HHsearch alignment for GI: 254780937 and conserved domain: PRK04951
>PRK04951 rpoZ DNA-directed RNA polymerase subunit omega; Validated.
Probab=99.97 E-value=2.4e-31 Score=196.86 Aligned_cols=73 Identities=42% Similarity=0.626 Sum_probs=66.7
Q ss_pred CCEEEHHHHHCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 9600089985128789999999999999985-788776774468541156756540587999999999999841
Q gi|254780937|r 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHSLQK 73 (122)
Q Consensus 1 MARvTvEdcl~kv~nrf~LVllAa~RArql~-~G~~~~v~~~ndK~~ViALREIa~gki~~~~l~e~~I~~lq~ 73 (122)
T Consensus 1 MARvTVEDCl~~v~NRF~LVllAskRARql~~~g~~p~v~~~ndKptViALREIaeG~i~~~~l~~~~~~~~~e 74 (91)
T PRK04951 1 MARVTVQDAVEKIGNRFDLILVAARRARQLQVGGKDPLVPEENDKPTVIALREIEEGLINNQILDARERQEQQE 74 (91)
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 98344999998478788999999999999982998884687589541345998884678999999889899999