Query gi|254780939|ref|YP_003065352.1| type I signal peptidase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 248
No_of_seqs 132 out of 2445
Neff 6.6
Searched_HMMs 33803
Date Wed Jun 1 19:27:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780939.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1b12_A Signal peptidase I; se 99.8 1.3E-20 3.8E-25 149.2 7.8 103 30-247 1-103 (104)
2 >1b12_A Signal peptidase I; se 99.7 5.2E-17 1.5E-21 126.5 4.3 69 107-210 1-69 (69)
3 >2fjr_A Repressor protein CI; 97.7 1.5E-05 4.4E-10 54.4 2.6 55 38-118 38-92 (119)
4 >1umu_A UMUD'; induced mutagen 97.7 6E-05 1.8E-09 50.6 4.8 47 37-108 29-76 (116)
5 >1kca_A Repressor protein CI; 96.8 0.0037 1.1E-07 39.3 6.0 49 37-109 15-69 (109)
6 >2hnf_A Repressor protein CI10 96.7 0.0039 1.1E-07 39.2 5.8 53 37-113 46-104 (133)
7 >3bdn_A Lambda repressor; repr 96.6 0.0038 1.1E-07 39.2 5.3 50 36-109 42-97 (137)
8 >1jhf_A LEXA repressor; LEXA S 96.5 0.0046 1.4E-07 38.7 5.1 53 37-114 40-93 (130)
9 >2vob_A Trypanothione syntheta 68.0 5.3 0.00016 19.4 3.2 40 82-121 93-132 (189)
10 >2pp6_A Gifsy-2 prophage ATP-b 66.3 4.1 0.00012 20.2 2.4 20 84-107 63-82 (102)
11 >3d3a_A Beta-galactosidase; pr 57.1 4.6 0.00014 19.8 1.3 19 111-129 4-22 (279)
12 >2io8_A Bifunctional glutathio 56.6 12 0.00035 17.3 3.3 39 83-121 110-149 (201)
13 >1wb1_A Translation elongation 48.1 16 0.00046 16.5 2.8 60 50-128 80-139 (197)
14 >1ah9_A IF1, initiation factor 44.8 7.1 0.00021 18.6 0.7 14 49-62 46-59 (71)
15 >2hbw_A NLP/P60 protein; YP_32 44.3 9.2 0.00027 17.9 1.2 35 63-97 54-88 (150)
16 >3h41_A NLP/P60 family protein 40.5 14 0.00041 16.8 1.6 34 63-96 44-77 (127)
17 >1n7z_A Baseplate structural p 33.4 26 0.00077 15.1 2.1 27 86-112 7-38 (104)
18 >3dsm_A Uncharacterized protei 28.3 33 0.00097 14.5 1.9 24 42-65 47-70 (88)
19 >2kie_A Inositol polyphosphate 24.8 42 0.0012 13.8 2.5 18 41-58 2-19 (124)
20 >3kdr_A HK97 family phage port 24.0 43 0.0013 13.7 2.7 29 106-134 91-119 (203)
21 >2dgy_A MGC11102 protein; EIF- 23.8 44 0.0013 13.7 2.4 11 85-95 54-64 (111)
22 2k3a_A Cysteine, Histidine-Dep 23.5 39 0.0012 13.9 1.6 33 82-117 91-124 (155)
23 >1dj7_B Ferredoxin thioredoxin 23.1 45 0.0013 13.6 2.1 29 88-118 11-39 (75)
24 >2vqe_Q 30S ribosomal protein 23.0 45 0.0013 13.6 3.1 75 39-117 9-86 (105)
25 >1qe5_A Pentosyltransferase; e 21.6 42 0.0013 13.7 1.4 22 42-63 120-141 (266)
26 2k1g_A Solution Nmr Structure 20.9 50 0.0015 13.3 1.9 22 76-97 59-80 (135)
27 >2yvl_A TRMI protein, hypothet 20.3 52 0.0015 13.2 2.2 34 85-123 4-37 (58)
No 1
>>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptide processing, protein translocation, membrane bound proteinase; HET: 1PN; 1.95A {Escherichia coli} (A:1-71,A:216-248)
Probab=99.83 E-value=1.3e-20 Score=149.16 Aligned_cols=103 Identities=45% Similarity=0.883 Sum_probs=85.9
Q ss_pred HHHEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEE
Q ss_conf 87516898998786677643369889998400587664122115422221125553347046640144200310000003
Q gi|254780939|r 30 IRTFLFQPSVIPSGSMIPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIG 109 (248)
Q Consensus 30 ir~fv~~~f~Ips~SM~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIG 109 (248)
+++|++|+|.|||+|||+||+.||+|+|+|++||.|.|..|.+.++.. .++.+++++..+...++..|+|
T Consensus 1 v~~~~~q~~~ipsssleksll~gd~l~vsk~~yg~~~PmTpltlPltg------Hkti~~~~~~SY~r~PqL~YvK---- 70 (104)
T 1b12_A 1 VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETG------HPKRGDIVVFKYPEDPKLDYIK---- 70 (104)
T ss_dssp -CBCCEEEEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEEC------CCCTTCEEEEECTTCTTSEEEE----
T ss_pred CEEEEEEEEEECCCCCHHHHHCCCEEEEEECCCCCCCCCCCCEEECCC------CCCCCCEEEEECCCCCCCCEEE----
T ss_conf 929999959917602611340699899993746866776585540145------5534635665024688642100----
