Query gi|254780940|ref|YP_003065353.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62] Match_columns 227 No_of_seqs 139 out of 3294 Neff 7.6 Searched_HMMs 13730 Date Wed Jun 1 10:59:40 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780940.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1o0wa1 a.149.1.1 (A:-1-167) R 100.0 2.9E-41 2.8E-45 271.1 6.7 147 4-150 9-162 (169) 2 d2nuga1 a.149.1.1 (A:3-150) RN 100.0 6.5E-39 4.7E-43 256.6 9.6 137 6-150 2-140 (148) 3 d1u61a_ a.149.1.1 (A:) Hypothe 99.9 2.1E-24 1.5E-28 167.4 3.5 107 37-144 5-123 (127) 4 d1o0wa2 d.50.1.1 (A:168-236) R 99.7 6.5E-18 4.7E-22 127.4 8.7 68 156-223 1-68 (69) 5 d2cpna1 d.50.1.1 (A:150-225) T 99.7 7E-17 5.1E-21 121.0 9.0 72 151-223 5-76 (76) 6 d1uhza_ d.50.1.1 (A:) staufen 99.7 7.7E-17 5.6E-21 120.8 9.2 71 154-225 5-75 (89) 7 d2nuga2 d.50.1.1 (A:151-218) R 99.7 8.1E-17 5.9E-21 120.7 8.0 68 156-224 1-68 (68) 8 d1uila_ d.50.1.1 (A:) ATP-depe 99.6 1.7E-16 1.3E-20 118.6 6.5 74 151-226 22-103 (113) 9 d1qu6a1 d.50.1.1 (A:1-90) dsRN 99.6 8.1E-17 5.9E-21 120.7 4.7 73 151-224 9-81 (90) 10 d1di2a_ d.50.1.1 (A:) Double-s 99.6 3.7E-16 2.7E-20 116.6 8.0 67 157-224 2-68 (69) 11 d1x49a1 d.50.1.1 (A:8-92) dsRN 99.6 2.2E-16 1.6E-20 118.0 5.7 71 153-224 5-75 (85) 12 d1whna_ d.50.1.1 (A:) tRNA-dih 99.6 5.9E-16 4.3E-20 115.4 7.9 83 141-226 12-95 (128) 13 d2dixa1 d.50.1.1 (A:7-79) Inte 99.6 4.4E-16 3.2E-20 116.2 7.1 68 155-224 2-69 (73) 14 d1x47a1 d.50.1.1 (A:8-92) Dgcr 99.6 1.2E-15 8.7E-20 113.5 8.9 71 151-223 5-75 (85) 15 d1whqa_ d.50.1.1 (A:) ATP-depe 99.6 8.3E-16 6.1E-20 114.4 6.1 68 154-223 5-73 (99) 16 d1qu6a2 d.50.1.1 (A:91-179) ds 99.6 1.9E-15 1.4E-19 112.2 6.6 75 148-224 7-81 (89) 17 d1t4oa_ d.50.1.1 (A:) RNase II 99.6 1.4E-15 1E-19 113.0 5.5 74 151-226 2-76 (81) 18 d1x48a1 d.50.1.1 (A:8-83) dsRN 99.5 7.7E-15 5.6E-19 108.5 8.1 66 157-224 1-66 (76) 19 d1ekza_ d.50.1.1 (A:) Staufen, 99.5 1.1E-15 8.1E-20 113.6 3.3 71 152-224 4-74 (76) 20 d2dmya1 d.50.1.1 (A:8-91) Sper 99.5 2E-13 1.5E-17 99.8 9.7 68 154-227 11-78 (84) 21 d2b7va1 d.50.1.1 (A:1-71) dsRN 99.5 7.3E-14 5.4E-18 102.5 7.2 65 153-223 2-66 (71) 22 d2b7ta1 d.50.1.1 (A:1-73) dsRN 99.3 2.1E-12 1.6E-16 93.4 7.2 67 155-224 4-70 (73) 23 d1ztda1 a.149.1.2 (A:2-125) Hy 70.4 3 0.00022 18.7 6.0 84 42-145 5-92 (124) 24 d1aisa1 d.129.1.1 (A:1-92) TAT 41.6 9.3 0.00068 15.7 4.8 39 186-225 52-92 (92) 25 d1kn0a_ d.50.1.3 (A:) The homo 33.8 12 0.0009 14.9 5.6 18 207-224 118-135 (184) 26 d1mp9a1 d.129.1.1 (A:5-96) TAT 32.7 13 0.00094 14.8 4.0 39 186-225 52-92 (92) 27 d2qale2 d.50.1.2 (E:9-77) Ribo 30.0 14 0.001 14.5 4.0 39 185-223 20-62 (69) 28 d1qnaa1 d.129.1.1 (A:17-115) T 24.4 18 0.0013 13.9 5.7 39 186-225 50-90 (99) 29 d2o3fa1 a.4.1.20 (A:1-83) Puta 22.0 7.3 0.00053 16.3 -0.4 41 55-97 23-66 (83) 30 d2uube2 d.50.1.2 (E:5-73) Ribo 20.6 21 0.0016 13.4 5.9 38 186-223 21-62 (69) No 1 >d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Probab=100.00 E-value=2.9e-41 Score=271.07 Aligned_cols=147 Identities=32% Similarity=0.450 Sum_probs=135.2 Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHCCCHHHCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 5889999983696589899998424612126-------676654778874586886454787764104688789988888 Q gi|254780940|r 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISH-------SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 (227) Q Consensus 4 ~~~~~l~~~lgy~f~~~~ll~~A~th~S~~~-------~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~ 76 (227) ..++.||++|||+|+|++||.+||||+||.. ...++||||||||||||+++++++||.+||+.+||.+|.+|+ T Consensus 9 ~~~~~~e~~lgy~F~n~~Ll~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~~~v~~~l~~~~~~~~~g~ls~~~~ 88 (169) T d1o0wa1 9 KIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKS 88 (169) T ss_dssp HHHHHHHHHHCCCCSSHHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 99999999989863988999987668153654433233565321889999877999998999998641002001278999 Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCC Q ss_conf 88744334545431387720010366312375313333326699999999641554220012210256431110 Q gi|254780940|r 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 (227) Q Consensus 77 ~lV~n~~La~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~~~~ 150 (227) .+|||++|+.+|..+||+++++++++........+++++||+|||+|||||+|+|++.|+.|+.++|.+.