Query gi|254780938|ref|YP_003065351.1| 4'-phosphopantetheinyl transferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 132
No_of_seqs 121 out of 1825
Neff 6.6
Searched_HMMs 13730
Date Wed Jun 1 10:44:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780938.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ftha_ d.150.1.2 (A:) Holo-(a 100.0 3.4E-42 0 258.7 8.8 114 1-129 1-116 (117)
2 d1f7la_ d.150.1.2 (A:) Holo-(a 100.0 6E-41 4.2E-45 251.6 9.1 115 2-129 2-118 (118)
3 d1qr0a2 d.150.1.1 (A:102-228) 99.4 7.7E-15 5.6E-19 102.7 -0.5 103 5-128 3-107 (127)
4 d1qr0a1 d.150.1.1 (A:1-101) 4' 97.9 1.3E-06 9.3E-11 55.8 0.8 79 24-125 18-99 (101)
5 d2fk4a1 g.90.1.1 (A:4-67) E6 o 13.7 35 0.0025 13.4 1.4 28 28-55 27-54 (64)
6 d1ybea2 d.41.2.2 (A:8-167) Nic 12.2 42 0.003 12.9 1.5 56 30-95 80-135 (160)
7 d2r85a2 d.142.1.9 (A:100-334) 8.2 51 0.0037 12.4 0.7 17 72-88 166-182 (235)
8 d2fr2a1 b.60.1.8 (A:4-164) Hyp 6.8 69 0.005 11.7 4.1 72 44-122 7-88 (161)
9 d1qasa3 c.1.18.1 (A:299-625) P 6.5 47 0.0034 12.6 -0.1 28 57-88 29-56 (327)
10 d1sena_ c.47.1.1 (A:) Thioredo 6.2 50 0.0036 12.5 -0.1 15 63-77 1-15 (135)
No 1
>d1ftha_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS {Streptococcus pneumoniae [TaxId: 1313]}
Probab=100.00 E-value=3.4e-42 Score=258.74 Aligned_cols=114 Identities=35% Similarity=0.513 Sum_probs=104.5
Q ss_pred CEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC--CCCCCCCCEEEECCCEEEEECCCCCCCCCCCEEEE
Q ss_conf 9679976544589999999742276898751978899984036--87420011123121123464066789874310799
Q gi|254780938|r 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSC--NRVASYAKRFAAKEAFSKAIGTGISKGVSWKDIEV 78 (132)
Q Consensus 1 MI~GIG~Div~i~Ri~~~l~~~~~~f~~ri~t~~E~~~~~~~~--~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~dIeI 78 (132)
||+|||+|||+++||+++++++ ++|++|+||+.|+++|...+ ++.++||||||||||++||||+|++ +++|+||||
T Consensus 1 MI~GIG~Div~i~Ri~~~l~~~-~~f~~rift~~E~~~~~~~~~~~~~~~lA~rfAaKEA~~KAlg~g~~-~~~~~dIeI 78 (117)
T d1ftha_ 1 MIVGHGIDIEELASIESAVTRH-EGFAKRVLTALEMERFTSLKGRRQIEYLAGRWSAKEAFSKAMGTGIS-KLGFQDLEV 78 (117)
T ss_dssp CEEEEEEEEEEHHHHHHHHHTT-SSHHHHHSCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTSCSS-SSCGGGCEE
T ss_pred CCEEEEEEEEEHHHHHHHHHHC-HHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCEEEE
T ss_conf 9139988776859999999877-67998628988988887431206899999989999999877634753-346636999
Q ss_pred EECCCCCEEEEECHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEEEE
Q ss_conf 988888749999758999999614677712899998717976899999873
Q gi|254780938|r 79 CHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFAQAFVVIES 129 (132)
Q Consensus 79 ~~~~~G~P~i~l~~~~~~~~~~~~~~~~~~~i~iSiSHd~~~A~A~vIlE~ 129 (132)