Q ss_pred ECHHHEEECCCCEEECCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEE
Q ss_conf 04234320077324535312245446400221478620122102214678500022124557887453023244649997
Q gi|254780939|r 110 LPGDRISLEKGIIYINGAPVVRHMEGYFSYHYKEDWSSNVPIFQEKLSNGVLYNVLSQDFLAPSSNISEFLVPKGHYFMM 189 (248)
Q Consensus 110 lPGDtV~i~~~~l~INg~~i~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~VP~g~yfvl 189 (248)
T Consensus 71 -------------------------------------------------------------------------------- 70 (104)
T 1b12_A 71 -------------------------------------------------------------------------------- 70 (104)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred ECCCCCCCCCCCCCCCCCCHHHEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHCCCC
Q ss_conf 1788777644536530260888253389999743788775435554567013342232
Q gi|254780939|r 190 GDNRDKSKDSRWVEVGFVPEENLVGRASFVLFSIGGDTPFSKVWLWIPNMRWDRLFKI 247 (248)
Q Consensus 190 GDNRdnS~DSR~~~~G~Vp~~~IvGka~~i~~S~d~~~~~~~~~~~~~~iRw~R~f~~ 247 (248)
.|++|||.+||+|++.+.. +|+.++|.+|+++.
T Consensus 71 --------------------R~~~g~~~~iw~~~~~~~~-----~wp~g~~~~rig~i 103 (104)
T 1b12_A 71 --------------------RNLVGRATAIWMSFDKQEG-----EWPTGLRLSRIGGI 103 (104)
T ss_dssp --------------------EGEEEEEEEEEEEBC-------------CBCGGGCBCC
T ss_pred --------------------CHEEEEEEEEEEECCCCCC-----CCCCCCCCCCCCCC
T ss_conf --------------------2948888999997888767-----57677631136037
No 2
>>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptide processing, protein translocation, membrane bound proteinase; HET: 1PN; 1.95A {Escherichia coli} (A:72-99,A:175-215)
Probab=99.66 E-value=5.2e-17 Score=126.45 Aligned_cols=69 Identities=42% Similarity=0.790 Sum_probs=54.9
Q ss_pred EEEECHHHEEECCCCEEECCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEE
Q ss_conf 00304234320077324535312245446400221478620122102214678500022124557887453023244649
Q gi|254780939|r 107 VIGLPGDRISLEKGIIYINGAPVVRHMEGYFSYHYKEDWSSNVPIFQEKLSNGVLYNVLSQDFLAPSSNISEFLVPKGHY 186 (248)
Q Consensus 107 vIGlPGDtV~i~~~~l~INg~~i~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~VP~g~y 186 (248)
+||||||+|.+..-.+.+|+|+....- .....+.....+++||+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~tVPeg~y 47 (69)
T 1b12_A 1 AVGLPGDKVTYDPVSKELTIQPGCSSG---------------------------------QYYQQPGQQLATWIVPPGQY 47 (69)
T ss_dssp EEECTTCEEEEETTTTEEEEETTCCSS---------------------------------CSCCCTTCCTTEEECCTTEE
T ss_pred CCCCCCCEEEEECCCCEEEEECCCCCC---------------------------------ECCCCCCCCCCEEEEECCEE
T ss_conf 446788668960455247860145556---------------------------------00047865352189608859
Q ss_pred EEEECCCCCCCCCCCCCCCCCCHH
Q ss_conf 997178877764453653026088
Q gi|254780939|r 187 FMMGDNRDKSKDSRWVEVGFVPEE 210 (248)
Q Consensus 187 fvlGDNRdnS~DSR~~~~G~Vp~~ 210 (248)
|||||||++|.|||+ ||+||++
T Consensus 48 FVLGDNR~~S~DSR~--~GpVp~S 69 (69)
T 1b12_A 48 FMMGDNRDNSADSRY--WGFVPEA 69 (69)
T ss_dssp EEECSBTTSCCCHHH--HCCEEGG
T ss_pred EEECCCCCCCCCCCC--CCCCCHH
T ss_conf 996278787640144--5778789
No 3
>>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A (A:71-189)
Probab=97.74 E-value=1.5e-05 Score=54.36 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=45.8
Q ss_pred EEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEEECHHHEEE
Q ss_conf 99878667764336988999840058766412211542222112555334704664014420031000000304234320
Q gi|254780939|r 38 SVIPSGSMIPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIGLPGDRISL 117 (248)
Q Consensus 38 f~Ips~SM~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIGlPGDtV~i 117 (248)
++|.+.||+|++..||.++|++- .+++-|++|+-. .+..++||+.-.||+++.+
T Consensus 38 l~v~GdSM~p~i~~Gd~viVd~~----------------------~~~~~g~~vi~~----~~~~~ikr~~~~~~~~i~l 91 (119)
T 2fjr_A 38 FTKPLTDGMAIRSEGKIYFVDKQ----------------------ASLSDGLWLVDI----KGAISIRELTKLPGRKLHV 91 (119)