+... T Consensus 89 ~lv~~~~La~ia~~~~l~~~i~~~~~~~~~~~~~~~kvlad~~EAliGAiylD~G~~~~~~~i~~~~~~~l~~i 162 (169) T d1o0wa1 89 AAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKI 162 (169) T ss_dssp HHTSHHHHHHHHHHTTHHHHCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCHHHHHHCCCHHHHCCCCCCCCHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH T ss_conf 87418999999998181766424872654388665531220999999999993779999999999999999986 No 2 >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Probab=100.00 E-value=6.5e-39 Score=256.63 Aligned_cols=137 Identities=40% Similarity=0.604 Sum_probs=125.0 Q ss_pred HHHHHHHHCCCCCCHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 89999983696589899998424612126676654778874586886454787764104688789988888887443345 Q gi|254780940|r 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 (227) Q Consensus 6 ~~~l~~~lgy~f~~~~ll~~A~th~S~~~~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~La 85 (227) ++.||++|||+|+|++||.+||||+||... .+|||||||||+||++++++|||.+||+.++|.||.+|+.+|||++|+ T Consensus 2 l~~le~~igy~F~n~~LL~~Alth~S~~~~--~~~erLeflGDavl~~~v~~~l~~~~p~~~~g~lt~~r~~lvsn~~La 79 (148) T d2nuga1 2 LEQLEKKLGYTFKDKSLLEKALTHVSYSKK--EHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFN 79 (148) T ss_dssp HHHHHHHHTCCCSSHHHHHHHHBCTTTCSS--SCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 889999989862888999998668576887--550999999988875455789985087751678877777764136766 Q ss_pred HHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC--CCHHHHHCCCCCCCCCC Q ss_conf 454313877200103663123753133333266999999996415542--20012210256431110 Q gi|254780940|r 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQRALKS 150 (227) Q Consensus 86 ~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~--~~~~~i~~~~~~~~~~~ 150 (227) .+|.++||++|++.+++. .+++++||+|||+|||||+|+|++ .++.|+.++|.+.+... T Consensus 80 ~~a~~lgl~~~i~~~~~~------~~~kilad~~EAiiGAiylD~g~~~~~~~~~i~~l~~~~i~~~ 140 (148) T d2nuga1 80 LLAQKLELHKFIRIKRGK------INETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSA 140 (148) T ss_dssp HHHHTTTGGGTCBSCTTC------CCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 578885088998752642------0103657899998877642268779999999999999999988 No 3 >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Probab=99.89 E-value=2.1e-24 Score=167.39 Aligned_cols=107 Identities=21% Similarity=0.163 Sum_probs=88.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC--------CCCCCCC Q ss_conf 66547788745868864547877641046887899888888874433454543138772001036--------6312375 Q gi|254780940|r 37 QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS--------DLRKDVC 108 (227) Q Consensus 37 ~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~La~~a~~lgl~~~l~~~~--------~~~~~~~ 108 (227) .-|...|||||||||+++|++|||.+|| .+||+||++|+.+||+++|+.++..+++++|+..+. +...... T Consensus 5 ~~~~~~LefLGDAVl~l~v~~~L~~~~p-~~eg~Lt~~r~~lV~~~~la~~a~~l~l~~~l~~~e~~~~~~Grn~~~~~~ 83 (127) T d1u61a_ 5 QLNSLALAYMGDAVYEQYIRYHLLQKGK-VRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANSGTV 83 (127) T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHCC-SCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCCSSCC T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCC T ss_conf 4484778987899999999999997189-990179999999924999999999907677764033431016775547777 Q ss_pred C----CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCC Q ss_conf 3----13333326699999999641554220012210256 Q gi|254780940|r 109 S----FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 (227) Q Consensus 109 ~----~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~ 144 (227) + ...+++||+|||+|||+|+|+|++.++.|+.+.+. T Consensus 84 ~k~~~~~~y~lad~fEAliGalYLd~~~e~~~~~i~~~~~ 123 (127) T d1u61a_ 84 PKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAIA 123 (127) T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 7666514777605999999999991888999999999998 No 4 >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=99.73 E-value=6.5e-18 Score=127.41 Aligned_cols=68 Identities=34% Similarity=0.397 Sum_probs=66.3 Q ss_pred CHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHC Q ss_conf 52588987532022333343101020778884599999999989999996898999999999999974 Q gi|254780940|r 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 (227) Q Consensus 156 dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227) |||+.