HHsearch alignment for GI: 254780940 and conserved domain: COG1939

Probab=97.77  E-value=4.8e-05  Score=51.01  Aligned_cols=98  Identities=22%  Similarity=0.294  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE--------EECCCCCCCCCCCC
Q ss_conf             4778874586886454787764104688789988888887443345454313877200--------10366312375313
Q gi|254780940|r   40 YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI--------RVSSDLRKDVCSFM  111 (227)
Q Consensus        40 ~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~La~~a~~lgl~~~l--------~~~~~~~~~~~~~~  111 (227)
T Consensus        15 ~laLAy~GDAV~e~yVR~~~l~~g~~-k~~~lH~~a~~~VsAk~QA~il~~~--~~~Lte~E~~I~KRgRNak---s~T~   88 (132)
T COG1939          15 GLALAYLGDAVYELYVREYLLLKGKT-KPNDLHKRATAYVSAKAQALILKAL--LEFLTEEEEEIVKRGRNAK---SGTK   88 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCC---CCCC
T ss_conf             89999953599999999999722457-8689999999994588899999999--9986189999999701543---6789


Q ss_pred             CC-------CCHHHHHHHHHHHHHCCCCCCCHHHHHCCC
Q ss_conf             33-------332669999999964155422001221025
Q gi|254780940|r  112 TS-------IQADVVESLIAALYLDGGIEVAGTFVDKYW  143 (227)
Q Consensus       112 ~~-------ilad~fEA~iGAiy~d~G~~~~~~~i~~~~  143 (227)
T Consensus        89 ~kn~dv~tYr~sTgfEAliGyLyL~~~~eRL~ell~~~i  127 (132)
T COG1939          89 PKNTDVETYRMSTGFEALIGYLYLTKQEERLEELLNKVI  127 (132)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             887976788885019999999998455999999999998