T ss_dssp CSSCCSSEEEEEETTEEEEEETT----------------------CCSCSEEEEEEE----TTEEEEEEEEEETTTEEEE
T ss_pred EECCCCCCCCEECCCCEEEECCC----------------------CCCCCCEEEEEC----CCEEEEEEEEECCCCEEEE
T ss_conf 77268887427479999999399----------------------722585799981----6817999999848986999
Q ss_pred C
Q ss_conf 0
Q gi|254780939|r 118 E 118 (248)
Q Consensus 118 ~ 118 (248)
.
T Consensus 92 ~ 92 (119)
T 2fjr_A 92 A 92 (119)
T ss_dssp E
T ss_pred E
T ss_conf 6
No 4
>>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} (A:)
Probab=97.67 E-value=6e-05 Score=50.56 Aligned_cols=47 Identities=21% Similarity=0.184 Sum_probs=38.4
Q ss_pred EEEECCCC-CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEE
Q ss_conf 89987866-7764336988999840058766412211542222112555334704664014420031000000
Q gi|254780939|r 37 PSVIPSGS-MIPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVI 108 (248)
Q Consensus 37 ~f~Ips~S-M~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvI 108 (248)
..+|.++| |+|++..||.|+|++- .+++.|||+||.. ++..+|||+.
T Consensus 29 ~i~v~GdSmm~p~i~~Gd~vivd~~----------------------~~~~~g~i~v~~~---~~~~~vKr~~ 76 (116)
T 1umu_A 29 FVKASGDSXIDGGISDGDLLIVDSA----------------------ITASHGDIVIAAV---DGEFTVKKLQ 76 (116)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEETT----------------------SCCCTTCEEEEEE---TTEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCEEEEECC----------------------CCCCCCCEEEEEE---ECEEEEEEEE
T ss_conf 9999288877883748999999704----------------------3312476899998---1445689999
No 5
>>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} (A:)
Probab=96.76 E-value=0.0037 Score=39.28 Aligned_cols=49 Identities=22% Similarity=0.208 Sum_probs=37.1
Q ss_pred EEEECCCCC------CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEE
Q ss_conf 899878667------7643369889998400587664122115422221125553347046640144200310000003
Q gi|254780939|r 37 PSVIPSGSM------IPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIG 109 (248)
Q Consensus 37 ~f~Ips~SM------~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIG 109 (248)
.++|.++|| ||++..||.++|++- ..++.||+|+.... ....++||+.-
T Consensus 15 ~~~v~GdSM~~~~~~eP~i~~Gd~iiVd~~----------------------~~~~~g~~v~v~~~--~~~~~vKrl~~ 69 (109)
T 1kca_A 15 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE----------------------QAVEPGDFCIARLG--GDEFTFKKLIR 69 (109)
T ss_dssp EEECCSSTTCCCTTCSSCCCTTCEEEEETT----------------------SCCCTTCEEEEECS--TTCEEEEEEEE
T ss_pred EEEEECCCCCCCCCCCCCCCCCCEEEEECC----------------------CCCCCCCEEEEEEC--CCCEEEEEEEE
T ss_conf 999977777888777886398999999876----------------------86578999999996--86169999999
No 6
>>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A (A:)
Probab=96.71 E-value=0.0039 Score=39.18 Aligned_cols=53 Identities=19% Similarity=0.158 Sum_probs=39.0
Q ss_pred EEEECCCCC------CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEEE
Q ss_conf 899878667------76433698899984005876641221154222211255533470466401442003100000030
Q gi|254780939|r 37 PSVIPSGSM------IPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIGL 110 (248)
Q Consensus 37 ~f~Ips~SM------~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIGl 110 (248)
..+|.++|| +|++..||.|+|+.- .+++.||+|+... +.+..++||+.=-
T Consensus 46 al~v~GdSM~~~~~~eP~i~~Gd~ivv~~~----------------------~~~~~g~~vvv~~--~~~~~~iKr~~~~ 101 (133)
T 2hnf_A 46 WLEVEGNSMTTPTGSKTSFPDGMLILVDPE----------------------QAVEPGDFCIARL--GGDEFTFAKLIRD 101 (133)
T ss_dssp EEECCSSTTCCC---CCCCCTTCEEEEETT----------------------SCCCTTSEEEEEE--TTTEEEEEEEEEE
T ss_pred EEEECCCCCCCCCCCCCEECCCCEEEEECC----------------------CCCCCCCEEEEEE--ECCCEEEEEEEEE
T ss_conf 999838703577566870168819999787----------------------7567577799999--6382899999997
Q ss_pred CHH
Q ss_conf 423
Q gi|254780939|r 111 PGD 113 (248)
Q Consensus 111 PGD 113 (248)
+|.
