RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780938|ref|YP_003065351.1| 4'-phosphopantetheinyl
transferase [Candidatus Liberibacter asiaticus str. psy62]
         (132 letters)



>gnl|CDD|31079 COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase)
           [Lipid metabolism].
          Length = 127

 Score =  140 bits (354), Expect = 1e-34
 Identities = 59/130 (45%), Positives = 79/130 (60%), Gaps = 4/130 (3%)

Query: 1   MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFS 60
           MIIGIG DIV I+RI + L+ F  +F  R  +  E +  +   +R    A RFAAKEA S
Sbjct: 1   MIIGIGIDIVEIERIEKALERFGERFAERILTEEELEYYEKLKSRAEFLAGRFAAKEAVS 60

Query: 61  KAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPF 120
           KA+GTGI KGVS+KDIE+ +   GKP + +SG A+  L  L        +HL+IS D  +
Sbjct: 61  KALGTGIGKGVSFKDIEILNDELGKPTVRLSGEAAKALEKLGVA----NIHLSISHDRDY 116

Query: 121 AQAFVVIESL 130
           A A V++E L
Sbjct: 117 AIAVVILEKL 126


>gnl|CDD|145012 pfam01648, ACPS, 4'-phosphopantetheinyl transferase superfamily. 
          Members of this family transfers the
          4'-phosphopantetheine (4'-PP) moiety from coenzyme A
          (CoA) to the invariant serine of pfam00550. This
          post-translational modification renders holo-ACP
          capable of acyl group activation via thioesterification
          of the cysteamine thiol of 4'-PP. This superfamily
          consists of two subtypes: The ACPS type and the Sfp
          type. The structure of the Sfp type is known, which
          shows the active site accommodates a magnesium ion. The
          most highly conserved regions of the alignment are
          involved in binding the magnesium ion.
          Length = 58

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 3  IGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCD--LSCNRVASYAKRFAAKEAFS 60
          +GI  DI  I+RI         K   R F+  E  +       ++  ++A+ + AKEA  
Sbjct: 1  VGI--DIEKIRRIR-----DGEKLAERIFTPEELALLAALPEPDQARAFARLWTAKEAVL 53

Query: 61 KAIGT 65
          KA+G 
Sbjct: 54 KALGL 58


>gnl|CDD|32274 COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme
           metabolism].
          Length = 223

 Score = 34.6 bits (79), Expect = 0.010
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 3   IGIGSDIVSIQRISR-LLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSK 61
           IG+  + +  +   R L   F   FE    + L++D          ++ + +  KEA  K
Sbjct: 105 IGVDIEKIRPRAGWRSLAARFFHPFEPNELAWLDKD------QDNEAFYRLWTLKEAVLK 158

Query: 62  AIGTGISKGVS 72
           A G G++ G+S
Sbjct: 159 ATGKGLADGLS 169


>gnl|CDD|36163 KOG0945, KOG0945, KOG0945, Alpha-aminoadipic semialdehyde
           dehydrogenase-phosphopantetheinyl transferase [Amino
           acid transport and metabolism, Coenzyme transport and
           metabolism].
          Length = 289

 Score = 30.8 bits (69), Expect = 0.11
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 5   IGSDIVSIQR---ISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSK 61
           +G DI+  +        L+ F R F    +  L+    +    +   + + +  KEA  K
Sbjct: 128 VGIDIMRPKERKTAHEELELFKRVFSEDEWKMLKSAPDEEV--QRTMFYRLWTLKEAILK 185

Query: 62  AIGTGISKGVSWKDIEV 78
           A G G++  +S  D   
Sbjct: 186 ATGVGLNTDLSLLDFSA 202


>gnl|CDD|33713 COG3931, COG3931, Predicted N-formylglutamate amidohydrolase [Amino
           acid transport and metabolism].
          Length = 263

 Score = 29.5 bits (66), Expect = 0.30
 Identities = 13/61 (21%), Positives = 26/61 (42%)

