RPSBLAST alignment of GI: 254780937 and protein with PDBid: 3iyd

>3iyd_E DNA-directed RNA polymerase subunit omega; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12} Length = 90

 Score = 93.3 bits (232), Expect = 1e-20
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 2/88 (2%)

Query: 2  ARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTVVALREIASGTLSP 60
          AR TV+D ++K+ NRF LVL+A+ R R +  G K P V    DK TV+ALREI  G ++ 
Sbjct: 1  ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINN 60

Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSD 88
            L+       Q+  E  E  + T  ++
Sbjct: 61 QILDVR-ERQEQQEQEAAELQAVTAIAE 87