T Consensus 102 ~~~ 104 (133)
T 2hnf_A 102 SGQ 104 (133)
T ss_dssp TTE
T ss_pred CCE
T ss_conf 998
No 7
>>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda} (A:100-236)
Probab=96.63 E-value=0.0038 Score=39.19 Aligned_cols=50 Identities=22% Similarity=0.218 Sum_probs=37.4
Q ss_pred EEEEECCCCC------CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEE
Q ss_conf 9899878667------7643369889998400587664122115422221125553347046640144200310000003
Q gi|254780939|r 36 QPSVIPSGSM------IPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIG 109 (248)
Q Consensus 36 ~~f~Ips~SM------~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIG 109 (248)
..++|.++|| ||++..||.|+|+. ..++..||+++.... .+..++||+.-
T Consensus 42 ~a~~v~GdSM~~~~~~eP~i~~Gd~vivd~----------------------~~~~~~g~~~vv~~~--~~~~~iKr~~~ 97 (137)
T 3bdn_A 42 FWLEVEGNSMTAPTGSKPSFPDGMLILVDP----------------------EQAVEPGDFCIARLG--GDEFTFKKLIR 97 (137)
T ss_dssp EEEECCSSSSCCCSSCSSCCCSSCEEEECC----------------------SSCCCTTSEEEEEST--TTCCCCEEEEC
T ss_pred EEEEECCCCCCCCCCCCCCCCCCEEEEECC----------------------CCCCCCCEEEEEEEE--CCCEEEEEEEE
T ss_conf 899981562256767898556763688515----------------------677763509999990--79379999999
No 8
>>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} (A:73-202)
Probab=96.52 E-value=0.0046 Score=38.68 Aligned_cols=53 Identities=28% Similarity=0.258 Sum_probs=38.3
Q ss_pred EEEECCCCCCCCCCC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEEECHHH
Q ss_conf 899878667764336-988999840058766412211542222112555334704664014420031000000304234
Q gi|254780939|r 37 PSVIPSGSMIPTLLV-GDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIGLPGDR 114 (248)
Q Consensus 37 ~f~Ips~SM~PTL~~-GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIGlPGDt 114 (248)
.++|.++||+|++.. ||.+++.+ ...++-|||+|+.. ++..+|||+.=-+|..
T Consensus 40 ~~~v~GdSM~p~~~~~g~i~i~~~----------------------~~~~~~g~i~v~~~---~~~~~iKr~~~~~~~~ 93 (130)
T 1jhf_A 40 LLRVSGMSMKDIGIMDGDLLAVHK----------------------TQDVRNGQVVVARI---DDEVTVKRLKKQGNKV 93 (130)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEEE----------------------CSCCCTTSEEEEEE---TTEEEEEEEEEETTEE
T ss_pred EEEECCCCCCCCCCCCCEEEEEEC----------------------CCCCCCCCEEEEEE---CCEEEEEEEEEECCEE
T ss_conf 999858865664368985999985----------------------63001896899998---9988999999979999
No 9
>>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A (A:17-205)
Probab=68.03 E-value=5.3 Score=19.42 Aligned_cols=40 Identities=10% Similarity=0.239 Sum_probs=27.7
Q ss_pred CCCCCCCCEEEEECCCCCHHHEEEEEEEECHHHEEECCCC
Q ss_conf 5553347046640144200310000003042343200773
Q gi|254780939|r 82 NNQPRRGDVVVFRYPKDPSIDYVKRVIGLPGDRISLEKGI 121 (248)
Q Consensus 82 ~~~p~RGDIVVF~~P~d~~~~yVKRvIGlPGDtV~i~~~~ 121 (248)
...|+.||||+|..-.+....=|-=|.++-|++|.+.+..
