HHsearch results for GI: 254780940 and protein with PDBid: 1whn_A
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.66 E-value=2.1e-16 Score=119.53 Aligned_cols=85 Identities=25% Similarity=0.200 Sum_probs=69.9
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEE-CCHHHHHHHHHH
Q ss_conf 2102564311100013452588987532022333343101020778884599999999989999996-898999999999
Q gi|254780940|r 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAA 217 (227)
Q Consensus 139 i~~~~~~~~~~~~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g-~SkK~Ae~~AA~ 217 (227)
|...+....-.......|||+.||||||+++..+|.|+++.+ .|++.|+|.|.|+|..+++|.| +|||+|||.||+
T Consensus 10 vi~~~~~~~r~~~~~~~~PKs~LqE~~Qk~~~~~P~Y~~~~~---~~~~~F~~~V~i~g~~~~~~~g~~SKK~AEq~AA~ 86 (128)
T 1whn_A 10 IIKMAIRFDRRAYPPQITPKMCLLEWCRREKLPQPVYETVQR---TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAI 86 (128)
T ss_dssp SEEECCCCCGGGSCTTCCHHHHHHHHHHHTTCCCCCCCEEEC---SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHH
T ss_pred EEEEEHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEECC---CCCCCEEEEEEECCEEEECCCCCCCHHHHHHHHHH
T ss_conf 688543221331888898179999999974999988997315---68887589999999983047775538899999999
Q ss_pred HHHHHCCCC
Q ss_conf 999974889
Q gi|254780940|r 218 EVLKREGIW 226 (227)
Q Consensus 218 ~AL~klgi~ 226 (227)
.||+.||+-
T Consensus 87 ~AL~~Lg~~ 95 (128)
T 1whn_A 87 VCLRSQGLP 95 (128)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHCCCC
T ss_conf 999981998