||||||+++..+|.|+++..+||+|++.|+|.|+++|..+++|.|+|||+||+.||+.||++| T Consensus 1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~~~g~g~sKK~Aeq~AA~~aL~~L 68 (69) T d1o0wa2 1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL 68 (69) T ss_dssp CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHH T ss_conf 91789999999749999979999966888884299999989999999872899999999999999986 No 5 >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Probab=99.68 E-value=7e-17 Score=121.04 Aligned_cols=72 Identities=33% Similarity=0.374 Sum_probs=67.2 Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHC Q ss_conf 0013452588987532022333343101020778884599999999989999996898999999999999974 Q gi|254780940|r 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 (227) Q Consensus 151 ~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227) .....|||+.||||||+++...|+|.++.++|++|.+.|.|.|.+++.. ++|.|+|||+||+.||+.||++| T Consensus 5 ~~~~~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~G~SKK~Aeq~AA~~aL~~L 76 (76) T d2cpna1 5 QQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFI-EIGSGTSKKLAKRNAAAKMLLRV 76 (76) T ss_dssp CCCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEECCEE-ECCCCCCHHHHHHHHHHHHHHHC T ss_conf 6678897899999999749999979986643267775279999954224-11364529999999999999869 No 6 >d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Probab=99.68 E-value=7.7e-17 Score=120.79 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=67.6 Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCC Q ss_conf 345258898753202233334310102077888459999999998999999689899999999999997488 Q gi|254780940|r 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 (227) Q Consensus 154 ~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi 225 (227) ..||+++||||||++...+|+|+++.++||+|++.|+|.|.+++.. .+|.|+|||+||+.||+.||++||. T Consensus 5 ~~~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~g~SKK~Ae~~AA~~aL~~l~~ 75 (89) T d1uhza_ 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEV-ATGTGPNKKIAKKNAAEAMLLQLGY 75 (89) T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHTS T ss_pred CCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEEEEEEE-CCCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 8881999999999649999979850244567750699999996564-0232037899999999999999676 No 7 >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Probab=99.67 E-value=8.1e-17 Score=120.67 Aligned_cols=68 Identities=37% Similarity=0.480 Sum_probs=64.8 Q ss_pred CHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC Q ss_conf 525889875320223333431010207788845999999999899999968989999999999999748 Q gi|254780940|r 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227) Q Consensus 156 dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227) |||+.||||||+++..+|.|+++..+||+|++.|+|.|.+++. .++|.|+|||.||+.||+.||+.|. T Consensus 1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~-~~~g~g~sKK~Aeq~AA~~aL~~Lk 68 (68) T d2nuga2 1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLE 68 (68) T ss_dssp CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC T ss_pred CCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEECCE-EEEEECCCHHHHHHHHHHHHHHHHC T ss_conf 9078999999975999998999984188878479999998877-9999509999999999999999739 No 8 >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Probab=99.63 E-value=1.7e-16 Score=118.60 Aligned_cols=74 Identities=24% Similarity=0.315 Sum_probs=64.0 Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEE-----CCEEEEEEEECCHHHHHHHHHHHHHHHC-- Q ss_conf 001345258898753202233334310102077888459999999-----9989999996898999999999999974-- Q gi|254780940|r 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKRE-- 223 (227) Q Consensus 151 ~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v-----~g~~~g~g~g~SkK~Ae~~AA~~AL~kl-- 223 (227) ++...|||++||||||+++. +|.|++ ...||+|++.|+|.|.| ++..+++|.|+|||+||+.||+.