HHsearch results for GI: 254780937 and protein with PDBid: 3lu0_E

>3lu0_E DNA-directed RNA polymerase subunit omega; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_E*
Probab=99.96  E-value=1.4e-30  Score=191.28  Aligned_cols=64  Identities=47%  Similarity=0.733  Sum_probs=60.8

Q ss_pred             CCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHHHCCCCCHHHHH
Q ss_conf             9600089985128789999999999999985788-776774468541156756540587999999
Q gi|254780937|r    1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLSPDDLE   64 (122)
Q Consensus         1 MARvTvEdcl~kv~nrf~LVllAa~RArql~~G~-~~~v~~~ndK~~ViALREIa~gki~~~~l~   64 (122)
                      ||||||||||+||+|||.||++||||||||+.|+ +|+++.+||||+|+||||||+|||+++.+.
T Consensus         1 MARvtVEDcl~kv~nRy~LV~lAakRARql~~g~~~~~~~~~~~K~~viALrEIa~gki~~~~l~   65 (91)
T 3lu0_E            1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILD   65 (91)
T ss_dssp             -CCTTHHHHHHHSSSHHHHHHHHHHHHHHHHHTCCCSCCSSSCCCSSCCSHHHHHSSSCEEESSS
T ss_pred             CCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHCC
T ss_conf             97132999988547796999999999999984898886787689607899999990897677623