HHSEARCH alignment of GI: 254780940 and SCOP domain: d2nuga1

Alignment
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00  E-value=6.5e-39  Score=256.63  Aligned_cols=137  Identities=40%  Similarity=0.604  Sum_probs=125.0

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             89999983696589899998424612126676654778874586886454787764104688789988888887443345
Q gi|254780940|r    6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS   85 (227)
Q Consensus         6 ~~~l~~~lgy~f~~~~ll~~A~th~S~~~~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~La   85 (227)
                      ++.||++|||+|+|++||.+||||+||...  .+|||||||||+||++++++|||.+||+.++|.||.+|+.+|||++|+
T Consensus         2 l~~le~~igy~F~n~~LL~~Alth~S~~~~--~~~erLeflGDavl~~~v~~~l~~~~p~~~~g~lt~~r~~lvsn~~La   79 (148)
T d2nuga1           2 LEQLEKKLGYTFKDKSLLEKALTHVSYSKK--EHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFN   79 (148)
T ss_dssp             HHHHHHHHTCCCSSHHHHHHHHBCTTTCSS--SCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             889999989862888999998668576887--550999999988875455789985087751678877777764136766


Q ss_pred             HHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC--CCHHHHHCCCCCCCCCC
Q ss_conf             454313877200103663123753133333266999999996415542--20012210256431110
Q gi|254780940|r   86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQRALKS  150 (227)
Q Consensus        86 ~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~--~~~~~i~~~~~~~~~~~  150 (227)
                      .+|.++||++|++.+++.      .+++++||+|||+|||||+|+|++  .++.|+.++|.+.+...
T Consensus        80 ~~a~~lgl~~~i~~~~~~------~~~kilad~~EAiiGAiylD~g~~~~~~~~~i~~l~~~~i~~~  140 (148)
T d2nuga1          80 LLAQKLELHKFIRIKRGK------INETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSA  140 (148)
T ss_dssp             HHHHTTTGGGTCBSCTTC------CCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             578885088998752642------0103657899998877642268779999999999999999988


SCOP domain information

class: All alpha proteins
fold: RNase III domain-like
superfamily: RNase III domain-like
family: RNase III catalytic domain-like
domain: RNase III endonuclease catalytic domain
species: Aquifex aeolicus [TaxId: 63363]