HHsearch alignment for GI: 254780937 and conserved domain: PRK00392
>PRK00392 rpoZ DNA-directed RNA polymerase subunit omega; Reviewed.
Probab=100.00 E-value=6.8e-34 Score=211.22 Aligned_cols=83 Identities=45% Similarity=0.637 Sum_probs=76.2
Q ss_pred CCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9600089985128789999999999999985788-776774468541156756540587999999999999841164665
Q gi|254780937|r 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHSLQKHVEIDE 79 (122)
Q Consensus 1 MARvTvEdcl~kv~nrf~LVllAa~RArql~~G~-~~~v~~~ndK~~ViALREIa~gki~~~~l~e~~I~~lq~~~e~~E 79 (122)
T Consensus 1 MARvTVEDCleki~NRF~LvllAs~RArql~~g~~~p~v~~~ndKptViALREIa~g~v~~~~L~e~~i~e~~~~~~~~e 80 (87)
T PRK00392 1 MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKVAWENDKPTVVALREIAEGLVDYEVIAQEEIVEDEPLFAAFE 80 (87)
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 98352999987079888999999999999984798875575368642045899882788999987999887775033245
Q ss_pred CCHH
Q ss_conf 7856
Q gi|254780937|r 80 PDSP 83 (122)
Q Consensus 80 ~e~~ 83 (122)
T Consensus 81 eE~~ 84 (87)
T PRK00392 81 DESN 84 (87)
T ss_pred CCCC
T ss_conf 3101