HHsearch alignment of GI: 254780940 and MMDB domain: 2a11_A_
>2a11_A (A:) Ribonuclease III, RNAse III; nuclease domain, structural genomics, PSI, protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=322.93 Aligned_cols=221 Identities=30% Similarity=0.325 Sum_probs=189.7
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHCCCHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 58899999836965898999984246121266--7665477887458688645478776410468878998888888744
Q gi|254780940|r 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 (227)
Q Consensus 4 ~~~~~l~~~lgy~f~~~~ll~~A~th~S~~~~--~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n 81 (227)
-++..|+++|||+|+| +||.+||||+||... ...||||||||||+||+++|+.+||.+||++++|.||.+|+.+|+|
T Consensus 5 ~~~~~~~~~l~~~f~~-~ll~~alth~S~~~~~~~~~~~erLe~lGd~vl~~~i~~~l~~~~p~~~~~~l~~~r~~lv~n 83 (242)
T 2a11_A 5 RSRQPLLDALGVDLPD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNT 83 (242)
T ss_dssp CCCHHHHHHHTSCCCH-HHHHHHTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHCCCCCH-HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 5399999996898798-999971278474244788874288988889999999999988750357689999999998615
Q ss_pred HHHHHHHHHCCCCCEEEECC---CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCC-CCCH
Q ss_conf 33454543138772001036---6312375313333326699999999641554220012210256431110001-3452
Q gi|254780940|r 82 ETCSQVARELDLASFIRVSS---DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDA 157 (227)
Q Consensus 82 ~~La~~a~~lgl~~~l~~~~---~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~~~~~~~-~~dp 157 (227)
++|+.+|..+|+..++.... +........++++++|+|||++||+|+|.|++.+..|+...+.+........ ..++
T Consensus 84 ~~la~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~k~~ad~~ea~~ga~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (242)
T 2a11_A 84 QALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLD 163 (242)
T ss_dssp HHHHHHHHHHSSSCSGGGCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTHHHHHHTTC------
T ss_pred HHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
T ss_conf 78999999818554551666047300158754154999999999999861434432100001200011211111012478
Q ss_pred HHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCC
Q ss_conf 58898753202233334310102077888459999999998999999689899999999999997488
Q gi|254780940|r 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 (227)
Q Consensus 158 K~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi 225 (227)
...++++++......|.|..+.+.||+|.+.|.|+|+++|..+++|.|+|||+|++.||++||++|.-
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~i~g~~~~~g~g~skk~Ak~~AA~~AL~~l~~ 231 (242)
T 2a11_A 164 WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEV 231 (242)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCEEEEEEEECCHHHHHHCCCHHHHHHHHH
T ss_conf 68899998763036898699998856999849999999996999998689999973801769999986