T Consensus 93 ~~~p~~GdIv~~~~~~~g~~GHVaIV~~V~~~~i~v~E~N 132 (189)
T 2vob_A 93 TTKPEADALLVYPSTDANPVGHVGTITEVGDDYVCVADQN 132 (189)
T ss_dssp SSCCCSSEEEEECCCSSCTTCEEEEEEEECSSEEEEECSS
T ss_pred CCCCCCCEEEEECCCCCCCCCEEEEEEEECCCEEEEEEEC
T ss_conf 8999887089967999898766999999828848998305
No 10
>>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter- like protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} (A:)
Probab=66.27 E-value=4.1 Score=20.15 Aligned_cols=20 Identities=55% Similarity=0.679 Sum_probs=15.3
Q ss_pred CCCCCCEEEEECCCCCHHHEEEEE
Q ss_conf 533470466401442003100000
Q gi|254780939|r 84 QPRRGDVVVFRYPKDPSIDYVKRV 107 (248)
Q Consensus 84 ~p~RGDIVVF~~P~d~~~~yVKRv 107 (248)
+|+|||.||+. .+.+.|+|-
T Consensus 63 kPrr~D~Vv~~----G~~~~Vtr~ 82 (102)
T 2pp6_A 63 IPRRGDRVVLR----GSEFTVTRI 82 (102)
T ss_dssp CCCTTCEEEET----TEEEEEEEE
T ss_pred CCCCCCEEEEC----CCEEEEEEE
T ss_conf 46889977864----878999989
No 11
>>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} (A:1-279)
Probab=57.10 E-value=4.6 Score=19.80 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=8.3
Q ss_pred CHHHEEECCCCEEECCCCC
Q ss_conf 4234320077324535312
Q gi|254780939|r 111 PGDRISLEKGIIYINGAPV 129 (248)
Q Consensus 111 PGDtV~i~~~~l~INg~~i 129 (248)
.|-+|+++++++++|||++
T Consensus 4 ~~R~v~~~~~~f~lNGkp~ 22 (279)
T 3d3a_A 4 SEGTFEVGKNTFLLNGEPF 22 (279)
T ss_dssp CCCCEEECSSSEEETTEEE
T ss_pred CCCEEEEECCEEEECCEEE
T ss_conf 7756999599899999799
No 12
>>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} (A:1-201)
Probab=56.59 E-value=12 Score=17.28 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=25.8
Q ss_pred CCCCCCCEEEEECCC-CCHHHEEEEEEEECHHHEEECCCC
Q ss_conf 553347046640144-200310000003042343200773
Q gi|254780939|r 83 NQPRRGDVVVFRYPK-DPSIDYVKRVIGLPGDRISLEKGI 121 (248)
Q Consensus 83 ~~p~RGDIVVF~~P~-d~~~~yVKRvIGlPGDtV~i~~~~ 121 (248)
..|+.||||||..-. +...-=|-=|.++-+++|.+.+..
T Consensus 110 ~~P~~Gdivv~~~~~~~~~~GHVaiV~~V~~~~i~v~EqN 149 (201)
T 2io8_A 110 RAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQN 149 (201)
T ss_dssp SCCCTTCEEEECSBTTBTTTCEEEEEEEECSSEEEEECSS
T ss_pred CCCCCCCEEEECCCCCCCCCCEEEEEEEECCCEEEEEECC
T ss_conf 9998886899679988897654999999828879998335
No 13
>>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} (A:286-482)
Probab=48.09 E-value=16 Score=16.48 Aligned_cols=60 Identities=27% Similarity=0.474 Sum_probs=38.8
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEEECHHHEEECCCCEEECCCC
Q ss_conf 3698899984005876641221154222211255533470466401442003100000030423432007732453531
Q gi|254780939|r 50 LVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIGLPGDRISLEKGIIYINGAP 128 (248)
Q Consensus 50 ~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIGlPGDtV~i~~~~l~INg~~ 128 (248)
..||++++-++- +|.+. -|| --.|.|+-|.++++.. +|+.+.-.| .|.++.+..+|.|-+
T Consensus 80 eegDriLI~rLD-------LPPTT----LRI----cG~G~v~~f~~~kd~~---ikk~v~reG-~v~~~K~r~~ieGLA 139 (197)
T 1wb1_A 80 EVGDRVLITRLD-------LPPTT----LRI----XGHGLIEEFKPIKDLN---IKKEVLREG-KVKIDKGRTVIDGLA 139 (197)
T ss_dssp CSSCCCBEECTT-------SCTTS----CCC----CCBCCEEECCCGGGSC---CCCCCEEEE-EEECCSSCCEETTSC
T ss_pred CCCCEEEEEECC-------CCCCC----EEE----ECCEEEECCCCCCCCC---CCCEEEEEE-EEEECCCEEEEECCC
T ss_conf 589989999645-------56655----087----5468995687553213---330264247-898238779451556
No 14
>>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} (A:)
Probab=44.75 E-value=7.1 Score=18.62 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=6.4
Q ss_pred CCCCCEEEEECCCC
Q ss_conf 33698899984005
Q gi|254780939|r 49 LLVGDYIIVNKFSY 62 (248)
Q Consensus 49 L~~GD~i~VnK~~Y 62 (248)
+..||.|+|.-..|
T Consensus 46 I~~GD~V~Ve~~~y 59 (71)
T 1ah9_A 46 ILTGDKVTVELTPY 59 (71)
T ss_dssp CCTTCEECCEECSS
T ss_pred ECCCCEEEEEECCC
T ss_conf 64999999997766
No 15
>>2hbw_A NLP/P60 protein; YP_323898.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics; HET: UNL; 1.05A {Anabaena variabilis atcc 29413} PDB: 2evr_A 2fg0_A (A:86-235)
Probab=44.30 E-value=9.2 Score=17.91 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 87664122115422221125553347046640144
Q gi|254780939|r 63 GYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPK 97 (248)
Q Consensus 63 G~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~ 97 (248)
|...+............+...++|.||+|.|....
