HHsearch alignment for GI: 254780940 and conserved domain: cd00593

>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=100.00  E-value=6.8e-35  Score=234.69  Aligned_cols=129  Identities=40%  Similarity=0.583  Sum_probs=118.4

Q ss_pred             HHHHHHCCCHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             9999842461212667-665477887458688645478776410468878998888888744334545431387720010
Q gi|254780940|r   21 SLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV   99 (227)
Q Consensus        21 ~ll~~A~th~S~~~~~-~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~La~~a~~lgl~~~l~~   99 (227)
T Consensus         1 ~ll~~Alth~S~~~~~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~~g~lt~~r~~lV~n~~L~~~a~~~gl~~~i~~   80 (133)
T cd00593           1 SLLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRL   80 (133)
T ss_pred             CHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             97889764616012688743499999889999999999999858578876208999999739999999998871999860


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCC
Q ss_conf             36631237531333332669999999964155422001221025643111
Q gi|254780940|r  100 SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK  149 (227)
Q Consensus       100 ~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~~~  149 (227)
T Consensus        81 ~~~~~~~~~~~~~k~~aD~~EAliGAiyld~g~~~~~~~i~~l~~~~~~~  130 (133)
T cd00593          81 GKGEEKSGGRLRPKILADVFEALIGAIYLDGGFEAARKFLLRLLGPLIEE  130 (133)
T ss_pred             CCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf             87576548730256898999999999999647999999999999999976