HHsearch alignment for GI: 254780937 and conserved domain: PRK01814
>PRK01814 rpoZ DNA-directed RNA polymerase subunit omega; Validated.
Probab=99.44 E-value=4e-14 Score=99.86 Aligned_cols=59 Identities=25% Similarity=0.350 Sum_probs=52.1
Q ss_pred EEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHHHCCCCCHHH
Q ss_conf 008998512878999999999999998578877677446-85411567565405879999
Q gi|254780937|r 4 TTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTLSPDD 62 (122)
Q Consensus 4 vTvEdcl~kv~nrf~LVllAa~RArql~~G~~~~v~~~n-dK~~ViALREIa~gki~~~~ 62 (122)
T Consensus 4 PSiD~Ll~kvdSkYsLV~~AaKRAreL~~~~~~~l~~~~S~K~Vg~ALEEI~ag~lt~~p 63 (67)
T PRK01814 4 PSIDSLLTKIDSKYTLVTVAAKRAREMQLANNCVVEKPVSHKCVGKALEEIDAEALSYVP 63 (67)
T ss_pred CCHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECC
T ss_conf 779999986278413313777788997618854233576667099999999849536257