T Consensus 54 G~~~p~~~~~~~~~g~~v~~~~~~pGDlif~~~~~ 88 (150)
T 2hbw_A 54 GIWLPRDAYQQEAFTQAITIDELAPGDLVFFGTPV 88 (150)
T ss_dssp TCCCCSSHHHHHHHSEEECGGGCCTTCEEEEECSS
T ss_pred CCCCCCCHHHHHHCCCCCCHHHCCCCCEEEECCCC
T ss_conf 99887689999742667886782578888857998
No 16
>>3h41_A NLP/P60 family protein; NP_979181.1, NLPC/P60 family protein, structural genomics, joint center for structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987} (A:185-311)
Probab=40.46 E-value=14 Score=16.82 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 8766412211542222112555334704664014
Q gi|254780939|r 63 GYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYP 96 (248)
Q Consensus 63 G~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P 96 (248)
|...|+..........++...+++.||++.|...
T Consensus 44 G~~lp~~~~~q~~~~~~v~~~~~~pGDliff~~~ 77 (127)
T 3h41_A 44 GITIPRDSGPQSRNGVAVDKEHLQKGDLIFFAHD 77 (127)
T ss_dssp TCCCCSSHHHHTTSSEEECGGGCCTTCEEEEEHH
T ss_pred CCCCCCCHHHHHHCCCCCCHHCCCCCCEEEEECC
T ss_conf 9786505799962784412300899888998178
No 17
>>1n7z_A Baseplate structural protein GP8; bacteriophage T4, dimer, beta sandwich, viral protein; 2.00A {Enterobacteria phage T4} (A:101-204)
Probab=33.40 E-value=26 Score=15.07 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=17.2
Q ss_pred CCCCEEEEECCCCCHH-----HEEEEEEEECH
Q ss_conf 3470466401442003-----10000003042
Q gi|254780939|r 86 RRGDVVVFRYPKDPSI-----DYVKRVIGLPG 112 (248)
Q Consensus 86 ~RGDIVVF~~P~d~~~-----~yVKRvIGlPG 112 (248)
+-|||||-++-.-+.. ..|-||+-+|-
T Consensus 7 ~i~DIVv~NsapyNrt~~g~GwmvYRcvDvPe 38 (104)
T 1n7z_A 7 RINDIVVCNSAPYNATESGAGWLVYRCLDVPD 38 (104)
T ss_dssp CTTCEEEESSSTTTCSCTTCCEEEEEEEECCS
T ss_pred CCCCCCCCCCCEEEEEEECCCCEEEEEEECCC
T ss_conf 46765446641378998515618999997366
No 18
>>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, protein structure initiative; 1.90A {Bacteroides uniformis atcc 8492} (A:84-171)
Probab=28.28 E-value=33 Score=14.46 Aligned_cols=24 Identities=38% Similarity=0.546 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 866776433698899984005876
Q gi|254780939|r 42 SGSMIPTLLVGDYIIVNKFSYGYS 65 (248)
Q Consensus 42 s~SM~PTL~~GD~i~VnK~~YG~~ 65 (248)
|||-|--.+-|.++++|-++|..|
T Consensus 47 sgsteqmvqygkyv~~ncwsyqnr 70 (88)
T 3dsm_A 47 SGSTEQXVQYGKYVYVNCWSYQNR 70 (88)
T ss_dssp TCBCCCEEEETTEEEEEECTTCCE
T ss_pred CCCCEEEEECCCCCEEEECCCCEE
T ss_conf 656304877399246741134317
No 19
>>2kie_A Inositol polyphosphate 5-phosphatase OCRL-1; INPP5B, clathrin, endocytosis, alternative splicing, cataract, disease mutation, hydrolase; NMR {Homo sapiens} (A:)
Probab=24.79 E-value=42 Score=13.78 Aligned_cols=18 Identities=44% Similarity=0.632 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCCCEEEEE
Q ss_conf 786677643369889998
Q gi|254780939|r 41 PSGSMIPTLLVGDYIIVN 58 (248)
Q Consensus 41 ps~SM~PTL~~GD~i~Vn 58 (248)
|.+||+|.|-+|-.-+..