.++++|+|++.+.+. ..++|||||||++||+|+||+|+
T Consensus 79 ~~~~~G~P~~~~~~~-------------~~~~~lSISH~~~~a~A~vi~e~ 116 (117)
T d1ftha_ 79 LNNERGAPYFSQAPF-------------SGKIWLSISHTDQFVTASVILEE 116 (117)
T ss_dssp EECTTSCEEEEECSC-------------CSEEEEEEEECSSEEEEEEEEEC
T ss_pred EECCCCCEEEEECCC-------------CCEEEEEEECCCCCEEEEEEEEE
T ss_conf 999999979997799-------------88899999689997999999975
No 2
>d1f7la_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS {Bacillus subtilis [TaxId: 1423]}
Probab=100.00 E-value=6e-41 Score=251.62 Aligned_cols=115 Identities=40% Similarity=0.561 Sum_probs=104.5
Q ss_pred EEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC--CCCCCCCCEEEECCCEEEEECCCCCCCCCCCEEEEE
Q ss_conf 679976544589999999742276898751978899984036--874200111231211234640667898743107999
Q gi|254780938|r 2 IIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSC--NRVASYAKRFAAKEAFSKAIGTGISKGVSWKDIEVC 79 (132)
Q Consensus 2 I~GIG~Div~i~Ri~~~l~~~~~~f~~ri~t~~E~~~~~~~~--~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~dIeI~ 79 (132)
|+|||+|||+++||+++++++ ++|++|+||+.|+++|...+ ++.++||||||||||++||||+|++.++.|+||||.
T Consensus 2 I~GIG~Div~i~Ri~~~~~~~-~~f~~rift~~E~~~~~~~~~~~~~~~lAgrfAaKEA~~Kalg~g~~~~~~~~dieI~ 80 (118)
T d1f7la_ 2 IYGIGLDITELKRIASMAGRQ-KRFAERILTRSELDQYYELSEKRKNEFLAGRFAAKEAFSKAFGTGIGRQLSFQDIEIR 80 (118)
T ss_dssp EEEEEEEEEEHHHHHHHHHHC-TTHHHHHCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTSCSBTTBCGGGCEEE
T ss_pred EEEEEEEEEEHHHHHHHHHHC-HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
T ss_conf 399999876779999998726-5799874799999999985101379999999999999998503677877753179999
Q ss_pred ECCCCCEEEEECHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEEEE
Q ss_conf 88888749999758999999614677712899998717976899999873
Q gi|254780938|r 80 HFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFAQAFVVIES 129 (132)
Q Consensus 80 ~~~~G~P~i~l~~~~~~~~~~~~~~~~~~~i~iSiSHd~~~A~A~vIlE~ 129 (132)
++++|+|.+.+++. ....+|||||||++||+|+||+|+
T Consensus 81 ~~~~G~P~~~~~~~------------~~~~~~vSISH~~~~A~A~vi~ek 118 (118)
T d1f7la_ 81 KDQNGKPYIICTKL------------SPAAVHVSITHTKEYAAAQVVIER 118 (118)
T ss_dssp ECTTSCEEEEETTT------------EEEEEEEEEEECSSEEEEEEEEEC
T ss_pred ECCCCCCEEEECCC------------CCCEEEEEEECCCCCEEEEEEEEC
T ss_conf 99999969996677------------686799999679997899999979
No 3
>d1qr0a2 d.150.1.1 (A:102-228) 4'-Phosphopantetheinyl transferase SFP {Bacillus subtilis [TaxId: 1423]}
Probab=99.40 E-value=7.7e-15 Score=102.67 Aligned_cols=103 Identities=20% Similarity=0.211 Sum_probs=80.9
Q ss_pred EEEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC--CCCCCCCCEEEECCCEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf 976544589999999742276898751978899984036--874200111231211234640667898743107999888
