HHsearch results for GI: 254780940 and protein with PDBid: 2nug_A
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=100.00 E-value=0 Score=382.44 Aligned_cols=211 Identities=38% Similarity=0.567 Sum_probs=193.7
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 88999998369658989999842461212667665477887458688645478776410468878998888888744334
Q gi|254780940|r 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 (227)
Q Consensus 5 ~~~~l~~~lgy~f~~~~ll~~A~th~S~~~~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~L 84 (227)
.++.||++|||+|+|++||.+||||+|+... .||||||||||+||+++|+++||.+||+.+||.||.+|+.+|||++|
T Consensus 3 ~l~~le~~lgy~f~~~~ll~~Alth~S~~~~--~~~erLEflGDavL~~~v~~~l~~~~p~~~eg~lt~~r~~lv~~~~l 80 (221)
T 2nug_A 3 MLEQLEKKLGYTFKDKSLLEKALTHVSYSKK--EHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFF 80 (221)
T ss_dssp CHHHHHHHHTCCCSSHHHHHHHHBCTTTCSS--SCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 6999999989883888999999667577888--87368885489999999999999758899964105989998776089
Q ss_pred HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC--CHHHHHCCCCCCCCC---CCCCCCCHHH
Q ss_conf 54543138772001036631237531333332669999999964155422--001221025643111---0001345258
Q gi|254780940|r 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV--AGTFVDKYWKQRALK---SGKFRRDAKT 159 (227)
Q Consensus 85 a~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~--~~~~i~~~~~~~~~~---~~~~~~dpK~ 159 (227)
+.+|..+||++|++.+++. .+++++||+|||+|||||+|+|++. ++.|+.++|.+.+.. ......|||+
T Consensus 81 a~~a~~~gl~~~~~~~~~~------~~~~~laD~fEA~iGAiylD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~ 154 (221)
T 2nug_A 81 NLLAQKLELHKFIRIKRGK------INETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKT 154 (221)
T ss_dssp HHHHHTTTGGGTCBSCTTC------CCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHH
T ss_pred HHHHHHCCCCCCCCCCCCC------CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 9998842886324112463------2104787799999999976358531465999999999999987652110133689
Q ss_pred HHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 89875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 160 ~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
+||||||+.+...|.|+++..+||+|.+.|.|+|++++.. +.|.|+|||+||+.||++||++|.
T Consensus 155 ~L~e~~q~~~~~~p~y~~~~~~g~~~~~~f~v~v~~~~~~-~~G~G~sKK~Ae~~AA~~aL~~L~ 218 (221)
T 2nug_A 155 ILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIKLLE 218 (221)
T ss_dssp HHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCCCHHCCCCCCCCCCCEEEEEEEECCEE-EEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 9999999738988521003345899995199999989989-999878999999999999999872