T Consensus 2 ~~~~mep~~~~~~qp~a~ 19 (124)
T 2kie_A 2 PLGSMEPPLPVGAQPLAT 19 (124)
T ss_dssp CSCSSCCSSCSSCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCC
T ss_conf 976658888888775210
No 20
>>3kdr_A HK97 family phage portal protein; PSI, MCSG, structural genomics, protein structure initiative; 2.90A {Corynebacterium diphtheriae} (A:1-129,A:237-310)
Probab=23.97 E-value=43 Score=13.68 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=23.5
Q ss_pred EEEEECHHHEEECCCCEEECCCCCCCCCC
Q ss_conf 00030423432007732453531224544
Q gi|254780939|r 106 RVIGLPGDRISLEKGIIYINGAPVVRHME 134 (248)
Q Consensus 106 RvIGlPGDtV~i~~~~l~INg~~i~~~~~ 134 (248)
-.|.+|=|+-+++.+.+.+|||.++....
T Consensus 91 gaihipldtwqieentvrvngkavdp~ev 119 (203)
T 3kdr_A 91 GAIHIPLDTWQIEENTVRVNGKAVDPXEV 119 (203)
T ss_dssp EEEECCGGGEEESSSCEEESSSEECGGGE
T ss_pred EEEEECCCEEEEECCEEEEEEEEECHHHE
T ss_conf 89997696799766768982057065786
No 21
>>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=23.81 E-value=44 Score=13.66 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=6.8
Q ss_pred CCCCCEEEEEC
Q ss_conf 33470466401
Q gi|254780939|r 85 PRRGDVVVFRY 95 (248)
Q Consensus 85 p~RGDIVVF~~ 95 (248)
++|||+|+..+
T Consensus 54 Ik~GD~VlV~~ 64 (111)
T 2dgy_A 54 IKRGDFLIVDP 64 (111)
T ss_dssp CCSSCEEEEEE
T ss_pred EECCCEEEEEE
T ss_conf 94599999987
No 22
>2k3a_A Cysteine, Histidine-Dependent Amidohydrolases PEPTIDASE {Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305} (A:)
Probab=23.48 E-value=39 Score=13.95 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=18.4
Q ss_pred CCCCCCCCEEEEECCCCCHHHEEEEEEEECHH-HEEE
Q ss_conf 55533470466401442003100000030423-4320
Q gi|254780939|r 82 NNQPRRGDVVVFRYPKDPSIDYVKRVIGLPGD-RISL 117 (248)
Q Consensus 82 ~~~p~RGDIVVF~~P~d~~~~yVKRvIGlPGD-tV~i 117 (248)
...||.|||++|..=...- |-=|..+-+| +|.+
T Consensus 91 ~~~P~~G~I~~~~~g~yGH---VaiV~~V~~dgti~v 124 (155)
T 2k3a_A 91 NNSPEAGSILQSTAGGYGH---VAYVENVNSDGSVEV 124 (155)
T ss_dssp ESCCCSSEEEECCTTSSCC---EEEEEEECTTCCEEE
T ss_pred CCCCCCCEEEEECCCCCCE---EEEEEEECCCCEEEE
T ss_conf 7774567688969999530---789998718988999
No 23
>>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding motif; 1.60A {Synechocystis SP} (B:)
Probab=23.13 E-value=45 Score=13.58 Aligned_cols=29 Identities=21% Similarity=0.491 Sum_probs=19.3
Q ss_pred CCEEEEECCCCCHHHEEEEEEEECHHHEEEC
Q ss_conf 7046640144200310000003042343200
Q gi|254780939|r 88 GDVVVFRYPKDPSIDYVKRVIGLPGDRISLE 118 (248)
Q Consensus 88 GDIVVF~~P~d~~~~yVKRvIGlPGDtV~i~ 118 (248)
.-++||++|+.....+ -+-|+.|+..++-
T Consensus 11 ~sv~VyhhP~hr~~~~--Dl~G~EGev~~~v 39 (75)
T 1dj7_B 11 SSVVVYHHPEHKKTAF--DLQGMEGEVAAVL 39 (75)
T ss_dssp SCCEESCCTTSTTSCE--ECTTCEEEEEEEC
T ss_pred EEEEEEECCCCCCCCC--CCCCCEEEEEEEE
T ss_conf 0189984877679884--5678777786787
No 24
>>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (Q:)
Probab=22.99 E-value=45 Score=13.56 Aligned_cols=75 Identities=16% Similarity=0.025 Sum_probs=38.1
Q ss_pred EECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC--CCCCHHH-EEEEEEEECHHHE
Q ss_conf 987866776433698899984005876641221154222211255533470466401--4420031-0000003042343
Q gi|254780939|r 39 VIPSGSMIPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRY--PKDPSID-YVKRVIGLPGDRI 115 (248)
Q Consensus 39 ~Ips~SM~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~--P~d~~~~-yVKRvIGlPGDtV 115 (248)
.|-|..|.-|.. +-|.+..|-.+....--.......--.....+-||+|.+.. |...... .|.+++.-.|+..
