RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780938|ref|YP_003065351.1| 4'-phosphopantetheinyl
transferase [Candidatus Liberibacter asiaticus str. psy62]
         (132 letters)



>3h88_A Holo-[acyl-carrier-protein] synthase; alpha-beta structure,
           structural genomics of infectious diseases, cytoplasm,
           fatty acid biosynthesis; HET: COA; 1.85A {Vibrio
           cholerae}
          Length = 129

 Score =  133 bits (335), Expect = 2e-32
 Identities = 50/128 (39%), Positives = 78/128 (60%), Gaps = 4/128 (3%)

Query: 1   MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFS 60
           MI+G+G+DI  I+R+ + L      F  R  +  E +    S  +    AKRFAAKEA S
Sbjct: 4   MIVGLGTDIAEIERVEKALARSGENFARRILTDSELEQFHASKQQGRFLAKRFAAKEAAS 63

Query: 61  KAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPF 120
           KA+GTGI++GV++ D  + H   GKP + +SG+A+++ S L  +     +HL+ISD+  +
Sbjct: 64  KALGTGIAQGVTFHDFTISHDKLGKPLLILSGQAAELASQLQVEN----IHLSISDERHY 119

Query: 121 AQAFVVIE 128
           A A V++E
Sbjct: 120 AMATVILE 127


>2wds_A Holo-[acyl-carrier-protein] synthase; phosphopantetheine ARM, fatty
           acid biosynthesis, lipid synthesis, transferase,
           polyketides; HET: COA; 1.35A {Streptomyces coelicolor}
           PDB: 2wdo_A* 2jca_A 2jbz_A* 2wdy_A*
          Length = 143

 Score =  126 bits (318), Expect = 1e-30
 Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 7/128 (5%)

Query: 1   MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFS 60
            IIG+G D+  ++R    L+        R F   E  +       VAS A RFAAKEA +
Sbjct: 22  SIIGVGIDVAEVERFGAALERTPA-LAGRLFLESELLLPGGERRGVASLAARFAAKEALA 80

Query: 61  KAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPF 120
           KA+G     G+ W D EV    GG+P + ++G  +   + L         H+++S D   
Sbjct: 81  KALGAPA--GLLWTDAEVWVEAGGRPRLRVTGTVAARAAELGVAS----WHVSLSADAGI 134

Query: 121 AQAFVVIE 128
           A A V+ E
Sbjct: 135 ASAVVIAE 142


>3gwm_A Holo-[acyl-carrier-protein] synthase; HOMO-trimer, 9-stand pseudo
           beta barrel protein, cytoplasm, fatty acid biosynthesis;
           1.70A {Mycobacterium smegmatis} PDB: 3h7q_A* 3ne3_B
           3ne1_A 3hqj_A*
          Length = 129

 Score =  118 bits (298), Expect = 3e-28
 Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 13/133 (9%)

Query: 2   IIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSK 61
           I+G+G D+VSI   +  +      F         +D  D S +     A R+AAKEA  K
Sbjct: 2   IVGVGIDLVSIPDFAEQVDRPGTVFAETFTPGERRDAADKSSSAARHLAARWAAKEAVIK 61

Query: 62  AIGTGISK------GVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTIS 115
           A  +              +DIEV     G+P + +SG  +  L  +        +H++++
Sbjct: 62  AWSSSRFSKRPALPEGIHRDIEVVTDMWGRPKVRLSGEIAKHLEDV-------TIHVSLT 114

Query: 116 DDFPFAQAFVVIE 128
            +   A A  +IE
Sbjct: 115 HEDQTAAAVAIIE 127


>1fth_A ACPS, acyl carrier protein synthase; bacterial fatty acid
           biosynthesis, acyl carrier synthase, coenzyme A, X-RAY
           crystallography; HET: A3P; 1.90A {Streptococcus
           pneumoniae} SCOP: d.150.1.2 PDB: 1fte_A 1ftf_A*
          Length = 122

 Score =  115 bits (289), Expect = 4e-27
 Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 17/130 (13%)

Query: 1   MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSC--NRVASYAKRFAAKEA 58
           MI+G G DI  +  I   +      F  R  ++LE +         ++   A R++AKEA
Sbjct: 3   MIVGHGIDIEELASIESAVTRHEG-FAKRVLTALEMERFTSLKGRRQIEYLAGRWSAKEA 61

