HHsearch alignment of GI: 254780937 and MMDB domain: 3iyd_E_

>3iyd_E (E:) DNA-directed RNA polymerase subunit omega; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12}

Probab=99.83  E-value=1.6e-22  Score=146.84  Aligned_cols=64  Identities=44%  Similarity=0.660  Sum_probs=59.8

Q ss_pred             CEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHHHCCCCCHHHHHH
Q ss_conf             60008998512878999999999999998578877677-44685411567565405879999999
Q gi|254780937|r    2 ARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPDDLEE   65 (122)
Q Consensus         2 ARvTvEdcl~kv~nrf~LVllAa~RArql~~G~~~~v~-~~ndK~~ViALREIa~gki~~~~l~e   65 (122)
                      ||+||+|||++|+|||.||++||||||||+.|++|++. .+++|++++|||||++|||+++.+.+
T Consensus         1 Arptid~ll~~v~sRy~Lv~~aaKRARqL~~g~~p~v~~~~~~K~~~iAL~EIa~Gkv~~~~~~e   65 (90)
T 3iyd_E            1 ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDV   65 (90)
T ss_dssp             CCSSSSSHHHHSSCSHHHHHHTTTTHHHHHHTCSTTCCSCTTSCCCCCBTTBCCCCCCSSCTTSC
T ss_pred             CCEEHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHCCH
T ss_conf             91419999985477879999999999998749988767887896088999999908976787331