HHSEARCH alignment of GI: 254780937 and SCOP domain: d1qkla_

Alignment

Probab=97.49  E-value=6.2e-05  Score=45.54  Aligned_cols=47  Identities=11%  Similarity=0.244  Sum_probs=41.1

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH-HHHHHHHHCCCCCH
Q ss_conf             789999999999999985788776774468541-15675654058799
Q gi|254780937|r   14 DNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNT-VVALREIASGTLSP   60 (122)
Q Consensus        14 ~nrf~LVllAa~RArql~~G~~~~v~~~ndK~~-ViALREIa~gki~~   60 (122)
                      =++|+..-+-+.||.||+.|++|+|+.++...+ .||+.|...+||-+
T Consensus        57 lTkYE~arilG~Ra~Qi~~ga~~~i~~~~~~d~~~IA~~EL~~kkiPf  104 (127)
T d1qkla_          57 MTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPI  104 (127)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSCCSSSCSSSSCSSSHHHHHHHHHTCCCE
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHCCCCCE
T ss_conf             219899999999999985699835668888799999999998399877

SCOP domain information

class: All alpha proteins
fold: RPB6/omega subunit-like
superfamily: RPB6/omega subunit-like
family: RPB6
domain: RPB6
species: Human (Homo sapiens) [TaxId: 9606]