Query: 59  FSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDF 118
           FSKA+GTGISK + ++D+EV +   G PY S +  +               + L+IS   
Sbjct: 62  FSKAMGTGISK-LGFQDLEVLNNERGAPYFSQAPFSGK-------------IWLSISHTD 107

Query: 119 PFAQAFVVIE 128
            F  A V++E
Sbjct: 108 QFVTASVILE 117


>3hyk_A Holo-[acyl-carrier-protein] synthase; structural genomics,
           infectious diseases, center for structural genomics of
           infectious diseases; HET: MSE A3P; 2.31A {Bacillus
           anthracis}
          Length = 122

 Score =  114 bits (288), Expect = 5e-27
 Identities = 53/131 (40%), Positives = 69/131 (52%), Gaps = 17/131 (12%)

Query: 1   MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDL--SCNRVASYAKRFAAKEA 58
           MI+GIG DI+ + RI ++L     KF  R  +  E++V             A RFAAKEA
Sbjct: 4   MIVGIGIDIIELNRIEKMLDG-KLKFMERILTENERNVAKGLKGSRLTEFVAGRFAAKEA 62

Query: 59  FSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDF 118
           +SKA+GTGI K VS+ DIEV +   GKP +  S                 +VHL+IS   
Sbjct: 63  YSKAVGTGIGKEVSFLDIEVRNDDRGKPILITSTEH--------------IVHLSISHSK 108

Query: 119 PFAQAFVVIES 129
            FA A VV+ES
Sbjct: 109 EFAVAQVVLES 119


>3ne9_A Phosphopantethiene protein transferase, PPT1P; acyl carrier protein
           synthase, acyl carrier protein, fatty A synthase, ACPS;
           2.50A {Corynebacterium ammoniagenes}
          Length = 153

 Score =  110 bits (277), Expect = 7e-26
 Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 25/150 (16%)

Query: 1   MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCN-------------RVA 47
             + +G D+V I   +  L      FE + FS LE+       +             R  
Sbjct: 6   EAMTVGVDLVHIPGFAEQLSRPGSTFE-QVFSPLERRHAQTRRSAAADATNSSLAGSRTE 64

Query: 48  SYAKRFAAKEAFSKAIGTGIS--------KGVSWKDIEVCHFPGGKPYISISGRASDVLS 99
             A R+AAKEAF KA    I           V++ +IEV     G+  + + G  +  L 
Sbjct: 65  HLAGRWAAKEAFIKAWSQAIYGKPPVIEPDLVNFAEIEVLPDRWGRVALQLKGEVAAKLQ 124

Query: 100 SLVPKGYKPVVHLTISDDFPFAQAFVVIES 129
             +       + L+IS D  +A A  ++  
Sbjct: 125 ESIGDV---ELALSISHDGDYATALCLLRY 151


>1f7l_A Holo-(acyl carrier protein) synthase; 9-strand pseudo beta barrel
           protein, COA complex protein, coenzyme A complex,
           transferase; HET: COA; 1.50A {Bacillus subtilis} SCOP:
           d.150.1.2 PDB: 1f7t_A 1f80_A*
          Length = 121

 Score =  109 bits (275), Expect = 2e-25
 Identities = 50/131 (38%), Positives = 69/131 (52%), Gaps = 15/131 (11%)

Query: 2   IIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCD-LSCNRVASY-AKRFAAKEAF 59
           I GIG DI  ++RI+ +     ++F  R  +  E D    LS  R   + A RFAAKEAF
Sbjct: 2   IYGIGLDITELKRIASMA-GRQKRFAERILTRSELDQYYELSEKRKNEFLAGRFAAKEAF 60

Query: 60  SKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFP 119
           SKA GTGI + +S++DIE+     GKPYI  +  +               VH++I+    
Sbjct: 61  SKAFGTGIGRQLSFQDIEIRKDQNGKPYIICTKLS------------PAAVHVSITHTKE 108

