HHSEARCH alignment of GI: 254780940 and SCOP domain: d1x49a1

Alignment

Probab=99.62  E-value=2.2e-16  Score=118.02  Aligned_cols=71  Identities=25%  Similarity=0.184  Sum_probs=66.0

Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf             134525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r  153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG  224 (227)
Q Consensus       153 ~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg  224 (227)
                      ...|||++||||||+++. .|.|.++..+||+|++.|+|.|+|+|..+++|.|+|||+||+.||+.||+.|.
T Consensus         5 ~~~~yk~~L~E~~Qk~~~-~~~y~~~~~~Gp~h~~~F~~~v~v~g~~~~~g~g~sKK~Aeq~AA~~aL~~L~   75 (85)
T d1x49a1           5 TPGFYMDKLNKYRQMHGV-AITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILD   75 (85)
T ss_dssp             CTTHHHHHHHHHHHHHTC-CEEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHCCC-CCEEEEEEECCCCCCCEEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             813399999999986699-97589987218988745899884184675055665599999999999999998

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]