||++| T Consensus 22 ~wt~~n~Ks~LqE~~Qk~k~-~p~Y~i-~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G~G~sKK~AEq~AA~~~l~~L~~ 99 (113) T d1uila_ 22 NWTLENAKARLNQYFQKEKI-QGEYKY-TQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYH 99 (113) T ss_dssp CCCHHHHHHHHHHHHHHSCC-CCCCEE-EEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHCCC-CCCEEE-EEECCCCCCEEEEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH T ss_conf 97014799999999986799-996598-5542688995999999942125976776406260999999999999999997 Q ss_pred -CCC Q ss_conf -889 Q gi|254780940|r 224 -GIW 226 (227) Q Consensus 224 -gi~ 226 (227) |++ T Consensus 100 ~g~i 103 (113) T d1uila_ 100 LGVI 103 (113) T ss_dssp HTSS T ss_pred CCCC T ss_conf 4886 No 9 >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Probab=99.63 E-value=8.1e-17 Score=120.65 Aligned_cols=73 Identities=27% Similarity=0.245 Sum_probs=66.5 Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC Q ss_conf 00134525889875320223333431010207788845999999999899999968989999999999999748 Q gi|254780940|r 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227) Q Consensus 151 ~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227) +....|||+.||||||+++. .|.|.++..+||+|++.|+|.|.++|..+++|.|+|||+||+.||+.||+.|. T Consensus 9 ~~~~~~y~s~LqE~~Qk~~~-~p~y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Aeq~AA~~aL~~L~ 81 (90) T d1qu6a1 9 DLSAGFFMEELNTYRQKQGV-VLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILN 81 (90) T ss_dssp CSSSCSHHHHHHHHHHHHTC-CCEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCEEEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHH T ss_conf 99977899999999998299-98579987107988744799999775664056787699999999999999998 No 10 >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Probab=99.63 E-value=3.7e-16 Score=116.61 Aligned_cols=67 Identities=34% Similarity=0.439 Sum_probs=63.9 Q ss_pred HHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC Q ss_conf 25889875320223333431010207788845999999999899999968989999999999999748 Q gi|254780940|r 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227) Q Consensus 157 pK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227) |++.|||+||+++..+|.|+++.++||+|++.|.|.|.+++.. ++|.|+|||+||+.||+.||++|. T Consensus 2 Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~-~~g~g~sKK~Aeq~AA~~aL~~L~ 68 (69) T d1di2a_ 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFV-ETGSGTSKQVAKRVAAEKLLTKFK 68 (69) T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEE-EECCCCCHHHHHHHHHHHHHHHHC T ss_conf 8389999999759999838999843787774168999986678-763767299999999999999845 No 11 >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Probab=99.62 E-value=2.2e-16 Score=118.02 Aligned_cols=71 Identities=25% Similarity=0.184 Sum_probs=66.0 Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC Q ss_conf 134525889875320223333431010207788845999999999899999968989999999999999748 Q gi|254780940|r 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227) Q Consensus 153 ~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227) ...|||++||||||+++. .|.|.++..+||+|++.|+|.|+|+|..+++|.|+|||+||+.||+.||+.|. T Consensus 5 ~~~~yk~~L~E~~Qk~~~-~~~y~~~~~~Gp~h~~~F~~~v~v~g~~~~~g~g~sKK~Aeq~AA~~aL~~L~ 75 (85) T d1x49a1 5 TPGFYMDKLNKYRQMHGV-AITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILD 75 (85) T ss_dssp CTTHHHHHHHHHHHHHTC-CEEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHCCC-CCEEEEEEECCCCCCCEEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHH T ss_conf 813399999999986699-97589987218988745899884184675055665599999999999999998 No 12 >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Probab=99.62 E-value=5.9e-16 Score=115.35 Aligned_cols=83 Identities=25% Similarity=0.207 Sum_probs=68.4 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEE-CCHHHHHHHHHHHH Q ss_conf 02564311100013452588987532022333343101020778884599999999989999996-89899999999999 Q gi|254780940|r 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEV 219 (227) Q Consensus 141 ~~~~~~~~~~~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g-~SkK~Ae~~AA~~A 219 (227) .++............|||+.||||||+++..+|.|.++.+ .|++.|++.|.|+|..++.+.| +|||+||+.||+.