Q gi|254780938|r 5 IGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSC--NRVASYAKRFAAKEAFSKAIGTGISKGVSWKDIEVCHFP 82 (132)
Q Consensus 5 IG~Div~i~Ri~~~l~~~~~~f~~ri~t~~E~~~~~~~~--~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~dIeI~~~~ 82 (132)
||+||..+.+ ...++.+|+||+.|++++...+ ++...|+..|++|||++||+|+|++ ..++++++..++
T Consensus 3 VGIDIE~i~~-------~~~~~~~~~fs~~E~~~l~~~~~~~~~~~F~~~Wt~KEA~~Ka~G~GL~--~~l~~~~~~~~~ 73 (127)
T d1qr0a2 3 IGIDIEKTKP-------ISLEIAKRFFSKTEYSDLLAKDKDEQTDYFYHLWSMKESFIKQEGKGLS--LPLDSFSVRLHQ 73 (127)
T ss_dssp CEEEEEECCC-------CCHHHHSSSSCHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHCSTTS--CCSSCCEEEECG
T ss_pred EEEEEEEECC-------CHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCEEEEEECC
T ss_conf 0699899655-------6799999958999999998799657999999999985899988477768--898648998478
Q ss_pred CCCEEEEECHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEEE
Q ss_conf 8874999975899999961467771289999871797689999987
Q gi|254780938|r 83 GGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFAQAFVVIE 128 (132)
Q Consensus 83 ~G~P~i~l~~~~~~~~~~~~~~~~~~~i~iSiSHd~~~A~A~vIlE 128 (132)
.+.|.+...+.. .. + ...+.+.+.+|.+|+++.+
T Consensus 74 ~~~~~~~~~~~~---------~~--~-~~~~~~~~~~y~~Av~~~~ 107 (127)
T d1qr0a2 74 DGQVSIELPDSH---------SP--C-YIKTYEVDPGYKMAVCAAH 107 (127)
T ss_dssp GGCEEEECSCTT---------SC--C-EEEEECSCTTEEEEEEESS
T ss_pred CCCEEEECCCCC---------CC--E-EEEEEECCCCEEEEEEECC
T ss_conf 887378707987---------87--5-9999565999899999878
No 4
>d1qr0a1 d.150.1.1 (A:1-101) 4'-Phosphopantetheinyl transferase SFP {Bacillus subtilis [TaxId: 1423]}
Probab=97.87 E-value=1.3e-06 Score=55.79 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=60.5
Q ss_pred HHHHHHHCCHHHHHHHHCCC---CCCCCCCCEEEECCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECHHHHHHHHH
Q ss_conf 76898751978899984036---874200111231211234640667898743107999888887499997589999996
Q gi|254780938|r 24 RKFESRCFSSLEQDVCDLSC---NRVASYAKRFAAKEAFSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSS 100 (132)
Q Consensus 24 ~~f~~ri~t~~E~~~~~~~~---~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~dIeI~~~~~G~P~i~l~~~~~~~~~~ 100 (132)
++++ ..++++|++...... ++.+++++|...+.++.+.+| +.+.++++.+++.|||++. +
T Consensus 18 ~~~~-~~Ls~~e~~r~~r~~~~~dr~~~l~~r~llr~~l~~~~~------~~p~~i~~~~~~~GKP~l~--~-------- 80 (101)
T d1qr0a1 18 ERFM-TFISPEKREKCRRFYHKEDAHRTLLGDVLVRSVISRQYQ------LDKSDIRFSTQEYGKPCIP--D-------- 80 (101)
T ss_dssp HHHH-TTSCHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHTT------CCGGGCCCEECTTSCEECT--T--------
