RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780936|ref|YP_003065349.1| hypothetical protein
CLIBASIA_04175 [Candidatus Liberibacter asiaticus str. psy62]
         (182 letters)



>gnl|CDD|183019 PRK11179, PRK11179, DNA-binding transcriptional regulator AsnC;
           Provisional.
          Length = 153

 Score = 29.3 bits (66), Expect = 0.54
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 12/56 (21%)

Query: 7   KIALFIDGANLYASSKALGFDI------------DYRKLLKAFRSRAIVIRAYYYT 50
           K A  I G  +  + K LG+D+            DY   L    S   V+ AYY T
Sbjct: 48  KQAGIITGTRVDVNPKQLGYDVCCFIGIILKSAKDYPSALAKLESLDEVVEAYYTT 103


>gnl|CDD|150554 pfam09894, DUF2121, Uncharacterized protein conserved in archaea
           (DUF2121).  This domain, found in various hypothetical
           archaeal proteins, has no known function.
          Length = 194

 Score = 29.2 bits (66), Expect = 0.57
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 80  KVAKEFTENCGRKRVKSSMDVELAVDAFE 108
           K  KE  E   +K  K  M ++   D FE
Sbjct: 127 KYTKEIAEKELKKNWKKKMSLKDIRDIFE 155


>gnl|CDD|178323 PLN02721, PLN02721, threonine aldolase.
          Length = 353

 Score = 26.6 bits (59), Expect = 3.9
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 8   IALFIDGANLYASSKALGFDIDYRKLLKAFRSRAI 42
           + L IDGA ++ +S ALG  +   +L+KA  S ++
Sbjct: 172 LKLHIDGARIFNASVALGVPVH--RLVKAADSVSV 204


>gnl|CDD|115693 pfam07056, DUF1335, Protein of unknown function (DUF1335).  This
          family represents a conserved region approximately 130
          residues long within a number of proteins of unknown
          function that seem to be specific to the white spot
          syndrome virus (WSSV).
          Length = 131

 Score = 25.9 bits (57), Expect = 5.6
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 11/67 (16%)

Query: 24 LGFDI-DYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVA 82
          LGF + +  K LK+     +      Y+ V         P+  +     Y G  +V  + 
Sbjct: 38 LGFSLRNVTKKLKSM-EGNLRKHGGKYSMV---------PVVDICHRKFYKGLIIVNPIV 87

Query: 83 KEFTENC 89
            F+ +C
Sbjct: 88 GSFSSHC 94


>gnl|CDD|129043 smart00807, AKAP_110, A-kinase anchor protein 110 kDa.  This family
           consists of several mammalian protein kinase A anchoring
           protein 3 (PRKA3) or A-kinase anchor protein 110 kDa
           (AKAP 110) sequences. Agents that increase intracellular
           cAMP are potent stimulators of sperm motility. Anchoring
           inhibitor peptides, designed to disrupt the interaction
           of the cAMP-dependent protein kinase A (PKA) with A
           kinase-anchoring proteins (AKAPs), are potent inhibitors
           of sperm motility. PKA anchoring is a key biochemical
           mechanism controlling motility. AKAP110 shares
           compartments with both RI and RII isoforms of PKA and
           may function as a regulator of both motility- and
           head-associated functions such as capacitation and the
           acrosome reaction PUBMED:10319321.
          Length = 851

 Score = 26.1 bits (57), Expect = 5.8
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 82  AKEFTEN--CGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFT-TLVAALQRKVKK 138
           A E  EN  C R R  S+  +    +     +GL  +   SGDG     +V  L   V K
Sbjct: 618 APEQEENKLCERPRASSAAKLSERDETGGALQGLTKMDANSGDGQMNGQMVDHLMESVMK 677

Query: 139 VTIVSTVLSDPSMA 152
           + ++     D ++A
Sbjct: 678 LCLIIAKSCDAALA 691


>gnl|CDD|179321 PRK01688, PRK01688, histidinol-phosphate aminotransferase;
           Provisional.
          Length = 351

 Score = 26.1 bits (58), Expect = 6.0
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 12/44 (27%)

Query: 29  DYRKLLKAFRSRAIVI--RAYYYTTVVGDPEQQFSPLHPLLDWL 70
           D R LL+  R +AIV+   AY           +F P   L  WL
Sbjct: 166 DLRTLLELTRGKAIVVADEAYI----------EFCPQASLAGWL 199


>gnl|CDD|180396 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed.
          Length = 268

 Score = 25.6 bits (57), Expect = 8.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)

Query: 121 GDGCFTTL 128
           GDGCFTT 
Sbjct: 22  GDGCFTTA 29


>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase.  Members of
           this protein family are aminodeoxychorismate lyase (ADC
           lyase), EC 4.1.3.38, the PabC protein of PABA
           biosynthesis. PABA (para-aminobenzoate) is a precursor
           of folate, needed for de novo purine biosynthesis. This
           enzyme is a pyridoxal-phosphate-binding protein in the
           class IV aminotransferase family (pfam01063).
          Length = 261

 Score = 25.2 bits (56), Expect = 8.9
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 6/45 (13%)

Query: 121 GDGCFTTL------VAALQRKVKKVTIVSTVLSDPSMASDQLRRQ 159
           GDGCFTT       +  L   ++++   +  L  P    D LR +
Sbjct: 20  GDGCFTTAKVRNGKIELLDLHLERLQDAAARLGIPLPDWDALREE 64


>gnl|CDD|131764 TIGR02717, AcCoA-syn-alpha, acetyl coenzyme A synthetase (ADP
          forming), alpha domain.  Although technically
          reversible, it is believed that this group of
          ADP-dependent acetyl-CoA synthetases (ACS) act in the
          direction of acetate and ATP production in the
          organisms in which it has been characterized. In most
          species this protein exists as a fused alpha-beta
          domain polypeptide. In Pyrococcus and related species,
          however the domains exist as separate polypeptides.
          This model represents the alpha (N-terminal) domain. In
          Pyrococcus and related species there appears to have
          been the development of a paralogous family such that
          four other proteins are close relatives. In reference,
          one of these (along with its beta-domain partner) was
          characterized as ACS-II showing specificity for
          phenylacetyl-CoA. This model has been constructed to
          exclude these non-ACS-I paralogs. This may result in
          new, authentic ACS-I sequences falling below the
          trusted cutoff.
          Length = 447

 Score = 25.3 bits (56), Expect = 9.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 77 VVAKVAKEFTENCGRKRVKS 96
          V AK   +  E CG K VK 
Sbjct: 72 VPAKYVPQVVEECGEKGVKG 91


>gnl|CDD|148394 pfam06762, DUF1222, Protein of unknown function (DUF1222).  This
           family, which includes bacterial and eukaryotic members,
           represents a conserved region located towards the
           C-terminal end of a number of hypothetical proteins of
           unknown function. These are possibly integral membrane
           proteins.
          Length = 371

 Score = 25.3 bits (56), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 3/22 (13%)

Query: 54  GDPEQ---QFSPLHPLLDWLHY 72
           GD  +   Q +P HP LDW  +
Sbjct: 267 GDVSRIPRQIAPYHPRLDWQMW 288


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.137    0.393 

Gapped
Lambda     K      H
   0.267   0.0786    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,075,871
Number of extensions: 187595
Number of successful extensions: 364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 18
Length of query: 182
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 95
Effective length of database: 4,114,577
Effective search space: 390884815
Effective search space used: 390884815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)