HHsearch results for GI: 254780940 and protein with PDBid: 1o0w_A

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=100.00  E-value=0  Score=409.13  Aligned_cols=221  Identities=32%  Similarity=0.421  Sum_probs=204.8

Q ss_pred             CCHHHHHHHHCCCCCCHHHHHHHCCCHHHCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             5889999983696589899998424612126-------676654778874586886454787764104688789988888
Q gi|254780940|r    4 LRYSTLEKRIGYAFANRSLLEKALTHSSISH-------SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN   76 (227)
Q Consensus         4 ~~~~~l~~~lgy~f~~~~ll~~A~th~S~~~-------~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~   76 (227)
                      ..+++||++|||+|+|++||.+||||+||..       ....||||||||||+||+++|++|||.+||+.+||.||.+|+
T Consensus        19 ~~i~~le~~igy~F~n~~lL~~AlTH~S~~~~~~~~~~~~~~~~eRLEfLGDavL~~~v~~~l~~~~p~~~eg~lt~~r~   98 (252)
T 1o0w_A           19 KIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKS   98 (252)
T ss_dssp             HHHHHHHHHHCCCCSSHHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             99999999969843999999998067063444434334677547899998999999999999998688887131299999


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCC--CCCC
Q ss_conf             88744334545431387720010366312375313333326699999999641554220012210256431110--0013
Q gi|254780940|r   77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFR  154 (227)
Q Consensus        77 ~lV~n~~La~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~~~~--~~~~  154 (227)
                      .+|||++|+.+|..+||++|++.+++...+....+++++||+|||+|||||+|+|++.|+.|+.+++.+.+...  ....
T Consensus        99 ~lv~~~~La~~a~~l~l~~~l~~~~~~~~~~~~~~~k~laD~fEAliGAiylD~g~~~~~~~v~~l~~~~l~~~~~~~~~  178 (252)
T 1o0w_A           99 AAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGEML  178 (252)
T ss_dssp             HHTSHHHHHHHHHHTTHHHHCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHCCHHHHHHHHHHCCHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             98187879999997377998762870433377643348878999999999981680465899999999999887644300


Q ss_pred             CCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf             4525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r  155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG  224 (227)
Q Consensus       155 ~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg  224 (227)
                      .|||+.||||||+.+...|+|+++..+||+|.+.|.|+|+++|+.+|+|.|+|||+||+.||++||++|.
T Consensus       179 ~dpk~~L~e~~q~~~~~~p~y~~~~~~g~~~~~~f~v~v~i~~~~~~~G~G~SKK~Ae~~AA~~AL~~L~  248 (252)
T 1o0w_A          179 FDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLL  248 (252)
T ss_dssp             SCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             6755501787776405788558875116999951899999999999998848999999999999999998