HHsearch alignment for GI: 254780937 and conserved domain: PRK00392

>PRK00392 rpoZ DNA-directed RNA polymerase subunit omega; Reviewed.
Probab=100.00  E-value=6.8e-34  Score=211.22  Aligned_cols=83  Identities=45%  Similarity=0.637  Sum_probs=76.2

Q ss_pred             CCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9600089985128789999999999999985788-776774468541156756540587999999999999841164665
Q gi|254780937|r    1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHSLQKHVEIDE   79 (122)
Q Consensus         1 MARvTvEdcl~kv~nrf~LVllAa~RArql~~G~-~~~v~~~ndK~~ViALREIa~gki~~~~l~e~~I~~lq~~~e~~E   79 (122)
T Consensus         1 MARvTVEDCleki~NRF~LvllAs~RArql~~g~~~p~v~~~ndKptViALREIa~g~v~~~~L~e~~i~e~~~~~~~~e   80 (87)
T PRK00392          1 MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKVAWENDKPTVVALREIAEGLVDYEVIAQEEIVEDEPLFAAFE   80 (87)
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             98352999987079888999999999999984798875575368642045899882788999987999887775033245


Q ss_pred             CCHH
Q ss_conf             7856
Q gi|254780937|r   80 PDSP   83 (122)
Q Consensus        80 ~e~~   83 (122)
T Consensus        81 eE~~   84 (87)
T PRK00392         81 DESN   84 (87)
T ss_pred             CCCC
T ss_conf             3101