HHsearch alignment for GI: 254780937 and conserved domain: PRK01481
>PRK01481 rpoZ DNA-directed RNA polymerase subunit omega; Provisional.
Probab=100.00 E-value=6.9e-38 Score=233.74 Aligned_cols=86 Identities=37% Similarity=0.538 Sum_probs=77.8
Q ss_pred CCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 9600089985128789999999999999985788776--77446854115675654058799999999999984116466
Q gi|254780937|r 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPT--VDVGKDKNTVVALREIASGTLSPDDLEEDFIHSLQKHVEID 78 (122)
Q Consensus 1 MARvTvEdcl~kv~nrf~LVllAa~RArql~~G~~~~--v~~~ndK~~ViALREIa~gki~~~~l~e~~I~~lq~~~e~~ 78 (122)
T Consensus 1 MARVTVEDCl~kI~NRFeLVl~As~RARqL~~g~~~~~~~~~~nDK~tViALREIA~g~v~~e~Lke~lI~slQk~~~ie 80 (127)
T PRK01481 1 MARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVIALRRIAAGKVSVAQLEQDLINSLRTRTMIE 80 (127)
T ss_pred CCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 97153999887377678999999999999854799886670006877530258877278899999999999987501147
Q ss_pred CCCHHHHH
Q ss_conf 57856667
Q gi|254780937|r 79 EPDSPTEN 86 (122)
Q Consensus 79 E~e~~~~~ 86 (122)
T Consensus 81 ~~~~~d~~ 88 (127)
T PRK01481 81 PLVNQDES 88 (127)
T ss_pred CCCCCHHH
T ss_conf 31010023