BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780940|ref|YP_003065353.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62] (227 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780940|ref|YP_003065353.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62] gi|254040617|gb|ACT57413.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 227/227 (100%), Positives = 227/227 (100%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF Sbjct: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE Sbjct: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR Sbjct: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT Sbjct: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 >gi|315122353|ref|YP_004062842.1| ribonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495755|gb|ADR52354.1| ribonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 232 Score = 362 bits (928), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 169/225 (75%), Positives = 200/225 (88%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 +L+ S LE+RIGY F+N+ LL+KALTHSSI HS QE+YERLEFLGDR+LG+LIS LLF++ Sbjct: 8 SLKLSALERRIGYTFSNKYLLKKALTHSSICHSPQENYERLEFLGDRVLGILISKLLFDY 67 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 FDSAKEGELS+RFNSLVSAETCSQVA+EL+L SFI VSSDLR +VC F+ IQADVVESL Sbjct: 68 FDSAKEGELSIRFNSLVSAETCSQVAKELELDSFIYVSSDLRMEVCKFVKGIQADVVESL 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAALYLDGGIE A +FV KYWK+R LK+G+FRRDAKTELQEWAHAKF VTP YK+ RSG Sbjct: 128 IAALYLDGGIESASSFVTKYWKKRVLKNGEFRRDAKTELQEWAHAKFRVTPTYKIMLRSG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 PDHDPRFTV+V++ GL +G+DCSKR+AEQ+AAAE+L+REGIW+ Sbjct: 188 PDHDPRFTVMVDVLGLYSGKGIDCSKRSAEQMAAAEILRREGIWS 232 >gi|222085390|ref|YP_002543920.1| ribonuclease III [Agrobacterium radiobacter K84] gi|254807233|sp|B9JC73|RNC_AGRRK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|221722838|gb|ACM25994.1| ribonuclease III [Agrobacterium radiobacter K84] Length = 239 Score = 278 bits (711), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 137/219 (62%), Positives = 166/219 (75%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 TLE IG+AF + L+ ALTH+S +YERLEFLGDR+LGL I+ LLF F +A Sbjct: 14 TLEAAIGHAFVEKERLDWALTHASARTHKAGNYERLEFLGDRVLGLCIAELLFRTFGTAT 73 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EGELSVR N LVSAETC+ VA E+ L FIR +D++K M +++ADVVESLIAALY Sbjct: 74 EGELSVRLNQLVSAETCAAVADEMQLHLFIRTGADVKKLTGKRMLNVRADVVESLIAALY 133 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 LDGG+EVA F+ +YW+ RA++ RRDAKTELQEWAHAKFGVTP Y+V RSGPDHDP Sbjct: 134 LDGGLEVARKFILRYWEGRAVRPDGARRDAKTELQEWAHAKFGVTPVYRVDDRSGPDHDP 193 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 RFTV VE++G AP G++ SKRAAEQVAA +L+REGIW Sbjct: 194 RFTVTVEVAGAAPETGIERSKRAAEQVAATRILEREGIW 232 >gi|209548601|ref|YP_002280518.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226741375|sp|B5ZW73|RNC_RHILW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|209534357|gb|ACI54292.1| Ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 239 Score = 275 bits (703), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 133/226 (58%), Positives = 172/226 (76%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +SA + LE IG+ FA + L++ALTH+S +YERLEFLGDR+LGL I+ LLF Sbjct: 7 LSAADRAKLEGLIGHDFAEKERLDRALTHASARTEKGGNYERLEFLGDRVLGLCIAELLF 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F +A EGELSVR N LVSAETC+ VA EL+L +IR +D++K M +++ADVVE Sbjct: 67 RTFGTAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAA+YLDGG+EVA F+ +YW+ RA+++ +RDAKTELQEW+HAKFGVTP Y+V R Sbjct: 127 SLIAAIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPNYRVDER 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDPRF V VE++G+ P G++ SKRAAEQVAA ++L+REGIW Sbjct: 187 SGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232 >gi|190891073|ref|YP_001977615.1| ribonuclease III protein [Rhizobium etli CIAT 652] gi|218515110|ref|ZP_03511950.1| ribonuclease III [Rhizobium etli 8C-3] gi|238692512|sp|B3PUN8|RNC_RHIE6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|190696352|gb|ACE90437.1| ribonuclease III protein [Rhizobium etli CIAT 652] gi|327191322|gb|EGE58355.1| ribonuclease III protein [Rhizobium etli CNPAF512] Length = 239 Score = 275 bits (702), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 133/226 (58%), Positives = 172/226 (76%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +SA + LE IG+ FA + L++ALTH+S +YERLEFLGDR+LGL I+ LLF Sbjct: 7 LSAADRAKLESLIGHDFAEKERLDRALTHASARTEKGSNYERLEFLGDRVLGLCIAELLF 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F +A EGELSVR N LVSAETC+ VA EL+L +IR +D++K M +++ADVVE Sbjct: 67 RTFGTAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAA+YLDGG+EVA F+ +YW+ RA+++ +RDAKTELQEW+HAKFGVTP Y+V R Sbjct: 127 SLIAAIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPLYRVDER 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDPRF V VE++G+ P G++ SKRAAEQVAA ++L+REGIW Sbjct: 187 SGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232 >gi|86357028|ref|YP_468920.1| ribonuclease III [Rhizobium etli CFN 42] gi|123512466|sp|Q2KAE3|RNC_RHIEC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|86281130|gb|ABC90193.1| ribonuclease III protein [Rhizobium etli CFN 42] Length = 239 Score = 274 bits (701), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 133/226 (58%), Positives = 172/226 (76%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +SA + LE IG+ FA + L++ALTH+S +YERLEFLGDR+LGL I+ LLF Sbjct: 7 LSAADRAKLEALIGHDFAEKERLDRALTHASARTEKGSNYERLEFLGDRVLGLCIAELLF 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F +A EGELSVR N LVSAETC+ VA EL+L +IR +D++K M +++ADVVE Sbjct: 67 RTFGTAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAA+YLDGG+EVA F+ +YW+ RA+++ +RDAKTELQEW+HAKFGVTP Y+V R Sbjct: 127 SLIAAIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDER 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDPRF V VE++G+ P G++ SKRAAEQVAA ++L+REGIW Sbjct: 187 SGPDHDPRFRVTVEVAGIKPESGVERSKRAAEQVAATKMLEREGIW 232 >gi|241203889|ref|YP_002974985.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857779|gb|ACS55446.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 239 Score = 274 bits (700), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 133/226 (58%), Positives = 172/226 (76%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +SA + LE IG+ FA + L++ALTH+S +YERLEFLGDR+LGL I+ LLF Sbjct: 7 LSAADRAKLEALIGHDFAEKERLDRALTHASARTEKGGNYERLEFLGDRVLGLCIAELLF 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F +A EGELSVR N LVSAETC+ VA EL+L +IR +D++K M +++ADVVE Sbjct: 67 RTFGTAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAA+YLDGG+EVA F+ +YW+ RA+++ +RDAKTELQEW+HAKFGVTP Y+V R Sbjct: 127 SLIAAIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDER 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDPRF V VE++G+ P G++ SKRAAEQVAA ++L+REGIW Sbjct: 187 SGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232 >gi|116251277|ref|YP_767115.1| ribonuclease III [Rhizobium leguminosarum bv. viciae 3841] gi|189043336|sp|Q1MJ54|RNC_RHIL3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|115255925|emb|CAK07006.1| putative ribonuclease III [Rhizobium leguminosarum bv. viciae 3841] Length = 239 Score = 273 bits (699), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 133/226 (58%), Positives = 172/226 (76%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +SA + LE IG+ FA + L++ALTH+S +YERLEFLGDR+LGL I+ LLF Sbjct: 7 LSAADRAKLEGLIGHDFAEKERLDRALTHASARTEKGGNYERLEFLGDRVLGLCIAELLF 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F +A EGELSVR N LVSAETC+ VA EL+L +IR +D++K M +++ADVVE Sbjct: 67 RTFGTAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAA+YLDGG+EVA F+ +YW+ RA+++ +RDAKTELQEW+HAKFGVTP Y+V R Sbjct: 127 SLIAAIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDER 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDPRF V VE++G+ P G++ SKRAAEQVAA ++L+REGIW Sbjct: 187 SGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232 >gi|227821403|ref|YP_002825373.1| ribonuclease III [Sinorhizobium fredii NGR234] gi|259491961|sp|C3M8S4|RNC_RHISN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|227340402|gb|ACP24620.1| ribonuclease III [Sinorhizobium fredii NGR234] Length = 239 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 131/226 (57%), Positives = 164/226 (72%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +SA + LE IGY FA + L++ALTHSS ++ +Y+RLEFLGDR+LGL ++ LLF Sbjct: 7 LSAEDRARLETAIGYQFAEKERLDRALTHSSARNARASNYQRLEFLGDRVLGLCVAELLF 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LVSAE+C++VA EL L +IR SD++K M +++ADVVE Sbjct: 67 QTFLDANEGELSVRLNQLVSAESCARVADELSLHEYIRTGSDVKKITGKHMMNVRADVVE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAA+YLDGG+E A FV ++W RA + RRDAKTELQEWAHAKFG P Y+ R Sbjct: 127 SLIAAIYLDGGLEAARRFVLRHWTDRAASADGARRDAKTELQEWAHAKFGAAPRYRTDDR 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDPRFTV VE+ G+AP G D SKR AEQ+AA +L+REG+W Sbjct: 187 SGPDHDPRFTVTVEVDGIAPETGTDRSKRGAEQIAAMRLLEREGVW 232 >gi|15964825|ref|NP_385178.1| ribonuclease III [Sinorhizobium meliloti 1021] gi|307300895|ref|ZP_07580664.1| ribonuclease III [Sinorhizobium meliloti BL225C] gi|307320712|ref|ZP_07600124.1| ribonuclease III [Sinorhizobium meliloti AK83] gi|22654067|sp|Q92R47|RNC_RHIME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|15074004|emb|CAC45651.1| Probable ribonuclease III [Sinorhizobium meliloti 1021] gi|306893639|gb|EFN24413.1| ribonuclease III [Sinorhizobium meliloti AK83] gi|306903850|gb|EFN34436.1| ribonuclease III [Sinorhizobium meliloti BL225C] Length = 238 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 131/218 (60%), Positives = 162/218 (74%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE IGY FA + L++ALTHSS +Y+RLEFLGDR+LGL ++ LLF F A E Sbjct: 14 LEAAIGYRFAEKERLDRALTHSSARSGRAINYQRLEFLGDRVLGLCVAELLFQTFTDANE 73 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELSVR N LVSAE+C++VA EL L FIR SD++K M +++ADVVESLIAA+YL Sbjct: 74 GELSVRLNQLVSAESCAKVADELSLHEFIRTGSDVKKITGKHMMNVRADVVESLIAAIYL 133 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG++ A FV ++W RA + RRDAKTELQEWAHAKFGV P+Y+ RSGPDHDPR Sbjct: 134 DGGLDAARRFVLEHWTHRAASADGARRDAKTELQEWAHAKFGVAPKYRTDDRSGPDHDPR 193 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 FTV VE+ G+AP G+D SKR AEQVAA ++L+REG+W Sbjct: 194 FTVTVEVDGIAPETGVDRSKRGAEQVAAMKLLEREGVW 231 >gi|150395906|ref|YP_001326373.1| ribonuclease III [Sinorhizobium medicae WSM419] gi|189043356|sp|A6U7A8|RNC_SINMW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|150027421|gb|ABR59538.1| Ribonuclease III [Sinorhizobium medicae WSM419] Length = 238 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 132/226 (58%), Positives = 165/226 (73%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 ++A + LE IGY FA + L++ALTHSS +Y+RLEFLGDRILGL ++ LLF Sbjct: 6 LNAEDRARLEAAIGYQFAEKERLDRALTHSSARSGRAINYQRLEFLGDRILGLCVAELLF 65 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LVSAE+C++VA EL L FIR SD++K M +++ADVVE Sbjct: 66 QTFSDANEGELSVRLNQLVSAESCAKVADELSLHEFIRTGSDVKKITGKHMMNVRADVVE 125 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAA+YLDGG+E A FV ++W RA + RRDAKTELQEWAHA+FGV P+Y+ R Sbjct: 126 SLIAAIYLDGGLEAARRFVLEHWTHRAASADGARRDAKTELQEWAHARFGVAPKYRTEDR 185 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDPRFTV VE+ G+ P G+D SKR AEQVAA ++L+REG+W Sbjct: 186 SGPDHDPRFTVTVEVDGIDPETGVDRSKRGAEQVAAMKLLEREGVW 231 >gi|325292414|ref|YP_004278278.1| ribonuclease III [Agrobacterium sp. H13-3] gi|325060267|gb|ADY63958.1| ribonuclease III [Agrobacterium sp. H13-3] Length = 237 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 129/226 (57%), Positives = 165/226 (73%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +S S LE IGY F ++ L++ALTH+S + +YERLEFLGDR+LGL ++ LLF Sbjct: 7 LSIAEISRLEALIGYEFKEKARLDRALTHASARSAAAGNYERLEFLGDRVLGLCVAELLF 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F +A EGELSVR N LVSAE+C+ + E+ L +FIR SD++K M +++ADVVE Sbjct: 67 STFRNASEGELSVRLNQLVSAESCAAIGDEMGLHNFIRTGSDVKKLTGKAMLNVRADVVE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIA LYLDGG+E + F+ KYW+ RA + RRDAKTELQEWAHA+F VTP Y+V R Sbjct: 127 SLIATLYLDGGLEASRKFILKYWQGRATRVDAGRRDAKTELQEWAHARFAVTPAYRVDDR 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDP FTV VEI G+ P G++ SKRAAEQVAA +L+REG+W Sbjct: 187 SGPDHDPSFTVTVEIPGVKPETGVERSKRAAEQVAATRLLEREGVW 232 >gi|159184588|ref|NP_354058.2| ribonuclease III [Agrobacterium tumefaciens str. C58] gi|22654057|sp|Q8UGK2|RNC_AGRT5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|159139890|gb|AAK86843.2| ribonuclease III [Agrobacterium tumefaciens str. C58] Length = 239 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 129/226 (57%), Positives = 164/226 (72%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +SA S LE IGY F ++ L++ALTH+S + +YERLEFLGDR+LGL ++ LLF Sbjct: 7 LSADEISRLEALIGYEFKEKARLDRALTHASARSAAAGNYERLEFLGDRVLGLCVAELLF 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F +A EGELSVR N LVSAE+C+ + E+ L +FIR SD++K M +++ADVVE Sbjct: 67 STFRNASEGELSVRLNQLVSAESCAAIGDEMGLHNFIRTGSDVKKLTGKAMLNVRADVVE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIA LYLDGG+E + F+ KYW+ RA RRDAKTELQEWAHA+F TP Y+V R Sbjct: 127 SLIATLYLDGGLEASRKFILKYWQGRATSVDAGRRDAKTELQEWAHARFAATPAYRVDDR 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDP FTV VEI G+ P G++ SKRAAEQVAA +L+REG+W Sbjct: 187 SGPDHDPSFTVTVEIPGVKPETGVERSKRAAEQVAATRLLEREGVW 232 >gi|163760595|ref|ZP_02167676.1| putative ribonuclease III [Hoeflea phototrophica DFL-43] gi|162282210|gb|EDQ32500.1| putative ribonuclease III [Hoeflea phototrophica DFL-43] Length = 244 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 131/217 (60%), Positives = 165/217 (76%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E+RIG+ F++ LE+ALTH+S + +YERLEFLGDR+LGL ++ LLF HF +A EG Sbjct: 16 EERIGHQFSSPVRLERALTHASTRTNTNGNYERLEFLGDRVLGLCVAELLFGHFGNATEG 75 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 E+SVR N LVSA+TCS+VA +L L FIR +D++K M +++ADVVESLIAA+YLD Sbjct: 76 EMSVRLNQLVSAQTCSEVADDLGLHEFIRTGADVKKLTGKRMANVRADVVESLIAAIYLD 135 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 G+E A +F+ K+WK RAL RRDAKTELQEWAHA+FGVTP Y+VT R+GPDH+P F Sbjct: 136 AGLEAARSFIHKHWKARALAEDGARRDAKTELQEWAHARFGVTPVYRVTDRAGPDHEPVF 195 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 TV VEI+G PA G SKRAAEQ AA VL+REG+W Sbjct: 196 TVTVEINGAKPASGESSSKRAAEQAAATAVLEREGVW 232 >gi|222148081|ref|YP_002549038.1| ribonuclease III [Agrobacterium vitis S4] gi|259491897|sp|B9JUN7|RNC_AGRVS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|221735069|gb|ACM36032.1| ribonuclease III [Agrobacterium vitis S4] Length = 239 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 131/227 (57%), Positives = 160/227 (70%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 ++A +E IGY F + L+KALTHSS + YERLEFLGDR+LGL ++ LF Sbjct: 7 LTAEEREKVEAVIGYHFIGKERLDKALTHSSARPAKGSDYERLEFLGDRVLGLCVAEHLF 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F +A EGELSVR N LVSAETC+ VA E+ L +IR +D++K M +++ADVVE Sbjct: 67 KVFRAATEGELSVRLNQLVSAETCAAVADEIQLHRYIRTGADVKKLTDKNMLNVRADVVE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAA+YLD G+E A FV K+W +RA + RRDAKTELQEWAHAKF VTP Y+V R Sbjct: 127 SLIAAIYLDAGLEAARAFVLKFWAERASRQDAGRRDAKTELQEWAHAKFAVTPVYRVADR 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 SGPDHDP FTV VEI L P G+D SKRAAEQ AA +L+REG+WT Sbjct: 187 SGPDHDPSFTVTVEIGKLEPETGIDRSKRAAEQAAATRLLEREGVWT 233 >gi|17987570|ref|NP_540204.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M] gi|23501548|ref|NP_697675.1| ribonuclease III [Brucella suis 1330] gi|62289621|ref|YP_221414.1| ribonuclease III [Brucella abortus bv. 1 str. 9-941] gi|82699549|ref|YP_414123.1| ribonuclease III [Brucella melitensis biovar Abortus 2308] gi|161618631|ref|YP_001592518.1| ribonuclease III [Brucella canis ATCC 23365] gi|163842933|ref|YP_001627337.1| ribonuclease III [Brucella suis ATCC 23445] gi|189023875|ref|YP_001934643.1| ribonuclease III [Brucella abortus S19] gi|225852182|ref|YP_002732415.1| ribonuclease III [Brucella melitensis ATCC 23457] gi|254688937|ref|ZP_05152191.1| ribonuclease III [Brucella abortus bv. 6 str. 870] gi|254693419|ref|ZP_05155247.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya] gi|254697072|ref|ZP_05158900.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59] gi|254701449|ref|ZP_05163277.1| ribonuclease III [Brucella suis bv. 5 str. 513] gi|254703995|ref|ZP_05165823.1| ribonuclease III [Brucella suis bv. 3 str. 686] gi|254707631|ref|ZP_05169459.1| ribonuclease III [Brucella pinnipedialis M163/99/10] gi|254709787|ref|ZP_05171598.1| ribonuclease III [Brucella pinnipedialis B2/94] gi|254713789|ref|ZP_05175600.1| ribonuclease III [Brucella ceti M644/93/1] gi|254717154|ref|ZP_05178965.1| ribonuclease III [Brucella ceti M13/05/1] gi|254718802|ref|ZP_05180613.1| ribonuclease III [Brucella sp. 83/13] gi|254729968|ref|ZP_05188546.1| ribonuclease III [Brucella abortus bv. 4 str. 292] gi|256031277|ref|ZP_05444891.1| ribonuclease III [Brucella pinnipedialis M292/94/1] gi|256044358|ref|ZP_05447262.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1] gi|256060789|ref|ZP_05450951.1| ribonuclease III [Brucella neotomae 5K33] gi|256113201|ref|ZP_05454069.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether] gi|256159387|ref|ZP_05457169.1| ribonuclease III [Brucella ceti M490/95/1] gi|256254685|ref|ZP_05460221.1| ribonuclease III [Brucella ceti B1/94] gi|256257185|ref|ZP_05462721.1| ribonuclease III [Brucella abortus bv. 9 str. C68] gi|256264307|ref|ZP_05466839.1| ribonuclease III family protein [Brucella melitensis bv. 2 str. 63/9] gi|256369099|ref|YP_003106607.1| ribonuclease III [Brucella microti CCM 4915] gi|260168415|ref|ZP_05755226.1| ribonuclease III [Brucella sp. F5/99] gi|260883452|ref|ZP_05895066.1| ribonuclease III [Brucella abortus bv. 9 str. C68] gi|261221863|ref|ZP_05936144.1| ribonuclease III [Brucella ceti B1/94] gi|261324780|ref|ZP_05963977.1| ribonuclease III [Brucella neotomae 5K33] gi|265988360|ref|ZP_06100917.1| ribonuclease III [Brucella pinnipedialis M292/94/1] gi|265990773|ref|ZP_06103330.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1] gi|265994609|ref|ZP_06107166.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether] gi|265997827|ref|ZP_06110384.1| ribonuclease III [Brucella ceti M490/95/1] gi|54039241|sp|P66665|RNC_BRUSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54041613|sp|P66664|RNC_BRUME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|75497081|sp|Q57E81|RNC_BRUAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101615|sp|Q2YN02|RNC_BRUA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043295|sp|A9MA35|RNC_BRUC2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043296|sp|B0CKY7|RNC_BRUSI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238691497|sp|B2SAD9|RNC_BRUA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807239|sp|C0RI03|RNC_BRUMB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|17983275|gb|AAL52468.1| ribonuclease iii [Brucella melitensis bv. 1 str. 16M] gi|23347459|gb|AAN29590.1| ribonuclease III [Brucella suis 1330] gi|62195753|gb|AAX74053.1| ribonuclease III [Brucella abortus bv. 1 str. 9-941] gi|82615650|emb|CAJ10637.1| Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain [Brucella melitensis biovar Abortus 2308] gi|161335442|gb|ABX61747.1| ribonuclease III [Brucella canis ATCC 23365] gi|163673656|gb|ABY37767.1| ribonuclease III [Brucella suis ATCC 23445] gi|189019447|gb|ACD72169.1| Ribonuclease III family [Brucella abortus S19] gi|225640547|gb|ACO00461.1| ribonuclease III [Brucella melitensis ATCC 23457] gi|255999259|gb|ACU47658.1| ribonuclease III [Brucella microti CCM 4915] gi|260872980|gb|EEX80049.1| ribonuclease III [Brucella abortus bv. 9 str. C68] gi|260920447|gb|EEX87100.1| ribonuclease III [Brucella ceti B1/94] gi|261300760|gb|EEY04257.1| ribonuclease III [Brucella neotomae 5K33] gi|262552295|gb|EEZ08285.1| ribonuclease III [Brucella ceti M490/95/1] gi|262765722|gb|EEZ11511.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether] gi|263001557|gb|EEZ14132.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1] gi|263094580|gb|EEZ18378.1| ribonuclease III family protein [Brucella melitensis bv. 2 str. 63/9] gi|264660557|gb|EEZ30818.1| ribonuclease III [Brucella pinnipedialis M292/94/1] Length = 245 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 119/220 (54%), Positives = 156/220 (70%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+R G+ F N LE+ALTHSS+ + +YERLEFLGDR+LGL ++ +LF F A Sbjct: 20 SILEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEA 79 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELSVR N+LV+AETC+ +A E+ LA I SD++ + +++ADVVE+LIA + Sbjct: 80 SEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATI 139 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG+E A +F+ +YWK+R+L++G RRDAKTELQEWAH + V P Y + RSGPDHD Sbjct: 140 YLDGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHD 199 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 P F V V + G AP +G SKR AEQ AA +L REG+W Sbjct: 200 PLFLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 239 >gi|237815116|ref|ZP_04594114.1| ribonuclease III [Brucella abortus str. 2308 A] gi|260545623|ref|ZP_05821364.1| ribonuclease III [Brucella abortus NCTC 8038] gi|260563710|ref|ZP_05834196.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M] gi|260566758|ref|ZP_05837228.1| ribonuclease III family protein [Brucella suis bv. 4 str. 40] gi|260754424|ref|ZP_05866772.1| ribonuclease III [Brucella abortus bv. 6 str. 870] gi|260757643|ref|ZP_05869991.1| ribonuclease III [Brucella abortus bv. 4 str. 292] gi|260761470|ref|ZP_05873813.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59] gi|261213670|ref|ZP_05927951.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya] gi|261218969|ref|ZP_05933250.1| ribonuclease III [Brucella ceti M13/05/1] gi|261315123|ref|ZP_05954320.1| ribonuclease III [Brucella pinnipedialis M163/99/10] gi|261317321|ref|ZP_05956518.1| ribonuclease III [Brucella pinnipedialis B2/94] gi|261321532|ref|ZP_05960729.1| ribonuclease III [Brucella ceti M644/93/1] gi|261751989|ref|ZP_05995698.1| ribonuclease III [Brucella suis bv. 5 str. 513] gi|261754648|ref|ZP_05998357.1| ribonuclease III [Brucella suis bv. 3 str. 686] gi|261757876|ref|ZP_06001585.1| ribonuclease III family [Brucella sp. F5/99] gi|265983784|ref|ZP_06096519.1| ribonuclease III [Brucella sp. 83/13] gi|294852025|ref|ZP_06792698.1| ribonuclease III [Brucella sp. NVSL 07-0026] gi|297248033|ref|ZP_06931751.1| ribonuclease III [Brucella abortus bv. 5 str. B3196] gi|237789953|gb|EEP64163.1| ribonuclease III [Brucella abortus str. 2308 A] gi|260097030|gb|EEW80905.1| ribonuclease III [Brucella abortus NCTC 8038] gi|260153726|gb|EEW88818.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M] gi|260156276|gb|EEW91356.1| ribonuclease III family protein [Brucella suis bv. 4 str. 40] gi|260667961|gb|EEX54901.1| ribonuclease III [Brucella abortus bv. 4 str. 292] gi|260671902|gb|EEX58723.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59] gi|260674532|gb|EEX61353.1| ribonuclease III [Brucella abortus bv. 6 str. 870] gi|260915277|gb|EEX82138.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya] gi|260924058|gb|EEX90626.1| ribonuclease III [Brucella ceti M13/05/1] gi|261294222|gb|EEX97718.1| ribonuclease III [Brucella ceti M644/93/1] gi|261296544|gb|EEY00041.1| ribonuclease III [Brucella pinnipedialis B2/94] gi|261304149|gb|EEY07646.1| ribonuclease III [Brucella pinnipedialis M163/99/10] gi|261737860|gb|EEY25856.1| ribonuclease III family [Brucella sp. F5/99] gi|261741742|gb|EEY29668.1| ribonuclease III [Brucella suis bv. 5 str. 513] gi|261744401|gb|EEY32327.1| ribonuclease III [Brucella suis bv. 3 str. 686] gi|264662376|gb|EEZ32637.1| ribonuclease III [Brucella sp. 83/13] gi|294820614|gb|EFG37613.1| ribonuclease III [Brucella sp. NVSL 07-0026] gi|297175202|gb|EFH34549.1| ribonuclease III [Brucella abortus bv. 5 str. B3196] gi|326408683|gb|ADZ65748.1| Ribonuclease III family [Brucella melitensis M28] gi|326538408|gb|ADZ86623.1| ribonuclease III [Brucella melitensis M5-90] Length = 234 Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 119/220 (54%), Positives = 156/220 (70%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+R G+ F N LE+ALTHSS+ + +YERLEFLGDR+LGL ++ +LF F A Sbjct: 9 SILEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEA 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELSVR N+LV+AETC+ +A E+ LA I SD++ + +++ADVVE+LIA + Sbjct: 69 SEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATI 128 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG+E A +F+ +YWK+R+L++G RRDAKTELQEWAH + V P Y + RSGPDHD Sbjct: 129 YLDGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHD 188 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 P F V V + G AP +G SKR AEQ AA +L REG+W Sbjct: 189 PLFLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 228 >gi|148560325|ref|YP_001258645.1| ribonuclease III [Brucella ovis ATCC 25840] gi|306837522|ref|ZP_07470397.1| ribonuclease III [Brucella sp. NF 2653] gi|306842074|ref|ZP_07474746.1| ribonuclease III [Brucella sp. BO2] gi|148371582|gb|ABQ61561.1| ribonuclease III [Brucella ovis ATCC 25840] gi|306287824|gb|EFM59247.1| ribonuclease III [Brucella sp. BO2] gi|306407414|gb|EFM63618.1| ribonuclease III [Brucella sp. NF 2653] Length = 257 Score = 248 bits (633), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 119/220 (54%), Positives = 156/220 (70%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+R G+ F N LE+ALTHSS+ + +YERLEFLGDR+LGL ++ +LF F A Sbjct: 32 SILEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEA 91 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELSVR N+LV+AETC+ +A E+ LA I SD++ + +++ADVVE+LIA + Sbjct: 92 SEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATI 151 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG+E A +F+ +YWK+R+L++G RRDAKTELQEWAH + V P Y + RSGPDHD Sbjct: 152 YLDGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHD 211 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 P F V V + G AP +G SKR AEQ AA +L REG+W Sbjct: 212 PLFLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 251 >gi|306845262|ref|ZP_07477838.1| ribonuclease III [Brucella sp. BO1] gi|306274421|gb|EFM56228.1| ribonuclease III [Brucella sp. BO1] Length = 257 Score = 248 bits (633), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 119/220 (54%), Positives = 156/220 (70%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+R G+ F N LE+ALTHSS+ + +YERLEFLGDR+LGL ++ +LF F A Sbjct: 32 SILEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEA 91 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELSVR N+LV+AETC+ +A E+ LA I SD++ + +++ADVVE+LIA + Sbjct: 92 SEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATI 151 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG+E A +F+ +YWK+R+L++G RRDAKTELQEWAH + V P Y + RSGPDHD Sbjct: 152 YLDGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHD 211 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 P F V V + G AP +G SKR AEQ AA +L REG+W Sbjct: 212 PLFLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 251 >gi|153009954|ref|YP_001371169.1| ribonuclease III [Ochrobactrum anthropi ATCC 49188] gi|151561842|gb|ABS15340.1| Ribonuclease III [Ochrobactrum anthropi ATCC 49188] Length = 234 Score = 240 bits (613), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 114/220 (51%), Positives = 154/220 (70%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LE+R G+ F N L++ALTHSS+ + +YERLEFLGDR+LGL ++ +LF+ F A Sbjct: 9 AILEERTGHRFLNLKRLDRALTHSSVQAPSRANYERLEFLGDRVLGLTVAEMLFDEFPDA 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELSVR N+LV+AETC+ +A E+ LA+ I SD++ + +++ADVVE+LIA + Sbjct: 69 SEGELSVRLNALVNAETCAAIADEIGLANLIHTGSDIKSLNDKRLLNVRADVVEALIATI 128 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG+E FV +YW++R+L++G RRDAKTELQEWAH + V P Y + R+GPDHD Sbjct: 129 YLDGGLEAVRPFVKRYWEKRSLQTGAARRDAKTELQEWAHQQGNVHPSYAIISRTGPDHD 188 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 P F V V + G A G SKR AEQ AA +L REG+W Sbjct: 189 PLFAVEVTVKGFATETGEGRSKRIAEQNAAEAMLYREGVW 228 >gi|240850197|ref|YP_002971590.1| ribonuclease III [Bartonella grahamii as4aup] gi|240267320|gb|ACS50908.1| ribonuclease III [Bartonella grahamii as4aup] Length = 235 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 119/226 (52%), Positives = 151/226 (66%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L L K G+ F + L+KALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 1 MKRLMIDQLFKLTGHRFKDEERLKKALTHSSVQDSEQGNYERLEFLGDRVLGLLIAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +ARE+ L IRV +++ + ++ ADVVE Sbjct: 61 QLFPQASEGELSVRLNHLVNAQTCADIAREMRLPDMIRVGFEMKNFEGRRLINMHADVVE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG+E F+ KYW RA K RRDAKTELQEWAH + P Y+V R Sbjct: 121 ALIAVIYLDGGLESVRPFIQKYWHSRAKKMDAGRRDAKTELQEWAHIQGNAQPHYQVIKR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDP F V V ISG A G SKR AE++AA ++L+REG+W Sbjct: 181 SGPDHDPVFMVEVSISGFASEIGQGSSKRYAERMAAEKILRREGVW 226 >gi|81647146|sp|Q6G082|RNC_BARQU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|49239570|emb|CAF25927.1| Ribonuclease III [Bartonella quintana str. Toulouse] Length = 235 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 117/226 (51%), Positives = 153/226 (67%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ LE+ + F + L+KALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 1 MNCPIIDQLERLTEHHFKDEERLKKALTHSSVQDSEQGNYERLEFLGDRVLGLLIAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +A E+ L I V ++R +T++ ADV+E Sbjct: 61 KLFPQASEGELSVRLNGLVNAQTCADIALEMGLPDMIHVGFEMRNLKGRRLTNMHADVIE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG++ F+ +YW+ RA + RRDAKTELQEWAH + GV P Y+V R Sbjct: 121 ALIAVMYLDGGLKSVRPFIRRYWQSRAKQMDAGRRDAKTELQEWAHVQGGVQPHYRVVKR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDP F V V I G AP G SKR AE++AA +VL+REGIW Sbjct: 181 SGPDHDPVFMVEVSILGFAPEIGQGNSKRCAERMAAEKVLRREGIW 226 >gi|161761284|ref|YP_032108.2| ribonuclease III [Bartonella quintana str. Toulouse] Length = 246 Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 116/218 (53%), Positives = 151/218 (69%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ + F + L+KALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ F A E Sbjct: 20 LERLTEHHFKDEERLKKALTHSSVQDSEQGNYERLEFLGDRVLGLLIAEMLYKLFPQASE 79 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELSVR N LV+A+TC+ +A E+ L I V ++R +T++ ADV+E+LIA +YL Sbjct: 80 GELSVRLNGLVNAQTCADIALEMGLPDMIHVGFEMRNLKGRRLTNMHADVIEALIAVMYL 139 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG++ F+ +YW+ RA + RRDAKTELQEWAH + GV P Y+V RSGPDHDP Sbjct: 140 DGGLKSVRPFIRRYWQSRAKQMDAGRRDAKTELQEWAHVQGGVQPHYRVVKRSGPDHDPV 199 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 F V V I G AP G SKR AE++AA +VL+REGIW Sbjct: 200 FMVEVSILGFAPEIGQGNSKRCAERMAAEKVLRREGIW 237 >gi|163867992|ref|YP_001609196.1| ribonuclease III [Bartonella tribocorum CIP 105476] gi|189043294|sp|A9IRN0|RNC_BART1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|161017643|emb|CAK01201.1| ribonuclease III [Bartonella tribocorum CIP 105476] Length = 235 Score = 237 bits (605), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 117/226 (51%), Positives = 152/226 (67%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L L K G+ F + L++ALTH+S+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 1 MRRLMIDQLFKLTGHRFKDEEKLKRALTHASVQDSEQGNYERLEFLGDRVLGLLIAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +ARE+ L I+V ++R + ++ ADVVE Sbjct: 61 QLFPQASEGELSVRLNHLVNAQTCADIAREMRLPDMIQVGFEMRNFEGRRLINMHADVVE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG+E F+ KYW+ RA K RRDAKTELQEWAH + P Y+V R Sbjct: 121 ALIAVMYLDGGLESVRPFIQKYWQSRAKKMDAGRRDAKTELQEWAHIQGDAQPHYQVIKR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDP F V V ISG A G SKR AE++AA ++L+REG+W Sbjct: 181 SGPDHDPVFMVEVSISGFASEIGQGSSKRNAERMAAEKILRREGVW 226 >gi|239831496|ref|ZP_04679825.1| ribonuclease III [Ochrobactrum intermedium LMG 3301] gi|239823763|gb|EEQ95331.1| ribonuclease III [Ochrobactrum intermedium LMG 3301] Length = 234 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 112/220 (50%), Positives = 153/220 (69%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LE+R G+ F N L++ALTHSS+ + +YERLEFLGDR+LGL ++ +L++ F A Sbjct: 9 AILEERTGHRFLNVKRLDRALTHSSVQAPSRANYERLEFLGDRVLGLTVAEMLYDEFPEA 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELSVR N+LV+AETC+ +A E+ LA I SD++ + +++ADVVE+LIA + Sbjct: 69 SEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATI 128 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG++ FV ++WK+R+L++G RRDAKTELQEWAH + V P Y + R+GPDHD Sbjct: 129 YLDGGLDAVRPFVKRFWKKRSLQTGAARRDAKTELQEWAHQQGNVHPAYSIISRTGPDHD 188 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 P F V V + G A G SKR AEQ AA +L REG+W Sbjct: 189 PLFMVEVTVKGFAAETGEGRSKRIAEQHAAEAMLYREGVW 228 >gi|161761286|ref|YP_033345.2| ribonuclease III [Bartonella henselae str. Houston-1] Length = 246 Score = 235 bits (599), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 116/218 (53%), Positives = 154/218 (70%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK G+ F ++ L+KALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ F A E Sbjct: 20 LEKLTGHYFKDKKKLKKALTHSSVQGSEQGNYERLEFLGDRVLGLLIAEMLYQLFPQASE 79 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELSVR NSLV+A+TC+ +A E++L I V +++ +T++ ADV+E+LIA +YL Sbjct: 80 GELSVRLNSLVNAQTCADIALEMELPVMIHVGFEMKNLKGRRLTNMYADVIEALIAVIYL 139 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG+E F+ +YW+ RA + RRDAKT+LQEWAH + GV P Y+V RSGPDHDP Sbjct: 140 DGGLESVRPFIQRYWQSRAKQMDAGRRDAKTQLQEWAHVQGGVQPHYRVVKRSGPDHDPV 199 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 F V V I G A G SKR AE++AA ++L+REGIW Sbjct: 200 FMVEVSIPGFASEIGQGNSKRCAERMAAEKILRREGIW 237 >gi|81648073|sp|Q6G459|RNC_BARHE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|49238110|emb|CAF27317.1| Ribonuclease III [Bartonella henselae str. Houston-1] Length = 235 Score = 235 bits (599), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 116/218 (53%), Positives = 154/218 (70%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK G+ F ++ L+KALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ F A E Sbjct: 9 LEKLTGHYFKDKKKLKKALTHSSVQGSEQGNYERLEFLGDRVLGLLIAEMLYQLFPQASE 68 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELSVR NSLV+A+TC+ +A E++L I V +++ +T++ ADV+E+LIA +YL Sbjct: 69 GELSVRLNSLVNAQTCADIALEMELPVMIHVGFEMKNLKGRRLTNMYADVIEALIAVIYL 128 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG+E F+ +YW+ RA + RRDAKT+LQEWAH + GV P Y+V RSGPDHDP Sbjct: 129 DGGLESVRPFIQRYWQSRAKQMDAGRRDAKTQLQEWAHVQGGVQPHYRVVKRSGPDHDPV 188 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 F V V I G A G SKR AE++AA ++L+REGIW Sbjct: 189 FMVEVSIPGFASEIGQGNSKRCAERMAAEKILRREGIW 226 >gi|121602768|ref|YP_988789.1| ribonuclease III [Bartonella bacilliformis KC583] gi|189043293|sp|A1US36|RNC_BARBK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|120614945|gb|ABM45546.1| ribonuclease III [Bartonella bacilliformis KC583] Length = 235 Score = 234 bits (598), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 111/218 (50%), Positives = 150/218 (68%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+K G++F N LL+KALTHSS+ S Q +YERLEFLGDR+LGLL++ +L+ F A E Sbjct: 9 LKKLTGHSFKNEDLLKKALTHSSVQRSEQGNYERLEFLGDRVLGLLVAEMLYQFFPQASE 68 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELSVR N LV+A+TC+ +ARE+ L + V +++ + ++ ADVVE+LIA +YL Sbjct: 69 GELSVRLNGLVNAQTCADIAREIGLPDMVHVGCEMKNLEGRRLANMHADVVEALIAVIYL 128 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG++ F+ +YW+ RA K RRDAKTELQEWAH + GV P+Y+V R G DHDP Sbjct: 129 DGGLKSVRPFIQRYWQDRAKKIDASRRDAKTELQEWAHTQNGVQPQYRVIKRCGLDHDPV 188 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 F V V + G G SKR AE+ AA ++L+REG+W Sbjct: 189 FVVEVSVPGFVSEVGEGGSKRHAERAAAEKILRREGMW 226 >gi|90420862|ref|ZP_01228767.1| ribonuclease III [Aurantimonas manganoxydans SI85-9A1] gi|90334837|gb|EAS48609.1| ribonuclease III [Aurantimonas manganoxydans SI85-9A1] Length = 252 Score = 233 bits (594), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 122/224 (54%), Positives = 152/224 (67%), Gaps = 6/224 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY------QESYERLEFLGDRILGLLISTLLFNH 62 LE RIG F ++ E+ALTHSS+ S + SYERLEFLGDR+LGL+++ LF+ Sbjct: 25 LESRIGITFHEKARFERALTHSSLRSSKGGKGEGERSYERLEFLGDRVLGLVVAEKLFDM 84 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A EGELS+R NSLVSA+TC+++A EL L F+R DL+K SI+AD+VESL Sbjct: 85 FPGADEGELSLRLNSLVSADTCAEIADELGLYEFVRHGGDLKKLKSDRTKSIRADLVESL 144 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YL G+E A F+ +YW R KS RRDAKT LQEWAH + VTP+Y++ RSG Sbjct: 145 IAAIYLGEGLETARDFIVRYWGGRLGKSVAARRDAKTALQEWAHTRGPVTPQYEIVERSG 204 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 PDHDP FTV V I +APA G S+R AEQ AA VL RE +W Sbjct: 205 PDHDPLFTVRVSIPDVAPADGQGRSRRIAEQEAATAVLIRESVW 248 >gi|319408283|emb|CBI81936.1| ribonuclease III [Bartonella schoenbuchensis R1] Length = 236 Score = 233 bits (594), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 110/218 (50%), Positives = 151/218 (69%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK G+ F N + L++ALTHSS+ + +YERLEFLGDR+LGLL++ +L+ F A E Sbjct: 10 LEKLTGHRFKNENRLKRALTHSSVQGLAEGNYERLEFLGDRVLGLLVAEMLYQFFPHASE 69 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELSVR N LV+ +TC+++A E+ L I V +++ + ++ ADV+E+LIA +YL Sbjct: 70 GELSVRLNGLVNTQTCAEIALEMGLPDMIHVGFEMKNLENRRVANMYADVIEALIAVMYL 129 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DG +E +F+ KYW+ RA K RRDAKTELQEWAH + G P+Y+V R GPDHDP Sbjct: 130 DGDLECVRSFIRKYWQDRARKMDAGRRDAKTELQEWAHTQDGAQPQYRVVKRYGPDHDPI 189 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 F V V++ G AP G SKR AE+VAA ++L+REG+W Sbjct: 190 FMVEVKVFGFAPEIGQGSSKRHAERVAAEKILRREGVW 227 >gi|114706260|ref|ZP_01439162.1| ribonuclease III [Fulvimarina pelagi HTCC2506] gi|114538121|gb|EAU41243.1| ribonuclease III [Fulvimarina pelagi HTCC2506] Length = 234 Score = 231 bits (588), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 116/220 (52%), Positives = 154/220 (70%), Gaps = 2/220 (0%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 LEKRIG F++ L++ALTHSS S + SYERLEFLGDR+LGL+++ LF F +A Sbjct: 11 LEKRIGVRFSDHDRLQRALTHSSFRSSKGDGRSYERLEFLGDRVLGLVVADKLFEMFPNA 70 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS+R NSLV+AETC+ VA E+ L F+R DLRK S SI+AD++ESLIAA+ Sbjct: 71 DEGELSLRLNSLVNAETCAAVADEIGLYEFVRQGGDLRKLAASRTKSIRADLMESLIAAI 130 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YL+ G++ A F++ +W +R KS RRD KT LQEWAH + P+Y+V RSGPDH+ Sbjct: 131 YLNSGLDDARAFIESHWGERLNKSVAARRDPKTALQEWAHQRGPEPPKYEVVDRSGPDHN 190 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 P+F + V I+G+ P++G SKR AEQ AA +L RE +W Sbjct: 191 PKFRIKVSIAGVDPSEGEGSSKRLAEQSAATAMLIRENVW 230 >gi|319404018|emb|CBI77606.1| ribonuclease III [Bartonella rochalimae ATCC BAA-1498] Length = 227 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 112/218 (51%), Positives = 145/218 (66%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK G++F + L++ALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ F A E Sbjct: 9 LEKLTGHSFKDADRLKRALTHSSVQSSEQGNYERLEFLGDRVLGLLIAEMLYQIFPQASE 68 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELSVR N LV+A+TC+ +A E+ L + V +++ + +I ADV+E+LIA +YL Sbjct: 69 GELSVRLNGLVNAQTCADIALEMGLPDMVHVGCEMKNLEGRRLVNIYADVIEALIAVIYL 128 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG+E + +YW RA K RRDAKTELQEWAH + P Y+V R GPDHDP Sbjct: 129 DGGLESVRPVIQRYWHDRAQKMNAGRRDAKTELQEWAHTQDSAQPYYQVVQRYGPDHDPV 188 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 F V V I G AP G SKR AE+ AA +L+REGIW Sbjct: 189 FMVEVSICGYAPEIGRGSSKRQAERDAAERILRREGIW 226 >gi|319407031|emb|CBI80668.1| ribonuclease III [Bartonella sp. 1-1C] Length = 227 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 111/218 (50%), Positives = 145/218 (66%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK G++F + L++ALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ F A E Sbjct: 9 LEKLTGHSFKDADRLKRALTHSSVQSSEQGNYERLEFLGDRVLGLLIAEMLYQIFPQASE 68 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELSVR N LV+A+TC+ +A E+ L + V +++ + +I ADV+E+LIA +YL Sbjct: 69 GELSVRLNGLVNAQTCADIALEMGLPDMVHVGCEMKNLEGRRLVNIYADVIEALIAVIYL 128 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG+E + +YW RA K RRD+KTELQEWAH + P Y+V R GPDHDP Sbjct: 129 DGGLESVRPVIQRYWHDRAKKMNAGRRDSKTELQEWAHTQDSAQPHYQVVQRYGPDHDPV 188 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 F V V I G AP G SKR AE+ AA +L+REGIW Sbjct: 189 FMVEVSICGYAPEIGRGSSKRQAERDAAERILRREGIW 226 >gi|319898692|ref|YP_004158785.1| ribonuclease III [Bartonella clarridgeiae 73] gi|319402656|emb|CBI76202.1| ribonuclease III [Bartonella clarridgeiae 73] Length = 234 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 113/218 (51%), Positives = 147/218 (67%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ ++F + L+KALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ F A E Sbjct: 9 LERLTEHSFKDADKLKKALTHSSVQSSEQGNYERLEFLGDRVLGLLIAEMLYQIFPQASE 68 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELSVR N LV+A+TC+ +A E+ L + IRV +++ + ++ ADV+E+LIA +YL Sbjct: 69 GELSVRLNGLVNAQTCADIALEMGLPNMIRVGCEMKNLEGRRLANMYADVIEALIAVIYL 128 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +GG+E F+ KYW+ RA K RRDAKTELQEWAH K P Y+V R GPDHDP Sbjct: 129 EGGLESVRPFIQKYWQNRAKKMNAGRRDAKTELQEWAHTKDRAHPHYQVLQRCGPDHDPI 188 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 F V V I G A G SKR AE+ AA +L+REGIW Sbjct: 189 FVVEVSICGFASEIGRGSSKRQAERDAAERILRREGIW 226 >gi|319405458|emb|CBI79077.1| ribonuclease III [Bartonella sp. AR 15-3] Length = 235 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 109/218 (50%), Positives = 146/218 (66%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK G++F + L++ALTH+S+ S +YERLEFLGDR+LGLLI+ +L+ F A E Sbjct: 9 LEKLTGHSFKDVDRLKRALTHASVQSSENGNYERLEFLGDRVLGLLIAEMLYKIFPQASE 68 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELSVR N LV+A+TC+ +A E+ L+ + V +++ + ++ ADV+E+LIA +YL Sbjct: 69 GELSVRLNGLVNAQTCADIALEMGLSDMVHVGCEMKNLEGRRLANVYADVIEALIAVIYL 128 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG+E + +YW+ RA K RRDAKTELQEWAH + P Y+V R GPDHDP Sbjct: 129 DGGLESVRPVIQRYWQDRAKKMNAGRRDAKTELQEWAHTQDNAQPHYQVVQRYGPDHDPI 188 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 F V V I G AP G SKR AE+ AA +L+REGIW Sbjct: 189 FIVEVSICGYAPEIGRGSSKRQAERDAAERILRREGIW 226 >gi|328543513|ref|YP_004303622.1| ribonuclease III [polymorphum gilvum SL003B-26A1] gi|326413257|gb|ADZ70320.1| Ribonuclease III [Polymorphum gilvum SL003B-26A1] Length = 234 Score = 218 bits (555), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 111/223 (49%), Positives = 146/223 (65%), Gaps = 3/223 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 TLE R+GY+F +++LL +ALTH+S + + SY+RLEFLGDR+LGL ++T+L HF Sbjct: 11 TLEGRLGYSFQDKALLMQALTHASALNAGGAARGSYQRLEFLGDRVLGLAVATMLHRHFP 70 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EGEL+ R N +V ETC+ +A ELDL +R+S + T++ AD+ E++IA Sbjct: 71 LADEGELARRLNHMVKRETCADIALELDLGEAMRISQSEAQTGGRRKTALLADICEAVIA 130 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG A FV + W+ R L RDAKT LQEWA +K P Y+VT R GPD Sbjct: 131 AIYLDGGFPAAEDFVRRLWEPRMLAWSGPLRDAKTTLQEWAQSKGLPAPGYQVTTREGPD 190 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 H P F V V +SG AP +G SKR AEQ AA VL+REG+WT Sbjct: 191 HAPVFVVAVTVSGYAPGEGRGGSKRIAEQNAAEAVLRREGVWT 233 >gi|304392070|ref|ZP_07374012.1| ribonuclease III [Ahrensia sp. R2A130] gi|303296299|gb|EFL90657.1| ribonuclease III [Ahrensia sp. R2A130] Length = 244 Score = 214 bits (545), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 114/227 (50%), Positives = 154/227 (67%), Gaps = 2/227 (0%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLL 59 S R + LE+ IGY FA+ L++ALTH+S + ++ YERLEFLGDR+LG+ I+ +L Sbjct: 6 STNRIAELEELIGYTFASHDRLKRALTHASATRKPGDNSHYERLEFLGDRVLGVCIAEML 65 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F +A EGELSVR N+LVS +TC+ +A E+ L +FI +D++ M S++ADVV Sbjct: 66 FETFPTAPEGELSVRLNALVSGKTCAAIADEIGLHAFITTGNDVKHVTGKRMRSVRADVV 125 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ES+IAA+YLDGG+E A F+ +YW R ++G RD+KT LQEWAH G TP Y + Sbjct: 126 ESVIAAIYLDGGLEPARDFITRYWAGRLHETGAGIRDSKTALQEWAHTHSGETPVYTLVE 185 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 ++GPDHDP F + V I G++ G SKRAAEQ AA VL REG+W Sbjct: 186 KTGPDHDPLFKISVAIHGVSGGNGAGRSKRAAEQAAARAVLLREGVW 232 >gi|110633304|ref|YP_673512.1| ribonuclease III [Mesorhizobium sp. BNC1] gi|110284288|gb|ABG62347.1| RNAse III [Chelativorans sp. BNC1] Length = 238 Score = 213 bits (541), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 106/219 (48%), Positives = 143/219 (65%), Gaps = 1/219 (0%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 + +RIG +F + LLE+ALTHSS + Y+RLEFLGDR+LGL ++ +L+ + A E Sbjct: 15 VNERIGLSFRDAELLERALTHSS-ARGKGGDYQRLEFLGDRVLGLAVAEMLYEAYPDASE 73 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS+R NSLV+AET +++ EL L + IR SDL+ +++ADV+E+LIA +YL Sbjct: 74 GELSLRLNSLVNAETLAEITEELGLDTLIRTGSDLKALAMRKQVNLRADVLEALIAVIYL 133 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G++ A F+ +W +R+ G R DAKT LQEWAH TP+Y + R GPDHDP Sbjct: 134 QDGLDGARQFIRTHWTERSTAEGAARADAKTALQEWAHRVSSATPDYVIESREGPDHDPV 193 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 FT VV I+G +G SKR AEQ AA EVL RE +WT Sbjct: 194 FTAVVRIAGFQEGRGRGRSKREAEQAAATEVLIREAVWT 232 >gi|118587961|ref|ZP_01545371.1| Ribonuclease III [Stappia aggregata IAM 12614] gi|118439583|gb|EAV46214.1| Ribonuclease III [Stappia aggregata IAM 12614] Length = 236 Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 108/223 (48%), Positives = 143/223 (64%), Gaps = 3/223 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 S L+ + Y F + LL ALTH+S S + SY+RLEFLGDR+LGL+I+++L HF Sbjct: 12 SALKNALQYEFRDLELLRVALTHASALPPSETVAGSYQRLEFLGDRVLGLVIASMLHKHF 71 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGEL+ RFN +V ETC+++A+EL + +R+ + T++ AD+ ES+I Sbjct: 72 PRADEGELARRFNHMVKRETCAEIAQELGVGDAMRIGLAEAQTGGRKKTALLADICESVI 131 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AA+YLDGG E A +F+ + W+ R L RDAKT LQEWA +K TP Y VT R GP Sbjct: 132 AAIYLDGGFEAAESFITRLWEPRMLSWSGPLRDAKTTLQEWAQSKSLPTPRYDVTSRDGP 191 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 DH P FTV V + GL P +G SKR AEQ AA VL+REG+W Sbjct: 192 DHAPNFTVSVTVQGLPPGEGKGGSKRIAEQNAAEAVLRREGVW 234 >gi|218663008|ref|ZP_03518938.1| ribonuclease III [Rhizobium etli IE4771] Length = 206 Score = 208 bits (529), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 98/159 (61%), Positives = 127/159 (79%) Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 + ELSVR N LVSAETC+ VA EL+L +IR +D++K M +++ADVVESLIAA+Y Sbjct: 41 KAELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVESLIAAIY 100 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 LDGG+EVA F+ +YW+ RA+++ +RDAKTELQEW+HAKFGVTP Y+V RSGPDHDP Sbjct: 101 LDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDERSGPDHDP 160 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 RF V VE++G+ P G++ SKRAAEQVAA ++L+REGIW Sbjct: 161 RFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 199 >gi|307946585|ref|ZP_07661920.1| ribonuclease III [Roseibium sp. TrichSKD4] gi|307770249|gb|EFO29475.1| ribonuclease III [Roseibium sp. TrichSKD4] Length = 235 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 103/222 (46%), Positives = 143/222 (64%), Gaps = 3/222 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L +R+ Y F + L+ KALTH+S +SY+RLEFLGDR+LGL+++T+L +F Sbjct: 13 LSERLHYTFKDEKLIRKALTHASALEPGEGDDQSYQRLEFLGDRVLGLVVATMLHKNFPK 72 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EGEL+ RFN +V ETC+++A+EL+L +R+ + T++ AD+ E++IAA Sbjct: 73 ADEGELARRFNHMVKRETCAEIAQELNLGDAMRIGHSEAQTGGRKKTALLADICEAVIAA 132 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +YLDGG + A F+ ++WK+R L RDAKT LQEWA +K TP Y+V R GPDH Sbjct: 133 IYLDGGFDAATAFIQRFWKKRMLSWTGPLRDAKTTLQEWAQSKSLPTPFYEVISRDGPDH 192 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 P F V V + GL +G SKR AEQ AA VL+REG+W Sbjct: 193 APIFVVAVAVKGLENGEGKGGSKRLAEQNAAEAVLRREGVWN 234 >gi|254469250|ref|ZP_05082655.1| ribonuclease III [Pseudovibrio sp. JE062] gi|211961085|gb|EEA96280.1| ribonuclease III [Pseudovibrio sp. JE062] Length = 235 Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 103/224 (45%), Positives = 146/224 (65%), Gaps = 3/224 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+RIGY F N+ LL +ALTH+S ++ + +SY+RLEFLGDR+LGL I+T+L +F Sbjct: 11 AALEERIGYKFTNKELLVRALTHASALPVAKASLQSYQRLEFLGDRVLGLAIATMLEENF 70 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGEL+ R N LV ETC++V++ + + +RV T+I AD+ ESLI Sbjct: 71 PKADEGELARRLNQLVKRETCAEVSKVIGIGQHMRVGEAEAHTGGRTKTAILADMCESLI 130 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AA+YLD G + A F+ +Y+ +R + RDAKT LQEWA +K TP+Y+ RSGP Sbjct: 131 AAIYLDSGFDEAENFIKRYFAERMVSYTGPLRDAKTTLQEWAQSKGRPTPQYETISRSGP 190 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 DH P F + V + G+ P + + SKR AEQ AA +L+REG+W+ Sbjct: 191 DHAPIFKIRVNVEGVDPGEAVGSSKRIAEQSAAENILRREGVWS 234 >gi|161621443|ref|NP_108012.2| ribonuclease III [Mesorhizobium loti MAFF303099] Length = 237 Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 112/221 (50%), Positives = 145/221 (65%), Gaps = 1/221 (0%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFDSA 66 L +R G+AFA+R L++ALTH+S + + YER EFLGDR+LGL+++ +L F A Sbjct: 15 ALVERTGHAFADRQRLQRALTHASARGANAGTDYERFEFLGDRVLGLVVADMLLAAFPDA 74 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS+R N+LV+AE S++A + L IR SD+R +++AD +ESLIA L Sbjct: 75 AEGELSLRLNALVNAEALSEIAEHIGLPDLIRAGSDVRGLEGRKRVNLRADALESLIAVL 134 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG+E A F+ KYW+ R+ SG RRDAKTELQEWAH P Y++ R GPDHD Sbjct: 135 YLDGGLEAARAFIHKYWQPRSQASGAARRDAKTELQEWAHQAASAVPAYQIDSREGPDHD 194 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 P FTV V + PA G SKR AEQ AAA +L REG+W Sbjct: 195 PLFTVSVRVGAFQPATGSGRSKREAEQAAAAALLLREGVWN 235 >gi|81776564|sp|Q985A6|RNC_RHILO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|14027203|dbj|BAB54157.1| ribonuclease III [Mesorhizobium loti MAFF303099] Length = 221 Score = 205 bits (521), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 111/218 (50%), Positives = 144/218 (66%), Gaps = 1/218 (0%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFDSAKEG 69 +R G+AFA+R L++ALTH+S + + YER EFLGDR+LGL+++ +L F A EG Sbjct: 2 ERTGHAFADRQRLQRALTHASARGANAGTDYERFEFLGDRVLGLVVADMLLAAFPDAAEG 61 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 ELS+R N+LV+AE S++A + L IR SD+R +++AD +ESLIA LYLD Sbjct: 62 ELSLRLNALVNAEALSEIAEHIGLPDLIRAGSDVRGLEGRKRVNLRADALESLIAVLYLD 121 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 GG+E A F+ KYW+ R+ SG RRDAKTELQEWAH P Y++ R GPDHDP F Sbjct: 122 GGLEAARAFIHKYWQPRSQASGAARRDAKTELQEWAHQAASAVPAYQIDSREGPDHDPLF 181 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 TV V + PA G SKR AEQ AAA +L REG+W Sbjct: 182 TVSVRVGAFQPATGSGRSKREAEQAAAAALLLREGVWN 219 >gi|39935763|ref|NP_948039.1| ribonuclease III [Rhodopseudomonas palustris CGA009] gi|192291350|ref|YP_001991955.1| ribonuclease III [Rhodopseudomonas palustris TIE-1] gi|81562548|sp|Q6N6C1|RNC_RHOPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|39649616|emb|CAE28138.1| putative ribonuclease III [Rhodopseudomonas palustris CGA009] gi|192285099|gb|ACF01480.1| Ribonuclease III [Rhodopseudomonas palustris TIE-1] Length = 272 Score = 204 bits (519), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 105/221 (47%), Positives = 142/221 (64%), Gaps = 2/221 (0%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+R+G++FA+ SLL A TH S S + +SY+RLEFLGD +LGL++S +L+ F A Sbjct: 47 IEQRLGHSFADPSLLTTAFTHVSALKSARRTDSYQRLEFLGDHVLGLIVSDMLYRAFPDA 106 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS R LV ETC+ VAR LDL I++ + S+ D+ E++I A+ Sbjct: 107 DEGELSKRLADLVRKETCADVARSLDLVEGIKLGTVGAGAGAKLRKSVLGDICEAVIGAI 166 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG E A FV + W +R K + RD KT LQEWA A+ TP Y+ R+GP HD Sbjct: 167 YLDGGYEAASDFVRRNWTERMRKPARSLRDPKTVLQEWAQARGLPTPVYREVERTGPHHD 226 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 P+F V V + GL PA+G+ SKRAAE+VAA+ +L REG+ T Sbjct: 227 PQFRVAVILPGLEPAEGLGGSKRAAEKVAASAMLAREGVGT 267 >gi|316934144|ref|YP_004109126.1| ribonuclease III [Rhodopseudomonas palustris DX-1] gi|315601858|gb|ADU44393.1| ribonuclease III [Rhodopseudomonas palustris DX-1] Length = 272 Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 105/219 (47%), Positives = 142/219 (64%), Gaps = 2/219 (0%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+RIG++FA+ SLL ALTH S S + +SY+RLEFLGD +LGL++S +L+ F A Sbjct: 47 IEQRIGHSFADPSLLTTALTHVSALKSARRTDSYQRLEFLGDHVLGLIVSDMLYRAFPDA 106 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS R LV E+C+ VAR LDL+ I++ + S+ D+ E++I A+ Sbjct: 107 DEGELSKRLADLVRKESCADVARHLDLSEGIKIGTVGAGAGAKLRKSVLGDICEAVIGAV 166 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG E A FV W +R K + RD KT LQEWA A+ TP Y+ R+GP HD Sbjct: 167 YLDGGYEAASNFVRSNWTERMHKPVRSLRDPKTVLQEWAQARGLPTPVYREVERTGPHHD 226 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P+F V V + GL PA+G+ SKRAAE+VAA+ +L REG+ Sbjct: 227 PQFRVAVVLPGLEPAEGVGGSKRAAEKVAASAMLAREGV 265 >gi|114570121|ref|YP_756801.1| ribonuclease III [Maricaulis maris MCS10] gi|114340583|gb|ABI65863.1| RNAse III [Maricaulis maris MCS10] Length = 228 Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 109/220 (49%), Positives = 139/220 (63%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+RIGY F ++ L+E+ALTH S + + +YERLEFLGDR+LGL+ + LF FD A Sbjct: 8 LEQRIGYVFTDKRLIERALTHGSFAEGRKTIPTYERLEFLGDRVLGLMTAEALFKSFDKA 67 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ R NS+V ETC+ VAR +DL + +R+ K TSI D ESL+AA+ Sbjct: 68 DEGALAPRLNSMVRKETCADVARAVDLGAALRIGKSEEKGGGRNKTSILGDACESLMAAI 127 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLDGG F D +W R ALK+ DAK+ LQEWA P Y++T RSGPD Sbjct: 128 YLDGGRAAVQAFFDHHWGPRIEALKAKPL--DAKSALQEWAAKTGRGVPRYELTERSGPD 185 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FTV V ++ LAPA G SK+ AE+ AA E+LKREG Sbjct: 186 HRPVFTVQVTVTPLAPAVGEGGSKQVAERAAAEELLKREG 225 >gi|91977122|ref|YP_569781.1| ribonuclease III [Rhodopseudomonas palustris BisB5] gi|91683578|gb|ABE39880.1| RNAse III [Rhodopseudomonas palustris BisB5] Length = 271 Score = 202 bits (513), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 104/222 (46%), Positives = 141/222 (63%), Gaps = 3/222 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+RIG+ FA+ SLL ALTH S S + +SY+RLEFLGD +LGL++S +L+ F + Sbjct: 45 IEQRIGHTFADPSLLNTALTHVSALKSARNRADSYQRLEFLGDHVLGLVVSDMLYRAFPN 104 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EGELS R LV ETC+ +AR LDL I++ + S+ D+ E++I A Sbjct: 105 ADEGELSKRLADLVRKETCADIARSLDLLDGIKLGTVGAGAGARLRKSVLGDICEAVIGA 164 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 ++LDGG A FV + W +R K + RD KT LQEWA K TP Y+ R+GP H Sbjct: 165 VFLDGGYPAAADFVQRNWTERMRKPARSLRDPKTVLQEWAQGKGLPTPVYREVERTGPHH 224 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 DP+F V V + GL PA+G+ SKRAAE+VAA+ +L REG+ T Sbjct: 225 DPQFRVAVSLPGLEPAEGVGGSKRAAEKVAASVMLAREGVST 266 >gi|260462323|ref|ZP_05810531.1| ribonuclease III [Mesorhizobium opportunistum WSM2075] gi|259031817|gb|EEW33085.1| ribonuclease III [Mesorhizobium opportunistum WSM2075] Length = 237 Score = 201 bits (512), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 112/221 (50%), Positives = 142/221 (64%), Gaps = 1/221 (0%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSA 66 L +R G+AFA+R L++ALTH+S + YER EFLGDR+LGL+++ +L F A Sbjct: 15 ALVERTGHAFADRQRLQRALTHASARGANAGIDYERFEFLGDRVLGLVVADMLLAAFPDA 74 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS+R N+LV+AE S +A + L IR SD+R +++AD +ESLIA L Sbjct: 75 AEGELSLRLNALVNAEALSDIAEHIGLPDLIRAGSDIRGLDGRKRVNLRADALESLIAVL 134 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG+E A F+ KYW R+ SG RRDAKTELQEWAH P Y++ R GPDHD Sbjct: 135 YLDGGLEAARAFIHKYWLPRSQASGAARRDAKTELQEWAHQAASAVPAYQIDSREGPDHD 194 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 P FTV V + PA G SKR AEQ AAA +L REG+W Sbjct: 195 PLFTVSVRVGTFQPAVGSGRSKREAEQAAAAALLLREGVWN 235 >gi|86749730|ref|YP_486226.1| ribonuclease III [Rhodopseudomonas palustris HaA2] gi|86572758|gb|ABD07315.1| RNAse III [Rhodopseudomonas palustris HaA2] Length = 271 Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 103/220 (46%), Positives = 141/220 (64%), Gaps = 3/220 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+RIG++FA+ SLL ALTH S S + +SY+RLEFLGD +LGL++S +L+ F + Sbjct: 45 IEQRIGHSFADPSLLNTALTHVSALKSARNRADSYQRLEFLGDHVLGLVVSDMLYRAFPN 104 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EGELS R LV ETC+ VAR LDL +++ + S+ D+ E++I A Sbjct: 105 ADEGELSKRLADLVRKETCADVARSLDLDEGVKLGTVGAGAGARLRKSVLGDICEAVIGA 164 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 ++LDGG A FV + W +R K + RD KT LQEWA K TP Y+ R+GP H Sbjct: 165 VFLDGGYPAAAEFVQRNWTERMRKPTRSLRDPKTVLQEWAQGKGLPTPVYREVERTGPHH 224 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 DP+F V V + GL PA+G+ SKRAAE+VAA+ +L REG+ Sbjct: 225 DPQFRVAVSLPGLDPAEGVGGSKRAAEKVAASVMLAREGV 264 >gi|254503847|ref|ZP_05115998.1| ribonuclease III [Labrenzia alexandrii DFL-11] gi|222439918|gb|EEE46597.1| ribonuclease III [Labrenzia alexandrii DFL-11] Length = 235 Score = 198 bits (503), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 102/223 (45%), Positives = 141/223 (63%), Gaps = 3/223 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L+ + Y F + LL +LTH+S + + SY+RLEFLGDR+LGL+++++L +HF Sbjct: 11 AALKAALAYEFKDLELLRVSLTHASALDPADTVAGSYQRLEFLGDRVLGLVVASMLHHHF 70 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGEL+ RFN +V ETC+++A EL + +R+ + T++ AD+ E++I Sbjct: 71 PKADEGELARRFNHMVKRETCAEIASELGVGDAMRIGQAEAQTGGRKKTALLADICEAII 130 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AA+YLDGG E A FV + W+ R L RDAKT LQEWA +K TP Y+V R GP Sbjct: 131 AAIYLDGGFEAADEFVRRLWEPRMLSWTGPLRDAKTTLQEWAQSKSLPTPHYEVASREGP 190 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 DH P FTV V + GL +G SKR AEQ AA VL+REG+W Sbjct: 191 DHAPSFTVSVIVQGLKNGEGKGGSKRIAEQHAAEAVLRREGVW 233 >gi|90424139|ref|YP_532509.1| ribonuclease III [Rhodopseudomonas palustris BisB18] gi|90106153|gb|ABD88190.1| RNAse III [Rhodopseudomonas palustris BisB18] Length = 272 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 103/217 (47%), Positives = 140/217 (64%), Gaps = 3/217 (1%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 RIG+AFA+ +LL A TH S S + +SY+RLEFLGD +LGL++S +L+ F +A E Sbjct: 49 RIGHAFADPALLATAFTHVSALKSARNRADSYQRLEFLGDHVLGLVVSDMLYRAFPNADE 108 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS R LV E C+ VAR LDL I++ + S+ D+ E++I A++L Sbjct: 109 GELSKRLADLVRKEACADVARSLDLLDGIKLGTVGAGAGARLRKSVLGDICEAVIGAIFL 168 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG A +FV + W +R K + RDAKT LQEWA K TP Y+ R+GP HDP+ Sbjct: 169 DGGYPAAESFVQRNWLERMRKPVRPLRDAKTILQEWAQGKGLPTPVYREVERTGPHHDPQ 228 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 F V V++ GLAPA+G+ SKRAAE+VAA+ +L REG+ Sbjct: 229 FRVAVDLPGLAPAEGIGGSKRAAEKVAASVMLAREGV 265 >gi|30179749|sp|O69161|RNC_BRAJA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 250 Score = 195 bits (495), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 100/222 (45%), Positives = 144/222 (64%), Gaps = 3/222 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 + LE RIG++FA+ +LL + +TH S S + +SY+RLEFLGD +LGL++S +L++ F Sbjct: 23 AALEARIGHSFADPNLLMQGITHVSALKSGRKRGDSYQRLEFLGDHVLGLVVSDMLYHAF 82 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +A EGELS R LV E+C+ VA+ L L I++ S S+ D+ E++I Sbjct: 83 PNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSADARLRKSVLGDICEAVI 142 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++LDGG A FV + W +R K + RD KT LQEWA K TP Y+ R+GP Sbjct: 143 GAIFLDGGHAAAAEFVKRNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 202 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 HDP+F V V++ GLAPA+G+ SKRAAE+VAA+ +++REG+ Sbjct: 203 HHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAASVMIEREGV 244 >gi|27380172|ref|NP_771701.1| RNase III [Bradyrhizobium japonicum USDA 110] gi|27353326|dbj|BAC50326.1| RNase III [Bradyrhizobium japonicum USDA 110] Length = 273 Score = 195 bits (495), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 100/222 (45%), Positives = 144/222 (64%), Gaps = 3/222 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 + LE RIG++FA+ +LL + +TH S S + +SY+RLEFLGD +LGL++S +L++ F Sbjct: 46 AALEARIGHSFADPNLLMQGITHVSALKSGRKRGDSYQRLEFLGDHVLGLVVSDMLYHAF 105 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +A EGELS R LV E+C+ VA+ L L I++ S S+ D+ E++I Sbjct: 106 PNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSADARLRKSVLGDICEAVI 165 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++LDGG A FV + W +R K + RD KT LQEWA K TP Y+ R+GP Sbjct: 166 GAIFLDGGHAAAAEFVKRNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 225 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 HDP+F V V++ GLAPA+G+ SKRAAE+VAA+ +++REG+ Sbjct: 226 HHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAASVMIEREGV 267 >gi|146341377|ref|YP_001206425.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS278] gi|146194183|emb|CAL78204.