| T Consensus 12 ~~~~~~~r~~~p~~~~pKs~LqE~~Qk~~~~~P~Y~~~~~---~~~~~F~~~V~v~g~~~~s~~g~~SKK~AEq~AA~~A 88 (128) T d1whna_ 12 KMAIRFDRRAYPPQITPKMCLLEWCRREKLPQPVYETVQR---TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVC 88 (128) T ss_dssp EECCCCCGGGSCTTCCHHHHHHHHHHHTTCCCCCCCEEEC---SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHH T ss_pred EEEHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEC---CCCCCCEEEEEECCEEEECCCCCCCHHHHHHHHHHHH T ss_conf 4237555301788998789999999863999976887622---5577777999988847651677453899999999999 Q ss_pred HHHCCCC Q ss_conf 9974889 Q gi|254780940|r 220 LKREGIW 226 (227) Q Consensus 220 L~klgi~ 226 (227) |++||+- T Consensus 89 L~~Lg~~ 95 (128) T d1whna_ 89 LRSQGLP 95 (128) T ss_dssp HHHHTCS T ss_pred HHHHCCC T ss_conf 9983898 No 13 >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Probab=99.61 E-value=4.4e-16 Score=116.16 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=63.7 Q ss_pred CCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC Q ss_conf 4525889875320223333431010207788845999999999899999968989999999999999748 Q gi|254780940|r 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227) Q Consensus 155 ~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227) +||++.||||||+++. .|.|+++.++||+|++.|+|.|.+++. .+.|.|+|||+||+.||+.||+.|. T Consensus 2 K~Pis~L~E~~qk~~~-~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~g~g~sKK~Aeq~AA~~al~~L~ 69 (73) T d2dixa1 2 KTPIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDI-TCTGEGTSKKLAKHRAAEAAINILK 69 (73) T ss_dssp CCHHHHHHHHHHHTTC-CCEEEEEEEECSSSSCEEEEEEEETTE-EEEECSSCTTHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHCCC-CCEEEEEEEECCCCCCEEEEEEEEEEE-EEEECCCCHHHHHHHHHHHHHHHHH T ss_conf 5877999999996798-988998653589887179999999889-9886146599999999999999987 No 14 >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Probab=99.61 E-value=1.2e-15 Score=113.46 Aligned_cols=71 Identities=24% Similarity=0.290 Sum_probs=64.1 Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHC Q ss_conf 0013452588987532022333343101020778884599999999989999996898999999999999974 Q gi|254780940|r 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 (227) Q Consensus 151 ~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227) .+..+|||+.||||||+.+..+|.|.++..+|++ +.|.|.|.++|..+++|.|+|||.||+.||+.||++| T Consensus 5 n~~~K~p~s~LqE~~Qk~~~~~p~Y~~~~~~g~~--~~F~~~v~i~g~~~~~g~G~sKK~Aeq~AA~~AL~~L 75 (85) T d1x47a1 5 NPNGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 75 (85) T ss_dssp CTTCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCEEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHH T ss_conf 8899598899999999829999973787547898--8889999999999744784129999999999999999 No 15 >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Probab=99.58 E-value=8.3e-16 Score=114.43 Aligned_cols=68 Identities=22% Similarity=0.381 Sum_probs=61.0 Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEE-EEEEEECCHHHHHHHHHHHHHHHC Q ss_conf 3452588987532022333343101020778884599999999989-999996898999999999999974 Q gi|254780940|r 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223 (227) Q Consensus 154 ~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~-~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227) ..|+|+.||||||++.. .|.|.+. ++||+|+++|+|.|.|+|.. +++|.|+|||+||+.||+.||+.| T Consensus 5 ~~~~Ks~LqE~~qk~k~-~P~Y~~~-~~G~~h~~~F~~~v~v~g~~~~~~g~g~sKK~AEq~AA~~al~~L 73 (99) T d1whqa_ 5 SSGIKNFLYAWCGKRKM-TPAYEIR-AVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYL 73 (99) T ss_dssp CCSSHHHHHHHHHHTTC-CCEEEEE-EEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHCCC-CCEEEEE-CCCCCCCCEEEEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHH T ss_conf 76688999999986899-9869984-024788860899998516543100577528899999999999999 No 16 >d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Probab=99.57 E-value=1.9e-15 Score=112.20 Aligned_cols=75 Identities=19% Similarity=0.088 Sum_probs=65.7 Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC Q ss_conf 11000134525889875320223333431010207788845999999999899999968989999999999999748 Q gi|254780940|r 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227) Q Consensus 148 ~~~~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227) ........|||++||||||+++. .|.|... ++||+|++.|.|.|.|+|..++.|.|+|||+||+.||+.||++|. T Consensus 7 ~~~~~~~~n~~s~L~E~~Qk~~~-~~~y~~~-~~g~~h~~~F~~~v~i~g~~~~~g~G~sKK~Akq~AA~~Al~~L~ 81 (89) T d1qu6a2 7 SSEGLSMGNYIGLINRIAQKKRL-TVNYEQC-ASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQIL 81 (89) T ss_dssp SSCCCCCCCCHHHHHHHHHHSCC-EEEEEEE-EECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHCCC-CCCEEEE-CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 77676532899999999996288-7642663-157878875699999897036665652699999999999999997 No 17 >d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=99.56 E-value=1.4e-15 Score=113.02 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=62.5 Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEE-CCEEEEEEEECCHHHHHHHHHHHHHHHCCCC Q ss_conf 001345258898753202233334310102077888459999999-9989999996898999999999999974889 Q gi|254780940|r 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 (227) Q Consensus 151 ~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v-~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi~ 226 (227) +.