HHSEARCH alignment of GI: 254780940 and SCOP domain: d2b7va1

Alignment

Probab=99.45  E-value=7.3e-14  Score=102.46  Aligned_cols=65  Identities=23%  Similarity=0.258  Sum_probs=59.7

Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             13452588987532022333343101020778884599999999989999996898999999999999974
Q gi|254780940|r  153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE  223 (227)
Q Consensus       153 ~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~kl  223 (227)
                      ..+||++.|||+|+.     ++|++++++||+|++.|+|.|.|+|... +|.|+|||+||++||+.||++|
T Consensus         2 ~~Knpv~~L~E~~~~-----~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Ak~~AA~~aL~~L   66 (71)
T d2b7va1           2 SGKNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATV   66 (71)
T ss_dssp             CSSCHHHHHHHHCCS-----CEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHCCC-----CEEEEEEEECCCCCCEEEEEEEECCEEE-EECCCCHHHHHHHHHHHHHHHH
T ss_conf             887989999997659-----8689925168998973999999999999-8168988999999999999998

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]