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS278] Length = 357 Score = 194 bits (493), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 100/217 (46%), Positives = 137/217 (63%), Gaps = 3/217 (1%) Query: 12 RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 RIG+ FA+ SLL A TH S S +SY+RLEFLGD +LGL++S +L+ F SA E Sbjct: 134 RIGHRFADPSLLSTAFTHVSALKSSKKRGDSYQRLEFLGDHVLGLIVSDMLYRAFPSADE 193 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS R LV E+C+ VA+ L L I++ + S+ DV E++I A++L Sbjct: 194 GELSKRLADLVRKESCADVAKSLGLLDDIKLGAVGAGAGARLRKSVLGDVCEAVIGAIFL 253 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG A FV++ W +R K + RD KT LQEWA K TP Y+ R+GP HDP+ Sbjct: 254 DGGYTAAAGFVERNWTERMRKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQ 313 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 F V V++ GL PA+G+ SKRAAE+VAA+ +++REG+ Sbjct: 314 FRVAVDLPGLEPAEGVGGSKRAAEKVAASVMIEREGV 350 >gi|115525028|ref|YP_781939.1| ribonuclease III [Rhodopseudomonas palustris BisA53] gi|115518975|gb|ABJ06959.1| RNAse III [Rhodopseudomonas palustris BisA53] Length = 268 Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 101/217 (46%), Positives = 133/217 (61%), Gaps = 3/217 (1%) Query: 12 RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 RIG+ F + LL A TH S SHS +SY+R+EFLGD +LGL++S +L+ F A E Sbjct: 49 RIGHDFKDAGLLATAFTHVSALKSSHSRADSYQRMEFLGDHVLGLVVSDMLYRAFPKADE 108 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS R LV ETC+ VA L L I++ + S+ D+ E++I A+YL Sbjct: 109 GELSKRLADLVRKETCADVALALGLLDGIKLGTVGAGAGARLRKSVLGDICEAVIGAVYL 168 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG A FV+ W +R K + RD KT LQEWA K TP Y+ R+GPDHDP+ Sbjct: 169 DGGYPAAAKFVEANWTERMRKPTRSLRDPKTVLQEWAQGKGLPTPAYREVERTGPDHDPK 228 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 F V VE+ GL PA+G+ SKRAAE+ AA+ +L REG+ Sbjct: 229 FRVRVELPGLEPAEGIGGSKRAAEKEAASAMLAREGV 265 >gi|148256032|ref|YP_001240617.1| ribonuclease III [Bradyrhizobium sp. BTAi1] gi|146408205|gb|ABQ36711.1| RNAse III [Bradyrhizobium sp. BTAi1] Length = 368 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 99/217 (45%), Positives = 137/217 (63%), Gaps = 3/217 (1%) Query: 12 RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 RIG+ FA+ SLL A+TH S S +SY+RLEFLGD +LGL++S +L+ F SA E Sbjct: 145 RIGHHFADPSLLSTAVTHVSALKSSKKRGDSYQRLEFLGDHVLGLIVSDMLYRSFPSADE 204 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS R LV E+C+ VA+ L L I++ + S+ DV E++I A++L Sbjct: 205 GELSKRLADLVRKESCADVAKSLGLLDDIKLGAVGAGAGARLRKSVLGDVCEAVIGAIFL 264 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG A FV++ W +R K + RD KT LQEWA K TP Y+ R+GP HDP+ Sbjct: 265 DGGYAAAAGFVERNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQ 324 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 F V V++ GL A+G+ SKRAAE+VAA+ +++REG+ Sbjct: 325 FRVAVDLPGLESAEGVGGSKRAAEKVAASVMIEREGV 361 >gi|3176883|gb|AAD02939.1| RNase III [Bradyrhizobium japonicum] Length = 231 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 98/225 (43%), Positives = 142/225 (63%), Gaps = 3/225 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60 +R L + G+ FA+ +LL + +TH S S + +SY+RLEFLGD +LGL++S +L+ Sbjct: 1 MRTRRLRRASGHTFADPNLLMQGITHVSALKSGRKRGDSYQRLEFLGDHVLGLVVSDMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F +A EGELS R LV E+C+ VA+ L L I++ S S+ D+ E Sbjct: 61 HAFPNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSADARLRKSVLGDICE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++I A++LDGG A FV + W +R K + RD KT LQEWA K TP Y+ R Sbjct: 121 AVIGAIFLDGGHAAAAEFVKRNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVER 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +GP HDP+F V V++ GLAPA+G+ SKRAAE+VAA+ +++REG+ Sbjct: 181 TGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAASVMIEREGV 225 >gi|296444865|ref|ZP_06886827.1| ribonuclease III [Methylosinus trichosporium OB3b] gi|296257533|gb|EFH04598.1| ribonuclease III [Methylosinus trichosporium OB3b] Length = 233 Score = 187 bits (475), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 102/217 (47%), Positives = 132/217 (60%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE +G+ F NR LLE ALTH S S + ESYERLEFLGDR+LG++++ LL+ F + E Sbjct: 12 LEASVGHGFVNRGLLEHALTHVSGSTARTESYERLEFLGDRVLGVVVAHLLYETFPAESE 71 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS R LV E+C++VA + F+R+ + +I D+ E++I A+YL Sbjct: 72 GELSRRLADLVRKESCAEVAERWGVGPFMRLGDGEAQTGGRKKRAILGDMCEAIIGAVYL 131 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG A V + + R G+ RDAKT LQEWA A+ TP Y++T RSGPDH P Sbjct: 132 DGGAAAAEAVVREAFGARMQTQGRRLRDAKTSLQEWAQARRLPTPCYRMTSRSGPDHAPF 191 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 F V V + G PA+G SKR AEQ AA L REGI Sbjct: 192 FKVEVVVEGFVPAEGGGASKRVAEQSAAQAFLDREGI 228 >gi|154247804|ref|YP_001418762.1| ribonuclease III [Xanthobacter autotrophicus Py2] gi|154161889|gb|ABS69105.1| Ribonuclease III [Xanthobacter autotrophicus Py2] Length = 236 Score = 182 bits (462), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 100/223 (44%), Positives = 140/223 (62%), Gaps = 3/223 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63 +++E+RIGY F +RS+LE AL+H S SY+R+EFLGD +LG ++S +L+ F Sbjct: 9 ASVEERIGYRFRDRSILELALSHISAVKGEAPRLRSYQRMEFLGDHVLGSVVSHMLYLAF 68 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +EGELS R LV E C++VA+++DL FIR+ + +I ADV E ++ Sbjct: 69 PEGEEGELSRRLAELVREEACAEVAQDMDLGPFIRLGPGESQSGAHKRRAILADVAEGVV 128 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AA++LDGG E A V+++W+ R + RDAKT LQEWA A+ P Y+ RSGP Sbjct: 129 AAVFLDGGYEAAHQVVERFWRPRLETPRRPLRDAKTVLQEWAQARGLPPPSYREVTRSGP 188 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 DH PRFTV V++ GLA Q SK+ A++ AAA L REG+W Sbjct: 189 DHAPRFTVAVDLPGLASEQADGASKQNAQKAAAAAFLVREGVW 231 >gi|182679393|ref|YP_001833539.1| ribonuclease III [Beijerinckia indica subsp. indica ATCC 9039] gi|182635276|gb|ACB96050.1| Ribonuclease III [Beijerinckia indica subsp. indica ATCC 9039] Length = 235 Score = 181 bits (458), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 100/218 (45%), Positives = 135/218 (61%), Gaps = 2/218 (0%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE RIG+ F LL ALTH S++ + +E+Y+RLEFLGDR+LGL+I+ +L+ F A+ Sbjct: 11 LETRIGHRFVEADLLTTALTHVSVTVGARRETYQRLEFLGDRVLGLVIAEMLYATFPEAE 70 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EGELS R LV E+C++VA E + F+R+ R+ + + +I DV ES+I A++ Sbjct: 71 EGELSRRLADLVRKESCAEVALEWGVGPFVRLGESERQ-IGTTKKAILGDVCESIIGAVF 129 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 LD G VA + K + R + RDAKT LQEWA ++ TP Y+ R GPDH P Sbjct: 130 LDAGYTVAQQVIVKAFDARMRSPRRPLRDAKTVLQEWAQSRGHPTPLYREICRCGPDHAP 189 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 FT+ V I G A AQ SKR AEQ AAA ++REGI Sbjct: 190 EFTISVCIPGYADAQAKGPSKRLAEQAAAAHFIEREGI 227 >gi|304321233|ref|YP_003854876.1| ribonuclease III [Parvularcula bermudensis HTCC2503] gi|303300135|gb|ADM09734.1| ribonuclease III [Parvularcula bermudensis HTCC2503] Length = 238 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 95/213 (44%), Positives = 126/213 (59%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 G+ F +RSLL +ALTH+S+S + ERLEFLGDR+LGLL + LL+ F EGEL+ Sbjct: 22 GHRFDDRSLLARALTHASVSQDGLKDLERLEFLGDRVLGLLAADLLWRRFPDMAEGELAP 81 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 R N+LV ETC+ AR L +R+S+ + +I D ESL+ A+Y+DGG+ Sbjct: 82 RLNALVRRETCADAARHWKLGEAVRMSAGEERTGGRNKDAILGDACESLLGAIYIDGGLG 141 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 A T + YW R + DAKT LQEWA K TP Y+ R GPDH P FTV V Sbjct: 142 AAKTAFETYWTPRVEELIDDHADAKTALQEWAQEKGLGTPSYRDIDRDGPDHAPIFTVAV 201 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 + GL A+ +KR+A+ AA +L REG+W Sbjct: 202 VVQGLESAEARGPNKRSAQMQAARSILVREGVW 234 >gi|300023749|ref|YP_003756360.1| ribonuclease III [Hyphomicrobium denitrificans ATCC 51888] gi|299525570|gb|ADJ24039.1| ribonuclease III [Hyphomicrobium denitrificans ATCC 51888] Length = 235 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 95/222 (42%), Positives = 134/222 (60%), Gaps = 2/222 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNH 62 ++ LE ++G+ F + LLE+ALTH+S+ + ERLEF+GDR+LGL I+ +L Sbjct: 6 KFKELETKLGHRFKDPGLLERALTHASVRGGKIARFDNERLEFIGDRVLGLAIAEILNQQ 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + A EGEL+ R+N LV E C++VAR + L + + +S T+I AD E+L Sbjct: 66 YPEASEGELARRYNRLVRGEACAKVARNIGLGAHLILSESEADSGGRDKTTILADAAEAL 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + A+++D G E A V K W++++ + DAK+ LQEWA + P+Y V R G Sbjct: 126 LGAVFIDVGFEKARAVVRKLWQEQSEPVPEVAVDAKSALQEWAQGQGLALPKYTVVSRKG 185 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH PRFT V I+G APAQG SKR AEQ AA +L REG Sbjct: 186 PDHAPRFTAEVIIAGRAPAQGEGASKRIAEQAAATALLTREG 227 >gi|85716284|ref|ZP_01047258.1| ribonuclease III [Nitrobacter sp. Nb-311A] gi|85696956|gb|EAQ34840.1| ribonuclease III [Nitrobacter sp. Nb-311A] Length = 266 Score = 179 bits (453), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 102/222 (45%), Positives = 138/222 (62%), Gaps = 3/222 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +E+R+G+ FA+ SLL A TH S S +SY+RLEFLGD +LGL+IS +L+ F Sbjct: 44 AAIEQRLGHKFADISLLTTAFTHVSALKSSRGRSDSYQRLEFLGDHVLGLVISDMLYRAF 103 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS R LV ETC VAR LDL +++ + S+ D+ E++I Sbjct: 104 PQADEGELSKRLADLVRKETCIDVARSLDLQEGVKLGAVGAGAGARLRRSVLGDICEAVI 163 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG VA FV++ W +R K + RD KT LQEWA K TP Y+ R+GP Sbjct: 164 GAVYLDGGYAVAAAFVERNWLERMRKPVRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 223 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 HDPRF V VE+ GL ++G+ SKRAAE+ AA+ ++ REG+ Sbjct: 224 HHDPRFRVAVELPGLEVSEGIGGSKRAAEKAAASAMIAREGV 265 >gi|217977175|ref|YP_002361322.1| Ribonuclease III [Methylocella silvestris BL2] gi|254807894|sp|B8EK13|RNC_METSB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|217502551|gb|ACK49960.1| Ribonuclease III [Methylocella silvestris BL2] Length = 235 Score = 178 bits (451), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 97/219 (44%), Positives = 135/219 (61%), Gaps = 1/219 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE RIG+ F+ L+E ALTH S + + SY+RLEFLGDR+LG++++ +L+ F A Sbjct: 8 SALEARIGHRFSAADLIEAALTHVSAAQGKRVSYQRLEFLGDRVLGVVVANMLYGAFPDA 67 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS R LV E+C++VA E + +++RV +++ S +I DV ES+I A+ Sbjct: 68 DEGELSRRLADLVRKESCAEVALEWGVEAYVRVGESEKQN-ASVNRAILGDVCESIIGAV 126 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +LDGG A V + ++ R + RD KT LQEWA A+ P Y+ T R+GPDH Sbjct: 127 FLDGGFAPAQRVVTQAFEPRMRSPRRPLRDPKTTLQEWAQARGLPPPSYRETARTGPDHA 186 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P FT+ VEI+G A+ +KR AEQ AAA L RE I Sbjct: 187 PEFTISVEIAGFQQAEARGFAKRLAEQAAAAAFLTREKI 225 >gi|323137544|ref|ZP_08072621.1| ribonuclease III [Methylocystis sp. ATCC 49242] gi|322397170|gb|EFX99694.1| ribonuclease III [Methylocystis sp. ATCC 49242] Length = 234 Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 98/219 (44%), Positives = 135/219 (61%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LE+ +G+ FA++SLL ALTH S S ESYERLEFLGDR+LGL ++ +L+ F Sbjct: 9 AALEESVGHRFADQSLLRWALTHVSASSQRPESYERLEFLGDRVLGLAVAHMLYEAFPGE 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS R +LV ETC++VA + ++R+ + +I DV E++I A+ Sbjct: 69 SEGELSRRLAALVRKETCAEVAEIWGVGPYMRLGEGEAQTGGRKKRAILGDVCEAIIGAV 128 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +LDGG + AG V + + L++G+ RDAKT LQEWA A+ P Y++ RSGPDH Sbjct: 129 FLDGGADAAGRVVRAGFGPKMLEAGRDLRDAKTALQEWAQARRLPPPRYRLIARSGPDHA 188 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P F + V+I G A G SKR AEQ AAA + REG+ Sbjct: 189 PSFEMAVDIEGFESAGGAGASKRVAEQAAAAAFMAREGV 227 >gi|92117774|ref|YP_577503.1| ribonuclease III [Nitrobacter hamburgensis X14] gi|91800668|gb|ABE63043.1| RNAse III [Nitrobacter hamburgensis X14] Length = 266 Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 99/222 (44%), Positives = 137/222 (61%), Gaps = 3/222 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +E+R+G+ FA+ SLL A TH S S +SY+RLEFLGD +LGL++S +L+ F Sbjct: 44 AAIEQRLGHKFADMSLLTTAFTHVSALKSSRGRSDSYQRLEFLGDHVLGLVVSDMLYRAF 103 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS R LV ETC VA+ LDL I++ + S+ D+ E++I Sbjct: 104 PKADEGELSKRLAELVRKETCIDVAKSLDLQDGIKLGAVGAGAGARLRRSVLGDICEAVI 163 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG A FV++ W +R K + RD KT LQEWA + TP Y+ R+GP Sbjct: 164 GAVYLDGGYAAAAAFVERNWLERMRKPVRPLRDPKTVLQEWAQGQGLPTPVYREVERTGP 223 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 HDPRF V VE+ GL ++G+ SKRAAE+ AA+ ++ REG+ Sbjct: 224 HHDPRFRVAVELPGLEASEGIGGSKRAAEKAAASAMIAREGV 265 >gi|319784504|ref|YP_004143980.1| ribonuclease III [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170392|gb|ADV13930.1| ribonuclease III [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 251 Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 97/218 (44%), Positives = 136/218 (62%), Gaps = 1/218 (0%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 ++ + GY F + LLE ALTHSS + + +RLEFLGDR+LGL+++ +LF F A E Sbjct: 15 VKAKTGYVFKDIRLLETALTHSSAVKAATNN-QRLEFLGDRVLGLVVADMLFEKFPDAPE 73 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GE++ RFN+LV A TCS++ E+ L +R S L+ + AD VE+LIAA+Y+ Sbjct: 74 GEIAPRFNALVDARTCSEIGIEMQLEDLVRADSALKMRSRGSGGNYLADAVEALIAAVYV 133 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGGIE A FV +YW+ R+ + K++LQEW + PEY + R GPDH P Sbjct: 134 DGGIEAARRFVLRYWEPRSHTVIAKPLNPKSDLQEWIAKTSDIRPEYVIDKREGPDHQPV 193 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 FTV +++ G AP G S+RAAE+ AA+ L REG+W Sbjct: 194 FTVSLQVRGFAPISGTGGSRRAAEEAAASAFLVREGVW 231 >gi|163744855|ref|ZP_02152215.1| ribonuclease III [Oceanibulbus indolifex HEL-45] gi|161381673|gb|EDQ06082.1| ribonuclease III [Oceanibulbus indolifex HEL-45] Length = 228 Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 96/216 (44%), Positives = 133/216 (61%), Gaps = 6/216 (2%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E RIG++FA LL +A+TH+S+S + ++ +RLEFLGDR+LGL+++ L A EG Sbjct: 11 EARIGHSFAKPELLVRAVTHASMSSANRDDNQRLEFLGDRVLGLVMAEALLALDPGATEG 70 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAAL 126 +L+ RFN+LV ETC+ VARE+DL +++ R ++ S QA D +E++IAA+ Sbjct: 71 QLAPRFNALVRKETCADVAREIDLGKVLKLG---RSEMISGGRRKQALLGDAIEAVIAAV 127 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLD G E A V + W R + RDAKT LQEWA A+ + P Y T RSGPDH Sbjct: 128 YLDSGFEAAKGLVLRLWGDRLKTVKEDARDAKTALQEWAQARGLMPPRYVQTDRSGPDHA 187 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P FT+ + A A SKRAAEQ AA +L++ Sbjct: 188 PVFTITARLDNGAEAAATAPSKRAAEQAAATTLLRQ 223 >gi|83855027|ref|ZP_00948557.1| Ribonuclease III [Sulfitobacter sp. NAS-14.1] gi|83941550|ref|ZP_00954012.1| Ribonuclease III [Sulfitobacter sp. EE-36] gi|83842870|gb|EAP82037.1| Ribonuclease III [Sulfitobacter sp. NAS-14.1] gi|83847370|gb|EAP85245.1| Ribonuclease III [Sulfitobacter sp. EE-36] Length = 228 Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 93/214 (43%), Positives = 132/214 (61%), Gaps = 6/214 (2%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E RIGY FA LL +A+TH+S+S + ++ +RLEFLGDR+LGL+++ L +A EG Sbjct: 11 EGRIGYHFAKPELLNRAVTHASMSSANRDDNQRLEFLGDRVLGLVMAEALLKLDPAATEG 70 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAAL 126 +L+ RFN+LV E C++VARE+D+ + +++ R ++ S QA D +E++IAA+ Sbjct: 71 QLAPRFNALVRKEACAEVAREIDMGAVLKLG---RSEMLSGGRRKQALLGDAIEAIIAAV 127 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG + A + + W R ++ + RDAKT LQEWA A+ P Y T R GPDH Sbjct: 128 YLDGGFDEAKALILRLWGDRVMQVKQDARDAKTALQEWAQARGLPPPAYVQTDRQGPDHA 187 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P FT+ I A A SKR AEQ AA +L Sbjct: 188 PVFTITARIENGASAVASAPSKRQAEQAAAKTLL 221 >gi|83858196|ref|ZP_00951718.1| ribonuclease III [Oceanicaulis alexandrii HTCC2633] gi|83853019|gb|EAP90871.1| ribonuclease III [Oceanicaulis alexandrii HTCC2633] Length = 228 Score = 175 bits (443), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 95/221 (42%), Positives = 133/221 (60%), Gaps = 2/221 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 R E RI Y F +R LLE+ALTH+S S S ERLEFLGDR+LGL+ S L+ Sbjct: 4 RIKDFEARINYRFKDRELLERALTHASHGDGRSRAASNERLEFLGDRVLGLMASQRLYET 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F + +EG L+ R N++V+ C++ AR DL +R+S+ + SI AD E++ Sbjct: 64 FPNLEEGGLAQRLNAVVNKSACARAARRCDLGEGLRLSAAEERLGGREKESIIADACEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I ALYLDGG++ A F +W + + +DAK++LQEWA K P Y+ R G Sbjct: 124 IGALYLDGGLDAAWAFFTTFWADEIDQLTRRPKDAKSQLQEWAAQKGYGVPVYETVARKG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH P F + V + G+APA+G SK+ A++ AA+E+LKRE Sbjct: 184 PDHRPVFEIEVRLDGVAPARGEGGSKQDAQRAAASEMLKRE 224 >gi|154253314|ref|YP_001414138.1| ribonuclease III [Parvibaculum lavamentivorans DS-1] gi|154157264|gb|ABS64481.1| Ribonuclease III [Parvibaculum lavamentivorans DS-1] Length = 226 Score = 175 bits (443), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 92/220 (41%), Positives = 129/220 (58%), Gaps = 3/220 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L+ R+ + F + LL +ALTH S + +Y+R EFLGDR+LGL+I+ L F A Sbjct: 6 AALQVRLAHDFKDLGLLSRALTHPSADGA---NYQRFEFLGDRVLGLVIADWLLRDFPQA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL++R+N+LV E C++VA + L + I + + K +I AD E++IAAL Sbjct: 63 DEGELAIRYNALVRKEACAEVAERIGLGACITMGAGEEKAGGRRKPAILADACEAVIAAL 122 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y DGG++ A F++ W KS + +DAKT LQEWA A+ P Y + RSGPDH Sbjct: 123 YTDGGLQAARRFIETEWAYLVEKSSEIPQDAKTALQEWAQARGQGVPTYTLVGRSGPDHA 182 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 P FTV V P + SKR AEQ AA +L+ G+W Sbjct: 183 PEFTVEVSAGKAKPLRAQGNSKRQAEQTAARALLEALGVW 222 >gi|75676109|ref|YP_318530.1| ribonuclease III [Nitrobacter winogradskyi Nb-255] gi|90101631|sp|Q3SRB3|RNC_NITWN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|74420979|gb|ABA05178.1| RNAse III [Nitrobacter winogradskyi Nb-255] Length = 266 Score = 174 bits (442), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 99/222 (44%), Positives = 138/222 (62%), Gaps = 3/222 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 + +E+R+G+ FA+ SLL A TH S S + +SY+RLEFLGD +LGL++S +L+ F Sbjct: 44 AAIEQRLGHTFADISLLTTAFTHVSALKSSRGRCDSYQRLEFLGDHVLGLVVSDMLYRAF 103 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS R LV ETC VA+ LDL +++ + S+ D+ E++I Sbjct: 104 PKADEGELSKRLADLVRKETCIDVAKSLDLQEGVKLGAVGAGAGARLRRSVLGDICEAVI 163 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG A FV++ W +R K + RD KT LQEWA K TP Y+ R+GP Sbjct: 164 GAVYLDGGYAAAAAFVERNWLERMRKPVRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 223 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 HDPRF V VE+ GL ++G+ SKRAAE+ AA+ ++ REG+ Sbjct: 224 HHDPRFRVAVELPGLESSEGIGGSKRAAEKAAASAMIVREGV 265 >gi|170749855|ref|YP_001756115.1| ribonuclease III [Methylobacterium radiotolerans JCM 2831] gi|170656377|gb|ACB25432.1| Ribonuclease III [Methylobacterium radiotolerans JCM 2831] Length = 259 Score = 174 bits (441), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 90/219 (41%), Positives = 131/219 (59%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LE+RIG++F ++ LL +ALTH+S + SY+RLEFLGDR+LGL ++ L+ F A Sbjct: 29 TALEERIGHSFGDQDLLTRALTHTSKASGRGGSYQRLEFLGDRVLGLAVADRLYGAFPEA 88 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS R +LV ETC+ VA ++ + + +I ADV E+++ A+ Sbjct: 89 DEGDLSRRLAALVRRETCAAVAASWEVGPHLILGQGEVMGGGRRNQTILADVCEAILGAI 148 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLD G + A V+ +++ + RDAK+ LQEWA + P Y V R+GPDH Sbjct: 149 YLDAGFDAARAVVETHFRPGEPTAAARGRDAKSALQEWAMGRSLPIPTYAVVERTGPDHA 208 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PRF + V++ GL P G SKR AEQ AA +++REGI Sbjct: 209 PRFRIAVQVEGLEPGLGDGTSKRIAEQAAARALMEREGI 247 >gi|254463926|ref|ZP_05077337.1| ribonuclease III [Rhodobacterales bacterium Y4I] gi|206684834|gb|EDZ45316.1| ribonuclease III [Rhodobacterales bacterium Y4I] Length = 225 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 93/218 (42%), Positives = 134/218 (61%), Gaps = 6/218 (2%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E+RIG+ FA LL++A+TH+S+S S ++ +RLEFLGDR+LGL+++T L H +A EG Sbjct: 11 EERIGHKFARPELLQRAVTHASVSSSNRKDNQRLEFLGDRVLGLVMATALLEHDKTATEG 70 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAAL 126 +L+ RFN+LV E C+ VA+E+DL + +++ R ++ S QA D +E++IAA+ Sbjct: 71 QLAPRFNALVRKEACADVAKEIDLGAVLKLG---RSEMMSGGRRKQALLGDAMEAVIAAV 127 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y D G + A + + W R + RDAKT LQEWA A+ P Y RSGPDH Sbjct: 128 YKDAGFDAAAEMILRLWGTRIHQVETDARDAKTSLQEWAQARGQQVPIYVEVSRSGPDHA 187 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P FT+ + AQ SKR AEQ AA +L++ G Sbjct: 188 PVFTIAARLQDGTEAQATAGSKRQAEQAAAKALLEQLG 225 >gi|299135102|ref|ZP_07028293.1| ribonuclease III [Afipia sp. 1NLS2] gi|298590079|gb|EFI50283.1| ribonuclease III [Afipia sp. 1NLS2] Length = 282 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 100/220 (45%), Positives = 136/220 (61%), Gaps = 3/220 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+RIG+ F N +LL+ ALTH S S S +SY+RLEFLGD +LGL++S +L+ F Sbjct: 57 IEQRIGHTFKNPALLKTALTHVSALKSSQSRTDSYQRLEFLGDHVLGLIVSDMLYGAFPK 116 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EGE+S R LV E C VA+ L L I++ + SI D+ E++I A Sbjct: 117 ADEGEMSKRLADLVRKEACVDVAKSLGLHENIKLGTVGAGVGARLRNSIVGDICEAVIGA 176 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 ++LDGG A FV + W +R + + RD KT LQEWA K TP Y+ R+GP H Sbjct: 177 IFLDGGYGAAEQFVLRNWTERMRRPVRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHH 236 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 DPRF V V++ GLA A+G+ SKRAAE+ AA+ +L REG+ Sbjct: 237 DPRFRVAVDLPGLASAEGIGSSKRAAEKAAASALLSREGV 276 >gi|209884975|ref|YP_002288832.1| ribonuclease III [Oligotropha carboxidovorans OM5] gi|209873171|gb|ACI92967.1| ribonuclease III [Oligotropha carboxidovorans OM5] Length = 288 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 99/220 (45%), Positives = 136/220 (61%), Gaps = 3/220 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+RIG+ F N +LL+ ALTH S S + +SY+RLEFLGD +LGL++S +L+ F Sbjct: 63 IEQRIGHTFKNPNLLKTALTHVSALKPSQNRTDSYQRLEFLGDHVLGLIVSDMLYGAFPK 122 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EGE+S R LV E C VA+ L L I++ + SI D+ E++I A Sbjct: 123 ADEGEMSKRLADLVRKEACVDVAKSLGLHENIKLGTVGAGVGARLRNSIVGDICEAVIGA 182 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 ++LDGG + A FV W +R + + RD KT LQEWA K TP Y+ R+GP H Sbjct: 183 IFLDGGYDAAEQFVLSNWTERMRRPVRPLRDPKTILQEWAQGKGLPTPVYREVERTGPHH 242 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 DPRF V V++ GLA A+G+ SKRAAE+ AA+ +L REG+ Sbjct: 243 DPRFRVAVDLPGLASAEGIGSSKRAAEKAAASALLNREGV 282 >gi|56698030|ref|YP_168401.1| ribonuclease III [Ruegeria pomeroyi DSS-3] gi|81349082|sp|Q5LNK5|RNC_SILPO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56679767|gb|AAV96433.1| ribonuclease III [Ruegeria pomeroyi DSS-3] Length = 225 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 90/211 (42%), Positives = 129/211 (61%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+GY+F LL +ALTH SIS S ++ +RLEFLGDR+LGL+++T L A EG Sbjct: 11 EARLGYSFERPELLVRALTHGSISSSTRQDNQRLEFLGDRVLGLVMATALLEADKDATEG 70 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +L+ RFN+LV ETC++VARE DL + +++ ++ D +E++IAA+Y D Sbjct: 71 QLAPRFNALVRKETCAEVAREADLGAVLKLGRSEMMSGGRRKLALLGDAMEAVIAAVYRD 130 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 GG A + + W R + RDAKT LQEWA A+ P Y++ RSGPDH P F Sbjct: 131 GGFAAAEAVILRLWGARVHQVEADARDAKTALQEWAQARGQTPPRYELVKRSGPDHAPVF 190 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 T++ E++ A+ +KR AEQ AA ++L Sbjct: 191 TILAELADGRRAEATAGAKRQAEQAAARKLL 221 >gi|170744647|ref|YP_001773302.1| ribonuclease III [Methylobacterium sp. 4-46] gi|168198921|gb|ACA20868.1| Ribonuclease III [Methylobacterium sp. 4-46] Length = 244 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 91/220 (41%), Positives = 132/220 (60%), Gaps = 1/220 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE RIG+AF ++ LL +ALTH S + + +ESY+RLEFLGDR+LGL ++ L A Sbjct: 17 SALEGRIGHAFDDKDLLARALTHVS-AGAGEESYQRLEFLGDRVLGLAVAEGLLRALPGA 75 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS R + LV E+C+ VA+ ++ +R+ + +I ADV E+++ A+ Sbjct: 76 DEGDLSRRLSGLVRRESCAAVAQAWEVGPHLRLGAGEVHGGGRRNPAILADVCEAILGAI 135 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +LD G A +D+ + G RD K+ LQEWA TP Y V R+GPDH Sbjct: 136 FLDAGYAAAKAVIDRAFAAAEEAEGPRGRDPKSALQEWAQGLGLPTPTYAVVERAGPDHA 195 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 P F + ++G+AP+ G+ SKR AEQ AA +L+REG+W Sbjct: 196 PIFRIEARVAGVAPSLGVGGSKRLAEQEAARLLLRREGVW 235 >gi|260425711|ref|ZP_05779691.1| ribonuclease III [Citreicella sp. SE45] gi|260423651|gb|EEX16901.1| ribonuclease III [Citreicella sp. SE45] Length = 227 Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 90/216 (41%), Positives = 130/216 (60%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LE+R+G+ FA+ L +ALTHSS+S +E +RLEFLGDR+LGL+++ L + A Sbjct: 8 AALEQRLGHRFADPERLRRALTHSSMSAPGREDNQRLEFLGDRVLGLVMAEALLSEDRGA 67 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ RFN+LV E C++VARE+DL + +++ ++ D +E++IAA+ Sbjct: 68 SEGQLAPRFNALVRKEACAEVAREIDLGAALKLGRSEMMSGGRRKMALLGDAMEAVIAAV 127 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLD G A V + W R + + RDAKT LQEWA A+ V P Y R GPDH Sbjct: 128 YLDAGFGTAKALVLRLWGDRIARVEEDARDAKTSLQEWAQARGMVPPSYTEVAREGPDHA 187 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P FT+ + A A+ SKR AEQ AA+ +L + Sbjct: 188 PVFTIEARLENGAAARATAGSKRKAEQQAASGLLDK 223 >gi|83951643|ref|ZP_00960375.1| ribonuclease III [Roseovarius nubinhibens ISM] gi|83836649|gb|EAP75946.1| ribonuclease III [Roseovarius nubinhibens ISM] Length = 227 Score = 171 bits (433), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 95/212 (44%), Positives = 127/212 (59%), Gaps = 6/212 (2%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 R+G+ F +LL +ALTHSS+S ++ +RLEFLGDR+LGL++S L H A EG L Sbjct: 13 RLGHEFQTPALLVQALTHSSMSTPNRDDNQRLEFLGDRVLGLVMSEALLEHDRKAAEGTL 72 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAALYL 128 + RFN+LV ETC+ VAR++DL + +++ R ++ S QA D +E++IAA+YL Sbjct: 73 APRFNALVRKETCADVARQIDLGAVLKLG---RSEMLSGGRRKQALLGDAMEAVIAAVYL 129 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 D G E A T V W R + RDAKT LQEWA A+ P Y+ RSGPDH P Sbjct: 130 DAGFETARTVVLALWGDRITRVEADARDAKTALQEWAQARGLAPPRYEEVARSGPDHAPE 189 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 FT+V + A SKR AEQ AA +L Sbjct: 190 FTIVARLETGEEAASKAGSKRQAEQAAAKALL 221 >gi|298291621|ref|YP_003693560.1| ribonuclease III [Starkeya novella DSM 506] gi|296928132|gb|ADH88941.1| ribonuclease III [Starkeya novella DSM 506] Length = 243 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 86/195 (44%), Positives = 121/195 (62%), Gaps = 6/195 (3%) Query: 9 LEKRIGYAFANRSLLEKALTH-SSI-----SHSYQESYERLEFLGDRILGLLISTLLFNH 62 LE +G+ FA+R+ L ALTH SS+ S + SY+RLEFLGD +LGL++S +L+ Sbjct: 21 LEAALGHRFASRAHLRLALTHISSVTGAQGSQARVRSYQRLEFLGDHVLGLVVSDMLYRA 80 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + +A+EGELS R LV E C++VAR +DL +IR+ + +I ADV E++ Sbjct: 81 YPNAEEGELSRRLADLVCEEACAEVARAMDLGPYIRLGPGEDRTGGRERPAILADVAEAV 140 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +AA+YLD G E A V+K+W+ R G RD KT LQEWA + P Y++ RSG Sbjct: 141 LAAVYLDAGFEAAEAMVEKFWRPRLSTPGSSARDPKTALQEWAQGRGLPPPHYRLVERSG 200 Query: 183 PDHDPRFTVVVEISG 197 PDH+P F + VE+ G Sbjct: 201 PDHNPEFRIAVELPG 215 >gi|329850746|ref|ZP_08265591.1| ribonuclease III [Asticcacaulis biprosthecum C19] gi|328841061|gb|EGF90632.1| ribonuclease III [Asticcacaulis biprosthecum C19] Length = 236 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 92/219 (42%), Positives = 133/219 (60%), Gaps = 3/219 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65 T++ R+GY F ++ LLE ALTH+S++ + ERLEFLGDR+LGL+I+ L ++F Sbjct: 15 TVQDRLGYRFRDKQLLEVALTHASVAEGARRIADNERLEFLGDRVLGLMIAEALMDNFPE 74 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EGELS RF++LVS E C+ +AR+L L +R+++ K +I D E+L+AA Sbjct: 75 AEEGELSRRFHALVSREACADIARQLSLGEAVRLAAGETKSGGRSNPTILGDACEALMAA 134 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +Y+DGG + W+Q L SG R + K+ LQEWA A P Y + R GPD Sbjct: 135 VYVDGGYDAVVKSFAPLWQQLLLDSGNASRSNPKSFLQEWAVANAKRPPAYNLIERRGPD 194 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H P FT+ V I GL P S++ AE+ AA +++RE Sbjct: 195 HAPVFTMEVVIDGLQPQSATGKSRQEAEKTAALALIERE 233 >gi|294011699|ref|YP_003545159.1| ribonuclease III [Sphingobium japonicum UT26S] gi|292675029|dbj|BAI96547.1| ribonuclease III [Sphingobium japonicum UT26S] Length = 237 Score = 168 bits (426), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 92/214 (42%), Positives = 127/214 (59%), Gaps = 3/214 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ IG+A +R+ +ALTH S ++ +YERLEFLGDRILGLLI+ +++ F E Sbjct: 24 LKALIGHAPKDRTAFHQALTHGS---AHAVNYERLEFLGDRILGLLIAEWVYDRFSGEPE 80 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS RFN+LVS ETC++VAR + + + + R D + ++ DV+E+LI ALYL Sbjct: 81 GKLSRRFNALVSGETCAEVARGAGVPAHLILGKQARDDGAADSDNVLGDVMEALIGALYL 140 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +GG+E A T V + W R + K+ LQEWA A PEY +T RSGP H + Sbjct: 141 EGGLEEARTLVRRLWADRVDTQASAPKHPKSALQEWAAANKRKPPEYAMTDRSGPHHALK 200 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 FTV V I G A SK+ AE AA +L + Sbjct: 201 FTVTVSIKGAGEASATGGSKQEAETAAAKALLDK 234 >gi|254418789|ref|ZP_05032513.1| ribonuclease III [Brevundimonas sp. BAL3] gi|196184966|gb|EDX79942.1| ribonuclease III [Brevundimonas sp. BAL3] Length = 236 Score = 168 bits (425), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 93/236 (39%), Positives = 140/236 (59%), Gaps = 12/236 (5%) Query: 1 MSALR---YSTLEKRIGYAFANRSLLEKALTHSSIS-------HSYQESYERLEFLGDRI 50 M+ LR + L+ RIG+AF + +LLE+ALTH+S+ H +++ ERLEFLGDR+ Sbjct: 1 MANLRAEAVAALQTRIGHAFRDAALLERALTHASVGEGAPVGVHGPRDN-ERLEFLGDRV 59 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 LGLL++ L + +A EG+LS ++LV C++V L + + +R+S K Sbjct: 60 LGLLVAEKLSRDYPTANEGQLSSSLHALVDKTACARVGEALGVGAALRLSPGETKTGGRR 119 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKF 169 + AD VE+++AA+YLDGG+E A F DK W + + + + K+ LQEWA AK Sbjct: 120 KAGVIADAVEAILAAVYLDGGLEAARAFFDKAWAEEFSAPPSRTVTNPKSALQEWAQAKG 179 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P Y+V R+G DH P FT+ V + G+ P S++ AE+ AA +LKREG+ Sbjct: 180 RPLPTYRVADRTGSDHAPTFTIEVSVEGVEPLTAQGRSRQEAEKAAATALLKREGV 235 >gi|163738238|ref|ZP_02145654.1| 4'-phosphopantetheinyl transferase [Phaeobacter gallaeciensis BS107] gi|161388854|gb|EDQ13207.1| 4'-phosphopantetheinyl transferase [Phaeobacter gallaeciensis BS107] Length = 228 Score = 168 bits (425), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 86/213 (40%), Positives = 130/213 (61%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E RIGY+F+ +LL +ALTH+S+S ++ +RLEFLGDR+LGL+++T L + +A EG Sbjct: 11 ETRIGYSFSQPALLVRALTHASVSSPNRQDNQRLEFLGDRVLGLVMATALLDTDKAATEG 70 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +L+ RFN+LV ETC+ VAR++DL + +++ ++ D +E++IAA+Y D Sbjct: 71 QLAPRFNALVRKETCADVARDIDLGAVLKLGRSETMSGGRRKLALLGDAMEAVIAAVYKD 130 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 GG + A + + W R + RD KT LQE+A A+ P Y + R+GPDH P F Sbjct: 131 GGFDAAQELILRLWGNRIGRVEADARDPKTTLQEFAQARGEQPPAYVLVERTGPDHQPEF 190 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 T+ V++ + SKR AEQ AA +L R Sbjct: 191 TISVQLQDGTEGRATAGSKRQAEQAAAKFLLAR 223 >gi|94497606|ref|ZP_01304175.1| ribonuclease III [Sphingomonas sp. SKA58] gi|94423023|gb|EAT08055.1| ribonuclease III [Sphingomonas sp. SKA58] Length = 227 Score = 167 bits (424), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 93/214 (43%), Positives = 124/214 (57%), Gaps = 3/214 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ IG A NR+ E+ALTH S + +YERLEFLGDRILGLLI +F+ F E Sbjct: 14 LKDLIGRAPHNRATFEQALTHGS---AKPVNYERLEFLGDRILGLLIGEWVFDRFADEPE 70 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS R+N+LVS ETC+ +AR + + + R D + ++ DV+E+LI ALYL Sbjct: 71 GKLSRRYNALVSGETCADIARTAGVPKHLILGKQARDDGAADSDNVLGDVMEALIGALYL 130 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +GG++ A V + W R R K+ LQEWA A PEY++T RSGP H R Sbjct: 131 EGGLDEARALVRRLWGNRVDTQTSAPRHPKSALQEWAAANRRKPPEYQMTDRSGPQHALR 190 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 FTV V I G A SK+ AE AA +L++ Sbjct: 191 FTVAVSIKGAGEASATGASKQEAETAAAKALLEK 224 >gi|163740176|ref|ZP_02147570.1| ribonuclease III [Phaeobacter gallaeciensis 2.10] gi|161386034|gb|EDQ10409.1| ribonuclease III [Phaeobacter gallaeciensis 2.10] Length = 228 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 86/213 (40%), Positives = 129/213 (60%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E RIGY+F+ +LL +ALTH+S+S ++ +RLEFLGDR+LGL+++T L + +A EG Sbjct: 11 ETRIGYSFSQPALLVRALTHASVSSPNRQDNQRLEFLGDRVLGLVMATALLDTDKAATEG 70 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +L+ RFN+LV ETC+ VAR++DL + +++ ++ D +E++IAA+Y D Sbjct: 71 QLAPRFNALVRKETCADVARDIDLGAVLKLGRSETMSGGRRKLALLGDAMEAVIAAVYKD 130 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 GG + A + + W R + RD KT LQE+A A+ P Y + R GPDH P F Sbjct: 131 GGFDAAQELILRLWGNRIGRVEADARDPKTTLQEFAQARGEQPPAYVLVERKGPDHQPEF 190 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 T+ V++ + SKR AEQ AA +L R Sbjct: 191 TISVQLQDGTEGRATAGSKRQAEQAAAKFLLAR 223 >gi|148553136|ref|YP_001260718.1| RNAse III [Sphingomonas wittichii RW1] gi|148498326|gb|ABQ66580.1| RNAse III [Sphingomonas wittichii RW1] Length = 234 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/210 (42%), Positives = 123/210 (58%), Gaps = 3/210 (1%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +G+ + +L E+ALTH S ++ YERLEFLGDR+LGL+ LF F EG+LS Sbjct: 26 LGHEPRDLALFERALTHGSYGPNH---YERLEFLGDRVLGLVAGAWLFELFPDEPEGKLS 82 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 R N++VS ETC+ V R + +A+ +++ R D ++ DVVE+LI ALYL+GG+ Sbjct: 83 RRLNAIVSRETCADVGRAIGVATHMKLGKQARDDGAVQSDNVLGDVVEALIGALYLEGGL 142 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 + A FV + W RA + + K+ LQEWA A P Y + RSGP H PRFTV Sbjct: 143 DAAQAFVRRAWDDRATGQAQAPKHPKSALQEWAAAHRCKPPVYTMGNRSGPHHAPRFTVT 202 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V I G A A SK+ AE AA +L++ Sbjct: 203 VAIPGRAEASAEGSSKQEAETAAAKALLEK 232 >gi|254474637|ref|ZP_05088023.1| ribonuclease III [Ruegeria sp. R11] gi|214028880|gb|EEB69715.1| ribonuclease III [Ruegeria sp. R11] Length = 222 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/213 (40%), Positives = 126/213 (59%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E RIGY F +LL +ALTH+S+S ++ +RLEFLGDR+LGL+++T L A EG Sbjct: 5 EARIGYQFTEPALLVRALTHASVSSPNRKDNQRLEFLGDRVLGLVMATALLETDKDASEG 64 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +L+ RFN+LV ETC+ VAR++D+ S +++ ++ D +E++IAA+Y D Sbjct: 65 QLAPRFNALVRKETCADVARQIDVGSVLKLGRSETLSGGRRKMALLGDAMEAVIAAVYKD 124 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 GG + A + + W R + RDAKT LQE+A A+ P Y + R GPDH P F Sbjct: 125 GGFDAAQELILRLWGDRIGRVEADARDAKTTLQEFAQARGEQPPTYVLVERKGPDHQPEF 184 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 T+ V++ + SKR AEQ AA +L R Sbjct: 185 TISVQLQDGTEGRATAGSKRQAEQAAAKSLLAR 217 >gi|126733741|ref|ZP_01749488.1| ribonuclease III [Roseobacter sp. CCS2] gi|126716607|gb|EBA13471.1| ribonuclease III [Roseobacter sp. CCS2] Length = 226 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 85/216 (39%), Positives = 129/216 (59%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +R+G++F +L +A+THSSI +++ +RLEFLGDR+LGL+++ L SA Sbjct: 8 TAFSQRLGHSFDKPEILIRAVTHSSIVSPHRDDNQRLEFLGDRVLGLVMAEALLKADPSA 67 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ R+N+LV E C++VAR++DL + +++ K ++ AD +E++IAA+ Sbjct: 68 PEGLLAPRYNALVRREACAEVARQIDLGAVLKLGRSEMKSGGRRKEALLADAMEAVIAAV 127 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y DGG + A + + W R RDAKT LQEWA A+ V P+Y R+GPDH Sbjct: 128 YQDGGFDAARAAILRLWGDRIHNVAADARDAKTALQEWAQARGEVPPQYVEVARTGPDHQ 187 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P FT+ ++ Q SKR AEQ AA +LK+ Sbjct: 188 PVFTIEARLASGPSEQATAGSKRQAEQAAATALLKK 223 >gi|114765524|ref|ZP_01444632.1| Ribonuclease III [Pelagibaca bermudensis HTCC2601] gi|114542117|gb|EAU45149.1| Ribonuclease III [Roseovarius sp. HTCC2601] Length = 227 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 121/201 (60%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+R+G+ F LL +ALTHSS+S +E +RLEFLGDR+LGL+++ L +A E Sbjct: 10 LEERLGHRFDRPELLRRALTHSSMSAPGREDNQRLEFLGDRVLGLVMAEALLADDRNASE 69 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ R+N+LV ETC+ VARE+DL + +++ ++ D +E++IAA+YL Sbjct: 70 GQLAPRYNALVRKETCADVAREVDLGAALKLGRSEMMSGGRRKMALLGDAMEAVIAAVYL 129 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 D G E A V + W R + + RDAKT LQEWA A+ P Y T RSGPDH P Sbjct: 130 DAGFEAAKDLVRRLWGDRVTRVDEDARDAKTSLQEWAQARGMPPPAYVETARSGPDHAPV 189 Query: 189 FTVVVEISGLAPAQGMDCSKR 209 FT+ +S AQ +KR Sbjct: 190 FTIEARLSSGETAQATAGAKR 210 >gi|254486436|ref|ZP_05099641.1| ribonuclease III [Roseobacter sp. GAI101] gi|214043305|gb|EEB83943.1| ribonuclease III [Roseobacter sp. GAI101] Length = 228 Score = 165 bits (417), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 87/208 (41%), Positives = 126/208 (60%), Gaps = 6/208 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E RIGY F+ LL +A+TH+S+S + ++ +RLEFLGDR+LGL+++ L A E Sbjct: 10 FEGRIGYKFSKPELLIRAVTHASMSSANRDDNQRLEFLGDRVLGLVMAEALLMLDPKATE 69 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAA 125 G+L+ RFN+LV E C+ VARE+D+ + +++ R ++ S QA D +E++IAA Sbjct: 70 GQLAPRFNALVRKEACADVAREIDMGAVLKLG---RSEMLSGGRRKQALLGDAIEAIIAA 126 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +Y+DGG + A + + W R + RDAKT LQEWA A+ P Y T R GPDH Sbjct: 127 VYMDGGFDAARDLIIRLWGDRVQTVKQDARDAKTALQEWAQARGFPPPSYVQTDRQGPDH 186 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 P FT+ ++ A A + SKR AEQ Sbjct: 187 APVFTITAKVQNGASAVAVAPSKRQAEQ 214 >gi|89053013|ref|YP_508464.1| ribonuclease III [Jannaschia sp. CCS1] gi|122499604|sp|Q28V23|RNC_JANSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|88862562|gb|ABD53439.1| RNAse III [Jannaschia sp. CCS1] Length = 227 Score = 165 bits (417), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 89/209 (42%), Positives = 124/209 (59%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 R+GY F + +LL +ALTHSS+S + +RLEFLGDR+LGL+++ + AKEG L Sbjct: 13 RLGYVFEDPALLARALTHSSLSSPTRGDNQRLEFLGDRVLGLVMAEAVLAADTDAKEGTL 72 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + RFN+LV E C+ VAR++DL + +R+ ++ D +E++IAA+YLDGG Sbjct: 73 APRFNALVRKEACADVARQIDLGAAMRLGKSEMSAGGRRRMALLGDAMEAVIAAVYLDGG 132 Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 A V + W +R + RDAKT LQEWA A+ P Y RSGPDH P F V Sbjct: 133 FASARDLVLRLWSERVQSVEEDARDAKTALQEWAQARGMAPPTYTEVARSGPDHAPVFRV 192 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V +S A+ +KR AEQ AA ++L Sbjct: 193 RVTLSSGENAEAQAKAKRQAEQQAAKDLL 221 >gi|254439178|ref|ZP_05052672.1| ribonuclease III [Octadecabacter antarcticus 307] gi|198254624|gb|EDY78938.1| ribonuclease III [Octadecabacter antarcticus 307] Length = 229 Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 91/213 (42%), Positives = 124/213 (58%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 + RIG+ FA L +A+THSS+S ++ +RLEFLGDR+LGL++S L +A EG Sbjct: 11 QDRIGHTFAKPDQLIRAVTHSSMSSPNRDDNQRLEFLGDRVLGLVMSEALLQADVNAPEG 70 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 L+ RFN+LV ETC+ VARE+DL + +++ ++ AD +E++IAA+Y+D Sbjct: 71 LLAPRFNALVRKETCADVAREIDLGAVLKLGRSEMLTGGRRKEALLADAMEAVIAAVYID 130 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 G +VA V W R K RD KT LQEWA + P Y T RSGPDH P F Sbjct: 131 AGFDVARERVVALWGDRITNVEKDARDPKTALQEWAQGQGEPPPSYIETARSGPDHAPIF 190 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 T+ V + G SKR AEQ AA +L+R Sbjct: 191 TIEVRLQSGPTDIGQAPSKRQAEQAAAKSLLER 223 >gi|158423628|ref|YP_001524920.1| ribonuclease III [Azorhizobium caulinodans ORS 571] gi|226735365|sp|A8I3B5|RNC_AZOC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|158330517|dbj|BAF88002.1| ribonuclease III [Azorhizobium caulinodans ORS 571] Length = 235 Score = 164 bits (415), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 96/225 (42%), Positives = 138/225 (61%), Gaps = 3/225 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62 ++ LE R+G++FA+RS L ALTH S SY+RLEFLGD +LG ++S +L+ Sbjct: 7 FAALEARLGHSFADRSHLVLALTHISSVKGQAVRVRSYQRLEFLGDHVLGSVVSHMLYAA 66 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EGELS R LV E C++VA+++ L ++R+ + +I ADV E++ Sbjct: 67 FPKAEEGELSRRLAELVREEACAEVAQDMGLGPYLRLGPGEAQSGARQRRAILADVAEAV 126 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +AA+YLDGG E A V+++W+ R + RD KT LQEWA A+ P Y+ RSG Sbjct: 127 VAAVYLDGGYEAASALVERFWRGRLEAPRRPLRDPKTVLQEWAQARGLPPPVYRDVERSG 186 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 PDH PRF V V++ GL A+ SK+ A++ AA+ L REG+ T Sbjct: 187 PDHAPRFRVAVDLPGLECAEAEGGSKQTAQKAAASAFLAREGVVT 231 >gi|218530503|ref|YP_002421319.1| ribonuclease III [Methylobacterium chloromethanicum CM4] gi|218522806|gb|ACK83391.1| Ribonuclease III [Methylobacterium chloromethanicum CM4] Length = 256 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 126/223 (56%), Gaps = 6/223 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 + LE RIG+ FA+ +LL ALTH +S + Q SY+RLEFLGDR+LGL ++ L+ Sbjct: 25 AVLEARIGHVFADPTLLPLALTH--VSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKA 82 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A+EGELS R LV ETC+ VA ++ + + + +I ADV E++ Sbjct: 83 LPGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIRTGGRRNQTILADVCEAI 142 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + A++LD G E V + ++ + RDAK+ LQEWA A+ P Y+V RSG Sbjct: 143 LGAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSG 202 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PDH P F + + G+ P G SKR AEQ AA VL REGI Sbjct: 203 PDHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245 >gi|254293934|ref|YP_003059957.1| ribonuclease III [Hirschia baltica ATCC 49814] gi|254042465|gb|ACT59260.1| ribonuclease III [Hirschia baltica ATCC 49814] Length = 255 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 85/220 (38%), Positives = 132/220 (60%), Gaps = 2/220 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +T+++ G F + SLL++A TH+S + S ERLEFLGDR+LGL+ ++ L F+ Sbjct: 33 ATIQEIAGIKFKDVSLLDRAFTHTSAVPGEAADWSNERLEFLGDRVLGLVAASQLITRFE 92 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ R N+LVS +TC+++A E++L ++ + + + S+ A+V E+LI Sbjct: 93 KEREGGLAPRLNALVSRDTCAKIAAEINLGQYLILDASESSAGGTTKPSLLANVTEALIG 152 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLD G+ + F+ KYWK+ RD K+ LQEWA P Y+ R+GPD Sbjct: 153 AIYLDAGLAASERFIVKYWKEYFKTLTDVPRDPKSALQEWAQGDGRPAPNYENIDRTGPD 212 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FTV V + G+ PA+G SK+ A++ AA+ +L G Sbjct: 213 HAPVFTVEVRVEGVRPAKGEGSSKQEAQRAAASAMLNNVG 252 >gi|163851697|ref|YP_001639740.1| ribonuclease III [Methylobacterium extorquens PA1] gi|163663302|gb|ABY30669.1| Ribonuclease III [Methylobacterium extorquens PA1] Length = 256 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 126/223 (56%), Gaps = 6/223 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 + LE RIG+ FA+ +LL ALTH +S + Q SY+RLEFLGDR+LGL ++ L+ Sbjct: 25 AVLEARIGHVFADPTLLPLALTH--VSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKA 82 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A+EGELS R LV ETC+ VA ++ + + + +I ADV E++ Sbjct: 83 LPGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAI 142 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + A++LD G E V + ++ + RDAK+ LQEWA A+ P Y+V RSG Sbjct: 143 LGAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSG 202 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PDH P F + + G+ P G SKR AEQ AA VL REGI Sbjct: 203 PDHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245 >gi|240138862|ref|YP_002963337.1| ribonuclease III [Methylobacterium extorquens AM1] gi|240008834|gb|ACS40060.1| ribonuclease III [Methylobacterium extorquens AM1] Length = 256 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 126/223 (56%), Gaps = 6/223 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 + LE RIG+ FA+ +LL ALTH +S + Q SY+RLEFLGDR+LGL ++ L+ Sbjct: 25 AVLEARIGHVFADPTLLPLALTH--VSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKA 82 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A+EGELS R LV ETC+ VA ++ + + + +I ADV E++ Sbjct: 83 LPGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAI 142 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + A++LD G E V + ++ + RDAK+ LQEWA A+ P Y+V RSG Sbjct: 143 LGAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSG 202 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PDH P F + + G+ P G SKR AEQ AA VL REGI Sbjct: 203 PDHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245 >gi|254561469|ref|YP_003068564.1| ribonuclease III [Methylobacterium extorquens DM4] gi|254268747|emb|CAX24708.1| ribonuclease III [Methylobacterium extorquens DM4] Length = 256 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 126/223 (56%), Gaps = 6/223 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 + LE RIG+ FA+ +LL ALTH +S + Q SY+RLEFLGDR+LGL ++ L+ Sbjct: 25 AVLEARIGHVFADPTLLPLALTH--VSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKA 82 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A+EGELS R LV ETC+ VA ++ + + + +I ADV E++ Sbjct: 83 LPGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAI 142 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + A++LD G E V + ++ + RDAK+ LQEWA A+ P Y+V RSG Sbjct: 143 LGAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSG 202 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PDH P F + + G+ P G SKR AEQ AA VL REGI Sbjct: 203 PDHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245 >gi|332187768|ref|ZP_08389502.1| ribonuclease III [Sphingomonas sp. S17] gi|332012118|gb|EGI54189.1| ribonuclease III [Sphingomonas sp. S17] Length = 235 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 119/206 (57%), Gaps = 3/206 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S L + G A + + +ALTH S + E+YERLEFLGDR+LGL+++ L+ F + Sbjct: 20 SWLTQIFGRAPQDSAPFHRALTHGSQA---AENYERLEFLGDRVLGLIMAEWLWEQFPNE 76 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS R NSLV+ C+ VAR+L + +R+ R D S ++ DV+E+LI A Sbjct: 77 PEGQLSRRLNSLVTGPVCADVARDLGVRDHLRLGKQARDDGASDSDNVLGDVMEALIGAW 136 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y + G++ A FV K W R GK + K+ LQEWA A PEY+VT RSGP H Sbjct: 137 YREAGLDAARAFVRKAWGDRVHSQGKAPQHPKSALQEWAAAHNRKAPEYEVTDRSGPHHA 196 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAE 212 PRFTV V I A A +K+ AE Sbjct: 197 PRFTVTVRIGRTAEASASGANKQEAE 222 >gi|310815100|ref|YP_003963064.1| ribonuclease III [Ketogulonicigenium vulgare Y25] gi|308753835|gb|ADO41764.1| ribonuclease III [Ketogulonicigenium vulgare Y25] Length = 228 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 88/210 (41%), Positives = 121/210 (57%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 R+G+ F N +L +ALTH S S + +RLEFLGDR+LGL+++ L A EG++ Sbjct: 13 RLGHRFINTEVLMRALTHGSASSPDRSDNQRLEFLGDRVLGLVVAEALLAADKFATEGQI 72 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + RFN LV ETC++VAR +DL + +R+ K ++ AD +E++IAA+YLD G Sbjct: 73 APRFNRLVRRETCAEVARAMDLGAALRIGRSEMKTGGRKKEAVLADAMEAVIAAVYLDAG 132 Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 + A + V K+W RDAKT LQEWA + P Y RSGPDH P FTV Sbjct: 133 FDAAKSVVLKHWAAHIANVDDDARDAKTALQEWAQGRGETPPAYIEEARSGPDHAPIFTV 192 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V + A G SKR AE AA ++L+ Sbjct: 193 RVTLQSGPTATGEAGSKRLAEHAAATKLLQ 222 >gi|302383079|ref|YP_003818902.1| ribonuclease III [Brevundimonas subvibrioides ATCC 15264] gi|302193707|gb|ADL01279.1| ribonuclease III [Brevundimonas subvibrioides ATCC 15264] Length = 237 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 131/227 (57%), Gaps = 8/227 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES-------YERLEFLGDRILGLLISTLL 59 + L +R+G+ F + +LLE+ALTHSS+ ++ ERLEFLGDR+LGLL++ L Sbjct: 10 TALVQRLGHDFRDPALLERALTHSSVGEGADKAAGKPARHNERLEFLGDRVLGLLVAQRL 69 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F +A EGELS R ++LV C +V L + +R+S K + AD V Sbjct: 70 HHDFPAADEGELSSRLHALVDKHACGRVGEALKIGDALRLSPGETKTGGRRKEGVVADAV 129 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+L+AA++LDGG+E A D+ W A + + + K+ LQEWA P Y+V Sbjct: 130 EALLAAVFLDGGLEAARAVFDRAWAHELASPAPRALNNPKSALQEWAQGHGRPLPSYRVA 189 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 ++G DH P FTV V I G+ P + S++ AE+ AA +L+REG+ Sbjct: 190 SQTGSDHAPTFTVEVSIEGVEPLTAVGRSRQDAEKAAATALLQREGV 236 >gi|85708367|ref|ZP_01039433.1| ribonuclease III [Erythrobacter sp. NAP1] gi|85689901|gb|EAQ29904.1| ribonuclease III [Erythrobacter sp. NAP1] Length = 232 Score = 161 bits (408), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 91/232 (39%), Positives = 134/232 (57%), Gaps = 8/232 (3%) Query: 1 MSALRYSTLE--KRIGYAFANRSLLEKALTHSSISHSY------QESYERLEFLGDRILG 52 MSAL T + IG+ + S+ +ALTH S + ++ + Y+RLEFLGDR+LG Sbjct: 1 MSALPPETRDWLGTIGFEVKDGSMWLEALTHGSFNSTHTATGQPEADYQRLEFLGDRVLG 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L +++ LF D +KEG+LS R N+LVS TC+++AR + L+ IR+ R+D S Sbjct: 61 LSVASWLFRSSDRSKEGQLSQRLNALVSGATCARIARTIGLSDHIRLGKQAREDGGSDSD 120 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 +I DV+E++I A +LD G + + + W+ + K+ LQEWA Sbjct: 121 NILGDVMEAIIGASFLDNGFDTTRAIILELWEPELAGDAGKAKHPKSALQEWAAGNRRAM 180 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P+Y V RSGPDH RFTV V I + A+G+ SK AE++AAAE L++ G Sbjct: 181 PQYDVIDRSGPDHAARFTVRVSIHKVGEAEGVATSKHEAEKLAAAEFLEKYG 232 >gi|260432756|ref|ZP_05786727.1| ribonuclease III [Silicibacter lacuscaerulensis ITI-1157] gi|260416584|gb|EEX09843.1| ribonuclease III [Silicibacter lacuscaerulensis ITI-1157] Length = 226 Score = 161 bits (407), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 87/202 (43%), Positives = 122/202 (60%), Gaps = 6/202 (2%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 +KR+G+ FAN LL +ALTH S+S + + +RLEFLGDR+LGL++++ L +A EG Sbjct: 11 QKRLGHQFANPELLVRALTHGSVSSATRPDNQRLEFLGDRVLGLVMASALLEADKTATEG 70 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAAL 126 +L+ RFN+LV ETC+ VAR++DL + +++ R ++ S QA D +E++IAA+ Sbjct: 71 QLAPRFNALVRKETCADVARQIDLGAVLKLG---RSEMMSGGRRKQALLGDAMEAVIAAV 127 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y D G E A V K W R + RDAKT LQEWA A+ P Y R+GPDH Sbjct: 128 YRDAGFEAARDVVLKLWGDRLHQVKADARDAKTALQEWAQARGQKPPSYVELSRTGPDHA 187 Query: 187 PRFTVVVEISGLAPAQGMDCSK 208 P FT+V + AQ SK Sbjct: 188 PVFTIVARLESGPEAQATAPSK 209 >gi|114770106|ref|ZP_01447644.1| Ribonuclease III [alpha proteobacterium HTCC2255] gi|114548943|gb|EAU51826.1| Ribonuclease III [alpha proteobacterium HTCC2255] Length = 226 Score = 161 bits (407), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 90/214 (42%), Positives = 124/214 (57%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + KR+GY F LL +A+THSS+S + + +R EFLGDR+LGL IS LF+ A Sbjct: 8 TAFSKRLGYDFQKPELLIQAMTHSSLSSTTRGDNQRFEFLGDRVLGLSISDALFHKDSDA 67 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ RFN+LV ETC+++A E+ L +++ ++ D +E++I A+ Sbjct: 68 SEGLLAPRFNALVRKETCAEIAIEIKLGEALKMGRSEMLSGGRRKIAVLGDAMEAVIGAV 127 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLD G E+A V + W + RD+KT LQEWA AK TP+Y RSGPDH Sbjct: 128 YLDAGFEIARDMVIRLWSNHIDNAAHDARDSKTILQEWAQAKKLPTPKYIEVDRSGPDHA 187 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P FT+ V I A+ SKRAA Q AAA++L Sbjct: 188 PIFTIEVSIETGQSAKAQAQSKRAASQDAAADLL 221 >gi|2500552|sp|Q52698|RNC_RHOCA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|1177610|emb|CAA92647.1| endoribonuclease III [Rhodobacter capsulatus] Length = 228 Score = 160 bits (406), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 90/222 (40%), Positives = 127/222 (57%), Gaps = 12/222 (5%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S R+G+ F L +ALTHSS+ + + +RLEFLGDR+LGL ++ LF+ A Sbjct: 8 SAFMDRLGHRFTTPEHLVRALTHSSLGSATRPDNQRLEFLGDRVLGLSMAEALFHADGRA 67 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR------VSSDLRKDVCSFMTSIQADVVE 120 EG+L+ RFN+LV ETC+ VAR++DL + ++ +S RKD ++ D +E Sbjct: 68 SEGQLAPRFNALVRKETCAAVARDIDLGAVLKLGRSEMMSGGRRKD------ALLGDAME 121 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++IAA+YLD G EVA V + W R RD KT LQEWA A+ P Y+ R Sbjct: 122 AVIAAVYLDAGFEVARALVLRLWAARIQSVDNDARDPKTALQEWAQARGLPPPRYETLGR 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH P+F + V ++ + SKR AEQ AA +L+R Sbjct: 182 DGPDHAPQFRIAVVLASGETEEAQAGSKRNAEQAAAKALLER 223 >gi|254459764|ref|ZP_05073180.1| ribonuclease III [Rhodobacterales bacterium HTCC2083] gi|206676353|gb|EDZ40840.1| ribonuclease III [Rhodobacteraceae bacterium HTCC2083] Length = 228 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/214 (41%), Positives = 120/214 (56%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+KRI Y F LL +A+THSS+S + +RLEFLGDR+LGL+++ L A E Sbjct: 10 LQKRIDYRFEQGELLTEAVTHSSMSSPSRGDNQRLEFLGDRVLGLVMAEALLGADVKASE 69 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ R+N+LV ETC+ VAR++ L +R+ K ++ D +E+LIAA+Y+ Sbjct: 70 GQLAPRYNALVRKETCADVARDIGLGDVLRLGRSEMKSGGRRKLALLGDGMEALIAAVYV 129 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG A + + W R RD KT LQEWA ++ P Y T RSGPDH P Sbjct: 130 DGGFNAAQALILRLWGSRITSVEADARDPKTSLQEWAQSRGLTPPAYVETARSGPDHAPH 189 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 FT+ + A SKR AEQ AA +L R Sbjct: 190 FTIEARLDTGETASAEAGSKRLAEQAAAKALLTR 223 >gi|294678827|ref|YP_003579442.1| ribonuclease III [Rhodobacter capsulatus SB 1003] gi|294477647|gb|ADE87035.1| ribonuclease III [Rhodobacter capsulatus SB 1003] Length = 228 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 90/222 (40%), Positives = 127/222 (57%), Gaps = 12/222 (5%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S R+G+ F L +ALTHSS+ + + +RLEFLGDR+LGL ++ LF+ A Sbjct: 8 SAFMDRLGHRFTTPEHLVRALTHSSLGSATRPDNQRLEFLGDRVLGLSMAEALFHADGRA 67 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR------VSSDLRKDVCSFMTSIQADVVE 120 EG+L+ RFN+LV ETC+ VAR++DL + ++ +S RKD ++ D +E Sbjct: 68 SEGQLAPRFNALVRKETCAAVARDIDLGAVLKLGRSEMMSGGRRKD------ALLGDAME 121 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++IAA+YLD G EVA V + W R RD KT LQEWA A+ P Y+ R Sbjct: 122 AVIAAVYLDAGFEVARALVLRLWAGRIQSVDNDARDPKTALQEWAQARGLPPPRYETLGR 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH P+F + V ++ + SKR AEQ AA +L+R Sbjct: 182 EGPDHAPQFRIAVVLASGETEEAQAGSKRNAEQAAAKALLER 223 >gi|85068686|gb|ABC54695.1| ribonuclease III [Ehrlichia sp. P-Mtn] Length = 228 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/219 (40%), Positives = 130/219 (59%), Gaps = 3/219 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63 + + + IGY+F N LL +ALTH S+S S +YERLEFLGD +L L+IS +LFN F Sbjct: 4 NNISEIIGYSFKNIQLLNEALTHPSVSSSKDNINFNYERLEFLGDAVLNLVISEMLFNIF 63 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ + +LV +VA+ ++L +FI +S R + +S + +E+LI Sbjct: 64 PKDTEGNLAKKKTALVCGTKLVEVAQFINLGTFIIMSDGERTCGGANNSSNLENALEALI 123 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG++ A F+ +WK A +DAKT LQEWA A+ + P Y + +SGP Sbjct: 124 GAIYLDGGLKAAKNFIFLFWKNSAKHMKVPPQDAKTILQEWAQAQGLLAPSYHIVNKSGP 183 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 DH+P FTV V ++ Q +K+ AEQ AA+ +L + Sbjct: 184 DHNPTFTVEVRMNSHETLQATGNNKKIAEQKAASLMLAK 222 >gi|85705112|ref|ZP_01036212.1| Ribonuclease III [Roseovarius sp. 217] gi|85670434|gb|EAQ25295.1| Ribonuclease III [Roseovarius sp. 217] Length = 238 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 86/213 (40%), Positives = 123/213 (57%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 + R+G+ F LL +ALTHSS+ ++ +RLEFLGDR+LGL++S L + A EG Sbjct: 22 QTRLGHEFTATELLIRALTHSSMVTPNRDDNQRLEFLGDRVLGLVMSEALLSQDKGATEG 81 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +L+ RFN+LV E C+ VARE+DL + +++ ++ D +E++IAA+YLD Sbjct: 82 QLAPRFNALVRKEACADVAREIDLGAVLKLGRSEMLSGGRRKEALLGDAMEAVIAAIYLD 141 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 G + A V + W R + RDAKT LQEWA A+ P+Y R GPDH P F Sbjct: 142 AGFDAARAVVLRLWGARIGEVKDDARDAKTALQEWAQARGLPPPDYIELRRKGPDHAPVF 201 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 T+ ++ A+ SKR AEQ AA +L R Sbjct: 202 TISAQLKSGESAEATAGSKRQAEQTAAKALLAR 234 >gi|84515163|ref|ZP_01002526.1| ribonuclease III [Loktanella vestfoldensis SKA53] gi|84511322|gb|EAQ07776.1| ribonuclease III [Loktanella vestfoldensis SKA53] Length = 226 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 90/216 (41%), Positives = 128/216 (59%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 ++ +R+GY+F LL +++THSS+ +++ +RLEFLGDR+LGL+++ L SA Sbjct: 8 ASFSQRLGYSFVRPDLLVRSVTHSSMVSIHRDDNQRLEFLGDRVLGLVMAEALLKADPSA 67 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ R+N+LV ETC+ VARE+DL + I++ K ++ AD +E++IAA+ Sbjct: 68 PEGLLAPRYNALVRRETCADVAREVDLGAVIKLGRSEMKSGGRRKEALLADAMEAVIAAI 127 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y DGG + A V W R RDAKT LQEWA A+ P Y T R+GPDH Sbjct: 128 YQDGGFDAARKVVLHLWGARITNVADDARDAKTALQEWAQARGEAPPSYTETARTGPDHQ 187 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P FT+ V + SKR AEQ AAA +LK+ Sbjct: 188 PAFTIAVTLESGQTETATAGSKRQAEQAAAAALLKK 223 >gi|307292852|ref|ZP_07572698.1| ribonuclease III [Sphingobium chlorophenolicum L-1] gi|306880918|gb|EFN12134.1| ribonuclease III [Sphingobium chlorophenolicum L-1] Length = 227 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/210 (41%), Positives = 122/210 (58%), Gaps = 3/210 (1%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG + + +ALTH S + +YERLEFLGDRILGLLI+ +++ F + EG+LS Sbjct: 18 IGRKPKDPAAFTQALTHGSAN---AVNYERLEFLGDRILGLLIAEWVYDRFSTEPEGKLS 74 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 RFN+LVS ETC++VAR + + + + R D + ++ DV+E+LI ALYL+GG+ Sbjct: 75 RRFNALVSGETCAEVARSAGVPTHLILGKQARDDGAADSDNVLGDVMEALIGALYLEGGL 134 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 + A T V + W R + K+ LQEWA A PEY +T RSGP H +FTV Sbjct: 135 KEARTLVRRLWADRVDTQASAPKHPKSALQEWAAANKRKPPEYAMTDRSGPHHALKFTVT 194 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V I G A SK+ AE AA +L + Sbjct: 195 VSIKGAGEASATGGSKQEAETAAAKALLDK 224 >gi|84684005|ref|ZP_01011907.1| Ribonuclease III [Maritimibacter alkaliphilus HTCC2654] gi|84667758|gb|EAQ14226.1| Ribonuclease III [Rhodobacterales bacterium HTCC2654] Length = 226 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 86/214 (40%), Positives = 123/214 (57%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 RIG+ F LL +ALTH SIS + +RLEFLGDR+LGL+++ + A EG+ Sbjct: 12 NRIGHDFKRPELLIRALTHGSISSDTRPDNQRLEFLGDRVLGLVMAEAMLAADKEASEGQ 71 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ RFN+LV E C+ VAR+++L + +++ + ++ D +E++IAA+YLD Sbjct: 72 LAPRFNALVRKEACADVARQVELGAVLKLGRSEQMSGGRRKQALLGDAMEAVIAAVYLDA 131 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 G E A + + W R + RDAKT LQEWA A+ P Y R GPDH P FT Sbjct: 132 GFEAAREMIVRLWGDRIGAVEEDARDAKTALQEWAQARKMQPPTYVEIARDGPDHAPEFT 191 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + ++ A+ SKRAAEQ AA +L+R G Sbjct: 192 IEAQLENGEAARAKANSKRAAEQDAARALLERLG 225 >gi|315499946|ref|YP_004088749.1| ribonuclease iii [Asticcacaulis excentricus CB 48] gi|315417958|gb|ADU14598.1| ribonuclease III [Asticcacaulis excentricus CB 48] Length = 242 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 126/223 (56%), Gaps = 6/223 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-----HSYQESYERLEFLGDRILGLLISTLLFNHF 63 LE ++GY FA+R LL+ ALTH+S+S + ERLEFLGDR+LGLL++ L F Sbjct: 19 LEAKLGYRFADRQLLDSALTHASVSDGRPKKTVSSDNERLEFLGDRVLGLLVAEALMQAF 78 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGE+S R + LVS ETC+ VA L + + +R++ K +I D E+LI Sbjct: 79 PQAAEGEMSQRLHGLVSRETCAAVAMSLGVGAAMRLAPGETKSGGRSNLTILGDACEALI 138 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AA+YLDGG E A W+ S + + K+ LQEWA K +P+Y++ RSG Sbjct: 139 AAVYLDGGFETARRIFGPLWQPHIRASHSRSHLNPKSHLQEWAAQKKLPSPKYEIVERSG 198 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PDH P F V + + G P S++ AE+ AA ++ G+ Sbjct: 199 PDHAPIFKVALTLEGYDPVVASGKSRQEAEKAAALSFIEHAGL 241 >gi|89070097|ref|ZP_01157427.1| Ribonuclease III [Oceanicola granulosus HTCC2516] gi|89044318|gb|EAR50461.1| Ribonuclease III [Oceanicola granulosus HTCC2516] Length = 226 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 87/211 (41%), Positives = 125/211 (59%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 R+G+ F N LL +ALTH S S + + +RLEFLGDR+LGL+++ LF A+EG L Sbjct: 13 RLGHRFENPELLLRALTHPSFSSTGRGDNQRLEFLGDRVLGLVMAEALFEADPEAREGLL 72 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + R+N+LV ETC++VARE+D+ + +++ K ++ AD +E++IAA+Y D G Sbjct: 73 APRYNALVRKETCAEVAREIDIGAVLKLGRSEMKTGGRRKEALLADAMEAVIAAIYRDAG 132 Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 A V +W +R + RDAKT LQE A A+ P Y+ R GPDH P FT+ Sbjct: 133 FARAREVVRAHWGKRIGAVAEDARDAKTALQELAQARGEPPPGYREISRHGPDHQPLFTI 192 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V ++ A+ SKR AEQ AA +L R Sbjct: 193 EVRLATGESARAEAGSKRQAEQAAARTLLDR 223 >gi|16125807|ref|NP_420371.1| ribonuclease III [Caulobacter crescentus CB15] gi|221234567|ref|YP_002517003.1| ribonuclease III [Caulobacter crescentus NA1000] gi|22654073|sp|Q9A805|RNC_CAUCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807242|sp|B8H627|RNC_CAUCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|13422947|gb|AAK23539.1| ribonuclease III [Caulobacter crescentus CB15] gi|220963739|gb|ACL95095.1| ribonuclease III [Caulobacter crescentus NA1000] Length = 231 Score = 158 bits (399), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 100/219 (45%), Positives = 137/219 (62%), Gaps = 3/219 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+RIG+ F +R LLE+ALTH+S+ ++ E LEF+GDR+LGLL + L F A Sbjct: 11 LERRIGHRFEDRELLERALTHASVGDGAKKVRDNEVLEFIGDRVLGLLAAEALAQRFPKA 70 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 KEGEL+ R N+LVS ETC++VAR+ +L +R+S+ K SI A E+L+AAL Sbjct: 71 KEGELAPRLNALVSRETCARVARKAELGPALRLSASSSKIGGRETDSILAGATEALMAAL 130 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 Y DGG+E A W ++G+ R RD KT LQEWA + P Y+V R+GPDH Sbjct: 131 YQDGGLEAARKVFLDLWNDEFDRAGEGRPRDPKTALQEWAQGQGRPLPTYRVLDRTGPDH 190 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P FTV V ++G+ PA S++ AE+ AA +L+REG Sbjct: 191 APVFTVEVSVTGVDPAIAKGKSRQEAEKAAAKALLEREG 229 >gi|163733862|ref|ZP_02141304.1| ribonuclease III [Roseobacter litoralis Och 149] gi|161392973|gb|EDQ17300.1| ribonuclease III [Roseobacter litoralis Och 149] Length = 228 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 84/203 (41%), Positives = 124/203 (61%), Gaps = 6/203 (2%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 +KR+G+ F SLL +A+TH+S+S + + +R+EFLGDR+LGL+++ L + A EG Sbjct: 11 QKRLGHQFNQPSLLAQAVTHASMSTANRGDNQRMEFLGDRVLGLVMAEALLGLDNDATEG 70 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAAL 126 +L+ RFN+LV ETC+ VARE+DL + +R+ R ++ S QA D +E++IAA+ Sbjct: 71 QLAPRFNALVRKETCADVAREIDLGAVLRLG---RSEMLSGGRRKQALLGDAIEAVIAAV 127 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y D G + A + + W R + + RDAKT LQEWA A+ P Y+ R GPDH Sbjct: 128 YQDAGFDAARALILRLWGDRVHEVEEDARDAKTALQEWAQARGLQPPHYEEVHRKGPDHA 187 Query: 187 PRFTVVVEISGLAPAQGMDCSKR 209 P FT+ V++S Q SKR Sbjct: 188 PIFTISVQLSTGETDQATAGSKR 210 >gi|220927101|ref|YP_002502403.1| ribonuclease III [Methylobacterium nodulans ORS 2060] gi|219951708|gb|ACL62100.1| ribonuclease III [Methylobacterium nodulans ORS 2060] Length = 244 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 94/220 (42%), Positives = 132/220 (60%), Gaps = 1/220 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 STLE++IG+ FA++ LL +ALTH S + + ESY+RLEFLGDR+LGL ++ LF A Sbjct: 17 STLEEKIGHRFADQELLVRALTHVSAA-TGPESYQRLEFLGDRVLGLAVADGLFAALPGA 75 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS R + LV E+C+ VA D+ +++ + +I ADV E+++ A+ Sbjct: 76 DEGDLSRRLSGLVRRESCAAVATAWDVGPHLKLGAGEVYGGGRRNPAILADVCEAILGAI 135 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +LD G E A T +D+ + G RD K+ LQEWA TP Y V R+GPDH Sbjct: 136 FLDAGYEAAKTVIDRAFAAGNEVEGTRTRDPKSALQEWAQGLGLPTPTYAVVERAGPDHA 195 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 P F + + G+AP G+ SKR AEQ AA +L REG+W Sbjct: 196 PIFRIEARVLGVAPGVGVGGSKRLAEQEAARLLLMREGVW 235 >gi|329890079|ref|ZP_08268422.1| ribonuclease III [Brevundimonas diminuta ATCC 11568] gi|328845380|gb|EGF94944.1| ribonuclease III [Brevundimonas diminuta ATCC 11568] Length = 238 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 127/224 (56%), Gaps = 5/224 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNH 62 + L +R+G+ F + SLLE+ALTHSS+ ERLEFLGDR+LGLL++ L Sbjct: 14 AALRQRLGHDFEDASLLERALTHSSVGEGAGPQVPADNERLEFLGDRVLGLLVADRLVRD 73 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + SA EG+LS R ++LV C++V L + +R+S K + AD VE++ Sbjct: 74 YPSADEGQLSARLHALVDKSACARVGERLGVGDALRLSPGETKTGGRRKAGVIADAVEAI 133 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +AA+Y DGG+ A T ++ W + A + K+ LQEWA + P Y+V R+ Sbjct: 134 LAAVYRDGGLIAAQTVFERAWAEELAAPPSAAVTNPKSALQEWAQGQGRPLPTYEVVQRT 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G DH P FTV ++G PA+ S++ AE+ AA +LKRE + Sbjct: 194 GSDHAPTFTVEATVTGYEPARAQGRSRQEAEKAAAIALLKREDV 237 >gi|330814142|ref|YP_004358381.1| signal peptidase I [Candidatus Pelagibacter sp. IMCC9063] gi|327487237|gb|AEA81642.1| signal peptidase I [Candidatus Pelagibacter sp. IMCC9063] Length = 224 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 1/215 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +EK + F N + LEKALTH SI+ + ERLEF+GDR+LGL+I+T L + Sbjct: 7 TKVEKILNIKFKNTNFLEKALTHKSITKISASNNERLEFIGDRVLGLVIATKLSILYPED 66 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L + SLV+ +TCSQ+ +L+L +I +SS +K+ I D+ ESLI A+ Sbjct: 67 VEGSLDKKLASLVNKDTCSQIIEKLNLGKYILLSSSQQKNKIGH-KKIYGDLCESLIGAV 125 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLD G A FV W++ +S D+KT+LQE++ F V P YK GP H Sbjct: 126 YLDKGFSEANKFVLSLWRENLKRSTIVEVDSKTQLQEYSLKFFKVLPIYKNLSNKGPSHK 185 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P F + V+I+ G SK+ AEQ+AA+++LK Sbjct: 186 PSFKISVKITNSKLCTGEGTSKKKAEQLAASKLLK 220 >gi|126739723|ref|ZP_01755415.1| ribonuclease III [Roseobacter sp. SK209-2-6] gi|126719369|gb|EBA16079.1| ribonuclease III [Roseobacter sp. SK209-2-6] Length = 228 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 81/201 (40%), Positives = 116/201 (57%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E+RIGY F LL +ALTH S+S ++ +RLEFLGDR+LGL+++T + A E Sbjct: 10 FEERIGYRFKRVDLLVRALTHPSVSSPNRKDNQRLEFLGDRVLGLVMATAMLESDKEASE 69 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ RFN+LV ETC+ VARE+DL + +++ ++ D +E++IAA+Y Sbjct: 70 GQLAPRFNALVRKETCADVAREIDLGAVLKLGRSEMMSGGRRKLALLGDGMEAVIAAVYK 129 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 D G EVA + + W QR + + RD KT LQE+ A+ P Y R GPDH+P Sbjct: 130 DAGFEVAQDMILRLWGQRIFQVEEDARDPKTALQEYVQARRQPPPAYVQVSRQGPDHEPI 189 Query: 189 FTVVVEISGLAPAQGMDCSKR 209 FT+ V + Q SKR Sbjct: 190 FTIAVRLQDGTEEQASAGSKR 210 >gi|197105333|ref|YP_002130710.1| ribonuclease III [Phenylobacterium zucineum HLK1] gi|238690159|sp|B4RCU4|RNC_PHEZH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|196478753|gb|ACG78281.1| ribonuclease III [Phenylobacterium zucineum HLK1] Length = 238 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 129/222 (58%), Gaps = 4/222 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + LE+RIGY F +R LLE+ALTH+S+ + ERLEFLGDR+L L + L Sbjct: 9 AELERRIGYVFTDRDLLERALTHASVGDGARAVRHNERLEFLGDRVLNLCAAERLMALDP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A+EGE+S SLV+ C++ A+ L +R+S+ K ++ D E+LIA Sbjct: 69 DAREGEMSRLLASLVNYHACARAAKRAGLQEALRLSASATKVGARKSDAVLGDACEALIA 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ALY+DGG+E A F K+W + + + R +D KT+LQEW P Y++ + GP Sbjct: 129 ALYIDGGLETARAFFLKFWDEEFARLDEPRAKDPKTQLQEWVQGMGLPLPTYEIVSQEGP 188 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA-AEVLKREG 224 H P FTV V+++G +G S++AAE+ AA +LKREG Sbjct: 189 PHAPSFTVEVQVAGFGAERGEGRSRQAAEKAAAQCMLLKREG 230 >gi|188581484|ref|YP_001924929.1| ribonuclease III [Methylobacterium populi BJ001] gi|179344982|gb|ACB80394.1| Ribonuclease III [Methylobacterium populi BJ001] Length = 256 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/221 (40%), Positives = 121/221 (54%), Gaps = 2/221 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + LE RIG+ F + +LL ALTH S + SY+RLEFLGDR+LGL ++ L+ Sbjct: 25 AVLEARIGHVFTDPTLLPLALTHVSKAGPSGRVGSYQRLEFLGDRVLGLAVAETLYRALP 84 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A+EGELS R LV ETC+ VA ++ + + + +I ADV E+++ Sbjct: 85 DAEEGELSRRLAGLVRRETCAAVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAILG 144 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A++LD G E V + ++ RDAK+ LQEWA A+ P Y+V RSGPD Sbjct: 145 AVFLDAGYEATRAIVQRSFRPGEDTGAPRGRDAKSALQEWAMARSLAIPVYEVVERSGPD 204 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 H P F + V + + P G SKR AEQ AA VL RE I Sbjct: 205 HAPVFRIAVRVESIEPGYGEGASKRVAEQEAARAVLDRENI 245 >gi|119383173|ref|YP_914229.1| ribonuclease III [Paracoccus denitrificans PD1222] gi|119372940|gb|ABL68533.1| RNAse III [Paracoccus denitrificans PD1222] Length = 241 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 84/213 (39%), Positives = 123/213 (57%), Gaps = 1/213 (0%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +R+G+ F+ LL +ALTH SI+ + + +RLEFLGDR+LGL I+ LF+ +A EG+ Sbjct: 24 ERLGHEFSRPELLRRALTHGSIASTTRPDNQRLEFLGDRVLGLTIAEALFSADRAATEGQ 83 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ R+N+LV ETC+ +ARE+ L +++ ++ AD +E++IAA+YLD Sbjct: 84 LAPRYNALVKGETCAAIAREIGLGEVLKLGRSEMMSGGRRKEALLADAMEAVIAAVYLDA 143 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 G E A V W R RDAKT LQEWA A+ P Y R+GPDH P F Sbjct: 144 GFETARGVVLGLWSDRLANVETDARDAKTALQEWAQAQGMSPPRYVQIARTGPDHAPEFQ 203 Query: 191 VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + V + G + +KR+ EQ AA +L++ Sbjct: 204 ITVRLDDGREASASGKGTKRSIEQAAATAMLEQ 236 >gi|110678686|ref|YP_681693.1| ribonuclease III [Roseobacter denitrificans OCh 114] gi|123362135|sp|Q16AI6|RNC_ROSDO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|109454802|gb|ABG31007.1| ribonuclease III [Roseobacter denitrificans OCh 114] Length = 228 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 83/205 (40%), Positives = 124/205 (60%), Gaps = 6/205 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 + +KR+G+ F +LL +A+TH+S+S + + +R+EFLGDR+LGL+++ L ++A Sbjct: 9 SFQKRLGHQFNQPALLAQAVTHASMSTANRGDNQRMEFLGDRVLGLVMAEALLRLDNNAT 68 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIA 124 EG+L+ RFN+LV ETC+ VARE+DL + +R+ R ++ S QA D +E++IA Sbjct: 69 EGQLAPRFNALVRKETCADVAREIDLGAVLRLG---RSEMLSGGRRKQALLGDAIEAVIA 125 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+Y D G + A + + W R + + RD KT LQEWA A+ P Y+ R GPD Sbjct: 126 AVYQDAGFDAARALILRLWGDRVHEVEEDARDPKTALQEWAQARGLQPPRYEEVSRKGPD 185 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209 H P FT+ V IS Q SKR Sbjct: 186 HAPIFTISVRISTGETDQATAGSKR 210 >gi|241761668|ref|ZP_04759755.1| Ribonuclease III [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260754033|ref|YP_003226926.1| ribonuclease III [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283856457|ref|YP_163110.2| ribonuclease III [Zymomonas mobilis subsp. mobilis ZM4] gi|292495068|sp|Q9Z5U2|RNC_ZYMMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|241373976|gb|EER63509.1| Ribonuclease III [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553396|gb|ACV76342.1| ribonuclease III [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283775461|gb|AAV89999.2| Ribonuclease III [Zymomonas mobilis subsp. mobilis ZM4] Length = 246 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 78/202 (38%), Positives = 119/202 (58%), Gaps = 3/202 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S +EK +G+ + +L +A+TH S +S Y+RLEFLGDR+LGL+I+ L++ F Sbjct: 31 SWIEKNLGHRPKDPALFLRAMTHPSHGNS---DYQRLEFLGDRVLGLVIANWLYDLFPRE 87 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS R NSLVS +C+ +AR + L ++R+ R D + ++ DV+E++I A+ Sbjct: 88 PEGKLSRRLNSLVSGASCASIARIVGLPQWLRLGKQARDDGAAASDNVLGDVMEAMIGAI 147 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +L+ GIE AG + KYW + K+ LQEWA A P Y++ R+GP H+ Sbjct: 148 FLESGIEAAGKLIHKYWAPLVTGQESAPKHPKSALQEWAAAHNRRPPVYEIVSRTGPQHN 207 Query: 187 PRFTVVVEISGLAPAQGMDCSK 208 P FT+ V I+G+ A SK Sbjct: 208 PCFTIQVSIAGVGEASAEGSSK 229 >gi|146278605|ref|YP_001168764.1| ribonuclease III [Rhodobacter sphaeroides ATCC 17025] gi|189043338|sp|A4WVP5|RNC_RHOS5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|145556846|gb|ABP71459.1| RNAse III [Rhodobacter sphaeroides ATCC 17025] Length = 229 Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 84/204 (41%), Positives = 119/204 (58%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E RIG+AF L +A+TH+S+S + + +RLEFLGDR+LGL+++ L +A EG Sbjct: 11 ESRIGHAFREPDRLLRAVTHASLSSATRPDNQRLEFLGDRVLGLVMAEALLAADKAATEG 70 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +L+ RFN+LV ETC+ VARE+ L +++ ++ D +E++IAA+YLD Sbjct: 71 QLAPRFNALVRKETCAAVAREVGLGDVLKLGRSEMMSGGRRKEALLGDALEAVIAAVYLD 130 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 G E A V + W +R + RDAKT LQEWA A+ P Y+ RSGPDH P F Sbjct: 131 AGFEAARRLVLRLWGERIAQVEADARDAKTALQEWAQARGLPPPCYEAVDRSGPDHAPIF 190 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQ 213 TV V + + +KR AEQ Sbjct: 191 TVEVRLGNGETERSAAGTKRVAEQ 214 >gi|295690019|ref|YP_003593712.1| ribonuclease III [Caulobacter segnis ATCC 21756] gi|295431922|gb|ADG11094.1| ribonuclease III [Caulobacter segnis ATCC 21756] Length = 231 Score = 154 bits (390), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 92/203 (45%), Positives = 124/203 (61%), Gaps = 3/203 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+RIG+ F +R LLE+ALTH+S+ ++ E LEF+GDR+LGLL + L F A Sbjct: 11 LERRIGHQFEDRELLERALTHASVGDGAKKVRDNEVLEFIGDRVLGLLAAEALAQRFPKA 70 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 KEGEL+ R N+LVS ETC++VAR +L +R+S+ K SI A E+L+AAL Sbjct: 71 KEGELAPRLNALVSRETCARVARVAELGPALRLSASSSKIGGRETESILAGATEALMAAL 130 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 Y DGG++ A W ++G+ R RD KT LQEWA K P Y+V R+GPDH Sbjct: 131 YQDGGLDAARRVFLSLWADEFDRAGEGRPRDPKTALQEWAQGKGRPLPTYRVLDRTGPDH 190 Query: 186 DPRFTVVVEISGLAPAQGMDCSK 208 P FTV V ++G+ PA S+ Sbjct: 191 APVFTVEVVVAGVDPAMAKGKSR 213 >gi|312115946|ref|YP_004013542.1| ribonuclease III [Rhodomicrobium vannielii ATCC 17100] gi|311221075|gb|ADP72443.1| ribonuclease III [Rhodomicrobium vannielii ATCC 17100] Length = 236 Score = 154 bits (389), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 96/222 (43%), Positives = 128/222 (57%), Gaps = 1/222 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 R LE +GY F R LL +ALTHSS S ERLEFLGDR+LGL I+ LLF F Sbjct: 7 RVEELEASLGYKFQERGLLAEALTHSSARSEKGGRDNERLEFLGDRVLGLSIAALLFERF 66 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A+E EL+ FN+LV TC++VA +L+L + ++ + I AD VE+L+ Sbjct: 67 PKAREVELARHFNALVCKTTCAEVALKLELGPHLVMAPSEARSGGRKKDVILADAVEALL 126 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+ +DGG A T V ++W+ S DAKT LQE+A ++ P+Y RSG Sbjct: 127 GAISVDGGFAAAETVVHRHWEPFIASSEPPAPDAKTALQEFAQSQKRGLPDYHEVERSGA 186 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 DH P FTV V + GL P +G S + A+Q AA +LKREG+ Sbjct: 187 DHAPNFTVEVRVQGLKPERGTGSSLKKAQQAAAEALLKREGV 228 >gi|144899862|emb|CAM76726.1| ribonuclease III [Magnetospirillum gryphiswaldense MSR-1] Length = 229 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/217 (39%), Positives = 116/217 (53%), Gaps = 4/217 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIS 56 M A L +R+G+ FA LL +ALTH S++ YERLEFLGDR+LGL+++ Sbjct: 1 MDAGPIHDLCQRLGHEFAQSQLLTQALTHPSVAQGRAPRRNTPYERLEFLGDRVLGLVVA 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +LF+ F + EG L+ R +LV E+ + VA ++ L + +S ++ A Sbjct: 61 DMLFHRFPTEAEGALARRHAALVRRESLAVVAGQIGLPPCLTLSKGEEDAGGRGNPALLA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D E++I ALY D G EVA FV W + + +DAKT LQEWA P Y Sbjct: 121 DACEAVIGALYADAGFEVAARFVRSAWTALMDAAAQPPKDAKTALQEWAQGLGKPLPVYT 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 V + GP HDP F V V + G+ P G SKR AEQ Sbjct: 181 VVGQDGPPHDPTFVVSVTVEGVDPVHGTGASKRVAEQ 217 >gi|163793042|ref|ZP_02187018.1| SsrA-binding protein [alpha proteobacterium BAL199] gi|159181688|gb|EDP66200.1| SsrA-binding protein [alpha proteobacterium BAL199] Length = 227 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/215 (39%), Positives = 123/215 (57%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S L + +G+ F + +L +A+TH+S +YERLEFLGDR+L L ++ L + F Sbjct: 9 SHLAEVLGHTFNHPDILRRAVTHASAEPRAWNAYERLEFLGDRVLALAVAEQLLDRFPHE 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG ++ R SLV ET + VA +DL ++ VS +I +D +E++IAAL Sbjct: 69 REGAIAKRHVSLVRRETLADVAHTIDLGRYLIVSRGEDDAGARASDTILSDSMEAVIAAL 128 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG+ A F+ K+W + +D KT LQEWA + P Y ++GP H Sbjct: 129 YLDGGLAAAQKFILKHWNPLLEMDHRPPQDPKTGLQEWAQGRRLPLPVYTTVEQTGPAHA 188 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P FTV V + GLAP + SKR AEQ+AAA +L+ Sbjct: 189 PEFTVEVVVEGLAPQRASGKSKRLAEQLAAAAMLE 223 >gi|77462220|ref|YP_351724.1| RNAse III [Rhodobacter sphaeroides 2.4.1] gi|126461082|ref|YP_001042196.1| ribonuclease III [Rhodobacter sphaeroides ATCC 17029] gi|221641174|ref|YP_002527436.1| Ribonuclease 3 [Rhodobacter sphaeroides KD131] gi|332560101|ref|ZP_08414423.1| ribonuclease III [Rhodobacter sphaeroides WS8N] gi|90101641|sp|Q3J5W1|RNC_RHOS4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043337|sp|A3PGF8|RNC_RHOS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807895|sp|B9KSA7|RNC_RHOSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|77386638|gb|ABA77823.1| RNAse III [Rhodobacter sphaeroides 2.4.1] gi|126102746|gb|ABN75424.1| RNAse III [Rhodobacter sphaeroides ATCC 17029] gi|221161955|gb|ACM02935.1| Ribonuclease 3 [Rhodobacter sphaeroides KD131] gi|332277813|gb|EGJ23128.1| ribonuclease III [Rhodobacter sphaeroides WS8N] Length = 229 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 84/204 (41%), Positives = 117/204 (57%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E RIG+ F L +A+THSS+S + +RLEFLGDR+LGL+++ L +A EG Sbjct: 11 EGRIGHQFREPERLLRAVTHSSLSSVTRSDNQRLEFLGDRVLGLVMAEALLAADRAASEG 70 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +L+ RFN+LV ETC+ VARE+ L +++ ++ D +E++IAA+YLD Sbjct: 71 QLAPRFNALVRKETCAAVAREVALGDVLKLGRSEMMSGGRRKEALLGDALEAVIAAVYLD 130 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 G E A V + W R + + RDAKT LQEWA A+ P Y+ RSGPDH P F Sbjct: 131 AGFEAARQLVLRLWGARIAQVERDARDAKTALQEWAQARGLPPPTYEAVDRSGPDHAPIF 190 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQ 213 TV V + + +KR AEQ Sbjct: 191 TVEVRLGNGETDRAAAGTKRVAEQ 214 >gi|149200806|ref|ZP_01877781.1| Ribonuclease III [Roseovarius sp. TM1035] gi|149145139|gb|EDM33165.1| Ribonuclease III [Roseovarius sp. TM1035] Length = 227 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/186 (40%), Positives = 112/186 (60%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 + R+G+ F N +LL +ALTHSS++ ++ +RLEFLGDR+LGL+++ L + A EG Sbjct: 11 QARLGHEFTNAALLVRALTHSSMATPNRDDNQRLEFLGDRVLGLVMAEALLSQDQGATEG 70 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +L+ RFN+LV E C+ VARE+DL +++ ++ D +E++IAA+YLD Sbjct: 71 QLAPRFNALVRKEACADVAREIDLGGVLKLGRSEMLSGGRRKEALLGDAMEAVIAAVYLD 130 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 G E A V + W R + RDAKT LQEWA A+ P+Y R GPDH P F Sbjct: 131 AGFETARGVVLRLWGARLGAVKEDARDAKTSLQEWAQARGLPPPDYVELARKGPDHAPIF 190 Query: 190 TVVVEI 195 T+ ++ Sbjct: 191 TICAQL 196 >gi|126726095|ref|ZP_01741937.1| ribonuclease III [Rhodobacterales bacterium HTCC2150] gi|126705299|gb|EBA04390.1| ribonuclease III [Rhodobacterales bacterium HTCC2150] Length = 228 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 115/183 (62%), Gaps = 6/183 (3%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 RIG+ F+ LL +A+TH+SIS + + +RLEFLGDRILGL+++ L N SA EG L Sbjct: 13 RIGHEFSKPELLVEAVTHASISSANRSDNQRLEFLGDRILGLVMAEALLNADTSANEGTL 72 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYL 128 + RFN+LV ETC+ VARE+DL + +++ R ++ S ++ D +E++IAA+YL Sbjct: 73 APRFNALVRKETCADVAREIDLGAVLKLG---RSEMISGGRRKLALLGDAMEAVIAAVYL 129 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 D G E A F+ + W +R + RD K+ LQEWA A+ P YK+ R G DH P Sbjct: 130 DAGFEAARDFILRSWGERINAVDEDARDPKSSLQEWAQARKMPPPVYKLLRREGADHAPM 189 Query: 189 FTV 191 FT+ Sbjct: 190 FTI 192 >gi|58584360|ref|YP_197933.