HHsearch results for GI: 254780937 and protein with PDBid: 1qkl_A

>1qkl_A RPB6, DNA-directed RNA polymerase II 14.4 KD polypeptide; transcription; NMR {Homo sapiens} SCOP: a.143.1.2

Probab=97.47  E-value=0.00012  Score=45.27  Aligned_cols=47  Identities=11%  Similarity=0.244  Sum_probs=41.1

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHHHCCCCCH
Q ss_conf             7899999999999999857887767744685411-5675654058799
Q gi|254780937|r   14 DNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSP   60 (122)
Q Consensus        14 ~nrf~LVllAa~RArql~~G~~~~v~~~ndK~~V-iALREIa~gki~~   60 (122)
                      =++|+..-+-+.||.||+.|++|+|+.++...+. ||+.|...+||-+
T Consensus        57 lTkYE~arilG~Ra~Qi~~ga~~~i~~~~~~d~~~IA~~EL~~kkiPf  104 (127)
T 1qkl_A           57 MTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPI  104 (127)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSCCSSSCSSSSCSSSHHHHHHHHHTCCCE
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHCCCCCE
T ss_conf             219999999999999996699944457888799999999998399877