HHsearch alignment of GI: 254780939 and MMDB domain: 2hnf_A_
>2hnf_A (A:) Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=96.71 E-value=0.0039 Score=39.18 Aligned_cols=53 Identities=19% Similarity=0.158 Sum_probs=39.0
Q ss_pred EEEECCCCC------CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEEE
Q ss_conf 899878667------76433698899984005876641221154222211255533470466401442003100000030
Q gi|254780939|r 37 PSVIPSGSM------IPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIGL 110 (248)
Q Consensus 37 ~f~Ips~SM------~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIGl 110 (248)
..+|.++|| +|++..||.|+|+.- .+++.||+|+... +.+..++||+.=-
T Consensus 46 al~v~GdSM~~~~~~eP~i~~Gd~ivv~~~----------------------~~~~~g~~vvv~~--~~~~~~iKr~~~~ 101 (133)
T 2hnf_A 46 WLEVEGNSMTTPTGSKTSFPDGMLILVDPE----------------------QAVEPGDFCIARL--GGDEFTFAKLIRD 101 (133)
T ss_dssp EEECCSSTTCCC---CCCCCTTCEEEEETT----------------------SCCCTTSEEEEEE--TTTEEEEEEEEEE
T ss_pred EEEECCCCCCCCCCCCCEECCCCEEEEECC----------------------CCCCCCCEEEEEE--ECCCEEEEEEEEE
T ss_conf 999838703577566870168819999787----------------------7567577799999--6382899999997
Q ss_pred CHH
Q ss_conf 423
Q gi|254780939|r 111 PGD 113 (248)
Q Consensus 111 PGD 113 (248)
+|.
T Consensus 102 ~~~ 104 (133)
T 2hnf_A 102 SGQ 104 (133)
T ss_dssp TTE
T ss_pred CCE
T ss_conf 998