HHsearch alignment for GI: 254780940 and conserved domain: COG0571

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription].
Probab=100.00  E-value=0  Score=434.00  Aligned_cols=226  Identities=41%  Similarity=0.592  Sum_probs=215.2

Q ss_pred             CCCCHHHHHHHHCCCCCCHHHHHHHCCCHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             73588999998369658989999842461212667--6654778874586886454787764104688789988888887
Q gi|254780940|r    2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV   79 (227)
Q Consensus         2 ~~~~~~~l~~~lgy~f~~~~ll~~A~th~S~~~~~--~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV   79 (227)
T Consensus         4 ~~~~~~~l~~~lg~~f~~~~lL~~AltH~S~~~e~~~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV   83 (235)
T COG0571           4 MIKKLEALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALV   83 (235)
T ss_pred             CHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             16899999998298978989999986474122346677523888751899999999999999789998778999999997


Q ss_pred             HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCC--CCH
Q ss_conf             443345454313877200103663123753133333266999999996415542200122102564311100013--452
Q gi|254780940|r   80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDA  157 (227)
Q Consensus        80 ~n~~La~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~~~~~~~~--~dp  157 (227)
T Consensus        84 ~~~~La~ia~~l~l~~~l~lg~ge~~~gg~~~~silaD~~EAligAiylD~g~~~~~~~i~~l~~~~~~~~~~~~~~~D~  163 (235)
T COG0571          84 SEESLAEIARELGLGDYLRLGKGEEKSGGRRRESILADAFEALIGAIYLDSGLEAARKFILKLFLPRLEEIDAGDQFKDP  163 (235)
T ss_pred             HHHHHHHHHHHHCCCCHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf             78999999998097423230577655289886239999999999999981780999999999999998631434312584


Q ss_pred             HHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             5889875320223333431010207788845999999999899999968989999999999999748899
Q gi|254780940|r  158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT  227 (227)
Q Consensus       158 K~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi~t  227 (227)
T Consensus       164 Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~~  233 (235)
T COG0571         164 KTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVKE  233 (235)
T ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             4899999996489997479840568877866899999899457773466889999999999999860304