HHsearch alignment for GI: 254780937 and conserved domain: PRK03721

>PRK03721 rpoK DNA-directed RNA polymerase subunit K; Provisional.

Probab=95.90  E-value=0.012  Score=35.25  Aligned_cols=46  Identities=22%  Similarity=0.331  Sum_probs=39.2

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHHHCCCCCH
Q ss_conf             899999999999999857887767744685411-5675654058799
Q gi|254780937|r   15 NRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSP   60 (122)
Q Consensus        15 nrf~LVllAa~RArql~~G~~~~v~~~ndK~~V-iALREIa~gki~~   60 (122)
T Consensus         5 TryEkARIiGaRALQIsmGAPvli~~~~~~dpl~IA~~El~~~~iPi   51 (57)
T PRK03721          5 TRFEKARIIGARALQIAMGAPVLIDVPEGITPLEAAILEFEKGVIPI   51 (57)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCE
T ss_conf             27799998859999987599857718898798999999998699745