Query: 120 FAQAFVVIESL 130
           +A A VVIE L
Sbjct: 109 YAAAQVVIERL 119


>3hqj_A Holo-[acyl-carrier-protein] synthase; AN/fold, structural genomics,
           israel structural proteomics center, ISPC, cytoplasm;
           HET: COA; 1.95A {Mycobacterium tuberculosis}
          Length = 130

 Score =  108 bits (270), Expect = 5e-25
 Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 13/135 (9%)

Query: 1   MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFS 60
            I+G+G D+VSI   +  +      F         +D  D S +     A R+AAKEA  
Sbjct: 2   GIVGVGIDLVSIPDFAEQVDQPGTVFMETFTPGERRDASDKSSSAARHLAARWAAKEAVI 61

Query: 61  KAIGTGI------SKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTI 114
           KA                 +DIEV     G+P + ++G  ++ L+ +        +H+++
Sbjct: 62  KAWSGSRFAQRPMLPEDIHRDIEVVTDMWGRPRVRLTGAIAEYLADV-------TIHVSL 114

Query: 115 SDDFPFAQAFVVIES 129
           + +   A A  ++E+
Sbjct: 115 THEGDTAAAVAILEA 129


>2bdd_A ACP-synthase; structural genomics, structural genomics consortium,
           SGC, transferase; 2.28A {Plasmodium yoelii yoelii}
          Length = 182

 Score =  107 bits (269), Expect = 6e-25
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 32/156 (20%)

Query: 1   MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRV-------------- 46
            IIGIG+DI+ + RI ++L+  N  F  +  +  E    +    ++              
Sbjct: 23  HIIGIGTDILCVNRIYKILEK-NINFIKKVLNPFELAEFETQKKKLNEKINKSNELKKLA 81

Query: 47  ASYAKRFAAKEAFSKAIGTGIS----KGVSWKDIEVCHFPGGKPYISISGRASDVLSSLV 102
              +K+FAAKEA  K++G G+S     G+S  DIE+ +   GKP++ + G+A  V   + 
Sbjct: 82  IYVSKKFAAKEAILKSMGRGLSSISKYGLSMNDIEIKNDKYGKPHVYLYGKAKKVAYEM- 140

Query: 103 PKGYKPVVHLTISDD---------FPFAQAFVVIES 129
               K  + L+ISD+                 +I++
Sbjct: 141 -GIVK--IFLSISDEKIINSQTNNISSNFPTFIIQA 173


>2qg8_A Acyl carrier protein synthase PY06285; malaria, 3'5'ADP, SGC,
           structural genomics consortium, transferase; HET: A3P;
           2.00A {Plasmodium yoelii yoelii}
          Length = 163

 Score =  105 bits (262), Expect = 5e-24
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 32/156 (20%)

Query: 1   MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNR--------------V 46
            IIGIG+DI+ + RI ++L+  N  F  +  +  E    +    +               
Sbjct: 4   HIIGIGTDILCVNRIYKILEK-NINFIKKVLNPFELAEFETQKKKLNEKINKSNELKKLA 62

Query: 47  ASYAKRFAAKEAFSKAIGTGISK----GVSWKDIEVCHFPGGKPYISISGRASDVLSSLV 102
              +K+FAAKEA  K++G G+S     G+S  DIE+ +   GKP++ + G+A  V   + 
Sbjct: 63  IYVSKKFAAKEAILKSMGRGLSSISKYGLSMNDIEIKNDKYGKPHVYLYGKAKKVAYEM- 121

Query: 103 PKGYKPVVHLTISDD---------FPFAQAFVVIES 129
               K  + L+ISD+                 +I++
Sbjct: 122 -GIVK--IFLSISDEKIINSQTNNISSNFPTFIIQA 154


>2jbz_A Holo-[acyl-carrier-protein] synthase; ACP, magnesium, coenzyme A,
           transferase, poliketides, metal- binding, lipid
           synthesis; HET: COA; 1.62A {Streptomyces coelicolor}
           PDB: 2jca_A
          Length = 143

 Score =  103 bits (259), Expect = 9e-24
 Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 7/128 (5%)

Query: 1   MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFS 60
            IIG+G D+  ++R    L+        R F   E  +       VAS A RFAAKEA  
Sbjct: 22  SIIGVGIDVAEVERFGAALERTPA-LAGRLFLESELLLPGGERRGVASLAARFAAKEAL- 79