T Consensus 9 ~Vvs~km~KTv~----V~v~r~~~~~ky~k~~~~~kky~aHD~~~~~~~GD~V~I~e~rPlSk~k~~~v~~i~~~~~~~~ 84 (105)
T 2vqe_Q 9 VVVSDKMQKTVT----VLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGRMDL 84 (105)
T ss_dssp EEEEEEETTEEE----EEEEEEEECTTTCCEEEEEEEEEEECTTCCCCTTCEEEEEEEEEEETTEEEEEEEEEECCCHHH
T ss_pred EEEECCCCCCEE----EEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCCCCC
T ss_conf 999567997489----9999999648767899860799999989889999999999877788917799999985167674
Q ss_pred EE
Q ss_conf 20
Q gi|254780939|r 116 SL 117 (248)
Q Consensus 116 ~i 117 (248)
.-
T Consensus 85 ~~ 86 (105)
T 2vqe_Q 85 VE 86 (105)
T ss_dssp HH
T ss_pred CH
T ss_conf 22
No 25
>>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A {Cellulomonas SP} (A:)
Probab=21.56 E-value=42 Score=13.74 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCCEEEEECCCCC
Q ss_conf 8667764336988999840058
Q gi|254780939|r 42 SGSMIPTLLVGDYIIVNKFSYG 63 (248)
Q Consensus 42 s~SM~PTL~~GD~i~VnK~~YG 63 (248)
.||+.|.+..||.++.+...+.
T Consensus 120 aG~l~~~~~~Gdivi~~~~i~~ 141 (266)
T 1qe5_A 120 CGGLNQEWGAGTPVLLSDHINL 141 (266)
T ss_dssp EEECCTTSCTTCEEEEEEEEEC
T ss_pred CCCCCCCCCCCCEECCCCHHCC
T ss_conf 3135444689966124130056
No 26
>2k1g_A Solution Nmr Structure Of Lipoprotein Spr {Escherichia Coli K12.} (A:)
Probab=20.93 E-value=50 Score=13.30 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCCCCEEEEECCC
Q ss_conf 2221125553347046640144
Q gi|254780939|r 76 FNGRIFNNQPRRGDVVVFRYPK 97 (248)
Q Consensus 76 ~~~~i~~~~p~RGDIVVF~~P~ 97 (248)
....+...+++.||+|.|....
T Consensus 59 ~g~~v~~~~~~pGDlif~~~~~ 80 (135)
T 2k1g_A 59 MGKSVSRSNLRTGDLVLFRAGS 80 (135)
T ss_dssp GSEEECGGGCCTTEEEEEEETT
T ss_pred CCCCCCCCCCCCCCEEEECCCC
T ss_conf 6912233578876188867999
No 27
>>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural genomics, NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus VF5} (A:1-58)
Probab=20.27 E-value=52 Score=13.21 Aligned_cols=34 Identities=21% Similarity=0.600 Sum_probs=22.6
Q ss_pred CCCCCEEEEECCCCCHHHEEEEEEEECHHHEEECCCCEE
Q ss_conf 334704664014420031000000304234320077324
Q gi|254780939|r 85 PRRGDVVVFRYPKDPSIDYVKRVIGLPGDRISLEKGIIY 123 (248)
Q Consensus 85 p~RGDIVVF~~P~d~~~~yVKRvIGlPGDtV~i~~~~l~ 123 (248)
-+-||.|+.++ ....|+||+ .||.++.+++..|.
T Consensus 4 FkEgd~VlIr~---~dkkylkkl--~k~~~LnVk~~~L~ 37 (58)
T 2yvl_A 4 FKEGEYVLIRF---GEKKFLRKL--LPKQSLSVKKSVLK 37 (58)
T ss_dssp CCTTCEEEEEE---TTEEEEEEC--CTTCEEEETTEEEE
T ss_pred CCCCCEEEEEE---CCCCEEEEE--CCCCEEEECCEEEE
T ss_conf 88999999990---897378997--48986987882887
Done!