++.|+|++||+|||+.+. .|.|+++...||+|.+ |.|.|.+ ++..++.|.|+|||.||++||+.||+++++| T Consensus 2 ~~id~~~K~~L~e~~~~~g~-~P~Y~~~~~~~~~~~~-f~v~~~v~~~~~~~~g~g~SKK~AEq~AA~~aL~~~~~l 76 (81) T d1t4oa_ 2 DKLDMNAKRQLYSLIGYASL-RLHYVTVKKPTAVDPN-SIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKML 76 (81) T ss_dssp CCCCTTHHHHHHHHHCCGGG-CCEEEEEECCCSSCCC-EEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHH T ss_pred CCCCCCHHHHHHHHHHCCCC-CCEEEEECCCCCCCCC-EEEEEEEECCCEEEECCCCHHHHHHHHHHHHHHHHCCHH T ss_conf 85556899999999830899-8579970147878898-899999966825876453301089999999999832288 No 18 >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Probab=99.54 E-value=7.7e-15 Score=108.48 Aligned_cols=66 Identities=20% Similarity=0.204 Sum_probs=59.7 Q ss_pred HHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC Q ss_conf 25889875320223333431010207788845999999999899999968989999999999999748 Q gi|254780940|r 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227) Q Consensus 157 pK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227) |+++||||||++.. ++.|.+. ++||+|++.|+|.|.|+|..+++|.|+|||+||+.||+.||++|. T Consensus 1 Y~s~L~E~~Qk~~~-~~~~~~~-~~G~~h~~~F~~~v~v~~~~~~~g~G~sKK~Aeq~AA~~Al~~L~ 66 (76) T d1x48a1 1 YIGLVNSFAQKKKL-SVNYEQC-EPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLL 66 (76) T ss_dssp HHHHHHHHHHHTTC-CEEEEEC-CCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHCC-CCCCCCC-CCCCCCCCCEEEEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 94899999998689-9764447-769899975899999999995785762799999999999999997 No 19 >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=99.54 E-value=1.1e-15 Score=113.65 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=65.2 Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC Q ss_conf 0134525889875320223333431010207788845999999999899999968989999999999999748 Q gi|254780940|r 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227) Q Consensus 152 ~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227) ...+||++.||||||+++.. |.|.++..+||+|++.|+|.|.+++. .++|.|+|||+||+.||+.||++|. T Consensus 4 ~~~k~Pvs~L~E~~q~~~~~-~~y~~~~~~G~~h~~~F~~~v~v~~~-~~~g~G~SKK~Aeq~AA~~al~~L~ 74 (76) T d1ekza_ 4 GDKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSI-VTEGEGNGKKVSKKRAAEKMLVELQ 74 (76) T ss_dssp CCCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETTE-EEEECCCSTTSSSHHHHHHHHHHHT T ss_pred CCCCCHHHHHHHHHHHCCCC-CEEEEEEEECCCCCEEEEEEEEEEEE-EEEECCCCHHHHHHHHHHHHHHHHH T ss_conf 77889899999999967989-70899971379887089999998214-7660567699999999999999987 No 20 >d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Probab=99.46 E-value=2e-13 Score=99.79 Aligned_cols=68 Identities=31% Similarity=0.376 Sum_probs=60.3 Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCCCC Q ss_conf 34525889875320223333431010207788845999999999899999968989999999999999748899 Q gi|254780940|r 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 (227) Q Consensus 154 ~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi~t 227 (227) ..||+++|+|+. ..|+|+++.++||+|++.|+|.|.++|..+ .|.|+|||+||+.||+.||++|++-| T Consensus 11 ~~n~~~~L~e~~-----~~~~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~g~G~SKK~Aeq~AA~~aL~~L~~~~ 78 (84) T d2dmya1 11 LMNALMRLNQIR-----PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYPT 78 (84) T ss_dssp CTHHHHHHHHHS-----CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTCCC T ss_pred CCCHHHHHHHHC-----CCCEEEEEEEECCCCCCEEEEEEEECCEEE-ECCCCCHHHHHHHHHHHHHHHHCCCC T ss_conf 449999998707-----898699977068988975999999999999-85899989999999999999948899 No 21 >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=99.45 E-value=7.3e-14 Score=102.46 Aligned_cols=65 Identities=23% Similarity=0.258 Sum_probs=59.7 Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHC Q ss_conf 13452588987532022333343101020778884599999999989999996898999999999999974 Q gi|254780940|r 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 (227) Q Consensus 153 ~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227) ..