HHSEARCH alignment of GI: 254780940 and SCOP domain: d2cpna1

Alignment

Probab=99.68  E-value=7e-17  Score=121.04  Aligned_cols=72  Identities=33%  Similarity=0.374  Sum_probs=67.2

Q ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             0013452588987532022333343101020778884599999999989999996898999999999999974
Q gi|254780940|r  151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE  223 (227)
Q Consensus       151 ~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~kl  223 (227)
                      .....|||+.||||||+++...|+|.++.++|++|.+.|.|.|.+++.. ++|.|+|||+||+.||+.||++|
T Consensus         5 ~~~~~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~G~SKK~Aeq~AA~~aL~~L   76 (76)
T d2cpna1           5 QQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFI-EIGSGTSKKLAKRNAAAKMLLRV   76 (76)
T ss_dssp             CCCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEECCEE-ECCCCCCHHHHHHHHHHHHHHHC
T ss_conf             6678897899999999749999979986643267775279999954224-11364529999999999999869

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]