HHsearch results for GI: 254780939 and protein with PDBid: 1kca_A
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=96.95 E-value=0.0017 Score=40.51 Aligned_cols=48 Identities=23% Similarity=0.283 Sum_probs=36.8
Q ss_pred EEECCCCC------CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEE
Q ss_conf 99878667------7643369889998400587664122115422221125553347046640144200310000003
Q gi|254780939|r 38 SVIPSGSM------IPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIG 109 (248)
Q Consensus 38 f~Ips~SM------~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIG 109 (248)
.+|.++|| +|++..||.|+|++ ..+|+-||+|+..-.. ....+||+.-
T Consensus 16 l~V~GdSM~~~~g~ep~i~~GdiviVd~----------------------~~~~~~G~ivva~~~~--~~~~~Krl~~ 69 (109)
T 1kca_A 16 LEVEGNSMTAPTGSKPSFPDGMLILVDP----------------------EQAVEPGDFCIARLGG--DEFTFKKLIR 69 (109)
T ss_dssp EECCSSTTCCCTTCSSCCCTTCEEEEET----------------------TSCCCTTCEEEEECST--TCEEEEEEEE
T ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEEC----------------------CCCCCCCCEEEEEECC--CEEEEEEEEE
T ss_conf 9997866788866789639999999982----------------------5866789999999969--9999999999