HHsearch alignment for GI: 254780937 and conserved domain: PRK01481

>PRK01481 rpoZ DNA-directed RNA polymerase subunit omega; Provisional.
Probab=100.00  E-value=6.9e-38  Score=233.74  Aligned_cols=86  Identities=37%  Similarity=0.538  Sum_probs=77.8

Q ss_pred             CCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             9600089985128789999999999999985788776--77446854115675654058799999999999984116466
Q gi|254780937|r    1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPT--VDVGKDKNTVVALREIASGTLSPDDLEEDFIHSLQKHVEID   78 (122)
Q Consensus         1 MARvTvEdcl~kv~nrf~LVllAa~RArql~~G~~~~--v~~~ndK~~ViALREIa~gki~~~~l~e~~I~~lq~~~e~~   78 (122)
T Consensus         1 MARVTVEDCl~kI~NRFeLVl~As~RARqL~~g~~~~~~~~~~nDK~tViALREIA~g~v~~e~Lke~lI~slQk~~~ie   80 (127)
T PRK01481          1 MARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVIALRRIAAGKVSVAQLEQDLINSLRTRTMIE   80 (127)
T ss_pred             CCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             97153999887377678999999999999854799886670006877530258877278899999999999987501147


Q ss_pred             CCCHHHHH
Q ss_conf             57856667
Q gi|254780937|r   79 EPDSPTEN   86 (122)
Q Consensus        79 E~e~~~~~   86 (122)
T Consensus        81 ~~~~~d~~   88 (127)
T PRK01481         81 PLVNQDES   88 (127)
T ss_pred             CCCCCHHH
T ss_conf             31010023