HHsearch alignment for GI: 254780940 and conserved domain: cd00048
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.64 E-value=5.2e-16 Score=118.51 Aligned_cols=68 Identities=40% Similarity=0.581 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 52588987532022333343101020778884599999999989999996898999999999999974
Q gi|254780940|r 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 (227)
Q Consensus 156 dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227)
T Consensus 1 ~pks~LqE~~q~~~~~~p~Y~~~~~~g~~h~~~F~~~v~i~~~~~~~g~g~sKK~Aeq~AA~~aL~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred CCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 95789999999749999979616540898773499999999988615777769999999999999849