HHSEARCH alignment of GI: 254780939 and SCOP domain: d1b12a_

Alignment
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=386.62  Aligned_cols=203  Identities=40%  Similarity=0.754  Sum_probs=150.3

Q ss_pred             HHEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEEE
Q ss_conf             75168989987866776433698899984005876641221154222211255533470466401442003100000030
Q gi|254780939|r   31 RTFLFQPSVIPSGSMIPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIGL  110 (248)
Q Consensus        31 r~fv~~~f~Ips~SM~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIGl  110 (248)
                      |+|++|+|+|||+||||||+.||+|||||++||+|.|....      ..+..+.|+|||||||++|.+++..|||||+|+
T Consensus         1 R~f~~~~f~IPs~SMePTL~~GD~l~V~K~~Yg~r~P~~~~------~~~~~~~~~rgdivvf~~p~~~~~~~ikR~ig~   74 (247)
T d1b12a_           1 RSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQK------TLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGL   74 (247)
T ss_dssp             CBCCEEEEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSC------EEEEECCCCTTCEEEEECTTCTTSEEEEEEEEC
T ss_pred             CEEEEEEEEECCCCCCCHHCCCCEEEEECCCCCCCCCCCCC------CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf             97999989938602601121698899992656766776585------002246864472555368888875431024478


Q ss_pred             CHHHEEECCCCEEECCCCCCCCCCCCCE---EECC-------------------------------CCCCEEEEEECCCC
Q ss_conf             4234320077324535312245446400---2214-------------------------------78620122102214
Q gi|254780939|r  111 PGDRISLEKGIIYINGAPVVRHMEGYFS---YHYK-------------------------------EDWSSNVPIFQEKL  156 (248)
Q Consensus       111 PGDtV~i~~~~l~INg~~i~~~~~~~~~---~~~~-------------------------------~~~~~~~~~~~e~l  156 (248)
                      |||+|++.+...++|.++..........   ....                               .........+.|++
T Consensus        75 pGD~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (247)
T d1b12a_          75 PGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETL  154 (247)
T ss_dssp             TTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEEEE
T ss_pred             CCCEEEEECCCCEEEECCCCCCCCEEECCEEECCCCCCCCCCEEEEEECCCCEECCCEEECCCCCCCCCCEEEEEEEECC
T ss_conf             88768973265147751355555044232551124347430000231016862035325414654355755830123305


Q ss_pred             CCCCCCCEEE---------CCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCHHHEEEEEEEEEEECCCCC
Q ss_conf             6785000221---------2455788745302324464999717887776445365302608882533899997437887
Q gi|254780939|r  157 SNGVLYNVLS---------QDFLAPSSNISEFLVPKGHYFMMGDNRDKSKDSRWVEVGFVPEENLVGRASFVLFSIGGDT  227 (248)
Q Consensus       157 ~~~~~~~~~~---------~~~~~~~~~~~~~~VP~g~yfvlGDNRdnS~DSR~~~~G~Vp~~~IvGka~~i~~S~d~~~  227 (248)
                      ++ ..+.++.         .......++.++++||+||||||||||+||+||||  ||+||+++|+|||++||||+++..
T Consensus       155 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vp~~~yfvmGDNR~nS~DSR~--wG~Vp~~~I~Gka~~i~~p~~~~~  231 (247)
T d1b12a_         155 GD-VTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRY--WGFVPEANLVGRATAIWMSFDKQE  231 (247)
T ss_dssp             TT-EEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHH--HCCEEGGGEEEEEEEEEEEBC---
T ss_pred             CC-CCEEEEECCCCHHCCCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCC--CCCCCHHHEEEEEEEEEEECCCCC
T ss_conf             88-302677524530001200047865252089717749995478777751254--576778995899999998788876


Q ss_pred             CCCCCCCCCCCCCHHHCCCC
Q ss_conf             75435554567013342232
Q gi|254780939|r  228 PFSKVWLWIPNMRWDRLFKI  247 (248)
Q Consensus       228 ~~~~~~~~~~~iRw~R~f~~  247 (248)
                      .     .|++++||+||++.
T Consensus       232 ~-----~~~~~~r~~Rig~~  246 (247)
T d1b12a_         232 G-----EWPTGLRLSRIGGI  246 (247)
T ss_dssp             ----------CBCGGGCBCC
T ss_pred             C-----CCCCCCCCCCCCCC
T ss_conf             7-----57677641236047


SCOP domain information

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: Type 1 signal peptidase
domain: Type 1 signal peptidase
species: Escherichia coli [TaxId: 562]