Query: 61  KAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPF 120
            A   G   G+ W D EV    GG+P + ++G  +   + L         H+++S D   
Sbjct: 80  -AKALGAPAGLLWTDAEVWVEAGGRPRLRVTGTVAARAAELGVAS----WHVSLSHDAGI 134

Query: 121 AQAFVVIE 128
           A A V+ E
Sbjct: 135 ASAVVIAE 142


>3f09_A Holo-[acyl-carrier-protein] synthase; structural genomics,
           infectious deseases, cytoplasm, fatty acid biosynthesis,
           lipid synthesis; 1.82A {Staphylococcus aureus subsp}
          Length = 143

 Score =  101 bits (253), Expect = 4e-23
 Identities = 46/131 (35%), Positives = 63/131 (48%), Gaps = 19/131 (14%)

Query: 1   MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLS---CNRVASYAKRFAAKE 57
           MI GIG D++ I RI  L  S   K   R  +  EQ   +       ++   A RFA KE
Sbjct: 25  MIHGIGVDLIEIDRIQALY-SKQPKLVERILTKNEQHKFNNFTHEQRKIEFLAGRFATKE 83

Query: 58  AFSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDD 117
           AFSKA+GTG+ K V++ DI+  +   GKP I   G                 VH++IS  
Sbjct: 84  AFSKALGTGLGKHVAFNDIDCYNDELGKPKIDYEGFI---------------VHVSISHT 128

Query: 118 FPFAQAFVVIE 128
             +A + VV+E
Sbjct: 129 EHYAMSQVVLE 139


>2was_A 3-oxoacyl-[acyl-carrier-protein] synthase; COA, FAS, PPT, NAD,
           NADP, transferase, phosphoprotein, oxidoreductase, lipid
           synthesis; 1.90A {Saccharomyces cerevisiae} PDB: 2wat_A*
           2was_B
          Length = 122

 Score = 98.2 bits (244), Expect = 5e-22
 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 9/126 (7%)

Query: 4   GIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSKAI 63
           G+G D+  I  I+      N  F  R F+  E + C    +  +S+A  ++AKEA  K++
Sbjct: 3   GVGVDVELITSINV----ENDTFIERNFTPQEIEYCSAQPSVQSSFAGTWSAKEAVFKSL 58

Query: 64  GT-GISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFAQ 122
           G   +  G + KDIE+       P + + G A               V ++IS D   A 
Sbjct: 59  GVKSLGGGAALKDIEIVRVNKNAPAVELHGNAKKAAEEAGVTD----VKVSISHDDLQAV 114

Query: 123 AFVVIE 128
           A  V  
Sbjct: 115 AVAVST 120


>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
            reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
            {Thermomyces lanuginosus} PDB: 2uvb_A*
          Length = 1878

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 5/109 (4%)

Query: 22   FNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSKAIGT-GISKGVSWKDIEVCH 80
             N +F SR F+  EQ  C  + N  AS+A R+ AKEA  K++G      G + ++IEV +
Sbjct: 1774 DNEEFISRNFTEREQAYCRRAPNPRASFAGRWTAKEAIFKSLGVASKGAGAAMREIEVIN 1833

Query: 81   FPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFAQAFVVIES 129
               G P + + G A++        G K  V+++IS     A A  V  +
Sbjct: 1834 DANGAPEVHLHGAAAEAAKQA---GVKT-VNVSISHGDLQAVAVAVSRT 1878


>2c43_A Aminoadipate-semialdehyde dehydrogenase- phosphopantetheinyl
           transferase; fatty acid biosynthesis, phosphopantetheine
           transferase, coenzyme A; HET: COA; 1.93A {Homo sapiens}
           PDB: 2byd_A* 2cg5_A*
          Length = 323

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 3   IGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRF---AAKEAF 59
           + +G DI+      R           R F++ E +      +        +   A KE+F
Sbjct: 134 LQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESF 193

Query: 60  SKAIGTGISKGVSWKDIEVCHFPGGKPYISISGR 93
            KAIG G+   +   + ++         +    R
Sbjct: 194 IKAIGVGLGFELQRLEFDLSPLNLDIGQVYKETR 227


