HHSEARCH alignment of GI: 254780940 and SCOP domain: d2nuga2

Alignment

Probab=99.67  E-value=8.1e-17  Score=120.67  Aligned_cols=68  Identities=37%  Similarity=0.480  Sum_probs=64.8

Q ss_pred             CHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf             525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r  156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG  224 (227)
Q Consensus       156 dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg  224 (227)
                      |||+.||||||+++..+|.|+++..+||+|++.|+|.|.+++. .++|.|+|||.||+.||+.||+.|.
T Consensus         1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~-~~~g~g~sKK~Aeq~AA~~aL~~Lk   68 (68)
T d2nuga2           1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLE   68 (68)
T ss_dssp             CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEECCE-EEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf             9078999999975999998999984188878479999998877-9999509999999999999999739

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]