HHSEARCH alignment of GI: 254780937 and SCOP domain: d1smye_

Alignment

Probab=96.15  E-value=0.0061  Score=34.32  Aligned_cols=54  Identities=24%  Similarity=0.449  Sum_probs=40.2

Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHH-HHCCCC-CCCCCC------------CCCCHH-HHHHHHHCCCCCH
Q ss_conf             99851287899999999999999-857887-767744------------685411-5675654058799
Q gi|254780937|r    7 EDCIDKVDNRFLLVLLASHRTRH-LSQGAK-PTVDVG------------KDKNTV-VALREIASGTLSP   60 (122)
Q Consensus         7 Edcl~kv~nrf~LVllAa~RArq-l~~G~~-~~v~~~------------ndK~~V-iALREIa~gki~~   60 (122)
                      ...+.-.+|||.|.++.++||-| |.+|.+ .+++.+            .|-|+| .|.+|..-|++..
T Consensus         6 D~ll~ltDSkYRLsvVvakRA~QlLr~g~~ntvL~pde~p~~~tleg~~~dpN~vt~AMkEL~tGrl~~   74 (95)
T d1smye_           6 DKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNAETWAMKELLTGRLVF   74 (95)
T ss_dssp             HHHHHTSSSHHHHHHHHHHHHHHHHHTCTTCCSCCSSSCCCCSSSSGGGTSSCSHHHHHHHHTTTCEEE
T ss_pred             HHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCEEE
T ss_conf             778631444224413548989999871798563696562556402556799758899999987373553

SCOP domain information

class: All alpha proteins
fold: RPB6/omega subunit-like
superfamily: RPB6/omega subunit-like
family: RNA polymerase omega subunit
domain: RNA polymerase omega subunit
species: Thermus thermophilus [TaxId: 274]