>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
            malonyl/palmitoyl transferase, phosphopantetheine,
            transferase; HET: GVL FMN; 3.10A {Saccharomyces
            cerevisiae} PDB: 2vkz_A* 3hmj_A*
          Length = 1887

 Score = 41.6 bits (97), Expect = 6e-05
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 18   LLQSFNRK---FESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSKAIGT-GISKGVSW 73
            L+ S N +   F  R F+  E + C    +  +S+A  ++AKEA  K++G   +  G + 
Sbjct: 1775 LITSINVENDTFIERNFTPQEIEYCSAQPSVQSSFAGTWSAKEAVFKSLGVKSLGGGAAL 1834

Query: 74   KDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPV 109
            KDIE+       P + + G A          G   V
Sbjct: 1835 KDIEIVRVNKNAPAVELHGNAKKAAEEA---GVTDV 1867


>1qr0_A 4'-phosphopantetheinyl transferase SFP; protein-coenzyme A complex;
           HET: COA; 1.90A {Bacillus subtilis} SCOP: d.150.1.1
           d.150.1.1
          Length = 228

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 12/130 (9%)

Query: 5   IGSDIVSIQRIS-RLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSKAI 63
           IG DI   + IS  + + F  K E     + ++D       +   +   ++ KE+F K  
Sbjct: 104 IGIDIEKTKPISLEIAKRFFSKTEYSDLLAKDKD------EQTDYFYHLWSMKESFIKQE 157

Query: 64  GTGISKGVSWKDIEVCHFPGGKPYISISGRASD--VLSSLVPKGYKPVVHLTISDDFPFA 121
           G G+S  +      V     G+  I +    S   + +  V  GYK  V      DFP  
Sbjct: 158 GKGLSLPL--DSFSVRLHQDGQVSIELPDSHSPCYIKTYEVDPGYKMAV-CAAHPDFPED 214

Query: 122 QAFVVIESLL 131
              V  E LL
Sbjct: 215 ITMVSYEELL 224


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.6 bits (74), Expect = 0.029
 Identities = 34/217 (15%), Positives = 52/217 (23%), Gaps = 116/217 (53%)

Query: 12  IQRISRLLQSFNRKFESRCFSSLEQDVCDL----------------------------SC 43
           I+  +  L                 D   +                            SC
Sbjct: 188 IKFSAETLSE---------LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238

Query: 44  -----NRVASYAKRFAAK----------EAFSKAIGTGISKGV----------SWKD--- 75
                 ++A Y     AK               A  TG S+G+          SW+    
Sbjct: 239 PLIGVIQLAHYV--VTAKLLGFTPGELRSYLKGA--TGHSQGLVTAVAIAETDSWESFFV 294

Query: 76  -----IEV-------CH--FP--------------GGK----PYISISGRASDVLSSLVP 103
                I V       C+  +P                +    P +SIS    + +   V 
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354

Query: 104 K--GYKPVV-HLTISDDFPF----AQAFVV---IESL 130
           K   + P    + IS         A+  VV    +SL
Sbjct: 355 KTNSHLPAGKQVEIS-----LVNGAKNLVVSGPPQSL 386



 Score = 27.6 bits (61), Expect = 0.91
 Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 36/117 (30%)

Query: 18  LLQSFNRKF----ESRCF-SSLEQD--VCDLSCNRV--ASYAKRFAAKEAFSKAIGTGIS 68
            L  F   +    +     + L Q+     +    +       R  AK  F K   + + 
Sbjct: 87  CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146

Query: 69  KGVSWKDIE---VCHFPGG------------------KPYIS--ISGRASDVLSSLV 102
           + V   + +   +  F GG                     +   I   +++ LS L+
Sbjct: 147 RAVGEGNAQLVAI--F-GGQGNTDDYFEELRDLYQTYHVLVGDLIK-FSAETLSELI 199


>3mu7_A XAIP-II, xylanase and alpha-amylase inhibitor protein; TIM
          barell, amylase/xylanase inhibitory protein, hydrolase
          I; 1.29A {Scadoxus multiflorus} PDB: 3d5h_A 3hu7_A
          3m7s_A*
          Length = 273

 Score = 25.5 bits (55), Expect = 3.8
 Identities = 9/32 (28%), Positives = 11/32 (34%)

