HHsearch alignment of GI: 254780939 and MMDB domain: 1kca_A_
>1kca_A (A:) Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda}
Probab=96.76 E-value=0.0037 Score=39.28 Aligned_cols=49 Identities=22% Similarity=0.208 Sum_probs=37.1
Q ss_pred EEEECCCCC------CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEE
Q ss_conf 899878667------7643369889998400587664122115422221125553347046640144200310000003
Q gi|254780939|r 37 PSVIPSGSM------IPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIG 109 (248)
Q Consensus 37 ~f~Ips~SM------~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIG 109 (248)
.++|.++|| ||++..||.++|++- ..++.||+|+.... ....++||+.-
T Consensus 15 ~~~v~GdSM~~~~~~eP~i~~Gd~iiVd~~----------------------~~~~~g~~v~v~~~--~~~~~vKrl~~ 69 (109)
T 1kca_A 15 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE----------------------QAVEPGDFCIARLG--GDEFTFKKLIR 69 (109)
T ss_dssp EEECCSSTTCCCTTCSSCCCTTCEEEEETT----------------------SCCCTTCEEEEECS--TTCEEEEEEEE
T ss_pred EEEEECCCCCCCCCCCCCCCCCCEEEEECC----------------------CCCCCCCEEEEEEC--CCCEEEEEEEE
T ss_conf 999977777888777886398999999876----------------------86578999999996--86169999999