RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780937|ref|YP_003065350.1| DNA-directed RNA polymerase
subunit omega [Candidatus Liberibacter asiaticus str. psy62]
         (122 letters)



>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
          maltophilia [TaxId: 40324]}
          Length = 490

 Score = 26.2 bits (56), Expect = 0.86
 Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 46 TVVALRE-IASGTLSPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEAL 97
           V  L+  + +G L    L + ++    + +   +   P   +      P+AL
Sbjct: 8  DVADLQARMTAGELDSTTLTQAYL----QRIAALDRTGPRLRA-VIELNPDAL 55


>d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 591

 Score = 25.6 bits (55), Expect = 1.4
 Identities = 3/27 (11%), Positives = 11/27 (40%)

Query: 50  LREIASGTLSPDDLEEDFIHSLQKHVE 76
           L ++A+       + + F     + ++
Sbjct: 549 LDQVANHEAEWKAVLDHFFSDFTQQLD 575


>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase
           Hmth1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 156

 Score = 25.4 bits (55), Expect = 1.6
 Identities = 10/61 (16%), Positives = 18/61 (29%)

Query: 46  TVVALREIASGTLSPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEG 105
           TV AL ++           E     +     I      ++     W + + + F  M   
Sbjct: 60  TVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPD 119

Query: 106 D 106
           D
Sbjct: 120 D 120


>d1uzea_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 579

 Score = 24.8 bits (53), Expect = 2.2
 Identities = 6/42 (14%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 51  REIASGTLSPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWH 92
             +  G+++ ++  +++     K+  +  P   T+  DF   
Sbjct: 430 WRVFDGSITKENYNQEWWSLRLKYQGLCPPVPRTQG-DFDPG 470


>d1twff_ a.143.1.2 (F:) RPB6 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 84

 Score = 24.6 bits (54), Expect = 2.5
 Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 26 RTRHLSQGAKPTVDVGKDKNTV-VALREIASGTL 58
          R   +S  A   VD+  + + + +A++E+A   +
Sbjct: 26 RALQISMNAPVFVDLEGETDPLRIAMKELAEKKI 59


>d1of8a_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate
          synthase (DAHP synthase, AroG) {Baker's yeast
          (Saccharomyces cerevisiae), tyrosine-regulated isozyme
          [TaxId: 4932]}
          Length = 346

 Score = 24.0 bits (52), Expect = 4.0
 Identities = 6/19 (31%), Positives = 9/19 (47%)

Query: 2  ARTTVEDCIDKVDNRFLLV 20
           R    D I   D+R L++
Sbjct: 32 GRREAIDIITGKDDRVLVI 50


>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens,
           strain am1 [TaxId: 408]}
          Length = 123

 Score = 23.9 bits (51), Expect = 4.2
 Identities = 9/43 (20%), Positives = 16/43 (37%)

Query: 25  HRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDF 67
               H   G    V VG  ++ + A + +    L+   L+  F
Sbjct: 77  KCAPHYMMGMVALVVVGDKRDNLEAAKSVQHNKLTQKRLDPLF 119


>d1n8fa_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate
          synthase (DAHP synthase, AroG) {Escherichia coli,
          phenylalanine-regulated isozyme [TaxId: 562]}
          Length = 343

 Score = 23.6 bits (51), Expect = 5.2
 Identities = 6/19 (31%), Positives = 10/19 (52%)

Query: 2  ARTTVEDCIDKVDNRFLLV 20
          AR  +   +   D+R L+V
Sbjct: 32 ARKAIHKILKGNDDRLLVV 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 450,030
Number of extensions: 19123
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 12
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)