Query: 66 GISKGVSWKDIEVCHFPGGKPYISISGRASDV 97
          G S       I+ C     K  +SI G A   
Sbjct: 50 GHSPKGLEPQIKHCQSKNVKVLLSIGGPAGPY 81


>3lyk_A Stringent starvation protein A homolog; structural genomics,
           GST-superfamily, SSPA, PSI-2, protein structure
           initiative; 2.10A {Haemophilus influenzae}
          Length = 216

 Score = 25.4 bits (55), Expect = 3.9
 Identities = 5/36 (13%), Positives = 15/36 (41%)

Query: 29  RCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSKAIG 64
                L  +        + +Y +R   +++F +++G
Sbjct: 162 WKLKHLGVEFTGTGSKAIKAYMERVFTRDSFLQSVG 197


>2gsj_A Protein PPL-2; mimosoideae, chimerolectin, endochitinase,
          glycosyl hydrolase family 18, equilibrium
          sedimentation, X-RAY; 1.73A {Parkia platycephala}
          Length = 271

 Score = 25.4 bits (55), Expect = 4.5
 Identities = 7/20 (35%), Positives = 8/20 (40%)

Query: 73 WKDIEVCHFPGGKPYISISG 92
             I  C   G K  +SI G
Sbjct: 61 SDGIRACQRRGIKVMLSIGG 80


>3ian_A Chitinase; structural genomics, hydrolase, glycosidase, PSI-2,
           protein structure initiative; 1.75A {Lactococcus lactis
           subsp}
          Length = 321

 Score = 25.2 bits (54), Expect = 4.6
 Identities = 4/28 (14%), Positives = 10/28 (35%)

Query: 73  WKDIEVCHFPGGKPYISISGRASDVLSS 100
             +I   +  G    I++ G  + +   
Sbjct: 69  RAEISKLNAEGKSVLIALGGADAHIELK 96


>2hvm_A Hevamine; hydrolase, chitinase/lysozyme; 1.80A {Hevea
          brasiliensis} SCOP: c.1.8.5 PDB: 1hvq_A* 1llo_A 1kr0_A*
          1kr1_A* 1kqy_A* 1kqz_A*
          Length = 273

 Score = 24.7 bits (53), Expect = 7.4
 Identities = 6/20 (30%), Positives = 8/20 (40%)

Query: 73 WKDIEVCHFPGGKPYISISG 92
             I  C   G K  +S+ G
Sbjct: 61 SNGIRSCQIQGIKVMLSLGG 80


>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural genomics,
           joint center for structural genomics, JCSG; 2.10A
           {Thermotoga maritima MSB8} SCOP: c.37.1.12
          Length = 256

 Score = 24.5 bits (53), Expect = 8.7
 Identities = 8/42 (19%), Positives = 23/42 (54%)

Query: 6   GSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVA 47
           G D+++ + + ++L+  +++  +   SS      +  C+R+A
Sbjct: 176 GLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIA 217


>3byq_A Uncharacterized protein DUF1185; NP_889209.1, protein of unknown
           function (DUF1185), structural genomics; HET: MSE PG4;
           1.70A {Bordetella bronchiseptica RB50} SCOP: d.79.9.1
          Length = 193

 Score = 24.3 bits (53), Expect = 9.1
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 57  EAFSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSS 100
           E +SKA   G+      +   V H  GG    S+ G    ++ +
Sbjct: 78  EVYSKAAIVGV--DGEMEHGAVWHEAGGWAMRSVLGEPKAMVPA 119


>1k32_A Tricorn protease; protein degradation, substrate gating, serine
           protease, beta propeller, proteasome, hydrolase; 2.00A
           {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
           b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
          Length = 1045

 Score = 24.0 bits (51), Expect = 9.5
 Identities = 8/48 (16%), Positives = 17/48 (35%)

Query: 58  AFSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKG 105
           A+   +  G + G   + I V    G K + + +  + D   +     
Sbjct: 436 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADS 483


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.323    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,125,230
Number of extensions: 46237
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 29
Length of query: 132
Length of database: 5,693,230
Length adjustment: 82
Effective length of query: 50
Effective length of database: 3,705,222
Effective search space: 185261100
Effective search space used: 185261100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)