RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780938|ref|YP_003065351.1| 4'-phosphopantetheinyl transferase [Candidatus Liberibacter asiaticus str. psy62] (132 letters) >3h88_A Holo-[acyl-carrier-protein] synthase; alpha-beta structure, structural genomics of infectious diseases, cytoplasm, fatty acid biosynthesis; HET: COA; 1.85A {Vibrio cholerae} Length = 129 Score = 133 bits (335), Expect = 2e-32 Identities = 50/128 (39%), Positives = 78/128 (60%), Gaps = 4/128 (3%) Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFS 60 MI+G+G+DI I+R+ + L F R + E + S + AKRFAAKEA S Sbjct: 4 MIVGLGTDIAEIERVEKALARSGENFARRILTDSELEQFHASKQQGRFLAKRFAAKEAAS 63 Query: 61 KAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPF 120 KA+GTGI++GV++ D + H GKP + +SG+A+++ S L + +HL+ISD+ + Sbjct: 64 KALGTGIAQGVTFHDFTISHDKLGKPLLILSGQAAELASQLQVEN----IHLSISDERHY 119 Query: 121 AQAFVVIE 128 A A V++E Sbjct: 120 AMATVILE 127 >2wds_A Holo-[acyl-carrier-protein] synthase; phosphopantetheine ARM, fatty acid biosynthesis, lipid synthesis, transferase, polyketides; HET: COA; 1.35A {Streptomyces coelicolor} PDB: 2wdo_A* 2jca_A 2jbz_A* 2wdy_A* Length = 143 Score = 126 bits (318), Expect = 1e-30 Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 7/128 (5%) Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFS 60 IIG+G D+ ++R L+ R F E + VAS A RFAAKEA + Sbjct: 22 SIIGVGIDVAEVERFGAALERTPA-LAGRLFLESELLLPGGERRGVASLAARFAAKEALA 80 Query: 61 KAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPF 120 KA+G G+ W D EV GG+P + ++G + + L H+++S D Sbjct: 81 KALGAPA--GLLWTDAEVWVEAGGRPRLRVTGTVAARAAELGVAS----WHVSLSADAGI 134 Query: 121 AQAFVVIE 128 A A V+ E Sbjct: 135 ASAVVIAE 142 >3gwm_A Holo-[acyl-carrier-protein] synthase; HOMO-trimer, 9-stand pseudo beta barrel protein, cytoplasm, fatty acid biosynthesis; 1.70A {Mycobacterium smegmatis} PDB: 3h7q_A* 3ne3_B 3ne1_A 3hqj_A* Length = 129 Score = 118 bits (298), Expect = 3e-28 Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 13/133 (9%) Query: 2 IIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSK 61 I+G+G D+VSI + + F +D D S + A R+AAKEA K Sbjct: 2 IVGVGIDLVSIPDFAEQVDRPGTVFAETFTPGERRDAADKSSSAARHLAARWAAKEAVIK 61 Query: 62 AIGTGISK------GVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTIS 115 A + +DIEV G+P + +SG + L + +H++++ Sbjct: 62 AWSSSRFSKRPALPEGIHRDIEVVTDMWGRPKVRLSGEIAKHLEDV-------TIHVSLT 114 Query: 116 DDFPFAQAFVVIE 128 + A A +IE Sbjct: 115 HEDQTAAAVAIIE 127 >1fth_A ACPS, acyl carrier protein synthase; bacterial fatty acid biosynthesis, acyl carrier synthase, coenzyme A, X-RAY crystallography; HET: A3P; 1.90A {Streptococcus pneumoniae} SCOP: d.150.1.2 PDB: 1fte_A 1ftf_A* Length = 122 Score = 115 bits (289), Expect = 4e-27 Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 17/130 (13%) Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSC--NRVASYAKRFAAKEA 58 MI+G G DI + I + F R ++LE + ++ A R++AKEA Sbjct: 3 MIVGHGIDIEELASIESAVTRHEG-FAKRVLTALEMERFTSLKGRRQIEYLAGRWSAKEA 61 Query: 59 FSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDF 118 FSKA+GTGISK + ++D+EV + G PY S + + + L+IS Sbjct: 62 FSKAMGTGISK-LGFQDLEVLNNERGAPYFSQAPFSGK-------------IWLSISHTD 107 Query: 119 PFAQAFVVIE 128 F A V++E Sbjct: 108 QFVTASVILE 117 >3hyk_A Holo-[acyl-carrier-protein] synthase; structural genomics, infectious diseases, center for structural genomics of infectious diseases; HET: MSE A3P; 2.31A {Bacillus anthracis} Length = 122 Score = 114 bits (288), Expect = 5e-27 Identities = 53/131 (40%), Positives = 69/131 (52%), Gaps = 17/131 (12%) Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDL--SCNRVASYAKRFAAKEA 58 MI+GIG DI+ + RI ++L KF R + E++V A RFAAKEA Sbjct: 4 MIVGIGIDIIELNRIEKMLDG-KLKFMERILTENERNVAKGLKGSRLTEFVAGRFAAKEA 62 Query: 59 FSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDF 118 +SKA+GTGI K VS+ DIEV + GKP + S +VHL+IS Sbjct: 63 YSKAVGTGIGKEVSFLDIEVRNDDRGKPILITSTEH--------------IVHLSISHSK 108 Query: 119 PFAQAFVVIES 129 FA A VV+ES Sbjct: 109 EFAVAQVVLES 119 >3ne9_A Phosphopantethiene protein transferase, PPT1P; acyl carrier protein synthase, acyl carrier protein, fatty A synthase, ACPS; 2.50A {Corynebacterium ammoniagenes} Length = 153 Score = 110 bits (277), Expect = 7e-26 Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 25/150 (16%) Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCN-------------RVA 47 + +G D+V I + L FE + FS LE+ + R Sbjct: 6 EAMTVGVDLVHIPGFAEQLSRPGSTFE-QVFSPLERRHAQTRRSAAADATNSSLAGSRTE 64 Query: 48 SYAKRFAAKEAFSKAIGTGIS--------KGVSWKDIEVCHFPGGKPYISISGRASDVLS 99 A R+AAKEAF KA I V++ +IEV G+ + + G + L Sbjct: 65 HLAGRWAAKEAFIKAWSQAIYGKPPVIEPDLVNFAEIEVLPDRWGRVALQLKGEVAAKLQ 124 Query: 100 SLVPKGYKPVVHLTISDDFPFAQAFVVIES 129 + + L+IS D +A A ++ Sbjct: 125 ESIGDV---ELALSISHDGDYATALCLLRY 151 >1f7l_A Holo-(acyl carrier protein) synthase; 9-strand pseudo beta barrel protein, COA complex protein, coenzyme A complex, transferase; HET: COA; 1.50A {Bacillus subtilis} SCOP: d.150.1.2 PDB: 1f7t_A 1f80_A* Length = 121 Score = 109 bits (275), Expect = 2e-25 Identities = 50/131 (38%), Positives = 69/131 (52%), Gaps = 15/131 (11%) Query: 2 IIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCD-LSCNRVASY-AKRFAAKEAF 59 I GIG DI ++RI+ + ++F R + E D LS R + A RFAAKEAF Sbjct: 2 IYGIGLDITELKRIASMA-GRQKRFAERILTRSELDQYYELSEKRKNEFLAGRFAAKEAF 60 Query: 60 SKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFP 119 SKA GTGI + +S++DIE+ GKPYI + + VH++I+ Sbjct: 61 SKAFGTGIGRQLSFQDIEIRKDQNGKPYIICTKLS------------PAAVHVSITHTKE 108 Query: 120 FAQAFVVIESL 130 +A A VVIE L Sbjct: 109 YAAAQVVIERL 119 >3hqj_A Holo-[acyl-carrier-protein] synthase; AN/fold, structural genomics, israel structural proteomics center, ISPC, cytoplasm; HET: COA; 1.95A {Mycobacterium tuberculosis} Length = 130 Score = 108 bits (270), Expect = 5e-25 Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 13/135 (9%) Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFS 60 I+G+G D+VSI + + F +D D S + A R+AAKEA Sbjct: 2 GIVGVGIDLVSIPDFAEQVDQPGTVFMETFTPGERRDASDKSSSAARHLAARWAAKEAVI 61 Query: 61 KAIGTGI------SKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTI 114 KA +DIEV G+P + ++G ++ L+ + +H+++ Sbjct: 62 KAWSGSRFAQRPMLPEDIHRDIEVVTDMWGRPRVRLTGAIAEYLADV-------TIHVSL 114 Query: 115 SDDFPFAQAFVVIES 129 + + A A ++E+ Sbjct: 115 THEGDTAAAVAILEA 129 >2bdd_A ACP-synthase; structural genomics, structural genomics consortium, SGC, transferase; 2.28A {Plasmodium yoelii yoelii} Length = 182 Score = 107 bits (269), Expect = 6e-25 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 32/156 (20%) Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRV-------------- 46 IIGIG+DI+ + RI ++L+ N F + + E + ++ Sbjct: 23 HIIGIGTDILCVNRIYKILEK-NINFIKKVLNPFELAEFETQKKKLNEKINKSNELKKLA 81 Query: 47 ASYAKRFAAKEAFSKAIGTGIS----KGVSWKDIEVCHFPGGKPYISISGRASDVLSSLV 102 +K+FAAKEA K++G G+S G+S DIE+ + GKP++ + G+A V + Sbjct: 82 IYVSKKFAAKEAILKSMGRGLSSISKYGLSMNDIEIKNDKYGKPHVYLYGKAKKVAYEM- 140 Query: 103 PKGYKPVVHLTISDD---------FPFAQAFVVIES 129 K + L+ISD+ +I++ Sbjct: 141 -GIVK--IFLSISDEKIINSQTNNISSNFPTFIIQA 173 >2qg8_A Acyl carrier protein synthase PY06285; malaria, 3'5'ADP, SGC, structural genomics consortium, transferase; HET: A3P; 2.00A {Plasmodium yoelii yoelii} Length = 163 Score = 105 bits (262), Expect = 5e-24 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 32/156 (20%) Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNR--------------V 46 IIGIG+DI+ + RI ++L+ N F + + E + + Sbjct: 4 HIIGIGTDILCVNRIYKILEK-NINFIKKVLNPFELAEFETQKKKLNEKINKSNELKKLA 62 Query: 47 ASYAKRFAAKEAFSKAIGTGISK----GVSWKDIEVCHFPGGKPYISISGRASDVLSSLV 102 +K+FAAKEA K++G G+S G+S DIE+ + GKP++ + G+A V + Sbjct: 63 IYVSKKFAAKEAILKSMGRGLSSISKYGLSMNDIEIKNDKYGKPHVYLYGKAKKVAYEM- 121 Query: 103 PKGYKPVVHLTISDD---------FPFAQAFVVIES 129 K + L+ISD+ +I++ Sbjct: 122 -GIVK--IFLSISDEKIINSQTNNISSNFPTFIIQA 154 >2jbz_A Holo-[acyl-carrier-protein] synthase; ACP, magnesium, coenzyme A, transferase, poliketides, metal- binding, lipid synthesis; HET: COA; 1.62A {Streptomyces coelicolor} PDB: 2jca_A Length = 143 Score = 103 bits (259), Expect = 9e-24 Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 7/128 (5%) Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFS 60 IIG+G D+ ++R L+ R F E + VAS A RFAAKEA Sbjct: 22 SIIGVGIDVAEVERFGAALERTPA-LAGRLFLESELLLPGGERRGVASLAARFAAKEAL- 79 Query: 61 KAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPF 120 A G G+ W D EV GG+P + ++G + + L H+++S D Sbjct: 80 -AKALGAPAGLLWTDAEVWVEAGGRPRLRVTGTVAARAAELGVAS----WHVSLSHDAGI 134 Query: 121 AQAFVVIE 128 A A V+ E Sbjct: 135 ASAVVIAE 142 >3f09_A Holo-[acyl-carrier-protein] synthase; structural genomics, infectious deseases, cytoplasm, fatty acid biosynthesis, lipid