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75498100|sp|Q5GTI3|RNC_WOLTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|58418676|gb|AAW70691.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 243 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 123/219 (56%), Gaps = 4/219 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 T+ K I Y F N ++LE+ALTH S+ S + E+YERLEFLGD IL +++S +LF F Sbjct: 17 TISKIINYRFKNDAILEEALTHPSLNKRNSKNQIENYERLEFLGDSILNMIVSAILFRLF 76 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 KEG L+ R LV T + VA+E+ L +FI +++ R + + +E+LI Sbjct: 77 PKEKEGALARRKTDLVCGNTIANVAKEIKLGNFIIMNNSERCNGGKRNLKNLENALEALI 136 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+Y+DGG FV K+W++RA +D KT LQEW PEY++ ++GP Sbjct: 137 GAIYIDGGFANVKKFVTKHWEERAKGMLSLPQDPKTSLQEWTQKNKLPLPEYELMKQTGP 196 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H P FT+ + I SK+ AEQ AA +L++ Sbjct: 197 AHSPEFTISICIENYGKVFACASSKKVAEQKAAELMLEK 235 >gi|99082399|ref|YP_614553.1| RNAse III [Ruegeria sp. TM1040] gi|99038679|gb|ABF65291.1| RNAse III [Ruegeria sp. TM1040] Length = 242 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 80/203 (39%), Positives = 121/203 (59%), Gaps = 6/203 (2%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 + R+G+ F++ LL +ALTH S+S ++ +RLEFLGDR+LGL+++T L H A EG Sbjct: 25 QARLGHEFSSPELLIRALTHPSVSSPNRQDNQRLEFLGDRVLGLVMATALLEHDKDATEG 84 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAAL 126 +L+ RFN+LV ETC+ VAR++DL + +++ R ++ S QA D +E++IAA+ Sbjct: 85 QLAPRFNALVRKETCADVARQIDLGAVLKLG---RSEMLSGGRRKQALLGDAMEAVIAAV 141 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y D G E A + + + W +R + RD KT LQE+ A+ P Y + R GPDH+ Sbjct: 142 YRDAGFEAAQSVILRLWGKRVGTVEEDARDPKTALQEFVQARRQPPPAYVLVARKGPDHE 201 Query: 187 PRFTVVVEISGLAPAQGMDCSKR 209 P FT+ + Q SKR Sbjct: 202 PIFTIAARLEDGTEEQATAGSKR 224 >gi|103486701|ref|YP_616262.1| ribonuclease III [Sphingopyxis alaskensis RB2256] gi|123253313|sp|Q1GTU3|RNC_SPHAL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|98976778|gb|ABF52929.1| RNAse III [Sphingopyxis alaskensis RB2256] Length = 226 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 86/208 (41%), Positives = 119/208 (57%), Gaps = 7/208 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 L L IG + +L + ALTH S + Y+RLEFLGDR+LGL++++ L+ F Sbjct: 5 LNTEALADIIGCIPDDLTLYDLALTHGSTGRA---DYQRLEFLGDRVLGLVLASELYTRF 61 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +A EGE+S R + L S TC+ +A+ LDL + IR + R D +I AD +E+LI Sbjct: 62 PAASEGEMSSRLHVLASGATCAAIAQRLDLPALIRFGAQARSDGGRHSDNIAADAIEALI 121 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AL+L+ GIE A TF+ W AL G+ + K LQEWA A+ PEY++ R Sbjct: 122 GALFLERGIEAARTFILAQWG--ALIDGQQAAPKHPKAALQEWALARGRRPPEYEIVSRE 179 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDH PRF + V I LA A+ SK+ Sbjct: 180 GPDHAPRFRIAVSIGKLARAEAQGASKQ 207 >gi|87199824|ref|YP_497081.1| ribonuclease III [Novosphingobium aromaticivorans DSM 12444] gi|87135505|gb|ABD26247.1| RNAse III [Novosphingobium aromaticivorans DSM 12444] Length = 252 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 88/203 (43%), Positives = 114/203 (56%), Gaps = 3/203 (1%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 G A A + +ALTH S+ Y+RLEFLGDR+LGL I+ L D+A EG+LS Sbjct: 45 GAAPARPEIWAEALTHGSMGEP--RDYQRLEFLGDRVLGLAIADWLHEKSDAA-EGKLSQ 101 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 R N+LVS ETC+ VAR + LA IR+ R D + +I DV+E+LI AL+++ G E Sbjct: 102 RLNALVSRETCADVARTIGLAGHIRLGKQARDDGGAQSDNILGDVMEALIGALFVERGFE 161 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 A FV K W++ L R+ K LQEWA P Y + R GPDH FTV V Sbjct: 162 AARKFVRKAWEKPMLSGTGQRKHPKAALQEWAAGNRRKPPVYTLVSREGPDHAATFTVSV 221 Query: 194 EISGLAPAQGMDCSKRAAEQVAA 216 E+ G+ A SK+ AE AA Sbjct: 222 EVKGVGEASARGSSKQEAETAAA 244 >gi|254511570|ref|ZP_05123637.1| ribonuclease III [Rhodobacteraceae bacterium KLH11] gi|221535281|gb|EEE38269.1| ribonuclease III [Rhodobacteraceae bacterium KLH11] Length = 225 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 82/202 (40%), Positives = 117/202 (57%), Gaps = 6/202 (2%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 ++R+GY F++ LL ++LTH S+S S + +RLEFLGDR+LGL+++T L A EG Sbjct: 11 QQRLGYEFSDPELLVRSLTHGSVSSSTRPDNQRLEFLGDRVLGLVMATALLEADKKASEG 70 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAAL 126 +L+ RFN+LV E C+ VAR++DL + +++ R ++ S QA D +E++IAA+ Sbjct: 71 QLAPRFNALVRKEACADVARQIDLGAVLKLG---RSEMLSGGRRKQALLGDAMEAVIAAI 127 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y D G E A + W R RDAKT LQEWA A+ P Y R+GPDH Sbjct: 128 YRDAGFEAARDVILALWGDRIHMVEADARDAKTSLQEWAQARGQKPPAYVEVKRTGPDHA 187 Query: 187 PRFTVVVEISGLAPAQGMDCSK 208 P FT+ + AQ SK Sbjct: 188 PVFTIAARLQDGTEAQATAGSK 209 >gi|149913470|ref|ZP_01902003.1| 4'-phosphopantetheinyl transferase [Roseobacter sp. AzwK-3b] gi|149812590|gb|EDM72419.1| 4'-phosphopantetheinyl transferase [Roseobacter sp. AzwK-3b] Length = 227 Score = 150 bits (380), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 6/185 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E+R+G+ F +LL +A+THSS++ ++ +RLEFLGDR+LGL+++ L SA+EG Sbjct: 11 EERLGHRFEQSALLVRAVTHSSMASPTRDDNQRLEFLGDRVLGLVMAEALLERDRSAEEG 70 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAAL 126 L+ RFN+LV E C+ VARE+ L +++ R ++ S QA D +E++IAA+ Sbjct: 71 LLAPRFNALVRKEACADVAREIALGDVLKLG---RSEMLSGGRRKQALLGDAMEAVIAAV 127 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y D G +VA V + W +R + RDAKT LQEWA A+ P Y T RSGPDH Sbjct: 128 YRDAGFDVAKAVVLRLWGKRIDSVKEDARDAKTALQEWAQARGQTPPAYVETARSGPDHA 187 Query: 187 PRFTV 191 P+FT+ Sbjct: 188 PQFTI 192 >gi|126728500|ref|ZP_01744316.1| Ribonuclease III [Sagittula stellata E-37] gi|126711465|gb|EBA10515.1| Ribonuclease III [Sagittula stellata E-37] Length = 225 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/183 (39%), Positives = 113/183 (61%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE ++G+ F +++LL +A+TH+S+S +E +RLEFLGDR+LGL+++ L H +A E Sbjct: 10 LEDKLGHTFRDKALLRRAVTHASMSGPGREDNQRLEFLGDRVLGLVMAEALLAHDRNASE 69 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ RFN+LV ETC++VAR + + +++ + ++ D +E++IAA+YL Sbjct: 70 GLLAPRFNALVRKETCAEVARTIGVGDALKLGRSEQMSGGRRKQALLGDAMEAVIAAVYL 129 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG +VA + + W + +DAKT LQEWA + P Y RSGPDH P Sbjct: 130 DGGFDVAQDMILRLWAPLIASVEEDAKDAKTTLQEWAQGRGMTPPSYTEVERSGPDHAPV 189 Query: 189 FTV 191 FT+ Sbjct: 190 FTI 192 >gi|83311357|ref|YP_421621.1| dsRNA-specific ribonuclease [Magnetospirillum magneticum AMB-1] gi|82946198|dbj|BAE51062.1| dsRNA-specific ribonuclease [Magnetospirillum magneticum AMB-1] Length = 228 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 121/214 (56%), Gaps = 4/214 (1%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+AFA LL +ALTH S+ + + YERLEFLGDR+LGL+++ +LF+ F + E Sbjct: 12 LGHAFARPELLAQALTHPSMHQGRKSRTSDPYERLEFLGDRVLGLVVAEMLFSRFPNEAE 71 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ R +LV E +++A E+ L + ++ I AD E++I ALY Sbjct: 72 GALARRHAALVRREAVARIATEIGLGRCLVLAKGEDDAGGRANPGILADACEAVIGALYA 131 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 D G VA +FV W+ ++ +DAKT LQEWA + P Y+V + GP H+P Sbjct: 132 DAGFAVAASFVRSRWEPMMEEALAPPKDAKTGLQEWAQGRGKPLPHYQVLGQEGPPHEPI 191 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F + V + G+ A G SKR AEQ AA +L++ Sbjct: 192 FLIEVSVEGVGSAVGRGASKRVAEQAAAGLLLEQ 225 >gi|86135727|ref|ZP_01054306.1| ribonuclease III [Roseobacter sp. MED193] gi|85826601|gb|EAQ46797.1| ribonuclease III [Roseobacter sp. MED193] Length = 222 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 78/200 (39%), Positives = 114/200 (57%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E+RIG+ F LL +ALTH S+S ++ +RLEFLGDR+LGL+++T L +H A EG Sbjct: 5 EQRIGHQFVRPELLVRALTHPSVSSPNRKDNQRLEFLGDRVLGLVMATALLDHDKDASEG 64 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +L+ RFN+LV E C+ VARE++L +++ ++ D +E++IAA+Y D Sbjct: 65 QLAPRFNALVRKEACADVAREIELGEVLKLGRSEMMSGGRRKLALLGDGMEAVIAAVYKD 124 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 G EVA + + W R + RD KT LQE+ A+ P Y R+GPDH P F Sbjct: 125 AGFEVAQAMILRLWGARIHQVEADARDPKTALQEYVQARRQNPPAYVQVARTGPDHQPIF 184 Query: 190 TVVVEISGLAPAQGMDCSKR 209 T+ V + + SKR Sbjct: 185 TIAVRLEDGTEERATAGSKR 204 >gi|259417917|ref|ZP_05741836.1| ribonuclease III [Silicibacter sp. TrichCH4B] gi|259346823|gb|EEW58637.1| ribonuclease III [Silicibacter sp. TrichCH4B] Length = 228 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/203 (38%), Positives = 119/203 (58%), Gaps = 6/203 (2%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 + R+G+ F++ LL +ALTH S+S ++ +RLEFLGDR+LGL+++T L H A EG Sbjct: 11 QARLGHEFSSPELLIRALTHPSVSSPNRQDNQRLEFLGDRVLGLVMATALLEHDKHATEG 70 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAAL 126 +L+ RFN+LV E C+ VAR++DL + +++ R ++ S QA D +E++IAA+ Sbjct: 71 QLAPRFNALVRKEACADVARQIDLGAVLKLG---RSEMLSGGRRKQALLGDAMEAVIAAV 127 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y D G E A + + W +R RD KT LQE+ A+ P Y + R+GPDH+ Sbjct: 128 YKDAGFEAAQNVILRLWGKRVGTVEDDARDPKTALQEFVQARRQPPPAYVLIARTGPDHE 187 Query: 187 PRFTVVVEISGLAPAQGMDCSKR 209 P FT+ + Q SKR Sbjct: 188 PVFTIAARLEDGTEEQATAGSKR 210 >gi|73667460|ref|YP_303476.1| ribonuclease III [Ehrlichia canis str. Jake] gi|90101626|sp|Q3YQX7|RNC_EHRCJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|72394601|gb|AAZ68878.1| RNAse III [Ehrlichia canis str. Jake] Length = 226 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/217 (39%), Positives = 122/217 (56%), Gaps = 2/217 (0%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 T+ K I Y F N LL +ALTH SI S + +YERLEFLGD +L ++IS +LFN F Sbjct: 4 TISKTIKYHFKNPQLLHEALTHPSIISKDSLKFNYERLEFLGDAVLNIVISEMLFNIFPK 63 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG L+ + +LV +VA+ ++L FI +S R + + + +E+LI A Sbjct: 64 DTEGNLAKKKTALVCGNQLVKVAQSINLGQFIIMSDGERTCGGANNHNNLENALEALIGA 123 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +YLDGG+ A F+ +WK A+ +DAKT LQE+ K P Y + +SGPDH Sbjct: 124 IYLDGGLTAAQNFIHSFWKHTAIHMDIPPQDAKTILQEFIQGKRLPAPTYHIIDKSGPDH 183 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +P FTV + I Q +K+ AEQ AA+ +L + Sbjct: 184 NPIFTVELRIPLYKTIQATGNNKKLAEQKAASLMLNQ 220 >gi|149186754|ref|ZP_01865065.1| ribonuclease III [Erythrobacter sp. SD-21] gi|148829662|gb|EDL48102.1| ribonuclease III [Erythrobacter sp. SD-21] Length = 223 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 132/227 (58%), Gaps = 7/227 (3%) Query: 1 MSALRYSTLE--KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 MSAL T E ++ G+ N +L + ALTH S+ ++ YERLEFLGDR+LGL I+ Sbjct: 1 MSALEPDTREWLEKTGFTVNNEALWQAALTHGSMGE--KDDYERLEFLGDRVLGLSIAHW 58 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ D A EG+L+ R N++VS E C+ VAR ++L+ +R+S R D +I DV Sbjct: 59 LYEQSD-APEGKLAQRLNAIVSREMCAIVARGIELSEHMRISKQARADGGKDSDNILGDV 117 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKV 177 +E+L+ A +LD G + + V W+ AL+SG + K+ LQEWA PEY+V Sbjct: 118 MEALLGAQFLDNGFKKSRELVHVLWRP-ALESGAGESKHPKSALQEWAAGNRRKPPEYEV 176 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 RSGPDH +FTV V + + A SK AE+ AA + +++ G Sbjct: 177 VERSGPDHAAQFTVKVSVHKVGEATATAGSKGEAERAAAKKFMEKFG 223 >gi|91201952|emb|CAJ75012.1| similar to ribonuclease III [Candidatus Kuenenia stuttgartiensis] Length = 236 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/211 (41%), Positives = 124/211 (58%), Gaps = 3/211 (1%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IGY+F LLEKALTH+S S ERLEFLGD +LG++IS L+ EGEL+ Sbjct: 20 IGYSFKKMLLLEKALTHTSCRVENNFSNERLEFLGDAVLGMIISDYLYKTMPHYSEGELT 79 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + +VS T ++V E L F+ V L D F S+ A+V E+LIAA+Y+DGGI Sbjct: 80 NVKSVVVSQSTLAKVGMEAGLKEFLLVGRGLN-DRDLFPKSLLANVFEALIAAIYIDGGI 138 Query: 133 EVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E A F +Y K+ + + +++ K+ LQ+++ ++G+TP Y++ + GPDH F Sbjct: 139 EAASEFTLRYLKKEIDLVCKNQHKKNYKSILQQYSQKEYGITPTYRLLQQIGPDHGKSFE 198 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +VV I G +G SK+ AEQ AA E LK Sbjct: 199 IVVSIKGSEYGRGWGKSKKEAEQSAAKEALK 229 >gi|99035124|ref|ZP_01314908.1| hypothetical protein Wendoof_01000254 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 234 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 123/220 (55%), Gaps = 4/220 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 + K I Y F N ++LE+ALTH S++ + SYERLEFLGD +L +++S LF F Sbjct: 10 ISKIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVSATLFKLFP 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 KEG L+ R LV T + VA+E+ L SFI +++ R + + +E+LI Sbjct: 70 EEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCNGGRCNLKNLENSLEALIG 129 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+Y+DGG+E F+ +YW++ A +D KT LQEW PEY++ ++GP Sbjct: 130 AIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQKNKLPLPEYELVKQTGPA 189 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H+P FT+ V I SK+ AEQ AA +L++ G Sbjct: 190 HNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEKIG 229 >gi|42521037|ref|NP_966952.1| ribonuclease III, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225630900|ref|YP_002727691.1| ribonuclease III, putative [Wolbachia sp. wRi] gi|225677311|ref|ZP_03788288.1| ribonuclease III, putative [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|81652137|sp|Q73FT3|RNC_WOLPM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807910|sp|C0R4Q8|RNC_WOLWR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|42410778|gb|AAS14886.1| ribonuclease III, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225590638|gb|EEH11888.1| ribonuclease III, putative [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225592881|gb|ACN95900.1| ribonuclease III, putative [Wolbachia sp. wRi] Length = 232 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 123/220 (55%), Gaps = 4/220 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 + K I Y F N ++LE+ALTH S++ + SYERLEFLGD +L +++S LF F Sbjct: 8 ISKIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVSATLFKLFP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 KEG L+ R LV T + VA+E+ L SFI +++ R + + +E+LI Sbjct: 68 EEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCNGGRCNLKNLENSLEALIG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+Y+DGG+E F+ +YW++ A +D KT LQEW PEY++ ++GP Sbjct: 128 AIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQKNKLPLPEYELVKQTGPA 187 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H+P FT+ V I SK+ AEQ AA +L++ G Sbjct: 188 HNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEKIG 227 >gi|57239534|ref|YP_180670.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden] gi|58579518|ref|YP_197730.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden] gi|81352757|sp|Q5HA74|RNC_EHRRW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|57161613|emb|CAH58541.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden] gi|58418144|emb|CAI27348.1| Ribonuclease III [Ehrlichia ruminantium str. Welgevonden] Length = 227 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 84/218 (38%), Positives = 124/218 (56%), Gaps = 2/218 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + K I Y F N LL +ALTH S+ + +YERLEFLGD +L L+IS +LFN F Sbjct: 4 NAISKIIKYDFKNTQLLNEALTHPSVLSKDNNNFNYERLEFLGDAVLNLVISEMLFNIFP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +LV ++A+ ++L FI +S R + ++ + +E+LI Sbjct: 64 YDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIG 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG++ A F+ +WK A +DAKT LQEWA +K P Y + +SGPD Sbjct: 124 AIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPD 183 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H+P FTV V I+ +K+ AEQ AA+ +L + Sbjct: 184 HNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAK 221 >gi|213018872|ref|ZP_03334680.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995823|gb|EEB56463.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 233 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 80/219 (36%), Positives = 125/219 (57%), Gaps = 4/219 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63 T+ K I Y F + ++LE+ALTH S++ E SYERLEFLGD +L +++S +LF F Sbjct: 10 TISKVINYKFTDYAILEEALTHPSVNKRNSEDQVVSYERLEFLGDSVLNMVVSVMLFKMF 69 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 KEG L+ R LV T + VA+E++L +FI +++ R + + +E+LI Sbjct: 70 PEEKEGALAKRKTDLVCGSTIANVAKEIELGNFIIMNNSERCNGGKCNLKNLENSLEALI 129 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+Y+DGG+E F+ ++W++ A +D KT LQEW P+Y++ ++GP Sbjct: 130 GAIYIDGGLESVEKFIIRHWEKLAKDILDPPQDPKTSLQEWTQRNKLPLPKYELVKQTGP 189 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H+P FT+ V I SK+ AEQ AA +L++ Sbjct: 190 AHNPEFTISVCIESYDKVSACAPSKKIAEQKAAELILEK 228 >gi|190571469|ref|YP_001975827.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|238056573|sp|B3CMS0|RNC_WOLPP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|190357741|emb|CAQ55192.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 230 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 80/219 (36%), Positives = 125/219 (57%), Gaps = 4/219 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63 T+ K I Y F + ++LE+ALTH S++ E SYERLEFLGD +L +++S +LF F Sbjct: 7 TISKVINYKFTDYAILEEALTHPSVNKRNSEDQVVSYERLEFLGDSVLNMVVSVMLFKMF 66 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 KEG L+ R LV T + VA+E++L +FI +++ R + + +E+LI Sbjct: 67 PEEKEGALAKRKTDLVCGSTIANVAKEIELGNFIIMNNSERCNGGKCNLKNLENSLEALI 126 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+Y+DGG+E F+ ++W++ A +D KT LQEW P+Y++ ++GP Sbjct: 127 GAIYIDGGLESVEKFIIRHWEKLAKDILDPPQDPKTSLQEWTQRNKLPLPKYELVKQTGP 186 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H+P FT+ V I SK+ AEQ AA +L++ Sbjct: 187 AHNPEFTISVCIESYDKVSACAPSKKIAEQKAAELILEK 225 >gi|4378851|gb|AAD19719.1| ribonuclease III [Zymomonas mobilis subsp. mobilis ZM4] Length = 222 Score = 148 bits (373), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 74/190 (38%), Positives = 112/190 (58%), Gaps = 3/190 (1%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + +L +A+TH S +S Y+RLEFLGDR+LGL+I+ L++ F EG+LS R NSL Sbjct: 19 DPALFLRAMTHPSHGNS---DYQRLEFLGDRVLGLVIANWLYDLFPREPEGKLSRRLNSL 75 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 VS +C+ +AR + L ++R+ R D + ++ DV+E++I A++L+ GIE AG Sbjct: 76 VSGASCASIARIVGLPQWLRLGKQARDDGAAASDNVLGDVMEAMIGAIFLESGIEAAGKL 135 Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + KYW + K+ LQEWA A P Y++ R+GP H+P FT+ V I+G+ Sbjct: 136 IHKYWAPLVTGQESAPKHPKSALQEWAAAHNRRPPVYEIVSRTGPQHNPCFTIQVSIAGV 195 Query: 199 APAQGMDCSK 208 A SK Sbjct: 196 GEASAEGSSK 205 >gi|58698421|ref|ZP_00373332.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae] gi|58535076|gb|EAL59164.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae] Length = 232 Score = 147 bits (372), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 122/218 (55%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 + K I Y F N ++LE+ALTH S++ + SYERLEFLGD +L +++S LF F Sbjct: 8 ISKIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVSATLFKLFP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 KEG L+ R LV T + VA+E+ L SFI +++ R + + +E+LI Sbjct: 68 EEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCNGGRCNLKNLENSLEALIG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+Y+DGG+E F+ +YW++ A +D KT LQEW PEY++ ++GP Sbjct: 128 AIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQKNKLPLPEYELVKQTGPA 187 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H+P FT+ V I SK+ AEQ AA +L++ Sbjct: 188 HNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEK 225 >gi|58617572|ref|YP_196771.1| ribonuclease III [Ehrlichia ruminantium str. Gardel] gi|75432734|sp|Q5FGH0|RNC_EHRRG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|58417184|emb|CAI28297.1| Ribonuclease III [Ehrlichia ruminantium str. Gardel] Length = 227 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 83/218 (38%), Positives = 124/218 (56%), Gaps = 2/218 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + K I Y F N LL +ALTH S+ + +YERLEFLGD +L L++S +LFN F Sbjct: 4 NAISKIIKYDFKNTQLLNEALTHPSVLSKDNNNFNYERLEFLGDAVLNLVVSEMLFNIFP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +LV ++A+ ++L FI +S R + ++ + +E+LI Sbjct: 64 YDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIG 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG++ A F+ +WK A +DAKT LQEWA +K P Y + +SGPD Sbjct: 124 AIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPD 183 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H+P FTV V I+ +K+ AEQ AA+ +L + Sbjct: 184 HNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAK 221 >gi|326402425|ref|YP_004282506.1| ribonuclease III [Acidiphilium multivorum AIU301] gi|325049286|dbj|BAJ79624.1| ribonuclease III [Acidiphilium multivorum AIU301] Length = 221 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/215 (39%), Positives = 127/215 (59%), Gaps = 3/215 (1%) Query: 10 EKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E +G+ FA LL +ALTH S++ S ERLEF+GDR+LGLLI+ L F +E Sbjct: 6 EALLGHRFARPDLLAQALTHRSAVGQGGLGSNERLEFIGDRVLGLLIAEWLIERFPHERE 65 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L R LVS ++ +++A +A + VS + ++ AD +E+LI ALYL Sbjct: 66 GGLGPRLAHLVSRQSLAEIAEHGGIAGLLSVSPGESRRGVRNRATVLADALEALIGALYL 125 Query: 129 DGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 DGG+E A F+ + + R + +D KT LQE+A A+ V P Y++ R+GP H P Sbjct: 126 DGGLEPARLFIRRIFAPRIDGQPSAPPKDPKTALQEYALARGPVLPAYELVERTGPSHAP 185 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 RF + V ++G A A+G+ +KR AEQ AA ++L++ Sbjct: 186 RFRIRVTVAGRA-AEGLAGTKREAEQNAARDLLEQ 219 >gi|254455346|ref|ZP_05068775.1| ribonuclease III [Candidatus Pelagibacter sp. HTCC7211] gi|207082348|gb|EDZ59774.1| ribonuclease III [Candidatus Pelagibacter sp. HTCC7211] Length = 220 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/218 (38%), Positives = 122/218 (55%), Gaps = 3/218 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y +LEK+I F N +LL ++LTH S H+ ++ E++EFLGDR+LGL+I+ L + Sbjct: 4 NYQSLEKKINIKFKNTNLLIQSLTHKS--HNSLKNNEKIEFLGDRVLGLVIAKKLLEIYP 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 KEG L +F SLV+ TC ++A+ ++L +I ++ +L I +D E+LI Sbjct: 62 DEKEGILDKKFASLVNKRTCLEIAKNINLEKYI-LTFNLNNKKIKIEDKIISDCCEALIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 ALYLD G+ + + WK KS + DAKT+LQE A F P YK+ +GP Sbjct: 121 ALYLDKGLNITEKIILDLWKNHIKKSVVTQIDAKTKLQELALKNFKKLPIYKLISNTGPR 180 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H P F V V++ + SK+ AEQ AA E LK Sbjct: 181 HKPLFKVGVKLPNTKYFIALGKSKKDAEQNAAIECLKN 218 >gi|330993372|ref|ZP_08317307.1| Ribonuclease 3 [Gluconacetobacter sp. SXCC-1] gi|329759402|gb|EGG75911.1| Ribonuclease 3 [Gluconacetobacter sp. SXCC-1] Length = 258 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 123/230 (53%), Gaps = 15/230 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--------------SYERLEFLGDRILGLL 54 LE +GY F LL +ALTH S +H S ERLEF+GDR+LGL+ Sbjct: 14 LEACLGYHFTRPELLLRALTHRSAAHERSGNRRTRQNVATRGAGSNERLEFIGDRVLGLV 73 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ++ L F + +EG L R LVS ++VA + L S + V+ + M ++ Sbjct: 74 MAEWLLERFPTEQEGALGPRHAHLVSRTVLAEVAHAMALQSALDVAEHEARAGVRQMANV 133 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 AD VE+++ A+YLDGG++ A FV + W+ + + +D KT LQEW + P Sbjct: 134 LADAVEAILGAIYLDGGLDPARAFVRRMWQDAIVAQARPPKDPKTALQEWVLGRGLPLPR 193 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 Y+V GP H PRF + V+ G QG+ SKRAAE AAA++L++ G Sbjct: 194 YRVVSAEGPSHAPRFVIAVDAQGKT-GQGVAGSKRAAESDAAADLLRQLG 242 >gi|111073612|emb|CAL29457.1| Ribonuclease III [Wolbachia endosymbiont of Onchocerca volvulus] Length = 243 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 81/213 (38%), Positives = 118/213 (55%), Gaps = 4/213 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 T+ + I Y F N S+L++ALTH S+ S + E+YERLEFLGD IL +++ST+LF F Sbjct: 15 TISEIINYRFKNYSILKEALTHPSLNKRNSKNQIENYERLEFLGDSILNMVVSTILFKLF 74 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 KEG L+ R LV T + VA+ + L FI + + R + + + +E+LI Sbjct: 75 PKEKEGRLAKRKTDLVCGSTIANVAKVIKLGDFIIMDNSERCNGGKYNLKNLENALEALI 134 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+Y+DGG FV +YW++ A +D KT LQEW P+Y++ ++GP Sbjct: 135 GAIYIDGGFRNVERFVTQYWEKLAKYMLNPPQDPKTSLQEWTQKNKLPLPKYELKKQTGP 194 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 H+P FT+ V I SK+ AEQ AA Sbjct: 195 AHNPEFTISVYIKNYGRVSACASSKKVAEQKAA 227 >gi|288958023|ref|YP_003448364.1| ribonuclease III [Azospirillum sp. B510] gi|288910331|dbj|BAI71820.1| ribonuclease III [Azospirillum sp. B510] Length = 261 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 128/227 (56%), Gaps = 10/227 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI---------SHSYQE-SYERLEFLGDRILGLLISTL 58 L + +G+ F+N +LL A+TH S+ H +YERLEFLGDR++GL+++ Sbjct: 31 LARALGHEFSNPTLLCDAVTHPSLMGLERTGRKGHKGPGIAYERLEFLGDRVVGLVVAQW 90 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L + +EG L+ R +LV E+ +VA + L +++R+S + +I D Sbjct: 91 LLERYPDEREGALAKRHAALVRRESLGRVADAIGLGAYLRLSPAEAQSGGRENRTILGDA 150 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+++ A+YLDGG+E FV + K+ D+KT LQEWA + P Y++T Sbjct: 151 CEAVLGAMYLDGGLEPVTRFVRQALAGEIDKATPPPLDSKTTLQEWAQGRGKPLPRYELT 210 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 RSGP H+P F V V ++G+ P G SKR AE+ AA+ +L++ G+ Sbjct: 211 ERSGPAHEPLFVVAVHVAGMDPVSGSGSSKRIAEKKAASALLRQVGV 257 >gi|209964796|ref|YP_002297711.1| ribonuclease III [Rhodospirillum centenum SW] gi|209958262|gb|ACI98898.1| ribonuclease III [Rhodospirillum centenum SW] Length = 236 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 88/219 (40%), Positives = 119/219 (54%), Gaps = 3/219 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 S LE +GY F +R LL +ALTH S + + YERLEFLGDR+LGL+I+ L F Sbjct: 12 SELETGLGYHFRHRDLLVQALTHPSLGGVERNAGRGYERLEFLGDRVLGLVIAEWLLERF 71 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG L+ R +LV AE + VA + L F+R++ R +I AD E++I Sbjct: 72 PAEAEGALARRHTALVRAEALTVVAETIGLGPFLRLAPSERDSGGQAKPAILADACEAVI 131 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++ DGG+E A T + W +D KT LQEWA + P Y+ R GP Sbjct: 132 GAIFQDGGLEPARTLIRTRWTPLIEADLSPPQDPKTALQEWALGRGRPLPAYETLSREGP 191 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 DH P F V V + G PA SKRAAE+ AA +L++ Sbjct: 192 DHAPVFRVRVRVEGAEPATATGPSKRAAEKAAAEALLRQ 230 >gi|260576288|ref|ZP_05844280.1| ribonuclease III [Rhodobacter sp. SW2] gi|259021556|gb|EEW24860.1| ribonuclease III [Rhodobacter sp. SW2] Length = 231 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 81/190 (42%), Positives = 110/190 (57%), Gaps = 12/190 (6%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 RIG+ F LL +A+THSSIS + +RLEFLGDR+LGL+++ L +A EG+L Sbjct: 13 RIGHVFRQPELLLRAVTHSSISSKTRPDNQRLEFLGDRVLGLVMAEALLTADTAASEGQL 72 Query: 72 SVRFNSLVSAETCSQVARELDLASFIR------VSSDLRKDVCSFMTSIQADVVESLIAA 125 + RFN+LV E C+ VAR+L L ++ +S RKD ++ D +E++IAA Sbjct: 73 APRFNALVRKEACADVARDLGLGEVMKLGRSEMMSGGRRKD------ALLGDALEAVIAA 126 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +YLD G + A V + W R RDAKT LQEWA A+ P Y R GPDH Sbjct: 127 VYLDSGFDAARGLVLRLWGGRIGAVQSDARDAKTSLQEWAQARGLPPPAYIELGRDGPDH 186 Query: 186 DPRFTVVVEI 195 P+FTV V + Sbjct: 187 QPQFTVEVRL 196 >gi|148259270|ref|YP_001233397.1| ribonuclease III [Acidiphilium cryptum JF-5] gi|146400951|gb|ABQ29478.1| RNAse III [Acidiphilium cryptum JF-5] Length = 221 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 84/215 (39%), Positives = 126/215 (58%), Gaps = 3/215 (1%) Query: 10 EKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E +G+ FA LL +ALTH S++ S ERLEF+GDR+LGLLI+ L F +E Sbjct: 6 EALLGHRFARPDLLAQALTHRSAVGQGGLGSNERLEFIGDRVLGLLIAEWLIERFPHERE 65 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L R LVS ++ +++A +A + VS + ++ AD +E+LI ALYL Sbjct: 66 GGLGPRLAHLVSRQSLAEIAEHGGIAGLLSVSPGESRRGVRNRATVLADALEALIGALYL 125 Query: 129 DGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 DGG+E A F+ + + R + +D KT LQE+A A+ V P Y++ R+GP H P Sbjct: 126 DGGLEPARLFIRRIFAPRIDGQPSAPPKDPKTALQEYALARGPVLPAYELVERTGPSHAP 185 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 RF + V ++G A+G+ +KR AEQ AA ++L++ Sbjct: 186 RFRIRVTVAGRT-AEGLAGTKREAEQNAARDLLEQ 219 >gi|83593187|ref|YP_426939.1| RNAse III [Rhodospirillum rubrum ATCC 11170] gi|83576101|gb|ABC22652.1| RNAse III [Rhodospirillum rubrum ATCC 11170] Length = 221 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 83/216 (38%), Positives = 119/216 (55%), Gaps = 2/216 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L+ + + F + +LL +ALTH S + SYERLEFLGDR+LGL+++ +L+ F + Sbjct: 6 NALQIALDHRFTDPALLARALTHRS--REGRPSYERLEFLGDRVLGLVVAEMLYARFPTE 63 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ R SLV +T ++VA+ + L + +S + F S+ DV E+++ AL Sbjct: 64 DEGALARRHASLVRQDTVARVAQSVGLGELMELSRGEEELGGQFNPSLLCDVCEAVLGAL 123 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +LDGG A FV+ W + +DAKT LQEWA + P Y V R GP H Sbjct: 124 HLDGGYAKAQRFVEARWAPLMAEDLTPPKDAKTALQEWAQGRGLPLPTYAVEGRDGPPHK 183 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P FTV V + + SKR AEQ AA +L R Sbjct: 184 PMFTVSVTVKDNGSESALGASKRLAEQAAAQRLLDR 219 >gi|159042756|ref|YP_001531550.1| ribonuclease III [Dinoroseobacter shibae DFL 12] gi|189043308|sp|A8LLD9|RNC_DINSH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157910516|gb|ABV91949.1| ribonuclease III [Dinoroseobacter shibae DFL 12] Length = 229 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 82/204 (40%), Positives = 117/204 (57%), Gaps = 12/204 (5%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 RIG+ F LL +ALTH+S S + + +RLEFLGDR+LGL+++ L A+EG+L Sbjct: 13 RIGHRFDRPELLVRALTHASRSTAGRSDNQRLEFLGDRVLGLVMAEALLEADPQAREGQL 72 Query: 72 SVRFNSLVSAETCSQVARELDLASFIR------VSSDLRKDVCSFMTSIQADVVESLIAA 125 + R+N+LV ETC++VARE+ L +R ++ RKD ++ D +E++IAA Sbjct: 73 APRYNALVRKETCAEVAREIGLGDVLRLGRSEMLTGGRRKD------ALLGDGMEAVIAA 126 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +Y D G E A + + W +R RD KT LQEWA A+ P Y + RSGPDH Sbjct: 127 VYRDAGFEAAKALILRLWGKRIGAVEADARDPKTALQEWAQARGLPPPAYIESARSGPDH 186 Query: 186 DPRFTVVVEISGLAPAQGMDCSKR 209 P FT+ + A A+ SKR Sbjct: 187 APVFTISARLETGACAEAQAGSKR 210 >gi|68171854|ref|ZP_00545186.1| Ribonuclease III [Ehrlichia chaffeensis str. Sapulpa] gi|88658070|ref|YP_507839.1| ribonuclease III [Ehrlichia chaffeensis str. Arkansas] gi|123492713|sp|Q2GFE4|RNC_EHRCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|67998723|gb|EAM85443.1| Ribonuclease III [Ehrlichia chaffeensis str. Sapulpa] gi|88599527|gb|ABD44996.1| ribonuclease III [Ehrlichia chaffeensis str. Arkansas] Length = 226 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 120/219 (54%), Gaps = 6/219 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ K I Y F N LL +ALTH S+ + + +YERLEFLGD +L ++IS +LFN F Sbjct: 4 SISKIIKYNFKNPQLLNEALTHPSLVSKDTLKFNYERLEFLGDAVLNIVISEMLFNIFPK 63 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA--DVVESLI 123 EG L+ + +LV +VA+ ++L FI +S R C + + + + +E+LI Sbjct: 64 DTEGNLAKKKTALVCGNKLVEVAQSINLGQFIMMSDGER--ACGGINNFRNLENALEALI 121 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG A F+ +W+ A +DAKT LQE K P Y +SGP Sbjct: 122 GAIYLDGGFTAAQDFIYLFWEHSATHMNVPPQDAKTILQELVQGKRLPAPAYHTIDKSGP 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 DH+P FTV V I Q +K+ AEQ AA+ +L + Sbjct: 182 DHNPTFTVEVRIPSYQAIQATGHNKKLAEQKAASLMLNQ 220 >gi|84500562|ref|ZP_00998811.1| Ribonuclease III [Oceanicola batsensis HTCC2597] gi|84391515|gb|EAQ03847.1| Ribonuclease III [Oceanicola batsensis HTCC2597] Length = 226 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 76/198 (38%), Positives = 111/198 (56%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 RIG+ F LL +++THSS+S ++ +RLEFLGDR+LGL+++ L +A EG+L Sbjct: 13 RIGHDFRRPELLVQSVTHSSVSSPTRDDNQRLEFLGDRVLGLVMAEALLASDRAASEGQL 72 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + RFN+LV E C+ VARE+ L + +++ + ++ D +E++IAA+YLDGG Sbjct: 73 APRFNALVRKEACADVAREVGLGAVLKLGRSEQLSGGRRKQALLGDAMEAVIAAVYLDGG 132 Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 A + + W R + RDAKT LQEWA + P Y R GPDH P F + Sbjct: 133 FAAARDMILRLWGARVAQVDVDARDAKTALQEWAQGRGLPPPSYIEVAREGPDHAPEFRI 192 Query: 192 VVEISGLAPAQGMDCSKR 209 + AQ SKR Sbjct: 193 EARLVTGETAQASAGSKR 210 >gi|296283699|ref|ZP_06861697.1| ribonuclease III [Citromicrobium bathyomarinum JL354] Length = 223 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 116/211 (54%), Gaps = 2/211 (0%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 G+A + +L +ALTH S+ Y+RLEFLGDR+LGL I+ LF + +SA EG L+ Sbjct: 15 GFAARDEALWNEALTHGSLGEG--RDYQRLEFLGDRVLGLAIAEWLFENQNSASEGTLAQ 72 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 R N+LVS C++VAR + + +R+ R+D + ++I DV+ESL+ A + G E Sbjct: 73 RLNALVSKGACAKVARSIGVPDHLRLGRQAREDGGAQSSNILGDVMESLLGAQLREDGFE 132 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 A V W+ + K+ LQEWA PEY + RSGPDH RFTV V Sbjct: 133 SARALVRALWRDAVEGDAGRAKHPKSALQEWAAGNRRRPPEYALIDRSGPDHAARFTVRV 192 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + + A+ SK+ AE AA +++ G Sbjct: 193 SVKNVGDAEATANSKQEAETAAAKAFMEQYG 223 >gi|255264048|ref|ZP_05343390.1| ribonuclease III [Thalassiobium sp. R2A62] gi|255106383|gb|EET49057.1| ribonuclease III [Thalassiobium sp. R2A62] Length = 226 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 73/186 (39%), Positives = 108/186 (58%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+G+ F +LL +A+TH+S+S ++ +RLEFLGDR+LGL+++ L A EG Sbjct: 11 EGRLGHRFETPALLVQAVTHASMSSPNRDDNQRLEFLGDRVLGLVMAEALLAADPMAPEG 70 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 L+ R+N+LV E C+ VARE+D+ + +++ K ++ D +E++IAA+YLD Sbjct: 71 ILAPRYNALVRKEACADVAREVDVGAVLKLGRSEMKSGGRRKLALLGDAMEAVIAAVYLD 130 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 G E A V + W R RDAKT LQEWA + P Y R+GPDH P F Sbjct: 131 AGFEAAREMVLRLWGTRIHTVKADARDAKTALQEWAQGRGEGPPNYTEVSRTGPDHAPIF 190 Query: 190 TVVVEI 195 + V + Sbjct: 191 EIEVRL 196 >gi|296115041|ref|ZP_06833683.1| ribonuclease III [Gluconacetobacter hansenii ATCC 23769] gi|295978378|gb|EFG85114.1| ribonuclease III [Gluconacetobacter hansenii ATCC 23769] Length = 255 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 77/208 (37%), Positives = 108/208 (51%), Gaps = 16/208 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----------------SYERLEFLGDR 49 + +E +GY F N +LL +ALTH S +H S ERLEF+GDR Sbjct: 22 FERIEAYVGYCFRNAALLHEALTHRSAAHQRSSAIGRRTRQSVARRGAGSNERLEFIGDR 81 Query: 50 ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 +LGLL++ L F +EG L R LVS + +A ++ L S + V+ + Sbjct: 82 VLGLLMAEWLLERFPDEQEGALGPRHAHLVSRAVLAHIAEDMALPSALDVAEHEARAGVR 141 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 M ++ AD VE+++ A+YLDGG+E A FV + W + + +D KT LQEW A+ Sbjct: 142 QMANVLADAVEAILGAIYLDGGLEPARAFVRRAWNNAIVAQARPPKDPKTALQEWVLARG 201 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISG 197 P YKV GP H PRF + VE SG Sbjct: 202 LPLPVYKVVSTDGPSHAPRFVISVEASG 229 >gi|317131320|ref|YP_004090634.1| ribonuclease III [Ethanoligenens harbinense YUAN-3] gi|315469299|gb|ADU25903.1| ribonuclease III [Ethanoligenens harbinense YUAN-3] Length = 226 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 88/219 (40%), Positives = 124/219 (56%), Gaps = 9/219 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LEK +GY FA++SLLE ALTHSS ++ ++ S ERLEFLGD +LG++ + L+ H Sbjct: 5 LEKNLGYTFADKSLLENALTHSSYANEMKKHSCGSNERLEFLGDAVLGIISAEYLYFHHT 64 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ S+V + AR ++L ++R+ +SI AD E++IA Sbjct: 65 RVPEGELTRLRASMVCERSLQGFARTVELGRWLRLGRGEENTGGRERSSILADAFEAVIA 124 Query: 125 ALYLDGGIEVAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+Y+DGG A FV ++ + L++G RRD KTELQE G EY + S Sbjct: 125 AIYIDGGFPAAKRFVTRFADSFFAAHLENG--RRDYKTELQEIVQKNHGEKLEYVLVGES 182 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDHD +F V V ++ G SK+ AEQ+AA E L Sbjct: 183 GPDHDKQFLVEVHLNNNCIGAGRGGSKKEAEQMAAREAL 221 >gi|332653520|ref|ZP_08419265.1| ribonuclease III [Ruminococcaceae bacterium D16] gi|332518666|gb|EGJ48269.1| ribonuclease III [Ruminococcaceae bacterium D16] Length = 226 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 83/206 (40%), Positives = 119/206 (57%), Gaps = 3/206 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 +TLE+++GY F NR LLE ALTHSS ++ + +S ERLEFLGD ILG++++ L+ Sbjct: 2 TTLEEKLGYQFQNRELLENALTHSSCANESRGKLQSNERLEFLGDSILGMVVADHLYRGH 61 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EGEL+ +LV E+ +VA+ LDL S++ + SIQAD VE+++ Sbjct: 62 PDLPEGELTRVRAALVCEESLVEVAQALDLGSYLLLGKGEEAGGGRTRPSIQADAVEAVL 121 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AA+YLDGGI A + KY R ++ RD KT LQE + G +Y++ GP Sbjct: 122 AAVYLDGGIGSARKIIQKYILCREIEGITSPRDYKTALQELVQRESGQVLKYRLVGSQGP 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 DH RF V V+++G G SK+ Sbjct: 182 DHAKRFFVDVDLNGEPVGSGEGHSKK 207 >gi|224582877|ref|YP_002636675.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467404|gb|ACN45234.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 245 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 20 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 77 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ + P Y V Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL+ P G S+R AEQ AA +VLK+ Sbjct: 197 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQVLKK 241 >gi|327399771|ref|YP_004340640.1| Ribonuclease 3 [Hippea maritima DSM 10411] gi|327182400|gb|AEA34581.1| Ribonuclease 3 [Hippea maritima DSM 10411] Length = 234 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/216 (37%), Positives = 124/216 (57%), Gaps = 2/216 (0%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E+R+GY F N+ LL++ALTH S +S ERLEFLGD +L L+++ L N++ + E Sbjct: 13 FEERLGYTFKNKELLKRALTHRSYVKDKAKSNERLEFLGDAVLELVVTEFLINNYKNIDE 72 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS + V+ +T S++AR+L+L+ I V +K+ + SI D E+++ A+YL Sbjct: 73 GKLSKIRAASVNTKTLSKLARKLELSDQILVGRSEKKEGITNNDSILEDAFEAIVGAIYL 132 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 DGG++ A FV+ K A+ D KT LQE +FG PEY + G +H+ Sbjct: 133 DGGLDKARRFVEHMLKDTIIAIVENGIIFDYKTHLQEITQKQFGCLPEYVIVKEDGQEHN 192 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F V I G+ G+ SK+ AE+ AA E +K+ Sbjct: 193 KTFYCDVMIKGVKYGFGIGKSKKDAEKNAAKEAVKK 228 >gi|90101642|sp|Q57LD0|RNC_SALCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 226 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD +E Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTME 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL+ P G S+R AEQ AA +VLK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQVLKK 222 >gi|62181146|ref|YP_217563.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128779|gb|AAX66482.1| RNase III, ds RNA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715636|gb|EFZ07207.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 245 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 20 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD +E Sbjct: 77 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTME 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ + P Y V Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL+ P G S+R AEQ AA +VLK+ Sbjct: 197 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQVLKK 241 >gi|260771275|ref|ZP_05880202.1| ribonuclease III [Vibrio furnissii CIP 102972] gi|260613872|gb|EEX39064.1| ribonuclease III [Vibrio furnissii CIP 102972] Length = 225 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 122/219 (55%), Gaps = 6/219 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE ++GY F N L+ ALTH S + + E RLEFLGD IL +I+ L++ F Sbjct: 6 SRLETKLGYQFNNAELISLALTHRSANGKHNE---RLEFLGDSILSFVIADDLYHRFPKV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 63 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD IEVA V +++ R A+K G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSDIEVARATVLSWYQSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 H+ FTV +I+G+ AP G S+R AEQ AA L++ Sbjct: 183 HNQEFTVACDIAGIGAPVIGKGTSRRKAEQAAAETALEQ 221 >gi|326203626|ref|ZP_08193490.1| ribonuclease III [Clostridium papyrosolvens DSM 2782] gi|325986446|gb|EGD47278.1| ribonuclease III [Clostridium papyrosolvens DSM 2782] Length = 236 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 R S LE IG+ F N+ ++ A+THSS ++ + + ERLEFLGD +LGL+IS LF Sbjct: 9 RISELENIIGHNFNNKDIIFAAITHSSYANEKKAKKLKYNERLEFLGDSVLGLVISEYLF 68 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EGELSV +V + SQ A ++ L ++ + S+ +D E Sbjct: 69 QKKPNLPEGELSVTRAKIVCENSLSQCATDISLGKYLLLGKGEELSGGREKISLLSDAFE 128 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ALY+DGG E A FV KY + R+ GK D KT+LQE Y VT Sbjct: 129 ALIGALYIDGGFETAKGFVHKYMDKIIRSCIEGKLFYDYKTQLQELVQQNGEQQISYSVT 188 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + GPDH+ F V+I+G+ QG SK+ AEQ AA + L Sbjct: 189 DQFGPDHNKTFVTEVKINGVTQGQGKGHSKKEAEQNAAKDALNN 232 >gi|119774017|ref|YP_926757.1| ribonuclease III [Shewanella amazonensis SB2B] gi|189043345|sp|A1S3Y1|RNC_SHEAM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|119766517|gb|ABL99087.1| RNAse III [Shewanella amazonensis SB2B] Length = 226 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 87/216 (40%), Positives = 127/216 (58%), Gaps = 6/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + +GY F++ LLE+ALTH S S+ + E RLEFLGD IL ++IS LF+ F A E Sbjct: 10 LCRTLGYEFSDIRLLEQALTHRSASNQHNE---RLEFLGDSILSIVISDALFHQFPKATE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV +T + +A+E L ++ + K SI AD VE++I A+YL Sbjct: 67 GDLSRMRATLVRGDTLAVIAKEFKLGDYLNLGPGELKSGGFRRESILADAVEAIIGAVYL 126 Query: 129 DGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D +E + + +++ R +K G ++DAKT LQE+ PEY+VT G HD Sbjct: 127 DADLETCRSLLLGWYETRLADIKPGVGQKDAKTLLQEYLQGMKKPLPEYQVTQVEGEAHD 186 Query: 187 PRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 FTV ++ LA A G+ S+R AEQ+AAA+VL+ Sbjct: 187 QTFTVECRVTDLADAVVGVGSSRRKAEQMAAAQVLE 222 >gi|326794405|ref|YP_004312225.1| ribonuclease 3 [Marinomonas mediterranea MMB-1] gi|326545169|gb|ADZ90389.1| Ribonuclease 3 [Marinomonas mediterranea MMB-1] Length = 227 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 94/225 (41%), Positives = 126/225 (56%), Gaps = 7/225 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS+L Y L +RIGY FA+ LLE ALTH S ++ ERLEFLGD IL +I+ LF Sbjct: 1 MSSL-YQKLCRRIGYFFADLGLLELALTHRSYG---GKNNERLEFLGDSILNYVIAEDLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F AKEGELS SLV +T +++ARE L F+++ + K SI AD VE Sbjct: 57 HRFPKAKEGELSRLRASLVKGDTLAELAREFQLGDFLKLGAGELKSGGFRRDSILADTVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +I A+YLD G++ + +++K R A +DAKT LQE+ A+ P+Y+V Sbjct: 117 GIIGAMYLDAGMDTCKNQILEWYKTRLDATSLNVVTKDAKTRLQEYLQARKHGLPQYEVV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 G HD F V I A +G S+R AEQ AAAE L + Sbjct: 177 NIDGEPHDQTFFVHCHIEIFDQAVEGKGNSRRIAEQNAAAEALSQ 221 >gi|254452330|ref|ZP_05065767.1| ribonuclease III [Octadecabacter antarcticus 238] gi|198266736|gb|EDY91006.1| ribonuclease III [Octadecabacter antarcticus 238] Length = 197 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 78/191 (40%), Positives = 108/191 (56%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 +S ++ +RLEFLGDR+LGL++S L +A EG L+ RFN+LV ETC+ VAR++ Sbjct: 1 MSTPNRDDNQRLEFLGDRVLGLVMSEALLQADVNAPEGLLAPRFNALVRKETCADVARQI 60 Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 DL + +++ ++ AD +E++IAA+Y+D G +VA V W R Sbjct: 61 DLGAVLKLGRSEMLTGGRRKEALLADAMEAVIAAVYIDAGFDVARERVVALWGDRISNVE 120 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 + RD KT LQEWA + P Y T RSGPDH P FT+ V + A SKR A Sbjct: 121 EDARDPKTALQEWAQGQGEPPPSYIETARSGPDHAPIFTIEVRLHSGATDTATAPSKRQA 180 Query: 212 EQVAAAEVLKR 222 EQ AA +L R Sbjct: 181 EQAAAKSLLDR 191 >gi|78223520|ref|YP_385267.1| ribonuclease III:double-stranded RNA binding [Geobacter metallireducens GS-15] gi|90101627|sp|Q39T82|RNC_GEOMG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|78194775|gb|ABB32542.1| RNAse III [Geobacter metallireducens GS-15] Length = 246 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 119/223 (53%), Gaps = 7/223 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSS-ISHSYQES----YERLEFLGDRILGLLISTLLFN 61 + LE IGY F NR L +ALTH S ++ E ERLEFLGD +LGLL+ +LF Sbjct: 17 TELEAGIGYRFVNRQFLAEALTHRSWVNERRGEEGIRDNERLEFLGDAVLGLLVGKMLFA 76 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F ++EG L+ SLV ET + +A L + + + S+ A+ E+ Sbjct: 77 RFPQSREGVLARMKASLVGEETLAALASARGLGRHLLLGRGEERSGGRERRSLLANTYEA 136 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+AA+YLDGG+ V++ + + SG RD KTE QE +FG P Y++ Sbjct: 137 LLAAVYLDGGLGPVERIVEQDFSPLLAGIASGATGRDFKTEFQEMVQTRFGTAPTYELIA 196 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP HD RFTV+ ++G +G SK+ AEQ AA +VL R Sbjct: 197 TDGPPHDRRFTVIAMVAGKRMGEGAGRSKKEAEQAAARQVLAR 239 >gi|89094542|ref|ZP_01167480.1| ribonuclease III [Oceanospirillum sp. MED92] gi|89081141|gb|EAR60375.1| ribonuclease III [Oceanospirillum sp. MED92] Length = 226 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 88/217 (40%), Positives = 126/217 (58%), Gaps = 6/217 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L +RIG+ F++ SL E ALTH S +++ ERLEFLGD IL +I+ L+ F A Sbjct: 6 NELARRIGHDFSDLSLFELALTHRSCG---KKNNERLEFLGDSILNFVIADDLYARFPKA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 KEGELS +V T S+VAREL L ++R+ S K SI AD VE++I A+ Sbjct: 63 KEGELSRLRARMVKGVTLSEVARELGLGDYLRLGSGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD ++ A ++ K+++QR L + +D+KT LQE+ ++ PEY++T G Sbjct: 123 YLDSDMDTARAYILKWFEQRLSTLDLNESLKDSKTRLQEFLQSRRLALPEYELTNVEGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220 H F + +SGL PA+G S+R AEQ AA L Sbjct: 183 HAQTFYIDCRVSGLNNPAKGTGSSRRQAEQEAAKNAL 219 >gi|291288904|ref|YP_003505720.1| ribonuclease III [Denitrovibrio acetiphilus DSM 12809] gi|290886064|gb|ADD69764.1| ribonuclease III [Denitrovibrio acetiphilus DSM 12809] Length = 235 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 132/229 (57%), Gaps = 6/229 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTL 58 +S++ +LE R+GY F+++S++ +ALTH S +H +++YERLEFLGD +L L+++ Sbjct: 5 VSSVDIDSLEGRLGYHFSDKSIVLEALTHRSYAHEKKNKQNYERLEFLGDAVLQLIVTEY 64 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L + + EG LS VS S++A EL L I + + + S+ D+ Sbjct: 65 LLDRYKDYDEGLLSKLRGYFVSEGFLSRIAIELKLGEHILLGKGEKASGGKYKESLLCDI 124 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEY 175 ES++AA+YLDGG A + +++ R + + F DAK+ELQ+ + KFG P+Y Sbjct: 125 FESVVAAIYLDGGYGFARDIIIRHFGSRIDEDISNSSF-VDAKSELQKISQRKFGTLPDY 183 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V GP+HD F V V++ L QG+ +K++AE+ AA L++ G Sbjct: 184 TVLDEKGPEHDKIFVVRVDVETLVSEQGIGKTKKSAEKDAAKNALRKLG 232 >gi|167645701|ref|YP_001683364.1| ribonuclease III [Caulobacter sp. K31] gi|189043302|sp|B0T3I0|RNC_CAUSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|167348131|gb|ABZ70866.1| Ribonuclease III [Caulobacter sp. K31] Length = 232 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 91/197 (46%), Positives = 123/197 (62%), Gaps = 3/197 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFD 64 + LE+RIG+ FA+R LLE ALTH+S+ +++ E LEF+GDR+LGLL + L F Sbjct: 9 ADLERRIGHTFADRKLLELALTHASVGDGAKKAGDNEVLEFIGDRVLGLLAAEALAERFP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 AKEGEL+ R N+LVS ETC++VAR ++ +R+S+ K SI A E+L+A Sbjct: 69 KAKEGELAPRLNALVSRETCARVARGAEMGPALRLSASSSKIGGRETDSILAGAAEALMA 128 Query: 125 ALYLDGGIEVA-GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ALY DGG+E+A F+D + + L + RD KT LQEWA ++ P Y V R GP Sbjct: 129 ALYRDGGLELARRVFLDLWAGEFDLANQGKPRDPKTALQEWAQSQGKPLPTYAVKDRKGP 188 Query: 184 DHDPRFTVVVEISGLAP 200 DH P FTV V + GL P Sbjct: 189 DHAPMFTVQVTVVGLDP 205 >gi|294084100|ref|YP_003550858.1| Ribonuclease III [Candidatus Puniceispirillum marinum IMCC1322] gi|292663673|gb|ADE38774.1| Ribonuclease III [Candidatus Puniceispirillum marinum IMCC1322] Length = 230 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 81/217 (37%), Positives = 119/217 (54%), Gaps = 4/217 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ L +R+ + F ++S+L +ALTH+S + + S ERLEFLGDR+LGL+++ + Sbjct: 1 MKSVDLKPLAERLAHKFNDQSVLVRALTHASFAGPTK-SNERLEFLGDRVLGLVLADFFY 59 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+LS+R ++ +V REL+LA FI V + + + S+ AD VE Sbjct: 60 GQCPDEDEGKLSLRLHADARQSKLVEVGRELELARFISVQNGM---ALAENESVIADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAA YLDGG EVA F+ YW +DAK+ LQE + P Y++ + Sbjct: 117 SLIAAHYLDGGFEVARRFILAYWALDTAAPAGTDKDAKSRLQELVMKQGLALPHYRLISK 176 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 SGPDH P V + G +++ AEQ AAA Sbjct: 177 SGPDHAPEMIYEVSVEGYDSIVASASNRKLAEQQAAA 213 >gi|222475478|ref|YP_002563895.1| ribonuclease III (rnc) [Anaplasma marginale str. Florida] gi|254995287|ref|ZP_05277477.1| ribonuclease III [Anaplasma marginale str. Mississippi] gi|255003466|ref|ZP_05278430.1| ribonuclease III [Anaplasma marginale str. Puerto Rico] gi|254807234|sp|B9KGT5|RNC_ANAMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|222419616|gb|ACM49639.1| ribonuclease III (rnc) [Anaplasma marginale str. Florida] Length = 232 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 80/210 (38%), Positives = 113/210 (53%), Gaps = 1/210 (0%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 GY F + LL +ALTH S+S+ +YERLEFLGD +L + +S +L+ F EG L+ Sbjct: 18 GYQFRDLDLLLEALTHPSLSYKSAANYERLEFLGDAVLSMTVSEMLYRLFPDDDEGCLTR 77 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + +LV ++AR + L I +S R S + +E+LI A+Y+DGG E Sbjct: 78 KRTALVRGSEVVEIARSIGLGELILMSGGERTCGGSDNPGTLENALEALIGAMYMDGGPE 137 Query: 134 VAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 +F+ K+W RA S +D KT LQEW + P YK+ +SGP+H P F V Sbjct: 138 AYRSFIHKHWLARAQHMSYTPPQDPKTALQEWVQGRGWAMPLYKLVSKSGPEHKPVFAVE 197 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V I G SK+ AEQ AA +LK+ Sbjct: 198 VSIQEHGNVLGTGSSKKLAEQEAAKLMLKK 227 >gi|114327656|ref|YP_744813.1| ribonuclease III [Granulibacter bethesdensis CGDNIH1] gi|114315830|gb|ABI61890.1| ribonuclease III [Granulibacter bethesdensis CGDNIH1] Length = 258 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 120/224 (53%), Gaps = 12/224 (5%) Query: 10 EKRIGYAFANRSLLEKALTHSS---ISHSYQE--------SYERLEFLGDRILGLLISTL 58 E + + FA R LL +ALTH S I H S ERLEF+GDR+LGL+++ Sbjct: 23 EALLSHRFARRDLLAEALTHRSAVKIMHGQTGQSLPRGAGSNERLEFVGDRVLGLVVAEW 82 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L F +EGEL R LVS + +A + L + V+ K + ++ +D Sbjct: 83 LVERFPLEQEGELGRRLAHLVSQPVLAGIAEQSGLPQILSVAPGEAKAGVRKLATVLSDA 142 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +E+LI ALYLD G++ F+ ++W+ + + +DAKT LQEWA P Y++ Sbjct: 143 MEALIGALYLDAGLDPVRQFIRRHWEPVMQRQTEPPKDAKTALQEWAQGLGLHLPTYRLA 202 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 R GP H+P F V V + G QG SKRAAEQ+AA ++L R Sbjct: 203 RREGPPHNPVFWVEV-LVGDHVGQGQAGSKRAAEQLAAQDLLGR 245 >gi|291542641|emb|CBL15751.1| RNAse III [Ruminococcus bromii L2-63] Length = 225 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 127/222 (57%), Gaps = 7/222 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFD 64 L+KRIGY F N LL +ALTHSS ++ ++ + ERLEFLGD +L +++S +F H Sbjct: 4 LQKRIGYTFKNTDLLTEALTHSSYANEHKAKHIKYNERLEFLGDAVLSIVVSDYIFKHCP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ SLV +T + A++++L ++ +S R + + SI +D E+LIA Sbjct: 64 ELPEGELTKLRASLVCEKTLFEFAKQIELGKYLVLSKGERNNGGAERPSILSDAFEALIA 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+Y+DGGI+ A + + A+K+ K ++ D KT LQE G EY + SG Sbjct: 124 AIYIDGGIDPASKHILNFVIP-AIKNSKKKKLNDYKTALQEIIQKNPGEQLEYVLVGESG 182 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH+ F V V ++ +G SK+ AEQ AA E L+ G Sbjct: 183 PDHNKHFVVEVHLNSNVIGKGGGRSKKEAEQQAAREALELMG 224 >gi|262277162|ref|ZP_06054955.1| ribonuclease III [alpha proteobacterium HIMB114] gi|262224265|gb|EEY74724.1| ribonuclease III [alpha proteobacterium HIMB114] Length = 225 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 119/212 (56%), Gaps = 1/212 (0%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +EK + F N+SL+E+A TH S S + + ERLEFLGDR+LGL+I++ L +++ E Sbjct: 9 VEKILEIKFNNKSLIEQAFTHKSKSVNINNNNERLEFLGDRVLGLVIASYLNDNYPKDSE 68 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L + SLV+ ETCS++ L++ F+ + S+ +K + I D+ ES+I A+++ Sbjct: 69 GVLDKKLASLVNKETCSKIISSLEIDRFLSL-SEAQKQNKAGNKKILGDLCESIIGAVFM 127 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 D G E F+ K WK+ + + D KT+LQE++ + P YK SGP H P Sbjct: 128 DKGFEQTKKFILKIWKENLKNTTQVFIDPKTKLQEYSLKLYKKLPVYKYISNSGPSHKPN 187 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F V V I SK+ AE AA +++ Sbjct: 188 FRVSVSIEQSKSFVATGTSKKNAETNAAKKLI 219 >gi|255004592|ref|ZP_05279393.1| ribonuclease III [Anaplasma marginale str. Virginia] Length = 232 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/210 (38%), Positives = 113/210 (53%), Gaps = 1/210 (0%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 GY F + LL +ALTH S+S+ +YERLEFLGD +L + IS +L+ F EG L+ Sbjct: 18 GYQFRDLDLLLEALTHPSLSYKSAANYERLEFLGDAVLSMTISEMLYRLFPDDDEGCLTR 77 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + +LV ++AR + L I +S R S + +E+LI A+Y+DGG E Sbjct: 78 KRTALVRGSEVVEIARSIGLGELILMSGGERTCGGSDNPGTLENALEALIGAMYMDGGPE 137 Query: 134 VAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 +F+ K+W RA S +D KT LQEW + P YK+ +SGP+H P F V Sbjct: 138 AYRSFIHKHWLARAQHMSYTPPQDPKTALQEWVQGRGWAMPLYKLVSKSGPEHKPVFAVE 197 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V I G SK+ AEQ AA +L++ Sbjct: 198 VSIQEHGNVLGTGSSKKLAEQEAAKLMLQK 227 >gi|317050765|ref|YP_004111881.1| ribonuclease III [Desulfurispirillum indicum S5] gi|316945849|gb|ADU65325.1| ribonuclease III [Desulfurispirillum indicum S5] Length = 247 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 8/225 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61 R + LE+R+GY F + LL ALTH S HS + E+ ERLEFLGD +LGL+IS L Sbjct: 10 RIAPLEERLGYVFMRKELLHTALTHRSFFHSNRKSAENNERLEFLGDSVLGLIISHYLLE 69 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + EG+LS + +V+ +T S+VARE + L ++ + SI AD +E Sbjct: 70 SFPAQSEGKLSKIRSFIVNEKTLSRVAREKIQLGRYLFIGKGEENTGGRNKASILADAME 129 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKV 177 +++AA+YLDGG+ A + + + ++S F RD KTELQE + + PEY+V Sbjct: 130 AVVAAIYLDGGLNAARNIILELMSEE-IESTVFSNRHRDYKTELQELSQGSLSLAPEYRV 188 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F V + + G SK++AEQ AA +++ Sbjct: 189 EREWGPDHQKHFAVSLYLHDQVYGHGEGTSKKSAEQKAARAAMEK 233 >gi|326387678|ref|ZP_08209284.1| ribonuclease III [Novosphingobium nitrogenifigens DSM 19370] gi|326207724|gb|EGD58535.1| ribonuclease III [Novosphingobium nitrogenifigens DSM 19370] Length = 233 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/210 (40%), Positives = 113/210 (53%), Gaps = 5/210 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS-AKEGEL 71 G+ + L +ALTH S+ + Y+RLEFLGDR+LGL ++ L H DS A EG+L Sbjct: 25 FGHEPIRQDLWHEALTHGSLGEA--RDYQRLEFLGDRVLGLAVAEWL--HGDSSAAEGKL 80 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 S R N+LVS ETC+ VAR L +A +R+ R D + +I DV+E+LI AL+L+ G Sbjct: 81 SQRLNALVSRETCADVARTLGIAPHMRLGKQARDDGGADSDNILGDVMEALIGALFLERG 140 Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 A FV + W R+ K LQEWA P Y + R GPDH FTV Sbjct: 141 FPAARDFVRRAWAAPMAAGAGQRKHPKAALQEWAAGNKRKPPIYTLVAREGPDHAATFTV 200 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V + G+ SK+ AE AA E +K Sbjct: 201 SVTVKGVGEMTARGSSKQEAETSAAREFMK 230 >gi|56417113|ref|YP_154187.1| ribonuclease III [Anaplasma marginale str. St. Maries] gi|81358903|sp|Q5P9U8|RNC_ANAMM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56388345|gb|AAV86932.1| ribonuclease III [Anaplasma marginale str. St. Maries] Length = 232 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 79/210 (37%), Positives = 112/210 (53%), Gaps = 1/210 (0%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 GY F + LL +ALTH +S+ +YERLEFLGD +L + +S +L+ F EG L+ Sbjct: 18 GYQFRDLDLLLEALTHPRLSYKSAANYERLEFLGDAVLSMTVSEMLYRLFPDDDEGCLTR 77 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + +LV ++AR + L I +S R S + +E+LI A+Y+DGG E Sbjct: 78 KRTALVRGSEVVEIARSIGLGELILMSGGERTCGGSDNPGTLENALEALIGAMYMDGGPE 137 Query: 134 VAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 +F+ K+W RA S +D KT LQEW + P YK+ +SGP+H P F V Sbjct: 138 AYRSFIHKHWLARAQHMSYTPPQDPKTALQEWVQGRGWAMPLYKLVSKSGPEHKPVFAVE 197 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V I G SK+ AEQ AA +LK+ Sbjct: 198 VSIQEHGNVLGTGSSKKLAEQEAAKLMLKK 227 >gi|114797101|ref|YP_759604.1| ribonuclease III [Hyphomonas neptunium ATCC 15444] gi|114737275|gb|ABI75400.1| ribonuclease III [Hyphomonas neptunium ATCC 15444] Length = 234 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 84/214 (39%), Positives = 119/214 (55%), Gaps = 7/214 (3%) Query: 13 IGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IG+ F + ++LE+ALTH S + + S +RLEFLGDR+L L+I+ L S E Sbjct: 17 IGFKFKDAAILERALTHPSAIPPSGDTVKLSNQRLEFLGDRVLNLIIAERLIERRQSDSE 76 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ R N LV C++ R L L FI +S S D E++IAA+Y Sbjct: 77 GDLAPRLNRLVKKGACAEAMRFLGLQRFILLSESEVAAGGHDRESTLGDACEAVIAAIYQ 136 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +GG+ A F+++ W + +D KT LQEWA + P+Y VT RSGPDH P+ Sbjct: 137 EGGLAAARKFIERAWAPQFENVPAETKDPKTLLQEWAQGQGHPLPDYVVTGRSGPDHAPQ 196 Query: 189 FTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLK 221 + V V ++ G A A G SKR AE+ AAA +L+ Sbjct: 197 YEVEVRLAVGKATATG--PSKREAERHAAALMLR 228 >gi|154500966|ref|ZP_02039004.1| hypothetical protein BACCAP_04652 [Bacteroides capillosus ATCC 29799] gi|150269990|gb|EDM97509.1| hypothetical protein BACCAP_04652 [Bacteroides capillosus ATCC 29799] Length = 223 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 122/211 (57%), Gaps = 7/211 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+++GY F NR+LLE ALTHSS + H+ +S ERLEFLGD +LG++ + L+ Sbjct: 4 LEEKLGYTFQNRALLENALTHSSYANENKHTGAQSNERLEFLGDSVLGMVTADYLYRVHP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ +LV + +VA++L+L +++++ SI AD VE+++A Sbjct: 64 DLPEGDLTRTRAALVCEGSLVEVAQQLELGTYLKLGKGEDAGGGRERPSIVADAVEAVLA 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGGI A + ++ R KSG RD KT LQE + G Y++ +GP Sbjct: 124 AVYLDGGIGSARKIIQRFILDREEEKSGS--RDYKTALQELVQRESGQVLAYRLVGSTGP 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 DH RF V VE++G G SK+ AEQ+ Sbjct: 182 DHAKRFQVEVELNGTPVGAGEGRSKKEAEQM 212 >gi|257784655|ref|YP_003179872.1| ribonuclease III [Atopobium parvulum DSM 20469] gi|257473162|gb|ACV51281.1| ribonuclease III [Atopobium parvulum DSM 20469] Length = 243 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 115/224 (51%), Gaps = 3/224 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 R + E G+ F N+ L+E ALTH S SYERLEFLGD ILG +I+T LF Sbjct: 6 RVAAAEAICGHTFINKDLIEAALTHPSAVEGKPVSASYERLEFLGDSILGAIIATELFER 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+L+ SLVS T S V+ L ++ I + + M S +V ES+ Sbjct: 66 YPDMDEGQLTRLKISLVSGHTLSIVSDTLGVSPLIVMGISEKGTGKRGMKSALENVYESI 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRS 181 + ALYLD G E FV + + R K+ LQE A+ TPEYK+ S Sbjct: 126 VGALYLDAGFEPTRDFVIRTLGPHISPTLAVRSVSPKSRLQEAVQAQGKATPEYKLIGES 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GP H P FT VV + GL +G SK+AAE AA + L R G+ Sbjct: 186 GPAHTPTFTAVVFVDGLKVGRGQGPSKKAAESEAAQDALVRLGV 229 >gi|88608789|ref|YP_506782.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama] gi|88600958|gb|ABD46426.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama] Length = 222 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 120/213 (56%), Gaps = 3/213 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ +G F N+ LL +ALTH S+ SYERLEFLGD +L L+I+++L++ F E Sbjct: 6 LQSLLGVYFKNKDLLVEALTHPSVEKC--PSYERLEFLGDAVLNLVIASMLYDLFPGDPE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS R ++L+ T + +AR+++L +IR+SS TS +V+E+L+ A++L Sbjct: 64 GRLSHRQSALICKNTLAMLARQMNLGDYIRLSSSEEAGGGRDKTSNLENVLEALVGAIFL 123 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 D G+E F+ K W A++S + K+ LQE AK P Y V RSGP H P Sbjct: 124 DAGLETVTCFIKKRWYGLAVQSDSIEPNPKSTLQELLQAKGMKPPIYNVINRSGPAHLPI 183 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F + + + G + SK+ E+ AA +L+ Sbjct: 184 FEIEIRVDG-KKRRATGKSKKLGEENAARMMLE 215 >gi|260437031|ref|ZP_05790847.1| ribonuclease III [Butyrivibrio crossotus DSM 2876] gi|292810340|gb|EFF69545.1| ribonuclease III [Butyrivibrio crossotus DSM 2876] Length = 227 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 86/217 (39%), Positives = 120/217 (55%), Gaps = 5/217 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHS-YQE---SYERLEFLGDRILGLLISTLL 59 + EK+IGYA+ N LL+ ALTHSS + Y++ + ERLEFLGD +L L +S L Sbjct: 1 MNIKEFEKKIGYAYNNVDLLKLALTHSSYGNEVYKDKLHNNERLEFLGDAVLELTVSDYL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 FN + EG LS + S+V T + ARE++L + + F SI +D + Sbjct: 61 FNEECNMPEGSLSRKRASIVCEPTLAMCAREINLPEVLFMGKGEELTGGRFRDSIVSDAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++I ++YLDGGIE A F++K+ +K + D+KT LQE A + PEY +T Sbjct: 121 EAVIGSIYLDGGIECAREFINKFILAD-IKDKQLFVDSKTILQERIQAGYKEGPEYIITG 179 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 SGPDH F V I G G +K+AAEQ AA Sbjct: 180 ESGPDHCKVFEAEVRIEGRLIGSGKGRTKKAAEQQAA 216 >gi|269958484|ref|YP_003328271.1| ribonuclease 3 [Anaplasma centrale str. Israel] gi|269848313|gb|ACZ48957.1| ribonuclease 3 [Anaplasma centrale str. Israel] Length = 249 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 79/210 (37%), Positives = 113/210 (53%), Gaps = 1/210 (0%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 GY F + LL ++LTH S+S +YERLEFLGD +L + +S +L+ F EG L+ Sbjct: 22 GYRFRDLDLLLESLTHPSLSRESAANYERLEFLGDAVLSMAVSEMLYRLFPDDDEGCLTQ 81 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + +LV ++AR + L I +SS S + +E+LI A+Y+DG E Sbjct: 82 KRTALVRGSEVVEIARSIGLGGLILMSSGEMSCGGSDNPGTLENALEALIGAMYIDGSSE 141 Query: 134 VAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 F+ ++W RA + S +D KT LQEW ++ P YK+ +SGP+H P F V Sbjct: 142 DYKNFIREHWFSRAQRMSSAPPQDPKTALQEWVQSRGWTVPLYKLVSKSGPEHKPVFAVE 201 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V I G G SK+ AEQ AA +LKR Sbjct: 202 VSIQGHGSILGTGSSKKLAEQEAAKLMLKR 231 >gi|262375526|ref|ZP_06068759.1| ribonuclease III [Acinetobacter lwoffii SH145] gi|262309780|gb|EEY90910.1| ribonuclease III [Acinetobacter lwoffii SH145] Length = 232 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S L L KRIGY F LL+ ALTH S+SH + +YERLEFLGD +LG++I+ LFN Sbjct: 6 SKLNDERLAKRIGYQFKQADLLKLALTHRSVSHKH--NYERLEFLGDSLLGMIIANYLFN 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + S EG L+ +LV E ++A +L L+ + +S+ K SI AD VE+ Sbjct: 64 AYPSENEGRLTRMRATLVRQEALGKIANDLKLSQNLILSTGELKSGGHHRESILADTVEA 123 Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +I A+Y+D G + V V K+++ ++ +D K+ LQE+ A+ P Y+V Sbjct: 124 IIGAIYVDCGDLTVLEPIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVV 183 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 G + F V +I+GL QG S+R AEQ AA++LK Sbjct: 184 DIQGDAPNQHFKVECQIAGLPTMQGEGASRRFAEQAVAADILK 226 >gi|302342152|ref|YP_003806681.1| ribonuclease III [Desulfarculus baarsii DSM 2075] gi|301638765|gb|ADK84087.1| ribonuclease III [Desulfarculus baarsii DSM 2075] Length = 237 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 122/218 (55%), Gaps = 15/218 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65 L ++G+ F++ + L++AL HSS H + S ERLEFLGD +L L+++ LF FD Sbjct: 12 LADQVGHGFSDWTALDEALRHSSFVHENPQRGPSNERLEFLGDAVLELVVTQELFLRFDQ 71 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EG+LS +S+V+ ++ AR++DL I + + TSI AD +E+++AA Sbjct: 72 ASEGQLSRARSSVVNEARLAEAARQIDLGPCILLGKGEQGQGGQEKTSILADALEAVLAA 131 Query: 126 LYLDGGIEVAGTFV-------DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +YLDGG+E A V D+ RA RRD KT LQE +TP Y+ Sbjct: 132 VYLDGGLEAARDCVLALLGPLDERVIDRAP-----RRDYKTMLQERVQEDLRLTPRYRTI 186 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 SGPDHD F+V +EI+ A G SK+ AEQ AA Sbjct: 187 DESGPDHDKTFSVSIEINDRQLAMGAGKSKKEAEQNAA 224 >gi|162147937|ref|YP_001602398.1| ribonuclease III [Gluconacetobacter diazotrophicus PAl 5] gi|209542555|ref|YP_002274784.1| Ribonuclease III [Gluconacetobacter diazotrophicus PAl 5] gi|161786514|emb|CAP56096.1| putative ribonuclease III [Gluconacetobacter diazotrophicus PAl 5] gi|209530232|gb|ACI50169.1| Ribonuclease III [Gluconacetobacter diazotrophicus PAl 5] Length = 249 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 84/231 (36%), Positives = 125/231 (54%), Gaps = 17/231 (7%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH---------SYQE-------SYERLEFLGDRI 50 +++E R+GY F LL +ALTH S +H S Q S ERLEF+GDR+ Sbjct: 14 ASVEARVGYRFRRPDLLREALTHRSAAHQRNGGGARRSRQPAARRGAGSNERLEFIGDRV 73 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 LGL+++ L F +EG L R LVS + +A ++L + V+ + Sbjct: 74 LGLVMAEWLLERFPDEQEGALGPRHAHLVSRPVLAAIAGTMNLQQALDVAEHEARAGVRQ 133 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 + ++ AD VE+++ A+YLDGG+E A FV W + + + +D KT LQEW A+ Sbjct: 134 VANVLADAVEAILGAIYLDGGLEPARRFVRAAWNEAIVAQAQPPKDPKTALQEWVLARGL 193 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P Y+ GP H PRF + V +G + A+G+ SKRAAE AAA++L+ Sbjct: 194 PLPAYRTVQMDGPSHAPRFVIAVTAAGQS-AEGIAGSKRAAESAAAADLLR 243 >gi|319789592|ref|YP_004151225.1| ribonuclease III [Thermovibrio ammonificans HB-1] gi|317114094|gb|ADU96584.1| ribonuclease III [Thermovibrio ammonificans HB-1] Length = 236 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 126/224 (56%), Gaps = 10/224 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+ +GY+F ++ LL++AL H S + E+YE LEFLGD ++GL++S L F Sbjct: 10 LERLLGYSFKDKELLKRALIHRSFAFEKDTGENYEVLEFLGDAVIGLIVSEELIKRFPEK 69 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS LVS + S++AR ++L F+ + ++ SI DV ES+ AL Sbjct: 70 SEGELSQIRAFLVSEPSLSKLARTINLGQFLYLGKGEKRTGGREKDSILCDVFESVFGAL 129 Query: 127 YLDGGIEVA-----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 YLD G E A F+ K W+ L++ +D K+ LQE ++ V P+Y+V Sbjct: 130 YLDAGFEKAKEIFKNKFLKKLWE--ILENAVTYKDFKSYLQEITQREYKVLPKYRVVKAE 187 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GP+HD FTV +++ + G SK+AAEQ AA E+LK G+ Sbjct: 188 GPEHDKTFTVECQVNDIT-TYGKGKSKKAAEQDAAREMLKALGV 230 >gi|197119571|ref|YP_002139998.1| ribonuclease III [Geobacter bemidjiensis Bem] gi|197088931|gb|ACH40202.1| ribonuclease III [Geobacter bemidjiensis Bem] Length = 232 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 127/224 (56%), Gaps = 11/224 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E R+GY F++R LL +ALTH + ++ + +RLEF GD +L L+S +L F ++ Sbjct: 12 IEGRLGYRFSDRGLLVEALTHRTYVNEAGGRDNQRLEFFGDAVLDFLLSDMLLVRFPDSR 71 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EGEL+ +LV + ++A ELDL +R+ K S+ AD E+L+AALY Sbjct: 72 EGELTRIRAALVDEASLGKIASELDLGQALRLGRGEEKGGGRQKRSLLADAFEALLAALY 131 Query: 128 LDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 LDGG++ A V+ + R L SG RDAKTELQE A G P Y++ +GP Sbjct: 132 LDGGLDPARRVVEALFAPLLSSRDLLSG---RDAKTELQETARLFKGELPRYQLKQVTGP 188 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKREG 224 DHD RFTV V + +G+ +K+ AEQ AA +LK EG Sbjct: 189 DHDKRFTVEVYLGEELMGEGVGRTKKEAEQDAARAAFLLLKGEG 232 >gi|308048449|ref|YP_003912015.1| RNAse III [Ferrimonas balearica DSM 9799] gi|307630639|gb|ADN74941.1| RNAse III [Ferrimonas balearica DSM 9799] Length = 224 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 126/225 (56%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+ +GY F + +LL +ALTH S + + E RLE+LGD +L +I+ L+ Sbjct: 1 MNNQKLTRLQDALGYQFKDIALLNQALTHRSAASQHNE---RLEYLGDAVLSFVIAEALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+++ SLV T +++ REL L I++ K SI AD VE Sbjct: 58 LRFPKVAEGDMTRMRASLVKGVTLAELGRELALGDVIKLGPGELKSGGFRRESILADAVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+YLDGGIEV + + ++ R ++ G ++D KT LQE A+ PEY+V Sbjct: 118 AILGAVYLDGGIEVCKPLILRLYQARLDIIEPGIRQKDPKTRLQEHLQARKQPLPEYEVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G H+ RFTV +S LA P G S+R AEQ AA+ VL++ Sbjct: 178 SVEGDAHNQRFTVRCSVSALAEPMIGNGSSRRKAEQDAASRVLEQ 222 >gi|319957798|ref|YP_004169061.1| rnase iii [Nitratifractor salsuginis DSM 16511] gi|319420202|gb|ADV47312.1| RNAse III [Nitratifractor salsuginis DSM 16511] Length = 226 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y LE+R+GY F N L+ +ALTH S Y ERLEFLGD +L L++ LF+ F Sbjct: 4 YHELERRLGYEFKNPQLIVEALTHKSYKKPYNN--ERLEFLGDAVLDLIVGEFLFHKFPQ 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 + EG LS SLV+ + +AR +DL +I +S + S+ ++ E++I A Sbjct: 62 SDEGVLSKIRASLVNESGFATLARAIDLGRYIYLSPAEENNQGRSKPSLLSNAFEAVIGA 121 Query: 126 LYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+E A + V D+ + + L + +D KT LQE A GVTP+Y++ S Sbjct: 122 IYLEAGLENARSIVVRLLDETYPRIDLDT--LCKDYKTALQELTQATHGVTPDYEMIGSS 179 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F V V++ G A SK+AA+Q AA L++ Sbjct: 180 GPDHRKEFEVAVKLDGETIASAKGRSKKAAQQKAAEIALQK 220 >gi|237752001|ref|ZP_04582481.