HHsearch alignment of GI: 254780940 and MMDB domain: 2a11_A_

>2a11_A (A:) Ribonuclease III, RNAse III; nuclease domain, structural genomics, PSI, protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=100.00  E-value=0  Score=322.93  Aligned_cols=221  Identities=30%  Similarity=0.325  Sum_probs=189.7

Q ss_pred             CCHHHHHHHHCCCCCCHHHHHHHCCCHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             58899999836965898999984246121266--7665477887458688645478776410468878998888888744
Q gi|254780940|r    4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA   81 (227)
Q Consensus         4 ~~~~~l~~~lgy~f~~~~ll~~A~th~S~~~~--~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n   81 (227)
                      -++..|+++|||+|+| +||.+||||+||...  ...||||||||||+||+++|+.+||.+||++++|.||.+|+.+|+|
T Consensus         5 ~~~~~~~~~l~~~f~~-~ll~~alth~S~~~~~~~~~~~erLe~lGd~vl~~~i~~~l~~~~p~~~~~~l~~~r~~lv~n   83 (242)
T 2a11_A            5 RSRQPLLDALGVDLPD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNT   83 (242)
T ss_dssp             CCCHHHHHHHTSCCCH-HHHHHHTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSH
T ss_pred             HHHHHHHHHHCCCCCH-HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             5399999996898798-999971278474244788874288988889999999999988750357689999999998615


Q ss_pred             HHHHHHHHHCCCCCEEEECC---CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCC-CCCH
Q ss_conf             33454543138772001036---6312375313333326699999999641554220012210256431110001-3452
Q gi|254780940|r   82 ETCSQVARELDLASFIRVSS---DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDA  157 (227)
Q Consensus        82 ~~La~~a~~lgl~~~l~~~~---~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~~~~~~~-~~dp  157 (227)
                      ++|+.+|..+|+..++....   +........++++++|+|||++||+|+|.|++.+..|+...+.+........ ..++
T Consensus        84 ~~la~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~k~~ad~~ea~~ga~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (242)
T 2a11_A           84 QALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLD  163 (242)
T ss_dssp             HHHHHHHHHHSSSCSGGGCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTHHHHHHTTC------
T ss_pred             HHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
T ss_conf             78999999818554551666047300158754154999999999999861434432100001200011211111012478


Q ss_pred             HHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCC
Q ss_conf             58898753202233334310102077888459999999998999999689899999999999997488
Q gi|254780940|r  158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI  225 (227)
Q Consensus       158 K~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi  225 (227)
                      ...++++++......|.|..+.+.||+|.+.|.|+|+++|..+++|.|+|||+|++.||++||++|.-
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~i~g~~~~~g~g~skk~Ak~~AA~~AL~~l~~  231 (242)
T 2a11_A          164 WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEV  231 (242)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCEEEEEEEECCHHHHHHCCCHHHHHHHHH
T ss_conf             68899998763036898699998856999849999999996999998689999973801769999986