Query: 12  IQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSKAIGTGISKGV 71
           +QR SRLL   NR  ++        +   +  N   S  +R A  + F +     +++ +
Sbjct: 76  LQRFSRLLIDCNRPEDAPDLIPQLSEGTVVPGNHPLSEEERRARIDRFYRPFHEAVTRII 135

Query: 72  S 72
           +
Sbjct: 136 A 136


>gnl|CDD|145467 pfam02331, P35, Apoptosis preventing protein.  This viral protein
          functions to block the host apoptotic response caused
          by infection by the virus. The apoptosis preventing
          protein (or early 35kD protein, P35) acts by blocking
          caspase protease activity.
          Length = 300

 Score = 27.1 bits (60), Expect = 1.4
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 1  MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRF 53
          M   I   IVS+ R++  L+   +      F  LE++  +    ++  + K F
Sbjct: 45 MAFNISGPIVSVTRVNNNLRDMIKSKIDEQFDQLERNYHNKRSTQMDGFHKYF 97


>gnl|CDD|133094 cd06236, M14_AGBL5_like, Peptidase M14-like domain of ATP/GTP
          binding protein_like (AGBL)-5, and related proteins.
          The Peptidase M14 family of metallocarboxypeptidases
          are zinc-binding carboxypeptidases (CPs) which
          hydrolyze single, C-terminal amino acids from
          polypeptide chains, and have a recognition site for the
          free C-terminal carboxyl group, which is a key
          determinant of specificity. This eukaryotic subgroup
          includes the human AGBL5 and the mouse cytosolic
          carboxypeptidase (CCP)-5. ATP/GTP binding protein
          (AGTPBP-1/Nna1)-like proteins are active
          metallopeptidases that are thought to act on cytosolic
          proteins such as alpha-tubulin, to remove a C-terminal
          tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje
          cell degeneration (pcd). AGTPBP-1/Nna1 however does not
          belong to this subgroup. AGTPBP-1/Nna1-like proteins
          from the different phyla are highly diverse, but they
          all contain a unique N-terminal conserved domain right
          before the CP domain. It has been suggested that this
          N-terminal domain might act as a folding domain.
          Length = 304

 Score = 25.8 bits (57), Expect = 4.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 79 CHFPGGKPYISISGR 93
           HF  GKP + IS R
Sbjct: 61 PHFFFGKPVVFISSR 75


>gnl|CDD|31147 COG0804, UreC, Urea amidohydrolase (urease) alpha subunit [Amino
           acid transport and metabolism].
          Length = 568

 Score = 25.2 bits (55), Expect = 6.3
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 18/100 (18%)

Query: 5   IGSDIVSIQR----ISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFS 60
           I SD  ++ R    I+R  Q+ ++  + R   +L +D       RV    KR+ AK   +
Sbjct: 358 ISSDSQAMGRVGEVITRTWQTADKMKKQR--GALPEDAGGNDNFRV----KRYIAKYTIN 411

Query: 61  KAIGTGISKGV------SWKDIEVCH--FPGGKPYISISG 92
            AI  GIS  V         D+ +    F G KP + + G
Sbjct: 412 PAITHGISHEVGSVEVGKLADLVLWDPAFFGVKPELVLKG 451


>gnl|CDD|32260 COG2077, Tpx, Peroxiredoxin [Posttranslational modification,
           protein turnover, chaperones].
          Length = 158

 Score = 24.8 bits (54), Expect = 6.9
 Identities = 9/20 (45%), Positives = 9/20 (45%)

Query: 104 KGYKPVVHLTISDDFPFAQA 123
                 V L IS D PFAQ 
Sbjct: 72  AKLGNTVVLCISMDLPFAQK 91


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.323    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0726    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,558,567
Number of extensions: 72623
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 12
Length of query: 132
Length of database: 6,263,737
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,470,190
Effective search space: 219039310
Effective search space used: 219039310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (23.8 bits)