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430] gi|229376568|gb|EEO26659.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430] Length = 223 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/210 (35%), Positives = 120/210 (57%), Gaps = 4/210 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 EK +GY F ++LL++ALTH S ERLEFLGD +L L+I L+N F +++E Sbjct: 7 FEKTLGYHFKAQNLLKEALTHKSAKKGTHN--ERLEFLGDAVLDLIIGEFLYNKFPNSRE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS S+V+ + +++AR L++ ++ +S+ ++ SI ++ E++I A+YL Sbjct: 65 GELSKMRASMVNEKAFAKIARYLNIGEYLFISNSEEQNNGRKKDSILSNAFEAVIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + G+++A + ++ D KT LQE AKFG TPEY + SGPDH+ Sbjct: 125 ESGLDIARNLMHNLLSAVYPSIDLNSLFYDHKTALQELTQAKFGETPEYVLLDSSGPDHN 184 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 F + V+I G A+ SK+ A+Q+ A Sbjct: 185 KNFLIGVKIQGKEFAKASGKSKKEAQQICA 214 >gi|197303071|ref|ZP_03168119.1| hypothetical protein RUMLAC_01798 [Ruminococcus lactaris ATCC 29176] gi|197297926|gb|EDY32478.1| hypothetical protein RUMLAC_01798 [Ruminococcus lactaris ATCC 29176] Length = 229 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/220 (38%), Positives = 116/220 (52%), Gaps = 5/220 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESY---ERLEFLGDRILGLLISTLLF 60 R LEK+IGY F N LLE+A+ HSS ++ + E Y ERLEFLGD +L L+ S LF Sbjct: 4 RLKELEKKIGYTFENHKLLERAMMHSSYTNEKHLEKYRCNERLEFLGDAVLELISSEYLF 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EGEL+ S+V + + AR++DL S++ + SI +D +E Sbjct: 64 GELPRVSEGELTKTRASMVCEPSLAMCARDIDLGSYLLLGKGEEATGGRMRDSITSDAME 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI A+YLDGG A F+ ++ L+ K D+KT LQE A Y++ Sbjct: 124 ALIGAIYLDGGFTSAKEFIHRFI-LTDLEDKKLFYDSKTILQEIVQANKAGNITYELVGE 182 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDH+ F V V I G G SK+AAEQ AA + + Sbjct: 183 EGPDHNKTFEVRVRIGGQPYGSGKGRSKKAAEQKAAYQAI 222 >gi|91227852|ref|ZP_01262025.1| ribonuclease III [Vibrio alginolyticus 12G01] gi|269965785|ref|ZP_06179882.1| Ribonuclease 3 [Vibrio alginolyticus 40B] gi|91188362|gb|EAS74658.1| ribonuclease III [Vibrio alginolyticus 12G01] gi|269829653|gb|EEZ83890.1| Ribonuclease 3 [Vibrio alginolyticus 40B] Length = 225 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/217 (36%), Positives = 120/217 (55%), Gaps = 6/217 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++GY F + L+ ALTH S + + E RLEFLGD IL +I+ L++ F E Sbjct: 8 LERKLGYQFQDAGLINLALTHRSANSKHNE---RLEFLGDSILSFVIADDLYHRFPKVNE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++ RE DL ++++ K SI AD VE++I A+YL Sbjct: 65 GDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D +EV V +++ R A+K G ++D KT LQE+ + P Y VT G H+ Sbjct: 125 DSDLEVVRGIVLSWYQSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHN 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 FTV E++G+ P G S+R AEQ AA L++ Sbjct: 185 QEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQ 221 >gi|42523419|ref|NP_968799.1| ribonuclease III [Bdellovibrio bacteriovorus HD100] gi|81617308|sp|Q6MLR5|RNC_BDEBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|39575625|emb|CAE79792.1| ribonuclease III [Bdellovibrio bacteriovorus HD100] Length = 234 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 120/220 (54%), Gaps = 6/220 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFD 64 +LE+R+G+ F N +LLE+ALTH S ++ + E E+LEFLGD +L L++ L+ F Sbjct: 8 SLEERVGHQFKNPALLERALTHKSFANELRNTVEHNEKLEFLGDAVLDLVVGEFLYEKFP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG LS + S+V+ E S++A E+ L +++ + + A E+++ Sbjct: 68 TDTEGGLSKKRASIVNEEVLSELALEMGLNKLMQLGKGEALTGGAQKPRLIASSFEAIVG 127 Query: 125 ALYLDGGIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 ALYLDGG EVA +F+ + + R F RD KT LQE TP Y+V Sbjct: 128 ALYLDGGFEVARSFIRQEFVPLADRVCGHEDFERDYKTRLQELVQKSSKETPRYEVLAEE 187 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP HD F V V++ AQG SK+ AEQ+AA L+ Sbjct: 188 GPPHDREFLVCVKVKEDVWAQGRGRSKKNAEQMAAKNALE 227 >gi|258541744|ref|YP_003187177.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-01] gi|256632822|dbj|BAH98797.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-01] gi|256635879|dbj|BAI01848.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-03] gi|256638934|dbj|BAI04896.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-07] gi|256641988|dbj|BAI07943.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-22] gi|256645043|dbj|BAI10991.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-26] gi|256648098|dbj|BAI14039.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-32] gi|256651151|dbj|BAI17085.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654142|dbj|BAI20069.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-12] Length = 238 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 121/229 (52%), Gaps = 12/229 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----------SYERLEFLGDRILGL 53 R LE R+GY F N LL++ALTH S +H S ERLEF+GDR+LGL Sbjct: 8 RLEELEVRLGYRFVNPDLLQEALTHRSAAHQKAGGRKRQKAKGAGSNERLEFIGDRVLGL 67 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 L++ L F + +EG L R LVS + +++A LDL + V++ + + Sbjct: 68 LMAEWLLERFPNEQEGALGSRLAHLVSRVSLAEIADRLDLPQSLTVAAHEARAGVQTAAN 127 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 + AD +E+++ A++LDGG+E A V +WK +D KT LQEW + P Sbjct: 128 VVADALEAVLGAVFLDGGLEPARQMVRDWWKSALDAQAHPPKDPKTALQEWVLGRGQSLP 187 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+ GP H P F V V GL +G SKRAAE AAA++L++ Sbjct: 188 VYETIGADGPSHAPLFVVRVTAGGLF-GEGRAGSKRAAESAAAADLLEK 235 >gi|282892110|ref|ZP_06300585.1| hypothetical protein pah_c207o041 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498005|gb|EFB40349.1| hypothetical protein pah_c207o041 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 236 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 S +E R+GY F +R LL A H S + E ERLEFLGD +LGLLI+ L+ + Sbjct: 12 SNIELRLGYKFQDRDLLALAFVHRSFINENREIHEHNERLEFLGDSVLGLLIADYLYRYL 71 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S EGELS + LV A +C +LDL F+ + R + SI AD++E++I Sbjct: 72 PSTPEGELSYLKSRLVEASSCVTYIHKLDLEQFLLLGRGERMNDGRGRESILADLLEAII 131 Query: 124 AALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 A+YLDGG+E A F+ K + + LK+ R+ K LQ++ K+ TP Y V Sbjct: 132 GAVYLDGGLESAKAFLFKNFSTEIEAILKTPV--RNWKALLQDYCQKKYQTTPSYHVIDE 189 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDH F + V ++ +G SK+ A+Q AA + L + I Sbjct: 190 KGPDHSKTFKISVFLNDEEVGKGEGGSKKEAQQKAAEDALSKMDI 234 >gi|254230524|ref|ZP_04923895.1| ribonuclease III [Vibrio sp. Ex25] gi|262393270|ref|YP_003285124.1| ribonuclease III [Vibrio sp. Ex25] gi|151936949|gb|EDN55836.1| ribonuclease III [Vibrio sp. Ex25] gi|262336864|gb|ACY50659.1| ribonuclease III [Vibrio sp. Ex25] Length = 225 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/217 (36%), Positives = 119/217 (54%), Gaps = 6/217 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++GY F + L+ ALTH S + + E RLEFLGD IL +I+ L++ F E Sbjct: 8 LERKLGYQFQDAGLINLALTHRSANSKHNE---RLEFLGDSILSFVIADDLYHRFPKVNE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++ RE DL ++++ K SI AD VE++I A+YL Sbjct: 65 GDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D +EV V ++ R A+K G ++D KT LQE+ + P Y VT G H+ Sbjct: 125 DSDLEVVRGIVLSWYNSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHN 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 FTV E++G+ P G S+R AEQ AA L++ Sbjct: 185 QEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQ 221 >gi|1228146|gb|AAA92440.1| RNase III [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 224 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANAL- 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S + LV T +++ARE DL +R+ K SI AD VE Sbjct: 57 SRFPRVDEGDMSRMRDPLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ + P Y V Sbjct: 117 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 176 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223 G HD FT+ ++SGL+ P G S+R AEQ AA V K E Sbjct: 177 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAANSVKKLE 222 >gi|239993708|ref|ZP_04714232.1| ribonuclease III [Alteromonas macleodii ATCC 27126] Length = 228 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 6/221 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +Y L K IGY F N +LLE+ALTH S + + E RLEFLGD ILG+++ LF F Sbjct: 6 KYRRLYKAIGYTFTNEALLEQALTHRSAAKQHNE---RLEFLGDAILGMIVGETLFKRFP 62 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+L+ ++LV +T +++A+E + + + K +SI AD VE+++ Sbjct: 63 TVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAVEAILG 122 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G++ +D+ W+ R L +D+KT LQE+ + P Y+V SG Sbjct: 123 AIYLDSGMDEVRGVIDRLWETRINKLDPNAHPKDSKTRLQEFLQGRKQALPTYEVLSISG 182 Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 DH F V ++ L A S+R AEQ AA L++ Sbjct: 183 KDHAQTFEVSCQVESLPEAVVASGNSRRKAEQEAARLTLEK 223 >gi|28899346|ref|NP_798951.1| ribonuclease III [Vibrio parahaemolyticus RIMD 2210633] gi|153839958|ref|ZP_01992625.1| ribonuclease III [Vibrio parahaemolyticus AQ3810] gi|260365941|ref|ZP_05778431.1| ribonuclease III [Vibrio parahaemolyticus K5030] gi|260878963|ref|ZP_05891318.1| ribonuclease III [Vibrio parahaemolyticus AN-5034] gi|260898320|ref|ZP_05906816.1| ribonuclease III [Vibrio parahaemolyticus Peru-466] gi|31076860|sp|Q87LN9|RNC_VIBPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28807582|dbj|BAC60835.1| ribonuclease III [Vibrio parahaemolyticus RIMD 2210633] gi|149746517|gb|EDM57506.1| ribonuclease III [Vibrio parahaemolyticus AQ3810] gi|308085245|gb|EFO34940.1| ribonuclease III [Vibrio parahaemolyticus Peru-466] gi|308090440|gb|EFO40135.1| ribonuclease III [Vibrio parahaemolyticus AN-5034] gi|308113210|gb|EFO50750.1| ribonuclease III [Vibrio parahaemolyticus K5030] gi|328474121|gb|EGF44926.1| ribonuclease III [Vibrio parahaemolyticus 10329] Length = 225 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 80/217 (36%), Positives = 119/217 (54%), Gaps = 6/217 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++GY F + L+ ALTH S + + E RLEFLGD IL +I+ L++ F E Sbjct: 8 LERKLGYQFKDAGLINLALTHRSANSKHNE---RLEFLGDSILSFVIADDLYHRFPKVNE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++ RE DL ++++ K SI AD VE++I A+YL Sbjct: 65 GDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D IE + V ++ R A+K G ++D KT LQE+ + P Y VT G H+ Sbjct: 125 DSDIEKVRSIVLSWYNSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHN 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 FTV E++G+ P G S+R AEQ AA L++ Sbjct: 185 QEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQ 221 >gi|220928138|ref|YP_002505047.1| ribonuclease III [Clostridium cellulolyticum H10] gi|219998466|gb|ACL75067.1| ribonuclease III [Clostridium cellulolyticum H10] Length = 236 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 85/232 (36%), Positives = 121/232 (52%), Gaps = 10/232 (4%) Query: 1 MSALRY----STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILG 52 M+ +RY S LE IGY F N+ ++ A+THSS ++ + + ERLEFLGD +LG Sbjct: 1 MAEIRYDNRISELEDIIGYTFKNKDIIFAAVTHSSYANEKKSRKLKYNERLEFLGDSVLG 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L IS LF + EGELSV +V + SQ A ++ L ++ + Sbjct: 61 LTISEYLFQKKPNLPEGELSVTRAKIVCENSLSQCATDIGLGKYLLLGKGEELSGGREKI 120 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFG 170 S+ +D E+LI ALY+DGG E A +F+ +Y + ++ GK D KT+LQE Sbjct: 121 SLLSDAFEALIGALYIDGGFETAKSFIYRYMDKIIKSCIEGKLFYDYKTQLQELVQQNGE 180 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y VT + GPDH+ F V+I+G +G SK+ AEQ AA L Sbjct: 181 QQITYSVTDQFGPDHNKTFITEVKINGAIQGRGKGHSKKEAEQNAAKNALNN 232 >gi|34558193|ref|NP_908008.1| ribonuclease III [Wolinella succinogenes DSM 1740] gi|81653364|sp|Q7M840|RNC_WOLSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|34483912|emb|CAE10908.1| RIBONUCLEASE III [Wolinella succinogenes] Length = 238 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 84/212 (39%), Positives = 116/212 (54%), Gaps = 8/212 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 EKR+GY F N++LL +ALTH S Y ERLEFLGD +L L+I LF F A E Sbjct: 7 FEKRLGYRFQNKNLLIEALTHKSYKKPYNN--ERLEFLGDAVLDLVIGEFLFLKFPKADE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS SLV+ + +++A + L I +S+ + S+ ++ E+ + A+YL Sbjct: 65 GELSKMRASLVNEKGFAKLAERVSLGRHIFISNAEENNKGREKPSLLSNAFEATMGAIYL 124 Query: 129 DGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G+ EV +D+ + + L G RD KT LQE AKFG TPEY + SGPD Sbjct: 125 ETGLSVVREVVHRLLDEVYPKIDL--GSLFRDYKTALQELTQAKFGETPEYVILGSSGPD 182 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 H F V V + G A+ SK+ A+Q AA Sbjct: 183 HKKEFEVAVCVLGSEYARACGSSKKEAQQEAA 214 >gi|332141899|ref|YP_004427637.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype'] gi|327551921|gb|AEA98639.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype'] Length = 228 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 121/225 (53%), Gaps = 14/225 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +Y L K IGY F N +LLE+ALTH S + + E RLEFLGD ILG++I LF F Sbjct: 6 KYLRLYKAIGYTFNNEALLEQALTHRSAAKQHNE---RLEFLGDAILGMIIGETLFKRFP 62 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+L+ ++LV +T +++A+E + + + K +SI AD VE+++ Sbjct: 63 TVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAVEAILG 122 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G++ +D+ W+ R L +D+KT LQE+ + P Y+V SG Sbjct: 123 AIYLDSGMDEVRGVIDRLWESRINQLDPNAHPKDSKTRLQEFLQGRKQALPTYEVLSISG 182 Query: 183 PDHDPRFTVVVEISGL-----APAQGMDCSKRAAEQVAAAEVLKR 222 DH F V ++ L AP S+R AEQ AA L++ Sbjct: 183 KDHAQTFEVCCKVESLPDAVVAPGN----SRRKAEQEAARLTLEK 223 >gi|332140432|ref|YP_004426170.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype'] gi|327550454|gb|AEA97172.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype'] Length = 228 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 120/221 (54%), Gaps = 6/221 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +Y L K IGY F N +LLE+ALTH S + + E RLEFLGD ILG++I LF F Sbjct: 6 KYLRLYKAIGYTFNNEALLEQALTHRSAAKQHNE---RLEFLGDAILGMIIGETLFKRFP 62 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+L+ ++LV +T +++A+E + + + K +SI AD VE+++ Sbjct: 63 TVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAVEAILG 122 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G++ +D+ W+ R L +D+KT LQE+ + P Y+V SG Sbjct: 123 AIYLDSGMDEVRGVIDRLWESRINQLDPNAHPKDSKTRLQEFLQGRKQALPTYEVLSISG 182 Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 DH F V ++ L A S+R AEQ AA L++ Sbjct: 183 KDHAQTFEVCCKVESLPDAVVASGNSRRKAEQEAARLTLEK 223 >gi|83644632|ref|YP_433067.1| ribonuclease III [Hahella chejuensis KCTC 2396] gi|123534042|sp|Q2SL32|RNC_HAHCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|83632675|gb|ABC28642.1| ribonuclease III [Hahella chejuensis KCTC 2396] Length = 226 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 85/220 (38%), Positives = 120/220 (54%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++ +GY F +LL ALTH S + ERLEFLGD +L +I+ LF F+ A+E Sbjct: 8 LQRALGYTFKEPALLTLALTHRSFGG---RNNERLEFLGDSVLNFIIADYLFGRFEEARE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +V T +++ARE DL ++R+ S K SI AD +ES+I A+YL Sbjct: 65 GQLSRLRARMVKGVTLAEIAREFDLGEYLRLGSGEMKSGGFRRESILADALESIIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G EV V +++ R L ++D+KT LQE+ A+ P Y+V G H Sbjct: 125 DAGFEVCADRVLNWFEARLQKLNLKDTQKDSKTRLQEYLQARQLNLPRYEVISVQGEAHA 184 Query: 187 PRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225 F V EI GL+ A +G S+R AEQ AA + L G+ Sbjct: 185 QTFHVRCEIDGLSDATEGTGSSRRVAEQKAAKQALLALGV 224 >gi|153005020|ref|YP_001379345.1| ribonuclease III [Anaeromyxobacter sp. Fw109-5] gi|152028593|gb|ABS26361.1| Ribonuclease III [Anaeromyxobacter sp. Fw109-5] Length = 377 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 81/218 (37%), Positives = 118/218 (54%), Gaps = 9/218 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLLFN 61 +TLE R+G +RS ALTH S + +++ ERLEFLGD ++ L +S L Sbjct: 18 ATLEARLGLCLGDRSTALAALTHKSYVNEHRDEPGLGDNERLEFLGDAVIDLAVSHRLME 77 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +A+EG+LS ++V + S++AR LDL S +R+ S+ AD +E+ Sbjct: 78 RFPAAREGDLSKMRAAVVDEQGLSEMARALDLGSLLRLGRGEELTGGRRKASLLADAMEA 137 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++AALYLD G+ +D++ RA +G RD KT+LQE A ++ TP Y+V Sbjct: 138 VVAALYLDAGLAPVLVLIDRFLGDAFARA-AAGTLDRDFKTQLQELAQSRVRATPRYRVV 196 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH F V E+ G +G SK+ AEQ AA Sbjct: 197 GEHGPDHSKTFEVETELRGEVVGRGTGRSKKDAEQAAA 234 >gi|329114470|ref|ZP_08243232.1| Ribonuclease 3 [Acetobacter pomorum DM001] gi|326696546|gb|EGE48225.1| Ribonuclease 3 [Acetobacter pomorum DM001] Length = 253 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 121/229 (52%), Gaps = 12/229 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----------SYERLEFLGDRILGL 53 R LE R+GY F N LL++ALTH S +H S ERLEF+GDR+LGL Sbjct: 23 RLEELEVRLGYRFVNPDLLQEALTHRSAAHQKAGGRKRQKAKGAGSNERLEFIGDRVLGL 82 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 L++ L F + +EG L R LVS + +++A LDL + V++ + + Sbjct: 83 LMAEWLLERFPNEQEGALGSRLAHLVSRVSLAEIADRLDLPQSLTVAAHEARAGVQTAAN 142 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 + AD +E+++ A++LDGG+E A V +W+ +D KT LQEW + P Sbjct: 143 VVADALEAVLGAVFLDGGLEPARQMVRDWWRSALDAQAHPPKDPKTALQEWVLGRGQSLP 202 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+ GP H P F V V GL +G SKRAAE AAA++L++ Sbjct: 203 VYETIGADGPSHAPLFVVRVTAGGLF-GEGRAGSKRAAESAAAADLLEK 250 >gi|91794117|ref|YP_563768.1| ribonuclease III [Shewanella denitrificans OS217] gi|123165871|sp|Q12KI1|RNC_SHEDO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|91716119|gb|ABE56045.1| RNAse III [Shewanella denitrificans OS217] Length = 226 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 82/216 (37%), Positives = 121/216 (56%), Gaps = 6/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + +GY F N+ LL +ALTH S ++ + E RLEFLGD IL ++IS L++ F A E Sbjct: 10 LSRTLGYEFTNQELLVQALTHRSAANKHNE---RLEFLGDSILSIVISDALYHQFPKATE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV ET + +A+E L ++ + K SI AD VE++I A+YL Sbjct: 67 GDLSRMRATLVKGETLTLIAKEFKLGDYLFLGPGELKSGGFRRESILADAVEAIIGAVYL 126 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D ++ T + ++K R +K G ++D KT LQE+ P+Y+V G HD Sbjct: 127 DANMQACETLLLSWYKVRLDEIKPGINQKDPKTILQEYLQGYKKPLPDYQVVQVDGEAHD 186 Query: 187 PRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 FTV I L G+ S+R AEQ+AAA++L+ Sbjct: 187 QTFTVECRIQDLDEVVTGVGSSRRKAEQLAAAQILE 222 >gi|332992353|gb|AEF02408.1| ribonuclease III [Alteromonas sp. SN2] Length = 229 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/215 (37%), Positives = 115/215 (53%), Gaps = 6/215 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +Y L K +GY F N +LLE+ALTH S + + E RLEFLGD ILG++I LF F Sbjct: 6 KYIRLSKALGYTFNNVALLEQALTHRSAAKQHNE---RLEFLGDAILGMVIGETLFKRFP 62 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ ++LV +T +++ARE + + + K +SI AD VE+++ Sbjct: 63 DVPEGKLTRMRSTLVKGDTLAELAREASMGELLHLGPGELKSGGHRRSSILADAVEAVLG 122 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G+E + W+ R AL +D+KT LQE+ + P Y+V SG Sbjct: 123 AIYLDSGMEEVCNVIYHLWESRIEALNPNAHPKDSKTRLQEYLQGRKLPLPSYEVISISG 182 Query: 183 PDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAA 216 DH F V ++ L P S+R AEQ AA Sbjct: 183 KDHAQVFEVSCTVTTLDKPVSASGNSRRKAEQEAA 217 >gi|149910155|ref|ZP_01898801.1| ribonuclease III [Moritella sp. PE36] gi|149806741|gb|EDM66705.1| ribonuclease III [Moritella sp. PE36] Length = 223 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 83/217 (38%), Positives = 120/217 (55%), Gaps = 6/217 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ +GY + + LL++ALTH S +Y + ERLEFLGD +LG +IS LF F E Sbjct: 8 LQTVLGYQYQDAGLLQQALTHRS---AYYKHNERLEFLGDSVLGFIISDALFRQFPEVPE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV T +++ARE +L+ + + K SI AD VE+LI A+YL Sbjct: 65 GDLSRMRATLVKGLTLAEIAREFELSECLILGPGELKSGGFRRESILADTVEALIGAMYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D IE V ++ R ++ G ++DAKT+LQEW + P Y+V G H+ Sbjct: 125 DSDIEKTRERVLAWYASRLATIEPGIGQKDAKTQLQEWLQGRKQPLPLYQVVEVRGEAHN 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 FT+ I GL P +G S+R AEQ AA + L++ Sbjct: 185 QEFTIHCVIEGLDHPVEGKGTSRRKAEQEAAQKALEQ 221 >gi|222055246|ref|YP_002537608.1| Ribonuclease III [Geobacter sp. FRC-32] gi|221564535|gb|ACM20507.1| Ribonuclease III [Geobacter sp. FRC-32] Length = 238 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 126/220 (57%), Gaps = 10/220 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNH 62 + LEK I Y F ++SLL +ALTH S + ++ +RLEFLGD ++GL++S LF+ Sbjct: 10 AALEKLINYDFTDKSLLVEALTHPSFVNESGGKVRQDNQRLEFLGDAVVGLVLSHDLFSR 69 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F ++EGEL+ SLV + + +AR +DL + +++ + S+ AD E+L Sbjct: 70 FPDSREGELTKLRASLVDEASLAILARAIDLGAHLKLGRGEERSGGRTKPSLLADAYEAL 129 Query: 123 IAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +AA+YLDGGIE A + ++ ++R +++ RD KTE QE AH + P Y + Sbjct: 130 LAAVYLDGGIEPAAAIIKSHFASFMEKRNIRTSG--RDFKTEFQELAHRLRSLAPRYLLQ 187 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 SGPDH F+V V I +G+ SK+ AEQ AA + Sbjct: 188 GVSGPDHQRIFSVAVFIGEEFMGEGLAKSKKEAEQAAAEQ 227 >gi|257093153|ref|YP_003166794.1| Ribonuclease III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045677|gb|ACV34865.1| Ribonuclease III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 223 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 84/217 (38%), Positives = 117/217 (53%), Gaps = 6/217 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+ +GY F +R+LL+ ALTH S S + E RLEFLGD IL +I+ LF F + Sbjct: 4 SRLERGLGYTFRDRALLQTALTHRSYSSPHNE---RLEFLGDAILNAVIARSLFERFPTL 60 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS LV + Q A L L F+R+ +K SI AD +E+L AL Sbjct: 61 PEGDLSRLRAQLVRQDGLHQQALALSLGDFLRLGEGEQKSGGQQRPSILADGLEALFGAL 120 Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LD G E AG +++ ++ + L G+ +DAKT LQE+ + P+Y +T G Sbjct: 121 WLDAGFEAAGEVINRLYESMLKQLIPGQGTKDAKTRLQEYLQGRRLALPQYALTGAEGEA 180 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220 H FTV I L +G ++RAAEQ+AA L Sbjct: 181 HAQHFTVTCVIDALRIRTEGSGSNRRAAEQIAAERAL 217 >gi|118474451|ref|YP_892860.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40] gi|261885507|ref|ZP_06009546.1| ribonuclease III [Campylobacter fetus subsp. venerealis str. Azul-94] gi|189043299|sp|A0RRM7|RNC_CAMFF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|118413677|gb|ABK82097.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40] Length = 223 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 4/223 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + LE+ +GY F N++LL++ALTH S+ S ERLEFLGD +L L++ LF F Sbjct: 3 KLNRLEEHLGYKFKNKTLLKEALTHKSMKSSVNN--ERLEFLGDAVLDLIVGEYLFFKFK 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS +LV+ ++ + ++ ++ L F+ +S+ + S+ +D +E+L+ Sbjct: 61 DTDEGNLSKLRAALVNEKSFASISSQIRLGDFLYLSAAEDNNNGRNKPSLVSDALEALMG 120 Query: 125 ALYLDGGIE-VAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL+ G+E V F++ Q + +D KT LQE A+FGVTP Y++ SG Sbjct: 121 AIYLESGLEAVKKIFINLLESQYNNIDLQSLGKDYKTTLQEITQARFGVTPRYELVSSSG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PDH F + V ++ A+ + SK+ AEQ AA +VL+ I Sbjct: 181 PDHKKSFEMAVFLNDKELARAIGNSKKEAEQSAAWKVLQGMNI 223 >gi|268680594|ref|YP_003305025.1| ribonuclease III [Sulfurospirillum deleyianum DSM 6946] gi|268618625|gb|ACZ12990.1| ribonuclease III [Sulfurospirillum deleyianum DSM 6946] Length = 227 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 121/224 (54%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L+KR+GY F N++L+ +ALTH S Y + ERLEFLGD +L L++ L+ F Sbjct: 4 KLEALQKRLGYQFKNQNLIIEALTHKSSKQPY--NNERLEFLGDAVLDLIVGEYLYKEFL 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGELS SLV+ ++ ++AR L L I +S + S+ ++ E++I Sbjct: 62 GVAEGELSKLRASLVNEKSFEKLARLLHLGESIYISLAEENNNGREKPSLLSNAFEAIIG 121 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYL+ G+E A T ++ + RD KT LQE A FGVTPEY++ G Sbjct: 122 ALYLEAGLEKARTLAISLLEEAYPKIDMDAIFRDHKTTLQELTQAHFGVTPEYRLVRSFG 181 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA---AAEVLKRE 223 PDH F + V + G + SK+ A+Q A A E+LK+E Sbjct: 182 PDHQKEFEIAVSVRGSDLSLASGKSKKEAQQKAALLALEILKKE 225 >gi|160934422|ref|ZP_02081809.1| hypothetical protein CLOLEP_03295 [Clostridium leptum DSM 753] gi|156867095|gb|EDO60467.1| hypothetical protein CLOLEP_03295 [Clostridium leptum DSM 753] Length = 237 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 127/227 (55%), Gaps = 12/227 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFNH 62 + LE+ +GYAF N LL+ ALTHSS + H+ S ERLEFLGD +L +++S +F + Sbjct: 14 FRRLEENLGYAFQNPKLLKTALTHSSYANEAHNGTRSNERLEFLGDAVLSIVVSDYIFRN 73 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EGEL+ SLV ++ + +R L++ SF+R+S + + +SI AD E++ Sbjct: 74 CPHLPEGELTKMRASLVCEKSLQRFSRVLEIGSFLRLSRGEQNSGGAERSSILADAFEAV 133 Query: 123 IAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF-- 179 +AA+YLDGG+E A FV ++ + K +D KT LQE PE K+ + Sbjct: 134 LAAIYLDGGMEKAREFVLRFTVPEMENPKPKAFKDYKTALQEIVQQ----NPEEKLNYVL 189 Query: 180 --RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGPDH+ F V V ++ +G SK+ AEQ AA E L+ G Sbjct: 190 VGESGPDHNKHFVVEVHLNSNVIGKGGGRSKKEAEQQAAREALELMG 236 >gi|71907657|ref|YP_285244.1| ribonuclease III [Dechloromonas aromatica RCB] gi|90101622|sp|Q47EF7|RNC_DECAR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71847278|gb|AAZ46774.1| RNAse III [Dechloromonas aromatica RCB] Length = 222 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/219 (36%), Positives = 123/219 (56%), Gaps = 10/219 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 ++ K++ + F++++L ALTH S + ERLEFLGD +L +I+ L++ F Sbjct: 5 SVAKKLNHCFSDQALFRTALTHRSFG---TPNNERLEFLGDGVLDFVIAASLYHRFPDLP 61 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS +LV ET ++A EL++ +F+R+ K + SI AD +E+L A+Y Sbjct: 62 EGDLSRLRANLVRQETLHRLALELNIGAFLRLGEGELKSGGAQRPSILADALEALFGAIY 121 Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD G E + ++K + LK G+F++DAKT LQEW + P Y + +G H Sbjct: 122 LDAGFEASRAVIEKLFAPLLDDLKPGQFQKDAKTRLQEWLQGRKKALPRYHLLEATGAAH 181 Query: 186 DPRFTVVVEISGLAPAQ---GMDCSKRAAEQVAAAEVLK 221 + RF + EI +PA G S+R AEQVAA + LK Sbjct: 182 EQRFEIACEIE--SPALRTVGHGSSRRIAEQVAAEKALK 218 >gi|224368198|ref|YP_002602361.1| two domain fusion protein Includes: metal-dependent phosphoesterase / ribonuclease III [Desulfobacterium autotrophicum HRM2] gi|223690914|gb|ACN14197.1| two domain fusion protein Includes: metal-dependent phosphoesterase / ribonuclease III [Desulfobacterium autotrophicum HRM2] Length = 520 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 118/223 (52%), Gaps = 7/223 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLF 60 R LEK +G+ FANR LLE AL HSS + Q + +RLEF+GD +LGL I +L Sbjct: 292 RLEILEKNLGHTFANRELLENALRHSSYVNELQANQVPDNQRLEFMGDAVLGLTIGQILM 351 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG LS +LVS + +AR++DL FIR+ R S SI AD E Sbjct: 352 EEHPGMNEGSLSKARAALVSEPALASMARQIDLGRFIRLGKGERLSRGSEKNSILADAFE 411 Query: 121 SLIAALYLDGGIEVAGTFV-DKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++AA+YLD G + V +++ Q + + S D K+ LQE+ K P Y + Sbjct: 412 AVMAAIYLDCGFKQTCALVKEQFISQIKLINSAPEIEDFKSMLQEFVQEKGNTPPCYTIH 471 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDHD F++ V+ + + G SK+AAEQ AA LK Sbjct: 472 REFGPDHDKTFSICVKACDIE-SMGSGKSKKAAEQHAAQNALK 513 >gi|302391792|ref|YP_003827612.1| RNAse III [Acetohalobium arabaticum DSM 5501] gi|302203869|gb|ADL12547.1| RNAse III [Acetohalobium arabaticum DSM 5501] Length = 234 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 122/220 (55%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L+ +I FA+ LL++ALTH S ++ ++ ERLEFLGD +L +++S +FN + Sbjct: 13 LQSKIDIYFADLDLLQRALTHKSYANENRDLNLKDNERLEFLGDSVLDIVVSEYMFNRYP 72 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ S+VSA T + ARELDL ++ + +SI AD E+L+ Sbjct: 73 DYPEGKLAKMRASVVSAPTLAAKARELDLGRYLLLGHGEEMTGGRKRSSILADAFEALVG 132 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ++YLD +++A F+ K K + ++G+ RD KT LQE + PEY V G Sbjct: 133 SIYLDQDLDIAEDFIMKLMKVDIESAEAGEHIRDYKTTLQEMIQKRSNARPEYYVIEEKG 192 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 PDH FTV V+ + + +G SK+ A+Q AA LK+ Sbjct: 193 PDHSKEFTVEVKFNDRSLGEGTGSSKKEAQQQAAKNALKK 232 >gi|88606764|ref|YP_505691.1| ribonuclease III [Anaplasma phagocytophilum HZ] gi|123494405|sp|Q2GIW0|RNC_ANAPZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|88597827|gb|ABD43297.1| ribonuclease III [Anaplasma phagocytophilum HZ] Length = 236 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 122/211 (57%), Gaps = 4/211 (1%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 GY F + LL+ A+TH SI+ SYERLEFLGD +LGL++S +L+ F EG L+ Sbjct: 21 GYRFQDHELLKTAVTHPSIAAERYASYERLEFLGDAVLGLVVSEMLYTLFPDDSEGLLTK 80 Query: 74 RFNSLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + +LV ++A+ L+L + + +S +L S ++++ + +E+LI A+Y+DGG+ Sbjct: 81 KRIALVRGSKVVEIAQSLNLGNILLMSKGELTSGGISNNSNLE-NALEALIGAIYVDGGL 139 Query: 133 EVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 E F+ ++WK A + +DAKT LQEWA P Y++ +SG +H P FTV Sbjct: 140 ESVRHFILQHWKPLATNLADTPLQDAKTALQEWAQGHNFAIPSYRLINKSGLEHAPVFTV 199 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V ++G C K+ AE AA +L++ Sbjct: 200 EVTVNG-QRVHATGCKKKYAEIAAAKLMLEK 229 >gi|323144165|ref|ZP_08078801.1| ribonuclease III [Succinatimonas hippei YIT 12066] gi|322416073|gb|EFY06771.1| ribonuclease III [Succinatimonas hippei YIT 12066] Length = 233 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 89/217 (41%), Positives = 122/217 (56%), Gaps = 8/217 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE IGYAF N SLLE+ALTH S + E RLEFLGD ILG++I+ L+ F E Sbjct: 13 LEITIGYAFQNLSLLEQALTHRSFGPVHNE---RLEFLGDSILGMVIAKKLYAMFPHNPE 69 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ +SLV T +++ARE L + +R+ K + S+ AD VES+IAA+YL Sbjct: 70 GDLTRMRSSLVRETTLAELAREFGLGNCLRLGPGELKTGGARRDSLLADAVESVIAAMYL 129 Query: 129 DGGIE--VAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D G E V ++ R + ++D K+ LQE ++ P+YKV SG D Sbjct: 130 DSGEEFDTVRQIVLSWFHSRLKTINPKVNQKDPKSSLQELLQSQHKPLPQYKVVNISGTD 189 Query: 185 HDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220 +D FTV V + G++ G SKR AEQVAA +L Sbjct: 190 NDQVFTVEVCVEGVSEKFSGKGSSKRRAEQVAAQHLL 226 >gi|260899641|ref|ZP_05908036.1| ribonuclease III [Vibrio parahaemolyticus AQ4037] gi|308110559|gb|EFO48099.1| ribonuclease III [Vibrio parahaemolyticus AQ4037] Length = 225 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 80/217 (36%), Positives = 119/217 (54%), Gaps = 6/217 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++GY F + L+ ALTH S + + E RLEFLGD IL +I+ L++ F E Sbjct: 8 LERKLGYQFKDAGLINLALTHRSANSKHNE---RLEFLGDSILSFVIADDLYHRFPKVNE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++ RE DL ++++ K SI AD VE++I A+YL Sbjct: 65 GDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D IE + V ++ R A+K G ++D KT LQE+ + P Y VT G H+ Sbjct: 125 DSDIEKVRSIVLSWYYSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHN 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 FTV E++G+ P G S+R AEQ AA L++ Sbjct: 185 QEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQ 221 >gi|85373795|ref|YP_457857.1| ribonuclease III [Erythrobacter litoralis HTCC2594] gi|84786878|gb|ABC63060.1| ribonuclease III [Erythrobacter litoralis HTCC2594] Length = 223 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 1 MSALRYSTLE--KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 M+ L TL+ G+A + L +ALTH S + Y+RLEFLGDR+LGL IS Sbjct: 1 MTILAPETLQWLADTGFAVEDDELWLEALTHGSTG--AERDYQRLEFLGDRVLGLAISDH 58 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF EG L+ R N+LVS C+++ R + L+ + + R+D + T+I DV Sbjct: 59 LFRKV-GGSEGALAQRLNALVSKGACAKIGRRIGLSDHLVLGKQAREDGAAQSTNILGDV 117 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 VE+L+ A YLD G V W + + K+ LQEWA P+Y++ Sbjct: 118 VEALLGANYLDAGFGPTCALVHLLWDEDLNGMAGRSKHPKSALQEWAAGNQRRPPQYELV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 RSGPDH FTV VE+ + A+ SK+ AE AA + +++ G Sbjct: 178 DRSGPDHAAIFTVRVEVHKVGAAEATASSKQEAETEAAKKFMEQFG 223 >gi|253699690|ref|YP_003020879.1| ribonuclease III [Geobacter sp. M21] gi|251774540|gb|ACT17121.1| ribonuclease III [Geobacter sp. M21] Length = 232 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 127/224 (56%), Gaps = 11/224 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E R+GY F +R LL +ALTH + ++ + +RLEF GD +L L+S +L F ++ Sbjct: 12 IEGRLGYRFRDRGLLAEALTHRTYVNEAGGRDNQRLEFFGDAVLDFLLSDMLLVRFPDSR 71 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EGEL+ +LV + +++A ELDL +R+ + S+ AD E+L+AALY Sbjct: 72 EGELTRIRAALVDEASLAKIAIELDLGQALRLGRGEERGGGRQKRSLLADAFEALLAALY 131 Query: 128 LDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 LDGG++ A V+ + R L SG RDAKTELQE A G P Y++ SGP Sbjct: 132 LDGGLDPARRVVEALFAPLLSSRDLLSG---RDAKTELQEKARLVKGELPRYQLKEVSGP 188 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKREG 224 DHD RFTV V + +G+ SK+ AEQ AA +LK EG Sbjct: 189 DHDKRFTVEVYLGEELMGEGVGKSKKEAEQDAARAAFLLLKGEG 232 >gi|148265180|ref|YP_001231886.1| ribonuclease III [Geobacter uraniireducens Rf4] gi|146398680|gb|ABQ27313.1| RNAse III [Geobacter uraniireducens Rf4] Length = 240 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 122/222 (54%), Gaps = 10/222 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE I Y FA+RSLL +ALTH S + + + +RLEF GD ++ L+S +L F Sbjct: 12 LESAINYHFADRSLLTEALTHRSFVNESGGKWTKDNQRLEFFGDAVIDFLLSRMLLERFP 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 ++EG L+ SLV + + +A E+ L +F+++ + S+ AD E+L+A Sbjct: 72 DSREGALTKIRASLVDEGSLASLAEEIGLGAFLKLGRGEERSGGRRKRSLLADAYEALMA 131 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK----FRRDAKTELQEWAHAKFGVTPEYKVTFR 180 A+YLDGGIE V+ ++ + L +G+ RD KTE QE AHA G P Y + Sbjct: 132 AVYLDGGIEPVQRLVEAHFAR--LMAGREVLSAGRDYKTEFQELAHALRGSMPRYVLRGI 189 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGPDH+ FTV + I +G SK+ AEQ AA E + R Sbjct: 190 SGPDHERSFTVALFIGDERMGEGAGRSKKEAEQAAAREGIAR 231 >gi|224438391|ref|ZP_03659318.1| ribonuclease III [Helicobacter cinaedi CCUG 18818] gi|313144833|ref|ZP_07807026.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818] gi|313129864|gb|EFR47481.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818] Length = 242 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/210 (37%), Positives = 115/210 (54%), Gaps = 4/210 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK++GY F ++ LL +ALTH S ++Y ERLEFLGD +L LL+ LF F SAKE Sbjct: 13 LEKKLGYTFKDKKLLLEALTHKSCKNAYNN--ERLEFLGDAVLDLLVGEFLFRKFPSAKE 70 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +V+ + ++A+ LDL +F+ +S + SI ++ E+L+ A+YL Sbjct: 71 GELSKLRACIVNEKGFMKLAKSLDLGAFLHISQSEEHNKGREKASILSNAFEALMGAIYL 130 Query: 129 DGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + + V K +Q K D KT LQE A FG P Y + SGPDH Sbjct: 131 ESELTFLKDIVLKLLEQNYAKIDLRSLFTDYKTALQELTQAIFGEIPTYTLVSESGPDHQ 190 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 F + + ++G+ A+ SK+ A+Q +A Sbjct: 191 KSFEIALSVNGVEYARAKGSSKKDAQQKSA 220 >gi|254797243|ref|YP_003082085.1| ribonuclease III [Neorickettsia risticii str. Illinois] gi|254590493|gb|ACT69855.1| ribonuclease III [Neorickettsia risticii str. Illinois] Length = 222 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 72/194 (37%), Positives = 108/194 (55%), Gaps = 2/194 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L+ +G F N+ LL +ALTH S+ SYERLEFLGD +L L+++++L++ F Sbjct: 1 MELEELQSLLGVHFKNKELLVEALTHPSVEKC--PSYERLEFLGDAVLNLVVASMLYDLF 58 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS R + LV + +AR+++L IR+SS T+ +V+E+LI Sbjct: 59 PGDPEGRLSQRQSVLVCKTALAMLARQMNLGDCIRLSSSEEASGGRDKTNNLENVLEALI 118 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++LD G E F+ K+W + A++S + K+ LQE AK P Y V RSGP Sbjct: 119 GAIFLDAGFETVTCFIQKHWYELAVQSDSIEPNPKSALQELLQAKGMKPPVYNVIDRSGP 178 Query: 184 DHDPRFTVVVEISG 197 H P F V + + G Sbjct: 179 AHLPIFEVEICVDG 192 >gi|152995275|ref|YP_001340110.1| ribonuclease III [Marinomonas sp. MWYL1] gi|189043327|sp|A6VUP6|RNC_MARMS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|150836199|gb|ABR70175.1| Ribonuclease III [Marinomonas sp. MWYL1] Length = 227 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/216 (40%), Positives = 120/216 (55%), Gaps = 7/216 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS+L Y L +RIGY FA+ LLE ALTH S ++ ERLEFLGD IL +I+ LF Sbjct: 1 MSSL-YQKLSRRIGYFFADLGLLELALTHRSFG---GKNNERLEFLGDSILNYVIAEDLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F AKEGELS SLV +T +++ARE +L ++++ + K SI AD VE Sbjct: 57 HRFPKAKEGELSRLRASLVKGDTLAELAREFELGDYLKLGAGELKSGGFRRDSILADTVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +I A+YLD G++V + ++K+R A +DAKT LQE+ A+ P+Y V Sbjct: 117 GIIGAMYLDAGMDVCRQHILAWYKERLDATSLKIVTKDAKTRLQEFLQARKHALPQYDVV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213 G HD F V I +G S+R AEQ Sbjct: 177 NIVGEPHDQTFYVHCHIELCEEFIEGKGNSRRIAEQ 212 >gi|15642457|ref|NP_232090.1| ribonuclease III [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590982|ref|ZP_01678301.1| ribonuclease III [Vibrio cholerae 2740-80] gi|153820073|ref|ZP_01972740.1| ribonuclease III [Vibrio cholerae NCTC 8457] gi|153823692|ref|ZP_01976359.1| ribonuclease III [Vibrio cholerae B33] gi|227082582|ref|YP_002811133.1| ribonuclease III [Vibrio cholerae M66-2] gi|229507479|ref|ZP_04396984.1| ribonuclease III [Vibrio cholerae BX 330286] gi|229512326|ref|ZP_04401805.1| ribonuclease III [Vibrio cholerae B33] gi|229519462|ref|ZP_04408905.1| ribonuclease III [Vibrio cholerae RC9] gi|229606984|ref|YP_002877632.1| ribonuclease III [Vibrio cholerae MJ-1236] gi|254849586|ref|ZP_05238936.1| ribonuclease III [Vibrio cholerae MO10] gi|298500182|ref|ZP_07009987.1| ribonuclease III [Vibrio cholerae MAK 757] gi|18203192|sp|Q9KPB2|RNC_VIBCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807908|sp|C3LR04|RNC_VIBCM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|9657039|gb|AAF95603.1| ribonuclease III [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547159|gb|EAX57288.1| ribonuclease III [Vibrio cholerae 2740-80] gi|126509385|gb|EAZ71979.1| ribonuclease III [Vibrio cholerae NCTC 8457] gi|126518780|gb|EAZ76003.1| ribonuclease III [Vibrio cholerae B33] gi|227010470|gb|ACP06682.1| ribonuclease III [Vibrio cholerae M66-2] gi|229344151|gb|EEO09126.1| ribonuclease III [Vibrio cholerae RC9] gi|229352291|gb|EEO17232.1| ribonuclease III [Vibrio cholerae B33] gi|229354984|gb|EEO19905.1| ribonuclease III [Vibrio cholerae BX 330286] gi|229369639|gb|ACQ60062.1| ribonuclease III [Vibrio cholerae MJ-1236] gi|254845291|gb|EET23705.1| ribonuclease III [Vibrio cholerae MO10] gi|297540875|gb|EFH76929.1| ribonuclease III [Vibrio cholerae MAK 757] Length = 225 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 6/219 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + + E RLEFLGD IL +I+ L+ F Sbjct: 6 NKLTSKLGYTFKETELLNLALTHRSANGKHNE---RLEFLGDSILSFVIADELYRRFPKV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 63 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A + V +++ R +K G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSDLETARSIVLEWYHGRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQ 221 >gi|189184858|ref|YP_001938643.1| ribonuclease III [Orientia tsutsugamushi str. Ikeda] gi|189181629|dbj|BAG41409.1| ribonuclease III [Orientia tsutsugamushi str. Ikeda] Length = 246 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 132/223 (59%), Gaps = 12/223 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63 + TL+ IGY F + LL +ALTH SI+ + Y ++Y+RLEFLGD IL L+IS LF +F Sbjct: 18 KLDTLQSEIGYNFNSIDLLIEALTHPSINQYGYTKNYQRLEFLGDVILNLVISETLFKNF 77 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC---SFMTSIQADVVE 120 EG+L+ LV E+ +A++++L +I ++++ K C S +I+ + +E Sbjct: 78 SHYNEGKLAKSRAFLVCNESICLIAQKINLHKYIIMTANEEK--CGGRSNKNNIE-NTME 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAK-FGVTPEYKV 177 ++I A+YLDGGI V V+ WK +K + D K+ LQEW+ +K FG+ P Y + Sbjct: 135 AVIGAVYLDGGIHVIKDIVNSLWK-VLIKDHELYLIADPKSALQEWSQSKNFGI-PTYTL 192 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + ++G H P F V+V++ L P G + + A++ AA +L Sbjct: 193 SSKTGQSHSPLFEVMVKVGRLEPQYGKGTTIKTAQKNAAQLML 235 >gi|156975792|ref|YP_001446699.1| ribonuclease III [Vibrio harveyi ATCC BAA-1116] gi|269960405|ref|ZP_06174778.1| Ribonuclease 3 [Vibrio harveyi 1DA3] gi|189043375|sp|A7MZA8|RNC_VIBHB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|156527386|gb|ABU72472.1| hypothetical protein VIBHAR_03536 [Vibrio harveyi ATCC BAA-1116] gi|269834832|gb|EEZ88918.1| Ribonuclease 3 [Vibrio harveyi 1DA3] Length = 225 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/217 (36%), Positives = 118/217 (54%), Gaps = 6/217 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++GY F + L+ ALTH S + + E RLEFLGD IL +I+ L++ F E Sbjct: 8 LERKLGYQFKDAGLINLALTHRSANSKHNE---RLEFLGDSILSFVIADDLYHRFPKVNE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++ RE DL ++++ K SI AD VE++I A+YL Sbjct: 65 GDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D IE V ++ R A+K G ++D KT LQE+ + P Y VT G H+ Sbjct: 125 DSDIEAVRGIVLSWYNSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHN 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 FTV +++G+ P G S+R AEQ AA L++ Sbjct: 185 QEFTVECDVAGVDKPVIGKGTSRRKAEQAAAETALEQ 221 >gi|255746868|ref|ZP_05420813.1| ribonuclease III [Vibrio cholera CIRS 101] gi|262162033|ref|ZP_06031049.1| ribonuclease III [Vibrio cholerae INDRE 91/1] gi|255735270|gb|EET90670.1| ribonuclease III [Vibrio cholera CIRS 101] gi|262028282|gb|EEY46939.1| ribonuclease III [Vibrio cholerae INDRE 91/1] Length = 221 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 6/219 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + + E RLEFLGD IL +I+ L+ F Sbjct: 2 NKLTSKLGYTFKETELLNLALTHRSANGKHNE---RLEFLGDSILSFVIADELYRRFPKV 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 59 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A + V +++ R +K G ++D KT LQE+ + P Y VT G Sbjct: 119 YLDSDLETARSIVLEWYHGRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQ 217 >gi|158320491|ref|YP_001512998.1| ribonuclease III [Alkaliphilus oremlandii OhILAs] gi|158140690|gb|ABW19002.1| Ribonuclease III [Alkaliphilus oremlandii OhILAs] Length = 241 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 119/219 (54%), Gaps = 6/219 (2%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDS 65 +K IGY F N S++ +ALTHSS ++ Y+ ++ ERLEFLGD +LG+++S ++ + Sbjct: 15 QKIIGYQFKNLSIINEALTHSSYTNEYRKKQVQNNERLEFLGDSVLGIVVSEYIYLKYKD 74 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL+ ++V + A+E+ L ++ + SI AD E++I A Sbjct: 75 LPEGELTKIRANVVCEPSLGNQAKEIKLGQYLLLGKGEEATGGRDRVSILADAFEAVIGA 134 Query: 126 LYLDGGIEVAGTFV-DKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 LYLDGGI VAG F+ D + L G RD KT+LQE +K+ YKV GP Sbjct: 135 LYLDGGIAVAGKFILDMLTRSIELAIEGNLFRDYKTDLQEILQSKYDEKISYKVVSEVGP 194 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 DH+ F V + + + G SK+ AEQ AA LK+ Sbjct: 195 DHNKTFEVEILLGEKSLGMGEGKSKKEAEQRAAKSALKK 233 >gi|315638039|ref|ZP_07893224.1| ribonuclease III [Campylobacter upsaliensis JV21] gi|315481887|gb|EFU72506.1| ribonuclease III [Campylobacter upsaliensis JV21] Length = 224 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 126/224 (56%), Gaps = 8/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE ++ Y F ++ LL ALTH S +Y ERLEFLGD +L L++ LF+ F Sbjct: 3 KLELLEAKLNYKFKDQKLLIYALTHKSAKKNYNN--ERLEFLGDAVLDLVVGEFLFHKFK 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+LS +LV+ ++ +++A L+L +FI +S + + SI +D E+LI Sbjct: 61 NEAEGDLSKLRAALVNEKSFAKIATSLNLGAFIFMSIAEQNNGGKTKPSILSDAFEALIG 120 Query: 125 ALYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 AL+L+ G E+A +++ + KS +D KT+LQE AK G+TPEY+ Sbjct: 121 ALHLEAGFIKAKEIALRLIEENFPNIDAKS--LFKDYKTKLQEITQAKMGLTPEYETLRA 178 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 179 FGPDHQKSFEIALNLEGKEMARAIASSKKEAQQMAAKLTLEKLG 222 >gi|163802958|ref|ZP_02196845.1| ribonuclease III [Vibrio sp. AND4] gi|159173248|gb|EDP58076.1| ribonuclease III [Vibrio sp. AND4] Length = 226 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/217 (36%), Positives = 118/217 (54%), Gaps = 6/217 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++GY F + L+ ALTH S + + E RLEFLGD IL +I+ L++ F E Sbjct: 8 LERKLGYQFKDAGLINLALTHRSANSKHNE---RLEFLGDSILSFVIADELYHRFPKVNE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++ RE DL ++++ K SI AD VE++I A+YL Sbjct: 65 GDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D IE V ++ R A+K G ++D KT LQE+ + P Y VT G H+ Sbjct: 125 DSDIEAVRGIVLSWYHSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHN 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 FTV +++G+ P G S+R AEQ AA L++ Sbjct: 185 QEFTVECDVAGVDKPVIGKGTSRRKAEQAAAETALEQ 221 >gi|187933552|ref|YP_001885438.1| ribonuclease III [Clostridium botulinum B str. Eklund 17B] gi|238691613|sp|B2TJ22|RNC_CLOBB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|187721705|gb|ACD22926.1| ribonuclease III [Clostridium botulinum B str. Eklund 17B] Length = 232 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 4/226 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTL 58 M+ +++ +E R+G F N SL++ ALTHSS + ++++ ERLEFLGD +L L I+ Sbjct: 1 MNRYKFNDIENRLGVYFNNPSLIKTALTHSSFGNQFKDAKYNERLEFLGDSVLQLCITEY 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LFN F EGEL+ + +V + ++A++L L +IR+S SIQAD Sbjct: 61 LFNKFKDKSEGELTKIRSLIVCENSLYEIAKKLSLGEYIRMSKGEELTGGRERMSIQADA 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYK 176 VE++IAA+YLD GI F+ ++++ K + + D KT+LQE + +Y+ Sbjct: 121 VEAVIAAVYLDKGIGFVNDFILLHFEEMINKAINNEIVLDFKTKLQELLQKDGEILIQYE 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + GP H +F V I+ G SK+ AEQ AA E LKR Sbjct: 181 LVKYEGPPHRRKFFTNVIINEKVMGIGEGYSKKEAEQNAAKEALKR 226 >gi|171057289|ref|YP_001789638.1| ribonuclease III [Leptothrix cholodnii SP-6] gi|170774734|gb|ACB32873.1| Ribonuclease III [Leptothrix cholodnii SP-6] Length = 228 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 127/225 (56%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS TL+ R+G+ F ++SLL +A++H S + E RLEFLGD +L + +S LLF Sbjct: 1 MSTYPLDTLQARLGHVFRDQSLLLRAVSHRSHGADHNE---RLEFLGDAVLNMTVSDLLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + FD + EG+L+ LV + ++A L L + +R+S + + SI AD +E Sbjct: 58 DQFDDSPEGDLTRVRAHLVRQDMLHRLALSLQLPAVLRLSDGEARAGGAQRPSILADAME 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+Y D G E A V + ++ + + + +DAKT+LQEW A+ PEY++ Sbjct: 118 AVIGAVYRDAGYEAAQALVRRLFEPLVSETVTQAWAKDAKTQLQEWLQARRQSVPEYRIE 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD F VV ++G A+G S+RAAEQ AA VL++ Sbjct: 178 TTRGRAHDQTFVVVCSVAGPGIEARGEGRSRRAAEQEAARLVLEQ 222 >gi|262404774|ref|ZP_06081329.1| ribonuclease III [Vibrio sp. RC586] gi|262349806|gb|EEY98944.1| ribonuclease III [Vibrio sp. RC586] Length = 225 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 6/219 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + + E RLEFLGD IL +I+ L+ F Sbjct: 6 NKLTSKLGYTFKEIELLNLALTHRSANGKHNE---RLEFLGDSILSFVIADELYRRFPKV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 63 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A + V +++ R +K G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSDLETARSIVLEWYHGRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQ 221 >gi|121728984|ref|ZP_01681988.1| ribonuclease III [Vibrio cholerae V52] gi|147674970|ref|YP_001217963.1| ribonuclease III [Vibrio cholerae O395] gi|153214513|ref|ZP_01949422.1| ribonuclease III [Vibrio cholerae 1587] gi|153803086|ref|ZP_01957672.1| ribonuclease III [Vibrio cholerae MZO-3] gi|153826905|ref|ZP_01979572.1| ribonuclease III [Vibrio cholerae MZO-2] gi|153830879|ref|ZP_01983546.1| ribonuclease III [Vibrio cholerae 623-39] gi|229514087|ref|ZP_04403549.1| ribonuclease III [Vibrio cholerae TMA 21] gi|229521288|ref|ZP_04410708.1| ribonuclease III [Vibrio cholerae TM 11079-80] gi|229524448|ref|ZP_04413853.1| ribonuclease III [Vibrio cholerae bv. albensis VL426] gi|229527069|ref|ZP_04416464.1| ribonuclease III [Vibrio cholerae 12129(1)] gi|254226246|ref|ZP_04919839.1| ribonuclease III [Vibrio cholerae V51] gi|254291661|ref|ZP_04962449.1| ribonuclease III [Vibrio cholerae AM-19226] gi|297581085|ref|ZP_06943010.1| ribonuclease III [Vibrio cholerae RC385] gi|189043374|sp|A5F5H8|RNC_VIBC3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|121628750|gb|EAX61217.1| ribonuclease III [Vibrio cholerae V52] gi|124115315|gb|EAY34135.1| ribonuclease III [Vibrio cholerae 1587] gi|124121368|gb|EAY40111.1| ribonuclease III [Vibrio cholerae MZO-3] gi|125621219|gb|EAZ49560.1| ribonuclease III [Vibrio cholerae V51] gi|146316853|gb|ABQ21392.1| ribonuclease III [Vibrio cholerae O395] gi|148873648|gb|EDL71783.1| ribonuclease III [Vibrio cholerae 623-39] gi|149739268|gb|EDM53530.1| ribonuclease III [Vibrio cholerae MZO-2] gi|150422433|gb|EDN14392.1| ribonuclease III [Vibrio cholerae AM-19226] gi|227014353|gb|ACP10563.1| ribonuclease III [Vibrio cholerae O395] gi|229335466|gb|EEO00948.1| ribonuclease III [Vibrio cholerae 12129(1)] gi|229338029|gb|EEO03046.1| ribonuclease III [Vibrio cholerae bv. albensis VL426] gi|229341820|gb|EEO06822.1| ribonuclease III [Vibrio cholerae TM 11079-80] gi|229349268|gb|EEO14225.1| ribonuclease III [Vibrio cholerae TMA 21] gi|297534911|gb|EFH73747.1| ribonuclease III [Vibrio cholerae RC385] Length = 225 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 6/219 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + + E RLEFLGD IL +I+ L+ F Sbjct: 6 NKLTSKLGYTFKETELLNLALTHRSANGKHNE---RLEFLGDSILSFVIADELYRRFPKV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 63 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A V ++++ R +K G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSDLETARRIVLEWYQCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQ 221 >gi|262167292|ref|ZP_06035002.1| ribonuclease III [Vibrio cholerae RC27] gi|262190709|ref|ZP_06048940.1| ribonuclease III [Vibrio cholerae CT 5369-93] gi|262024267|gb|EEY42958.1| ribonuclease III [Vibrio cholerae RC27] gi|262033421|gb|EEY51928.1| ribonuclease III [Vibrio cholerae CT 5369-93] gi|327484953|gb|AEA79360.1| Ribonuclease III [Vibrio cholerae LMA3894-4] Length = 221 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 6/219 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + + E RLEFLGD IL +I+ L+ F Sbjct: 2 NKLTSKLGYTFKETELLNLALTHRSANGKHNE---RLEFLGDSILSFVIADELYRRFPKV 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 59 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A V ++++ R +K G ++D KT LQE+ + P Y VT G Sbjct: 119 YLDSDLETARRIVLEWYQCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQ 217 >gi|24217145|ref|NP_714628.1| ribonuclease III [Leptospira interrogans serovar Lai str. 56601] gi|45655649|ref|YP_003458.1| dsRNase III [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|59798574|sp|Q75FW5|RNC_LEPIC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|59798588|sp|Q8EXX3|RNC_LEPIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|24202183|gb|AAN51643.1| ribonuclease 3 [Leptospira interrogans serovar Lai str. 56601] gi|45602620|gb|AAS72095.1| dsRNase III [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 247 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 116/219 (52%), Gaps = 5/219 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65 L K+IG F+ A HSS + QE ERLEFLGD +LGL+ + LF + Sbjct: 24 LSKKIGIKFSKVEYYNTAFIHSSYKNENQEILEDNERLEFLGDSVLGLVAARSLFRKYPK 83 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EGELS + +VS + ++ +L+L+ ++ + + + + A++ ESL+ A Sbjct: 84 ANEGELSRIKSRIVSTPILNSISEKLELSEYLLLGKGEKNSLGKGRRKLSANLFESLVGA 143 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD G E+A F+ ++ + K RD KT+LQE++ F + P Y+ SGP Sbjct: 144 IYLDQGFEIAEKFILRHLSEFVENPEKEESVRDYKTQLQEYSQKHFKILPIYRTKSESGP 203 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 DH F VVV I A G SK++AEQ AA E+ R Sbjct: 204 DHAKTFQVVVRIRDQWEASGSGVSKKSAEQNAAKELYNR 242 >gi|109947401|ref|YP_664629.1| ribonuclease III [Helicobacter acinonychis str. Sheeba] gi|122973320|sp|Q17XJ6|RNC_HELAH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|109714622|emb|CAJ99630.1| ribonuclease III (RNase III) [Helicobacter acinonychis str. Sheeba] Length = 234 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 126/225 (56%), Gaps = 9/225 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 13 YITLEKALGYSFKDKHLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 70 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA+ +++AR + L ++RVSS SI + E+L+A Sbjct: 71 YDEGKLSKLRASIVSAQGFTKLARAISLQDYLRVSSSEETSKGREKPSILSSAFEALMAG 130 Query: 126 LYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G++ + +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 131 VYLEAGLDKVRKIMQNLLNRAYKRLDLEH--LSVDYKTALQELTQAQFCVIPTYQLLKEK 188 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR-EGI 225 GP H F +V+ I A SK+ AEQ A + L++ +GI Sbjct: 189 GPAHHKEFEMVLYIQNQMYATAKGKSKKEAEQQCAYQALQKLKGI 233 >gi|188589361|ref|YP_001920585.1| ribonuclease III [Clostridium botulinum E3 str. Alaska E43] gi|251778911|ref|ZP_04821831.1| ribonuclease III [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|238689672|sp|B2V4D6|RNC_CLOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|188499642|gb|ACD52778.1| ribonuclease III [Clostridium botulinum E3 str. Alaska E43] gi|243083226|gb|EES49116.1| ribonuclease III [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 232 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 4/226 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTL 58 M+ +++ +E R+G F N SL++ ALTHSS + ++++ ERLEFLGD +L L I+ Sbjct: 1 MNRYKFNDIENRLGVYFNNPSLIKTALTHSSFGNQFKDAKYNERLEFLGDSVLQLCITEY 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LFN F EGEL+ + +V + ++A++L L +IR+S SIQAD Sbjct: 61 LFNKFKDKSEGELTKIRSLIVCENSLYEIAKKLSLGEYIRMSKGEELTGGRERMSIQADA 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYK 176 VE++IAA+YLD GI F+ ++++ K + + D KT+LQE + +Y+ Sbjct: 121 VEAVIAAVYLDKGIGFVNDFILLHFEEMINKAINNEIVLDFKTKLQELLQKDGEILIQYE 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + GP H +F V I+ G SK+ AEQ AA E LKR Sbjct: 181 LLKYEGPPHRRKFFTNVIINEKVMGIGEGYSKKEAEQNAAKEALKR 226 >gi|304316939|ref|YP_003852084.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778441|gb|ADL69000.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 232 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 122/226 (53%), Gaps = 5/226 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 +Y LEK IGY F N+ LL+ AL HSS ++ + S ERLEFLGD +L ++IS L+ Sbjct: 6 KYENLEKNIGYVFNNKKLLKNALAHSSWANESKNIGISNERLEFLGDSVLSIIISEYLYK 65 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +EG LS + +V + ++ ARE++L ++ + SI AD +E+ Sbjct: 66 SRSDLEEGYLSKYRSEIVCEPSLARCAREIELGKYLLMGKGEEMTGGRNRESILADAMEA 125 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LIAA+YLD ++ A V + + + + + SG RD KT+LQE YK+T Sbjct: 126 LIAAIYLDSDLKTASDIVLRLFDEIIKEVLSGLIYRDYKTKLQEVTQKMGSEKIIYKLTD 185 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDH+ F + V + +GM SK+ AEQ AA E L + G+ Sbjct: 186 EYGPDHNKMFVIEVYVGENRLGRGMGRSKKEAEQYAAMEALSKMGL 231 >gi|254779351|ref|YP_003057456.1| ribonuclease III [Helicobacter pylori B38] gi|254001262|emb|CAX29239.1| Ribonuclease III (RNase III) [Helicobacter pylori B38] Length = 232 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 124/221 (56%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 11 YTTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 68 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 69 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 128 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 129 VYLEAGLAKVRKIMQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLQEK 186 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A +VL++ Sbjct: 187 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQVLQK 227 >gi|85712960|ref|ZP_01043999.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina baltica OS145] gi|85693198|gb|EAQ31157.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina baltica OS145] Length = 228 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 122/219 (55%), Gaps = 6/219 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LE+ IGY F +SLL++ALTH S ++ ERLEFLGD ILG++I+ LF+ F Sbjct: 9 TQLEQIIGYRFERQSLLKQALTHRS---AHANHNERLEFLGDSILGVVIAEALFSRFPKV 65 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS ++V + +++ ++ L ++ + K SI AD +E++I A+ Sbjct: 66 AEGDLSRMRAAIVCGRSLARLGKKKGLGDYLSLGQGELKSGGYRRESILADAMEAIIGAI 125 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LD ++ V +++++ +K G ++D KT LQEW A+ PEY V G Sbjct: 126 FLDSDMDTVKQVVLGWFEEQLETIKPGASQKDPKTRLQEWLQARQRPLPEYDVVATQGQA 185 Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 H+ +FTV I GL P G S+R AEQ AA L++ Sbjct: 186 HNQQFTVTCTIEGLPEPLLGTGTSRRKAEQAAATSALEQ 224 >gi|291165574|gb|EFE27623.1| ribonuclease III [Filifactor alocis ATCC 35896] Length = 229 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/220 (39%), Positives = 123/220 (55%), Gaps = 8/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSS-ISHSYQESY---ERLEFLGDRILGLLISTLLFNHFD 64 +K+IGY F + LL +ALTH+S I+ + ++ ERLEFLGD ILG+++ST LF Sbjct: 7 FQKKIGYTFQDEKLLREALTHTSYINENRNKNLRPNERLEFLGDSILGVVVSTYLFEKRK 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGELS S+V ++ VA+ LD S+I + SI AD+VE+LIA Sbjct: 67 DLPEGELSKIRASIVCEDSLQLVAKRLDAGSYIYMGKGEEMTGGRTRHSILADMVEALIA 126 Query: 125 ALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLDGG++ A F+ + + +RA K G +D KT LQE K + EY+V Sbjct: 127 AIYLDGGMKAASKFIFLFMEDVMKRATK-GDMDKDYKTRLQEIVQQKPDRSIEYRVIGEK 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDH F V + + A G SK+ AE+ AA + L+ Sbjct: 186 GPDHRKIFVVELLVDKKQVAVGEGYSKKEAEKQAAKKALQ 225 >gi|78778218|ref|YP_394533.1| ribonuclease III [Sulfurimonas denitrificans DSM 1251] gi|78498758|gb|ABB45298.1| RNAse III [Sulfurimonas denitrificans DSM 1251] Length = 226 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/217 (36%), Positives = 123/217 (56%), Gaps = 8/217 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ +GY F N+ L+ +ALTH S Y ERLEFLGD +L L++ LF F S+ E Sbjct: 8 LEEILGYKFKNQKLIIEALTHKSHKQPYDN--ERLEFLGDAVLDLIVGEYLFFKFASSDE 65 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS +LV+ + ++AR ++L +I +S+ + S+ ++ E++I A+YL Sbjct: 66 GTLSKIRAALVNEDGFERLARSINLGEYIYLSNAEENNGGREKASLLSNAFEAMIGAIYL 125 Query: 129 DGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G++ +A +++ +++ +L S RD KT LQE A+FG TPEY V GPD Sbjct: 126 ESGLDIVKPIAIGIIERNYQEISLDS--LFRDYKTTLQELTQARFGETPEYIVVASRGPD 183 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H F V V I G A+ + SK+ A+Q AA +K Sbjct: 184 HKKEFEVAVIIEGKEYARAIGKSKKIAQQEAAEMAVK 220 >gi|57506125|ref|ZP_00372047.1| ribonuclease III (rnc) [Campylobacter upsaliensis RM3195] gi|57015609|gb|EAL52401.1| ribonuclease III (rnc) [Campylobacter upsaliensis RM3195] Length = 224 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 8/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE ++ Y F + LL ALTH S +Y ERLEFLGD +L L++ LF+ F Sbjct: 3 KLELLEAKLNYKFKEQKLLIYALTHKSAKKNYNN--ERLEFLGDAVLDLVVGEFLFHKFK 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+LS +LV+ ++ +++A L+L FI +S + + SI +D E+LI Sbjct: 61 NEAEGDLSKLRAALVNEKSFAKIATSLNLGDFIFMSIAEQNNGGKTKPSILSDTFEALIG 120 Query: 125 ALYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 AL+L+ G E+A +++ + KS +D KT+LQE AK G+TPEY+ Sbjct: 121 ALHLEAGFIKAKEIALRLIEENFPNIDAKS--LFKDYKTKLQEITQAKMGLTPEYETQRA 178 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 179 FGPDHQKSFEIALNLEGKEMARAIASSKKEAQQMAAKLTLEKLG 222 >gi|307722018|ref|YP_003893158.1| RNAse III [Sulfurimonas autotrophica DSM 16294] gi|306980111|gb|ADN10146.1| RNAse III [Sulfurimonas autotrophica DSM 16294] Length = 227 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 126/223 (56%), Gaps = 11/223 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 TLE+++GY F ++ L+ +ALTH S Y ERLEFLGD +L L++ LF F ++ Sbjct: 7 TLEEKLGYEFKDKKLIIEALTHKSYKQPYDN--ERLEFLGDAVLDLVVGEYLFRKFRTSD 64 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS SLV+ ++AR L L +I +S+ + +S+ ++ E+++ A+Y Sbjct: 65 EGKLSKIRASLVNETGFDKLARALHLGDYILLSNAEDNNGGREKSSLLSNAFEAIMGAVY 124 Query: 128 LDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 L+ G+ +A ++K ++ +L S RD KT LQE A+FG+TPEYKV GP Sbjct: 125 LEAGLGEVQRIAIDLIEKNHEEISLDS--LFRDFKTTLQELTQARFGITPEYKVLASRGP 182 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA---AAEVLKRE 223 DH F V V I A+ SK+ A+Q A A E+L +E Sbjct: 183 DHQKEFEVGVFIEDKEYARANGKSKKIAQQEAARVAVELLNKE 225 >gi|297620496|ref|YP_003708633.1| ribonuclease III [Waddlia chondrophila WSU 86-1044] gi|297375797|gb|ADI37627.1| ribonuclease III [Waddlia chondrophila WSU 86-1044] Length = 252 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 120/222 (54%), Gaps = 8/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 S +E +IG+ F ++ LL A TH S ++ E ERLE+LGD ILG LI+ L+ + Sbjct: 21 SEIEAKIGHTFKDKQLLSLAFTHRSYINENNDAHEHNERLEYLGDSILGFLIAEYLYKYL 80 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EGELS + LV A +C ++LDL ++ + + + SI AD+ ESLI Sbjct: 81 PNTPEGELSYLRSRLVEASSCVIYVQKLDLEQYLLLGKGEQMNDGRGRDSILADLFESLI 140 Query: 124 AALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 A+YLDGG++ A F+ K + + LK+ + K +LQ++ K+ P YKV Sbjct: 141 GAIYLDGGMDAARLFLFKNFSKEIEEILKTPIC--NWKAQLQDYCQKKYRHPPLYKVVSE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGPDH FT+ V I+ G SK+ A+Q AA + R Sbjct: 199 SGPDHQKIFTISVLINNQEVGHGEGPSKKEAQQAAAKDAFSR 240 >gi|254448879|ref|ZP_05062335.1| ribonuclease III [gamma proteobacterium HTCC5015] gi|198261569|gb|EDY85858.1| ribonuclease III [gamma proteobacterium HTCC5015] Length = 225 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 121/225 (53%), Gaps = 10/225 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 STL+ + Y F+N LLE A+TH S S + + ERLEFLGD IL ++ LF F Sbjct: 3 STLQSTLNYTFSNGDLLEVAVTHRSASKT---NNERLEFLGDSILNFTVAAELFERFPER 59 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS SLV + + A+++DL F+++ K SI AD VE++I A+ Sbjct: 60 PEGDLSRLRASLVDKSSLAAHAKKMDLGPFLKLGGGELKSGGWRRDSILADAVEAIIGAI 119 Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLDGGIE A F+ + +L + +DAKT LQEW + P+Y++ SG Sbjct: 120 YLDGGIESAQQFIRDLYDGDFESLPTANELKDAKTRLQEWLQGRHYALPQYEMVEVSGKP 179 Query: 185 HDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAA----AEVLKREG 224 H+ +FTV I S S+R AEQ AA A++L +EG Sbjct: 180 HEQQFTVSCYIDSHDVQVNATGRSRRKAEQAAAETALAQLLDQEG 224 >gi|301058150|ref|ZP_07199202.1| ribonuclease III [delta proteobacterium NaphS2] gi|300447782|gb|EFK11495.1| ribonuclease III [delta proteobacterium NaphS2] Length = 236 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 126/233 (54%), Gaps = 12/233 (5%) Query: 1 MSALR----YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILG 52 M AL+ + +L + +GY+F + +L+ +A HSS + E ERLEFLGD +L Sbjct: 1 MGALQADKEFKSLCETLGYSFNDIALVIQAFRHSSYVNEQMVPGLEDNERLEFLGDAVLD 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAET-CSQVARELDLASFIRVSSDLRKDVCSFM 111 L +S LL A EGELS RF S+V E VA L+L ++ + + + Sbjct: 61 LAVSHLLMERNPHANEGELS-RFRSMVVDEAGLHDVATRLELGRYLLLGKGEDQSLGRQK 119 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKF 169 SI ADV E+L+ A+YLDGG ++ ++K + K G +D K+ LQE+ F Sbjct: 120 PSILADVTEALLGAIYLDGGFDITKKVIEKLFAPLLEKVGTDDLVQDYKSLLQEFTQQAF 179 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P+Y++T GP HD F +V+ ++G+ A+GM SK+ AEQ AA E R Sbjct: 180 KCLPQYRLTEEKGPAHDKVFCIVLAVNGIVMAEGMGKSKKEAEQHAAKEAFLR 232 >gi|262170590|ref|ZP_06038268.1| ribonuclease III [Vibrio mimicus MB-451] gi|261891666|gb|EEY37652.1| ribonuclease III [Vibrio mimicus MB-451] Length = 221 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 6/219 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + + E RLEFLGD IL +I+ L++ F Sbjct: 2 NKLTSKLGYTFKEIELLNLALTHRSANGKHNE---RLEFLGDSILSFVIADELYHRFPKV 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 59 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A V +++ R +K G ++D KT LQE+ + P Y VT G Sbjct: 119 YLDSDLETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQ 217 >gi|261416404|ref|YP_003250087.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372860|gb|ACX75605.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326232|gb|ADL25433.