HHsearch results for GI: 254780937 and protein with PDBid: 2waq_K
>2waq_K DNA-directed RNA polymerase RPO6 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_I 2pmz_K 3hkz_K
Probab=97.14 E-value=0.00058 Score=41.43 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCH-HHHHHHHHCCCCCH
Q ss_conf 789999999999999985788776774468--541-15675654058799
Q gi|254780937|r 14 DNRFLLVLLASHRTRHLSQGAKPTVDVGKD--KNT-VVALREIASGTLSP 60 (122)
Q Consensus 14 ~nrf~LVllAa~RArql~~G~~~~v~~~nd--K~~-ViALREIa~gki~~ 60 (122)
=++|+..-+-+-||.||+.|++|+|+..+. -++ .||.+|.-.|++-+
T Consensus 27 LTKYE~aRIIG~Ra~QLs~GA~p~I~~~~~~~~d~~~IA~~EL~~~kiPf 76 (95)
T 2waq_K 27 LTRYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPI 76 (95)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCCTTCCCSSSCCSSSHHHHHHHHTTCSCE
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 06989999998999999779985786788788799999999998399887