synthesis; 1.82A {Staphylococcus aureus subsp} Length = 143 Score = 101 bits (253), Expect = 4e-23 Identities = 46/131 (35%), Positives = 63/131 (48%), Gaps = 19/131 (14%) Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLS---CNRVASYAKRFAAKE 57 MI GIG D++ I RI L S K R + EQ + ++ A RFA KE Sbjct: 25 MIHGIGVDLIEIDRIQALY-SKQPKLVERILTKNEQHKFNNFTHEQRKIEFLAGRFATKE 83 Query: 58 AFSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDD 117 AFSKA+GTG+ K V++ DI+ + GKP I G VH++IS Sbjct: 84 AFSKALGTGLGKHVAFNDIDCYNDELGKPKIDYEGFI---------------VHVSISHT 128 Query: 118 FPFAQAFVVIE 128 +A + VV+E Sbjct: 129 EHYAMSQVVLE 139 >2was_A 3-oxoacyl-[acyl-carrier-protein] synthase; COA, FAS, PPT, NAD, NADP, transferase, phosphoprotein, oxidoreductase, lipid synthesis; 1.90A {Saccharomyces cerevisiae} PDB: 2wat_A* 2was_B Length = 122 Score = 98.2 bits (244), Expect = 5e-22 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 9/126 (7%) Query: 4 GIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSKAI 63 G+G D+ I I+ N F R F+ E + C + +S+A ++AKEA K++ Sbjct: 3 GVGVDVELITSINV----ENDTFIERNFTPQEIEYCSAQPSVQSSFAGTWSAKEAVFKSL 58 Query: 64 GT-GISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFAQ 122 G + G + KDIE+ P + + G A V ++IS D A Sbjct: 59 GVKSLGGGAALKDIEIVRVNKNAPAVELHGNAKKAAEEAGVTD----VKVSISHDDLQAV 114 Query: 123 AFVVIE 128 A V Sbjct: 115 AVAVST 120 >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878 Score = 46.6 bits (110), Expect = 2e-06 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 5/109 (4%) Query: 22 FNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSKAIGT-GISKGVSWKDIEVCH 80 N +F SR F+ EQ C + N AS+A R+ AKEA K++G G + ++IEV + Sbjct: 1774 DNEEFISRNFTEREQAYCRRAPNPRASFAGRWTAKEAIFKSLGVASKGAGAAMREIEVIN 1833 Query: 81 FPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFAQAFVVIES 129 G P + + G A++ G K V+++IS A A V + Sbjct: 1834 DANGAPEVHLHGAAAEAAKQA---GVKT-VNVSISHGDLQAVAVAVSRT 1878 >2c43_A Aminoadipate-semialdehyde dehydrogenase- phosphopantetheinyl transferase; fatty acid biosynthesis, phosphopantetheine transferase, coenzyme A; HET: COA; 1.93A {Homo sapiens} PDB: 2byd_A* 2cg5_A* Length = 323 Score = 43.6 bits (102), Expect = 1e-05 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 3/94 (3%) Query: 3 IGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRF---AAKEAF 59 + +G DI+ R R F++ E + + + A KE+F Sbjct: 134 LQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESF 193 Query: 60 SKAIGTGISKGVSWKDIEVCHFPGGKPYISISGR 93 KAIG G+ + + ++ + R Sbjct: 194 IKAIGVGLGFELQRLEFDLSPLNLDIGQVYKETR 227 >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887 Score = 41.6 bits (97), Expect = 6e-05 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 7/96 (7%) Query: 18 LLQSFNRK---FESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSKAIGT-GISKGVSW 73 L+ S N + F R F+ E + C + +S+A ++AKEA K++G + G + Sbjct: 1775 