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85] Length = 270 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/214 (35%), Positives = 118/214 (55%), Gaps = 6/214 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE ++GY F + LL AL H S Y + ERLEFLGD +L +L + L+ + Sbjct: 23 LEAKLGYRFRDPELLAHALVHRSFLVGKDVPYASNNERLEFLGDSVLNMLTTEFLYRTYP 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S EGELS R +++VS C+Q ++E DL+ ++++ K SI AD E+++ Sbjct: 83 SDPEGELSKRKSAIVSGHACAQSSKEWDLSEYVKIGKSEAKMGGRGKESILADAYEAVLG 142 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLDGG+E ++K+ R + S + K+EL E+ K +PEY + G Sbjct: 143 AVYLDGGLEEVRAILNKFHFPRVQEIISATDFVNYKSELLEFCQGKLRCSPEYVIVGEEG 202 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 P+H FTV V ++G + A+G +K+ AEQ A+ Sbjct: 203 PEHQKVFTVEVVVNGKSYARGQGPNKKKAEQEAS 236 >gi|114564093|ref|YP_751607.1| ribonuclease III [Shewanella frigidimarina NCIMB 400] gi|122299035|sp|Q07YZ6|RNC_SHEFN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|114335386|gb|ABI72768.1| RNAse III [Shewanella frigidimarina NCIMB 400] gi|211926923|dbj|BAG82671.1| ribonuclease III [Shewanella sp. SIB1] Length = 226 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 84/216 (38%), Positives = 122/216 (56%), Gaps = 6/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + +GY F N LL +ALTH S ++ + E RLEFLGD IL + IS L++ F A E Sbjct: 10 LCRTLGYEFNNIELLIQALTHRSAANKHNE---RLEFLGDSILSIAISDALYHQFPKATE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV +T + +A+E L ++ + K SI AD VE++I A+YL Sbjct: 67 GDLSRMRATLVKGDTLTIIAKEFKLGDYLYLGPGELKSGGFRRESILADAVEAIIGAVYL 126 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D IEV + ++++R +K G ++D KT LQE+ P+Y+V G HD Sbjct: 127 DADIEVCRKLLLSWYQERLAEIKPGINQKDPKTILQEYLQGFKKPLPDYQVVAVEGEAHD 186 Query: 187 PRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 FTV +IS L G+ S+R AEQ+AAA+VL+ Sbjct: 187 QTFTVECKISELDKVVTGVASSRRKAEQLAAAQVLE 222 >gi|332532635|ref|ZP_08408511.1| ribonuclease III [Pseudoalteromonas haloplanktis ANT/505] gi|332037851|gb|EGI74300.1| ribonuclease III [Pseudoalteromonas haloplanktis ANT/505] Length = 225 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/217 (37%), Positives = 120/217 (55%), Gaps = 5/217 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L K+IGY FA++ LLE+A+TH S H Q + ERLEFLGD IL +I+ L+ F A Sbjct: 6 TELYKKIGYEFADQGLLEQAMTHRS--HKGQHN-ERLEFLGDSILSFVIANALYAKFPKA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS ++LV +T ++ E L ++R+ K S AD VE++I A Sbjct: 63 REGDLSRMRSTLVRGQTLAEFGLEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIGAA 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LD GI+ G + +++ R A+ G ++D KT LQE+ A+ P Y V G Sbjct: 123 FLDSGIDSCGDLILSWYESRLDAISPGLNQKDPKTLLQEYLQARKLSLPGYTVVDTKGQA 182 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H+ FTV + G+ + S+R AEQ AA + LK Sbjct: 183 HNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALK 219 >gi|315127397|ref|YP_004069400.1| RNase III, ds RNA [Pseudoalteromonas sp. SM9913] gi|315015911|gb|ADT69249.1| RNase III, ds RNA [Pseudoalteromonas sp. SM9913] Length = 225 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/217 (37%), Positives = 121/217 (55%), Gaps = 5/217 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L KRIGY FA++ LLE+A+TH S H Q + ERLEFLGD IL +I+ L+ F A Sbjct: 6 TELYKRIGYTFADQGLLEQAMTHRS--HKGQHN-ERLEFLGDSILSFVIANALYAKFPKA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS ++LV +T ++ E +L ++R+ K S AD VE++I A+ Sbjct: 63 REGDLSRMRSTLVRGQTLAEFGLEFELGDYLRLGPGELKSGGFRRESTLADAVEAIIGAV 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LD I+ G + +++ R A+ G ++D KT LQE+ A+ P Y V G Sbjct: 123 FLDSDIDRCGELILAWYESRLDAISPGLNQKDPKTLLQEYLQARKLSLPGYTVVDTKGQA 182 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H+ FTV + G+ + S+R AEQ AA + LK Sbjct: 183 HNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALK 219 >gi|304398620|ref|ZP_07380492.1| ribonuclease III [Pantoea sp. aB] gi|304353831|gb|EFM18206.1| ribonuclease III [Pantoea sp. aB] Length = 226 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 126/228 (55%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPILINKLQRKLGYTFTHSELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD GIE + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSGIERVEQLILDWYQSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225 G HD FT+ ++SG+A P G+ S+R AEQ AA + L + G+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRKAEQAAAEQALIKLGL 225 >gi|148284924|ref|YP_001249014.1| ribonuclease III [Orientia tsutsugamushi str. Boryong] gi|146740363|emb|CAM80798.1| ribonuclease III [Orientia tsutsugamushi str. Boryong] Length = 251 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 130/219 (59%), Gaps = 12/219 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ IGY F + LL +ALTH SI+ + Y ++Y+RLEFLGD IL L+IS LF +F Sbjct: 27 LQSEIGYNFNSIDLLIEALTHPSINQYGYTKNYQRLEFLGDVILNLVISETLFKNFSHYN 86 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC---SFMTSIQADVVESLIA 124 EG+L+ LV E+ +A++++L +I ++++ K C S +I+ + +E++I Sbjct: 87 EGKLAKSRAFLVCNESICLIAQKINLHKYIIMTANEEK--CGGRSNKNNIE-NTMEAVIG 143 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAK-FGVTPEYKVTFRS 181 A+YLDGGI V V+ WK +K + D K+ LQEW+ +K FG+ P Y ++ ++ Sbjct: 144 AVYLDGGIHVIKDIVNSLWK-VLIKDHELYLIADPKSALQEWSQSKNFGI-PTYTLSSKT 201 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 G H P F V+V++ L P G + + A++ AA +L Sbjct: 202 GQSHSPLFEVMVKVGRLEPQYGKGTTIKTAQKNAAQLML 240 >gi|258622345|ref|ZP_05717370.1| Ribonuclease 3 [Vibrio mimicus VM573] gi|258626729|ref|ZP_05721551.1| Ribonuclease 3 [Vibrio mimicus VM603] gi|258580985|gb|EEW05912.1| Ribonuclease 3 [Vibrio mimicus VM603] gi|258585361|gb|EEW10085.1| Ribonuclease 3 [Vibrio mimicus VM573] Length = 225 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 6/219 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + + E RLEFLGD IL +I+ L++ F Sbjct: 6 NKLTSKLGYTFKEIELLNLALTHRSANGKHNE---RLEFLGDSILSFVIADELYHRFPKV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 63 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A V +++ R +K G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSDLETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQ 221 >gi|197285743|ref|YP_002151615.1| ribonuclease III [Proteus mirabilis HI4320] gi|238693201|sp|B4F047|RNC_PROMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|194683230|emb|CAR43912.1| RNase III, ds RNA [Proteus mirabilis HI4320] Length = 226 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 115/212 (54%), Gaps = 6/212 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L + L+K++GY F LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNTLLVNQLQKKLGYTFKQNELLLQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A++LD I+ + K+++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGAIFLDSDIQNIENIILKWYENRLAEISPGDKQKDPKTRLQEYLQGRHLPLPSYVVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKR 209 G HD FT+ +ISG+ P +GM S+R Sbjct: 178 QVRGEAHDQEFTIHCQISGIDQPVKGMGTSRR 209 >gi|261211555|ref|ZP_05925843.1| ribonuclease III [Vibrio sp. RC341] gi|260839510|gb|EEX66136.1| ribonuclease III [Vibrio sp. RC341] Length = 221 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 116/219 (52%), Gaps = 6/219 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + + E RLEFLGD IL +I+ L+ F Sbjct: 2 NKLTSKLGYTFKETELLNLALTHRSANGKHNE---RLEFLGDSILSFVIADELYRRFPKV 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 59 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A V +++ R +K G ++D KT LQE+ + P Y VT G Sbjct: 119 YLDSELETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQ 217 >gi|313114998|ref|ZP_07800491.1| ribonuclease III [Faecalibacterium cf. prausnitzii KLE1255] gi|310622689|gb|EFQ06151.1| ribonuclease III [Faecalibacterium cf. prausnitzii KLE1255] Length = 224 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 120/221 (54%), Gaps = 9/221 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 LE IGY F N LLE ALTH+S ++ + + ERLEFLGD +L ++ + LF+ + Sbjct: 5 LETIIGYKFKNPELLEIALTHTSYANESRTPVKHNERLEFLGDSVLQIVSADYLFHAYAD 64 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ SLVS Q A+E+DL ++R+ + S+ +D E+LIAA Sbjct: 65 RPEGDLTRIRASLVSEGALFQFAQEIDLGEYLRLGRGEERCGGRTRPSVVSDAFEALIAA 124 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LYLDGG++VA +F+ + + GK D KT LQE Y V SGPD Sbjct: 125 LYLDGGMDVARSFILPF-----ITEGKHAEADYKTRLQEIVQQNPEERLSYVVESESGPD 179 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 HD F V V + A+G SK+AAEQ AA E LK G+ Sbjct: 180 HDKHFVVAVRFNSDRVARGEGRSKKAAEQCAAKEALKLLGV 220 >gi|283781424|ref|YP_003372179.1| ribonuclease III [Pirellula staleyi DSM 6068] gi|283439877|gb|ADB18319.1| ribonuclease III [Pirellula staleyi DSM 6068] Length = 273 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/213 (36%), Positives = 116/213 (54%), Gaps = 3/213 (1%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E+R+GY F ++ LL ALTH+S + S ERLEFLGD ILG+ + +L+ F EG Sbjct: 49 ERRLGYVFNSKPLLRSALTHASGAEHRLASNERLEFLGDAILGVYVCEMLYRQFPDYLEG 108 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +L+ + +VS +TC++V+ L L F+ + + + S+ ADV ESLIAA+YLD Sbjct: 109 DLTKVKSVVVSRQTCAKVSEALGLQEFLILGKGMSSSP-NVPPSLLADVFESLIAAIYLD 167 Query: 130 GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG + A F++ Y +G+ + K+ LQ++A + G TP Y + GPDH Sbjct: 168 GGEQAARQFINNYIGPEVELAAAGELGGNYKSLLQQFAQRECGNTPTYHLLDEKGPDHSK 227 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F + + G +K+ AEQ AA L Sbjct: 228 CFKISASVGGKKYQAAWGRNKKEAEQRAANNAL 260 >gi|88797948|ref|ZP_01113535.1| ribonuclease III [Reinekea sp. MED297] gi|88779145|gb|EAR10333.1| ribonuclease III [Reinekea sp. MED297] Length = 219 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 124/219 (56%), Gaps = 6/219 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 + K IGY F + SLLE+ALTH S + +++ ERLEFLGD IL I+ L++ F +AKE Sbjct: 1 MTKAIGYQFESESLLEQALTHRSYA---RKNNERLEFLGDAILNCTIAQALYHQFPNAKE 57 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S LV +T +++ RE +L F+R+ S K SI AD VE++I A+ L Sbjct: 58 GQMSRLRAHLVKGDTLAEIGREFELGEFLRLGSGELKSGGFRRDSILADAVEAIIGAISL 117 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D + A + ++++R L + +D+KT LQE+ A+ PEY+V +G H Sbjct: 118 DADLGKAQQVLLSWYEERLSNLDLKENIKDSKTRLQEFLQARRLPLPEYQVKTITGEAHQ 177 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224 FTV ++ L P G+ S+R AEQ AA LK G Sbjct: 178 QEFTVHCQVESLETPMVGVGSSRRMAEQEAANAALKALG 216 >gi|160946001|ref|ZP_02093227.1| hypothetical protein FAEPRAM212_03534 [Faecalibacterium prausnitzii M21/2] gi|158443732|gb|EDP20737.1| hypothetical protein FAEPRAM212_03534 [Faecalibacterium prausnitzii M21/2] gi|295103252|emb|CBL00796.1| RNAse III [Faecalibacterium prausnitzii SL3/3] Length = 224 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 119/221 (53%), Gaps = 9/221 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 LE IGY F N LLE ALTH+S ++ + + ERLEFLGD +L ++ + LF+ + Sbjct: 5 LETIIGYKFKNPELLEIALTHTSYANESRTPVKHNERLEFLGDSVLQIVSADYLFHAYAD 64 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ SLVS Q A+E+DL ++R+ + S+ +D E++IAA Sbjct: 65 RPEGDLTRIRASLVSESALFQFAQEIDLGEYLRLGRGEERCGGRTRPSVVSDAFEAVIAA 124 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LYLDGG+EVA F+ + + GK D KT LQE Y V SGPD Sbjct: 125 LYLDGGMEVARKFILPF-----ITEGKHAEADYKTRLQEIVQQNPEERLSYVVESESGPD 179 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 HD F V V + A+G SK+AAEQ AA E LK G+ Sbjct: 180 HDKHFVVAVRFNSDRVARGEGRSKKAAEQCAAKEALKLLGV 220 >gi|320104374|ref|YP_004179965.1| RNAse III [Isosphaera pallida ATCC 43644] gi|319751656|gb|ADV63416.1| RNAse III [Isosphaera pallida ATCC 43644] Length = 238 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 78/218 (35%), Positives = 128/218 (58%), Gaps = 7/218 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 ++ E+ IG++F +R LL ALTHSS + S ERLEFLGD +LG+++ LF+ F A Sbjct: 11 ASCERVIGHSFQDRGLLRAALTHSSRAVHPLASNERLEFLGDSVLGMIVCDTLFHLFPEA 70 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 KEG+L+ + +VS +TC+++AR+L L +++ + + + +++ A+V ES++ A+ Sbjct: 71 KEGDLTRIKSVVVSRQTCTKIARKLGLQNYLLLGKGMGPSSQAPASTL-ANVFESVVGAI 129 Query: 127 YLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G E A FV + + + K+ + + + K++LQ++A G TP Y + GPD Sbjct: 130 YLDSGFEAARRFVLNNLLPEIESSKNEESQGNYKSQLQQYAQKNHGTTPTYHLLEEKGPD 189 Query: 185 HDPRFTVVVEISG--LAPAQGMDCSKRAAEQVAAAEVL 220 H F ++ I PA G +K+ AEQ AA L Sbjct: 190 HRKCFKILARIGSHQFPPAWGQ--TKKDAEQRAAQNAL 225 >gi|262166502|ref|ZP_06034239.1| ribonuclease III [Vibrio mimicus VM223] gi|262026218|gb|EEY44886.1| ribonuclease III [Vibrio mimicus VM223] Length = 225 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 6/219 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + + E RLEFLGD IL +I+ L++ F Sbjct: 6 NKLTSKLGYTFKEIELLNLALTHRSANGKHNE---RLEFLGDSILSFVIADELYHRFPKV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 63 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A V +++ R +K G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSELETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQ 221 >gi|221135073|ref|ZP_03561376.1| ribonuclease III [Glaciecola sp. HTCC2999] Length = 241 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 125/220 (56%), Gaps = 6/220 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + L++ I Y F + SLL++ALTH S ++++ ERLEFLGD +LG+++ LF F + Sbjct: 21 FVKLQRLIDYQFNDVSLLKQALTHKS---AHRQHNERLEFLGDAVLGMIVGEHLFKAFPN 77 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 + EG+L+ +++V +T +++A E L FI++ + K SI ADVVES+I A Sbjct: 78 SPEGKLTRMRSAIVKGDTLAEIALEKGLGEFIQLGAGELKSGGKQRYSILADVVESIIGA 137 Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD G+ F+ ++ R L +DAKT LQE+ ++ P Y+V G Sbjct: 138 IYLDAGMNQCYDFIHAWFGARIAKLDPDVHPKDAKTRLQEYLQSRGIELPVYEVVDIKGK 197 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 DH+ FTV L+ P Q S++ AEQ+AA L++ Sbjct: 198 DHNQTFTVSCNTVTLSDPIQAQGASRKRAEQIAAQLTLEK 237 >gi|203284601|ref|YP_002222341.1| ribonuclease III [Borrelia duttonii Ly] gi|203288135|ref|YP_002223150.1| ribonuclease III [Borrelia recurrentis A1] gi|201084044|gb|ACH93635.1| ribonuclease III [Borrelia duttonii Ly] gi|201085355|gb|ACH94929.1| ribonuclease III [Borrelia recurrentis A1] Length = 243 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 118/212 (55%), Gaps = 7/212 (3%) Query: 17 FANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F + LL +L+HSS ++ + + Y ERLEFLGD +L L+I+ L+ + EGELS Sbjct: 27 FNDIYLLNMSLSHSSYANEFDQKYANNERLEFLGDSVLNLIITDYLYKFYPDKSEGELSK 86 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + +VS ++ S +AREL+L ++I + + I AD +E+ + ALYLDGG Sbjct: 87 ARSYIVSEDSLSSIARELNLGNYILLGRGEENNDGRNKKGILADAIEAFVGALYLDGGFS 146 Query: 134 VAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 A TFV + ++ + G F +D K+ LQE+ K+ ++P YK+ GPDH+ F Sbjct: 147 KASTFVVELFEVHIRLMFNRGDF-KDYKSLLQEYVQKKYKISPSYKLAKELGPDHNKIFC 205 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + ++ + G SK+ AE +AA LK Sbjct: 206 VELYVNDKFVSNGKGKSKKEAEMIAAEMALKN 237 >gi|213161855|ref|ZP_03347565.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 231 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 6 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 63 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ + P Y V Sbjct: 123 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 182 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL+ P G S+R AEQ AA + LK+ Sbjct: 183 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 227 >gi|152999778|ref|YP_001365459.1| ribonuclease III [Shewanella baltica OS185] gi|189043347|sp|A6WKQ7|RNC_SHEB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|151364396|gb|ABS07396.1| Ribonuclease III [Shewanella baltica OS185] Length = 226 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 83/216 (38%), Positives = 123/216 (56%), Gaps = 6/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + +GY F N LL +ALTH S ++ + E RLEFLGD IL ++IS L++ F A E Sbjct: 10 LCRTLGYEFKNIELLTQALTHRSAANKHNE---RLEFLGDSILSIVISDALYHQFPKATE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV +T + +A+E L ++ + K SI AD VE++I A+YL Sbjct: 67 GDLSRMRATLVRGDTLTIIAQEFKLGDYLYLGPGELKSGGFRRESILADAVEAIIGAVYL 126 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D +EV + K++ +R ++ G ++DAKT LQE P+Y+V G HD Sbjct: 127 DSDLEVCRALLLKWYAERLAEIQPGISQKDAKTLLQEHLQGFKKPLPDYQVINIEGDAHD 186 Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221 FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 187 QTFTVECRIEDLSQSVIGVASSRRKAEQIAAAQVLE 222 >gi|16765901|ref|NP_461516.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140810|ref|NP_804152.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412543|ref|YP_149618.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361478|ref|YP_002141114.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205353677|ref|YP_002227478.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857988|ref|YP_002244639.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|20141650|sp|Q56056|RNC_SALTY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|81360707|sp|Q5PIG5|RNC_SALPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741376|sp|B5QTU8|RNC_SALEP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741377|sp|B5RD49|RNC_SALG2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238689916|sp|B5BAT0|RNC_SALPK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|16421128|gb|AAL21475.1| RNase III, ds RNA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29136435|gb|AAO68001.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126800|gb|AAV76306.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092954|emb|CAR58384.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205273458|emb|CAR38435.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206709791|emb|CAR34143.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247776|emb|CBG25604.1| RNase III [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994707|gb|ACY89592.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159129|emb|CBW18643.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332989508|gb|AEF08491.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 226 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL+ P G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 222 >gi|270156955|ref|ZP_06185612.1| ribonuclease III [Legionella longbeachae D-4968] gi|289164621|ref|YP_003454759.1| ribonuclease III [Legionella longbeachae NSW150] gi|269988980|gb|EEZ95234.1| ribonuclease III [Legionella longbeachae D-4968] gi|288857794|emb|CBJ11638.1| putative ribonuclease III [Legionella longbeachae NSW150] Length = 227 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 80/218 (36%), Positives = 126/218 (57%), Gaps = 8/218 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +R+GY F N + L++ALTH S+ E+YER EFLGD IL +I+ LF+ F E Sbjct: 8 LCRRLGYHFKNSAYLKQALTHCSVG---SENYERFEFLGDSILSFVIANELFHRFPLQSE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS + LV E ++A+E++L F+ + K SI +D +E++ AA++L Sbjct: 65 GQLSRLRSFLVRGEMLVELAKEIELGDFLFLGQGELKSGGFRRASILSDALEAVFAAVFL 124 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 DGGI+ A + K ++ R L+S +DAKT+LQE+ A+ PEY +T G +H Sbjct: 125 DGGIDCAKEVILKLYRIR-LESPNLNDCLKDAKTQLQEYLQAEKIPLPEYILTKIEGDEH 183 Query: 186 DPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKR 222 + F + ++G+ G ++R AEQ+AA +L+R Sbjct: 184 NQIFYITCSVNGMKQQTFGQGSNRRKAEQLAAKAMLER 221 >gi|148981907|ref|ZP_01816565.1| ribonuclease III [Vibrionales bacterium SWAT-3] gi|145960708|gb|EDK26050.1| ribonuclease III [Vibrionales bacterium SWAT-3] Length = 225 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 77/217 (35%), Positives = 118/217 (54%), Gaps = 6/217 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++IGY F + L+ ALTH S + + E RLEFLGD IL +I+ L++ F E Sbjct: 8 LERKIGYQFNDADLIHLALTHRSAAGKHNE---RLEFLGDSILSFVIADDLYHRFPKVNE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++ RE +L ++++ K SI AD VE++I A+YL Sbjct: 65 GDMSRMRATLVRGHTLAELGREFELGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D E + +++ R A++ G ++D KT LQE+ + P Y VT G H+ Sbjct: 125 DSDTETVRGIILSWYQSRLEAIQPGVSQKDPKTRLQEFLQGRRNPLPVYTVTNIKGEAHN 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 FTV E++G+ P G S+R AEQ AA L++ Sbjct: 185 QEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQ 221 >gi|302335832|ref|YP_003801039.1| RNAse III [Olsenella uli DSM 7084] gi|301319672|gb|ADK68159.1| RNAse III [Olsenella uli DSM 7084] Length = 242 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 113/224 (50%), Gaps = 3/224 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 R +E+ +G+ F+++ L+ A+TH S SYERLEFLGD ILG +++T +F Sbjct: 6 RVVAVEQIVGHHFSDQRLITSAITHPSAVEGKPVSASYERLEFLGDSILGAMVATDMFER 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EGEL+ SLVS +T S+VA L + I R M S +V E++ Sbjct: 66 FPGMDEGELTRLKISLVSGKTLSEVAGSLGIGELIVFGESERGTGARGMHSALENVYEAI 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRS 181 + ALYLD G E FV + + R K+ LQE +F PEY++ Sbjct: 126 VGALYLDAGFEATHDFVRRTLSPHMVPELAARPLSPKSRLQEVTQREFRCAPEYRLEGEE 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GP H P FT VV + G +G SK+ +E AA + L R G+ Sbjct: 186 GPAHSPTFTTVVLVDGRRVGRGSGPSKKESESQAALDALDRLGL 229 >gi|237807623|ref|YP_002892063.1| ribonuclease III [Tolumonas auensis DSM 9187] gi|237499884|gb|ACQ92477.1| ribonuclease III [Tolumonas auensis DSM 9187] Length = 223 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 6/221 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + S LE+++GY F N+ LL +A+TH S + E RLEFLGD IL L+I+ +L++ F Sbjct: 4 KLSRLEQKLGYPFQNKDLLVRAITHRSAGSRHNE---RLEFLGDSILSLVIAEVLYHRFP 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG++S +LV +T +++ARE L ++ + K SI AD VE+LI Sbjct: 61 NVSEGDMSRMRATLVREKTLAELAREFALGDYLILGPGELKSGGYRRESILADTVEALIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD ++ T + ++ +R +++ G ++D KT LQE+ + P Y VT G Sbjct: 121 AIYLDSDLDGIRTLMLNWYNERLDSIRPGVEQKDPKTRLQEFLQGRRRPLPTYAVTDVKG 180 Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 H+ +FTV I + A G+ S+R AEQ AA L++ Sbjct: 181 EAHNQQFTVECAIDDIEAAFVGVGSSRRKAEQAAAERALEQ 221 >gi|296535948|ref|ZP_06898097.1| ribonuclease III [Roseomonas cervicalis ATCC 49957] gi|296263721|gb|EFH10197.1| ribonuclease III [Roseomonas cervicalis ATCC 49957] Length = 234 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 74/201 (36%), Positives = 109/201 (54%), Gaps = 4/201 (1%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 R+G+ F ++ LLE+ALTH S ++ ++ S ERLEFLGDR+L L+++ L F + +E Sbjct: 17 RLGHEFRDKGLLEQALTHRSAANPRRDMLDSNERLEFLGDRVLALVMAEWLSERFPAERE 76 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L R + LV+AET ++V + L + +RV + ++ AD E+LI ALYL Sbjct: 77 GALGKRLSVLVAAETLAKVGEAIGLPAMLRVPPAEGRTGLRGRATVIADATEALIGALYL 136 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 D G+EV F+ + W + AK+ LQE + PEY+ +GP H P Sbjct: 137 DAGLEVPRRFIRREWAEFVAADPTPPMSAKSRLQEHTLGRAEGLPEYRQVSVTGPSHQPV 196 Query: 189 FTVVVEISGLAPAQGMDCSKR 209 F V V G A+G SKR Sbjct: 197 FVVAVRAGGRE-AEGQGDSKR 216 >gi|15645286|ref|NP_207456.1| ribonuclease III [Helicobacter pylori 26695] gi|2313785|gb|AAD07725.1| ribonuclease III (rnc) [Helicobacter pylori 26695] Length = 240 Score = 127 bits (320), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 19 YTTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 76 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 77 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 136 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 137 VYLEAGLAKVQKIMQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 194 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 195 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQK 235 >gi|84390104|ref|ZP_00991366.1| ribonuclease III [Vibrio splendidus 12B01] gi|86146359|ref|ZP_01064683.1| ribonuclease III [Vibrio sp. MED222] gi|218710569|ref|YP_002418190.1| ribonuclease III [Vibrio splendidus LGP32] gi|254807909|sp|B7VK79|RNC_VIBSL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|84376758|gb|EAP93633.1| ribonuclease III [Vibrio splendidus 12B01] gi|85835838|gb|EAQ53972.1| ribonuclease III [Vibrio sp. MED222] gi|218323588|emb|CAV19828.1| Ribonuclease III [Vibrio splendidus LGP32] Length = 225 Score = 127 bits (320), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 77/217 (35%), Positives = 119/217 (54%), Gaps = 6/217 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++IGY F + L+ ALTH S + + E RLEFLGD IL +I+ L++ F E Sbjct: 8 LERKIGYQFNDADLIHLALTHRSAAGKHNE---RLEFLGDSILSFVIADDLYHRFPKVNE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++ RE +L ++++ K SI AD VE++I A+YL Sbjct: 65 GDMSRMRATLVRGHTLAELGREFELGDYLKLGPGELKSGGFRRDSILADAVEAIIGAVYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D EV + +++ R +++ G ++D KT LQE+ + P Y VT G H+ Sbjct: 125 DSDTEVVRRIILSWYQSRLESIQPGVSQKDPKTRLQEFLQGRRNPLPVYTVTNIKGEAHN 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 FTV E++G+ P G S+R AEQ AA L++ Sbjct: 185 QEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQ 221 >gi|7531276|sp|P56118|RNC_HELPY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 239 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YTTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 136 VYLEAGLAKVQKIMQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 194 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQK 234 >gi|146296620|ref|YP_001180391.1| ribonuclease III [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410196|gb|ABP67200.1| RNAse III [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 224 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 7/223 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +EK++GY F N +LL+ ALTH S +H + YERLEFLGD +L L++S LF HF Sbjct: 2 TDIEKKLGYRFKNPNLLKLALTHKSATHDDKSCYERLEFLGDAVLELVVSKYLFEHFPQL 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ ++V +ET S+VA L+L +I + +K+ SI +DV+E++ + Sbjct: 62 SEGELTNLRATIVCSETLSKVAETLNLKRYIVFGKNEKKEGFEGNKSIWSDVLEAIFGGI 121 Query: 127 YLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +L+ G ++A V + + K+ A GK D KT+LQE+ + V +Y + + + Sbjct: 122 FLESGFDMAEKIVINLLEPFIKKAA--EGKLFYDYKTKLQEFIQREKNVKIKY-IDYENF 178 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 D+ RF + I ++G SK+ A+Q AA LK+ G+ Sbjct: 179 EDNLSRFKSELYIGKNKISEGYGNSKKEAQQEAALNALKKLGV 221 >gi|283953747|ref|ZP_06371278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414] gi|283794788|gb|EFC33526.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414] Length = 224 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 125/220 (56%), Gaps = 8/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ + Y F +++LL ALTH S SY ERLEFLGD +L L++ LF+ F E Sbjct: 7 LEQNLTYEFKDKNLLMHALTHKSFKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV+ ++ +++A L+L FI +S + +SI +D +E++I A++L Sbjct: 65 GDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKSSILSDALEAIIGAIHL 124 Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G E A T ++K + Q + + +D KT+LQE K G TP+Y+ GPD Sbjct: 125 EAGFEFAKTIALRLIEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 182 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 183 HLKQFEIALMLDGKEIARAIAGSKKEAQQMAAKIALEKLG 222 >gi|46201860|ref|ZP_00208277.1| COG0571: dsRNA-specific ribonuclease [Magnetospirillum magnetotacticum MS-1] Length = 230 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 79/205 (38%), Positives = 111/205 (54%), Gaps = 4/205 (1%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+AFA LL +ALTH S + + YERLEFLGDR+LGL+++ +LF F E Sbjct: 12 LGHAFARPELLSQALTHPSTQQHRRSQGSDPYERLEFLGDRVLGLVVAEMLFLRFPDEAE 71 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ R +LV E +++A E+ L + ++ I AD E++I ALY Sbjct: 72 GALARRHAALVRREAVARIANEIGLGRHLVLAKGESDAGGRTNPGILADACEAVIGALYA 131 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 D G VA FV W+ ++ +DAKT LQEWA + P YK+ + GP H+P Sbjct: 132 DAGFAVAAAFVRSRWEPMMEEALAPPKDAKTGLQEWAQGRGKPLPAYKMLGQEGPPHEPT 191 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQ 213 F + V + G+ A G SKR AEQ Sbjct: 192 FLMEVSVEGVGSAVGRGASKRVAEQ 216 >gi|262196731|ref|YP_003267940.1| ribonuclease III [Haliangium ochraceum DSM 14365] gi|262080078|gb|ACY16047.1| ribonuclease III [Haliangium ochraceum DSM 14365] Length = 282 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 120/219 (54%), Gaps = 10/219 (4%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLL 59 A+ S LE +G+ F R+LLE A+TH S ++ ERLEFLGD +L L + +L Sbjct: 42 AIDLSGLEDILGHRFRKRALLEAAVTHRSFANEQAVPCTDNERLEFLGDAVLDLAVGHML 101 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG LSV +VS + S++A L L +++R+ R+ SI AD + Sbjct: 102 MDVHPDLSEGRLSVTRAQIVSEKGLSEIAYGLGLGTYLRLGKGERRSGGQNKASILADSL 161 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK----SGKFRRDAKTELQEWAHAKFGVTPEY 175 E++IAA+YLDGG + A V + + R L+ SG + D KT LQE A A+ TP Y Sbjct: 162 EAVIAAVYLDGGFDAAWKLVARLFA-RTLEEVEISGFY--DHKTRLQELAQARLKSTPAY 218 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 +V +GPDH F VV EI G + + SK+ AEQ+ Sbjct: 219 RVVDETGPDHAKLFEVVAEIDGREWGRAIGSSKKRAEQM 257 >gi|224418414|ref|ZP_03656420.1| ribonuclease III [Helicobacter canadensis MIT 98-5491] gi|253827732|ref|ZP_04870617.1| ribonuclease III [Helicobacter canadensis MIT 98-5491] gi|313141944|ref|ZP_07804137.1| ribonuclease III [Helicobacter canadensis MIT 98-5491] gi|253511138|gb|EES89797.1| ribonuclease III [Helicobacter canadensis MIT 98-5491] gi|313130975|gb|EFR48592.1| ribonuclease III [Helicobacter canadensis MIT 98-5491] Length = 224 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 120/217 (55%), Gaps = 8/217 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 ++ +GY F+N++LL++ALTH S S ERLEFLGD +L L+I L+ F + E Sbjct: 6 FQQYLGYHFSNQNLLQEALTHKSAKKSTHN--ERLEFLGDAVLDLIIGEFLYKKFPHSPE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS S+V+ + +++AR L++ ++ +S ++ SI ++ E+++ A+YL Sbjct: 64 GELSKMRASMVNEKAFAKIARYLNIGEYLYISHSEEQNNGREKDSILSNAFEAIVGAIYL 123 Query: 129 DGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G+E T V D + + L++ D KT LQE A FG+TPEY V GPD Sbjct: 124 ESGLEKVQTIVLKILDILYPKIDLEN--LFYDYKTSLQELTQALFGITPEYVVLDSKGPD 181 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H+ F + V I AQ SK+ A+Q A LK Sbjct: 182 HNKEFLMGVFIQNKEYAQAKGKSKKEAQQNCAKIALK 218 >gi|39997326|ref|NP_953277.1| ribonuclease III [Geobacter sulfurreducens PCA] gi|81701827|sp|Q74AX1|RNC_GEOSL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|39984217|gb|AAR35604.1| ribonuclease III [Geobacter sulfurreducens PCA] gi|298506263|gb|ADI84986.1| ribonuclease III [Geobacter sulfurreducens KN400] Length = 248 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 121/220 (55%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE IGY F +R L++ALTH S + ERLEF GD ILG I +L H+ Sbjct: 19 LETSIGYRFTDRRFLDEALTHRSWLNEVRSPTVPDNERLEFFGDAILGFCIGKMLLRHYP 78 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 ++EG L+ ++LV ET + +A ++L S++R+ + S+ A+ +E+L+A Sbjct: 79 ESREGALARMKSALVGEETLADLAAAVELGSYLRLGRGEERSGGRHRRSLLANALEALLA 138 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLDGG+ VD ++ R + +G RD KT+ QE A A++G P Y + SG Sbjct: 139 AMYLDGGMAPVERLVDAWFGPRLAGVAAGIKGRDFKTDFQELAQAQYGGLPRYVLVDTSG 198 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P HD RFTV + QG SK+ AEQ AA + L+R Sbjct: 199 PAHDLRFTVAAYVGERLLGQGTGRSKKEAEQAAARQCLER 238 >gi|167549387|ref|ZP_02343146.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992712|ref|ZP_02573808.1| ribonuclease III [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232159|ref|ZP_02657217.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238326|ref|ZP_02663384.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168245106|ref|ZP_02670038.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261368|ref|ZP_02683341.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466658|ref|ZP_02700512.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821429|ref|ZP_02833429.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443007|ref|YP_002041844.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450415|ref|YP_002046643.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472117|ref|ZP_03078101.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194733998|ref|YP_002115644.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247832|ref|YP_002147539.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262390|ref|ZP_03162464.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198245284|ref|YP_002216648.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387478|ref|ZP_03214090.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929592|ref|ZP_03220666.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213425276|ref|ZP_03358026.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213585348|ref|ZP_03367174.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213613049|ref|ZP_03370875.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646353|ref|ZP_03376406.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213859103|ref|ZP_03385074.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238912699|ref|ZP_04656536.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825501|ref|ZP_06544708.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|194401670|gb|ACF61892.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408719|gb|ACF68938.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458481|gb|EDX47320.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709500|gb|ACF88721.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630694|gb|EDX49286.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211535|gb|ACH48932.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240645|gb|EDY23265.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288832|gb|EDY28205.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939800|gb|ACH77133.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604576|gb|EDZ03121.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321311|gb|EDZ06511.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205325334|gb|EDZ13173.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329152|gb|EDZ15916.1| ribonuclease III [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333647|gb|EDZ20411.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336135|gb|EDZ22899.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341915|gb|EDZ28679.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349444|gb|EDZ36075.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|312913570|dbj|BAJ37544.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087082|emb|CBY96851.1| RNase III, ds RNA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222714|gb|EFX47785.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613351|gb|EFY10293.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620445|gb|EFY17310.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625087|gb|EFY21916.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629469|gb|EFY26245.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633856|gb|EFY30595.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635462|gb|EFY32173.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639862|gb|EFY36541.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644252|gb|EFY40796.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649944|gb|EFY46364.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654873|gb|EFY51190.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658199|gb|EFY54465.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661729|gb|EFY57947.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669710|gb|EFY65856.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673283|gb|EFY69388.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674928|gb|EFY71015.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682951|gb|EFY78969.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685612|gb|EFY81607.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323130912|gb|ADX18342.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323191960|gb|EFZ77198.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200407|gb|EFZ85488.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201307|gb|EFZ86374.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208377|gb|EFZ93317.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211547|gb|EFZ96385.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215979|gb|EGA00711.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221760|gb|EGA06168.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225632|gb|EGA09859.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229350|gb|EGA13474.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235335|gb|EGA19419.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237479|gb|EGA21542.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245234|gb|EGA29235.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248808|gb|EGA32735.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254012|gb|EGA37833.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259060|gb|EGA42708.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261983|gb|EGA45548.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267766|gb|EGA51247.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269675|gb|EGA53127.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624403|gb|EGE30748.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628781|gb|EGE35124.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 245 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 20 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 77 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ + P Y V Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL+ P G S+R AEQ AA + LK+ Sbjct: 197 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 241 >gi|291550077|emb|CBL26339.1| RNAse III [Ruminococcus torques L2-14] Length = 228 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 116/220 (52%), Gaps = 5/220 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 R LE++IGY F ++SL+E+AL HSS ++ E ERLEFLGD +L L+ S LF Sbjct: 3 RVKELEQKIGYVFKDKSLIERALMHSSYTNEKHLKKYECNERLEFLGDAVLELVSSAYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N F EGEL+ S+V + + AR++ L ++ + SI +D +E Sbjct: 63 NEFPKVSEGELTKTRASMVCEPSLAMCARDIGLGDYLLLGKGEEATGGRKRDSITSDAME 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI A+YLDGG A F+ ++ L+ K D+KT LQE A Y++ Sbjct: 123 ALIGAIYLDGGFTNAKEFI-HHFILTDLEDKKLFYDSKTILQEIVQANMTGNVSYELIDE 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDH+ F V I A +G SK++AEQ AA E + Sbjct: 182 QGPDHNKIFEVEARIGRKAWGRGKGSSKKSAEQQAAYEAI 221 >gi|225025907|ref|ZP_03715099.1| hypothetical protein EUBHAL_00143 [Eubacterium hallii DSM 3353] gi|224956693|gb|EEG37902.1| hypothetical protein EUBHAL_00143 [Eubacterium hallii DSM 3353] Length = 232 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 120/220 (54%), Gaps = 5/220 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60 R+ LE++IGY F N+ L A+THSS ++ + + ERLEFLGD +L + IS +F Sbjct: 6 RFKGLEEKIGYTFTNKRTLALAMTHSSYANEQRGRRKANNERLEFLGDAVLEVTISDYVF 65 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG L+ +SLV T + AR+++L ++ +S SI +D E Sbjct: 66 REYPGYNEGRLTKLRSSLVCEYTLAICARDVELGKYLLLSRGEDATGGRERDSILSDAFE 125 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI A+YLDGG++ A TF+ + + F DAKT LQE A EY +T Sbjct: 126 ALIGAIYLDGGMDRARTFIHTHLLKDVEDKSLFY-DAKTILQEMVQAGPDPRLEYVLTRE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +GPDH+ FTV +I G A G +K+ AEQ+AA + + Sbjct: 185 AGPDHNKEFTVEAKIGGKTYAIGKGKTKKGAEQIAAYQTI 224 >gi|310658889|ref|YP_003936610.1| ribonuclease 3 [Clostridium sticklandii DSM 519] gi|308825667|emb|CBH21705.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Clostridium sticklandii] Length = 229 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 121/222 (54%), Gaps = 8/222 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L+K+I Y F + LL++ALTHSS S+ Y++ + ERLEFLGD ILGL+IS LF Sbjct: 8 LQKKINYEFQDLKLLKEALTHSSYSNEYKKIKNRNNERLEFLGDSILGLIISNYLFRLKK 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ ++V + +A+ + L ++ + SI AD E+LIA Sbjct: 68 ELPEGELTKIRAAIVCERSLKDIAKSIHLGEYLYLGKGEESTGGRTRDSILADATEALIA 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLDGG A FV ++ +A++ GK RD KT+LQE YK+ + Sbjct: 128 AIYLDGGFRKATDFVLEHMGDIISQAIQ-GKIMRDYKTQLQELIQKDNKENIIYKLVDQL 186 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F + V + G+ SK+ AEQ AA + +++E Sbjct: 187 GPDHDKTFKMNVFLGEKLIGTGIGKSKKEAEQEAAKDAMEKE 228 >gi|16761493|ref|NP_457110.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|22654063|sp|Q8Z4K4|RNC_SALTI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|25289227|pir||AC0829 ribonuclease III (EC 3.1.26.3) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503793|emb|CAD02783.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi] Length = 226 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 123/225 (54%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ P Y V Sbjct: 118 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGHHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL+ P G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 222 >gi|317180453|dbj|BAJ58239.1| ribonuclease III [Helicobacter pylori F32] Length = 238 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 17 YATLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 74 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 75 YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 134 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 135 VYLEAGLAKVRKITQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 192 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 193 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 233 >gi|283786183|ref|YP_003366048.1| Ribonuclease III [Citrobacter rodentium ICC168] gi|282949637|emb|CBG89256.1| Ribonuclease III [Citrobacter rodentium ICC168] Length = 226 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFTHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGYRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL+ P G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 222 >gi|317181975|dbj|BAJ59759.1| ribonuclease III [Helicobacter pylori F57] Length = 238 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 17 YATLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 74 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 75 YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 134 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 135 VYLEAGLAKVRKITQNLLNRTYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 192 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 193 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 233 >gi|71083743|ref|YP_266463.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1062] gi|91763221|ref|ZP_01265185.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1002] gi|90101634|sp|Q4FLS9|RNC_PELUB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71062856|gb|AAZ21859.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1062] gi|91717634|gb|EAS84285.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1002] Length = 222 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 114/205 (55%), Gaps = 3/205 (1%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F+++ + K+LTH S + E++EFLGDR+LGL+I+ L + KEG L +F Sbjct: 16 FSDQKIFIKSLTHKSFDSI--NNNEKIEFLGDRVLGLIIAKKLLELYPDEKEGVLDKKFA 73 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 SLV+ + C ++A++++L +I V + K + I AD +E+LI A+YLD G+ Sbjct: 74 SLVNKKKCLEIAKKIELEKYILVLNPKNKKI-EIEDKIVADCLEALIGAIYLDKGLNFTE 132 Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 F+ W + S + DAKT+LQE++ F V P YK+ +GP H P F V V++ Sbjct: 133 RFILNLWSEHITASVITQIDAKTKLQEYSLKIFKVLPIYKLISNTGPRHKPLFKVAVKLK 192 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLK 221 SK+ AEQ AA+ L+ Sbjct: 193 NTKFFTAEGTSKKDAEQNAASLCLQ 217 >gi|86152331|ref|ZP_01070542.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94] gi|315125039|ref|YP_004067043.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840820|gb|EAQ58071.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94] gi|315018761|gb|ADT66854.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 224 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 125/220 (56%), Gaps = 8/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ + Y F +++LL ALTH S SY ERLEFLGD +L L++ LF+ F E Sbjct: 7 LERSLTYEFKDKNLLIHALTHKSFKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV+ ++ +++A L+L FI +S + + SI +D +E++I A++L Sbjct: 65 GDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEKNNGGKEKPSILSDALEAIIGAIHL 124 Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G E A T ++K + Q + + +D KT+LQE K G TP+Y+ GPD Sbjct: 125 EAGFEFAKTIALRLIEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 182 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 183 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222 >gi|207092393|ref|ZP_03240180.1| ribonuclease III [Helicobacter pylori HPKX_438_AG0C1] Length = 239 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YTTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA+ +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 136 VYLEAGLAKVRKIMQNLLNRAYKRLDLEH--LSVDYKTALQELTQAQFCVIPTYQLLKEK 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A L++ Sbjct: 194 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQK 234 >gi|297717874|gb|ADI50080.1| ribonuclease III [Candidatus Odyssella thessalonicensis L13] Length = 211 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 125/211 (59%), Gaps = 7/211 (3%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 ++ + F + SL +KA+TH S +ERLEFLGDR+LG++++ +L+ F KEG+L Sbjct: 2 KLKFTFKDPSLFDKAITHPSFRRRKVNDFERLEFLGDRVLGIIVAEMLYKAFPLEKEGDL 61 Query: 72 SVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 + R L+S + C ++A E++L I+ V + L + +++ +D +E+LI A++LD Sbjct: 62 AKRQAVLISRDVCQEIAYEIELHEDIKVVGTGLDGN-----SAVLSDAMEALIGAMFLDQ 116 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 G+EV + W++R + +D K+ LQEW ++ P Y++ ++GP H P F Sbjct: 117 GLEVTRQHILPLWEKRLAITQAPPKDHKSLLQEWTQSRGLGIPAYELVNQTGPAHAPEFE 176 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +++++ + + S++ AEQ AA ++L+ Sbjct: 177 ILLKVDDHS-VKARGKSRKLAEQEAAKQMLQ 206 >gi|21672530|ref|NP_660597.1| ribonuclease III [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009123|sp|Q8K9R1|RNC_BUCAP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|21623153|gb|AAM67808.1| ribonuclease III [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 226 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 127/228 (55%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + +++ +GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNHIVANKIQQILGYTFTHQELLKQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 HF EG++S +LV T +++A E DL ++++ K SI A+ VE Sbjct: 58 QHFPYIDEGDMSRMRATLVRGNTLAEIAYEFDLGEYLQLGQGELKSGGFRRESILANTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++YLD I+ + K++++R + G ++D KT LQE+ +K P Y + Sbjct: 118 ALIGSIYLDSNIKTVEELILKWYEKRLEKISPGDTQKDPKTRLQEYLQSKHLSLPSYFIV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225 G H+ FT+ E+S L+ + G S+R AEQ AA + L + G+ Sbjct: 178 EVYGEAHNQLFTIHCEVSTLSTSFIGKGTSRRKAEQDAARKALIKLGV 225 >gi|262273710|ref|ZP_06051523.1| ribonuclease III [Grimontia hollisae CIP 101886] gi|262222125|gb|EEY73437.1| ribonuclease III [Grimontia hollisae CIP 101886] Length = 224 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 114/204 (55%), Gaps = 6/204 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++RIGY F + +LL ALTH S S ++ E RLEFLGD IL +++ L++ F + E Sbjct: 8 LQRRIGYTFNDTTLLSLALTHRSASGNHNE---RLEFLGDSILSFVVADDLYHRFPNVDE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++ RE +L +++ K SI AD VE++I A+YL Sbjct: 65 GDMSRMRATLVRGNTLAELGREFELGDVLQLGPGELKSGGFRRDSILADAVEAIIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D +E V ++KQR ++ G ++D KT LQE+ + P Y VT G H+ Sbjct: 125 DSSLETVRGIVLNWYKQRLETIQPGANQKDPKTRLQEFLQGRRKPLPAYNVTKVQGEAHN 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKR 209 +FTV E++GL P G S+R Sbjct: 185 QQFTVECEVAGLDRPVVGKGSSRR 208 >gi|169342696|ref|ZP_02863737.1| ribonuclease III [Clostridium perfringens C str. JGS1495] gi|169299202|gb|EDS81272.1| ribonuclease III [Clostridium perfringens C str. JGS1495] Length = 237 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 125/229 (54%), Gaps = 6/229 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTL 58 M + +EK IG F N+ +L ALTHSS ++ +++ ERLEFLGD +L L ++ Sbjct: 1 MKDINLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKY 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAE-TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LFN++ EGEL+ + +LV E + +V++ L L +IR+S TSIQAD Sbjct: 61 LFNNYKDKSEGELT-KIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQAD 119 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY 175 +E++IAA+YLD GIEVA F+ + +K K + + D KT LQE V Y Sbjct: 120 ALEAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + GP H +F + I+ QG+ SK+ +EQ AA L+R G Sbjct: 180 NLVKHEGPPHRRKFFTDLLINNEVMGQGVGFSKKESEQNAAKAALQRLG 228 >gi|94676727|ref|YP_588731.1| ribonuclease III [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219877|gb|ABF14036.1| ribonuclease III [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 225 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/218 (38%), Positives = 124/218 (56%), Gaps = 6/218 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L+K+IGY F N++LL +ALTH S S+ + E RLEFLGD IL +I+ L+ F Sbjct: 6 NNLQKKIGYYFQNQNLLLQALTHRSASNKHNE---RLEFLGDSILSYVIAHALYQRFQYI 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++AREL+L++ +R+ K SI AD VE+LI ++ Sbjct: 63 NEGDMSRMRATLVRGNTLAEIARELNLSTCLRLGIGELKSGGLSRDSILADAVEALIGSI 122 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LD I F+ ++ R K G+ ++D KT LQE+ + P Y + SG Sbjct: 123 FLDSNIFTVEKFILNLYRSRLNKIIPGERQKDPKTRLQEYLQGQHMPLPIYIIVQISGET 182 Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 HD RF + +++ LA P G S+R AEQ AA + LK Sbjct: 183 HDQRFIIHCQVNNLANPIIGHGSSRRQAEQAAAQQALK 220 >gi|289423974|ref|ZP_06425766.1| ribonuclease III [Peptostreptococcus anaerobius 653-L] gi|289155610|gb|EFD04283.1| ribonuclease III [Peptostreptococcus anaerobius 653-L] Length = 236 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 126/224 (56%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNH 62 + S+ EK+IGY F ++ ++ ALTHSS ++ ++E ERLEFLGD +LGL++S LF+ Sbjct: 11 KISSFEKKIGYIFNDKENIQVALTHSSFANEHKEYKYNERLEFLGDSVLGLVVSDYLFSV 70 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+L+ ++V E+ S VAR+L+L ++ + + R+ S SI AD E++ Sbjct: 71 RTDLPEGQLTKFRANVVCEESLSVVARKLNLGEYLLLGNGERQSGGSDRDSILADATEAV 130 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 IAA+Y+DGG + A F+ + K+ G RD KT LQE +K G Y++ Sbjct: 131 IAAIYIDGGFDKAKEFIMYNLRDVIAKTIDGNIFRDYKTILQEVIQSKNGRIS-YRLVQE 189 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDHD F + V G+ +K+ AE+ AA L+ G Sbjct: 190 KGPDHDKVFEMEVRSGNKVLGFGVGKNKKDAEKEAAKNALENMG 233 >gi|257440564|ref|ZP_05616319.1| ribonuclease III [Faecalibacterium prausnitzii A2-165] gi|257196887|gb|EEU95171.1| ribonuclease III [Faecalibacterium prausnitzii A2-165] Length = 224 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 120/221 (54%), Gaps = 9/221 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 LE IGY F N LLE ALTH+S ++ + + ERLEFLGD +L ++ + LF+ + Sbjct: 5 LETIIGYKFKNPKLLETALTHTSYANESRTPVQHNERLEFLGDSVLQIVSADYLFHAYAD 64 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ +SLVS Q A+E++L ++R+ + S+ +D E++IAA Sbjct: 65 RPEGDLTRIRSSLVSEGALFQFAQEINLGEYLRLGRGEERCGGRTRPSVVSDAFEAVIAA 124 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LYLDGG+EVA +F+ + + GK D KT LQE Y V SGPD Sbjct: 125 LYLDGGMEVAKSFILPF-----ITEGKHAEADYKTRLQEIVQQNPEERLSYVVEQESGPD 179 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 HD F V V + A+G SK+ AEQ AA E LK G+ Sbjct: 180 HDKHFVVAVRFNSDKVARGEGRSKKMAEQHAAREALKLLGV 220 >gi|308063545|gb|ADO05432.1| ribonuclease III [Helicobacter pylori Sat464] Length = 238 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 17 YATLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 74 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 75 YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 134 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 135 VYLEAGLAKVQKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 192 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 193 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 233 >gi|291278588|ref|YP_003495423.1| ribonuclease III [Deferribacter desulfuricans SSM1] gi|290753290|dbj|BAI79667.1| ribonuclease III [Deferribacter desulfuricans SSM1] Length = 231 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 127/225 (56%), Gaps = 22/225 (9%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+ IGY F N+SLL +ALTHSS ++ + +YERLEFLGD +L L+++ L + Sbjct: 7 LEELIGYRFKNKSLLLEALTHSSYAYEKKLKRNYERLEFLGDSVLQLIVTEYLVIKYKEF 66 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS---FMTSIQADVVESLI 123 KEG LS + VS + S++A ++ L F+ + + ++ S SI AD+ ESL+ Sbjct: 67 KEGVLSKYRSFFVSEDIISEIALKIRLNDFLMLG---KGEIVSGGYTKPSILADIFESLL 123 Query: 124 AALYLDGG--------IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 A+YLDGG + + +D+Y ++ + D KTELQ+ KFG PEY Sbjct: 124 GAVYLDGGYNEARRIVLMLMSELMDEYIEKGII------IDPKTELQKITQQKFGYIPEY 177 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 KV GP+HD FTV ++++ G+ +K+ AE AA++ L Sbjct: 178 KVLKEEGPEHDKVFTVELKLADGNKFIGVGRNKKKAEIDAASKAL 222 >gi|217033708|ref|ZP_03439135.1| hypothetical protein HP9810_5g50 [Helicobacter pylori 98-10] gi|216943897|gb|EEC23334.1| hypothetical protein HP9810_5g50 [Helicobacter pylori 98-10] Length = 238 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 17 YTTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 74 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 75 YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 134 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 135 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 192 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 193 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 233 >gi|87118656|ref|ZP_01074555.1| ribonuclease III [Marinomonas sp. MED121] gi|86166290|gb|EAQ67556.1| ribonuclease III [Marinomonas sp. MED121] Length = 217 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/212 (39%), Positives = 118/212 (55%), Gaps = 8/212 (3%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +GY FA+ LLE ALTH S ++ ERLEFLGD IL +I+ LF+ F AKEGELS Sbjct: 1 MGYFFADLGLLELALTHRSFG---GKNNERLEFLGDSILNYVIAEDLFHRFPKAKEGELS 57 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 SLV ET +++ARE L ++++ + K SI D VE +I A++LD G+ Sbjct: 58 RLRASLVKGETLAEIAREFKLGDYLKLGAGELKSGGFRRDSILEDAVEGIIGAIFLDAGM 117 Query: 133 EVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 + + +++ R L + + +DAKT LQE+ A+ P+Y+VT G HD F Sbjct: 118 DTCSERILSWYESR-LNATSLKIVTKDAKTRLQEFLQARKHALPQYEVTEVLGEPHDQTF 176 Query: 190 TVVVEISGLA-PAQGMDCSKRAAEQVAAAEVL 220 V I A P +G S+R AEQ AA + L Sbjct: 177 YVHCVIELFADPIEGKGNSRRIAEQKAATQAL 208 >gi|261838098|gb|ACX97864.1| ribonuclease III [Helicobacter pylori 51] Length = 239 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YATLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 194 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 234 >gi|308061992|gb|ADO03880.1| ribonuclease III [Helicobacter pylori Cuz20] Length = 239 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YATLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 194 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 234 >gi|24372926|ref|NP_716968.1| ribonuclease III [Shewanella oneidensis MR-1] gi|81462673|sp|Q8EH81|RNC_SHEON RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|24347062|gb|AAN54413.1|AE015579_2 ribonuclease III [Shewanella oneidensis MR-1] Length = 226 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/216 (37%), Positives = 122/216 (56%), Gaps = 6/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + +GY F N LL +ALTH S ++ + E RLEFLGD IL ++IS L++ F A E Sbjct: 10 LCRTLGYEFKNLDLLTQALTHRSAANKHNE---RLEFLGDSILSIVISDALYHQFPKATE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV +T + +A+ L ++ + K SI AD VE++I A+YL Sbjct: 67 GDLSRMRATLVRGDTLTLIAQAFKLGDYLFLGPGELKSGGFRRESILADAVEAIIGAIYL 126 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D +EV + ++ +R ++ G ++DAKT LQE+ P+Y+V G HD Sbjct: 127 DSDLEVCRQLLLNWYAERLAEIQPGINQKDAKTLLQEYLQGLKKPLPDYQVINIEGDAHD 186 Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221 FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 187 QTFTVECRIDDLSQSVIGVASSRRKAEQIAAAQVLE 222 >gi|114048421|ref|YP_738971.1| ribonuclease III [Shewanella sp. MR-7] gi|122944480|sp|Q0HSJ1|RNC_SHESR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|113889863|gb|ABI43914.1| RNAse III [Shewanella sp. MR-7] Length = 226 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/216 (37%), Positives = 122/216 (56%), Gaps = 6/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + +GY F N LL +ALTH S ++ + E RLEFLGD IL ++IS L++ F A E Sbjct: 10 LCRTLGYEFKNLELLTQALTHRSAANKHNE---RLEFLGDSILSIVISDALYHQFPKATE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV +T + +A+ L ++ + K SI AD VE++I A+YL Sbjct: 67 GDLSRMRATLVRGDTLTLIAKAFKLGDYLFLGPGELKSGGFRRESILADAVEAIIGAIYL 126 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D +EV + ++ +R ++ G ++DAKT LQE+ P+Y+V G HD Sbjct: 127 DSDLEVCRKLLLHWYAERLAEIQPGVNQKDAKTLLQEYLQGLKKPLPDYQVINIEGDAHD 186 Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221 FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 187 QTFTVECRIDDLSESVIGVASSRRKAEQIAAAQVLE 222 >gi|117921465|ref|YP_870657.1| ribonuclease III [Shewanella sp. ANA-3] gi|189043353|sp|A0KZN2|RNC_SHESA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|117613797|gb|ABK49251.1| RNAse III [Shewanella sp. ANA-3] Length = 226 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/216 (37%), Positives = 122/216 (56%), Gaps = 6/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + +GY F N LL +ALTH S ++ + E RLEFLGD IL ++IS L++ F A E Sbjct: 10 LCRTLGYEFKNIDLLTQALTHRSAANKHNE---RLEFLGDSILSIVISDALYHQFPKATE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV +T + +A+ L ++ + K SI AD VE++I A+YL Sbjct: 67 GDLSRMRATLVRGDTLTLIAKAFKLGDYLFLGPGELKSGGFRRESILADAVEAIIGAIYL 126 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D +EV + ++ +R ++ G ++DAKT LQE+ P+Y+V G HD Sbjct: 127 DSDLEVCRKLLLHWYAERLAEIQPGVNQKDAKTLLQEYLQGLKKPLPDYQVINIEGDAHD 186 Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221 FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 187 QTFTVECRIDDLSESVIGVASSRRKAEQIAAAQVLE 222 >gi|329297705|ref|ZP_08255041.1| ribonuclease III [Plautia stali symbiont] Length = 226 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 126/228 (55%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPILINKLQRKLGYTFTHPELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ S K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFELGECLRLGSGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSNIQTVEKLILDWYQNRLEQISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225 G HD FT+ ++SG+A P G+ S+R AEQ AA + L + G+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRKAEQAAAEQALIKLGL 225 >gi|182417248|ref|ZP_02948601.1| ribonuclease III [Clostridium butyricum 5521] gi|237669155|ref|ZP_04529139.1| ribonuclease III [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378894|gb|EDT76407.1| ribonuclease III [Clostridium butyricum 5521] gi|237657503|gb|EEP55059.1| ribonuclease III [Clostridium butyricum E4 str. BoNT E BL5262] Length = 232 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 4/226 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M+ +E+ +G F N +LL+ ALTHSS ++ ++ E ERLEFLGD +L L I+ Sbjct: 1 MNKYTLKEIEENLGVCFNNPTLLKTALTHSSFANQFKDAEYNERLEFLGDAVLQLCITEY 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LFN+F S EGEL+ + +V + ++A++L L +IR+S SIQAD Sbjct: 61 LFNNFKSKSEGELTKTRSLIVCENSLYEIAKKLHLGEYIRMSKGEELTGGRERISIQADA 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYK 176 VE++IAA+YLD GI F+ ++++ K + + D KT+LQE+ V+ Y+ Sbjct: 121 VEAVIAAVYLDKGIGFVRDFILLHFEEIIKKAINNEIILDFKTKLQEFLQKDGEVSIHYE 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + GP H +F V I +G SK+ AEQ AA + L + Sbjct: 181 LIKHEGPPHRRKFFTNVVIENNIMGEGCGYSKKEAEQNAAKQALMK 226 >gi|149173983|ref|ZP_01852611.1| ribonuclease III [Planctomyces maris DSM 8797] gi|148846963|gb|EDL61298.1| ribonuclease III [Planctomyces maris DSM 8797] Length = 247 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/216 (37%), Positives = 122/216 (56%), Gaps = 7/216 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 ++ +GY F + LL+ LTH+S + + +S ERLEFLGD ILG ++ LF+ F +A EG Sbjct: 18 QQNLGYRFVDCELLKSCLTHTSAAKTRMDSNERLEFLGDAILGSIVCEKLFDQFPNAPEG 77 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 EL+ +++VS TC+++ARE L FI V L + S+ A + E+LIA +YLD Sbjct: 78 ELTRIKSAVVSRNTCTRLAREKGLDRFIFVGKGLAM-TENLPESLLAGMFEALIAGIYLD 136 Query: 130 GGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GGI F+D ++ K+ + + K+ LQ+++ KF TP Y+V GPDH Sbjct: 137 GGIAPVHQFLDPLIERENSKASRSVHGYNYKSLLQQYSQKKFSQTPIYEVLDEKGPDHSK 196 Query: 188 RF--TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F T ++ PA G +K+ AEQ AA L+ Sbjct: 197 FFKVTAIIGEHKYEPAWG--STKKEAEQRAAYNALR 230 >gi|18310700|ref|NP_562634.1| ribonuclease III [Clostridium perfringens str. 13] gi|168210649|ref|ZP_02636274.1| ribonuclease III [Clostridium perfringens B str. ATCC 3626] gi|168214195|ref|ZP_02639820.1| ribonuclease III [Clostridium perfringens CPE str. F4969] gi|168217005|ref|ZP_02642630.1| ribonuclease III [Clostridium perfringens NCTC 8239] gi|182625857|ref|ZP_02953623.1| ribonuclease III [Clostridium perfringens D str. JGS1721] gi|22654058|sp|Q8XJN8|RNC_CLOPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|18145381|dbj|BAB81424.1| ribonuclease III [Clostridium perfringens str. 13] gi|170711273|gb|EDT23455.1| ribonuclease III [Clostridium perfringens B str. ATCC 3626] gi|170714262|gb|EDT26444.1| ribonuclease III [Clostridium perfringens CPE str. F4969] gi|177908891|gb|EDT71383.1| ribonuclease III [Clostridium perfringens D str. JGS1721] gi|182380899|gb|EDT78378.1| ribonuclease III [Clostridium perfringens NCTC 8239] Length = 237 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 125/229 (54%), Gaps = 6/229 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTL 58 M + +EK IG F N+ +L ALTHSS ++ +++ ERLEFLGD +L L ++ Sbjct: 1 MKDINLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKY 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAE-TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LFN++ EGEL+ + +LV E + +V++ L L +IR+S TSIQAD Sbjct: 61 LFNNYKDKSEGELT-KIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQAD 119 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY 175 +E++IAA+YLD GIEVA F+ + +K K + + D KT LQE V Y Sbjct: 120 ALEAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + GP H +F + I+ QG+ SK+ +EQ AA L+R G Sbjct: 180 NLVKHEGPPHRRKFFTDLLINNEIMGQGVGFSKKESEQNAAKAALQRLG 228 >gi|88858204|ref|ZP_01132846.1| RNase III, dsRNA [Pseudoalteromonas tunicata D2] gi|88819821|gb|EAR29634.1| RNase III, dsRNA [Pseudoalteromonas tunicata D2] Length = 225 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 118/217 (54%), Gaps = 5/217 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L +IGY F N +LLE+A+TH S H Q + ERLEFLGD IL +I+ L+ F + Sbjct: 6 TDLYTKIGYTFNNVALLEQAMTHRS--HKGQHN-ERLEFLGDSILSFVIANELYKRFPKS 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS ++LV +T ++ E +L ++R+ K S AD VE++I A+ Sbjct: 63 REGDLSRMRSTLVRGQTLAEFGLEFNLGDYLRLGPGELKSGGYRRESTLADAVEAIIGAV 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LD GI+ + ++K R + G ++D KT LQE+ A+ P Y V G Sbjct: 123 FLDSGIDTCSNLILSWYKFRLDEISPGLNQKDPKTLLQEYLQARKLPLPNYTVIDTKGQA 182 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H+ FTV + G+ + S+R AEQ AA + LK Sbjct: 183 HNQSFTVECVVEGMNSIVSVGSSRRKAEQKAAEKALK 219 >gi|120599802|ref|YP_964376.1| ribonuclease III [Shewanella sp. W3-18-1] gi|146292262|ref|YP_001182686.1| ribonuclease III [Shewanella putrefaciens CN-32] gi|189043352|sp|A4Y4K4|RNC_SHEPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043355|sp|A1RMC7|RNC_SHESW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|120559895|gb|ABM25822.1| RNAse III [Shewanella sp. W3-18-1] gi|145563952|gb|ABP74887.1| RNAse III [Shewanella putrefaciens CN-32] gi|319425561|gb|ADV53635.1| ribonuclease III [Shewanella putrefaciens 200] Length = 226 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/216 (37%), Positives = 122/216 (56%), Gaps = 6/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + +GY F LL +ALTH S ++ + E RLEFLGD IL ++IS L++ F A E Sbjct: 10 LCRTLGYEFTQIELLTQALTHRSAANKHNE---RLEFLGDSILSIVISDALYHQFPKATE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV +T + +A+E L ++ + K SI AD VE++I A+YL Sbjct: 67 GDLSRMRATLVRGDTLTIIAQEFKLGDYLYLGPGELKSGGFRRESILADAVEAIIGAIYL 126 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D +EV + ++ +R ++ G ++DAKT LQE+ P+Y+V G HD Sbjct: 127 DSDLEVCRKLLLTWYAERLAEIQPGVSQKDAKTLLQEYLQGLKKPLPDYQVINIEGDAHD 186 Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221 FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 187 QTFTVECRIEDLSQSVIGVASSRRKAEQIAAAQVLE 222 >gi|113971183|ref|YP_734976.1| ribonuclease III [Shewanella sp. MR-4] gi|122943634|sp|Q0HG98|RNC_SHESM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|113885867|gb|ABI39919.1| RNAse III [Shewanella sp. MR-4] Length = 226 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/216 (37%), Positives = 122/216 (56%), Gaps = 6/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + +GY F N LL +ALTH S ++ + E RLEFLGD IL ++IS L++ F A E Sbjct: 10 LCRTLGYEFKNIELLTQALTHRSAANKHNE---RLEFLGDSILSIVISDALYHQFPKATE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV +T + +A+ L ++ + K SI AD VE++I A+YL Sbjct: 67 GDLSRMRATLVRGDTLTLIAKAFKLGDYLFLGPGELKSGGFRRESILADAVEAIIGAIYL 126 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D +EV + ++ +R ++ G ++DAKT LQE+ P+Y+V G HD Sbjct: 127 DSDLEVCRKLLLHWYAERLAEIQPGVNQKDAKTLLQEYLQGLKKPLPDYQVINIEGDAHD 186 Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221 FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 187 QTFTVECRIDDLSESVIGVASSRRKAEQIAAAQVLE 222 >gi|262368562|ref|ZP_06061891.1| dsRNA-specific ribonuclease [Acinetobacter johnsonii SH046] gi|262316240|gb|EEY97278.1| dsRNA-specific ribonuclease [Acinetobacter johnsonii SH046] Length = 230 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S L + L RIGY F LL+ ALTH S+SH Y +YERLEFLGD +LG++I+ L+ Sbjct: 6 SKLSEARLASRIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYK 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EG L+ +LV E ++A +L L+ + +S+ K SI AD VES Sbjct: 64 AYPTENEGRLTRMRATLVRQEALGKIANDLKLSQSLILSTGELKSGGHHRESILADTVES 123 Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +I A+Y+D + V V K+++ ++ +D K+ LQE+ A+ P Y V Sbjct: 124 IIGAIYVDCSDLTVLEPIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKALPVYDVV 183 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 G + F V ++ GL+ G S+R AEQ AAA++LK Sbjct: 184 DIQGDAPNQHFKVECKVDGLSVVNGEGTSRRFAEQAAAADILK 226 >gi|238897755|ref|YP_002923434.1| RNase III, ds RNA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259491902|sp|C4K3Z3|RNC_HAMD5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|229465512|gb|ACQ67286.1| RNase III, ds RNA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 226 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 127/225 (56%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+++ ++LE ++ Y+F RSLL +ALTH S+ + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNSININSLELKLRYSFKERSLLLQALTHRSL---HTQHNERLEFLGDSILSFVIANQLY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG +S +LV +T +++ARE D+ +++++ K + SI AD +E Sbjct: 58 HRFPEINEGNMSRMRATLVRGDTLTEIAREFDIGAYLQLGQGELKTGGAQRESILADSIE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++LD I+ + +++ +R + ++D KT LQE+ + P Y + Sbjct: 118 AIIGAIFLDSDIQTVEKTILRWYHKRLEQINPTHHQKDPKTRLQEYMQSHQLPLPFYLLA 177 Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL G ++R AEQ AA + LK+ Sbjct: 178 QVCGEAHDQEFTIHCQVSGLEELVVGKGSNRRKAEQEAAEKTLKK 222 >gi|205355648|ref|ZP_03222418.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421] gi|205346425|gb|EDZ33058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421] Length = 225 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 125/220 (56%), Gaps = 8/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF+ F E Sbjct: 8 LEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFAKDAE 65 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I A++L Sbjct: 66 GDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDTLEAIIGAIHL 125 Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G E A T ++K + Q + + +D KT+LQE K G TP+Y+ GPD Sbjct: 126 EAGFEFAKTIALRLIEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 183 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 184 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 223 >gi|87311240|ref|ZP_01093362.1| ribonuclease III [Blastopirellula marina DSM 3645] gi|87285980|gb|EAQ77892.1| ribonuclease III [Blastopirellula marina DSM 3645] Length = 243 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 84/216 (38%), Positives = 121/216 (56%), Gaps = 3/216 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S E RIGY F +SLL+ ALTH+S + ES ERLEFLGD ILG ++ LF+ F Sbjct: 16 SRCEVRIGYEFQEKSLLKSALTHASGASHRLESNERLEFLGDAILGRVVCEALFHSFPHF 75 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ + +VS TC++++R L L F+ V + S S+ ADV E++IAA+ Sbjct: 76 LEGDLTRIKSVVVSRLTCAKLSRVLGLEEFLIVGKGMSSSP-SVPPSLLADVFEAIIAAI 134 Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLDGG + A FV + + SG+ + K+ LQ++A + G TP Y + GPD Sbjct: 135 YLDGGPKPAEDFVLRNLEDEIELAVSGEAGANFKSALQQYAQREHGATPNYLLLDEKGPD 194 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H F V +++G+ +K+ AEQ AA L Sbjct: 195 HSKCFQVAAQVAGIRYVAAWGRNKKEAEQRAAQNAL 230 >gi|108563072|ref|YP_627388.1| ribonuclease III [Helicobacter pylori HPAG1] gi|107836845|gb|ABF84714.1| ribonuclease III [Helicobacter pylori HPAG1] Length = 240 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 19 YTTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 76 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 77 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 136 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 137 VYLEAGLAKVRKIMQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLQEK 194 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A L++ Sbjct: 195 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQK 235 >gi|127511987|ref|YP_001093184.1| ribonuclease III [Shewanella loihica PV-4] gi|189043350|sp|A3QBS7|RNC_SHELP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|126637282|gb|ABO22925.1| RNAse III [Shewanella loihica PV-4] Length = 225 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 84/216 (38%), Positives = 120/216 (55%), Gaps = 5/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + +GY F +LLE+ALTH S + + E RLEFLGD IL ++IS L++ F A E Sbjct: 10 LGRILGYQFQQIALLEQALTHRSAASKHNE---RLEFLGDSILSIVISDALYHQFPKATE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV + +++A+E L ++++ K SI AD +E++I A+YL Sbjct: 67 GDLSRMRATLVCGKMLAEIAKEFKLGDYLKLGPGELKSGGFRRESILADAMEAIIGAIYL 126 Query: 129 DGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 D IE T V ++K R A+ ++D KT LQE P Y V SG H Sbjct: 127 DADIETCRTLVLNWYKSRLAVIEPVNQKDPKTLLQEHLQGFKQPLPVYTVVNISGEAHAQ 186 Query: 188 RFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKR 222 FTV ++ L A G+ S+R AEQ+AAAEVL+R Sbjct: 187 TFTVECKVEQLKEAVIGVANSRRKAEQIAAAEVLER 222 >gi|331082011|ref|ZP_08331139.1| ribonuclease III [Lachnospiraceae bacterium 6_1_63FAA] gi|330405606|gb|EGG85136.1| ribonuclease III [Lachnospiraceae bacterium 6_1_63FAA] Length = 236 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 5/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLF 60 ++ LEK+IGY F N LL ALTHSS ++ +Y+E+ ERLEFLGD +L L S LF Sbjct: 6 KFLELEKKIGYEFENFDLLVNALTHSSYANEHHIAYKENNERLEFLGDAVLELTSSEFLF 65 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG+L+ + S+V T + A+E+ L ++ + SI +D +E Sbjct: 66 YQYADLPEGKLTKKRASIVCEPTLALCAKEISLGDYLLLGKGEEATGGRNRNSIISDAME 125 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI A+YLDGG A FV KY +++ + D+KT LQE A++ +Y + Sbjct: 126 ALIGAIYLDGGFANAKEFVHKYI-LNDIENKQLFYDSKTTLQEIVQAQYEDDVKYVLVKE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH+ F V + +G +K+AAEQ AA +K+ Sbjct: 185 EGPDHNKSFYVEALLGDKKLGEGCGHTKKAAEQQAAYCAIKK 226 >gi|297343244|pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni gi|297343245|pdb|3N3W|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 248 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 124/220 (56%), Gaps = 8/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ + Y F +++LL ALTH S SY ERLEFLGD +L L++ LF+ F E Sbjct: 31 LEQSLTYEFKDKNLLIHALTHKSFKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 88 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I A++L Sbjct: 89 GDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHL 148 Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G E A T ++K + Q + + +D KT+LQE K G TP+Y+ GPD Sbjct: 149 EAGFEFAKTIALRLIEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 206 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 207 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 246 >gi|317010882|gb|ADU84629.1| ribonuclease III [Helicobacter pylori SouthAfrica7] Length = 234 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 125/225 (55%), Gaps = 9/225 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 13 YITLEKALGYSFKDKHLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 70 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA+ +++A+ + L ++RVSS SI + E+L+A Sbjct: 71 YDEGKLSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEETSKGREKPSILSSAFEALMAG 130 Query: 126 LYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G++ + +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 131 VYLEAGLDKVRKIMQNLLNRAYKRLDLEH--LSVDYKTALQELTQAQFCVIPTYQLLKEK 188 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR-EGI 225 GP H F + + I A SK+ AEQ A + L++ +GI Sbjct: 189 GPAHHKEFEMALYIQNQMYATAKGKSKKEAEQQCAYQALQKLKGI 233 >gi|323705471|ref|ZP_08117046.1| ribonuclease III [Thermoanaerobacterium xylanolyticum LX-11] gi|323535373|gb|EGB25149.1| ribonuclease III [Thermoanaerobacterium xylanolyticum LX-11] Length = 232 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 120/226 (53%), Gaps = 5/226 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFN 61 RY LEK +GY F N+ LL+ ALTHSS S ++ S ERLEFLGD +L ++IS L+ Sbjct: 6 RYENLEKNMGYTFNNKKLLKNALTHSSWANESKNFLSSNERLEFLGDSVLSIVISEYLYK 65 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + +EG LS +V + ++ ARE+D+ ++ + SI AD +E+ Sbjct: 66 NRTDLEEGYLSKYRAEIVCEPSLARCAREIDIGKYLNIGRGEEMTGGRNRDSILADAMEA 125 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LIAA+YLD ++ V + +++ + SG RD KT+LQE YK+ Sbjct: 126 LIAAVYLDSDLKTVSEVVLRLFEKIINEVLSGLIYRDYKTKLQEVTQKMGSERVIYKLID 185 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDH+ F + V + +G SK+ AEQ AA E L + G+ Sbjct: 186 EYGPDHNKMFVIEVFVGENRLGRGKGRSKKEAEQYAAMEALSKMGL 231 >gi|292490849|ref|YP_003526288.1| ribonuclease III [Nitrosococcus halophilus Nc4] gi|291579444|gb|ADE13901.1| ribonuclease III [Nitrosococcus halophilus Nc4] Length = 231 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 83/213 (38%), Positives = 119/213 (55%), Gaps = 6/213 (2%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 ++GY F +LL A+TH S + +E+ ERLEFLGD IL LI+ L+ F A+EG+L Sbjct: 11 KLGYRFTEPALLRCAITHRSAA---KENNERLEFLGDSILNFLIAEFLYIRFPKAQEGKL 67 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 S +LV ET +++AREL++ + + K TSI AD E++I A+YLDGG Sbjct: 68 SRLRATLVKGETLAELARELEIGDHLILGPGELKSGGYRRTSILADAFEAVIGAVYLDGG 127 Query: 132 IEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 +E V ++ R AL S +D KT LQE+ A+ P+Y+V+ G HD F Sbjct: 128 LEACRKLVASLYEDRLEALTSEVLLKDPKTRLQEYLQARQLPLPDYRVSAVRGEAHDQVF 187 Query: 190 TVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 V I+ P+ G S+R AEQ AA + L+ Sbjct: 188 QVECIINDTFPSVVGTGRSRRKAEQDAATQALE 220 >gi|331084978|ref|ZP_08334065.1| ribonuclease III [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408678|gb|EGG88143.1| ribonuclease III [Lachnospiraceae bacterium 9_1_43BFAA] Length = 229 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 84/220 (38%), Positives = 114/220 (51%), Gaps = 5/220 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLF 60 R LEK+IGY F + LL+KA+ HSS ++ Q+ ERLEFLGD +L L S LF Sbjct: 3 RLKELEKKIGYTFQKKELLQKAMMHSSYTNEKHMKKQDCNERLEFLGDAVLELTTSEALF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 S EGEL+ S+V + VA+EL L S++ + SI +D VE Sbjct: 63 FDNPSMPEGELTKTRASIVCEPALAFVAKELMLGSYLLLGKGEEATGGRQRDSITSDAVE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI A+YLDGG A F+ K+ L++ K D+KT LQE AKF Y + Sbjct: 123 ALIGAIYLDGGFASAKEFIQKFI-LSDLENKKLFYDSKTILQEMVQAKFTENVRYVLEKE 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDH+ FT I G +K+A+EQ AA + + Sbjct: 182 EGPDHNKSFTTSAYIGEECYGTGSGRTKKASEQEAAYQTI 221 >gi|121613213|ref|YP_001001278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176] gi|121504230|gb|EAQ72743.2| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176] Length = 225 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 124/220 (56%), Gaps = 8/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ + Y F +++LL ALTH S SY ERLEFLGD +L L++ LF+ F E Sbjct: 8 LERSLTYEFKDKNLLIHALTHKSFKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 65 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I A++L Sbjct: 66 GDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIGAIHL 125 Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G E A T ++K + Q + + +D KT+LQE K G TP+Y+ GPD Sbjct: 126 EAGFEFAKTIALRLIEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 183 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 184 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 223 >gi|148925776|ref|ZP_01809464.