HHsearch alignment for GI: 254780940 and conserved domain: COG0571
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription].
Probab=100.00 E-value=0 Score=434.00 Aligned_cols=226 Identities=41% Similarity=0.592 Sum_probs=215.2
Q ss_pred CCCCHHHHHHHHCCCCCCHHHHHHHCCCHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 73588999998369658989999842461212667--6654778874586886454787764104688789988888887
Q gi|254780940|r 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 (227)
Q Consensus 2 ~~~~~~~l~~~lgy~f~~~~ll~~A~th~S~~~~~--~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV 79 (227)
T Consensus 4 ~~~~~~~l~~~lg~~f~~~~lL~~AltH~S~~~e~~~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV 83 (235)
T COG0571 4 MIKKLEALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALV 83 (235)
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 16899999998298978989999986474122346677523888751899999999999999789998778999999997
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCC--CCH
Q ss_conf 443345454313877200103663123753133333266999999996415542200122102564311100013--452
Q gi|254780940|r 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDA 157 (227)
Q Consensus 80 ~n~~La~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~~~~~~~~--~dp 157 (227)
T Consensus 84 ~~~~La~ia~~l~l~~~l~lg~ge~~~gg~~~~silaD~~EAligAiylD~g~~~~~~~i~~l~~~~~~~~~~~~~~~D~ 163 (235)
T COG0571 84 SEESLAEIARELGLGDYLRLGKGEEKSGGRRRESILADAFEALIGAIYLDSGLEAARKFILKLFLPRLEEIDAGDQFKDP 163 (235)
T ss_pred HHHHHHHHHHHHCCCCHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 78999999998097423230577655289886239999999999999981780999999999999998631434312584
Q ss_pred HHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 5889875320223333431010207788845999999999899999968989999999999999748899
Q gi|254780940|r 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 (227)
Q Consensus 158 K~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi~t 227 (227)
T Consensus 164 Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~~ 233 (235)
T COG0571 164 KTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVKE 233 (235)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 4899999996489997479840568877866899999899457773466889999999999999860304