HHsearch alignment for GI: 254780937 and conserved domain: COG1758
>COG1758 RpoZ DNA-directed RNA polymerase, subunit K/omega [Transcription].
Probab=99.80 E-value=5.8e-20 Score=132.77 Aligned_cols=72 Identities=54% Similarity=0.770 Sum_probs=65.0
Q ss_pred CCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 960008998512878999999999999998578877677446--854115675654058799999999999984
Q gi|254780937|r 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK--DKNTVVALREIASGTLSPDDLEEDFIHSLQ 72 (122)
Q Consensus 1 MARvTvEdcl~kv~nrf~LVllAa~RArql~~G~~~~v~~~n--dK~~ViALREIa~gki~~~~l~e~~I~~lq 72 (122)
T Consensus 1 m~~~~~~~l~~~~~~ryelv~~aa~RA~Ql~~ga~~~~~~~~~~~kpv~iAl~Ei~~g~i~~~i~~~~~~~~~~ 74 (74)
T COG1758 1 MARPTIEDLLDKVGNRYELVVVAAKRARQLAAGAPPLVDDEENKDKPVVIALREIAEGKIPIEILRELLIHSLQ 74 (74)
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCCCC
T ss_conf 98567999862035788999999999999983999765563336784899999998299782101122210239