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486] gi|145845786|gb|EDK22877.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486] Length = 229 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 125/220 (56%), Gaps = 8/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF+ F E Sbjct: 12 LEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFAKDAE 69 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I A++L Sbjct: 70 GDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHL 129 Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G E A T ++K + Q + + +D KT+LQE K G TP+Y+ GPD Sbjct: 130 EAGFEFAKTIALRLIEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 187 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 188 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 227 >gi|187918561|ref|YP_001884124.1| ribonuclease III [Borrelia hermsii DAH] gi|119861409|gb|AAX17204.1| ribonuclease III [Borrelia hermsii DAH] Length = 243 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/211 (35%), Positives = 117/211 (55%), Gaps = 7/211 (3%) Query: 17 FANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F + LL +L+HSS ++ + + Y ERLEFLGD +L L+I+ L+ + EGELS Sbjct: 27 FNDIDLLNMSLSHSSYANEFDQKYANNERLEFLGDSVLNLIITDYLYKFYPEKSEGELSK 86 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + +VS E+ S +AREL+L ++I + + I AD +E+ + ALYLDGG Sbjct: 87 ARSYIVSEESLSSIARELNLGNYILLGRGEENNDGRNKKGIIADAIEAFVGALYLDGGFL 146 Query: 134 VAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 A FV + ++ + G F +D K+ LQE+ K+ ++P Y++ GPDH+ F Sbjct: 147 KASAFVVELFEVHIRLMFNRGDF-KDYKSLLQEYVQKKYKISPNYRLAKELGPDHNKIFC 205 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V + ++ + G SK+ AE +AA LK Sbjct: 206 VELYVNDKFISNGKGKSKKEAEMIAAEMALK 236 >gi|86149260|ref|ZP_01067491.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596211|ref|ZP_01099448.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25] gi|218563224|ref|YP_002345004.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|22654076|sp|Q9PM40|RNC_CAMJE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|85840042|gb|EAQ57300.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191052|gb|EAQ95024.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25] gi|112360931|emb|CAL35732.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926829|gb|ADC29181.1| ribonuclease III [Campylobacter jejuni subsp. jejuni IA3902] gi|315927617|gb|EFV06948.1| ribonuclease III [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315928870|gb|EFV08132.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 305] Length = 224 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 124/220 (56%), Gaps = 8/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ + Y F +++LL ALTH S SY ERLEFLGD +L L++ LF+ F E Sbjct: 7 LEQSLTYEFKDKNLLIHALTHKSFKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I A++L Sbjct: 65 GDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHL 124 Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G E A T ++K + Q + + +D KT+LQE K G TP+Y+ GPD Sbjct: 125 EAGFEFAKTIALRLIEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 182 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 183 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222 >gi|50085655|ref|YP_047165.1| ribonuclease III [Acinetobacter sp. ADP1] gi|81392620|sp|Q6F9C2|RNC_ACIAD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|49531631|emb|CAG69343.1| ribonuclease III, ds RNA [Acinetobacter sp. ADP1] Length = 230 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 119/223 (53%), Gaps = 5/223 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S L L+ RIGY F LL+ ALTH S+SH Y +YERLEFLGD +LG++I+ L+ Sbjct: 6 SKLSDPRLQSRIGYEFKQLELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYQ 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ +LV E ++A +L L+ + +S+ K SI AD VE+ Sbjct: 64 AYPHENEGRLTRMRATLVRQEALGKIANDLKLSRCLILSTGELKSGGHHRESILADTVEA 123 Query: 122 LIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +I A+Y+D + + V K++ ++ +D K+ LQE+ A+ P Y+V Sbjct: 124 IIGAIYVDSNDLNLLKNIVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVV 183 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 G + F VV + GL G S+R AEQ AAAE+LK Sbjct: 184 DIQGDAPNQHFKVVCLVEGLPRVMGEGSSRRFAEQTAAAEILK 226 >gi|86152963|ref|ZP_01071168.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13] gi|167006173|ref|ZP_02271931.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176] gi|85843848|gb|EAQ61058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13] Length = 224 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 124/220 (56%), Gaps = 8/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ + Y F +++LL ALTH S SY ERLEFLGD +L L++ LF+ F E Sbjct: 7 LERSLTYEFKDKNLLIHALTHKSFKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I A++L Sbjct: 65 GDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIGAIHL 124 Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G E A T ++K + Q + + +D KT+LQE K G TP+Y+ GPD Sbjct: 125 EAGFEFAKTIALRLIEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 182 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 183 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222 >gi|149194957|ref|ZP_01872050.1| ribonuclease III [Caminibacter mediatlanticus TB-2] gi|149134878|gb|EDM23361.1| ribonuclease III [Caminibacter mediatlanticus TB-2] Length = 227 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 120/220 (54%), Gaps = 7/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+K +GY F + L+ +ALTH S S + ERLE+LGD +L L++ L+N F A+E Sbjct: 6 LQKSLGYQFKDEKLITEALTHRSYSKEFNN--ERLEYLGDAVLDLIVGEYLYNLFPKAEE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS +LV+ E+ ++A+ L+L ++ +S + SI + E+LI ALYL Sbjct: 64 GILSKLRAALVNEESFDKLAKRLNLGKYLFLSPAEENNKGREKPSILSSAFEALIGALYL 123 Query: 129 DGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + G + A K K+ K + +D KT LQE A FGV PEY++ +GPDH Sbjct: 124 EAGFDKAKEIALKLLKEEYPKITPEELLKDYKTTLQEITQAHFGVVPEYRLLSATGPDHK 183 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA---AEVLKRE 223 F + V I+ A+ SK+AA+Q A E LK+E Sbjct: 184 KEFEIGVFINDREYARAKGRSKKAAQQEGARLTIEKLKKE 223 >gi|15611674|ref|NP_223325.1| ribonuclease III [Helicobacter pylori J99] gi|7531198|sp|Q9ZLH2|RNC_HELPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|4155159|gb|AAD06188.1| RIBONUCLEASE III [Helicobacter pylori J99] Length = 239 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLQEK 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 194 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQK 234 >gi|260588638|ref|ZP_05854551.1| ribonuclease III [Blautia hansenii DSM 20583] gi|260541113|gb|EEX21682.1| ribonuclease III [Blautia hansenii DSM 20583] Length = 263 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 5/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLF 60 ++ LEK+IGY F N LL ALTHSS ++ +Y+E+ ERLEFLGD +L L S LF Sbjct: 33 KFLELEKKIGYEFENFDLLVNALTHSSYANEHHIAYKENNERLEFLGDAVLELTSSEFLF 92 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG+L+ + S+V T + A+E+ L ++ + SI +D +E Sbjct: 93 YQYADLPEGKLTKKRASIVCEPTLALCAKEISLGDYLLLGKGEEATGGRNRNSIISDAME 152 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI A+YLDGG A FV KY +++ + D+KT LQE A++ +Y + Sbjct: 153 ALIGAIYLDGGFANAKEFVHKYI-LNDIENKQLFYDSKTTLQEIVQAQYEDDVKYVLVKE 211 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH+ F V + +G +K+AAEQ AA +K+ Sbjct: 212 EGPDHNKSFYVEALLGDKKLGEGCGHTKKAAEQQAAYCAIKK 253 >gi|308182848|ref|YP_003926975.1| ribonuclease III [Helicobacter pylori PeCan4] gi|308065033|gb|ADO06925.1| ribonuclease III [Helicobacter pylori PeCan4] Length = 239 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA+ +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAQGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPIYQLLKEK 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 194 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQK 234 >gi|308187806|ref|YP_003931937.1| RNase III, ds RNA [Pantoea vagans C9-1] gi|308058316|gb|ADO10488.1| RNase III, ds RNA [Pantoea vagans C9-1] Length = 226 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 125/228 (54%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPILINKLQRKLGYTFTHSELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD IE + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSSIERVEQLILDWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225 G HD FT+ ++SG+A P G+ S+R AEQ AA + L + G+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRKAEQAAAEQALIKLGL 225 >gi|110801795|ref|YP_699005.1| ribonuclease III [Clostridium perfringens SM101] gi|110682296|gb|ABG85666.1| ribonuclease III [Clostridium perfringens SM101] Length = 241 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 123/221 (55%), Gaps = 6/221 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSA 66 +EK IG F N+ +L ALTHSS ++ +++ ERLEFLGD +L L ++ LFN++ Sbjct: 13 VEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKYLFNNYKDK 72 Query: 67 KEGELSVRFNSLVSAE-TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL+ + +LV E + +V++ L L +IR+S TSIQAD +E++IAA Sbjct: 73 SEGELT-KIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADALEAVIAA 131 Query: 126 LYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD GIEVA F+ + +K K + + D KT LQE V Y + GP Sbjct: 132 VYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYNLVKHEGP 191 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H +F + I+ QG+ SK+ +EQ AA L+R G Sbjct: 192 PHRRKFFTDLLINNEVMGQGVGFSKKESEQNAAKAALQRLG 232 >gi|90407379|ref|ZP_01215564.1| ribonuclease III [Psychromonas sp. CNPT3] gi|90311530|gb|EAS39630.1| ribonuclease III [Psychromonas sp. CNPT3] Length = 231 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 118/222 (53%), Gaps = 5/222 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LE+RIGY F N +LL++ALTH S ++ E RLEFLGD IL +IST L+ Sbjct: 5 MKETELKRLERRIGYKFNNFALLKQALTHRSALGAHNE---RLEFLGDSILSFVISTDLY 61 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+LS +LV + +++ RE +L + + K SI AD VE Sbjct: 62 LRFPKVNEGDLSRMRATLVCGKMLAEIGREFELGDSLILGPGELKSGGFRRDSIIADGVE 121 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 S+I A++LD I V ++ R ++ G ++D KT LQE ++ P Y+V Sbjct: 122 SIIGAVFLDSDINSVDRLVLAWFNSRLTTIEPGIGQKDPKTRLQEHLQSRKQGLPLYEVL 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 G H+ RFT+ I G+ QG S+R AEQ+AA ++L Sbjct: 182 EIRGEAHNQRFTMSCIIDGIEAVQGQGTSRRKAEQIAAEKML 223 >gi|210134869|ref|YP_002301308.1| ribonuclease III [Helicobacter pylori P12] gi|226741371|sp|B6JLQ0|RNC_HELP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|210132837|gb|ACJ07828.1| ribonuclease III [Helicobacter pylori P12] Length = 239 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLQEK 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 194 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQK 234 >gi|317012480|gb|ADU83088.1| ribonuclease III [Helicobacter pylori Lithuania75] Length = 239 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++R+SS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRISSSEEISNGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 136 VYLEAGLAKVRKIMQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLQEK 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 194 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQK 234 >gi|226328142|ref|ZP_03803660.1| hypothetical protein PROPEN_02033 [Proteus penneri ATCC 35198] gi|225203846|gb|EEG86200.1| hypothetical protein PROPEN_02033 [Proteus penneri ATCC 35198] Length = 227 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 115/213 (53%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L + L+K++GY F LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNTLLVNQLQKKLGYTFTQNELLLQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIE-VAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +LI A++LD I+ + + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGAIFLDSDIQNIEKKIILNWYENRLAEISPGDKQKDPKTRLQEYLQGRHLPLPSYNV 177 Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKR 209 G HD FT+ +ISG+ P +GM S+R Sbjct: 178 VQVRGEAHDQEFTIHCQISGIEQPVKGMGTSRR 210 >gi|251772101|gb|EES52671.1| Ribonuclease III [Leptospirillum ferrodiazotrophum] Length = 254 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 122/221 (55%), Gaps = 7/221 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHF 63 LE+R+GY F++ LE+A H S ++ ++ ERLEFLGD +LGL+++ L + Sbjct: 14 LEERLGYRFSSLERLEEATIHKSFTNETKKGGVRRDNERLEFLGDTVLGLVVAEYLMRLW 73 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG LS +VS + +Q+AR + L ++ + SI +D +E++I Sbjct: 74 PDSPEGVLSKLKGRIVSEPSLAQIARNIGLGRYLLIGRGEEMTQGREKNSILSDALEAVI 133 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+Y DGG++ A F+ + +++ ++ G+ D KT+LQE+ + P+Y +T +S Sbjct: 134 AAIYQDGGLDAARQFILREFRELFESVSRGESVADYKTQLQEYCQRELETLPQYVITGQS 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F V V I +G SK+ AEQ AA L+R Sbjct: 194 GPDHQKVFEVAVRIRDKNWGEGQGHSKKEAEQKAAKSALER 234 >gi|27904735|ref|NP_777861.1| ribonuclease III [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29427422|sp|P59476|RNC_BUCBP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|27904132|gb|AAO26966.1| ribonuclease III [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 226 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 119/220 (54%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+K +GY F + LL +ALTH S + + E RLEFLGD IL +I+ L++ F E Sbjct: 9 LQKILGYTFIKKDLLIQALTHRSANSKHNE---RLEFLGDSILSFVIANALYHCFPHVNE 65 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++A E DL ++++ K SI A+ VE+LI +++L Sbjct: 66 GDMSRMRATLVRGHTLAKIAYEFDLGDYLQLGQGELKSGGFRRESILANTVEALIGSIFL 125 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D ++ + K++K R A+ ++D KT LQE+ +K P Y V G H+ Sbjct: 126 DSNLKTIEKLILKWYKNRLKAINPSDTQKDPKTRLQEYLQSKHLPLPSYLVEQVYGEAHN 185 Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225 FT+ EISG+ G+ S+R AEQ AA L + GI Sbjct: 186 QLFTIYCEISGINEKTIGIGSSRRKAEQEAAQNALIKLGI 225 >gi|15616869|ref|NP_240082.1| ribonuclease III [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681624|ref|YP_002468010.1| ribonuclease III [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682181|ref|YP_002468565.1| ribonuclease III [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471312|ref|ZP_05635311.1| ribonuclease III [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11134313|sp|P57346|RNC_BUCAI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807240|sp|B8D951|RNC_BUCA5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807241|sp|B8D7F5|RNC_BUCAT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|25289216|pir||H84959 ribonuclease III (EC 3.1.26.3) [imported] - Buchnera sp. (strain APS) gi|10038933|dbj|BAB12968.1| ribonuclease III [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621914|gb|ACL30070.1| ribonuclease III [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624467|gb|ACL30622.1| ribonuclease III [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085996|gb|ADP66078.1| ribonuclease III [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086571|gb|ADP66652.1| ribonuclease III [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087152|gb|ADP67232.1| ribonuclease III [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087686|gb|ADP67765.1| ribonuclease III [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 226 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 125/228 (54%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + ++K +GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNHIVTKKIQKVLGYTFTHKDLLKQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 HF EG++S +LV T +++A E DL ++++ K SI A+ VE Sbjct: 58 QHFPYIDEGDMSRMRATLVRGNTLAEIAYEFDLGEYLKLGQGELKSGGFRRESILANTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++YLD I+ + K++++R + G ++D KT LQE+ +K P Y + Sbjct: 118 ALIGSIYLDSNIKTVEELILKWYEKRLEKISPGDTQKDPKTRLQEYLQSKHLSLPLYFIV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225 G H+ FT+ +IS ++ G S+R AEQ AA + L + G+ Sbjct: 178 EVYGEAHNQLFTIHCKISTISEYLIGTGSSRRKAEQDAAQKALIKLGV 225 >gi|317014083|gb|ADU81519.1| ribonuclease III [Helicobacter pylori Gambia94/24] Length = 239 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 117/220 (53%), Gaps = 6/220 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++R+SS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRISSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YL+ G+ + K RA K D KT LQE A+F V P Y++ G Sbjct: 136 VYLEAGLAKVRKIIQKLL-NRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKG 194 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 PDH F + + I A SK+ AEQ A + L++ Sbjct: 195 PDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQK 234 >gi|259907677|ref|YP_002648033.1| ribonuclease III [Erwinia pyrifoliae Ep1/96] gi|224963299|emb|CAX54784.1| Ribonuclease III [Erwinia pyrifoliae Ep1/96] gi|283477528|emb|CAY73444.1| RNase III, ds RNA [Erwinia pyrifoliae DSM 12163] gi|310764815|gb|ADP09765.1| ribonuclease III [Erwinia sp. Ejp617] Length = 226 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 123/228 (53%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINKLQRKLGYTFTHQELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEQLILSWYASRLDQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225 G HD FT+ ++SG+A P G S+R AEQ AA + L + GI Sbjct: 178 QVRGEAHDQEFTIHCQVSGMADPVVGTGSSRRKAEQAAAEQALTKLGI 225 >gi|317177479|dbj|BAJ55268.1| ribonuclease III [Helicobacter pylori F16] Length = 239 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YITLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 136 VYLEAGLAKVRKITQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 194 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 234 >gi|260775208|ref|ZP_05884106.1| ribonuclease III [Vibrio coralliilyticus ATCC BAA-450] gi|260608909|gb|EEX35071.1| ribonuclease III [Vibrio coralliilyticus ATCC BAA-450] Length = 225 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 6/206 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LEK++GY F + L+ ALTH S ++ + ERLEFLGD IL +I+ L++ F Sbjct: 6 AKLEKKLGYQFNDAELINLALTHRS---AHGKHNERLEFLGDSILSFVIADDLYHRFPKV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE +L +++ K SI AD VE++I A+ Sbjct: 63 NEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD IEV + ++KQR A++ G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSDIEVVRGIILSWYKQRLEAIQPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKR 209 H+ +FTV E++G+ +P G S+R Sbjct: 183 HNQQFTVSCEVAGVGSPVIGKGTSRR 208 >gi|332673509|gb|AEE70326.1| ribonuclease III [Helicobacter pylori 83] Length = 239 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YITLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 136 VYLEAGLAKVRKITQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 194 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 234 >gi|126173439|ref|YP_001049588.1| ribonuclease III [Shewanella baltica OS155] gi|160874397|ref|YP_001553713.1| ribonuclease III [Shewanella baltica OS195] gi|217974269|ref|YP_002359020.1| ribonuclease III [Shewanella baltica OS223] gi|304409362|ref|ZP_07390982.1| ribonuclease III [Shewanella baltica OS183] gi|307303720|ref|ZP_07583473.1| ribonuclease III [Shewanella baltica BA175] gi|189043346|sp|A3D1V6|RNC_SHEB5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043348|sp|A9L5N6|RNC_SHEB9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807898|sp|B8EBQ2|RNC_SHEB2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|125996644|gb|ABN60719.1| RNAse III [Shewanella baltica OS155] gi|160859919|gb|ABX48453.1| Ribonuclease III [Shewanella baltica OS195] gi|217499404|gb|ACK47597.1| Ribonuclease III [Shewanella baltica OS223] gi|304351880|gb|EFM16278.1| ribonuclease III [Shewanella baltica OS183] gi|306912618|gb|EFN43041.1| ribonuclease III [Shewanella baltica BA175] gi|315266632|gb|ADT93485.1| ribonuclease III [Shewanella baltica OS678] Length = 226 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 82/216 (37%), Positives = 122/216 (56%), Gaps = 6/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + + Y F N LL +ALTH S ++ + E RLEFLGD IL ++IS L++ F A E Sbjct: 10 LCRTLSYEFKNIELLTQALTHRSAANKHNE---RLEFLGDSILSIVISDALYHQFPKATE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV +T + +A+E L ++ + K SI AD VE++I A+YL Sbjct: 67 GDLSRMRATLVRGDTLTIIAQEFKLGDYLYLGPGELKSGGFRRESILADAVEAIIGAVYL 126 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D +EV + K++ +R ++ G ++DAKT LQE P+Y+V G HD Sbjct: 127 DSDLEVCRALLLKWYAERLAEIQPGISQKDAKTLLQEHLQGFKKPLPDYQVINIEGDAHD 186 Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221 FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 187 QTFTVECRIEDLSQSVIGVASSRRKAEQIAAAQVLE 222 >gi|145635204|ref|ZP_01790908.1| ribonuclease III [Haemophilus influenzae PittAA] gi|229845360|ref|ZP_04465491.1| ribonuclease III [Haemophilus influenzae 6P18H1] gi|145267483|gb|EDK07483.1| ribonuclease III [Haemophilus influenzae PittAA] gi|229811668|gb|EEP47366.1| ribonuclease III [Haemophilus influenzae 6P18H1] Length = 227 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 122/223 (54%), Gaps = 17/223 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++IGY F N +LL++ALTH S + + E RLEFLGD IL I+ L++ F E Sbjct: 7 LERKIGYCFNNIALLKQALTHRSAATQHNE---RLEFLGDSILNFTIAEALYHQFPRCNE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +LV T + +AR+ +L ++ + S K+ SI AD VE++I A+ L Sbjct: 64 GELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSL 123 Query: 129 DGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D G+ V T V + W Q+ L K G ++DAKT LQE+ K P Y+V G H Sbjct: 124 DQGLAVT-TQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGEAH 182 Query: 186 DPRFTVVVEISGLAPAQGMD-------CSKRAAEQVAAAEVLK 221 FTV ++ A+ +D S+R AEQ AA ++LK Sbjct: 183 CQIFTVKCKVKS---AEKIDRTFVAKGSSRRKAEQAAAEQILK 222 >gi|157415855|ref|YP_001483111.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116] gi|283957021|ref|ZP_06374493.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336] gi|189043300|sp|A8FNU7|RNC_CAMJ8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157386819|gb|ABV53134.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116] gi|283791522|gb|EFC30319.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336] gi|307748491|gb|ADN91761.1| Ribonuclease 3 [Campylobacter jejuni subsp. jejuni M1] gi|315931680|gb|EFV10641.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 327] Length = 224 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 124/220 (56%), Gaps = 8/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ + Y F +++LL ALTH S SY ERLEFLGD +L L++ LF+ F E Sbjct: 7 LEQSLTYEFKDKNLLIHALTHKSFKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I A++L Sbjct: 65 GDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIGAIHL 124 Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G E A T ++K + Q + + +D KT+LQE K G TP+Y+ GPD Sbjct: 125 EAGFEFAKTIALRLIEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 182 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 183 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222 >gi|288575033|ref|ZP_06393390.1| ribonuclease III [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570774|gb|EFC92331.1| ribonuclease III [Dethiosulfovibrio peptidovorans DSM 11002] Length = 244 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 121/223 (54%), Gaps = 10/223 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFD 64 S ++ R+GY+F + LL +ALTHSS +H + ERLEFLGD +L L ST LF Sbjct: 11 SLIQDRLGYSFTDIELLREALTHSSYAHESGLRSWNERLEFLGDAVLELATSTRLFRAMK 70 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK--DVCSFMTSIQADVVESL 122 EG L+ LV E A L L+ +RV+ LRK + C ++S+ AD +E++ Sbjct: 71 DMDEGGLTRLRARLVRKEALLTWAEALGLSGILRVNRGLRKKGEGCD-LSSMHADAIEAI 129 Query: 123 IAALYLDGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 A+Y+DGG ++A + V++Y K ++ G D K+ELQ+ K PEY++ Sbjct: 130 FGAVYMDGGYDMAESVVNRYLDFLFEKGDYIQDGNSSIDPKSELQQILQIKGEPLPEYRI 189 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 R GP H P F V + +SG+ + G S + AE AA + L Sbjct: 190 MSREGPPHSPSFEVELYVSGVLLSSGRGRSIKEAEVQAALDGL 232 >gi|302036171|ref|YP_003796493.1| ribonuclease III [Candidatus Nitrospira defluvii] gi|300604235|emb|CBK40567.1| Ribonuclease III [Candidatus Nitrospira defluvii] Length = 234 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 117/221 (52%), Gaps = 9/221 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 +++ +GY F LLE+ALTH S S+ + ERLEFLGD +L L++S L F Sbjct: 10 VQRLLGYRFHQPRLLEEALTHKSYSNERRSRDRTQNERLEFLGDAVLSLVMSEYLAAEFP 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG LS LVS + ++ AR + L +R+ S+ AD +E+LIA Sbjct: 70 GSNEGGLSKLKAHLVSEASLAKAARRMKLGRLLRLGKGEELSKGREKHSLLADALEALIA 129 Query: 125 ALYLDGGIEVAGTFV-----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 A+YLDGG+E + F ++ RA ++ D KT+LQE ++ P+Y+ Sbjct: 130 AIYLDGGLEASRKFTLQVLEEELLATRAEQARPGMEDYKTQLQEVCQKRYESLPQYETVR 189 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 SGPDH+ F V + I G+ G SK+ AEQ+AA E L Sbjct: 190 ESGPDHEKVFEVELTIQGVMRGIGRGRSKKEAEQMAAKEAL 230 >gi|110798679|ref|YP_696405.1| ribonuclease III [Clostridium perfringens ATCC 13124] gi|110673326|gb|ABG82313.1| ribonuclease III [Clostridium perfringens ATCC 13124] Length = 241 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 123/221 (55%), Gaps = 6/221 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSA 66 +EK IG F N+ +L ALTHSS ++ +++ ERLEFLGD +L L ++ LFN++ Sbjct: 13 VEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKYLFNNYKDK 72 Query: 67 KEGELSVRFNSLVSAE-TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL+ + +LV E + +V++ L L +IR+S TSIQAD +E++IAA Sbjct: 73 SEGELT-KIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADALEAVIAA 131 Query: 126 LYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD GIEVA F+ + +K K + + D KT LQE V Y + GP Sbjct: 132 VYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYNLVKHEGP 191 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H +F + I+ QG+ SK+ +EQ AA L+R G Sbjct: 192 PHRRKFFTDLLINNEIMGQGVGFSKKESEQNAAKAALQRLG 232 >gi|296273889|ref|YP_003656520.1| ribonuclease III [Arcobacter nitrofigilis DSM 7299] gi|296098063|gb|ADG94013.1| ribonuclease III [Arcobacter nitrofigilis DSM 7299] Length = 223 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y LEK + Y F N+ L+ +ALTH S Y ERLEFLGD +L L++ L+ F Sbjct: 4 YVNLEKCLDYQFKNKDLIVEALTHKSFKKPYNN--ERLEFLGDAVLNLIVGEYLYKKFPQ 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 + EG+LS SLV+ +++A E+ L +I +S ++ SI +D ES++ A Sbjct: 62 SNEGDLSKIRASLVNETGFTKLANEIKLGDYIYLSIAEERNKGRTKASILSDAFESIMGA 121 Query: 126 LYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+E + T ++K + + L D KT LQE A+FG P+YK+ Sbjct: 122 IYLESGLETLKPIILTLLEKSYDKINLDV--LFSDYKTALQEITQAEFGSIPDYKIEGSY 179 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F V + I+ Q + SK+ A+Q A L + Sbjct: 180 GPDHKKEFEVSIWINNQCYGQAIGKSKKLAQQAVAKIALDK 220 >gi|167758292|ref|ZP_02430419.1| hypothetical protein CLOSCI_00630 [Clostridium scindens ATCC 35704] gi|167664189|gb|EDS08319.1| hypothetical protein CLOSCI_00630 [Clostridium scindens ATCC 35704] Length = 235 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 82/212 (38%), Positives = 112/212 (52%), Gaps = 5/212 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LEK+IGY F + LL+KA+ HSS ++ E ERLEFLGD +L L+ S LF + Sbjct: 12 LEKKIGYTFKDLQLLKKAMLHSSYANEKHLPKYECNERLEFLGDAVLELVSSEFLFYEHE 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ S+V + AREL L ++ + SI +D +E+LI Sbjct: 72 KMPEGELTKTRASMVCEPALAFCARELSLGEYLLLGKGEEATGGRKRESITSDAMEALIG 131 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+Y+DGG A F+ ++ Q L+ K D+KT LQE A F T Y++ GPD Sbjct: 132 AIYIDGGFASAKEFIHRFILQD-LEDKKLFFDSKTILQEIVQANFKETISYRLVREEGPD 190 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 HD F V+V I G +K+AAEQ AA Sbjct: 191 HDKSFHVMVYIGEEEYGLGKGRTKKAAEQEAA 222 >gi|325677853|ref|ZP_08157495.1| ribonuclease III [Ruminococcus albus 8] gi|324110407|gb|EGC04581.1| ribonuclease III [Ruminococcus albus 8] Length = 232 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 122/224 (54%), Gaps = 6/224 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63 + +KRIGY+F N LL +AL+HSS ++ ++ S ERLEFLGD +L +++S +F HF Sbjct: 8 AEFQKRIGYSFKNDRLLYEALSHSSFANENKKQRHSNERLEFLGDSVLSIVVSDYIFEHF 67 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EGEL+ SLV + + + + +L +I + SI +D +E++I Sbjct: 68 KHLPEGELTKLRASLVCEKALFEFSHKFELGKYIFLGKGEELTGGRERASIVSDAMEAVI 127 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLDGG+E A + + + + F D KT LQE EY + Sbjct: 128 AAIYLDGGLEAARKHIMGFLPKDINPAHTETF-HDYKTVLQEVIQRNPEEKIEYFLKGEE 186 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDHD RFTV V+++ +G+ SK++AEQ AA E L GI Sbjct: 187 GPDHDKRFTVQVKLNSNVIGEGVGRSKKSAEQNAAKEALDLMGI 230 >gi|307244287|ref|ZP_07526402.1| ribonuclease III [Peptostreptococcus stomatis DSM 17678] gi|306492437|gb|EFM64475.1| ribonuclease III [Peptostreptococcus stomatis DSM 17678] Length = 235 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 123/220 (55%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE-SY-ERLEFLGDRILGLLISTLLFNHFDSA 66 E++IGY F N++ ++ ALTHSS ++ ++E +Y ERLEFLGD +LGL++S LF + Sbjct: 15 FEEKIGYEFKNKTYIQTALTHSSFANEHKEFNYNERLEFLGDSVLGLVVSDYLFRARNDL 74 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V E+ S VAR+++L + + + S SI AD E++IAA+ Sbjct: 75 PEGKLTRLRANVVCEESLSAVARKINLGDHLFLGKGEKTSGGSDRDSILADATEAVIAAI 134 Query: 127 YLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLDGG + A F+ + K+ G RD KT LQE G YK+ SGPD Sbjct: 135 YLDGGFDQAKDFILSNLRDTIAKNIDGNIFRDYKTILQEIIQGNNGKIS-YKLVGESGPD 193 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H+ F + V+ G +K+ AE+ AA + L + G Sbjct: 194 HNKEFEMQVKCGQDTIGIGKGKNKKEAEKEAARDALVKMG 233 >gi|315586658|gb|ADU41039.1| ribonuclease III [Helicobacter pylori 35A] Length = 238 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 17 YITLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 74 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 75 YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 134 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 135 VYLEAGLAKVCKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 192 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 193 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 233 >gi|328952899|ref|YP_004370233.1| Ribonuclease 3 [Desulfobacca acetoxidans DSM 11109] gi|328453223|gb|AEB09052.1| Ribonuclease 3 [Desulfobacca acetoxidans DSM 11109] Length = 231 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 118/221 (53%), Gaps = 5/221 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57 M+ + + LE+++ Y+F NR LE+AL HSS ++ + S ERLEF GD +L L IS Sbjct: 1 MTDIHLTELERQLRYSFKNRRWLEQALVHSSYAYEFPLQGPSNERLEFFGDAVLSLFISD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L ++ A EG LS SLV+A + +AR LDL +R+ + S+ AD Sbjct: 61 FLMEYYPQAGEGLLSRWRASLVNARHLAGIARSLDLGGHLRLGRGEEQQSGRRKPSVLAD 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEY 175 +E+++AA+YLDGG A V ++ L+ +D KT LQE+A VTP Y Sbjct: 121 ALEAVLAAVYLDGGFAAARGVVKLLFQASLTRLEDKASMQDFKTLLQEYAQKNLKVTPTY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +V +GP H F V V ++ +G SK+ A Q AA Sbjct: 181 RVVTATGPAHARTFEVEVWLADQPWGRGQGKSKKQAAQEAA 221 >gi|254785337|ref|YP_003072766.1| ribonuclease III [Teredinibacter turnerae T7901] gi|237684548|gb|ACR11812.1| ribonuclease III [Teredinibacter turnerae T7901] Length = 229 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 85/231 (36%), Positives = 126/231 (54%), Gaps = 12/231 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +S + + L K + Y F++ SLLEKAL+H S+ + + ERLEFLGD +L LI+ L+ Sbjct: 4 LSKTKLNQLSKALNYTFSDISLLEKALSHRSVGSN---NNERLEFLGDSLLNFLIAENLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A+EG+LS SLV ET +++A++ DL F+ + K SI AD VE Sbjct: 61 QRFPKAREGDLSRLRASLVKGETLAELAKDFDLGEFLYLGEGELKSGGFRRASILADAVE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YL+ G++ V ++ +R A+ +D KT LQE+ P Y V Sbjct: 121 ALIGAIYLESGMDRCRDTVLHWFGERLDAIDLNSSVKDPKTRLQEYLQELRQPLPVYTVE 180 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQG----MDCSKRAAEQVAAAEVLKREGI 225 + G H P F V +I +QG SKR AE++AAA +LK+ G+ Sbjct: 181 SQLGQAHSPEFQVSCDI---GRSQGKTVATSSSKRNAEKLAAAAMLKQLGV 228 >gi|226951500|ref|ZP_03821964.1| ds RNA ribonuclease III [Acinetobacter sp. ATCC 27244] gi|294651022|ref|ZP_06728362.1| ribonuclease III [Acinetobacter haemolyticus ATCC 19194] gi|226837793|gb|EEH70176.1| ds RNA ribonuclease III [Acinetobacter sp. ATCC 27244] gi|292823123|gb|EFF81986.1| ribonuclease III [Acinetobacter haemolyticus ATCC 19194] Length = 231 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L + L+ RIGY F LL+ ALTH S+SH + +YERLEFLGD +LG++I+ L++ Sbjct: 7 NKLNDTRLQARIGYQFQQIDLLKLALTHRSVSHKH--NYERLEFLGDSLLGMIIANYLYH 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EG L+ +LV E ++A +L L+ + +S+ K SI AD VE+ Sbjct: 65 TYPTENEGRLTRMRATLVRQEALGKIANDLQLSRSLILSTGELKSGGHHRESILADTVEA 124 Query: 122 LIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +I A+Y+D + + V K+++ ++ +D K+ LQE+ A+ P Y+V Sbjct: 125 IIGAIYIDSNDLNLLQGIVLKWYEPYFDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVV 184 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 G + F V + GL QG S+R AEQ AAAE+LK Sbjct: 185 DIQGDAPNQHFKVECLVDGLPKIQGEGSSRRFAEQTAAAEILK 227 >gi|327394842|dbj|BAK12264.1| ribonuclease III Rnc [Pantoea ananatis AJ13355] Length = 226 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 125/228 (54%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPILINKLQRKLGYTFTHSELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEKLILDWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225 G HD FT+ ++SG+A P G+ S+R AEQ AA + L + G+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRKAEQAAAEQALIKLGL 225 >gi|295094866|emb|CBK83957.1| RNAse III [Coprococcus sp. ART55/1] Length = 229 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 120/219 (54%), Gaps = 6/219 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 Y LEKRIGY F + LL ALTH+S ++ + ESYERLEFLGD IL ++S LF Sbjct: 5 YGELEKRIGYEFKDIRLLITALTHTSFANELKVNKTESYERLEFLGDAILEYIVSDYLFR 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +EG+L+ SLV T SQ++ L F+ +S + SI D+ ES Sbjct: 65 KKREYEEGKLTKLRASLVCEFTLSQISESLGYGKFVLLSKGEAQTGGRTRKSILCDLFES 124 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 ++ A+YLDGG++VA FV ++ F DAK+ LQE+ K G +Y++ Sbjct: 125 VLGAMYLDGGMDVAKKFVHQFLLDDVETKSLF-YDAKSTLQEFCQ-KNGKELKYELIEEK 182 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP+H+ F I G A A+G +++ +EQ+AA + L Sbjct: 183 GPEHNKIFVSDALIDGQATARGEGSNRKNSEQMAAYKTL 221 >gi|219870402|ref|YP_002474777.1| ribonuclease III [Haemophilus parasuis SH0165] gi|254807496|sp|B8F3C7|RNC_HAEPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|219690606|gb|ACL31829.1| ribonuclease III/dsRNA-specific ribonuclease [Haemophilus parasuis SH0165] Length = 223 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY FAN L +ALTH S + ++ ERLEFLGD IL I L+ F Sbjct: 1 MQLERLQKKLGYQFANLDYLTQALTHRSAAS---KNNERLEFLGDSILNFAIGKALYEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + VAR+ +L ++++ + K SI +D VE++I Sbjct: 58 PKANEGELSRMRAALVKEQTLAVVARQFELGEYMKLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD GI+ A V +++Q ++ G+ ++D KT LQE+ + P Y+V Sbjct: 118 AAVYLDAGIDRAMERVHCWYQQLLNDMQLGEAQKDPKTRLQEYLQGRKLPLPTYEVIDIK 177 Query: 182 GPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V ++ + G S+R AEQ AA +V+K GI Sbjct: 178 GEAHNQTFKVSCKVEKVDEIFIGNGTSRRKAEQDAALQVIKVLGI 222 >gi|153810622|ref|ZP_01963290.1| hypothetical protein RUMOBE_01006 [Ruminococcus obeum ATCC 29174] gi|149833018|gb|EDM88100.1| hypothetical protein RUMOBE_01006 [Ruminococcus obeum ATCC 29174] Length = 223 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 114/206 (55%), Gaps = 7/206 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ IGY F N+ LL++ALTHSS ++ + ERLEFLGD +L L+ S L+ F Sbjct: 4 LEQIIGYTFQNKKLLKQALTHSSYANEKKLGKLGCNERLEFLGDAVLELISSDFLYAKFT 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ + SLV + + AR+ L ++ + SI +D E+L+ Sbjct: 64 QVPEGELTKKRASLVCEPSLAYCARQFGLPQYLLLGKGENMTGGRNRDSIVSDATEALLG 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP-EYKVTFRSGP 183 A+YLDGG E A FV K+ ++ + D+KT LQE K G+ P EY +T SGP Sbjct: 124 AIYLDGGFEPAKDFVLKFI-LNDIEHKQLFYDSKTILQEIVQEK-GIQPVEYILTGESGP 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 DHD +FTV V+++G G +K+ Sbjct: 182 DHDKQFTVSVQVNGQVVGNGTGHTKK 207 >gi|188533138|ref|YP_001906935.1| ribonuclease III [Erwinia tasmaniensis Et1/99] gi|238691985|sp|B2VI46|RNC_ERWT9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|188028180|emb|CAO96038.1| Ribonuclease III [Erwinia tasmaniensis Et1/99] Length = 226 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 123/228 (53%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINKLQRKLGYTFTHQELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGYRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQAVEQLILSWYASRLDQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225 G HD FT+ ++SG+A P G S+R AEQ AA + L + GI Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGTGSSRRKAEQAAAEQALIKLGI 225 >gi|153951733|ref|YP_001398912.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97] gi|189043301|sp|A7H5Y2|RNC_CAMJD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|152939179|gb|ABS43920.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97] Length = 225 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 125/220 (56%), Gaps = 8/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF+ F E Sbjct: 7 LEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFTKDAE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I A++L Sbjct: 65 GDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIGAIHL 124 Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G E A T ++K + Q + + +D KT+LQE K G TP+Y+ GPD Sbjct: 125 EAGFEFAKTIALRLMEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 182 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 183 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222 >gi|124265843|ref|YP_001019847.1| ribonuclease III [Methylibium petroleiphilum PM1] gi|124258618|gb|ABM93612.1| Ribonuclease III [Methylibium petroleiphilum PM1] Length = 248 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 75/193 (38%), Positives = 106/193 (54%), Gaps = 5/193 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +L+ R+G+ FA LL +ALTH S ++ ERLEFLGD +L IS LLF HF Sbjct: 23 FDSLQVRLGHRFAQVGLLGRALTHKSFG---ADNNERLEFLGDAVLSAAISGLLFEHFGQ 79 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 + EG+L+ LV E ++A +L L + +R+S + + SI AD VE+LIAA Sbjct: 80 SGEGDLTRVRAHLVREEMLHRLALDLGLPALLRLSEGEARSGGARRPSILADAVEALIAA 139 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGG A V++ + + + RD KTELQEW A+ P Y++ G Sbjct: 140 VYLDGGFASAQALVERLFTPLVASTAAEAWTRDPKTELQEWLQARRQPVPGYRIESTRGR 199 Query: 184 DHDPRFTVVVEIS 196 H+ FTVV I Sbjct: 200 QHEQMFTVVCSIP 212 >gi|20807916|ref|NP_623087.1| dsRNA-specific ribonuclease [Thermoanaerobacter tengcongensis MB4] gi|22654052|sp|Q8R9W3|RNC_THETN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|20516484|gb|AAM24691.1| dsRNA-specific ribonuclease [Thermoanaerobacter tengcongensis MB4] Length = 228 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65 LE++I Y F +++LL +ALTHSS +H + S ERLEFLGD +L L+IS L+ + Sbjct: 5 LEQKINYEFKDKTLLLEALTHSSWAHEGKNEKVSNERLEFLGDSVLSLVISEYLYKNRKD 64 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG LS +V + ++ AR+++L SF+R+ SI AD +E+L+AA Sbjct: 65 LEEGSLSKYRAEIVCEPSLARCARKIELGSFLRMGKGEEISGGRDRDSILADAMEALLAA 124 Query: 126 LYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLDGG+E + +K+ LK G RD KT LQE + Y++ G Sbjct: 125 VYLDGGLEAVRRVILDLFKEIIDEVLK-GIIYRDYKTRLQEVVQSMEVGKITYELVEEIG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PDH+ F V+I + G SK+ +EQ AA E L + GI Sbjct: 184 PDHNKTFVTQVKIGDVVLGIGQGKSKKESEQAAAMEALSKLGI 226 >gi|170719010|ref|YP_001784170.1| ribonuclease III [Haemophilus somnus 2336] gi|189043321|sp|B0USS1|RNC_HAES2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|168827139|gb|ACA32510.1| Ribonuclease III [Haemophilus somnus 2336] Length = 223 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 125/222 (56%), Gaps = 6/222 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++G+ F N L++ALTH S + + ERLEFLGD IL I L+ F Sbjct: 1 MQLEKLQKKLGHQFTNLDYLKQALTHRSAAAF---NNERLEFLGDSILNFAIGKALYEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EGELS +LV +T + VAR+++L ++++ + K SI +D VE+LI Sbjct: 58 PKSNEGELSRMRATLVKEQTLAVVARQVELGDYLKLGAGELKSGGFRRESILSDCVEALI 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD GI+VA V +++++ +K G+ ++D KT LQE+ PEY+V Sbjct: 118 AAIYLDAGIDVALARVYQWYQELLEQIKPGEAQKDPKTRLQEFLQGHRLKLPEYEVIEIK 177 Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKR 222 G H+ F V ++ L G S+R AEQ AA + +++ Sbjct: 178 GDAHNQSFRVSCKVETLTDVVFGQGTSRRKAEQHAAQQAIEK 219 >gi|86158075|ref|YP_464860.1| ribonuclease III [Anaeromyxobacter dehalogenans 2CP-C] gi|85774586|gb|ABC81423.1| RNAse III [Anaeromyxobacter dehalogenans 2CP-C] Length = 385 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 77/214 (35%), Positives = 117/214 (54%), Gaps = 8/214 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62 LE R+G A A+R ALTH S + ++E ERLEFLGD ++ L +S L Sbjct: 26 GALEARLGLAVADREAALAALTHKSYVNEHREDGLQDNERLEFLGDAVIDLAVSHRLMER 85 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F SA+EG+LS ++V + +++AR LDL + +R+ +S+ AD +E++ Sbjct: 86 FPSAREGDLSKMRAAVVDEQGLAEMARTLDLGALLRLGRGEELTGGRQKSSLLADAMEAV 145 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 IAA+Y G+ +FVD++ + RA +G RD KT+LQE + ++ TP Y+V Sbjct: 146 IAAIYRGQGLPAVLSFVDRFLGEAFARA-AAGTLDRDFKTQLQELSQSRLRATPRYRVVA 204 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 GPDH F V ++ G +G SK+ AEQ Sbjct: 205 EHGPDHSKTFEVETDLRGEVMGRGAGRSKKDAEQ 238 >gi|113461383|ref|YP_719452.1| ribonuclease III [Haemophilus somnus 129PT] gi|112823426|gb|ABI25515.1| RNAse III [Haemophilus somnus 129PT] Length = 227 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 125/222 (56%), Gaps = 6/222 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++G+ F N L++ALTH S + + ERLEFLGD IL I L+ F Sbjct: 5 MQLEKLQKKLGHQFTNLDYLKQALTHRSAAAF---NNERLEFLGDSILNFAIGKALYEKF 61 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EGELS +LV +T + VAR+++L ++++ + K SI +D VE+LI Sbjct: 62 PKSNEGELSRMRATLVKEQTLAVVARQVELGDYLKLGAGELKSGGFRRESILSDCVEALI 121 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD GI+VA V +++++ +K G+ ++D KT LQE+ PEY+V Sbjct: 122 AAIYLDAGIDVALARVYQWYQELLEQIKPGEAQKDPKTRLQEFLQGHRLKLPEYEVIEIK 181 Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKR 222 G H+ F V ++ L G S+R AEQ AA + +++ Sbjct: 182 GDAHNQSFRVSCKVETLTDVVFGQGTSRRKAEQHAAQQAIEK 223 >gi|320536816|ref|ZP_08036812.1| ribonuclease III [Treponema phagedenis F0421] gi|320146325|gb|EFW37945.1| ribonuclease III [Treponema phagedenis F0421] Length = 243 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 81/215 (37%), Positives = 112/215 (52%), Gaps = 8/215 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFD 64 +K+ G+ F N LL A H S SH ++ S+ ERLEFLGD +LGL+ ++ L+N Sbjct: 18 NFQKKAGFKFKNLKLLNLAFHHRSFSHIHEASFQNNERLEFLGDSVLGLVTASCLYNLLS 77 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ LVS ET S +A LD+ +I + +I AD +E++I Sbjct: 78 DCSEGELAKTKAVLVSEETLSDIALSLDVDKYIMLGRGEEMSGGRRKKAILADAMEAIIG 137 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G +VA FV + + +++ D K+ LQE + KF + P Y V G Sbjct: 138 ALYLDSGFKVAEKFVLRIITPKIPLVRNENLHMDYKSALQELSQKKFQILPLYTVVKAQG 197 Query: 183 PDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVA 215 PDHD F V V+I PA G K AA+ VA Sbjct: 198 PDHDRTFWVEVQIHTKKYGPATG-KSKKEAAQAVA 231 >gi|297379862|gb|ADI34749.1| ribonuclease III [Helicobacter pylori v225d] Length = 238 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 17 YATLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 74 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VS +++A+ + L ++RVSS SI + E+L+A Sbjct: 75 YDEGKLSKLRASIVSTHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 134 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 135 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 192 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 193 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 233 >gi|292489090|ref|YP_003531977.1| RNase III, ds RNA [Erwinia amylovora CFBP1430] gi|292900214|ref|YP_003539583.1| Ribonuclease III [Erwinia amylovora ATCC 49946] gi|291200062|emb|CBJ47188.1| Ribonuclease III [Erwinia amylovora ATCC 49946] gi|291554524|emb|CBA22094.1| RNase III, ds RNA [Erwinia amylovora CFBP1430] gi|312173248|emb|CBX81503.1| RNase III, ds RNA [Erwinia amylovora ATCC BAA-2158] Length = 226 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 123/228 (53%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINKLQRKLGYTFTHQELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGYRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQRVEQLILSWYASRLDQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225 G HD FT+ ++SG+A P G S+R AEQ AA + L + GI Sbjct: 178 QVRGEAHDQEFTIHCQVSGMADPVVGTGSSRRKAEQAAAEQALTKLGI 225 >gi|57168805|ref|ZP_00367936.1| ribonuclease III Cj1635c [Campylobacter coli RM2228] gi|57019852|gb|EAL56535.1| ribonuclease III Cj1635c [Campylobacter coli RM2228] Length = 224 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 126/220 (57%), Gaps = 8/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++ Y F ++ LL ALTH S Y ERLEFLGD +L L++ LF+ F E Sbjct: 7 LEQKLAYKFKDKDLLIHALTHKSFKKPYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV+ ++ +++A L+L FI +S+ + SI +D +E+++ A++L Sbjct: 65 GDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDALEAIMGAIHL 124 Query: 129 DGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G + +A ++K + Q + + +D KT+LQE AK G TP+Y+ GPD Sbjct: 125 EAGFDFARNIALKLIEKNFPQ--IDAKNLIKDYKTKLQEITQAKLGQTPQYETVRAFGPD 182 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H +F + + ++G A+ + +K+ A+Q+AA L++ G Sbjct: 183 HLKQFEIALFLNGQELARAIAGNKKEAQQMAAKITLEKLG 222 >gi|33152642|ref|NP_873995.1| ribonuclease III [Haemophilus ducreyi 35000HP] gi|73917578|sp|Q7VL75|RNC_HAEDU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|33148866|gb|AAP96384.1| ribonuclease III [Haemophilus ducreyi 35000HP] Length = 222 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 81/215 (37%), Positives = 119/215 (55%), Gaps = 6/215 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+K+IGY FAN L +ALTH S + ++ ERLEFLGD IL I LF F A E Sbjct: 6 LQKKIGYQFANLDYLLQALTHRSAAA---KNNERLEFLGDSILNYAIGQALFERFPQANE 62 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +LV +T + +AR+ DL ++++ + K SI +D VE++IAA+YL Sbjct: 63 GELSRMRATLVREQTLAILARQFDLGEYMKLGAGELKSGGYRRESILSDCVEAIIAAIYL 122 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G++ A + +++ +K G ++D KT LQE+ + PEY+V G H+ Sbjct: 123 DAGMDKASERIYAWYQTLLDEMKPGDAQKDPKTRLQEFLQGRRLKLPEYEVLDIKGEAHN 182 Query: 187 PRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220 F V +I G+ S+R AEQ AA ++L Sbjct: 183 QIFKVSCKIETFTDIFIGIGTSRRKAEQNAAEQIL 217 >gi|208434584|ref|YP_002266250.1| ribonuclease III [Helicobacter pylori G27] gi|226741372|sp|B5Z735|RNC_HELPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|208432513|gb|ACI27384.1| ribonuclease III [Helicobacter pylori G27] Length = 239 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YTTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS ++VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRAAIVSAHGFTKLAKAIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLQEK 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A L++ Sbjct: 194 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQK 234 >gi|317049180|ref|YP_004116828.1| ribonuclease III [Pantoea sp. At-9b] gi|316950797|gb|ADU70272.1| ribonuclease III [Pantoea sp. At-9b] Length = 226 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 125/228 (54%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPILINKLQRKLGYTFTHPELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSNIQNVEKLILDWYQTRLEQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225 G HD FT+ ++SG+A P G+ S+R AEQ AA + L + G+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRKAEQAAAEQALIKLGL 225 >gi|305432452|ref|ZP_07401614.1| ribonuclease III [Campylobacter coli JV20] gi|304444491|gb|EFM37142.1| ribonuclease III [Campylobacter coli JV20] Length = 225 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 126/220 (57%), Gaps = 8/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++ Y F ++ LL ALTH S Y ERLEFLGD +L L++ LF+ F E Sbjct: 8 LEQKLAYKFKDKDLLIHALTHKSFKKPYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 65 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV+ ++ +++A L+L FI +S+ + SI +D +E+++ A++L Sbjct: 66 GDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDALEAIMGAIHL 125 Query: 129 DGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G + +A ++K + Q + + +D KT+LQE AK G TP+Y+ GPD Sbjct: 126 EAGFDFARNIALKLIEKNFPQ--IDAKNLIKDYKTKLQEITQAKLGQTPQYETVRAFGPD 183 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H +F + + ++G A+ + +K+ A+Q+AA L++ G Sbjct: 184 HLKQFEIALFLNGQELARAIAGNKKEAQQMAAKITLEKLG 223 >gi|254507535|ref|ZP_05119669.1| ribonuclease III [Vibrio parahaemolyticus 16] gi|219549605|gb|EED26596.1| ribonuclease III [Vibrio parahaemolyticus 16] Length = 225 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 113/206 (54%), Gaps = 6/206 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LEK++GY F + L+ ALTH S + + E RLEFLGD IL +I+ L++ F Sbjct: 6 AKLEKKVGYQFNDAELINLALTHRSANGKHNE---RLEFLGDSILSFVIADDLYHRFPKV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE +L +++ K SI AD VE++I A+ Sbjct: 63 NEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD IEV + + +++ R A+K G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSDIEVVRSIILSWYQSRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVTNIKGEA 182 Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKR 209 H+ FTV E++G+ P G S+R Sbjct: 183 HNQEFTVSCEVAGIGQPVIGKGTSRR 208 >gi|168184661|ref|ZP_02619325.1| ribonuclease III [Clostridium botulinum Bf] gi|237795890|ref|YP_002863442.1| ribonuclease III [Clostridium botulinum Ba4 str. 657] gi|182672267|gb|EDT84228.1| ribonuclease III [Clostridium botulinum Bf] gi|229262399|gb|ACQ53432.1| ribonuclease III [Clostridium botulinum Ba4 str. 657] Length = 234 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 6/221 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L+ ++ F N LL+ ALTHSS ++ + + YERLEFLGD +L L+IS L+ ++ Sbjct: 11 LQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDK 70 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 KEGEL+ + +V + ++A+ DL ++++S SI AD VES+IAA+ Sbjct: 71 KEGELTRKRAIIVCENSLYEIAKRWDLGLYLQMSKGEELTGGRERVSILADCVESIIAAI 130 Query: 127 YLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD G++ A FV K +K ++A+K + D KT LQE +T Y++ + GP Sbjct: 131 YLDKGLDHAREFVMKNFKEIIEKAMKD-EIILDYKTTLQEIVQQNNDLTINYELLKQEGP 189 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H RF V I G+ SK+ AEQ AA E LK G Sbjct: 190 PHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 230 >gi|260598950|ref|YP_003211521.1| ribonuclease III [Cronobacter turicensis z3032] gi|260218127|emb|CBA32925.1| Ribonuclease 3 [Cronobacter turicensis z3032] Length = 236 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 11 MNPIVINRLQRKLGYTFHHQDLLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 67 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 68 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 127 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 128 ALIGGIFLDSDIQTVERLILTWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 187 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL+ P G S+R AEQ AA + LK+ Sbjct: 188 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 232 >gi|167854942|ref|ZP_02477717.1| GTP-binding protein LepA [Haemophilus parasuis 29755] gi|167853899|gb|EDS25138.1| GTP-binding protein LepA [Haemophilus parasuis 29755] Length = 223 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY FAN L +ALTH S + ++ ERLEFLGD IL I L+ F Sbjct: 1 MQLERLQKKLGYQFANLDYLTQALTHRSAAS---KNNERLEFLGDSILNFAIGKALYEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + VAR+ +L ++++ + K SI +D VE++I Sbjct: 58 PKADEGELSRMRAALVKEQTLAVVARQFELGEYMKLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD GI+ A V +++Q ++ G+ ++D KT LQE+ + P Y+V Sbjct: 118 AAVYLDAGIDRAMERVHCWYQQLLNDMQLGEAQKDPKTRLQEYLQGRKLPLPTYEVIDIK 177 Query: 182 GPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V ++ + G S+R AEQ AA +V+K GI Sbjct: 178 GEAHNQTFKVSCKVEKVDEIFIGNGTSRRKAEQDAALQVIKVLGI 222 >gi|148380412|ref|YP_001254953.1| ribonuclease III [Clostridium botulinum A str. ATCC 3502] gi|148289896|emb|CAL84004.1| putative ribonuclease III [Clostridium botulinum A str. ATCC 3502] Length = 237 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 6/221 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L+ ++ F N LL+ ALTHSS ++ + + YERLEFLGD +L L+IS L+ ++ Sbjct: 14 LQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDK 73 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 KEGEL+ + +V + ++A+ DL ++++S SI AD VES+IAA+ Sbjct: 74 KEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESIIAAI 133 Query: 127 YLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD G++ A FV K +K ++A+K + D KT LQE +T Y++ + GP Sbjct: 134 YLDKGLDHAREFVMKNFKEIIEKAMKD-EIILDYKTTLQEIVQQNNDLTINYELLKQEGP 192 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H RF V I G+ SK+ AEQ AA E LK G Sbjct: 193 PHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 233 >gi|224372163|ref|YP_002606535.1| ribonuclease III [Nautilia profundicola AmH] gi|223589278|gb|ACM93014.1| ribonuclease III [Nautilia profundicola AmH] Length = 226 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 125/225 (55%), Gaps = 7/225 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ S LEK +GY F N+ L+ +ALTH S + + + ERLEFLGD ++ L++ LF+ F Sbjct: 1 MQISELEKSLGYQFKNKKLITEALTHRS--YKKEVNNERLEFLGDAVMDLIVGEYLFHLF 58 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A+EG LS +LV+ ++ +++A+ L+L ++ +S + SI + E++I Sbjct: 59 PKAEEGILSKLRAALVNEDSFTRLAKRLNLGKYLYLSPAEENNNGREKPSILSSAFEAVI 118 Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YL+ G E A + K+ + + +D KT LQE A FGV PEY++ S Sbjct: 119 GAIYLEAGFEKAKDVALRLLKEEFPIITPEELLKDYKTTLQEITQAHFGVVPEYRLISAS 178 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA---AEVLKRE 223 GPDH F + V I A+ SK+ A+Q A ++LK+E Sbjct: 179 GPDHKKEFEIGVFIQDKEYARAKGKSKKTAQQEGARLTIDMLKKE 223 >gi|295097900|emb|CBK86990.1| RNAse III [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 226 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFHHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 G HD FT+ ++SGL+ P G S+R AEQ AA + LK Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALK 221 >gi|77165916|ref|YP_344441.1| ribonuclease III [Nitrosococcus oceani ATCC 19707] gi|254434280|ref|ZP_05047788.1| ribonuclease III [Nitrosococcus oceani AFC27] gi|90101630|sp|Q3J8D5|RNC_NITOC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|76884230|gb|ABA58911.1| RNAse III [Nitrosococcus oceani ATCC 19707] gi|207090613|gb|EDZ67884.1| ribonuclease III [Nitrosococcus oceani AFC27] Length = 233 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 119/211 (56%), Gaps = 14/211 (6%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +++GY FA +LL A+TH S + +E+ ERLEFLGD IL LI+ L++ F A+EGE Sbjct: 10 RKLGYRFAEPALLRHAITHRSAT---KENNERLEFLGDSILNFLIADFLYSGFPRAQEGE 66 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 LS +LV ET +++AREL++ + + K TSI AD E++I A+YLDG Sbjct: 67 LSRLRATLVKGETLAELARELEIGDHLILGLGELKSGGYRRTSILADAFEAVIGAVYLDG 126 Query: 131 GIEVAGTFVDKYWKQR-------ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 G+E V ++ R AL + K D KT LQE+ A+ P+Y+V+ SG Sbjct: 127 GLEACRKLVSSLYRDRLETLTNEALLNLK---DPKTRLQEYLQARQFPLPDYRVSAVSGE 183 Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 HD F V ++ P+ G+ S+R AEQ Sbjct: 184 AHDQVFQVECTLNNTFPSVIGIGRSRRKAEQ 214 >gi|317057716|ref|YP_004106183.1| ribonuclease III [Ruminococcus albus 7] gi|315449985|gb|ADU23549.1| ribonuclease III [Ruminococcus albus 7] Length = 232 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 6/222 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65 +K+IGY F N LL +AL+HSS ++ ++ S ERLEFLGD +L +++S +F HF Sbjct: 10 FQKKIGYHFKNEKLLYEALSHSSFANENKKQRHSNERLEFLGDSVLSIVVSDHIFEHFKH 69 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL+ SLV + + + +++L +I + SI +D +E++IAA Sbjct: 70 LPEGELTKLRASLVCEKALFEFSHKIELGKYIFLGKGEELTGGRERASIVSDAMEAVIAA 129 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGG+E A + + + + F D KT LQE EY + GP Sbjct: 130 IYLDGGLEAARKHIMNFLPKDLNPAHTDTF-HDYKTVLQEIIQRNPEEKVEYFLKGEDGP 188 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 DHD RFTV V+++ +G+ SK+ AEQ AA E L G+ Sbjct: 189 DHDKRFTVQVKLNNNVIGEGIGRSKKNAEQNAAKEALALMGV 230 >gi|153930813|ref|YP_001384630.1| ribonuclease III [Clostridium botulinum A str. ATCC 19397] gi|153937224|ref|YP_001388147.1| ribonuclease III [Clostridium botulinum A str. Hall] gi|153940610|ref|YP_001391753.1| ribonuclease III [Clostridium botulinum F str. Langeland] gi|168180664|ref|ZP_02615328.1| ribonuclease III [Clostridium botulinum NCTC 2916] gi|226949808|ref|YP_002804899.1| ribonuclease III [Clostridium botulinum A2 str. Kyoto] gi|152926857|gb|ABS32357.1| ribonuclease III [Clostridium botulinum A str. ATCC 19397] gi|152933138|gb|ABS38637.1| ribonuclease III [Clostridium botulinum A str. Hall] gi|152936506|gb|ABS42004.1| ribonuclease III [Clostridium botulinum F str. Langeland] gi|182668630|gb|EDT80609.1| ribonuclease III [Clostridium botulinum NCTC 2916] gi|226841844|gb|ACO84510.1| ribonuclease III [Clostridium botulinum A2 str. Kyoto] gi|295319777|gb|ADG00155.1| ribonuclease III [Clostridium botulinum F str. 230613] gi|322806720|emb|CBZ04289.1| ribonuclease III [Clostridium botulinum H04402 065] Length = 234 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 6/221 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L+ ++ F N LL+ ALTHSS ++ + + YERLEFLGD +L L+IS L+ ++ Sbjct: 11 LQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDK 70 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 KEGEL+ + +V + ++A+ DL ++++S SI AD VES+IAA+ Sbjct: 71 KEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESIIAAI 130 Query: 127 YLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD G++ A FV K +K ++A+K + D KT LQE +T Y++ + GP Sbjct: 131 YLDKGLDHAREFVMKNFKEIIEKAMKD-EIILDYKTTLQEIVQQNNDLTINYELLKQEGP 189 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H RF V I G+ SK+ AEQ AA E LK G Sbjct: 190 PHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 230 >gi|116515099|ref|YP_802728.1| hypothetical protein BCc_163 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285505|sp|Q057R4|RNC_BUCCC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116256953|gb|ABJ90635.1| ribonuclease III [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 226 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + L+K IGY F N +LL+ ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVMKKLQKFIGYTFTNITLLKHALTHRSASSQHNE---RLEFLGDSILSFIIAKALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +HF EG +S +LV T +++A E L ++++ +K SI A+ +E Sbjct: 58 HHFPKMNEGGMSRMRATLVRGNTLAEIATEFSLGKYLQLGQGEKKSGGFKRESILANAIE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IA+++LD I + ++K R + ++D KT LQE+ +K P Y + Sbjct: 118 AIIASIFLDSNIYTVERIILYWYKNRFKKMNPTGTKKDPKTRLQEYLQSKHFSLPIYSIG 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKR 222 G H+ FT+ +I GL+ G+ S+R AEQ AA L R Sbjct: 178 QIYGEAHNQIFTIYCKIDGLSELLIGIGASRRKAEQDAAQNALIR 222 >gi|119944412|ref|YP_942092.1| ribonuclease III [Psychromonas ingrahamii 37] gi|189043334|sp|A1SSM8|RNC_PSYIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|119863016|gb|ABM02493.1| RNAse III [Psychromonas ingrahamii 37] Length = 228 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 116/214 (54%), Gaps = 5/214 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+R+ Y F++ SLL++ALTH S ++ E RLEFLGD IL IST L+ F E Sbjct: 11 LERRVDYTFSDFSLLQQALTHRSALGNHNE---RLEFLGDSILSYAISTDLYARFPKVDE 67 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV + +++ RE L + + K SI AD VE++I A +L Sbjct: 68 GDLSRMRATLVCGKMLAEIGREFQLGDCLILGPGELKSGGFRRDSIIADGVEAIIGAAFL 127 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D I+ + K++ R ++ G ++D KT LQE ++ P Y+V G H+ Sbjct: 128 DSDIDTVKKLILKWFDSRLNTIEPGISQKDPKTRLQEHLQSRKQPLPIYEVLEIKGEAHN 187 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 RFT+ I GL QG S+R AEQ+AA ++L Sbjct: 188 QRFTMSCSIDGLKSVQGQGTSRRKAEQIAANKML 221 >gi|328955642|ref|YP_004372975.1| RNAse III [Coriobacterium glomerans PW2] gi|328455966|gb|AEB07160.1| RNAse III [Coriobacterium glomerans PW2] Length = 241 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 85/218 (38%), Positives = 113/218 (51%), Gaps = 3/218 (1%) Query: 10 EKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 E+ + FA+R LL ALTH S SYERLEFLGD ILG +++ LFN + S Sbjct: 11 EQICHHRFADRQLLRCALTHPSAVEGQPVCASYERLEFLGDSILGAIVAVALFNSYPSID 70 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ SLVS S V EL + I + M S +V ESL+AA+Y Sbjct: 71 EGRLTRLKVSLVSGAMLSDVGLELGIDRCIIFGASETGTGARGMHSALENVYESLVAAMY 130 Query: 128 LDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 LDGG +VA F+ + + A + + K+ LQE G P YK+ SGP H+ Sbjct: 131 LDGGWDVAEAFILRTLEPHLADDRPESVSNPKSILQERVQEDHGEPPCYKLVGMSGPAHE 190 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P FT VV + G+ +G SK+ AE AA + L+R G Sbjct: 191 PTFTAVVLVDGVRCGRGTGSSKKEAEASAARDALERMG 228 >gi|311278500|ref|YP_003940731.1| ribonuclease III [Enterobacter cloacae SCF1] gi|308747695|gb|ADO47447.1| ribonuclease III [Enterobacter cloacae SCF1] Length = 226 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFHHQELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEQLILSWYQSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL+ P G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 222 >gi|157825292|ref|YP_001493012.1| ribonuclease III [Rickettsia akari str. Hartford] gi|189043339|sp|A8GM79|RNC_RICAH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157799250|gb|ABV74504.1| ribonuclease III [Rickettsia akari str. Hartford] Length = 227 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 + TLEK +GY+F N+ LL +AL+H S+ + Y + YERLEFLGD +L L+++ +LF Sbjct: 4 FETLEKLLGYSFKNQELLIEALSHPSLRQHHEYKYDKDYERLEFLGDAVLNLVVTEILFR 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +F S EG L+ + LV ET V +L L +I ++ + + +E+ Sbjct: 64 NFASYNEGNLAKIRSYLVCKETICVVGTKLTLKDYIIMTYGEEVAGGRDNPNNIENAMEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 LIAA+YLD IE + K W++ D KT LQEWA A P Y++ R Sbjct: 124 LIAAIYLDSNIETTRNIIGKLWEEFIKIQNLTDYDPKTALQEWAQASSHHLPIYRLIKRE 183 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G H FTV+V++ G S + AE+ AA ++L R Sbjct: 184 GAAHSSTFTVLVKVKDYEQT-GTGHSIKEAEKNAARDLLHR 223 >gi|217032489|ref|ZP_03437981.1| hypothetical protein HPB128_156g19 [Helicobacter pylori B128] gi|298736360|ref|YP_003728886.1| ribonuclease 3 [Helicobacter pylori B8] gi|216945835|gb|EEC24456.1| hypothetical protein HPB128_156g19 [Helicobacter pylori B128] gi|298355550|emb|CBI66422.1| ribonuclease 3 [Helicobacter pylori B8] Length = 239 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 121/221 (54%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLQEK 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A L++ Sbjct: 194 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQK 234 >gi|299769157|ref|YP_003731183.1| ribonuclease III [Acinetobacter sp. DR1] gi|298699245|gb|ADI89810.1| ribonuclease III [Acinetobacter sp. DR1] Length = 230 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 117/213 (54%), Gaps = 5/213 (2%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 RIGY F LL+ ALTH S+SH Y +YERLEFLGD +LG++I+ L++ + + EG L Sbjct: 16 RIGYQFKQLELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPNENEGRL 73 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + +LV E ++A +L L+ + +S+ K SI AD VE++I A+Y+D G Sbjct: 74 TRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYIDSG 133 Query: 132 -IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 + + V K++ ++ +D K+ LQE+ A+ P Y+V G Sbjct: 134 DLNLLTDIVLKWYVPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQH 193 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V I GL+ G S+R AEQ AAAE+LK Sbjct: 194 FKVECLIDGLSKIHGEGSSRRFAEQAAAAEILK 226 >gi|238920905|ref|YP_002934420.1| ribonuclease III [Edwardsiella ictaluri 93-146] gi|259491900|sp|C5B8Y2|RNC_EDWI9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238870474|gb|ACR70185.1| ribonuclease III, putative [Edwardsiella ictaluri 93-146] Length = 226 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 122/225 (54%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFRQHDLLMQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIERLILDWYRSRLEEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL AP G+ S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSAPVVGVGSSRRKAEQAAAEQALKQ 222 >gi|242309254|ref|ZP_04808409.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489] gi|239524295|gb|EEQ64161.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489] Length = 224 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 119/223 (53%), Gaps = 7/223 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + ++ ++ +GY F N++LL++ALTH S S ERLEFLGD +L L+I L+ F Sbjct: 1 MDFNHFQQTLGYHFKNQNLLKEALTHKSAKKSTHN--ERLEFLGDAVLDLIIGEFLYKKF 58 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S+ EGELS S+V+ + +++AR L + ++ +S ++ SI ++ E++I Sbjct: 59 PSSPEGELSKMRASMVNEKAFAKIARYLGIGEYLFISHSEEQNHGRDKDSILSNAFEAII 118 Query: 124 AALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YL+ G+E V K + + D KT LQE A FGV PEY V Sbjct: 119 GAIYLESGLEKVQKIVLKILEILYPKIDIQHLFYDHKTSLQELTQALFGVIPEYVVLDSK 178 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLK 221 GPDH+ F + V I G A SK+ A+Q A E+LK Sbjct: 179 GPDHNKEFLIGVFIQGKEYAHASGKSKKEAQQNCAKIALEILK 221 >gi|261253900|ref|ZP_05946473.1| ribonuclease III [Vibrio orientalis CIP 102891] gi|260937291|gb|EEX93280.1| ribonuclease III [Vibrio orientalis CIP 102891] Length = 225 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 111/204 (54%), Gaps = 6/204 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK++GY F + L+ ALTH S + + E RLEFLGD IL +I+ L++ F E Sbjct: 8 LEKKLGYQFNDAELISLALTHRSANGKHNE---RLEFLGDSILSFVIADDLYHRFPKVNE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++ RE +L +++ K SI AD VE++I A+YL Sbjct: 65 GDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVEAIIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D IEV + ++K R A+K G ++D KT LQE+ + P Y VT G H+ Sbjct: 125 DSDIEVVRGIILSWYKTRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVTNIKGEAHN 184 Query: 187 PRFTVVVEISGLA-PAQGMDCSKR 209 FTV E++G+ P G S+R Sbjct: 185 QEFTVSCEVAGIGQPVIGKGTSRR 208 >gi|306819680|ref|ZP_07453341.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552246|gb|EFM40176.