RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780939|ref|YP_003065352.1| type I signal peptidase
[Candidatus Liberibacter asiaticus str. psy62]
         (248 letters)



>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli
           [TaxId: 562]}
          Length = 247

 Score =  152 bits (383), Expect = 4e-38
 Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 55/259 (21%)

Query: 31  RTFLFQPSVIPSGSMIPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDV 90
           R+F+++P  IPSGSM+PTLL+GD+I+V KF+YG     +  +       I    P+RGD+
Sbjct: 1   RSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKT------LIETGHPKRGDI 54

Query: 91  VVFRYPKDPSIDYVKRVIGLPGDRISLEKGIIYINGAPVVRH------------------ 132
           VVF+YP+DP +DY+KR +GLPGD+++ +     +   P                      
Sbjct: 55  VVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPS 114

Query: 133 --------------MEGYFSYHYKEDWSSNVPIFQEKLSNG-----VLYNVLSQDFLA-- 171
                           G+F     E   + + + + K + G     +L   ++QD +   
Sbjct: 115 DFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMY 174

Query: 172 ---PSSNISEFLVPKGHYFMMGDNRDKSKDSRWVEVGFVPEENLVGRASFVLFSIGGDTP 228
              P   ++ ++VP G YFMMGDNRD S DSR+   GFVPE NLVGRA+ +  S      
Sbjct: 175 YQQPGQQLATWIVPPGQYFMMGDNRDNSADSRY--WGFVPEANLVGRATAIWMSFDKQE- 231

Query: 229 FSKVWLWIPNMRWDRLFKI 247
                 W   +R  R+  I
Sbjct: 232 ----GEWPTGLRLSRIGGI 246


>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains
           {Megasphaera elsdenii [TaxId: 907]}
          Length = 232

 Score = 26.9 bits (58), Expect = 1.7
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 171 APSSNISEFLVPKGHY-FMMGDNRDK--SKDSRWVEVGF----VPEENLVG 214
             +  I+ F++  G   F  G   DK     S+ +E+ F    VP EN++G
Sbjct: 180 KGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLG 230


>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 231

 Score = 26.4 bits (57), Expect = 2.1
 Identities = 14/58 (24%), Positives = 18/58 (31%), Gaps = 7/58 (12%)

Query: 164 VLSQDFLAPSSNISEFLVPKGHY-FMMGDNRDKS--KDSRWVEVGF----VPEENLVG 214
           V+ +        IS  +V KG      G    K          V F    VP  N +G
Sbjct: 172 VMCRTGGPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIG 229


>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 231

 Score = 26.1 bits (56), Expect = 3.3
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 168 DFLAPSSNISEFLVPKGHY-FMMGDNRDKS--KDSRWVEVGF----VPEENLVG 214
           D    +  IS FLVP       +G   DK   + S    + F    +P+ENL+G
Sbjct: 175 DRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLG 228


>d1fmja_ c.37.1.5 (A:) Retinol dehydratase {Fall armyworm
          (Spodoptera frugiperda) [TaxId: 7108]}
          Length = 342

 Score = 25.0 bits (53), Expect = 5.6
 Identities = 10/37 (27%), Positives = 12/37 (32%)

Query: 61 SYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPK 97
            G   Y     Y      I+N   R  DV V  Y +
Sbjct: 30 KLGPKGYMVYRPYLKDAANIYNMPLRPTDVFVASYQR 66


>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 193

 Score = 24.8 bits (54), Expect = 6.4
 Identities = 4/27 (14%), Positives = 12/27 (44%)

Query: 163 NVLSQDFLAPSSNISEFLVPKGHYFMM 189
            +  ++FL    +I  F+  +   + +
Sbjct: 167 GLSWKEFLPEGQDIGAFVAEQKVEYTL 193


>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 236

 Score = 25.0 bits (53), Expect = 7.1
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 9/93 (9%)

Query: 132 HMEGYFSYHYKEDWSSNVPIFQEKLSNGVLYNVLSQDFLAPSSNISEFLVPKGH-YFMMG 190
                      + ++ N       ++N  + ++           I  FL+ KG       
Sbjct: 145 METRAHYNSSNKSYTLNGTKTW--ITNSPMADLFVVWARCEDGCIRGFLLEKGMRGLSAP 202

Query: 191 DNRDK--SKDSRWVEVGF----VPEENLVGRAS 217
             + K   + S    +      VPEEN++  AS
Sbjct: 203 RIQGKFSLRASATGMIIMDGVEVPEENVLPGAS 235


>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 236

 Score = 24.7 bits (53), Expect = 7.3
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 7/47 (14%)

Query: 175 NISEFLVPKGHY-FMMGDNRDK--SKDSRWVEVGF----VPEENLVG 214
            I+ F+V KG   F      DK   + S   E+ F    +P  N++G
Sbjct: 187 GITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILG 233


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.143    0.454 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,027,079
Number of extensions: 49682
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 20
Length of query: 248
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,268,006
Effective search space: 209220990
Effective search space used: 209220990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.0 bits)