+||++.|||+|+. ++|++++++||+|++.|+|.|.|+|... +|.|+|||+||++||+.||++| T Consensus 2 ~~Knpv~~L~E~~~~-----~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Ak~~AA~~aL~~L 66 (71) T d2b7va1 2 SGKNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATV 66 (71) T ss_dssp CSSCHHHHHHHHCCS-----CEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCC-----CEEEEEEEECCCCCCEEEEEEEECCEEE-EECCCCHHHHHHHHHHHHHHHH T ss_conf 887989999997659-----8689925168998973999999999999-8168988999999999999998 No 22 >d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=99.31 E-value=2.1e-12 Score=93.44 Aligned_cols=67 Identities=25% Similarity=0.312 Sum_probs=56.4 Q ss_pred CCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC Q ss_conf 4525889875320223333431010207788845999999999899999968989999999999999748 Q gi|254780940|r 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227) Q Consensus 155 ~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227) .+||+.|+++.+. ...|.|.+++++||+|++.|+|.|.++|..+ +|.|+|||+||++||+.||+.|. T Consensus 4 ~~pK~~l~~L~e~--~~~~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Aeq~AA~~aL~~l~ 70 (73) T d2b7ta1 4 VLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFV 70 (73) T ss_dssp SSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHC--CCCCEEEEEEEECCCCCCEEEEEEEECCEEE-ECCCCCHHHHHHHHHHHHHHHHH T ss_conf 8981999999851--8998799987128999964999999999999-91887499999999999999985 No 23 >d1ztda1 a.149.1.2 (A:2-125) Hypothetical protein PF0609 {Pyrococcus furiosus [TaxId: 2261]} Probab=70.42 E-value=3 Score=18.73 Aligned_cols=84 Identities=23% Similarity=0.209 Sum_probs=49.0 Q ss_pred HHHHHHHHHHHHHHHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHH Q ss_conf 7887458688645478776--41046887899888888874433454543138772001036631237531333332669 Q gi|254780940|r 42 RLEFLGDRILGLLISTLLF--NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 (227) Q Consensus 42 rLEflGDavL~~~v~~~l~--~~~p~~~eG~lt~lr~~lV~n~~La~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~f 119 (227) -|.-+||+.++|++|-.|- .-.|... -|-|.+|+---..-||...+. +....-.+|.. T Consensus 5 gLak~GDSLiNfl~SlALte~lG~PTg~----------rVPnasLAiAle~a~Ls~~l~----------r~dkh~kGd~a 64 (124) T d1ztda1 5 GLAKFGDSLINFLYSLALTEFLGKPTGD----------RVPNASLAIALELTGLSKNLR----------RVDKHAKGDYA 64 (124) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCC----------CCCHHHHHHHHHHHTGGGGCC----------GGGTTCHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCC----------CCCCHHHHHHHHHHHHHHCCC----------CCCCCCCCHHH T ss_conf 5888718999999999999993898878----------788749999999970764088----------75667861799 Q ss_pred HHHHHHHHHCCCCC--CCHHHHHCCCCC Q ss_conf 99999996415542--200122102564 Q gi|254780940|r 120 ESLIAALYLDGGIE--VAGTFVDKYWKQ 145 (227) Q Consensus 120 EA~iGAiy~d~G~~--~~~~~i~~~~~~ 145 (227) ||+++--|+.+-+. .+-.++..-+.+ T Consensus 65 EA~iAyAWLeg~it~eEavEilk~nl~~ 92 (124) T d1ztda1 65 EALIAKAWLMGLISEREAVEIIKKNLYP 92 (124) T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHTTCCG T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCH T ss_conf 9999999993424099999999970758 No 24 >d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Probab=41.64 E-value=9.3 Score=15.69 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=27.6 Q ss_pred CCEEEEEEEECCEEEEEEEECCHHHHHHHHHH--HHHHHCCC Q ss_conf 84599999999989999996898999999999--99997488 Q gi|254780940|r 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA--EVLKREGI 225 (227) Q Consensus 186 ~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~--~AL~klgi 225 (227) +|.-++.++..|+.+.+|. +|..+|++..++ ..|+++|| T Consensus 52 ~p~~~~lIF~sGkivitGa-kS~~~~~~a~~~i~~~l~~lGv 92 (92) T d1aisa1 52 DPKVALLIFSSGKLVVTGA-KSVQDIERAVAKLAQKLKSIGV 92 (92) T ss_dssp SSCCEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTC T ss_pred CCCEEEEEECCCEEEEECC-CCHHHHHHHHHHHHHHHHHCCC T ss_conf 9958999978988999826-9999999999999999998389 No 25 >d1kn0a_ d.50.1.3 (A:) The homologous-pairing domain of Rad52 recombinase {Human (Homo sapiens) [TaxId: 9606]} Probab=33.85 E-value=12 Score=14.93 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=13.2 Q ss_pred CHHHHHHHHHHHHHHHCC Q ss_conf 989999999999999748 Q gi|254780940|r 207 SKRAAEQVAAAEVLKREG 224 (227) Q Consensus 207 SkK~Ae~~AA~~AL~klg 224 (227) .