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 233 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 120/219 (54%), Gaps = 6/219 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E IGY F N++ L+ ALTHSS H + ERLEFLGD +LGL++S +F + S Sbjct: 12 VENTIGYKFKNKNYLQIALTHSSYVNEHKLTKDNERLEFLGDSVLGLIVSNYIFAYKSSL 71 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 KEGEL+ +++V ++ +A +L + +I++ + + SI AD VE++IAA+ Sbjct: 72 KEGELTKIRSTIVCEKSLMHIAEKLKIGQYIKLGKGEKISGGAKRASILADAVEAMIAAI 131 Query: 127 YLDGGIEVAGTFVDKYWKQRALKS---GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD + +V W +K+ K D K++LQE G T +Y++ GP Sbjct: 132 YLDSDFDNVSKYVLD-WLGDTIKNALDNKKNDDYKSKLQEEVQKVRGRTLKYELIAMKGP 190 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 DH+ FT+ V G SK+ AEQ+AA + L++ Sbjct: 191 DHERTFTIGVYCDNKLIGTGKGHSKKEAEQLAAKDALEK 229 >gi|315179118|gb|ADT86032.1| ribonuclease III [Vibrio furnissii NCTC 11218] Length = 202 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/200 (38%), Positives = 111/200 (55%), Gaps = 6/200 (3%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 ALTH S + + E RLEFLGD IL +I+ L++ F EG++S +LV T + Sbjct: 2 ALTHRSANGKHNE---RLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGNTLA 58 Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 ++ RE DL ++++ K SI AD VE++I A+YLD IEVA V +++ Sbjct: 59 ELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEVARATVLSWYQS 118 Query: 146 R--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQ 202 R A+K G ++D KT LQE+ + P Y VT G H+ FTV +I+G+ AP Sbjct: 119 RLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHNQEFTVACDIAGIGAPVI 178 Query: 203 GMDCSKRAAEQVAAAEVLKR 222 G S+R AEQ AA L++ Sbjct: 179 GKGTSRRKAEQAAAETALEQ 198 >gi|242240203|ref|YP_002988384.1| ribonuclease III [Dickeya dadantii Ech703] gi|242132260|gb|ACS86562.1| ribonuclease III [Dickeya dadantii Ech703] Length = 226 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 122/225 (54%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+K++GY F LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQKKLGYTFQQYDLLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + K+++ R A+ G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQAVERLILKWYQSRLDAISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SG + P G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRKAEQAAAEQALKK 222 >gi|170754285|ref|YP_001781997.1| ribonuclease III [Clostridium botulinum B1 str. Okra] gi|169119497|gb|ACA43333.1| ribonuclease III [Clostridium botulinum B1 str. Okra] Length = 234 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 6/221 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L+ ++ F N LL+ ALTHSS ++ + + YERLEFLGD +L L+IS L+ ++ Sbjct: 11 LQYKLKVYFKNEKLLDVALTHSSYANGKRNIKYYERLEFLGDSVLQLIISEHLYQKYEDK 70 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 KEGEL+ + +V + ++A+ DL ++++S SI AD VES+IAA+ Sbjct: 71 KEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESIIAAI 130 Query: 127 YLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD G++ A FV K +K ++A+K + D KT LQE +T Y++ + GP Sbjct: 131 YLDKGLDHAREFVMKNFKEIIEKAMKD-EIILDYKTTLQEIVQQNNDLTINYELLKQEGP 189 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H RF V I G+ SK+ AEQ AA E LK G Sbjct: 190 PHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 230 >gi|309789990|ref|ZP_07684566.1| ribonuclease III [Oscillochloris trichoides DG6] gi|308228010|gb|EFO81662.1| ribonuclease III [Oscillochloris trichoides DG6] Length = 235 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 8/222 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY------QESYERLEFLGDRILGLLISTLLFNH 62 L++++G F + L +A H S H + +ES ERLEFLGD +L L + L+ + Sbjct: 4 LQRQLGIRFNDEELFTRAFVHRSFIHEHPERNRPRESNERLEFLGDAVLNFLSAAWLYAN 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EGEL+ +LV T + AR LDL I++S + ++ ADV E+L Sbjct: 64 FPDRTEGELTHLRAALVKTNTLAGFARSLDLGRHIKISRGEDTPIARNRPALLADVFEAL 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A+YLD G++ TF+ +++ + + SG D +T LQE A ++F TP Y++ Sbjct: 124 LGAIYLDQGLDAVRTFITPFFEHQIVVVLSGSDEVDYRTRLQEQAQSRFNRTPTYRMVDV 183 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGPDH FT+ V I + G+ SK+AA Q AA E L R Sbjct: 184 SGPDHQREFTMEVVIDEVRYGVGVGTSKQAAAQAAAREALNR 225 >gi|188527489|ref|YP_001910176.1| ribonuclease III [Helicobacter pylori Shi470] gi|238691923|sp|B2UTG4|RNC_HELPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|188143729|gb|ACD48146.1| ribonuclease III [Helicobacter pylori Shi470] Length = 238 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 17 YATLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 74 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++ +SS SI + E+L+A Sbjct: 75 YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLHISSSEEISNGREKPSILSSAFEALMAG 134 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 135 VYLEAGLAKVQKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 192 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 193 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 233 >gi|300717987|ref|YP_003742790.1| ribonuclease III [Erwinia billingiae Eb661] gi|299063823|emb|CAX60943.1| Ribonuclease III [Erwinia billingiae Eb661] Length = 226 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 124/228 (54%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVITRLQRKLGYTFTHQELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGYRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQNVEKLILEWYASRLEQISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225 G HD FT+ ++SG+A P G S+R AEQ AA + L + G+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGTGSSRRKAEQAAAEQALIKLGL 225 >gi|78485079|ref|YP_391004.1| ribonuclease III [Thiomicrospira crunogena XCL-2] gi|78363365|gb|ABB41330.1| RNAse III [Thiomicrospira crunogena XCL-2] Length = 233 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 6/219 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + L K +GY + N L++ALTH S+ ++ ERLEFLGD ++ +I+ LF+ F Sbjct: 9 KLNRLSKSLGYQYKNIEFLQRALTHRSMG---AKNNERLEFLGDSLVNFMIADALFHQFH 65 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS LV ET +++ +E L+ ++ + K SI AD VE++IA Sbjct: 66 KISEGDLSRIRAFLVKGETLAKIGKEYQLSDYLMLGPGELKSGGYRRESIIADTVEAIIA 125 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ++Y DGG++ FV + ++ R L K +D KT LQE+ + PEY V +G Sbjct: 126 SVYEDGGLDACRAFVMRLYENRLKELDPSKIGKDPKTRLQEFLQSNREQLPEYSVMTVNG 185 Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220 P H FTV ++ L + ++R AEQVAA E L Sbjct: 186 PAHAQEFTVSCYVAKLNRKFEATATNRRKAEQVAAQEAL 224 >gi|308184450|ref|YP_003928583.1| ribonuclease III [Helicobacter pylori SJM180] gi|308060370|gb|ADO02266.1| ribonuclease III [Helicobacter pylori SJM180] Length = 239 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 116/220 (52%), Gaps = 6/220 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++ VSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAISLQDYLHVSSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YL+ G+ + K RA K D KT LQE A+F V P Y++ G Sbjct: 136 VYLEAGLAKVRKIIQKLL-NRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKG 194 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 PDH F + + I A SK+ AEQ A + L++ Sbjct: 195 PDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 234 >gi|296120504|ref|YP_003628282.1| ribonuclease III [Planctomyces limnophilus DSM 3776] gi|296012844|gb|ADG66083.1| ribonuclease III [Planctomyces limnophilus DSM 3776] Length = 263 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/216 (36%), Positives = 117/216 (54%), Gaps = 9/216 (4%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+GY F + LL +AL+H+S + + ES ERLEFLGD ILG + LLF + + EG Sbjct: 14 EARLGYHFRSPELLMQALSHASAAKTRLESNERLEFLGDAILGAAVCDLLFRKYPKSTEG 73 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC---SFMTSIQADVVESLIAAL 126 EL+ + +VS C +A+EL L F+ + K +C + SI + ES+IAA+ Sbjct: 74 ELTRIKSFVVSRHVCGLLAKELHLDQFVIIG----KGLCGTPNVPVSILSATFESVIAAV 129 Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LDGG + A F+ + + + ++ R+ K+ LQ++A G TP Y + GPD Sbjct: 130 FLDGGFDAAKEFIIRLIEPHVEQMVGAEYGRNYKSVLQQYAQKTLGETPRYDLLKEYGPD 189 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H F V + + A +K+ AEQ AAA L Sbjct: 190 HLKYFKVSAALGEVVYAAAWGINKKEAEQKAAANAL 225 >gi|224532223|ref|ZP_03672855.1| ribonuclease III [Borrelia valaisiana VS116] gi|224511688|gb|EEF82094.1| ribonuclease III [Borrelia valaisiana VS116] Length = 245 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 9/212 (4%) Query: 17 FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F N LL AL+HSS S+ + + ERLEFLGD +L L+I+ L+ + + EGELS Sbjct: 29 FNNFDLLNTALSHSSYSNELDQKSGNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSK 88 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + +VS ++ S +ARE+DL S+I + + I AD +E+ + A+YLD G Sbjct: 89 ARSYIVSEDSLSNIAREIDLGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFS 148 Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 VA FV D Y + G F +D K+ LQE+ K+ ++P YK+ GPDHD F Sbjct: 149 VATEFVVGLFDMYIR-LMFNRGDF-KDYKSLLQEYIQKKYKISPSYKLDKEIGPDHDKVF 206 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V + + + G SK+ AE AA LK Sbjct: 207 CVELYVGEKFISNGKGKSKKEAEMRAAEVALK 238 >gi|296104242|ref|YP_003614388.1| ribonuclease III [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058701|gb|ADF63439.1| ribonuclease III [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 239 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 14 MNPIVINRLQRKLGYTFHHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 70 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 71 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 130 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 131 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 190 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 G HD FT+ ++SGL+ P G S+R AEQ AA + LK Sbjct: 191 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALK 234 >gi|170761820|ref|YP_001787766.1| ribonuclease III [Clostridium botulinum A3 str. Loch Maree] gi|169408809|gb|ACA57220.1| ribonuclease III [Clostridium botulinum A3 str. Loch Maree] Length = 234 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 6/221 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L+ ++ F N LL+ ALTHSS ++ + + YERLEFLGD +L L+IS L+ ++ Sbjct: 11 LQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDK 70 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 KEGEL+ + +V + ++A+ DL ++++S SI AD VES+IAA+ Sbjct: 71 KEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESIIAAI 130 Query: 127 YLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD G++ A FV K +K ++A+K + D KT LQE +T Y++ + GP Sbjct: 131 YLDKGLDHAREFVMKNFKEIIEKAMKD-EIILDYKTTLQEIVQQNNDLTINYELLKQEGP 189 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H RF V I G+ SK+ AEQ AA E LK G Sbjct: 190 PHRRRFFTNVTIDNEIRGTGIGYSKKEAEQNAAREALKNLG 230 >gi|92113755|ref|YP_573683.1| ribonuclease III [Chromohalobacter salexigens DSM 3043] gi|91796845|gb|ABE58984.1| RNAse III [Chromohalobacter salexigens DSM 3043] Length = 226 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/216 (38%), Positives = 117/216 (54%), Gaps = 6/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +RIGY F + S LE ALTH S ++ ERLEFLGD I+ +I LF F A+E Sbjct: 4 LSRRIGYQFRDTSRLELALTHRSYGG---KNNERLEFLGDSIVNFVIGEALFQRFPQARE 60 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS LV +T +++ARE +L +R+ S K SI AD VE+LI A+YL Sbjct: 61 GQLSRLRARLVKGQTLAELAREFELGECLRLGSGEMKSGGYRRDSILADGVEALIGAIYL 120 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G++VA V ++ R A+ ++D KT LQE+ ++ P Y+V G H Sbjct: 121 DAGMDVAKARVLSWYATRLEAIDLQDNQKDPKTRLQEFLQSRQAALPRYEVVSVEGEAHA 180 Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221 FT+ + L G+ S+R AEQ AA + L+ Sbjct: 181 QVFTIECHVEMLEDHTLGVGSSRRHAEQQAAEKALE 216 >gi|57238646|ref|YP_179777.1| ribonuclease III [Campylobacter jejuni RM1221] gi|81353160|sp|Q5HSF8|RNC_CAMJR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|57167450|gb|AAW36229.1| ribonuclease III [Campylobacter jejuni RM1221] gi|315059085|gb|ADT73414.1| Ribonuclease III [Campylobacter jejuni subsp. jejuni S3] Length = 224 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 123/220 (55%), Gaps = 8/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ + Y F +++LL ALTH S SY ERLEFLGD +L L++ LF+ F E Sbjct: 7 LERSLTYEFKDKNLLIHALTHKSFKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I A++L Sbjct: 65 GDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGREKPSILSDALEAIIGAIHL 124 Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G E T ++K + Q + + +D KT+LQE K G TP+Y+ GPD Sbjct: 125 EAGFEFTKTIALRLIEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 182 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 183 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222 >gi|15803093|ref|NP_289124.1| ribonuclease III [Escherichia coli O157:H7 EDL933] gi|15832687|ref|NP_311460.1| ribonuclease III [Escherichia coli O157:H7 str. Sakai] gi|16130492|ref|NP_417062.1| RNase III [Escherichia coli str. K-12 substr. MG1655] gi|24113909|ref|NP_708419.1| ribonuclease III [Shigella flexneri 2a str. 301] gi|26248932|ref|NP_754972.1| ribonuclease III [Escherichia coli CFT073] gi|30063969|ref|NP_838140.1| ribonuclease III [Shigella flexneri 2a str. 2457T] gi|74313129|ref|YP_311548.1| ribonuclease III [Shigella sonnei Ss046] gi|82545019|ref|YP_408966.1| ribonuclease III [Shigella boydii Sb227] gi|82777993|ref|YP_404342.1| ribonuclease III [Shigella dysenteriae Sd197] gi|89109373|ref|AP_003153.1| RNase III [Escherichia coli str. K-12 substr. W3110] gi|91211893|ref|YP_541879.1| ribonuclease III [Escherichia coli UTI89] gi|110642729|ref|YP_670459.1| ribonuclease III [Escherichia coli 536] gi|110806512|ref|YP_690032.1| ribonuclease III [Shigella flexneri 5 str. 8401] gi|117624788|ref|YP_853701.1| ribonuclease III [Escherichia coli APEC O1] gi|157157389|ref|YP_001463890.1| ribonuclease III [Escherichia coli E24377A] gi|157162046|ref|YP_001459364.1| ribonuclease III [Escherichia coli HS] gi|168748363|ref|ZP_02773385.1| ribonuclease III [Escherichia coli O157:H7 str. EC4113] gi|168761188|ref|ZP_02786195.1| ribonuclease III [Escherichia coli O157:H7 str. EC4501] gi|168778544|ref|ZP_02803551.1| ribonuclease III [Escherichia coli O157:H7 str. EC4076] gi|168787927|ref|ZP_02812934.1| ribonuclease III [Escherichia coli O157:H7 str. EC869] gi|170019150|ref|YP_001724104.1| ribonuclease III [Escherichia coli ATCC 8739] gi|170082176|ref|YP_001731496.1| RNase III [Escherichia coli str. K-12 substr. DH10B] gi|170680897|ref|YP_001744756.1| ribonuclease III [Escherichia coli SMS-3-5] gi|170767161|ref|ZP_02901614.1| ribonuclease III [Escherichia albertii TW07627] gi|187732795|ref|YP_001881346.1| ribonuclease III [Shigella boydii CDC 3083-94] gi|187775820|ref|ZP_02992726.1| ribonuclease III [Escherichia coli O157:H7 str. EC4196] gi|188492722|ref|ZP_02999992.1| ribonuclease III [Escherichia coli 53638] gi|189402493|ref|ZP_03006738.1| ribonuclease III [Escherichia coli O157:H7 str. EC4401] gi|189403151|ref|ZP_03006973.1| ribonuclease III [Escherichia coli O157:H7 str. EC4486] gi|189405744|ref|ZP_02823956.2| ribonuclease III [Escherichia coli O157:H7 str. EC508] gi|191167987|ref|ZP_03029789.1| ribonuclease III [Escherichia coli B7A] gi|191174016|ref|ZP_03035533.1| ribonuclease III [Escherichia coli F11] gi|193064102|ref|ZP_03045187.1| ribonuclease III [Escherichia coli E22] gi|193068346|ref|ZP_03049309.1| ribonuclease III [Escherichia coli E110019] gi|194429263|ref|ZP_03061790.1| ribonuclease III [Escherichia coli B171] gi|194432095|ref|ZP_03064384.1| ribonuclease III [Shigella dysenteriae 1012] gi|194437570|ref|ZP_03069666.1| ribonuclease III [Escherichia coli 101-1] gi|195936714|ref|ZP_03082096.1| ribonuclease III [Escherichia coli O157:H7 str. EC4024] gi|208807620|ref|ZP_03249957.1| ribonuclease III [Escherichia coli O157:H7 str. EC4206] gi|208811958|ref|ZP_03253287.1| ribonuclease III [Escherichia coli O157:H7 str. EC4045] gi|208820348|ref|ZP_03260668.1| ribonuclease III [Escherichia coli O157:H7 str. EC4042] gi|209400787|ref|YP_002272042.1| ribonuclease III [Escherichia coli O157:H7 str. EC4115] gi|209920046|ref|YP_002294130.1| ribonuclease III [Escherichia coli SE11] gi|215487911|ref|YP_002330342.1| ribonuclease III [Escherichia coli O127:H6 str. E2348/69] gi|217327524|ref|ZP_03443607.1| ribonuclease III [Escherichia coli O157:H7 str. TW14588] gi|218547905|ref|YP_002381696.1| ribonuclease III [Escherichia fergusonii ATCC 35469] gi|218555148|ref|YP_002388061.1| ribonuclease III [Escherichia coli IAI1] gi|218559488|ref|YP_002392401.1| ribonuclease III [Escherichia coli S88] gi|218690683|ref|YP_002398895.1| ribonuclease III [Escherichia coli ED1a] gi|218696195|ref|YP_002403862.1| ribonuclease III [Escherichia coli 55989] gi|218701081|ref|YP_002408710.1| ribonuclease III [Escherichia coli IAI39] gi|218706071|ref|YP_002413590.1| ribonuclease III [Escherichia coli UMN026] gi|237705077|ref|ZP_04535558.1| ribonuclease III [Escherichia sp. 3_2_53FAA] gi|238901732|ref|YP_002927528.1| RNase III [Escherichia coli BW2952] gi|253772534|ref|YP_003035365.1| ribonuclease III [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162542|ref|YP_003045650.1| ribonuclease III [Escherichia coli B str. REL606] gi|254794517|ref|YP_003079354.1| ribonuclease III [Escherichia coli O157:H7 str. TW14359] gi|256017284|ref|ZP_05431149.1| ribonuclease III [Shigella sp. D9] gi|256021747|ref|ZP_05435612.1| ribonuclease III [Escherichia sp. 4_1_40B] gi|260845252|ref|YP_003223030.1| RNase III [Escherichia coli O103:H2 str. 12009] gi|260856661|ref|YP_003230552.1| RNase III [Escherichia coli O26:H11 str. 11368] gi|260869254|ref|YP_003235656.1| RNase III [Escherichia coli O111:H- str. 11128] gi|261222997|ref|ZP_05937278.1| RNase III [Escherichia coli O157:H7 str. FRIK2000] gi|261259452|ref|ZP_05951985.1| RNase III [Escherichia coli O157:H7 str. FRIK966] gi|291283842|ref|YP_003500660.1| Ribonuclease 3 [Escherichia coli O55:H7 str. CB9615] gi|297516306|ref|ZP_06934692.1| ribonuclease III [Escherichia coli OP50] gi|307139203|ref|ZP_07498559.1| ribonuclease III [Escherichia coli H736] gi|307313862|ref|ZP_07593478.1| ribonuclease III [Escherichia coli W] gi|309784618|ref|ZP_07679253.1| ribonuclease III [Shigella dysenteriae 1617] gi|312965483|ref|ZP_07779715.1| ribonuclease III [Escherichia coli 2362-75] gi|312973187|ref|ZP_07787359.1| ribonuclease III [Escherichia coli 1827-70] gi|331643191|ref|ZP_08344326.1| ribonuclease III [Escherichia coli H736] gi|331648313|ref|ZP_08349402.1| ribonuclease III [Escherichia coli M605] gi|331654029|ref|ZP_08355030.1| ribonuclease III [Escherichia coli M718] gi|331658711|ref|ZP_08359655.1| ribonuclease III [Escherichia coli TA206] gi|331664135|ref|ZP_08365045.1| ribonuclease III [Escherichia coli TA143] gi|331669317|ref|ZP_08370165.1| ribonuclease III [Escherichia coli TA271] gi|331674016|ref|ZP_08374779.1| ribonuclease III [Escherichia coli TA280] gi|331678563|ref|ZP_08379238.1| ribonuclease III [Escherichia coli H591] gi|331684217|ref|ZP_08384813.1| ribonuclease III [Escherichia coli H299] gi|332278275|ref|ZP_08390688.1| ribonuclease III [Shigella sp. D9] gi|67472282|sp|P0A7Y0|RNC_ECOLI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|67472283|sp|P0A7Y1|RNC_ECOL6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|67472284|sp|P0A7Y2|RNC_ECO57 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|67472285|sp|P0A7Y3|RNC_SHIFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101643|sp|Q31XS0|RNC_SHIBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101644|sp|Q32CV4|RNC_SHIDS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101645|sp|Q3YYU9|RNC_SHISS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122422869|sp|Q1R8G6|RNC_ECOUT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122958122|sp|Q0TES1|RNC_ECOL5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|123048003|sp|Q0T1T8|RNC_SHIF8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043309|sp|A7ZQ11|RNC_ECO24 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043310|sp|A8A377|RNC_ECOHS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043311|sp|A1AE97|RNC_ECOK1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043312|sp|B1IVR0|RNC_ECOLC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735371|sp|B7MIQ2|RNC_ECO45 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735372|sp|B7NRM0|RNC_ECO7I RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735373|sp|B7M8I0|RNC_ECO8A RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735374|sp|B7N6F5|RNC_ECOLU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735375|sp|B1LP80|RNC_ECOSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735376|sp|B7LUZ7|RNC_ESCF3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741369|sp|B5Z141|RNC_ECO5E RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741370|sp|B6I5E1|RNC_ECOSE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|229564359|sp|B1XB41|RNC_ECODH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238691723|sp|B2TXY0|RNC_SHIB3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807247|sp|B7UH07|RNC_ECO27 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807248|sp|B7LDG0|RNC_ECO55 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807249|sp|B7MYJ8|RNC_ECO81 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|259491899|sp|C4ZYJ0|RNC_ECOBW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|12516984|gb|AAG57682.1|AE005487_6 RNase III, ds RNA [Escherichia coli O157:H7 str. EDL933] gi|26109338|gb|AAN81540.1|AE016764_222 Ribonuclease III [Escherichia coli CFT073] gi|42769|emb|CAA26692.1| unnamed protein product [Escherichia coli] gi|987642|dbj|BAA10914.1| ribonuclease III [Escherichia coli K-12] gi|1033156|gb|AAA79829.1| RNase III [Escherichia coli str. K-12 substr. MG1655] gi|1788920|gb|AAC75620.1| RNase III [Escherichia coli str. K-12 substr. MG1655] gi|13362904|dbj|BAB36856.1| RNase III [Escherichia coli O157:H7 str. Sakai] gi|24053010|gb|AAN44126.1| RNase III [Shigella flexneri 2a str. 301] gi|30042225|gb|AAP17950.1| RNase III [Shigella flexneri 2a str. 2457T] gi|73856606|gb|AAZ89313.1| RNase III [Shigella sonnei Ss046] gi|81242141|gb|ABB62851.1| RNase III, ds RNA [Shigella dysenteriae Sd197] gi|81246430|gb|ABB67138.1| RNase III [Shigella boydii Sb227] gi|85675458|dbj|BAE76743.1| RNase III [Escherichia coli str. K12 substr. W3110] gi|91073467|gb|ABE08348.1| RNase III, ds RNA [Escherichia coli UTI89] gi|110344321|gb|ABG70558.1| ribonuclease III [Escherichia coli 536] gi|110616060|gb|ABF04727.1| RNase III, ds RNA [Shigella flexneri 5 str. 8401] gi|115513912|gb|ABJ01987.1| RNase III [Escherichia coli APEC O1] gi|157067726|gb|ABV06981.1| ribonuclease III [Escherichia coli HS] gi|157079419|gb|ABV19127.1| ribonuclease III [Escherichia coli E24377A] gi|169754078|gb|ACA76777.1| Ribonuclease III [Escherichia coli ATCC 8739] gi|169890011|gb|ACB03718.1| RNase III [Escherichia coli str. K-12 substr. DH10B] gi|170123495|gb|EDS92426.1| ribonuclease III [Escherichia albertii TW07627] gi|170518615|gb|ACB16793.1| ribonuclease III [Escherichia coli SMS-3-5] gi|187429787|gb|ACD09061.1| ribonuclease III [Shigella boydii CDC 3083-94] gi|187770609|gb|EDU34453.1| ribonuclease III [Escherichia coli O157:H7 str. EC4196] gi|188017132|gb|EDU55254.1| ribonuclease III [Escherichia coli O157:H7 str. EC4113] gi|188487921|gb|EDU63024.1| ribonuclease III [Escherichia coli 53638] gi|189003491|gb|EDU72477.1| ribonuclease III [Escherichia coli O157:H7 str. EC4076] gi|189355317|gb|EDU73736.1| ribonuclease III [Escherichia coli O157:H7 str. EC4401] gi|189362280|gb|EDU80699.1| ribonuclease III [Escherichia coli O157:H7 str. EC4486] gi|189368381|gb|EDU86797.1| ribonuclease III [Escherichia coli O157:H7 str. EC4501] gi|189372250|gb|EDU90666.1| ribonuclease III [Escherichia coli O157:H7 str. EC869] gi|189378654|gb|EDU97070.1| ribonuclease III [Escherichia coli O157:H7 str. EC508] gi|190901994|gb|EDV61741.1| ribonuclease III [Escherichia coli B7A] gi|190905707|gb|EDV65329.1| ribonuclease III [Escherichia coli F11] gi|192929337|gb|EDV82946.1| ribonuclease III [Escherichia coli E22] gi|192958298|gb|EDV88738.1| ribonuclease III [Escherichia coli E110019] gi|194412671|gb|EDX28966.1| ribonuclease III [Escherichia coli B171] gi|194419624|gb|EDX35704.1| ribonuclease III [Shigella dysenteriae 1012] gi|194423376|gb|EDX39367.1| ribonuclease III [Escherichia coli 101-1] gi|208727421|gb|EDZ77022.1| ribonuclease III [Escherichia coli O157:H7 str. EC4206] gi|208733235|gb|EDZ81922.1| ribonuclease III [Escherichia coli O157:H7 str. EC4045] gi|208740471|gb|EDZ88153.1| ribonuclease III [Escherichia coli O157:H7 str. EC4042] gi|209162187|gb|ACI39620.1| ribonuclease III [Escherichia coli O157:H7 str. EC4115] gi|209762878|gb|ACI79751.1| RNase III [Escherichia coli] gi|209762880|gb|ACI79752.1| RNase III [Escherichia coli] gi|209762882|gb|ACI79753.1| RNase III [Escherichia coli] gi|209762884|gb|ACI79754.1| RNase III [Escherichia coli] gi|209762886|gb|ACI79755.1| RNase III [Escherichia coli] gi|209913305|dbj|BAG78379.1| ribonuclease III [Escherichia coli SE11] gi|215265983|emb|CAS10392.1| RNase III [Escherichia coli O127:H6 str. E2348/69] gi|217319891|gb|EEC28316.1| ribonuclease III [Escherichia coli O157:H7 str. TW14588] gi|218352927|emb|CAU98726.1| RNase III [Escherichia coli 55989] gi|218355446|emb|CAQ88055.1| RNase III [Escherichia fergusonii ATCC 35469] gi|218361916|emb|CAQ99516.1| RNase III [Escherichia coli IAI1] gi|218366257|emb|CAR04004.1| RNase III [Escherichia coli S88] gi|218371067|emb|CAR18894.1| RNase III [Escherichia coli IAI39] gi|218428247|emb|CAR09164.2| RNase III [Escherichia coli ED1a] gi|218433168|emb|CAR14064.1| RNase III [Escherichia coli UMN026] gi|222034272|emb|CAP77013.1| ribonuclease 3 [Escherichia coli LF82] gi|226901443|gb|EEH87702.1| ribonuclease III [Escherichia sp. 3_2_53FAA] gi|238863504|gb|ACR65502.1| RNase III [Escherichia coli BW2952] gi|242378168|emb|CAQ32942.1| RNase III [Escherichia coli BL21(DE3)] gi|253323578|gb|ACT28180.1| ribonuclease III [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974443|gb|ACT40114.1| ribonuclease III [Escherichia coli B str. REL606] gi|253978610|gb|ACT44280.1| ribonuclease III [Escherichia coli BL21(DE3)] gi|254593917|gb|ACT73278.1| RNase III [Escherichia coli O157:H7 str. TW14359] gi|257755310|dbj|BAI26812.1| RNase III [Escherichia coli O26:H11 str. 11368] gi|257760399|dbj|BAI31896.1| RNase III [Escherichia coli O103:H2 str. 12009] gi|257765610|dbj|BAI37105.1| RNase III [Escherichia coli O111:H- str. 11128] gi|260448353|gb|ACX38775.1| Ribonuclease III [Escherichia coli DH1] gi|281179616|dbj|BAI55946.1| ribonuclease III [Escherichia coli SE15] gi|281601980|gb|ADA74964.1| Ribonuclease 3 [Shigella flexneri 2002017] gi|284922517|emb|CBG35604.1| Ribonuclease III [Escherichia coli 042] gi|290763715|gb|ADD57676.1| Ribonuclease 3 [Escherichia coli O55:H7 str. CB9615] gi|294490667|gb|ADE89423.1| ribonuclease III [Escherichia coli IHE3034] gi|306906363|gb|EFN36878.1| ribonuclease III [Escherichia coli W] gi|307554586|gb|ADN47361.1| ribonuclease III [Escherichia coli ABU 83972] gi|307625885|gb|ADN70189.1| ribonuclease III [Escherichia coli UM146] gi|308927515|gb|EFP72987.1| ribonuclease III [Shigella dysenteriae 1617] gi|309702953|emb|CBJ02284.1| Ribonuclease III [Escherichia coli ETEC H10407] gi|310331782|gb|EFP99017.1| ribonuclease III [Escherichia coli 1827-70] gi|312289903|gb|EFR17791.1| ribonuclease III [Escherichia coli 2362-75] gi|312947138|gb|ADR27965.1| ribonuclease III [Escherichia coli O83:H1 str. NRG 857C] gi|315061886|gb|ADT76213.1| RNase III [Escherichia coli W] gi|315137191|dbj|BAJ44350.1| RNase III [Escherichia coli DH1] gi|315615829|gb|EFU96461.1| ribonuclease III [Escherichia coli 3431] gi|320182108|gb|EFW57012.1| Ribonuclease III [Shigella boydii ATCC 9905] gi|320186366|gb|EFW61100.1| Ribonuclease III [Shigella flexneri CDC 796-83] gi|320188908|gb|EFW63567.1| Ribonuclease III [Escherichia coli O157:H7 str. EC1212] gi|320196403|gb|EFW71027.1| Ribonuclease III [Escherichia coli WV_060327] gi|320200131|gb|EFW74720.1| Ribonuclease III [Escherichia coli EC4100B] gi|320640816|gb|EFX10310.1| ribonuclease III [Escherichia coli O157:H7 str. G5101] gi|320646162|gb|EFX15102.1| ribonuclease III [Escherichia coli O157:H- str. 493-89] gi|320651457|gb|EFX19853.1| ribonuclease III [Escherichia coli O157:H- str. H 2687] gi|320657058|gb|EFX24877.1| ribonuclease III [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320667543|gb|EFX34463.1| ribonuclease III [Escherichia coli O157:H7 str. LSU-61] gi|323159224|gb|EFZ45214.1| ribonuclease III [Escherichia coli E128010] gi|323167799|gb|EFZ53494.1| ribonuclease III [Shigella sonnei 53G] gi|323184553|gb|EFZ69927.1| ribonuclease III [Escherichia coli 1357] gi|323188318|gb|EFZ73610.1| ribonuclease III [Escherichia coli RN587/1] gi|323377533|gb|ADX49801.1| ribonuclease III [Escherichia coli KO11] gi|323936307|gb|EGB32598.1| ribonuclease III [Escherichia coli E1520] gi|323941170|gb|EGB37355.1| ribonuclease III [Escherichia coli E482] gi|323944624|gb|EGB40692.1| ribonuclease III [Escherichia coli H120] gi|323949221|gb|EGB45112.1| ribonuclease III [Escherichia coli H252] gi|323955803|gb|EGB51561.1| ribonuclease III [Escherichia coli H263] gi|323961182|gb|EGB56795.1| ribonuclease III [Escherichia coli H489] gi|323968015|gb|EGB63427.1| ribonuclease III [Escherichia coli M863] gi|323971107|gb|EGB66354.1| ribonuclease III [Escherichia coli TA007] gi|323978403|gb|EGB73488.1| ribonuclease III [Escherichia coli TW10509] gi|324113094|gb|EGC07070.1| ribonuclease III [Escherichia fergusonii B253] gi|324118223|gb|EGC12119.1| ribonuclease III [Escherichia coli E1167] gi|325496353|gb|EGC94212.1| ribonuclease III [Escherichia fergusonii ECD227] gi|326340373|gb|EGD64177.1| Ribonuclease III [Escherichia coli O157:H7 str. 1125] gi|327252277|gb|EGE63949.1| ribonuclease III [Escherichia coli STEC_7v] gi|330912336|gb|EGH40846.1| ribonuclease 3 [Escherichia coli AA86] gi|331039989|gb|EGI12209.1| ribonuclease III [Escherichia coli H736] gi|331042862|gb|EGI15003.1| ribonuclease III [Escherichia coli M605] gi|331048878|gb|EGI20954.1| ribonuclease III [Escherichia coli M718] gi|331054376|gb|EGI26403.1| ribonuclease III [Escherichia coli TA206] gi|331059934|gb|EGI31911.1| ribonuclease III [Escherichia coli TA143] gi|331064511|gb|EGI36422.1| ribonuclease III [Escherichia coli TA271] gi|331069289|gb|EGI40681.1| ribonuclease III [Escherichia coli TA280] gi|331075023|gb|EGI46343.1| ribonuclease III [Escherichia coli H591] gi|331079169|gb|EGI50371.1| ribonuclease III [Escherichia coli H299] gi|332088079|gb|EGI93204.1| ribonuclease III [Shigella boydii 5216-82] gi|332089189|gb|EGI94296.1| ribonuclease III [Shigella dysenteriae 155-74] gi|332100627|gb|EGJ03973.1| ribonuclease III [Shigella sp. D9] gi|332344442|gb|AEE57776.1| ribonuclease III [Escherichia coli UMNK88] gi|332753976|gb|EGJ84350.1| ribonuclease III [Shigella flexneri 4343-70] gi|332755808|gb|EGJ86166.1| ribonuclease III [Shigella flexneri 2747-71] gi|332761960|gb|EGJ92233.1| ribonuclease III [Shigella flexneri K-671] gi|332766568|gb|EGJ96773.1| ribonuclease III [Shigella flexneri 2930-71] Length = 226 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL+ P G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 222 >gi|152978261|ref|YP_001343890.1| ribonuclease III [Actinobacillus succinogenes 130Z] gi|189043288|sp|A6VLV8|RNC_ACTSZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|150839984|gb|ABR73955.1| Ribonuclease III [Actinobacillus succinogenes 130Z] Length = 224 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/216 (37%), Positives = 119/216 (55%), Gaps = 6/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ +IGY F+N +LL++ALTH S + + E RLEFLGD IL L I L+ F E Sbjct: 7 LQHKIGYEFSNLTLLKQALTHRSAAKVHNE---RLEFLGDAILNLTIGEALYLQFPHCNE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +LV +T +++A + DL +++ + + K SI AD VE++I A+ L Sbjct: 64 GELSRMRATLVREKTLAELAHQFDLGNYMALGAGELKSGGFRRASILADCVEAIIGAMSL 123 Query: 129 DGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D + V ++++ R ++ G+ ++D KT LQE+ K P Y VT G H Sbjct: 124 DSNLPKTMEIVRRWYEVLLRDIQPGENQKDPKTRLQEYLQGKRLALPAYNVTDIQGEAHC 183 Query: 187 PRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 FTV + L G+ S+R AEQVAA ++LK Sbjct: 184 QTFTVECHVENLDRTFVGVAGSRRKAEQVAAEQILK 219 >gi|261839511|gb|ACX99276.1| ribonuclease III [Helicobacter pylori 52] Length = 239 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YITLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS ++VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRAAIVSAHGFTKLAKIIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 194 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 234 >gi|119953483|ref|YP_945692.1| ribonuclease III [Borrelia turicatae 91E135] gi|119862254|gb|AAX18022.1| ribonuclease III [Borrelia turicatae 91E135] Length = 244 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 116/212 (54%), Gaps = 7/212 (3%) Query: 17 FANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F + LL +L+HSS ++ + + Y ERLEFLGD +L L+I+ L+ + EGELS Sbjct: 28 FNDIDLLNMSLSHSSYANEFDQKYANNERLEFLGDSVLNLIITDYLYRFYPEKSEGELSK 87 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + +VS E+ S +AREL+L ++I + + I AD +E+ + ALYLDGG Sbjct: 88 ARSYIVSEESLSSIARELNLGNYILLGRGEENNDGRNKKGILADAIEAFVGALYLDGGFL 147 Query: 134 VAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 FV + ++ + G F +D K+ LQE+ K+ ++P YK+ GPDH+ F Sbjct: 148 KTLDFVIELFEVHIRLMFNRGDF-KDYKSLLQEYVQKKYKISPTYKLAKELGPDHNKVFC 206 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + ++ + G SK+ AE +AA LK Sbjct: 207 VELYVNDKFISNGKGKSKKEAEMIAAEMALKN 238 >gi|15606266|ref|NP_213645.1| RNase III [Aquifex aeolicus VF5] gi|7531189|sp|O67082|RNC_AQUAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|83753752|pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.5-Angstrom Resolution gi|83753753|pdb|1YYK|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.5-Angstrom Resolution gi|83753764|pdb|1YYW|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.8-Angstrom Resolution gi|83753765|pdb|1YYW|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.8-Angstrom Resolution gi|83753766|pdb|1YYW|C Chain C, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.8-Angstrom Resolution gi|83753767|pdb|1YYW|D Chain D, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.8-Angstrom Resolution gi|160877674|pdb|2NUE|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Ds-Rna At 2.9-Angstrom Resolution gi|160877675|pdb|2NUE|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Ds-Rna At 2.9-Angstrom Resolution gi|160877678|pdb|2NUF|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Ds-Rna At 2.5-Angstrom Resolution gi|160877679|pdb|2NUF|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Ds-Rna At 2.5-Angstrom Resolution gi|160877684|pdb|2NUG|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Ds-Rna At 1.7-Angstrom Resolution gi|160877685|pdb|2NUG|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Ds-Rna At 1.7-Angstrom Resolution gi|2983469|gb|AAC07049.1| RNase III [Aquifex aeolicus VF5] Length = 221 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/218 (38%), Positives = 122/218 (55%), Gaps = 14/218 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK++GY F ++SLLEKALTH +S+S +E YE LEFLGD ++ I LL + + +E Sbjct: 7 LEKKLGYTFKDKSLLEKALTH--VSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKRE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS L+S E + +A++L+L FIR+ +I DV E+L AA+Y+ Sbjct: 65 GFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFEALWAAVYI 118 Query: 129 DGGIEVAGT--FVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 D G + T K +K+ A+K G+ ++D KT LQE ++ PEY++ GP Sbjct: 119 DSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGP 178 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H +F V +I G SK+ AEQ AA E++K Sbjct: 179 HHKKKFIVEAKIKEYRTL-GEGKSKKEAEQRAAEELIK 215 >gi|146312695|ref|YP_001177769.1| ribonuclease III [Enterobacter sp. 638] gi|189043313|sp|A4WDD8|RNC_ENT38 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|145319571|gb|ABP61718.1| RNAse III [Enterobacter sp. 638] Length = 226 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQHHELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEQLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 G HD FT+ ++SGL+ P G S+R AEQ AA + LK Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALK 221 >gi|126698844|ref|YP_001087741.1| ribonuclease III [Clostridium difficile 630] gi|254974792|ref|ZP_05271264.1| ribonuclease III [Clostridium difficile QCD-66c26] gi|255092180|ref|ZP_05321658.1| ribonuclease III [Clostridium difficile CIP 107932] gi|255100264|ref|ZP_05329241.1| ribonuclease III [Clostridium difficile QCD-63q42] gi|255306204|ref|ZP_05350376.1| ribonuclease III [Clostridium difficile ATCC 43255] gi|255313919|ref|ZP_05355502.1| ribonuclease III [Clostridium difficile QCD-76w55] gi|255516598|ref|ZP_05384274.1| ribonuclease III [Clostridium difficile QCD-97b34] gi|255649698|ref|ZP_05396600.1| ribonuclease III [Clostridium difficile QCD-37x79] gi|260682854|ref|YP_003214139.1| ribonuclease III [Clostridium difficile CD196] gi|260686452|ref|YP_003217585.1| ribonuclease III [Clostridium difficile R20291] gi|306519814|ref|ZP_07406161.1| ribonuclease III [Clostridium difficile QCD-32g58] gi|115250281|emb|CAJ68103.1| ribonuclease III [Clostridium difficile] gi|260209017|emb|CBA62108.1| putative ribonuclease III [Clostridium difficile CD196] gi|260212468|emb|CBE03371.1| putative ribonuclease III [Clostridium difficile R20291] Length = 236 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 119/222 (53%), Gaps = 5/222 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSA 66 E I Y F N+ + +ALTHSS S+ ++ ERLEFLGD +LG++IS LFN + Sbjct: 14 FENVINYKFKNKEYILEALTHSSYSNENKKYNFNERLEFLGDSVLGIVISDYLFNEEANL 73 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ ++V ++ S+VA +++L + + TSI AD E++IAA+ Sbjct: 74 PEGELTKLRANIVCEDSLSEVANDINLGIHMLLGRGEEATGGRHRTSILADAFEAVIAAI 133 Query: 127 YLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLDGG E A F+ + + S G RD KT LQE Y++ GPD Sbjct: 134 YLDGGFESARQFILHHMENIIYDSRKGNIFRDYKTHLQEVLQGNGENNIWYRLIEEKGPD 193 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 H+ RF + V I+ G SK+ AEQ+AA LK++ +W Sbjct: 194 HNKRFVMEVGINDDVLGIGEGKSKKEAEQLAAKIALKKK-LW 234 >gi|116327694|ref|YP_797414.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|122284510|sp|Q053L4|RNC_LEPBL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116120438|gb|ABJ78481.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 247 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 113/222 (50%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62 + L K+IG F+ A HSS + E ERLEFLGD +LGL+ + LF Sbjct: 21 FKKLSKKIGIKFSKIEYYNTAFIHSSYKNENPEILEDNERLEFLGDSVLGLVAARSLFQK 80 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + A EGELS + +VS + +A +L+L ++ + + I A++ ESL Sbjct: 81 YPKASEGELSRIKSKIVSTPILNSIAEKLNLGEYLLLGKGEKNSQGKGRRKIAANLFESL 140 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A+YLD G EVA F+ ++ + A + RD KT+LQE++ F P Y++ Sbjct: 141 VGAIYLDRGFEVAEKFIVQHLLEFAENPDMEESVRDYKTQLQEYSQKHFKTLPVYRMKGE 200 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGPDH F V V I A G SK+ AEQ AA E+ R Sbjct: 201 SGPDHSKMFQVSVRIRDQWEASGYGASKKIAEQNAAKELYIR 242 >gi|311898536|dbj|BAJ30944.1| putative ribonuclease 3 [Kitasatospora setae KM-6054] Length = 269 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/215 (38%), Positives = 116/215 (53%), Gaps = 6/215 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 Y LE R+GY+ R+LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 28 YDVLEGRLGYSL-ERALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRLH 86 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ ++V++ ++V R LDL +FIR+ +SI AD VE++I Sbjct: 87 PEVAEGTLAKLRAAVVNSRALAEVGRGLDLGAFIRLGKGEEGTGGRDKSSILADTVEAVI 146 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181 A YLD G++ A FV + + +S + D KT LQE A PEY VT S Sbjct: 147 GATYLDQGLDAATEFVHRLFDPLIAESAQLGAGLDWKTSLQELTAAVGLGVPEYVVT-ES 205 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH+ FT ++G G SK+ AEQ AA Sbjct: 206 GPDHEKTFTAAARVAGQDHGSGSGRSKKEAEQKAA 240 >gi|216263528|ref|ZP_03435523.1| ribonuclease III [Borrelia afzelii ACA-1] gi|215980372|gb|EEC21193.1| ribonuclease III [Borrelia afzelii ACA-1] Length = 245 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/212 (36%), Positives = 114/212 (53%), Gaps = 9/212 (4%) Query: 17 FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F N LL AL+HSS S+ + + ERLEFLGD +L L+I+ L+ + + EGELS Sbjct: 29 FNNFDLLNTALSHSSYSNELDQKSDNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSK 88 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + +VS ++ S +ARE+DL S+I + + I AD +E+ + A+YLD G Sbjct: 89 ARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFS 148 Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 +A FV D Y + G F +D K+ LQE+ K+ ++P YK+ GPDHD F Sbjct: 149 IATEFVVGLFDMYIR-LMFNRGDF-KDYKSLLQEYVQKKYKISPNYKLDKEIGPDHDKVF 206 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V + + + G SK+ AE AA LK Sbjct: 207 CVELYVGEKFISNGKGKSKKEAEMRAAEVALK 238 >gi|116331646|ref|YP_801364.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280610|sp|Q04R64|RNC_LEPBJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116125335|gb|ABJ76606.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 247 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 113/222 (50%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62 + L K+IG F+ A HSS + E ERLEFLGD +LGL+ + LF Sbjct: 21 FKKLSKKIGIKFSKIEYYNTAFIHSSYKNENPEILEDNERLEFLGDSVLGLVAARSLFQK 80 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + A EGELS + +VS + +A +L+L ++ + + I A++ ESL Sbjct: 81 YPKASEGELSRIKSKIVSTPILNSIAEKLNLGEYLLLGKGEKNSQGKGRRKIAANLFESL 140 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A+YLD G EVA F+ ++ + A + RD KT+LQE++ F P Y++ Sbjct: 141 VGAIYLDRGFEVAEKFIVQHLLEFAENPDMEESVRDYKTQLQEYSQKHFKTLPVYRMKGE 200 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGPDH F V V I A G SK+ AEQ AA E+ R Sbjct: 201 SGPDHSKTFQVSVRIRDQWEASGYGASKKIAEQNAAKELYIR 242 >gi|52842090|ref|YP_095889.1| ribonuclease III [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81377263|sp|Q5ZUD5|RNC_LEGPH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|52629201|gb|AAU27942.1| ribonuclease III [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 224 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/217 (36%), Positives = 120/217 (55%), Gaps = 6/217 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +R+ Y F N + L++ALTH S ++YER EFLGD IL +I+ LFN F E Sbjct: 8 LCRRLNYHFNNIAYLKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFNRFPLHSE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS + LV E +++ARE+DL ++ + + TSI AD +E+++AA+YL Sbjct: 65 GQLSRLRSFLVKGEMLAEIAREIDLGDYLFLGQGELRSGGFRRTSILADALEAILAAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 DGG+ A + + R +DAKT+LQE+ A PEY +T G +H Sbjct: 125 DGGMIAAKQIILMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKIEGDEHA 184 Query: 187 PRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKR 222 F V I G++ A G ++R AEQ+AA +L++ Sbjct: 185 QIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLEQ 221 >gi|317178975|dbj|BAJ56763.1| ribonuclease III [Helicobacter pylori F30] Length = 232 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 121/221 (54%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 11 YITLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 68 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VS +++A+ + L ++RVSS SI + E+L+A Sbjct: 69 YDEGKLSKLRASIVSTHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 128 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 129 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 186 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 187 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 227 >gi|313673188|ref|YP_004051299.1| rnase iii [Calditerrivibrio nitroreducens DSM 19672] gi|312939944|gb|ADR19136.1| RNAse III [Calditerrivibrio nitroreducens DSM 19672] Length = 229 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/218 (37%), Positives = 115/218 (52%), Gaps = 16/218 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L + + Y F N+ LL +ALTHSS S+ + +YERLEFLGD +L L++S L + Sbjct: 6 LNEILNYNFENKELLIEALTHSSYSYENKLCRNYERLEFLGDAVLQLIVSEYLIFKYKDF 65 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG LS VS E S++A+++DL +FIR+ SI D+ ES++AA+ Sbjct: 66 DEGMLSRYRAYFVSEEFISELAKQIDLGNFIRLGKGELNSGGKDRPSILCDIFESIVAAM 125 Query: 127 YLDGG--------IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 YLDGG I +A +D+ +Q D K+ELQ+ F P+YKV Sbjct: 126 YLDGGYNEARRFIITIASDKIDEVIQQNIFT------DYKSELQKLTQKIFESLPDYKVK 179 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +GP+HD F V + I+ G SK+ AEQ AA Sbjct: 180 DETGPEHDKTFIVDLYINDRYYCSGSGKSKKKAEQDAA 217 >gi|307637352|gb|ADN79802.1| Ribonuclease III [Helicobacter pylori 908] gi|325995944|gb|ADZ51349.1| Ribonuclease III [Helicobacter pylori 2018] gi|325997538|gb|ADZ49746.1| Ribonuclease III [Helicobacter pylori 2017] Length = 239 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 116/220 (52%), Gaps = 6/220 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++ VSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLHVSSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YL+ G+ + K RA K D KT LQE A+F V P Y++ G Sbjct: 136 VYLEAGLAKVRKIIQKLL-NRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKG 194 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 PDH F + + I A SK+ AEQ A + L++ Sbjct: 195 PDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQK 234 >gi|152971423|ref|YP_001336532.1| ribonuclease III [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580271|ref|YP_002237090.1| ribonuclease III [Klebsiella pneumoniae 342] gi|288934052|ref|YP_003438111.1| ribonuclease III [Klebsiella variicola At-22] gi|189043322|sp|A6TCI1|RNC_KLEP7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741374|sp|B5XNH0|RNC_KLEP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|150956272|gb|ABR78302.1| ribonuclease III [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569329|gb|ACI11105.1| ribonuclease III [Klebsiella pneumoniae 342] gi|288888781|gb|ADC57099.1| ribonuclease III [Klebsiella variicola At-22] Length = 226 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFHHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQNVERLILSWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL+ P G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 222 >gi|312881718|ref|ZP_07741495.1| ribonuclease III [Vibrio caribbenthicus ATCC BAA-2122] gi|309370608|gb|EFP98083.1| ribonuclease III [Vibrio caribbenthicus ATCC BAA-2122] Length = 225 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 112/205 (54%), Gaps = 6/205 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 TLEK++GY F + L+ ALTH S + + E RLEFLGD IL +I+ L+ F Sbjct: 7 TLEKKLGYQFDDAELISLALTHRSANSKHNE---RLEFLGDSILSFVIADDLYQRFPQIN 63 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG++S +LV +T +++ RE L ++++ K SI AD VE++I A+Y Sbjct: 64 EGDMSRMRATLVRGKTLAELGREFQLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIY 123 Query: 128 LDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +D IEV + +++ R A++ G ++D KT LQE+ + P Y VT G H Sbjct: 124 MDSNIEVVRGIILAWYQGRLEAIEPGASQKDPKTRLQEFLQGRRKPLPAYTVTNIKGEAH 183 Query: 186 DPRFTVVVEISGL-APAQGMDCSKR 209 + FTV E++G+ P G S+R Sbjct: 184 NQEFTVSCEVAGINQPVVGKGTSRR 208 >gi|269140067|ref|YP_003296768.1| ribonuclease III [Edwardsiella tarda EIB202] gi|267985728|gb|ACY85557.1| ribonuclease III [Edwardsiella tarda EIB202] gi|304559895|gb|ADM42559.1| Ribonuclease III [Edwardsiella tarda FL6-60] Length = 226 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 122/225 (54%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFRQQDLLMQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIERLILDWYHSRLEEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL AP G+ S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSAPVVGVGSSRRKAEQAAAEQALKQ 222 >gi|160871765|ref|ZP_02061897.1| ribonuclease III [Rickettsiella grylli] gi|159120564|gb|EDP45902.1| ribonuclease III [Rickettsiella grylli] Length = 230 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/217 (35%), Positives = 122/217 (56%), Gaps = 5/217 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +L +++ Y F N LLE AL+H S + ++ ERLE+LGD +L +I+ LF A+ Sbjct: 7 SLCEKLNYQFKNPELLEDALSHRSFRGN--KNNERLEYLGDAVLNFVIAAALFRQNIKAR 64 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EGELS +LV ET + +A+ +L ++R+ + K + SI AD +E+++ A+Y Sbjct: 65 EGELSRLRANLVRGETLTDLAQGFELGKYLRLGAGELKTGGAQRKSILADGMEAVVGAIY 124 Query: 128 LDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDGG + T + +++ R ++ +D KT+LQE+ AK P Y + GP H Sbjct: 125 LDGGFQACETCILRWYANRLENIEMIPDLKDPKTQLQEYLQAKKLALPVYTILALEGPAH 184 Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 F V +I GL A G+ S+R AEQ AA ++L+ Sbjct: 185 QQSFKVECQIQGLPHKAIGLGSSRRRAEQKAAEKILE 221 >gi|229828999|ref|ZP_04455068.1| hypothetical protein GCWU000342_01084 [Shuttleworthia satelles DSM 14600] gi|229792162|gb|EEP28276.1| hypothetical protein GCWU000342_01084 [Shuttleworthia satelles DSM 14600] Length = 230 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 +R TLE +IGY F ++SLL +ALTHSS ++ ERLEFLGD +L ++ S L Sbjct: 1 MRNETLEAKIGYQFQDKSLLRQALTHSSFANERHMKAHSDNERLEFLGDAVLEVVSSEFL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + ++ EG L+ SLV T + ARE+ L + +R++ + SI +D + Sbjct: 61 YLNYPDLPEGRLTPLRASLVCEPTLAIAAREIGLGACLRLARGEDQSGGRERDSILSDAL 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++I A++LDGGIE A + +Y ++ K D+KT LQE A + +Y + Sbjct: 121 EAVIGAVFLDGGIEPAKALIIRYILT-DIEHKKLYHDSKTRLQEMVQAMEEASLDYVLVR 179 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDH RF + G +G SK+A+EQ AA + L Sbjct: 180 EEGPDHAKRFVTEARLDGRTIGRGEGGSKKASEQEAAYQGL 220 >gi|255655258|ref|ZP_05400667.1| ribonuclease III [Clostridium difficile QCD-23m63] gi|296451243|ref|ZP_06892983.1| ribonuclease III [Clostridium difficile NAP08] gi|296880405|ref|ZP_06904368.1| ribonuclease III [Clostridium difficile NAP07] gi|296259849|gb|EFH06704.1| ribonuclease III [Clostridium difficile NAP08] gi|296428646|gb|EFH14530.1| ribonuclease III [Clostridium difficile NAP07] Length = 236 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 119/222 (53%), Gaps = 5/222 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSA 66 E I Y F N+ + +ALTHSS S+ ++ ERLEFLGD +LG++IS LFN + Sbjct: 14 FENVINYKFKNKEYILEALTHSSYSNENKKYNFNERLEFLGDSVLGIVISDYLFNEEANL 73 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ ++V ++ S+VA +++L + + TSI AD E++IAA+ Sbjct: 74 PEGELTKLRANIVCEDSLSEVANDINLGVHMLLGRGEEATGGRHRTSILADAFEAVIAAI 133 Query: 127 YLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLDGG E A F+ + + S G RD KT LQE Y++ GPD Sbjct: 134 YLDGGFESARQFILHHMENIIYDSRKGNIFRDYKTHLQEVLQGNGENNIWYRLIEEKGPD 193 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 H+ RF + V I+ G SK+ AEQ+AA LK++ +W Sbjct: 194 HNKRFVMEVGINEDVLGIGEGKSKKEAEQLAAKIALKKK-LW 234 >gi|289547872|ref|YP_003472860.1| ribonuclease III [Thermocrinis albus DSM 14484] gi|289181489|gb|ADC88733.1| ribonuclease III [Thermocrinis albus DSM 14484] Length = 237 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/217 (37%), Positives = 127/217 (58%), Gaps = 11/217 (5%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +EK +GY+F + SLLE+ALTH S++ + SYE LEFLGD ++ L + LL +F ++ Sbjct: 11 VIEKVLGYSFRDPSLLEEALTHRSVAVG-RRSYEVLEFLGDALINLFVVDLLLQNFPQSR 69 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+L++ VS + SQ+++EL L S I++ RK++ S SI ADV E+L A+Y Sbjct: 70 EGQLAIMKAFFVSEDFLSQLSQELGLESLIKMERR-RKNISS---SILADVFEALWGAIY 125 Query: 128 LDGGIEVAGT---FVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +D G ++ T F Y ++ + +K G +R+D KT LQE + P Y++ G Sbjct: 126 MDTGRDLNTTRDLFFKNYGERILQVVKEGSYRKDYKTLLQELTQHLWKTRPTYRLIGTEG 185 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 P H+ F V ++ G A G SK+ AEQ +A ++ Sbjct: 186 PHHNRIFEVECQV-GSYRAVGKGKSKKEAEQESAKKL 221 >gi|224534577|ref|ZP_03675153.1| ribonuclease III [Borrelia spielmanii A14S] gi|224514254|gb|EEF84572.1| ribonuclease III [Borrelia spielmanii A14S] Length = 245 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/212 (36%), Positives = 114/212 (53%), Gaps = 9/212 (4%) Query: 17 FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F N LL AL+HSS S+ + + ERLEFLGD +L L+I+ L+ + + EGELS Sbjct: 29 FNNFDLLNTALSHSSYSNELDQKSGNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSK 88 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + +VS ++ S +ARE+DL S+I + + I AD +E+ + A+YLD G Sbjct: 89 ARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFS 148 Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 +A FV D Y + G F +D K+ LQE+ K+ ++P YK+ GPDHD F Sbjct: 149 IATEFVVGLFDMYIR-LMFNRGDF-KDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVF 206 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V + + + G SK+ AE AA LK Sbjct: 207 CVELYVGEKFISNGKGKSKKEAEMRAAEVALK 238 >gi|150016054|ref|YP_001308308.1| ribonuclease III [Clostridium beijerinckii NCIMB 8052] gi|189043303|sp|A6LSM2|RNC_CLOB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|149902519|gb|ABR33352.1| Ribonuclease III [Clostridium beijerinckii NCIMB 8052] Length = 232 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M+ +E+ +G F N +LL+ ALTHSS + ++ E ERLEFLGD +L L I+ Sbjct: 1 MNRYTLKEIEENLGVFFNNHTLLKTALTHSSFGNQFKDAEYNERLEFLGDSVLQLCITEY 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LFN++ EGEL+ + +V + ++A++++L S+IR+S SIQAD Sbjct: 61 LFNNYKHKTEGELTKIRSLIVCENSLYEIAKKINLGSYIRMSKGEEITGGRERISIQADA 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYK 176 VE++IAA+YLD GI F+ ++++ K + + D KT+LQE V +Y+ Sbjct: 121 VEAIIAAVYLDKGIGFVRDFILLHFEEIINKAINNEIVLDFKTKLQELLQKDGEVVIQYE 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +T GP H +F V I +G SK+ AEQ AA + L Sbjct: 181 LTKFEGPPHRRKFFTNVVIDKKLMGEGSGYSKKEAEQNAAKQAL 224 >gi|25010800|ref|NP_735195.1| ribonuclease III [Streptococcus agalactiae NEM316] gi|76788414|ref|YP_329471.1| ribonuclease III [Streptococcus agalactiae A909] gi|76798198|ref|ZP_00780449.1| ribonuclease III [Streptococcus agalactiae 18RS21] gi|77406421|ref|ZP_00783480.1| ribonuclease III [Streptococcus agalactiae H36B] gi|77408361|ref|ZP_00785102.1| ribonuclease III [Streptococcus agalactiae COH1] gi|77410795|ref|ZP_00787153.1| ribonuclease III [Streptococcus agalactiae CJB111] gi|77413080|ref|ZP_00789281.1| ribonuclease III [Streptococcus agalactiae 515] gi|81457210|sp|Q8E680|RNC_STRA3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101649|sp|Q3K1Y2|RNC_STRA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101650|sp|Q8E0K7|RNC_STRA5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|23095154|emb|CAD46389.1| Unknown [Streptococcus agalactiae NEM316] gi|76563471|gb|ABA46055.1| ribonuclease III [Streptococcus agalactiae A909] gi|76586461|gb|EAO62968.1| ribonuclease III [Streptococcus agalactiae 18RS21] gi|77160873|gb|EAO71983.1| ribonuclease III [Streptococcus agalactiae 515] gi|77163174|gb|EAO74127.1| ribonuclease III [Streptococcus agalactiae CJB111] gi|77173042|gb|EAO76170.1| ribonuclease III [Streptococcus agalactiae COH1] gi|77174985|gb|EAO77795.1| ribonuclease III [Streptococcus agalactiae H36B] Length = 228 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 118/226 (52%), Gaps = 8/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M LR S LEK G FAN+ LL+ A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELR-SKLEKDYGIVFANQELLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+LS + +V E+ + +R +I++ K +I Sbjct: 60 QYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+EV FV+K K G + R D KT LQE + V + Sbjct: 120 DLFEAFLGALLLDKGVEVVHAFVNKVMIPHVEK-GTYERVKDYKTSLQELLQSHGDVKID 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y+VT SGP H F V V ++ +QG+ SK+AAEQ AA L Sbjct: 179 YQVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNAL 224 >gi|293609826|ref|ZP_06692128.1| ribonuclease 3 [Acinetobacter sp. SH024] gi|292828278|gb|EFF86641.1| ribonuclease 3 [Acinetobacter sp. SH024] Length = 230 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 116/213 (54%), Gaps = 5/213 (2%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 RIGY F LL+ ALTH S+SH Y +YERLEFLGD +LG++I+ L++ + + EG L Sbjct: 16 RIGYQFKQLELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPNENEGRL 73 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + +LV E ++A +L L+ + +S+ K SI AD VE++I A+YLD G Sbjct: 74 TRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSG 133 Query: 132 -IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 + + V K++ ++ +D K+ LQE+ A+ P Y+V G Sbjct: 134 DLNLLKDIVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQH 193 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V + GL G S+R AEQ AAAE+LK Sbjct: 194 FKVECVVDGLPKIYGEGSSRRFAEQAAAAEILK 226 >gi|301168615|emb|CBW28205.1| RNase III [Haemophilus influenzae 10810] Length = 227 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 121/222 (54%), Gaps = 15/222 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++IGY F + +LL++ALTH S + + E RLEFLGD IL I+ L++ F E Sbjct: 7 LERKIGYCFNDITLLKQALTHRSAATQHNE---RLEFLGDSILNFTIAEALYHQFPRCNE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +LV T + +AR+ +L ++ + S K+ SI AD VE++I A+ L Sbjct: 64 GELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSL 123 Query: 129 DGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D G+ V T V + W Q+ L K G ++DAKT LQE+ K P Y+V G H Sbjct: 124 DQGLAVT-TQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGEAH 182 Query: 186 DPRFTVVVEISGLAP------AQGMDCSKRAAEQVAAAEVLK 221 FTV ++ A+G S+R AEQ AA ++LK Sbjct: 183 CQIFTVECKVKSAGKIDRTFVAKG--SSRRKAEQAAAEQILK 222 >gi|22536887|ref|NP_687738.1| ribonuclease III [Streptococcus agalactiae 2603V/R] gi|22533737|gb|AAM99610.1|AE014224_13 ribonuclease III [Streptococcus agalactiae 2603V/R] gi|319744744|gb|EFV97086.1| ribonuclease III [Streptococcus agalactiae ATCC 13813] Length = 236 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 118/226 (52%), Gaps = 8/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M LR S LEK G FAN+ LL+ A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 9 MKELR-SKLEKDYGIVFANQELLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 67 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+LS + +V E+ + +R +I++ K +I Sbjct: 68 QYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTILG 127 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+EV FV+K K G + R D KT LQE + V + Sbjct: 128 DLFEAFLGALLLDKGVEVVHAFVNKVMIPHVEK-GTYERVKDYKTSLQELLQSHGDVKID 186 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y+VT SGP H F V V ++ +QG+ SK+AAEQ AA L Sbjct: 187 YQVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNAL 232 >gi|51473232|ref|YP_066989.1| ribonuclease III [Rickettsia typhi str. Wilmington] gi|81390308|sp|Q68XY5|RNC_RICTY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|51459544|gb|AAU03507.1| RNase D [Rickettsia typhi str. Wilmington] Length = 227 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/194 (37%), Positives = 106/194 (54%), Gaps = 4/194 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 + LE +GY+F N+ LL +AL+H S+ + Y + YERLEFLGD +L LLI+ +LF Sbjct: 4 FEKLETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLITEILFK 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +F++ KEG L+ + LV ET V +L L +I ++ + +V E+ Sbjct: 64 NFENYKEGNLAKIRSYLVCKETICIVGTKLALKDYIIMTHGEEVAGGRDNPNNIENVTEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 LIAA+YLD IE+ ++K W + D KT LQEWA A P Y++ R Sbjct: 124 LIAAIYLDSNIEITHNIIEKLWAEFMKVQNLTDYDPKTALQEWAQASSNHLPIYRLIKRE 183 Query: 182 GPDHDPRFTVVVEI 195 G H FTV+V++ Sbjct: 184 GAAHSSIFTVLVKV 197 >gi|90416440|ref|ZP_01224371.1| ribonuclease III [marine gamma proteobacterium HTCC2207] gi|90331639|gb|EAS46867.1| ribonuclease III [marine gamma proteobacterium HTCC2207] Length = 225 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/218 (36%), Positives = 122/218 (55%), Gaps = 8/218 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ R+ Y F++ LL AL+H S + + ERLEFLGD +LG+ IS+ LF F A+E Sbjct: 8 LQDRLQYQFSDPQLLTLALSHRSCGSN---NNERLEFLGDAVLGMAISSFLFQRFPEARE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS + +V AE+ +++AR+LDL + + K SI D VE+L+ A++L Sbjct: 65 GDLSRIRSQVVRAESLAEIARKLDLGPELLLGPGEMKSGGHRRDSILGDTVEALLGAVFL 124 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D G+ VA + W +L + +DAKT LQEW A+ PEY+V G DH Sbjct: 125 DQGL-VAVEACVQNWFGASLNTLTLDTPVKDAKTALQEWLQARGKPLPEYRVVKTEGEDH 183 Query: 186 DPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 FT+ +I + A+ S+R AEQ+ A +++K+ Sbjct: 184 SRLFTMSCKIDAVDETAEATASSRRKAEQLVAEKLVKK 221 >gi|297202624|ref|ZP_06920021.1| ribonuclease III [Streptomyces sviceus ATCC 29083] gi|197713199|gb|EDY57233.1| ribonuclease III [Streptomyces sviceus ATCC 29083] Length = 272 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/215 (36%), Positives = 117/215 (54%), Gaps = 6/215 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+N Sbjct: 16 HTLLEGRLGYKLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYNTH 74 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ ++V++ ++V R LDL SFIR+ SI AD +E++I Sbjct: 75 PDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVI 134 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G++ A V + + KS D KT LQE + PEY VT + Sbjct: 135 GAVYLDQGLKAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT-ET 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 194 GPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 228 >gi|323491198|ref|ZP_08096384.1| ribonuclease III [Vibrio brasiliensis LMG 20546] gi|323314566|gb|EGA67644.1| ribonuclease III [Vibrio brasiliensis LMG 20546] Length = 225 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 113/206 (54%), Gaps = 6/206 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LEK++GY F + L+ ALTH S ++ + ERLEFLGD IL +I+ L++ F Sbjct: 6 AKLEKKLGYQFNDAELISLALTHRS---AHGKHNERLEFLGDSILSFVIADDLYHRFPKV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE +L +++ K SI AD VE++I A+ Sbjct: 63 NEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD IEV + ++K R A+K G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSDIEVVRGIILSWYKTRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVTNIKGEA 182 Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKR 209 H+ FTV +++G+ P G S+R Sbjct: 183 HNQEFTVSCDVAGIGQPVIGKGTSRR 208 >gi|29829207|ref|NP_823841.1| ribonuclease III [Streptomyces avermitilis MA-4680] gi|81719920|sp|Q82JT9|RNC_STRAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|29606313|dbj|BAC70376.1| putative ribonuclease III [Streptomyces avermitilis MA-4680] Length = 276 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/219 (36%), Positives = 119/219 (54%), Gaps = 6/219 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 17 TASSHTLLEGRLGYKLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 75 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SFIR+ SI AD + Sbjct: 76 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 135 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G+E AG V + + KS D KT LQE + PEY V Sbjct: 136 EAVIGAVYLDQGLEAAGELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLV 195 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T +GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 196 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 233 >gi|68248565|ref|YP_247677.1| ribonuclease III [Haemophilus influenzae 86-028NP] gi|145629132|ref|ZP_01784931.1| ribonuclease III [Haemophilus influenzae 22.1-21] gi|145633429|ref|ZP_01789159.1| ribonuclease III [Haemophilus influenzae 3655] gi|145636782|ref|ZP_01792448.1| ribonuclease III [Haemophilus influenzae PittHH] gi|145639697|ref|ZP_01795300.1| ribonuclease III [Haemophilus influenzae PittII] gi|148825705|ref|YP_001290458.1| ribonuclease III [Haemophilus influenzae PittEE] gi|229846933|ref|ZP_04467039.1| ribonuclease III [Haemophilus influenzae 7P49H1] gi|260582072|ref|ZP_05849867.1| ribonuclease III [Haemophilus influenzae NT127] gi|81337008|sp|Q4QPN0|RNC_HAEI8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043319|sp|A5UBC4|RNC_HAEIE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|68056764|gb|AAX87017.1| ribonuclease III [Haemophilus influenzae 86-028NP] gi|144978635|gb|EDJ88358.1| ribonuclease III [Haemophilus influenzae 22.1-21] gi|144985992|gb|EDJ92594.1| ribonuclease III [Haemophilus influenzae 3655] gi|145270080|gb|EDK10017.1| ribonuclease III [Haemophilus influenzae PittHH] gi|145271254|gb|EDK11168.1| ribonuclease III [Haemophilus influenzae PittII] gi|148715865|gb|ABQ98075.1| ribonuclease III [Haemophilus influenzae PittEE] gi|229810017|gb|EEP45737.1| ribonuclease III [Haemophilus influenzae 7P49H1] gi|260094962|gb|EEW78855.1| ribonuclease III [Haemophilus influenzae NT127] gi|309750667|gb|ADO80651.1| RNase III, dsRNA [Haemophilus influenzae R2866] Length = 227 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 121/222 (54%), Gaps = 15/222 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++IGY F + +LL++ALTH S + + E RLEFLGD IL I+ L++ F E Sbjct: 7 LERKIGYCFNDIALLKQALTHRSAATQHNE---RLEFLGDSILNFTIAEALYHQFPRCNE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +LV T + +AR+ +L ++ + S K+ SI AD VE++I A+ L Sbjct: 64 GELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSL 123 Query: 129 DGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D G+ V T V + W Q+ L K G ++DAKT LQE+ K P Y+V G H Sbjct: 124 DQGLAVT-TQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGEAH 182 Query: 186 DPRFTVVVEISGLAP------AQGMDCSKRAAEQVAAAEVLK 221 FTV ++ A+G S+R AEQ AA ++LK Sbjct: 183 CQIFTVECKVKSAGKIDRTFVAKG--SSRRKAEQAAAEQILK 222 >gi|116748321|ref|YP_845008.1| ribonuclease III [Syntrophobacter fumaroxidans MPOB] gi|189043370|sp|A0LGM1|RNC_SYNFM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116697385|gb|ABK16573.1| RNAse III [Syntrophobacter fumaroxidans MPOB] Length = 242 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 119/225 (52%), Gaps = 14/225 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHFD 64 L+ +GY F + LL +AL H S H ++ E LEFLGD +LGL IS L F Sbjct: 10 LQNLLGYRFGDEGLLHRALVHRSYLHENPHLDEKDNETLEFLGDAVLGLAISHFLLEQFP 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGELS +++V+ +++A EL+L ++ + S+ AD +E+L+A Sbjct: 70 DYNEGELSRLRSAIVNERELTRIAVELNLGEYLLLGKGEEMTGGRRKASLLADSLEALLA 129 Query: 125 ALYLDGGIEVAGTFVDKYW--------KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 ++YLDGG++ + K + ++ LK+ +D KT+LQE A++ +TP Y Sbjct: 130 SIYLDGGLDAVLGVIKKLFDVYLRFEKREHVLKA--LDKDYKTQLQELTQARYKLTPVYV 187 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + GPDHD F + V + G A G SK+ A+Q AA + L+ Sbjct: 188 LDREEGPDHDKTFHMNVVLEGQVLAGGSGKSKKDAQQAAAEKALQ 232 >gi|295100361|emb|CBK97906.1| RNAse III [Faecalibacterium prausnitzii L2-6] Length = 224 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 126/227 (55%), Gaps = 21/227 (9%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 LE IGY F + LLE ALTH+S ++ + + ERLEFLGD +L ++ + LF+ + Sbjct: 5 LETIIGYKFKHPELLETALTHTSYANETRPPVKHNERLEFLGDSVLQIVSADYLFHAYAD 64 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLI 123 EG+L+ +SLVS Q A+E++L ++R+ ++ C T S+ +D E+LI Sbjct: 65 RPEGDLTRIRSSLVSEGALFQFAQEINLGDYLRLGRG--EEHCGGRTRPSVVSDAFEALI 122 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTF--- 179 AALYLDGG+EVA F+ + + GK D KT LQE PE K+++ Sbjct: 123 AALYLDGGMEVAKNFILPF-----ITEGKHAEADYKTRLQEIVQQ----NPEEKLSYVVE 173 Query: 180 -RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +GPDH+ F V V + A+G SK+ AEQ AA E LK G+ Sbjct: 174 QETGPDHNKHFVVAVRFNSDCVARGEGRSKKMAEQHAAREALKLLGV 220 >gi|54294754|ref|YP_127169.1| hypothetical protein lpl1831 [Legionella pneumophila str. Lens] gi|81368418|sp|Q5WVI4|RNC_LEGPL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|53754586|emb|CAH16070.1| hypothetical protein lpl1831 [Legionella pneumophila str. Lens] Length = 224 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/217 (36%), Positives = 119/217 (54%), Gaps = 6/217 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +R+ Y F N + L++ALTH S ++YER EFLGD IL +I+ LFN F E Sbjct: 8 LCRRLNYHFNNMAYLKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFNRFPLHSE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS + LV E +++ARE+ L ++ + + TSI AD +E+++AA+YL Sbjct: 65 GQLSRLRSFLVKGEMLAEIAREIGLGDYLFLGQGELRSGGFRRTSILADALEAILAAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 DGG+ A + + R +DAKT+LQE+ A PEY +T G +H Sbjct: 125 DGGMTAAKQIILMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKVEGDEHA 184 Query: 187 PRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKR 222 F V I G++ A G ++R AEQ+AA +L++ Sbjct: 185 QIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLEQ 221 >gi|256821980|ref|YP_003145943.1| ribonuclease III [Kangiella koreensis DSM 16069] gi|256795519|gb|ACV26175.1| ribonuclease III [Kangiella koreensis DSM 16069] Length = 229 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 118/212 (55%), Gaps = 6/212 (2%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 R+GY F++ SLL+ ALTH S ++ + E RLEFLGD ILG++I+ LF H A EG+L Sbjct: 14 RLGYQFSDPSLLKLALTHRSGANKHNE---RLEFLGDAILGMVIAEYLFTHLKKADEGQL 70 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + SLV +T +++A+E++L + + K SI AD +E++I A+Y D G Sbjct: 71 TRLRASLVKGKTLAEIAKEIELGECLYLGEGELKSGGFRRASILADALEAIIGAVYQDSG 130 Query: 132 IEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 EVA T + +++R + +D KTELQEW ++ P+Y++ +G H F Sbjct: 131 FEVAKTIILTLYQKRLQNIDLKAVHKDPKTELQEWLQSRKLPLPDYELLKVTGDPHKQTF 190 Query: 190 TVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVL 220 V ++ G S+R AEQ AA + L Sbjct: 191 DVACILAEKKVRTHGSGSSRRNAEQQAAEKAL 222 >gi|315652049|ref|ZP_07905050.1| ribonuclease III [Eubacterium saburreum DSM 3986] gi|315485696|gb|EFU76077.1| ribonuclease III [Eubacterium saburreum DSM 3986] Length = 228 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 116/222 (52%), Gaps = 5/222 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L++ +GY + NR LL++ALTHSS ++ +Q S ERLEFLGD +L L+ S + Sbjct: 6 NELQELLGYEYKNRELLKQALTHSSYANEHQLGKNGSNERLEFLGDAVLELVSSEFFYEV 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EGEL+ S V A + L+ FIR+ F SI +D E++ Sbjct: 66 YPDKPEGELTKIRASFVCEPALVDCAGNIRLSEFIRLGKGEEHTGGRFRPSIISDTFEAV 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I ++YLDGG A + K+ ++ F D+KT LQE ++ EY + G Sbjct: 126 IGSIYLDGGFANAKEVILKFI-LNGYENKVFFYDSKTILQEIIQSQDSRPVEYCLLSEEG 184 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH +F V V I+G G SK++AEQ AA E LK+ G Sbjct: 185 PDHLKKFVVAVNINGQVAGVGEGVSKKSAEQAAAYEALKKLG 226 >gi|51598958|ref|YP_073146.1| ribonuclease III [Borrelia garinii PBi] gi|219684131|ref|ZP_03539075.1| ribonuclease III [Borrelia garinii PBr] gi|81609804|sp|Q660G7|RNC_BORGA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|51573529|gb|AAU07554.1| ribonuclease III [Borrelia garinii PBi] gi|219672120|gb|EED29173.1| ribonuclease III [Borrelia garinii PBr] Length = 245 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/212 (36%), Positives = 114/212 (53%), Gaps = 9/212 (4%) Query: 17 FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F N LL AL+HSS S+ + + ERLEFLGD +L L+I+ L+ + + EGELS Sbjct: 29 FNNFDLLNTALSHSSYSNELDQKADNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSK 88 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + +VS ++ S +ARE+DL S+I + + I AD +E+ + A+YLD G Sbjct: 89 ARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFS 148 Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 +A FV D Y + G F +D K+ LQE+ K+ ++P YK+ GPDHD F Sbjct: 149 MATEFVVGLFDMYIR-LMFNRGDF-KDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVF 206 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V + + + G SK+ AE AA LK Sbjct: 207 CVELYVGEKFISNGKGKSKKEAEMRAAEVALK 238 >gi|111115536|ref|YP_710154.1| ribonuclease III [Borrelia afzelii PKo] gi|123341290|sp|Q0SMF0|RNC_BORAP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|110890810|gb|ABH01978.1| ribonuclease III [Borrelia afzelii PKo] Length = 245 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/212 (36%), Positives = 114/212 (53%), Gaps = 9/212 (4%) Query: 17 FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F N LL AL+HSS S+ + + ERLEFLGD +L L+I+ L+ + + EGELS Sbjct: 29 FNNFDLLNTALSHSSYSNELDQKSDNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSK 88 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + +VS ++ S +ARE+DL S+I + + I AD +E+ + A+YLD G Sbjct: 89 ARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFL 148 Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 +A FV D Y + G F +D K+ LQE+ K+ ++P YK+ GPDHD F Sbjct: 149 IATEFVVGLFDMYIR-LMFNRGDF-KDYKSLLQEYVQKKYKISPNYKLDKEIGPDHDKVF 206 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V + + + G SK+ AE AA LK Sbjct: 207 CVELYVGEKFISNGKGKSKKEAEMRAAEVALK 238 >gi|83753776|pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.1- Angstrom Resolution gi|83753777|pdb|1YZ9|B Chain B, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.1- Angstrom Resolution Length = 221 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 122/218 (55%), Gaps = 14/218 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK++GY F ++SLLEKALTH +S+S +E YE LEFLGD ++ I LL + + +E Sbjct: 7 LEKKLGYTFKDKSLLEKALTH--VSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKRE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS L+S E + +A++L+L FIR+ +I DV ++L AA+Y+ Sbjct: 65 GFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFQALWAAVYI 118 Query: 129 DGGIEVAGT--FVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 D G + T K +K+ A+K G+ ++D KT LQE ++ PEY++ GP Sbjct: 119 DSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGP 178 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H +F V +I G SK+ AEQ AA E++K Sbjct: 179 HHKKKFIVEAKIKEYRTL-GEGKSKKEAEQRAAEELIK 215 >gi|91205996|ref|YP_538351.1| ribonuclease III [Rickettsia bellii RML369-C] gi|157826640|ref|YP_001495704.1| ribonuclease III [Rickettsia bellii OSU 85-389] gi|122425284|sp|Q1RHA2|RNC_RICBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043340|sp|A8GYE2|RNC_RICB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|91069540|gb|ABE05262.1| Ribonuclease III [Rickettsia bellii RML369-C] gi|157801944|gb|ABV78667.1| ribonuclease III [Rickettsia bellii OSU 85-389] Length = 227 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 118/221 (53%), Gaps = 5/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + LEK + Y+F N++LL +AL+H S+ H Y+ + YERLEFLGD +L L+I+ +LFN Sbjct: 4 FEELEKLLDYSFKNKALLTEALSHPSLRQHHEYKANKDYERLEFLGDAVLNLIITEILFN 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +F EG L+ + LV ET V +L L ++I ++ + +V E+ Sbjct: 64 NFKEYNEGNLAKIRSYLVCKETICVVGAKLGLKNYIIMTHGEEIAGGRDNPNNIENVTEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 LIAA+YLD I + K W + D KT LQEWA +K P Y++ R Sbjct: 124 LIAAIYLDSDITTIHNIIGKLWAEFIKVKDLTDYDPKTALQEWAQSKDHHIPIYRLIKRE 183 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G H FTV V+I+G G S + AE+ AA E+L + Sbjct: 184 GVAHLSTFTVSVKINGYEQT-GKGHSIKEAEKNAARELLHK 223 >gi|307256562|ref|ZP_07538343.