HHsearch results for GI: 254780940 and protein with PDBid: 3o2r_A
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=100.00 E-value=1.3e-40 Score=268.63 Aligned_cols=141 Identities=34% Similarity=0.521 Sum_probs=132.5
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 88999998369658989999842461212667665477887458688645478776410468878998888888744334
Q gi|254780940|r 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 (227)
Q Consensus 5 ~~~~l~~~lgy~f~~~~ll~~A~th~S~~~~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~L 84 (227)
++++||++|||+|+|++||.+||||+||... .+|||||||||+||+++++.+||.+||+.+||.+|.+|+.+|||++|
T Consensus 27 ~i~~le~~l~Y~F~n~~LL~~AlTh~S~~~~--~~nerLefLGD~vL~~~vs~~l~~~~p~~~~g~l~~~r~~lv~n~~L 104 (170)
T 3o2r_A 27 NIEKLEQSLTYEFKDKNLLIHALTHKSFKKS--YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSF 104 (170)
T ss_dssp CHHHHHHHHTCCCSSHHHHHHHTBCTTSSTT--CCSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 3999999979851888999999727687998--87389999899999999999999848887702489999998608789
Q ss_pred HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCC
Q ss_conf 545431387720010366312375313333326699999999641554220012210256431
Q gi|254780940|r 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147 (227)
Q Consensus 85 a~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~ 147 (227)
+.+|.++||+++++++++......+.+++++||+|||+|||||+|+|++.|++|+.++|.+..
T Consensus 105 a~ia~~lgL~~~~~~~~~~~~~~~~~~~k~laD~~EAliGAIylD~G~~~a~~~i~~l~~~~l 167 (170)
T 3o2r_A 105 AKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNF 167 (170)
T ss_dssp HHHHHHTTGGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 989998698267642732764388755308989999999999995788999999999999852