BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780939|ref|YP_003065352.1| type I signal peptidase
[Candidatus Liberibacter asiaticus str. psy62]
         (248 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780939|ref|YP_003065352.1| type I signal peptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 248

 Score =  503 bits (1294), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/248 (100%), Positives = 248/248 (100%)

Query: 1   MWIAKKWTCSIFGSDTLKSILQALFFAILIRTFLFQPSVIPSGSMIPTLLVGDYIIVNKF 60
           MWIAKKWTCSIFGSDTLKSILQALFFAILIRTFLFQPSVIPSGSMIPTLLVGDYIIVNKF
Sbjct: 1   MWIAKKWTCSIFGSDTLKSILQALFFAILIRTFLFQPSVIPSGSMIPTLLVGDYIIVNKF 60

Query: 61  SYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIGLPGDRISLEKG 120
           SYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIGLPGDRISLEKG
Sbjct: 61  SYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIGLPGDRISLEKG 120

Query: 121 IIYINGAPVVRHMEGYFSYHYKEDWSSNVPIFQEKLSNGVLYNVLSQDFLAPSSNISEFL 180
           IIYINGAPVVRHMEGYFSYHYKEDWSSNVPIFQEKLSNGVLYNVLSQDFLAPSSNISEFL
Sbjct: 121 IIYINGAPVVRHMEGYFSYHYKEDWSSNVPIFQEKLSNGVLYNVLSQDFLAPSSNISEFL 180

Query: 181 VPKGHYFMMGDNRDKSKDSRWVEVGFVPEENLVGRASFVLFSIGGDTPFSKVWLWIPNMR 240
           VPKGHYFMMGDNRDKSKDSRWVEVGFVPEENLVGRASFVLFSIGGDTPFSKVWLWIPNMR
Sbjct: 181 VPKGHYFMMGDNRDKSKDSRWVEVGFVPEENLVGRASFVLFSIGGDTPFSKVWLWIPNMR 240

Query: 241 WDRLFKIL 248
           WDRLFKIL
Sbjct: 241 WDRLFKIL 248


>gi|254781178|ref|YP_003065591.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 304

 Score = 28.5 bits (62), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 215 RASFVLFSIGGDTPFSKVWLWIPNMRWD 242
           R+  VL +I G T F K + WI   RWD
Sbjct: 202 RSFEVLSNIAGITKFVKAYNWIAERRWD 229


>gi|254780689|ref|YP_003065102.1| flagellar motor switch protein G [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 345

 Score = 25.4 bits (54), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 85  PRRGDVVVFRYPKDPSIDYVKRVIGLP 111
           P  G  V+ R+P     D +KR + LP
Sbjct: 157 PSIGASVLLRFPNKIHADIMKRTVNLP 183


>gi|254781174|ref|YP_003065587.1| outer membrane assembly lipoprotein YfiO [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 271

 Score = 22.7 bits (47), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 7/23 (30%), Positives = 16/23 (69%)

Query: 88  GDVVVFRYPKDPSIDYVKRVIGL 110
           G+  + +YP+  ++DYV  ++G+
Sbjct: 117 GEEYITQYPESKNVDYVYYLVGM 139


>gi|254780263|ref|YP_003064676.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 392

 Score = 22.7 bits (47), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 110 LPGDRISLEKGIIY 123
           +PGDR+ LE  +IY
Sbjct: 350 MPGDRVDLEVELIY 363


>gi|254780150|ref|YP_003064563.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 392

 Score = 22.7 bits (47), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 110 LPGDRISLEKGIIY 123
           +PGDR+ LE  +IY
Sbjct: 350 MPGDRVDLEVELIY 363


>gi|254781208|ref|YP_003065621.1| hypothetical protein CLIBASIA_05575 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 578

 Score = 22.3 bits (46), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 186 YFMMGDNRDKSKDSRWVEVGFVPEENLVGRASFVLFS 222
           Y++ GD +D SKD R + V   P+   + +A   + S
Sbjct: 286 YYVWGDIKDVSKDGRSISV--APQSQTLFQAGVSVVS 320


>gi|255764510|ref|YP_003065448.2| uroporphyrinogen-III synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 232

 Score = 22.3 bits (46), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 97  KDPSIDYVKRVIGLPGDRISLEKGIIYINGAPVVRHMEGYFSYH 140
           KD SI+  K +I       + +K +IY+ G P   H E Y   H
Sbjct: 96  KDNSINLAK-IIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEH 138


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.143    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,274
Number of Sequences: 1233
Number of extensions: 8159
Number of successful extensions: 29
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 8
length of query: 248
length of database: 328,796
effective HSP length: 72
effective length of query: 176
effective length of database: 240,020
effective search space: 42243520
effective search space used: 42243520
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 37 (18.9 bits)