+|+|...|=++|+.++| T Consensus 118 a~KeA~TDAlKRA~~~FG 135 (184) T d1kn0a_ 118 ARKEAVTDGLKRALRSFG 135 (184) T ss_dssp HHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 988888799999999977 No 26 >d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Probab=32.67 E-value=13 Score=14.81 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=26.4 Q ss_pred CCEEEEEEEECCEEEEEEEECCHHHHHHHHHH--HHHHHCCC Q ss_conf 84599999999989999996898999999999--99997488 Q gi|254780940|r 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA--EVLKREGI 225 (227) Q Consensus 186 ~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~--~AL~klgi 225 (227) +|.-++-++..|+.+.+|. +|..+++....+ ..|+++|| T Consensus 52 ~p~~t~lIF~SGkivitGa-ks~~~~~~a~~~~~~~L~~~G~ 92 (92) T d1mp9a1 52 SPKITSLIFKSGKMVVTGA-KSTDELIKAVKRIIKTLKKYGM 92 (92) T ss_dssp TTTEEEEECTTSEEEEECC-SSHHHHHHHHHHHHHHHHHTTC T ss_pred CCCEEEEEECCCEEEEECC-CCHHHHHHHHHHHHHHHHHCCC T ss_conf 9957999985887999825-9999999999999999998189 No 27 >d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=29.98 E-value=14 Score=14.53 Aligned_cols=39 Identities=18% Similarity=0.021 Sum_probs=28.5 Q ss_pred CCCEEEEEEEECCE----EEEEEEECCHHHHHHHHHHHHHHHC Q ss_conf 88459999999998----9999996898999999999999974 Q gi|254780940|r 185 HDPRFTVVVEISGL----APAQGMDCSKRAAEQVAAAEVLKRE 223 (227) Q Consensus 185 ~~~~f~v~v~v~g~----~~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227) ....|.+-|.+++. -+|.|.+..-..|-++|..+|-++| T Consensus 20 r~~~f~alVvvGn~~G~vG~G~gKa~ev~~Ai~KA~~~Ak~nl 62 (69) T d2qale2 20 RIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNM 62 (69) T ss_dssp CCCCCEEEEEEECSSSBCCEEEEECSSHHHHHHHHHHHHHSSC T ss_pred CEEEEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCC T ss_conf 6258999999467998194766514508999999999998692 No 28 >d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=24.41 E-value=18 Score=13.91 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=26.9 Q ss_pred CCEEEEEEEECCEEEEEEEECCHHHHHHHHHH--HHHHHCCC Q ss_conf 84599999999989999996898999999999--99997488 Q gi|254780940|r 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA--EVLKREGI 225 (227) Q Consensus 186 ~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~--~AL~klgi 225 (227) +|.-++-++..|+.+.+|. +|..+|++.+.+ ..|+++|+ T Consensus 50 ~P~~t~lIF~SGKivitGa-ks~~~~~~a~~~i~~~l~k~g~ 90 (99) T d1qnaa1 50 EPKTTALIFASGKMVCTGA-KSEDFSKMAARKYARIVQKLGF 90 (99) T ss_dssp TTTEEEEEETTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTC T ss_pred CCCEEEEEECCCEEEEECC-CCHHHHHHHHHHHHHHHHHCCC T ss_conf 9839999976977999646-9999999999999999998499 No 29 >d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]} Probab=22.05 E-value=7.3 Score=16.31 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=28.5 Q ss_pred HHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 478776410---4688789988888887443345454313877200 Q gi|254780940|r 55 ISTLLFNHF---DSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 (227) Q Consensus 55 v~~~l~~~~---p~~~eG~lt~lr~~lV~n~~La~~a~~lgl~~~l 97 (227) |++|+..+. +..+-.+++ ...-||..++.+.|+++|+..|- T Consensus 23 ia~yil~~~~~~~~~si~~lA--~~~~vS~sTi~Rf~kklG~~gf~ 66 (83) T d2o3fa1 23 LADYILAHPHKAIESTVNEIS--ALANSSDAAVIRLCKSLGLKGFQ 66 (83) T ss_dssp HHHHHHHCHHHHHTCCHHHHH--HHTTCCHHHHHHHHHHTTCSSHH T ss_pred HHHHHHCCHHHHHHCCHHHHH--HHHCCCHHHHHHHHHHHCCCCHH T ss_conf 999998299999883199999--99798998999999995899899 No 30 >d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=20.56 E-value=21 Score=13.44 Aligned_cols=38 Identities=18% Similarity=0.038 Sum_probs=27.7 Q ss_pred CCEEEEEEEECCE----EEEEEEECCHHHHHHHHHHHHHHHC Q ss_conf 8459999999998----9999996898999999999999974 Q gi|254780940|r 186 DPRFTVVVEISGL----APAQGMDCSKRAAEQVAAAEVLKRE 223 (227) Q Consensus 186 ~~~f~v~v~v~g~----~~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227) ...|.+-|.+++. -+|.|.+..-..|-++|..+|-++| T Consensus 21 ~~~f~alvvvGn~~G~vG~G~gKa~ev~~Ai~KA~~~Ak~nm 62 (69) T d2uube2 21 RFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNM 62 (69) T ss_dssp EEEEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHHHSE T ss_pred EEEEEEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHCC T ss_conf 257999999978998492023322088999999999998692 Done!