T ss_pred HHHH-HHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC------CCCCCEEEEECCCCCCCCC--C--------
T ss_conf 9999-879999999999648999999999999999999999849------9942206885799984016--8--------
Q ss_pred HCCCCCCEEEEEEEECCCCEEEEEE
Q ss_conf 1467771289999871797689999
Q gi|254780938|r 101 LVPKGYKPVVHLTISDDFPFAQAFV 125 (132)
Q Consensus 101 ~~~~~~~~~i~iSiSHd~~~A~A~v 125 (132)
. ..++.+|||+++|++.-+
T Consensus 81 --~----~~i~FNiSHsg~~vv~av 99 (101)
T d1qr0a1 81 --L----PDAHFNISHSGRWVIGAF 99 (101)
T ss_dssp --C----TTCEEEEEEETTEEEEEE
T ss_pred --C----CCCEEEECCCCCEEEEEE
T ss_conf --9----992899546678199998
No 5
>d2fk4a1 g.90.1.1 (A:4-67) E6 oncoprotein {Human papillomavirus type 16 [TaxId: 333760]}
Probab=13.74 E-value=35 Score=13.37 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=23.0
Q ss_pred HHHCCHHHHHHHHCCCCCCCCCCCEEEE
Q ss_conf 8751978899984036874200111231
Q gi|254780938|r 28 SRCFSSLEQDVCDLSCNRVASYAKRFAA 55 (132)
Q Consensus 28 ~ri~t~~E~~~~~~~~~~~~~lAgrfAa 55 (132)
-+.|++.|....-....+....+|+|-+
T Consensus 27 ~kpL~~~EK~~~i~~~~~Fh~Irg~WrG 54 (64)
T d2fk4a1 27 QKPLSPEEKQRHLDKKQRFHNIRGRWTG 54 (64)
T ss_dssp CCCCCHHHHHHHHHHCSCEEEETTEEES
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCEEEE
T ss_conf 9979999999999779988998886988
No 6
>d1ybea2 d.41.2.2 (A:8-167) Nicotinate phosphoribosyltransferase, N-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=12.16 E-value=42 Score=12.90 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=31.2
Q ss_pred HCCHHHHHHHHCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECHHHH
Q ss_conf 519788999840368742001112312112346406678987431079998888874999975899
Q gi|254780938|r 30 CFSSLEQDVCDLSCNRVASYAKRFAAKEAFSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRAS 95 (132)
Q Consensus 30 i~t~~E~~~~~~~~~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~dIeI~~~~~G~P~i~l~~~~~ 95 (132)
=||++|++|..+.+- +++..--|++++.-|.. +.|..- +.-.+.|.|.+++.|...
T Consensus 80 rFt~eei~yL~~~~~----~~~~~~f~~~fl~~L~~-----f~f~~~-~~~~~eG~l~i~V~GP~~ 135 (160)
T d1ybea2 80 RLSKKENIWLAGNTF----YGRSQIFEPEFLSWLSS-----YQLPEY-ELFKRDGQYELNFHGRWM 135 (160)
T ss_dssp CCCHHHHHHHHHSCS----SSCSCCSCHHHHHHHHT-----CCCCCC-EEEECSSCEEEEECSBHH
T ss_pred CCCHHHHHHHHHCCC----CCCCCCCCHHHHHHHHC-----CCCCCE-EEEECCCCEEEEEEEEHH
T ss_conf 999999999984688----55567679899999714-----789960-899659938999998899
No 7
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=8.17 E-value=51 Score=12.40 Aligned_cols=17 Identities=12% Similarity=-0.146 Sum_probs=8.0
Q ss_pred CCCEEEEEECCCCCEEE
Q ss_conf 43107999888887499
Q gi|254780938|r 72 SWKDIEVCHFPGGKPYI 88 (132)
Q Consensus 72 ~~~dIeI~~~~~G~P~i 88 (132)
+.-++|...++.|+|++
T Consensus 166 G~~~ve~~~~~dg~~~v 182 (235)
