RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780936|ref|YP_003065349.1| hypothetical protein
CLIBASIA_04175 [Candidatus Liberibacter asiaticus str. psy62]
(182 letters)
>d1zbsa1 c.55.1.5 (A:108-283) Hypothetical protein PG1100
{Porphyromonas gingivalis [TaxId: 837]}
Length = 176
Score = 27.3 bits (60), Expect = 0.90
Identities = 19/153 (12%), Positives = 44/153 (28%), Gaps = 14/153 (9%)
Query: 8 IALFIDGANLYASSKALGFDIDYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQF-----SP 62
+ DG + A+ LG+ + + I + + + F
Sbjct: 14 NSCLFDGREIKANVSPLGYILG--DEGSGAVLGRLFIGSLLKGQMPEGLCEAFLQEYGLT 71
Query: 63 LHPLLDWLHYNGFQVV--AKVAKEFTENCGRKRVKSSMDVELAVDAFE---QSEGLEHLV 117
+++ ++ F A + ++ V S + + + +
Sbjct: 72 SADIIESVYRKPFPNRFLAGFSPFIAQHLDIPAVYSLVQNSFDDFLVRNVLRYNRPDLPL 131
Query: 118 IFSGDGCFTTLVAALQRKVKKVTI-VSTVLSDP 149
F G L +KK + + +VL P
Sbjct: 132 HFIG-SVAFHYREVLSSVIKKRGLTLGSVLQSP 163
>d1qwka_ c.1.7.1 (A:) Hypothetical protein C07D8.6 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 312
Score = 27.2 bits (59), Expect = 0.94
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 11 FIDGANLYASSKALGFDIDYRKLLKAFRSRAIVIRAYYY 49
ID A++Y + +A+G +K +V R +
Sbjct: 41 LIDTASVYQNEEAIG------TAIKELLEEGVVKREELF 73
>d1afsa_ c.1.7.1 (A:) 3-alpha-hydroxysteroid dehydrogenase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 319
Score = 26.5 bits (57), Expect = 1.4
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 11 FIDGANLYASSKALGFDIDYRKLLKAFRSRAIVIRAYYYTT 51
D A LY + +G + +++ V R + T
Sbjct: 48 HFDSAYLYEVEEEVG------QAIRSKIEDGTVKREDIFYT 82
>d1mi3a_ c.1.7.1 (A:) Xylose reductase {Fungi (Candida tenuis)
[TaxId: 45596]}
Length = 319
Score = 26.1 bits (56), Expect = 1.9
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 11 FIDGANLYASSKALGFDIDYRKLLKAFRSRAIVIRAYYYTT 51
DGA Y + K +G +K +V R + T
Sbjct: 42 LFDGAEDYGNEKEVG------DGVKRAIDEGLVKREEIFLT 76
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 25.6 bits (56), Expect = 2.3
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 28 IDYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLD--WLHYNGFQVVAKVAK 83
I KL F + T+V +PE PLH D Y + ++V K
Sbjct: 285 IAIDKLDDLFEDKIE-----LRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCK 337
>d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate
synthase {Caenorhabditis elegans [TaxId: 6239]}
Length = 397
Score = 25.2 bits (55), Expect = 3.7
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 29 DYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHY 72
D++ LL + + I + V + ++ P H +L L
Sbjct: 302 DFKSLLASPLIYDLAILTELASRVSYKVDDEYKPFHSVLSILSL 345
>d1hqta_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 324
Score = 24.5 bits (52), Expect = 5.1
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 6/35 (17%)
Query: 11 FIDGANLYASSKALGFDIDYRKLLKAFRSRAIVIR 45
ID A ++ + +G + L+ +
Sbjct: 42 HIDCAAIFGNELEIG------EALQETVGPGKAVP 70
>d1vbga1 c.1.12.2 (A:521-876) Pyruvate phosphate dikinase,
C-terminal domain {Maize (Zea mays) [TaxId: 4577]}
Length = 356
Score = 24.8 bits (53), Expect = 5.1
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 29 DYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQ 59
D+ + +A + IR PE
Sbjct: 85 DFEGIFRAMDGLPVTIRLLDPPLHEFLPEGN 115
>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 163
Score = 24.7 bits (53), Expect = 5.3
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 117 VIFSGDGCFTTLVAALQRKVKKVTIVSTVLSD 148
V S + TTL AAL ++ + L+
Sbjct: 32 VAASNNPELTTLTAALSGQLNPQVNLVDTLNS 63
>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640
{Mycobacterium leprae [TaxId: 1769]}
Length = 297
Score = 24.4 bits (52), Expect = 5.8
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 6/96 (6%)
Query: 2 FDPREKIALFIDGANLYASSKALGFD------IDYRKLLKAFRSRAIVIRAYYYTTVVGD 55
+ LF + L A + + ++R+ ++ R + V +
Sbjct: 179 LPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQE 238
Query: 56 PEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGR 91
+ DWL+ +G++ A+ A + GR
Sbjct: 239 LIYHDENRAVVADWLNRHGWRATAQSAPDEMRRVGR 274
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis)
[TaxId: 5482]}
Length = 334
Score = 24.5 bits (52), Expect = 5.9
Identities = 4/17 (23%), Positives = 8/17 (47%), Gaps = 1/17 (5%)
Query: 46 AYYYTTV-VGDPEQQFS 61
Y + VG +Q+ +
Sbjct: 12 PSYAADIVVGSNQQKQT 28
>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal
domain {Bacillus cereus [TaxId: 1396]}
Length = 244
Score = 24.3 bits (53), Expect = 6.7
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 54 GDPEQQFSPLHPLLDWLHYNGFQVVAKVAKE 84
E+ + +++ N +V+ VA
Sbjct: 43 RPKEEIVAEFKEIINHAKDNNMEVILDVAPA 73
>d1f45b_ a.26.1.1 (B:) Heterodimeric interleukin-12 alpha chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 24.1 bits (52), Expect = 7.5
Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 32 KLLKAFRSRAIVI-RAYYY 49
LL AFR RA+ I R Y
Sbjct: 156 ILLHAFRIRAVTIDRVMSY 174
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 24.0 bits (52), Expect = 7.5
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 75 FQVVAKVAKEFTENCGRKRVKSSMDVELA 103
+ V + A +TE+ RK V +MDV A
Sbjct: 43 LENVIRDAVTYTEHAKRKTVT-AMDVVYA 70
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden
pea (Pisum sativum) [TaxId: 3888]}
Length = 261
Score = 24.2 bits (51), Expect = 8.0
Identities = 5/30 (16%), Positives = 6/30 (20%)
Query: 62 PLHPLLDWLHYNGFQVVAKVAKEFTENCGR 91
+ WL G K G
Sbjct: 4 AVQTFWKWLQEEGVITAKTPVKASVVTEGL 33
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
phosphofructokinase {Lyme disease spirochete (Borrelia
burgdorferi) [TaxId: 139]}
Length = 550
Score = 23.9 bits (51), Expect = 8.9
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 90 GRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTT 127
GR ++++ A+ ++ L ++I GD T
Sbjct: 142 GRTKIETEEHYNKALFVAKE-NNLNAIIIIGGDDSNTN 178
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.393
Gapped
Lambda K H
0.267 0.0498 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 713,096
Number of extensions: 31561
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 19
Length of query: 182
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,309,196
Effective search space: 133537992
Effective search space used: 133537992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.6 bits)