HHSEARCH alignment of GI: 254780940 and SCOP domain: d1o0wa2

Alignment

Probab=99.73  E-value=6.5e-18  Score=127.41  Aligned_cols=68  Identities=34%  Similarity=0.397  Sum_probs=66.3

Q ss_pred             CHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             52588987532022333343101020778884599999999989999996898999999999999974
Q gi|254780940|r  156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE  223 (227)
Q Consensus       156 dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~kl  223 (227)
                      |||+.||||||+++..+|.|+++..+||+|++.|+|.|+++|..+++|.|+|||+||+.||+.||++|
T Consensus         1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~~~g~g~sKK~Aeq~AA~~aL~~L   68 (69)
T d1o0wa2           1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL   68 (69)
T ss_dssp             CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             91789999999749999979999966888884299999989999999872899999999999999986

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]