T d2r85a2 166 GPFCLEGVFTPDLEFVV 182 (235)
T ss_dssp EEEEEEEEECTTSCEEE
T ss_pred EEEEEEEEECCCCCEEE
T ss_conf 31468777828997999
No 8
>d2fr2a1 b.60.1.8 (A:4-164) Hypothetical protein Rv2717c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.81 E-value=69 Score=11.66 Aligned_cols=72 Identities=14% Similarity=0.242 Sum_probs=38.5
Q ss_pred CCCCCCCCEEEECCCEEEEECCCCCCCCCC-CEEEEEECCCCCEEEEECHHHHHHHHHHC---------CCCCCEEEEEE
Q ss_conf 874200111231211234640667898743-10799988888749999758999999614---------67771289999
Q gi|254780938|r 44 NRVASYAKRFAAKEAFSKAIGTGISKGVSW-KDIEVCHFPGGKPYISISGRASDVLSSLV---------PKGYKPVVHLT 113 (132)
Q Consensus 44 ~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~-~dIeI~~~~~G~P~i~l~~~~~~~~~~~~---------~~~~~~~i~iS 113 (132)
.|..+|.|+|-.+ .... -+++. ...| .+|++.+ .|+|++.++..+...-+... ... ...+.++
T Consensus 7 ~PLa~LvG~W~G~-G~~~--~P~~~-~~~y~e~i~fs~--~G~p~L~y~s~~w~~~~~~p~h~E~Gywr~~~-~~~ve~~ 79 (161)
T d2fr2a1 7 QALSPLLGSWAGR-GAGK--YPTIR-PFEYLEEVVFAH--VGKPFLTYTQQTRAVADGKPLHSETGYLRVCR-PGCVELV 79 (161)
T ss_dssp GGGGGGCEEEEEE-EEEC--CTTSC-CEEEEEEEEEEE--CSSSEEEEEEEEEETTTCCEEEEEEEEEEESS-TTEEEEE
T ss_pred HHCCEEEEEEEEE-EECC--CCCCC-CEEEEEEEEEEC--CCCCEEEEEEEEEECCCCCCCEEEEEEEEECC-CCCEEEE
T ss_conf 1110465999975-2134--99989-678799999977--99985999999999999982404569999879-9939999
Q ss_pred EECCCCEEE
Q ss_conf 871797689
Q gi|254780938|r 114 ISDDFPFAQ 122 (132)
Q Consensus 114 iSHd~~~A~ 122 (132)
++|-..++.
T Consensus 80 la~p~G~~e 88 (161)
T d2fr2a1 80 LAHPSGITE 88 (161)
T ss_dssp EEETTTEEE
T ss_pred EEECCCEEE
T ss_conf 995797099
No 9
>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.53 E-value=47 Score=12.62 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=0.0
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 11234640667898743107999888887499
Q gi|254780938|r 57 EAFSKAIGTGISKGVSWKDIEVCHFPGGKPYI 88 (132)
Q Consensus 57 EA~~KAlg~g~~~~~~~~dIeI~~~~~G~P~i 88 (132)
||..+||..|.+ .-|+++-.+++|.|.|
T Consensus 29 ~~~~~~l~~G~R----~ielD~w~g~d~ePvV 56 (327)
T d1qasa3 29 EAYIRALCKGCR----CLELDCWDGPNQEPII 56 (327)
T ss_dssp HHHHHHHHTTCC----EEEEEEECCGGGCCEE
T ss_pred HHHHHHHHHCCC----EEEEEEECCCCCCEEE
T ss_conf 999999981994----8999822499998389
No 10
>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.25 E-value=50 Score=12.47 Aligned_cols=15 Identities=27% Similarity=0.951 Sum_probs=0.0
Q ss_pred ECCCCCCCCCCCEEE
Q ss_conf 406678987431079
Q gi|254780938|r 63 IGTGISKGVSWKDIE 77 (132)
Q Consensus 63 lg~g~~~~~~~~dIe 77 (132)
|+-|++.++.|+|.+
T Consensus 1 ~~~~~~~~i~w~~~~ 15 (135)
T d1sena_ 1 LGKGFGDHIHWRTLE 15 (135)
T ss_dssp CCTTSCTTSCBCCHH
T ss_pred CCCCCCCCEEEEEHH
T ss_conf 988778822366899
Done!