RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780936|ref|YP_003065349.1| hypothetical protein
CLIBASIA_04175 [Candidatus Liberibacter asiaticus str. psy62]
         (182 letters)



>2qip_A Protein of unknown function VPA0982; APC85975, structural
           genomics, PSI-2, protein structure initiative; 1.48A
           {Vibrio parahaemolyticus rimd 2210633} (A:)
          Length = 165

 Score =  120 bits (303), Expect = 9e-29
 Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 13/168 (7%)

Query: 3   DPREKIALFIDGANLYASSK-ALGFDIDYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFS 61
           D +EKIA+ +D  N+Y + + A   + DY +          V+ A  Y     DP+Q   
Sbjct: 7   DHKEKIAILVDVQNVYYTCREAYRSNFDYNQFWYVATQEKEVVSAKAYAIASNDPKQ--- 63

Query: 62  PLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSG 121
                   L   GF+V  K   +  +       K   DV + +DA E +  ++ +++ SG
Sbjct: 64  --RQFHHILRGVGFEVXLKPYIQRRDGSA----KGDWDVGITLDAIEIAPDVDRVILVSG 117

Query: 122 DGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDLAYL 169
           DG F+ LV  +Q++  K      V   P + S  L   AD F+ +   
Sbjct: 118 DGDFSLLVERIQQRYNKKVT---VYGVPRLTSQTLIDCADNFVAIDDD 162


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 28.7 bits (64), Expect = 0.51
 Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 10/67 (14%)

Query: 121 GDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQL--RRQ---ADYFMDLAYLKNEIAR 175
           G G  TT   A  R+       ++   +      QL  R          +L  LK E   
Sbjct: 3   GKGILTT---A--REHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEE 57

Query: 176 DPDEDKK 182
            P ED+ 
Sbjct: 58  IPSEDQN 64


>1dqn_A Guanine phosphoribosyltransferase; protein-inhibitor
           complex, Mg IONS, pyrophosphate, transition state
           analogue; HET: IMU; 1.75A {Giardia lamblia}
           (A:1-59,A:176-230)
          Length = 114

 Score = 26.5 bits (58), Expect = 2.1
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query: 132 LQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166
           L+ +VKK  +++T     ++A+D  RR  +Y+ D+
Sbjct: 25  LESEVKKFHLLATFEECKALAADTARRMNEYYKDV 59


>1x7f_A Outer surface protein; structural genomics, unknown
          function, protein structure initiative, MCSG, PSI;
          2.30A {Bacillus cereus atcc 14579} (A:1-267)
          Length = 267

 Score = 25.8 bits (57), Expect = 3.5
 Identities = 5/32 (15%), Positives = 12/32 (37%)

Query: 54 GDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEF 85
             E+  +    +++    N  +V+  VA   
Sbjct: 67 RPKEEIVAEFKEIINHAKDNNMEVILDVAPAV 98


>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol
           metabolism; HET: NAD; 1.70A {Geobacillus
           stearothermophilus} (A:1-163)
          Length = 163

 Score = 25.6 bits (55), Expect = 4.1
 Identities = 6/62 (9%), Positives = 15/62 (24%), Gaps = 4/62 (6%)

Query: 118 IFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDLAYLKNEIARDP 177
              G    T +   L+    K  ++    +D  +         +          E+    
Sbjct: 13  YVQGKNVITKIANYLEGIGNKTVVI----ADEIVWKIAGHTIVNELKKGNIAAEEVVFSG 68

Query: 178 DE 179
           + 
Sbjct: 69  EA 70


>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium,
           contractIle protein; HET: DR6; 3.00A {Gallus gallus}
           (I:)
          Length = 182

 Score = 25.2 bits (55), Expect = 5.2
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 132 LQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL-AYLKNEIARDPDEDKK 182
           L+ K K+  +    +S  +M    L  +    MDL A LK     D +++K 
Sbjct: 102 LRGKFKRPPLRRVRMSADAMLRALLGSKHKVNMDLRANLKQVKKEDTEKEKD 153


>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase,
          ATP-binding, aminoacyl-tRNA synthetase, ligase,
          nucleotide-binding, protein biosynthesis; 2.80A
          {Trypanosoma brucei} (A:1-272,A:372-395)
          Length = 296

 Score = 25.1 bits (54), Expect = 5.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 26 FDIDYRKLLKAFRSRAI 42
           D++Y KL+K F S AI
Sbjct: 19 GDVNYDKLIKDFGSHAI 35


>1kq3_A Glycerol dehydrogenase; zinc, structural genomics, JCSG,
           PSI, protein structure initiative, joint center for
           structural genomics; 1.50A {Thermotoga maritima}
           (A:20-169)
          Length = 150

 Score = 25.0 bits (54), Expect = 6.3
 Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 4/64 (6%)

Query: 118 IFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDLAYLKNEIARDP 177
              G G    L   L R  ++  +V     D  +  + L            +  +I    
Sbjct: 4   YVQGAGAINILEEELSRFGERAFVV----IDDFVDKNVLGENFFSSFTKVRVNKQIFGGE 59

Query: 178 DEDK 181
             D+
Sbjct: 60  CSDE 63


>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase;
           nucleotide-binding domain, monofunctional,
           oxidoreductase; 2.80A {Saccharomyces cerevisiae}
           (A:1-13,A:120-295)
          Length = 189

 Score = 24.7 bits (53), Expect = 7.0
 Identities = 12/91 (13%), Positives = 23/91 (25%), Gaps = 10/91 (10%)

Query: 55  DPEQQFSPLHPLLDWLHYNGFQVVAKVAKEF---TENCGRKRVKSSMDVELAVDAFEQSE 111
           +     +  H +        +       K     T     K ++        +    +  
Sbjct: 18  NHVYYQNLYHNVR-------YLDKENRLKSILPCTPLAIVKILEFLKIYNNLLPEGNRLY 70

Query: 112 GLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142
           G + +VI   +     L A L      V  V
Sbjct: 71  GKKCIVINRSEIVGRPLAALLANDGATVYSV 101


>1f45_B Interleukin-12 alpha chain; cytokine, cytokine/cytpkine
           complex; HET: NAG MAN; 2.80A {Homo sapiens} (B:)
          Length = 197

 Score = 24.9 bits (54), Expect = 7.8
 Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 1/19 (5%)

Query: 32  KLLKAFRSRAIVI-RAYYY 49
            LL AFR RA+ I R   Y
Sbjct: 175 ILLHAFRIRAVTIDRVMSY 193


>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase,
          rossmann fold catalytic domain, anticodon recognition
          domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo
          sapiens} (A:50-304,A:406-437)
          Length = 287

 Score = 24.7 bits (53), Expect = 8.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 28 IDYRKLLKAFRSRAI 42
          IDY KL+  F S  I
Sbjct: 2  IDYDKLIVRFGSSKI 16


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.322    0.137    0.393 

Gapped
Lambda     K      H
   0.267   0.0493    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,458,393
Number of extensions: 63040
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 20
Length of query: 182
Length of database: 4,956,049
Length adjustment: 83
Effective length of query: 99
Effective length of database: 2,150,234
Effective search space: 212873166
Effective search space used: 212873166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.4 bits)