LITSINVENDTFIERNFTPQEIEYCSAQPSVQSSFAGTWSAKEAVFKSLGVKSLGGGAAL 1834 Query: 74 KDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPV 109 KDIE+ P + + G A G V Sbjct: 1835 KDIEIVRVNKNAPAVELHGNAKKAAEEA---GVTDV 1867 >1qr0_A 4'-phosphopantetheinyl transferase SFP; protein-coenzyme A complex; HET: COA; 1.90A {Bacillus subtilis} SCOP: d.150.1.1 d.150.1.1 Length = 228 Score = 36.6 bits (84), Expect = 0.002 Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 12/130 (9%) Query: 5 IGSDIVSIQRIS-RLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSKAI 63 IG DI + IS + + F K E + ++D + + ++ KE+F K Sbjct: 104 IGIDIEKTKPISLEIAKRFFSKTEYSDLLAKDKD------EQTDYFYHLWSMKESFIKQE 157 Query: 64 GTGISKGVSWKDIEVCHFPGGKPYISISGRASD--VLSSLVPKGYKPVVHLTISDDFPFA 121 G G+S + V G+ I + S + + V GYK V DFP Sbjct: 158 GKGLSLPL--DSFSVRLHQDGQVSIELPDSHSPCYIKTYEVDPGYKMAV-CAAHPDFPED 214 Query: 122 QAFVVIESLL 131 V E LL Sbjct: 215 ITMVSYEELL 224 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 32.6 bits (74), Expect = 0.029 Identities = 34/217 (15%), Positives = 52/217 (23%), Gaps = 116/217 (53%) Query: 12 IQRISRLLQSFNRKFESRCFSSLEQDVCDL----------------------------SC 43 I+ + L D + SC Sbjct: 188 IKFSAETLSE---------LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238 Query: 44 -----NRVASYAKRFAAK----------EAFSKAIGTGISKGV----------SWKD--- 75 ++A Y AK A TG S+G+ SW+ Sbjct: 239 PLIGVIQLAHYV--VTAKLLGFTPGELRSYLKGA--TGHSQGLVTAVAIAETDSWESFFV 294 Query: 76 -----IEV-------CH--FP--------------GGK----PYISISGRASDVLSSLVP 103 I V C+ +P + P +SIS + + V Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354 Query: 104 K--GYKPVV-HLTISDDFPF----AQAFVV---IESL 130 K + P + IS A+ VV +SL Sbjct: 355 KTNSHLPAGKQVEIS-----LVNGAKNLVVSGPPQSL 386 Score = 27.6 bits (61), Expect = 0.91 Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 36/117 (30%) Query: 18 LLQSFNRKF----ESRCF-SSLEQD--VCDLSCNRV--ASYAKRFAAKEAFSKAIGTGIS 68 L F + + + L Q+ + + R AK F K + + Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146 Query: 69 KGVSWKDIE---VCHFPGG------------------KPYIS--ISGRASDVLSSLV 102 + V + + + F GG + I +++ LS L+ Sbjct: 147 RAVGEGNAQLVAI--F-GGQGNTDDYFEELRDLYQTYHVLVGDLIK-FSAETLSELI 199 >3mu7_A XAIP-II, xylanase and alpha-amylase inhibitor protein; TIM barell, amylase/xylanase inhibitory protein, hydrolase I; 1.29A {Scadoxus multiflorus} PDB: 3d5h_A 3hu7_A 3m7s_A* Length = 273 Score = 25.5 bits (55), Expect = 3.8 Identities = 9/32 (28%), Positives = 11/32 (34%) Query: 66 GISKGVSWKDIEVCHFPGGKPYISISGRASDV 97 G S I+ C K +SI G A Sbjct: 50 GHSPKGLEPQIKHCQSKNVKVLLSIGGPAGPY 81 >3lyk_A Stringent starvation protein A homolog; structural genomics, GST-superfamily, SSPA, PSI-2, protein structure initiative; 2.10A {Haemophilus influenzae} Length = 216 Score = 25.4 bits (55), Expect = 3.9 Identities = 5/36 (13%), Positives = 15/36 (41%) Query: 29 RCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSKAIG 64 L + + +Y +R +++F +++G Sbjct: 162 WKLKHLGVEFTGTGSKAIKAYMERVFTRDSFLQSVG 197 >2gsj_A Protein PPL-2; mimosoideae, chimerolectin, endochitinase, glycosyl hydrolase family 18, equilibrium sedimentation, X-RAY; 1.73A {Parkia platycephala} Length = 271 Score = 25.4 bits (55), Expect = 4.5 Identities = 7/20 (35%), Positives = 8/20 (40%) Query: 73 WKDIEVCHFPGGKPYISISG 92 I C G K +SI G Sbjct: 61 SDGIRACQRRGIKVMLSIGG 80 >3ian_A Chitinase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 1.75A {Lactococcus lactis subsp} Length = 321 Score = 25.2 bits (54), Expect = 4.6 Identities = 4/28 (14%), Positives = 10/28 (35%) Query: 73 WKDIEVCHFPGGKPYISISGRASDVLSS 100 +I + G I++ G + + Sbjct: 69 RAEISKLNAEGKSVLIALGGADAHIELK 96 >2hvm_A Hevamine; hydrolase, chitinase/lysozyme; 1.80A {Hevea brasiliensis} SCOP: c.1.8.5 PDB: 1hvq_A* 1llo_A 1kr0_A* 1kr1_A* 1kqy_A* 1kqz_A* Length = 273 Score = 24.7 bits (53), Expect = 7.4 Identities = 6/20 (30%), Positives = 8/20 (40%) Query: 73 WKDIEVCHFPGGKPYISISG 92 I C G K +S+ G Sbjct: 61 SNGIRSCQIQGIKVMLSLGG 80 >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural genomics, joint center for structural genomics, JCSG; 2.10A {Thermotoga maritima MSB8} SCOP: c.37.1.12 Length = 256 Score = 24.5 bits (53), Expect = 8.7 Identities = 8/42 (19%), Positives = 23/42 (54%) Query: 6 GSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVA 47 G D+++ + + ++L+ +++ + SS + C+R+A Sbjct: 176 GLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIA 217 >3byq_A Uncharacterized protein DUF1185; NP_889209.1, protein of unknown function (DUF1185), structural genomics; HET: MSE PG4; 1.70A {Bordetella bronchiseptica RB50} SCOP: d.79.9.1 Length = 193 Score = 24.3 bits (53), Expect = 9.1 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%) Query: 57 EAFSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSS 100 E +SKA G+ + V H GG S+ G ++ + Sbjct: 78 EVYSKAAIVGV--DGEMEHGAVWHEAGGWAMRSVLGEPKAMVPA 119 >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045 Score = 24.0 bits (51), Expect = 9.5 Identities = 8/48 (16%), Positives = 17/48 (35%) Query: 58 AFSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKG 105 A+ + G + G + I V G K + + + + D + Sbjct: 436 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADS 483 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.138 0.404 Gapped Lambda K H 0.267 0.0547 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,125,230 Number of extensions: 46237 Number of successful extensions: 172 Number of sequences better than 10.0: 1 Number of HSP's gapped: 138 Number of HSP's successfully gapped: 29 Length of query: 132 Length of database: 5,693,230 Length adjustment: 82 Effective length of query: 50 Effective length of database: 3,705,222 Effective search space: 185261100 Effective search space used: 185261100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 51 (23.8 bits)