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864972|gb|EFM96874.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 243 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 120/226 (53%), Gaps = 8/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++GY F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 18 MNNMQLERLQKKLGYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 75 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ++IAA+YLD G++ A V W Q L K G ++D KT LQE+ + P Y+V Sbjct: 135 AIIAAIYLDAGMDKAIAQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEV 193 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 G H+ F V +I L G+ S+R AEQ AA +VL + Sbjct: 194 LDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAK 239 >gi|85059765|ref|YP_455467.1| ribonuclease III [Sodalis glossinidius str. 'morsitans'] gi|123519061|sp|Q2NS13|RNC_SODGM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|84780285|dbj|BAE75062.1| ribonuclease III [Sodalis glossinidius str. 'morsitans'] Length = 226 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+K++GY F LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPILTNRLQKKLGYTFQQHDLLLQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 QRFPRVDEGDMSRMRATLVRGNTLAEMAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + +++ R + G ++D KT LQE+ + P Y+V Sbjct: 118 ALIGGVFLDSDIRTVEKLILDWYRSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYQVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 G HD FT+ ++SGLA P G S+R AEQ AA + LK Sbjct: 178 QVRGEAHDQEFTIHCQVSGLAQPVVGNGSSRRKAEQAAAEQALK 221 >gi|167630237|ref|YP_001680736.1| ribonuclease iii [Heliobacterium modesticaldum Ice1] gi|226735377|sp|B0TGW4|RNC_HELMI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|167592977|gb|ABZ84725.1| ribonuclease iii [Heliobacterium modesticaldum Ice1] Length = 235 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 110/220 (50%), Gaps = 5/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + L +RIG A + + LE ALTH S + E +RLEFLGD +LGL+I LF Sbjct: 9 AELARRIGIASEDLATLEMALTHPSFVYENPQAPPEHNQRLEFLGDAVLGLVIGEQLFVR 68 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + + EGELS R ++V + AR L L +++++ SI AD +E++ Sbjct: 69 YPTWTEGELSRRRAAVVCEANLADGARRLQLGAWLKLGRGEEASGGREKPSILADALEAV 128 Query: 123 IAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 I A++L GGIE A F VD + A D KT QEW Y + S Sbjct: 129 IGAIFLSGGIEAARRFIVDLFGDALANAQNLVSGDNKTAFQEWVQRTGPADIRYCIVDES 188 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDHD RF V ++G A G +K+ AEQ AA ++ Sbjct: 189 GPDHDKRFVAAVMVNGTVIADGQGRTKKEAEQQAAGRAMR 228 >gi|59712694|ref|YP_205470.1| ribonuclease III [Vibrio fischeri ES114] gi|197335272|ref|YP_002156886.1| ribonuclease III [Vibrio fischeri MJ11] gi|75431522|sp|Q5E314|RNC_VIBF1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|59480795|gb|AAW86582.1| RNase III [Vibrio fischeri ES114] gi|197316762|gb|ACH66209.1| ribonuclease III [Vibrio fischeri MJ11] Length = 223 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/211 (35%), Positives = 113/211 (53%), Gaps = 6/211 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK+IGY F + S L+ ALTH S + ++ E RLEFLGD IL +++ L++ F E Sbjct: 8 LEKKIGYQFKDESFLKLALTHRSANGTHNE---RLEFLGDSILSFVVADDLYHRFPKVDE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++ RE L ++ + K SI AD VE++I A+YL Sbjct: 65 GDMSRMRATLVRGHTLAELGREFQLGDYLYLGPGELKSGGFRRDSILADAVEAIIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D E + ++ R +++ G ++D KT LQE+ + P Y VT G H+ Sbjct: 125 DSDTETVRGIILSWYNTRLESIEPGVSQKDPKTRLQEYLQGRRKPLPTYTVTKIKGEAHN 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAA 216 FT+ ++GL P G S+R AEQ AA Sbjct: 185 QEFTIECIVAGLDKPVIGKGSSRRKAEQSAA 215 >gi|16271989|ref|NP_438187.1| ribonuclease III [Haemophilus influenzae Rd KW20] gi|260580682|ref|ZP_05848509.1| ribonuclease III [Haemophilus influenzae RdAW] gi|1173093|sp|P44441|RNC_HAEIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|1572958|gb|AAC21692.1| ribonuclease III (rnc) [Haemophilus influenzae Rd KW20] gi|260092744|gb|EEW76680.1| ribonuclease III [Haemophilus influenzae RdAW] Length = 227 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 122/223 (54%), Gaps = 17/223 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++IGY F + +LL++ALTH S + + E RLEFLGD IL I+ L++ F E Sbjct: 7 LERKIGYRFNDIALLKQALTHRSAATQHNE---RLEFLGDSILNFTIAEALYHQFPRCNE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +LV T + +AR+ +L ++ + S K+ SI AD VE++I A+ L Sbjct: 64 GELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSL 123 Query: 129 DGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D G+ V T V + W Q+ L K G ++DAKT LQE+ K P Y+V G H Sbjct: 124 DQGLAVT-TQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGEAH 182 Query: 186 DPRFTVVVEISGLAPAQGMD-------CSKRAAEQVAAAEVLK 221 FTV ++ A+ +D S+R AEQ AA ++LK Sbjct: 183 CQIFTVKCKVKS---AEKIDRTFVAKGSSRRKAEQAAAEQILK 222 >gi|152993835|ref|YP_001359556.1| ribonuclease III [Sulfurovum sp. NBC37-1] gi|189043369|sp|A6QCJ0|RNC_SULNB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|151425696|dbj|BAF73199.1| ribonuclease III [Sulfurovum sp. NBC37-1] Length = 223 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 116/222 (52%), Gaps = 7/222 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS LEKR+ Y F ++ L+ +ALTH S Y ERLEFLGD +L L++ LF F Sbjct: 4 YSQLEKRLNYTFKDKQLIIEALTHKSYKKPYNN--ERLEFLGDAVLDLIVGEYLFKKFPK 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 + EG LS SLV+ + +AR++DL S+I +S + S+ ++ E++I A Sbjct: 62 SDEGILSKIRASLVNESGFTLLARKIDLGSYIYLSLAEENNNGRDKPSLLSNAFEAIIGA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G++ A K ++ + +D KT LQE A VTP Y++ SGP Sbjct: 122 VYLEAGLDTAKEISIKLLEECHPKIDLQSLSKDYKTALQELTQATHAVTPGYEMLGSSGP 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKR 222 DH F + V + A SK+ A+Q AA E LK+ Sbjct: 182 DHKKEFEIAVTLDNKTIATAKGKSKKDAQQKAAKIALEALKK 223 >gi|255320780|ref|ZP_05361955.1| ribonuclease III [Acinetobacter radioresistens SK82] gi|262379444|ref|ZP_06072600.1| ribonuclease III [Acinetobacter radioresistens SH164] gi|255302157|gb|EET81399.1| ribonuclease III [Acinetobacter radioresistens SK82] gi|262298901|gb|EEY86814.1| ribonuclease III [Acinetobacter radioresistens SH164] Length = 230 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/216 (36%), Positives = 117/216 (54%), Gaps = 5/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L RIGY F LL+ ALTH S+SH Y +YERLEFLGD +LG++I+ L++ + E Sbjct: 13 LPSRIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPFENE 70 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ +LV E ++A +L L+ + +S+ K SI AD VE++I A+Y+ Sbjct: 71 GRLTRMRATLVRQEALGKIANDLKLSQCLILSTGELKSGGHHRESILADTVEAIIGAIYI 130 Query: 129 DGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D G +++ V K++ ++ +D K+ LQE+ A+ P Y+V G Sbjct: 131 DCGELKILQDIVLKWYGPYLNNIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAP 190 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + F V + L G S+R AEQ AAAE+LK Sbjct: 191 NQHFKVECSVDSLPKFIGEGSSRRFAEQAAAAEILK 226 >gi|150390513|ref|YP_001320562.1| ribonuclease III [Alkaliphilus metalliredigens QYMF] gi|149950375|gb|ABR48903.1| Ribonuclease III [Alkaliphilus metalliredigens QYMF] Length = 239 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 118/221 (53%), Gaps = 8/221 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 E+ I Y F ++ LL++ALTHSS ++ + + ERLEFLGD +LG++IS +F + Sbjct: 14 FEEMIQYQFKDKQLLKEALTHSSYANESKVKKIKHNERLEFLGDSVLGIIISDYIFKKYT 73 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ ++V A +++L F+R+ SI AD E+LI Sbjct: 74 HLPEGDLTKVRANVVCEPALGSCATKINLGGFLRLGRGEEVSGGRQRESILADAFEALIG 133 Query: 125 ALYLDGGIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 ALYLDGG+ +A TFV + ++A K FR D KT LQE +K Y+V S Sbjct: 134 ALYLDGGMVIAQTFVLNHLIDSVEQATKGSLFR-DYKTYLQELLQSKHSERITYQVIKES 192 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F V V + GM SK+ AEQ AA E +++ Sbjct: 193 GPDHSKIFDVEVLLGEQLLGHGMGKSKKEAEQRAAKEAVEK 233 >gi|332289238|ref|YP_004420090.1| ribonuclease III [Gallibacterium anatis UMN179] gi|330432134|gb|AEC17193.1| ribonuclease III [Gallibacterium anatis UMN179] Length = 226 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L+ ++ Y F +LL++ALTH S + E ERLEFLGD IL I L+ Sbjct: 1 MNNQHLDRLQNKLSYQFKKMALLQQALTHRSAA---SEHNERLEFLGDSILNFTIGEALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F + EG+LS +LV +T +Q+A E DL ++++ K +SI +D VE Sbjct: 58 HQFPKSAEGDLSRMRATLVREQTLAQIAIEFDLGEYLKLGPGELKSGGYRRSSILSDCVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD E + +++QR +K G ++D KT LQE+ P Y V Sbjct: 118 AIIGAIYLDSNFEKVKETILNWYQQRLAEIKPGDNQKDPKTRLQEYLQGIRQPLPTYNVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220 G H+ F V +IS +G+ S+R AEQ AA ++L Sbjct: 178 EIKGEAHNQTFKVTCKISQSDTLFEGIGSSRRKAEQAAAEKIL 220 >gi|145630695|ref|ZP_01786474.1| ribonuclease III [Haemophilus influenzae R3021] gi|145641851|ref|ZP_01797426.1| ribonuclease III [Haemophilus influenzae R3021] gi|144983821|gb|EDJ91271.1| ribonuclease III [Haemophilus influenzae R3021] gi|145273473|gb|EDK13344.1| ribonuclease III [Haemophilus influenzae 22.4-21] Length = 227 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 121/222 (54%), Gaps = 15/222 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++IGY F + +LL++ALTH S + + E RLEFLGD IL I+ L++ F E Sbjct: 7 LERKIGYRFNDIALLKQALTHRSAATQHNE---RLEFLGDSILNFTIAEALYHQFPRCNE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +LV T + +AR+ +L ++ + S K+ SI AD VE++I A+ L Sbjct: 64 GELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSL 123 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G+ V + +++Q +K G ++DAKT LQE+ K P Y+V G H Sbjct: 124 DQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGEAHC 183 Query: 187 PRFTVVVEISGLAPAQGMD-------CSKRAAEQVAAAEVLK 221 FTV ++ A+ +D S+R AEQ AA ++LK Sbjct: 184 QIFTVECKVKS---AEKIDRTFVAKGSSRRKAEQAAAEQILK 222 >gi|332305561|ref|YP_004433412.1| ribonuclease III [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172890|gb|AEE22144.1| ribonuclease III [Glaciecola agarilytica 4H-3-7+YE-5] Length = 227 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 118/219 (53%), Gaps = 6/219 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y L K++GY F + + L ALTH S+ ++ E RLEFLGD +LGL+I+ LF F Sbjct: 7 YKPLYKKLGYEFQDPNNLTIALTHRSVGANHNE---RLEFLGDAVLGLVIAKALFERFPK 63 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG L+ +SLV +T ++VARE L + + K SI AD VE++I A Sbjct: 64 QPEGNLTRMRSSLVKGDTLAEVAREFALGDLLLLGPGELKSGGHRRDSILADAVEAIIGA 123 Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +Y + G++ + ++ +R AL +D KT LQE+ + PEY+V SG Sbjct: 124 IYQEVGMQGCEPLILAWFAKRIEALNPDATPKDDKTRLQEYLQGRQLPLPEYEVIDISGK 183 Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 HD FTV ++GL +P G S+R AEQ A + L+ Sbjct: 184 SHDQTFTVKCTVAGLNSPIIGRGKSRRRAEQRTAKQALE 222 >gi|317009322|gb|ADU79902.1| ribonuclease III [Helicobacter pylori India7] Length = 239 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y LEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YIMLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VS +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSVHGFTKLAKAIALQDYLRVSSSEEVSNGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 136 VYLEAGLAKVHKIMQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 194 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 234 >gi|307245400|ref|ZP_07527488.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306853741|gb|EFM85958.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 243 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 120/226 (53%), Gaps = 8/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++GY F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 18 MNNMQLERLQKKLGYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 75 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ++IAA+YLD G++ A V W Q L K G ++D KT LQE+ + P Y+V Sbjct: 135 AIIAAIYLDAGMDKAIEQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEV 193 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 G H+ F V +I L G+ S+R AEQ AA +VL + Sbjct: 194 LDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAK 239 >gi|291454392|ref|ZP_06593782.1| ribonuclease III [Streptomyces albus J1074] gi|291357341|gb|EFE84243.1| ribonuclease III [Streptomyces albus J1074] Length = 265 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 80/219 (36%), Positives = 120/219 (54%), Gaps = 6/219 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 18 TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V+R L+L SFIR+ SI AD + Sbjct: 77 YRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLELGSFIRLGRGEEGTGGRDKASILADTL 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G+E AG V + + KS D KT LQE + PEY V Sbjct: 137 EAVIGAVYLDQGLEAAGELVHRLFDPLIEKSSSLGAGLDWKTSLQELTATEGLGVPEYLV 196 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T +GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 197 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 234 >gi|32266198|ref|NP_860230.1| ribonuclease III [Helicobacter hepaticus ATCC 51449] gi|81666107|sp|Q7VIA9|RNC_HELHP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|32262248|gb|AAP77296.1| ribonuclease III [Helicobacter hepaticus ATCC 51449] Length = 240 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/216 (34%), Positives = 112/216 (51%), Gaps = 4/216 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK++GY F N+ LL +ALTH S Y ERLEFLGD +L LL+ LF F AKE Sbjct: 13 LEKKLGYVFQNQQLLLEALTHKSCKKQYNN--ERLEFLGDAVLDLLVGEYLFKKFPLAKE 70 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +V+ + ++A+ LDL +++ +S + SI ++ E+LI A+YL Sbjct: 71 GELSKLRACIVNEKGFMKLAQSLDLGAYLYISQSEENNNGRQKASILSNAFEALIGAIYL 130 Query: 129 DGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + + + + + +K D KT LQE A +G P Y + SGPDH Sbjct: 131 ESSLTYVQSIIYDLLEYNYIKIDLDSLFMDYKTALQEITQAFYGEIPTYTLISESGPDHK 190 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F + + + G A+ SK+ A+Q +A K+ Sbjct: 191 KSFEIALSVQGKEYARASGNSKKEAQQKSAQIAYKK 226 >gi|269468620|gb|EEZ80264.1| dsRNA-specific ribonuclease [uncultured SUP05 cluster bacterium] Length = 221 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 120/221 (54%), Gaps = 14/221 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++I Y F + SLL+ ALTH S+ + + ERLEFLGD ILGL+IS L+ F E Sbjct: 4 LEQKIDYQFKDISLLKLALTHRSVG---KNNNERLEFLGDSILGLVISRELYKRFTHVDE 60 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS + LV +T +Q+A LDL++ + + S K SIQADVVE++ A++L Sbjct: 61 GKLSRLRSHLVRGQTLAQLASTLDLSNILILGSGELKSGGFRRESIQADVVEAIFGAVFL 120 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D + T + K +K+R + +D KT+LQE+ + P+Y++ G DH+ Sbjct: 121 DSDFDTVNTVILKLYKERLDIINPNDSLKDFKTQLQEYLQKRGNALPKYELIKTVGKDHN 180 Query: 187 PRFTVVVEISGLAPAQGMDCSKRA-----AEQVAAAEVLKR 222 FT+ + Q M ++A AEQ A +L R Sbjct: 181 AVFTINCSLQD----QNMKVKQKATSIKRAEQSCAQALLDR 217 >gi|47168737|pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Ds-Rna At 2.15 Angstrom Resolution Length = 220 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 122/218 (55%), Gaps = 14/218 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK++GY F ++SLLEKALTH +S+S +E YE LEFLGD ++ I LL + + +E Sbjct: 7 LEKKLGYTFKDKSLLEKALTH--VSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKRE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS L+S E + +A++L+L FIR+ +I DV ++L AA+Y+ Sbjct: 65 GFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFKALWAAVYI 118 Query: 129 DGGIEVAGT--FVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 D G + T K +K+ A+K G+ ++D KT LQE ++ PEY++ GP Sbjct: 119 DSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGP 178 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H +F V +I G SK+ AEQ AA E++K Sbjct: 179 HHKKKFIVEAKIKEYRTL-GEGKSKKEAEQRAAEELIK 215 >gi|148827174|ref|YP_001291927.1| ribonuclease III [Haemophilus influenzae PittGG] gi|189043320|sp|A5UFI8|RNC_HAEIG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|148718416|gb|ABQ99543.1| ribonuclease III [Haemophilus influenzae PittGG] Length = 227 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 121/222 (54%), Gaps = 15/222 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++IGY F + +LL++ALTH S + + E RLEFLGD IL I+ L++ F E Sbjct: 7 LERKIGYRFNDIALLKQALTHRSAATQHNE---RLEFLGDSILNFTIAEALYHQFPRCNE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +LV T + +AR+ +L ++ + S K+ SI AD VE++I A+ L Sbjct: 64 GELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSL 123 Query: 129 DGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D G+ V T V + W Q+ L K G ++DAKT LQE+ K P Y+V G H Sbjct: 124 DQGLAVT-TQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGEAH 182 Query: 186 DPRFTVVVEISGLAP------AQGMDCSKRAAEQVAAAEVLK 221 FTV ++ A+G S+R AEQ AA ++LK Sbjct: 183 CQIFTVECKVKSAGKIDRTFVAKG--SSRRKAEQAAAEQILK 222 >gi|90101637|sp|Q3IDL2|RNC_PSEHT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 225 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 80/217 (36%), Positives = 118/217 (54%), Gaps = 5/217 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L K I Y FA++ LLE+A+TH S H Q + ERLEFLGD IL +I+ L+ F A Sbjct: 6 TELYKTIDYIFADQGLLEQAMTHRS--HKGQHN-ERLEFLGDSILSFVIANALYAKFPKA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS ++LV +T ++ E L ++R+ K S AD VE++I A+ Sbjct: 63 REGDLSRMRSTLVRGQTLAEFGLEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIGAV 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LD IE G + ++++R A+ G ++D KT LQE A+ P Y V G Sbjct: 123 FLDSDIERCGELILSWYEERLNAISPGLNQKDPKTLLQEHLQARKLSLPGYTVVDTKGQA 182 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H+ FTV + G+ + S+R AEQ AA + LK Sbjct: 183 HNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALK 219 >gi|169632753|ref|YP_001706489.1| ribonuclease III [Acinetobacter baumannii SDF] gi|238688259|sp|B0VTM5|RNC_ACIBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|169151545|emb|CAP00312.1| ribonuclease III, ds RNA [Acinetobacter baumannii] Length = 230 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 115/213 (53%), Gaps = 5/213 (2%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 RIGY F LL+ ALTH S+SH Y +YERLEFLGD +LG++I+ L++ + EG L Sbjct: 16 RIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPHENEGRL 73 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + +LV E ++A +L L+ + +S+ K SI AD VE++I A+YLD Sbjct: 74 TRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSS 133 Query: 132 -IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 + + V K++ ++ +D K+ LQE+ A+ P Y+V G Sbjct: 134 DLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQH 193 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V + GL+ G S+R AEQ AAAE+LK Sbjct: 194 FKVECLVDGLSKIHGEGASRRFAEQAAAAEILK 226 >gi|15603994|ref|NP_220509.1| ribonuclease III [Rickettsia prowazekii str. Madrid E] gi|6226018|sp|Q9ZE31|RNC_RICPR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|3860685|emb|CAA14586.1| RIBONUCLEASE III (rnc) [Rickettsia prowazekii] Length = 225 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 5/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 + LE +GY+F N+ LL +AL+H S+ + Y + YERLEFLGD +L LLI+ +LF Sbjct: 4 FEKLETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLITEILFK 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +F++ KEG L+ + LV ET V +L L +I ++ + + E+ Sbjct: 64 NFENYKEGNLAKIRSYLVCKETICIVGTKLALKDYIIMTHGEEVAGGRDNPNNIENATEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 LIAA+YLD IE+ ++K W + D KT LQEWA A P Y++ R Sbjct: 124 LIAAIYLDSNIEITHNIIEKLWAEFMKVQNLTDYDPKTALQEWAQANSHHLPIYRLIKRE 183 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G H FTV+V++ S + AE+ AA +L R Sbjct: 184 GAAHSSIFTVLVKVKDYEQT-CTGYSIKEAEKKAARSLLHR 223 >gi|90109239|pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (D44n) Complexed With Product Of Double-Stranded Rna Processing gi|90109240|pdb|2EZ6|B Chain B, Crystal Structure Of Aquifex Aeolicus Rnase Iii (D44n) Complexed With Product Of Double-Stranded Rna Processing Length = 221 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 122/218 (55%), Gaps = 14/218 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK++GY F ++SLLEKALTH +S+S +E YE LEFLG+ ++ I LL + + +E Sbjct: 7 LEKKLGYTFKDKSLLEKALTH--VSYSKKEHYETLEFLGNALVNFFIVDLLVQYSPNKRE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS L+S E + +A++L+L FIR+ +I DV E+L AA+Y+ Sbjct: 65 GFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFEALWAAVYI 118 Query: 129 DGGIEVAGT--FVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 D G + T K +K+ A+K G+ ++D KT LQE ++ PEY++ GP Sbjct: 119 DSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGP 178 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H +F V +I G SK+ AEQ AA E++K Sbjct: 179 HHKKKFIVEAKIKEYRTL-GEGKSKKEAEQRAAEELIK 215 >gi|220931875|ref|YP_002508783.1| Ribonuclease III [Halothermothrix orenii H 168] gi|219993185|gb|ACL69788.1| Ribonuclease III [Halothermothrix orenii H 168] Length = 236 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/214 (35%), Positives = 111/214 (51%), Gaps = 6/214 (2%) Query: 17 FANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F + SLL+KA+TH S H E ERLEFLGD +L ++IST L+ +F EGEL+ Sbjct: 21 FNDISLLQKAVTHKSFVHEKSDPDLEDNERLEFLGDSVLSIVISTYLYKNFPEYNEGELA 80 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +VS+ + AREL L +I + + SI AD +E++I A+YLD G Sbjct: 81 KMRAYIVSSSHLACKARELGLGKYILMGKGEELNGGRERESILADTLEAVIGAIYLDQGF 140 Query: 133 EVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 + ++K + L G RD KT LQE+ +Y + GPDH+ +F Sbjct: 141 NTITDLLINFFKDDVKKLDQGNIIRDYKTYLQEFIQKDGSCEIKYNIINEYGPDHNKKFE 200 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V V+++G +G SK+ AEQ AA + L G Sbjct: 201 VGVKVNGKELGRGTGFSKKEAEQKAAKDALSNLG 234 >gi|83753758|pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.9- Angstrom Resolution gi|83753759|pdb|1YYO|B Chain B, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.9- Angstrom Resolution Length = 221 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 122/218 (55%), Gaps = 14/218 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK++GY F ++SLLEKALTH +S+S +E YE LEFLGD ++ I LL + + +E Sbjct: 7 LEKKLGYTFKDKSLLEKALTH--VSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKRE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS L+S E + +A++L+L FIR+ +I DV ++L AA+Y+ Sbjct: 65 GFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFKALWAAVYI 118 Query: 129 DGGIEVAGT--FVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 D G + T K +K+ A+K G+ ++D KT LQE ++ PEY++ GP Sbjct: 119 DSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGP 178 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H +F V +I G SK+ AEQ AA E++K Sbjct: 179 HHKKKFIVEAKIKEYRTL-GEGKSKKEAEQRAAEELIK 215 >gi|239982550|ref|ZP_04705074.1| ribonuclease III [Streptomyces albus J1074] Length = 260 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 80/219 (36%), Positives = 120/219 (54%), Gaps = 6/219 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 13 TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 71 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V+R L+L SFIR+ SI AD + Sbjct: 72 YRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLELGSFIRLGRGEEGTGGRDKASILADTL 131 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G+E AG V + + KS D KT LQE + PEY V Sbjct: 132 EAVIGAVYLDQGLEAAGELVHRLFDPLIEKSSSLGAGLDWKTSLQELTATEGLGVPEYLV 191 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T +GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 192 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 229 >gi|169795096|ref|YP_001712889.1| ribonuclease III [Acinetobacter baumannii AYE] gi|239501066|ref|ZP_04660376.1| ribonuclease III [Acinetobacter baumannii AB900] gi|260556582|ref|ZP_05828800.1| ribonuclease III [Acinetobacter baumannii ATCC 19606] gi|301345824|ref|ZP_07226565.1| ribonuclease III [Acinetobacter baumannii AB056] gi|301512403|ref|ZP_07237640.1| ribonuclease III [Acinetobacter baumannii AB058] gi|301594764|ref|ZP_07239772.1| ribonuclease III [Acinetobacter baumannii AB059] gi|332851055|ref|ZP_08433164.1| ribonuclease III [Acinetobacter baumannii 6013150] gi|332869696|ref|ZP_08438884.1| ribonuclease III [Acinetobacter baumannii 6013113] gi|332875945|ref|ZP_08443731.1| ribonuclease III [Acinetobacter baumannii 6014059] gi|238685526|sp|A3M7P2|RNC_ACIBT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238688097|sp|B0VCU0|RNC_ACIBY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|169148023|emb|CAM85886.1| ribonuclease III, ds RNA [Acinetobacter baumannii AYE] gi|193078016|gb|ABO12936.2| ribonuclease III [Acinetobacter baumannii ATCC 17978] gi|260409841|gb|EEX03141.1| ribonuclease III [Acinetobacter baumannii ATCC 19606] gi|332730219|gb|EGJ61544.1| ribonuclease III [Acinetobacter baumannii 6013150] gi|332732598|gb|EGJ63831.1| ribonuclease III [Acinetobacter baumannii 6013113] gi|332735811|gb|EGJ66852.1| ribonuclease III [Acinetobacter baumannii 6014059] Length = 230 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 115/213 (53%), Gaps = 5/213 (2%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 RIGY F LL+ ALTH S+SH Y +YERLEFLGD +LG++I+ L++ + EG L Sbjct: 16 RIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPHENEGRL 73 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + +LV E ++A +L L+ + +S+ K SI AD VE++I A+YLD Sbjct: 74 TRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSS 133 Query: 132 -IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 + + V K++ ++ +D K+ LQE+ A+ P Y+V G Sbjct: 134 DLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQH 193 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V + GL+ G S+R AEQ AAAE+LK Sbjct: 194 FKVECLVDGLSKIHGEGSSRRFAEQAAAAEILK 226 >gi|167751472|ref|ZP_02423599.1| hypothetical protein EUBSIR_02468 [Eubacterium siraeum DSM 15702] gi|167655280|gb|EDR99409.1| hypothetical protein EUBSIR_02468 [Eubacterium siraeum DSM 15702] gi|291557094|emb|CBL34211.1| RNAse III [Eubacterium siraeum V10Sc8a] Length = 226 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 121/228 (53%), Gaps = 11/228 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDS 65 + LE+ IGY F N LL++ALTHSS ++ + S ERLEFLGD +L +++S LF + + Sbjct: 2 TELEQIIGYTFKNPELLKEALTHSSYTNGKHLRSNERLEFLGDSVLSIVVSEHLFENLTN 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ S+V AR++DL +I + SI AD E+LIAA Sbjct: 62 LPEGQLTKIRASVVCENALYPFARKIDLGKYIFLGKGEEHTGGRDRHSILADAFEALIAA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQ-RALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTF---- 179 +YLDGG E A +F+ + L +GKF D KT LQE PE +VT+ Sbjct: 122 IYLDGGFEAARSFILPFIPPLDKLSTGKFLLGDYKTVLQEIIQQ----NPEERVTYEISD 177 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 SG H+ +FT V ++G G SK+ AEQ AA E + G T Sbjct: 178 ESGQAHNKQFTANVLLNGQIIGTGKGKSKKEAEQSAAKEAISLMGYET 225 >gi|300724126|ref|YP_003713443.1| RNase III, ds RNA [Xenorhabdus nematophila ATCC 19061] gi|297630660|emb|CBJ91325.1| RNase III, ds RNA [Xenorhabdus nematophila ATCC 19061] Length = 226 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 122/225 (54%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+A+ + L+ ++GY F LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNAILTNRLQHKLGYTFTQHDLLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD +E Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGHRRESILADSIE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGAIFLDSDIQTIEKIILNWYETRLNEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SG P +G+ S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGFEQPVRGVGSSRRKAEQAAAEQALKQ 222 >gi|192359963|ref|YP_001983041.1| ribonuclease III [Cellvibrio japonicus Ueda107] gi|190686128|gb|ACE83806.1| ribonuclease III [Cellvibrio japonicus Ueda107] Length = 225 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L+Y LE+R+GY+F ++ L+ ALTH S S + ERLEFLGD IL LI LF Sbjct: 1 MINLKYQRLEQRLGYSFNDQRQLQLALTHRSHGAS---NNERLEFLGDSILNFLIGEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 D A+EG++S + LV +T +++ARE +L + + K SI AD VE Sbjct: 58 LRLDEAREGQMSRLRSQLVRGDTLAELAREFELGECLVLGEGELKSGGHRRDSILADAVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YL+ G++ V ++ R A+ +D K+ LQE+ A+ PEY+V Sbjct: 118 AIIGAIYLESGLDTCRERVLAWYGDRLDAISLDTSAKDPKSRLQEYLQAQRQPLPEYRVV 177 Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLK 221 G H FT+ ++ Q S+R AE+ AAA +LK Sbjct: 178 EVGGEGHAQVFTIECHVAIAKQSTQAQASSRREAEKQAAAAMLK 221 >gi|319774962|ref|YP_004137450.1| Ribonuclease III [Haemophilus influenzae F3047] gi|329123136|ref|ZP_08251706.1| ribonuclease III [Haemophilus aegyptius ATCC 11116] gi|317449553|emb|CBY85758.1| Ribonuclease III [Haemophilus influenzae F3047] gi|327471691|gb|EGF17133.1| ribonuclease III [Haemophilus aegyptius ATCC 11116] Length = 227 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 120/222 (54%), Gaps = 15/222 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++IGY F + LL++ALTH S + + E RLEFLGD IL I+ L++ F E Sbjct: 7 LERKIGYCFNDIVLLKQALTHRSAATQHNE---RLEFLGDSILNFTIAEALYHQFPRCNE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +LV T + +AR+ +L ++ + S K+ SI AD VE++I A+ L Sbjct: 64 GELSRMRATLVRESTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSL 123 Query: 129 DGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D G+ V T V + W Q+ L K G ++DAKT LQE+ K P Y+V G H Sbjct: 124 DQGLAVT-TQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVINIQGEAH 182 Query: 186 DPRFTVVVEISGLAP------AQGMDCSKRAAEQVAAAEVLK 221 FTV ++ A+G S+R AEQ AA ++LK Sbjct: 183 CQIFTVKCKVKSAGKIDRTFVAKG--SSRRKAEQAAAEQILK 222 >gi|319896432|ref|YP_004134625.1| ribonuclease iii [Haemophilus influenzae F3031] gi|317431934|emb|CBY80282.1| Ribonuclease III [Haemophilus influenzae F3031] Length = 227 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 120/222 (54%), Gaps = 15/222 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++IGY F + LL++ALTH S + + E RLEFLGD IL I+ L++ F E Sbjct: 7 LERKIGYCFNDIVLLKQALTHRSAATQHNE---RLEFLGDSILNFTIAEALYHQFPRCNE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +LV T + +AR+ +L ++ + S K+ SI AD VE++I A+ L Sbjct: 64 GELSRMRATLVRESTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSL 123 Query: 129 DGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D G+ V T V + W Q+ L K G ++DAKT LQE+ K P Y+V G H Sbjct: 124 DQGLAVT-TQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGEAH 182 Query: 186 DPRFTVVVEISGLAP------AQGMDCSKRAAEQVAAAEVLK 221 FTV ++ A+G S+R AEQ AA ++LK Sbjct: 183 CQIFTVECKVKSAGKIDRTFVAKG--SSRRKAEQAAAEQILK 222 >gi|260220751|emb|CBA28629.1| Ribonuclease 3 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 224 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 121/219 (55%), Gaps = 8/219 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L++R+ + F+N SLL +ALTH S S + YERLEFLGD +LGL IS LL++ + Sbjct: 2 TALQQRLQHQFSNVSLLSRALTHRSFSADH---YERLEFLGDSVLGLAISDLLYSRLGNL 58 Query: 67 KEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS VR N LV ET Q+A +L L +++ + SI AD +E++I A Sbjct: 59 PEGDLSRVRAN-LVRQETLHQLALKLGLPDVLKLGEGEMRSGGPKRASILADALEAIIGA 117 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD G A V + ++ + +DAKTELQEW + P Y V G Sbjct: 118 VYLDAGFAKAQALVHRLFEAVEINPQMQAIGKDAKTELQEWLQGRKMKLPLYTVVGTIGA 177 Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221 H F V E+ L ++ G+ S+RA EQ AAA +L+ Sbjct: 178 AHKQSFDVECEVPELRLSERGIGGSRRAGEQAAAAAMLQ 216 >gi|184159116|ref|YP_001847455.1| ribonuclease III [Acinetobacter baumannii ACICU] gi|183210710|gb|ACC58108.1| dsRNA-specific ribonuclease [Acinetobacter baumannii ACICU] Length = 234 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 115/213 (53%), Gaps = 5/213 (2%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 RIGY F LL+ ALTH S+SH Y +YERLEFLGD +LG++I+ L++ + EG L Sbjct: 20 RIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPHENEGRL 77 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + +LV E ++A +L L+ + +S+ K SI AD VE++I A+YLD Sbjct: 78 TRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSS 137 Query: 132 -IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 + + V K++ ++ +D K+ LQE+ A+ P Y+V G Sbjct: 138 DLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQH 197 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V + GL+ G S+R AEQ AAAE+LK Sbjct: 198 FKVECLVDGLSKIHGEGSSRRFAEQAAAAEILK 230 >gi|298381809|ref|ZP_06991408.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli FVEC1302] gi|298279251|gb|EFI20765.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli FVEC1302] Length = 215 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 120/217 (55%), Gaps = 6/217 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L++ F E Sbjct: 1 LQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALYHRFPRVDE 57 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++ARE +L +R+ K SI AD VE+LI ++L Sbjct: 58 GDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFL 117 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D I+ + +++ R + G ++D KT LQE+ + P Y V G HD Sbjct: 118 DSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHD 177 Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 FT+ ++SGL+ P G S+R AEQ AA + LK+ Sbjct: 178 QEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 214 >gi|332525373|ref|ZP_08401536.1| ribonuclease III [Rubrivivax benzoatilyticus JA2] gi|332108645|gb|EGJ09869.1| ribonuclease III [Rubrivivax benzoatilyticus JA2] Length = 241 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 121/220 (55%), Gaps = 6/220 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 R+ L++R+G+ F +L+ +ALTH S E ERLEFLGD +L +S LL+ F Sbjct: 4 RHDALQQRLGHRFTRTALMTRALTHRSWG---AEHNERLEFLGDSVLNCAVSALLYERFS 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+L+ LV ++ +VA L L+ +R+S + + SI AD VE+LI Sbjct: 61 GSDEGDLTRVRAHLVREDSLHRVALTLGLSEVLRMSEGEMRGGGAQRPSILADAVEALIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++LDGG + A V + + + A ++ + +DAKTELQEW A+ P Y++ G Sbjct: 121 AIFLDGGFDPALATVRRLFGEVIAATEADAWSKDAKTELQEWLQARRLPVPAYRIVATRG 180 Query: 183 PDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221 H F V ++ L A+ G S+R AEQ AA +L+ Sbjct: 181 EKHAQTFEVECAVATLGLAERGEGRSRRTAEQEAARRLLE 220 >gi|54297783|ref|YP_124152.1| ribonuclease III [Legionella pneumophila str. Paris] gi|148359410|ref|YP_001250617.1| ribonuclease III [Legionella pneumophila str. Corby] gi|296107456|ref|YP_003619157.1| ribonuclease III [Legionella pneumophila 2300/99 Alcoy] gi|81370372|sp|Q5X446|RNC_LEGPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043325|sp|A5ID21|RNC_LEGPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|53751568|emb|CAH12986.1| hypothetical protein lpp1834 [Legionella pneumophila str. Paris] gi|148281183|gb|ABQ55271.1| ribonuclease III [Legionella pneumophila str. Corby] gi|295649358|gb|ADG25205.1| ribonuclease III [Legionella pneumophila 2300/99 Alcoy] Length = 224 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/217 (36%), Positives = 119/217 (54%), Gaps = 6/217 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +R+ Y F N + L++ALTH S ++YER EFLGD IL +I+ LFN F E Sbjct: 8 LCRRLNYHFNNIAYLKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFNRFPLHSE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS + LV E +++ARE+ L ++ + + TSI AD +E+++AA+YL Sbjct: 65 GQLSRLRSFLVKGEMLAEIAREIGLGDYLFLGQGELRSGGFRRTSILADALEAILAAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 DGG+ A + + R +DAKT+LQE+ A PEY +T G +H Sbjct: 125 DGGMTAAKQIILMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKIEGDEHA 184 Query: 187 PRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKR 222 F V I G++ A G ++R AEQ+AA +L++ Sbjct: 185 QIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLEQ 221 >gi|292571710|gb|ADE29625.1| Ribonuclease III [Rickettsia prowazekii Rp22] Length = 225 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 5/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 + LE +GY+F N+ LL +AL+H S+ + Y + YERLEFLGD +L LLI+ +LF Sbjct: 4 FEKLETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLITEILFK 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +F++ KEG L+ + LV ET V +L L +I ++ + + E+ Sbjct: 64 NFENYKEGNLAKIRSYLVCKETICIVGTKLALKDYIIMTHGEEVAGGRDNPNNIENATEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 LIAA+YLD IE+ ++K W + D KT LQEWA A P Y++ R Sbjct: 124 LIAAIYLDSNIEITHNIIEKLWAEFMKVQNFTDYDPKTALQEWAQANSHHLPIYRLIKRE 183 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G H FTV+V++ S + AE+ AA +L R Sbjct: 184 GAAHSSIFTVLVKVKDYEQT-CTGYSIKEAEKKAARSLLHR 223 >gi|217970713|ref|YP_002355947.1| ribonuclease III [Thauera sp. MZ1T] gi|217508040|gb|ACK55051.1| ribonuclease III [Thauera sp. MZ1T] Length = 222 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 112/211 (53%), Gaps = 6/211 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ R+G+AF++ LL++ALTH S Q + ER EFLGD +L ++S LF F +E Sbjct: 5 LQARLGHAFSDVRLLQEALTHRSFG---QPNNERFEFLGDAVLDCVVSIALFGRFGELRE 61 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS SLV +T ++A EL+L +R+ K S SI AD +E+L AA+YL Sbjct: 62 GELSRVRASLVRQDTLHRLALELELGDCLRLGEGELKSGGSRRPSILADALEALFAAVYL 121 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G E A +D+ + + K +D KT LQEW A+ P Y + G H Sbjct: 122 DAGFEAAKGVIDRLYAPLIAEVDPCKPSKDPKTALQEWLQARRIPVPSYTMVEIVGEAHA 181 Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216 F V EI LA G S+R AEQ +A Sbjct: 182 QEFEVACEIPKLAVRTLGRGPSRRIAEQQSA 212 >gi|212710663|ref|ZP_03318791.1| hypothetical protein PROVALCAL_01729 [Providencia alcalifaciens DSM 30120] gi|212686744|gb|EEB46272.1| hypothetical protein PROVALCAL_01729 [Providencia alcalifaciens DSM 30120] Length = 226 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L++++GY F LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPSLLEKLQRKLGYTFKQNDLLIQALTHRSASSKHNE---RLEFLGDSILSFVIANDLY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIEKIILAWYKARLDEISPGDKQKDPKTRLQEYLQGRHLPLPNYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 G HD FT+ ++SG+ P G+ S+R AEQ AA + LK Sbjct: 178 LVKGEAHDQEFTIHCQVSGIEEPIHGIGSSRRKAEQAAAEQALK 221 >gi|291530279|emb|CBK95864.1| RNAse III [Eubacterium siraeum 70/3] Length = 226 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 120/228 (52%), Gaps = 11/228 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDS 65 + LE+ IGY F N LL++ALTHSS ++ + S ERLEFLGD +L +++S LF + + Sbjct: 2 TELEQIIGYTFKNPELLKEALTHSSYTNGKHLRSNERLEFLGDSVLSIVVSEHLFENLTN 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ S+V AR++DL +I + SI AD E+LIAA Sbjct: 62 LPEGQLTKIRASVVCENALYPFARKIDLGKYIFLGKGEEHTGGRDRHSILADAFEALIAA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQ-RALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTF---- 179 +YLDGG E A F+ + L +GKF D KT LQE PE +VT+ Sbjct: 122 IYLDGGFEAARNFILPFIPPLDKLSTGKFLLGDYKTVLQEIIQQ----NPEERVTYEISD 177 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 SG H+ +FT V ++G G SK+ AEQ AA E + G T Sbjct: 178 ESGQAHNKQFTANVLLNGQIIGTGKGKSKKEAEQSAAKEAISLMGYET 225 >gi|160900693|ref|YP_001566275.1| ribonuclease III [Delftia acidovorans SPH-1] gi|238687167|sp|A9BNJ5|RNC_DELAS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|160366277|gb|ABX37890.1| Ribonuclease III [Delftia acidovorans SPH-1] Length = 227 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 87/220 (39%), Positives = 119/220 (54%), Gaps = 10/220 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L+ R+ + FA +LL++A+TH S S ++ ERLEFLGD +L L IS+LL+ S Sbjct: 6 NALQLRLQHQFAEPALLQRAVTHRSFS---ADNNERLEFLGDSVLNLAISSLLYQRLSSM 62 Query: 67 KEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS VR N LV T Q+A L L +R+ K SI AD VE+LI A Sbjct: 63 PEGDLSRVRAN-LVKEGTLHQIALRLQLPDLLRLGEGESKSGGKQRPSILADAVEALIGA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLD G AG V + + + R +DAKT LQEW + P+Y+V +G Sbjct: 122 VYLDAGY-AAGEKVVHHLFEGVDINPHMRAAEKDAKTALQEWLQGRRMKLPQYEVVATTG 180 Query: 183 PDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 H F V I+ L A+G S+RAAEQ AA +L+ Sbjct: 181 AAHRQTFEVACAIAELQLQARGTGASRRAAEQTAATAMLE 220 >gi|254468787|ref|ZP_05082193.1| ribonuclease III [beta proteobacterium KB13] gi|207087597|gb|EDZ64880.1| ribonuclease III [beta proteobacterium KB13] Length = 228 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 117/220 (53%), Gaps = 6/220 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L LE + Y F + +LL+K+LTH S E+ ERLEFLGD IL I+ LF Sbjct: 1 MDDLIVKQLEDLLQYKFKDINLLQKSLTHRSFDG---ENNERLEFLGDSILNFTIAEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + EG+LS SLV + T +++A ++ L FI + K SI AD E Sbjct: 58 IKFPNIPEGDLSRLRASLVKSGTLAEIAVKIKLGDFIFLGEGELKSAGWRRPSILADTFE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I ALYLDGG+ A TF+ +Y++ + K +D KT LQE +K + P+Y+V Sbjct: 118 AIIGALYLDGGLRPAQTFIHQYFQDWLSEINPAKVDKDPKTSLQELLQSKKLMLPKYEVA 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAA 217 G H F V I+ L+ + S+RAAEQ AA+ Sbjct: 178 DIKGEAHAQEFIVKCNIAQLSITTEASGSSRRAAEQEAAS 217 >gi|225570731|ref|ZP_03779754.1| hypothetical protein CLOHYLEM_06832 [Clostridium hylemonae DSM 15053] gi|225160474|gb|EEG73093.1| hypothetical protein CLOHYLEM_06832 [Clostridium hylemonae DSM 15053] Length = 231 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 83/213 (38%), Positives = 110/213 (51%), Gaps = 7/213 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-----HSYQESYERLEFLGDRILGLLISTLLFNHF 63 LEKRIGY F LL+KA+ HSS + H Y E ERLEFLGD +L L+ S LF Sbjct: 8 LEKRIGYTFKEFGLLKKAMMHSSYANEQHLHKY-ECNERLEFLGDAVLELVSSEFLFYEH 66 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EGEL+ S+V + AREL + F+ + SI +D +E+LI Sbjct: 67 AKMPEGELTKTRASMVCEPALAFCARELQIGDFLLLGKGEDATGGRKRESITSDAMEALI 126 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+Y+DGG A F++++ + L++ K D+KT LQE A F Y + GP Sbjct: 127 GAIYIDGGFANAKEFIERFI-LKDLENRKLFFDSKTILQEIVQANFKDAITYHLIGEEGP 185 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 DHD F V V I G +K+AAEQ AA Sbjct: 186 DHDKSFLVAVHIGEDEYGIGRGRTKKAAEQEAA 218 >gi|147678073|ref|YP_001212288.1| ribonuclease III [Pelotomaculum thermopropionicum SI] gi|189043329|sp|A5D1H6|RNC_PELTS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|146274170|dbj|BAF59919.1| dsRNA-specific ribonuclease [Pelotomaculum thermopropionicum SI] Length = 241 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + + L+ R+G A+ + LL +ALTHSS ++ + E+ +RLEFLGD +L L +S L+ Sbjct: 7 KLTLLKNRLGIAWRDEGLLTRALTHSSFTYENRQNGLENNQRLEFLGDAVLELAVSDYLY 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+L+ S+V + ++VAREL+L + + + + SI AD E Sbjct: 67 RSKPEMDEGDLTKLRASVVCEPSLARVARELELGTCLYMGKGEERSGGRDRPSILADAFE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +L+ A+YLD G+E A KY + G+ RD KTELQE + G +Y + Sbjct: 127 ALLGAVYLDQGLEKAAGLAIKYLAPLIGDVLEGRLERDYKTELQELVQQRGGEQVQYVIL 186 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH FT V G+ QG SK+ AEQ AA + L + Sbjct: 187 KEEGPDHHKSFTAGVLYRGVLVGQGTGRSKKEAEQQAAKKALMK 230 >gi|319779260|ref|YP_004130173.1| Ribonuclease III [Taylorella equigenitalis MCE9] gi|317109284|gb|ADU92030.1| Ribonuclease III [Taylorella equigenitalis MCE9] Length = 251 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 123/223 (55%), Gaps = 10/223 (4%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++ Y+F + LL +ALTH S S ++ E RLEFLGD IL +++LLF Sbjct: 1 MKLDELQKKLNYSFKDIKLLNRALTHRSFSSTHNE---RLEFLGDSILNFSVASLLFKKL 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ S V+ +T +++A L L I++ K SI AD VE++ Sbjct: 58 KDQAEGDLTRIRASYVNQDTLAKIANNLKLQDLIKLGEGELKSGGFKRPSILADAVEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFR 180 A+Y+D IE A V+ + + +K+ F RD+KT LQE+ AK P YKV Sbjct: 118 GAIYIDSNIEQAQKVVESIY-EPLMKNVDFSTVGRDSKTLLQEFVQAKRVPLPSYKVLNI 176 Query: 181 SGPDHDPRFTV--VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +G HD F V VE+ ++ AQ + S+R+AEQ AA VL+ Sbjct: 177 TGAAHDQEFEVECTVELFDVS-AQAVGASRRSAEQAAATLVLE 218 >gi|157964181|ref|YP_001499005.1| ribonuclease III [Rickettsia massiliae MTU5] gi|189043342|sp|A8F0M2|RNC_RICM5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157843957|gb|ABV84458.1| Ribonuclease III [Rickettsia massiliae MTU5] Length = 227 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 120/223 (53%), Gaps = 9/223 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQES--YERLEFLGDRILGLLISTLLFN 61 + TLEK + Y+F N+ LL +AL+H S+ H Y++ YERLEFLGD +L L+I+ +LF Sbjct: 4 FETLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEILFR 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA--DVV 119 +F + EG L+ + LV ET V +L L ++I ++ ++V ++ + Sbjct: 64 NFANYNEGHLAKIRSYLVCKETICMVGAKLTLKNYIIMTHG--EEVAGGRDNLNNIENAT 121 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+LIAA+YLD IE ++K W + D KT LQEWA A P Y++ Sbjct: 122 EALIAAIYLDSNIETTYDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIK 181 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 R G H FTV+V++ G + + AE+ AA +L R Sbjct: 182 REGASHSSTFTVLVKVKDYEQT-GTGHAIKEAEKNAARSLLHR 223 >gi|307132118|ref|YP_003884134.1| RNase III [Dickeya dadantii 3937] gi|306529647|gb|ADM99577.1| RNase III [Dickeya dadantii 3937] Length = 226 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+K++GY F LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQKKLGYTFQQYDLLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSNIQTVERLILQWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SG + P G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRKAEQAAAEQALKK 222 >gi|331005223|ref|ZP_08328616.1| Ribonuclease III [gamma proteobacterium IMCC1989] gi|330420966|gb|EGG95239.1| Ribonuclease III [gamma proteobacterium IMCC1989] Length = 217 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 85/211 (40%), Positives = 114/211 (54%), Gaps = 6/211 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+KRI Y F++ SLLE ALTH S S + + ERLEFLGD +LG+ IS LF F KE Sbjct: 10 LQKRIDYQFSDESLLETALTHRSFSST---NNERLEFLGDSLLGVTISQQLFEQFPDVKE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS + + LV T + +ARE L+ ++ + S K SI AD VE++I A++L Sbjct: 67 GILSRQRSRLVKGVTLAALAREFSLSDYLIMGSGELKSGGFRRDSILADTVEAIIGAIFL 126 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D I+ + +++ R L S +D KT LQE +K P Y V G H+ Sbjct: 127 DSDIQQCQKVILQWFHDRLQGLSSHDQLKDPKTRLQELLQSKKKPLPTYTVANIEGASHE 186 Query: 187 PRFTVVVEISGLAPA-QGMDCSKRAAEQVAA 216 RFTV I+ L A S+R AEQ AA Sbjct: 187 QRFTVDCGIALLDTAVTATAGSRRQAEQQAA 217 >gi|325661266|ref|ZP_08149893.1| ribonuclease III [Lachnospiraceae bacterium 4_1_37FAA] gi|325472773|gb|EGC75984.1| ribonuclease III [Lachnospiraceae bacterium 4_1_37FAA] Length = 259 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 81/216 (37%), Positives = 112/216 (51%), Gaps = 5/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + K+IGY F + LL+KA+ HSS ++ Q+ ERLEFLGD +L L S LF Sbjct: 37 IRKKIGYTFQKKELLQKAMMHSSYTNEKHMKKQDCNERLEFLGDAVLELTTSEALFFDNP 96 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S EGEL+ S+V + VA+EL L S++ + SI +D VE+LI Sbjct: 97 SMPEGELTKTRASIVCEPALAFVAKELMLGSYLLLGKGEEATGGRQRDSITSDAVEALIG 156 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG A F+ K+ L++ K D+KT LQE AKF Y + GPD Sbjct: 157 AIYLDGGFASAKEFIQKFI-LSDLENKKLFYDSKTILQEMVQAKFTENVRYVLEKEEGPD 215 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H+ FT I G +K+A+EQ AA + + Sbjct: 216 HNKSFTTSAYIGEECYGTGSGRTKKASEQEAAYQTI 251 >gi|209695943|ref|YP_002263873.1| ribonuclease III [Aliivibrio salmonicida LFI1238] gi|208009896|emb|CAQ80209.1| ribonuclease III (RNase III) [Aliivibrio salmonicida LFI1238] Length = 223 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 74/211 (35%), Positives = 114/211 (54%), Gaps = 6/211 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++IGY F + L+ ALTH S + ++ E RLEFLGD IL +++ L++ F E Sbjct: 8 LERKIGYKFNDEGFLKLALTHRSANGTHNE---RLEFLGDSILSFVVADELYHRFPKVDE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++ RE +L ++ + K SI AD VE++I +YL Sbjct: 65 GDMSRMRATLVRGHTLAELGREFELGDYLFLGPGELKSGGFRRDSILADAVEAIIGGIYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D EV + ++K R +++ G ++D KT LQE+ + P Y VT G H+ Sbjct: 125 DSDTEVIRRIILAWYKTRLDSIEPGISQKDPKTRLQEYLQGRRKPLPTYTVTKIKGEAHN 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAA 216 FT+ ++GL P G S+R AEQ AA Sbjct: 185 QEFTIECIVAGLDKPVIGKGSSRRKAEQSAA 215 >gi|152989964|ref|YP_001355686.1| ribonuclease III [Nitratiruptor sp. SB155-2] gi|189043328|sp|A6Q1H0|RNC_NITSB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|151421825|dbj|BAF69329.1| ribonuclease III [Nitratiruptor sp. SB155-2] Length = 226 Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 69/189 (36%), Positives = 110/189 (58%), Gaps = 8/189 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 EK++GY+F ++ LL++ALTH S ERLEFLGD +L L++ LF F A E Sbjct: 7 FEKKLGYSFEDKKLLKEALTHKSYKSPVNN--ERLEFLGDAVLDLVVGEYLFKKFPKANE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS SLV+ E +++A++LD+ +I +S + S+ ++ E+++ A+YL Sbjct: 65 GELSKLRASLVNEEGFAKLAQKLDIGKYIFISQAEENNQGRTKPSLLSNAFEAVMGAIYL 124 Query: 129 DGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G+ E++ +++ + + L S +D KT LQE+ A +G+TP YK+ SGPD Sbjct: 125 EKGLEKVRELSLKLLEEAYPKIDLDS--LFKDFKTALQEFTQAHYGITPTYKLLGSSGPD 182 Query: 185 HDPRFTVVV 193 H F V V Sbjct: 183 HKKEFEVAV 191 >gi|302670933|ref|YP_003830893.1| ribonuclease III Rnc [Butyrivibrio proteoclasticus B316] gi|302395406|gb|ADL34311.1| ribonuclease III Rnc [Butyrivibrio proteoclasticus B316] Length = 230 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 81/217 (37%), Positives = 116/217 (53%), Gaps = 5/217 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ IGY F N LL +ALTHSS + + + YERLEFLGD IL ++ S LF + Sbjct: 9 NFQQVIGYKFKNIDLLIQALTHSSFVNEQKINKKPDYERLEFLGDAILEMVSSEYLFKKY 68 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 KEGE+S SLV + A ++L +I++ SI ADV+E++I Sbjct: 69 PDKKEGEMSKIRASLVCEPALAFCAEHIELKKYIQLGKGEELTGGRNKESIIADVMEAVI 128 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AL+LDGG++ + F+D Y A F D+K+ LQE+ A +Y++ SGP Sbjct: 129 GALFLDGGLQESKRFIDTYVLTNADSMAMF-NDSKSLLQEFVQAGGLGQIKYEICGESGP 187 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +HD F V V I +G +K+AAEQ AA + L Sbjct: 188 EHDKIFDVRVWIGDKNMGEGTGKTKKAAEQKAAYQAL 224 >gi|262373078|ref|ZP_06066357.1| ribonuclease III [Acinetobacter junii SH205] gi|262313103|gb|EEY94188.1| ribonuclease III [Acinetobacter junii SH205] Length = 232 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 122/223 (54%), Gaps = 5/223 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L + L+ RIG+ F LL+ ALTH S+SH + +YERLEFLGD +LG++I+ L++ Sbjct: 8 NKLNDARLQNRIGHQFQQFDLLKLALTHRSVSHKH--NYERLEFLGDSLLGMIIANYLYH 65 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ +LV E ++A +L L+ + +S+ K SI AD VE+ Sbjct: 66 TYPKENEGRLTRMRATLVRQEALGKIANDLQLSRSLILSTGELKSGGHHRESILADTVEA 125 Query: 122 LIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +I A+YLD + + + V K+++ ++ +D K+ LQE+ A+ P Y+V Sbjct: 126 IIGAIYLDSNDLNLLQSIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVV 185 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 G + F V + G+ G S+R AEQ AAAE+LK Sbjct: 186 DIQGDAPNQHFKVECNVEGMPKFIGEGSSRRFAEQTAAAEILK 228 >gi|109899454|ref|YP_662709.1| ribonuclease III [Pseudoalteromonas atlantica T6c] gi|109701735|gb|ABG41655.1| RNAse III [Pseudoalteromonas atlantica T6c] Length = 227 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 116/219 (52%), Gaps = 6/219 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y L ++GY F + L ALTH S+ ++ E RLEFLGD +LGL+I+ LF F Sbjct: 7 YKPLYTKLGYEFQDPKNLTVALTHRSVGANHNE---RLEFLGDAVLGLVIAKALFERFPK 63 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG L+ +SLV +T ++VARE L + + K SI AD VE++I A Sbjct: 64 QPEGNLTRMRSSLVKGDTLAEVAREFSLGDLLLLGPGELKSGGHRRDSILADAVEAIIGA 123 Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +Y + G++ + ++ +R AL +D KT LQE+ + PEY+V SG Sbjct: 124 IYQEVGMQGCEPLILAWFAKRIDALNPDATPKDDKTRLQEYLQGRQLPLPEYEVIDISGK 183 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 HD FTV +SGL+ P G S+R AEQ A + L+ Sbjct: 184 SHDQTFTVQCTVSGLSKPIIGRGKSRRRAEQRTAKQALE 222 >gi|332296458|ref|YP_004438381.1| Ribonuclease 3 [Thermodesulfobium narugense DSM 14796] gi|332179561|gb|AEE15250.1| Ribonuclease 3 [Thermodesulfobium narugense DSM 14796] Length = 228 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 120/219 (54%), Gaps = 9/219 (4%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFN 61 + S LE+ +GY F N+ L +LTHSS S+++ E +ERLEFLGD +L L++S LF Sbjct: 5 INLSKLEEDLGYVFTNKKWLMTSLTHSSYSYNHPEVKDFERLEFLGDAVLKLVVSHKLFV 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG++S LVS + +++A++L+L +++ + S R + SI + E+ Sbjct: 65 LYPEMSEGDMSKLRAYLVSDKHLTKIAKKLNLQNYLLIGSSER----TIKDSILSASFEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 ++ A+Y+D ++ +DK +K ++ D+KT LQE + FGV PEYKV Sbjct: 121 ILGAVYMDSSLKQCYKIIDKLMN---IKIEEYEEDSKTVLQELTQSLFGVLPEYKVIDVR 177 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP H P F V + I SK+ A+ AA + L Sbjct: 178 GPSHSPIFEVQLSIDNKFFYTATGSSKKQAQSEAAKKAL 216 >gi|189043297|sp|A8Z6F6|RNC_CAMC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|158604915|gb|ABW74738.1| ribonuclease III [Campylobacter concisus 13826] Length = 223 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 70/217 (32%), Positives = 120/217 (55%), Gaps = 8/217 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E+ +GY F LLE+ALTH S + + ERLEFLGD ++ LL++ LF F EG Sbjct: 8 ERNLGYKFKKSELLEEALTHKSTKQAL--NNERLEFLGDAVMDLLVAEYLFKKFSKIAEG 65 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 ++S +LV+ ++ + +AR L + F+R+S + SI +D E+++ A+YL+ Sbjct: 66 DMSKLRAALVNEKSFANMARRLKMGEFLRLSQAEENNGGREKDSILSDAFEAVMGAIYLE 125 Query: 130 GGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 G+ E++ + ++ + Q + +D KT LQE A GV P Y++ GPDH Sbjct: 126 AGLLKVREISISLLELCYPQ--IDFAHLEKDYKTALQEVTQATLGVIPTYELIGSFGPDH 183 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F + + ++G ++ + SK+ A+Q+AA L++ Sbjct: 184 KKEFEIALLLNGKEISRAVGSSKKQAQQLAAKIALEK 220 >gi|162449970|ref|YP_001612337.1| ribonuclease III [Sorangium cellulosum 'So ce 56'] gi|161160552|emb|CAN91857.1| ribonuclease III [Sorangium cellulosum 'So ce 56'] Length = 275 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 76/194 (39%), Positives = 105/194 (54%), Gaps = 7/194 (3%) Query: 23 LEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LE+ALTH S S+ + +RLEFLGD +LGL ++ LL F A+EGELS+ ++L Sbjct: 21 LEEALTHPSFSNEQRGGRRVDNQRLEFLGDAVLGLCVTELLMERFPGAREGELSMMRSAL 80 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 V+ + + AR ++L + +RV T++ AD E+L+AALYLD G E A Sbjct: 81 VNTDALAAWARGIELGAALRVGRGAEVAGERDQTNVLADATEALVAALYLDRGFESARAL 140 Query: 139 VDKYWKQR--ALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 K L SG RDAK+ELQE A+ +P Y++ GPDHD F V VE+ Sbjct: 141 SRKIAASPLAQLASGSLLGRDAKSELQERVQARGAASPRYRLMGTEGPDHDRAFLVAVEV 200 Query: 196 SGLAPAQGMDCSKR 209 G G SK+ Sbjct: 201 DGQVIGTGRGRSKK 214 >gi|219685563|ref|ZP_03540380.1| ribonuclease III [Borrelia garinii Far04] gi|219672962|gb|EED29984.1| ribonuclease III [Borrelia garinii Far04] Length = 246 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 78/212 (36%), Positives = 114/212 (53%), Gaps = 9/212 (4%) Query: 17 FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F N LL AL+HSS S+ + + ERLEFLGD +L L+I+ L+ + + EGELS Sbjct: 30 FNNFDLLNTALSHSSYSNELDQKADNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSK 89 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + +VS ++ S VARE++L S+I + + I AD +E+ + A+YLD G Sbjct: 90 ARSYIVSEDSLSSVAREIELGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFS 149 Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 +A FV D Y + G F +D K+ LQE+ K+ ++P YK+ GPDHD F Sbjct: 150 MATEFVVGLFDMYIR-LMFNRGDF-KDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVF 207 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V + + + G SK+ AE AA LK Sbjct: 208 CVELYVGEKFISNGKGKSKKEAEMRAAEVALK 239 >gi|255281054|ref|ZP_05345609.1| ribonuclease III [Bryantella formatexigens DSM 14469] gi|255268502|gb|EET61707.1| ribonuclease III [Bryantella formatexigens DSM 14469] Length = 230 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 119/215 (55%), Gaps = 6/215 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNH 62 S LE+ GY+F ++ LLE AL HSS ++ +++ + ERLEFLGD +L L S L+ H Sbjct: 6 SELEQMTGYSFKDKELLENALRHSSYANEHKKYHLKDNERLEFLGDAVLELSSSEYLYRH 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + KEGE++ S+V T +Q A ++L SF+R+ + S+ +D +E+L Sbjct: 66 YPKMKEGEMTKLRASIVCEPTLAQCAAAIELGSFLRLGRGEEQTGGRHRDSVVSDAMEAL 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF-GVTPEYKVTFRS 181 I A++LDGG A FV+++ ++ K D+KT LQE + + G Y + Sbjct: 126 IGAIFLDGGFTSAKEFVNRFILN-GVEHKKLFFDSKTILQEIVQSSYKGEAMSYHLLREE 184 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GP+HD F V + I +G +K++AEQ AA Sbjct: 185 GPEHDKTFVVQLFIGDKGFEEGRGRTKKSAEQEAA 219 >gi|120555160|ref|YP_959511.1| ribonuclease III [Marinobacter aquaeolei VT8] gi|120325009|gb|ABM19324.1| RNAse III [Marinobacter aquaeolei VT8] Length = 229 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 116/220 (52%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++RIGY F L ALTH S + ++ ERLEFLGD I+ ++I+ L+ HF+ A+E Sbjct: 10 LQRRIGYQFKEPERLLLALTHRSFGN---QNNERLEFLGDSIVNMVIAEYLYLHFEKARE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +V T +++ RE L ++R+ S K SI AD VES+I A+YL Sbjct: 67 GQLSRLRARMVKGVTLAEIGREFQLGQYLRLGSGELKSGGFRRESILADAVESIIGAIYL 126 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D V ++++QR L ++D KT LQE+ ++ P Y+V G H+ Sbjct: 127 DSDFHTCRAQVLRWFEQRLANLDIQDTQKDPKTRLQEYLQSRQFPLPRYEVISVDGEAHN 186 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 F V + L G S+R AEQ AA LK+ G+ Sbjct: 187 QTFHVSCALPSLDRKTTGTGSSRRVAEQQAARNALKQLGV 226 >gi|32490945|ref|NP_871199.1| hypothetical protein WGLp196 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30173145|sp|Q8D305|RNC_WIGBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|25166151|dbj|BAC24342.1| rnc [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 226 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 119/223 (53%), Gaps = 6/223 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L ++ L+K++GY F N +L++ALTH S S ++ ERLEFLGD IL +IS L+ Sbjct: 1 MKNLFFNKLQKKMGYLFHNNIILKQALTHRSFS---SKNNERLEFLGDSILNYIISDALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N+F + EG+LS + LV T +++ARE L ++ + K SI ++ +E Sbjct: 58 NNFTNIPEGKLSQMRSYLVRGNTLAEIAREFCLGDYLILGIGEVKTGGKNRDSILSNAME 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I ++LD I V ++K R ++ ++D KT LQE+ P+Y + Sbjct: 118 AIIGGIFLDSNINKTHEIVISWYKNRLYSMSLKNLKKDPKTRLQEYLQGNKFSLPQYYIK 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220 +G H+ FT+ I L + G ++R AEQ AA + L Sbjct: 178 NITGESHNQEFTICCFIDDLKKSVIGYGKTRRKAEQSAAKQAL 220 >gi|330828482|ref|YP_004391434.1| ribonuclease III [Aeromonas veronii B565] gi|328803618|gb|AEB48817.1| Ribonuclease III [Aeromonas veronii B565] Length = 223 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 112/209 (53%), Gaps = 6/209 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ + L+ R+G+ FA+ LL +ALTH S + E RLEFLGD IL L+I+ LF+ F Sbjct: 3 IKMNRLQSRLGHVFADLELLTRALTHRSAGSRHNE---RLEFLGDSILSLVIADDLFHRF 59 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EG+LS +LV +T +++ RE DL + + K SI AD VE++I Sbjct: 60 PQAAEGDLSRMRATLVREKTLAELGREFDLGDHLILGPGELKSGGFRRESILADTVEAVI 119 Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD +E T + ++ R +K G ++D KT LQE P Y VT Sbjct: 120 GAVYLDTNLETVRTLLLSWYASRLEEIKPGIEQKDPKTRLQEILQGSRKSLPTYTVTNVK 179 Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKR 209 G H+ FTV ++ GL P G+ S+R Sbjct: 180 GEAHNQEFTVQCDVEGLDGPLVGVGTSRR 208 >gi|313896309|ref|ZP_07829862.1| ribonuclease III [Selenomonas sp. oral taxon 137 str. F0430] gi|320529287|ref|ZP_08030377.1| ribonuclease III [Selenomonas artemidis F0399] gi|312975108|gb|EFR40570.1| ribonuclease III [Selenomonas sp. oral taxon 137 str. F0430] gi|320138461|gb|EFW30353.1| ribonuclease III [Selenomonas artemidis F0399] Length = 238 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 129/233 (55%), Gaps = 10/233 (4%) Query: 1 MSALRYSTLEK---RIGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLL 54 +S R + LE+ +G AF+N +LL++ALTH S ++ ++S ERLEFLGD +L L Sbjct: 5 LSPARRAELERLAAHMGVAFSNIALLDEALTHPSYANESRDSIPHNERLEFLGDAVLELA 64 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTS 113 ST L+ HF EGEL+ SLV ++T +++AR L L +R+ +LR + Sbjct: 65 SSTYLYKHFPQCSEGELTKMRASLVQSDTLARLARRLHLGRHLRLGHGELRGGGADRQNN 124 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171 ++ +V E++I A+YLD G E A +V ++ + R D KT LQE + Sbjct: 125 LE-NVFEAVIGAVYLDRGWESARDYVCTQLVPEIGNVQPAQVRCDYKTTLQEHVQKDRHM 183 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + Y++ SGPDHD RFT V + G +G SK+ AEQ AAA L + G Sbjct: 184 SVAYELVGESGPDHDKRFTTRVLVGGETLGEGTGPSKKKAEQQAAAHALSKLG 236 >gi|110834492|ref|YP_693351.1| ribonuclease III [Alcanivorax borkumensis SK2] gi|123345468|sp|Q0VP19|RNC_ALCBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|110647603|emb|CAL17079.1| ribonuclease III [Alcanivorax borkumensis SK2] Length = 228 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 116/220 (52%), Gaps = 9/220 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L R+GY F + SLLE ALTH S+S +YERLEFLGD LG +IS LF F A Sbjct: 6 NRLMARLGYQFQDLSLLELALTHRSVSR--HRNYERLEFLGDAQLGQIISVALFEQFPEA 63 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ SLV +T + VAREL L ++ + K SI AD +ES+I A+ Sbjct: 64 AEGQLTRMRASLVRGQTLALVARELGLGEYLVLGGGELKSGGFRRDSILADALESIIGAM 123 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LDGG V ++ R A+ ++DAKT LQEW A+ P Y+VT G Sbjct: 124 LLDGGEPRCREVVLAWFAPRLDAISPQSAQKDAKTRLQEWLQARKFELPTYEVTQVEGLA 183 Query: 185 HDPRFTVVVEISGLAP---AQGMDCSKRAAEQVAAAEVLK 221 F V + + AQG S+R AEQ AA+ L+ Sbjct: 184 PKQTFDVQCSLDNVQQIFIAQG--ASRRKAEQEAASLALE 221 >gi|323499981|ref|ZP_08104937.1| ribonuclease III [Vibrio sinaloensis DSM 21326] gi|323314947|gb|EGA68002.1| ribonuclease III [Vibrio sinaloensis DSM 21326] Length = 225 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 111/206 (53%), Gaps = 6/206 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LEK++GY F + L+ ALTH S + + E RLEFLGD IL +I+ L++ F Sbjct: 6 AKLEKKLGYQFNDAELIGLALTHRSANGKHNE---RLEFLGDSILSFVIADDLYHRFPKV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE +L +++ K SI AD VE++I A+ Sbjct: 63 NEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD IE + ++K R A+K G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSDIEEVRRIILSWYKTRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVTNIKGEA 182 Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKR 209 H+ FTV E++G+ P G S+R Sbjct: 183 HNQEFTVSCEVAGIGQPVIGKGTSRR 208 >gi|253988786|ref|YP_003040142.1| ribonuclease III [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780236|emb|CAQ83397.1| ribonuclease III [Photorhabdus asymbiotica] Length = 226 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 121/225 (53%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFDQHDLLIQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGYRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++++ R + G ++D KT LQE+ P Y V Sbjct: 118 ALIGGIFLDSDIQTVERTILRWYETRLNEISPGDKQKDPKTRLQEYLQGHHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SG+ P +G S+R AEQ AA + LK+ Sbjct: 178 MVRGEAHDQEFTIHCQVSGIEQPVKGTGSSRRKAEQAAAEQALKQ 222 >gi|163783627|ref|ZP_02178616.1| RNase III [Hydrogenivirga sp. 128-5-R1-1] gi|159881120|gb|EDP74635.1| RNase III [Hydrogenivirga sp. 128-5-R1-1] Length = 222 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 125/223 (56%), Gaps = 13/223 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFD 64 + +E+RIGY F N+ LL++A TH S + S YE LEFLGD +L +I +L F Sbjct: 2 FEEVEERIGYTFKNKDLLKQAFTHVSYARDAGVSHYEILEFLGDALLNFIIVDILVKEFP 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ L+S E +++A+ELDL +I +S +K+V SI DV E+L A Sbjct: 62 EKREGALASLKAYLISEEFFNELAQELDLPRYILMSRG-KKNV-----SIIGDVFEALWA 115 Query: 125 ALYLDGG--IEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 A+Y+D G + ++ +K R ++S + R+D KT LQE ++ P Y+V Sbjct: 116 AVYVDSGRDCNLVKELFNRLFKDRIIETIRSHRIRKDYKTMLQEITQKRWRERPHYRVIS 175 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP+H FTV I G++ A G SK+ AEQ AA ++++ Sbjct: 176 VEGPEHAKTFTVESSIKGVS-AVGRGKSKKEAEQEAAKRLVEK 217 >gi|119471905|ref|ZP_01614213.1| RNase III, ds RNA [Alteromonadales bacterium TW-7] gi|119445278|gb|EAW26568.1| RNase III, ds RNA [Alteromonadales bacterium TW-7] Length = 225 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 116/217 (53%), Gaps = 5/217 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L +IGY F+++ LLE+A+TH S H Q + ERLEFLGD IL +I+ L+ F A Sbjct: 6 TELYNKIGYEFSDQGLLEQAMTHRS--HKGQHN-ERLEFLGDSILSFVIANALYAKFPKA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS ++LV +T ++ E L ++R+ K S AD VE++I A Sbjct: 63 REGDLSRMRSTLVRGQTLAEFGVEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIGAA 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LD GIE + +++ R A+ G ++D KT LQE + P Y V G Sbjct: 123 FLDSGIERCSELILSWYESRLDAISPGLNQKDPKTLLQEHLQGRKLPLPGYTVVDTKGQA 182 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H+ FTV + G+ + S+R AEQ AA + LK Sbjct: 183 HNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALK 219 >gi|260771922|ref|ZP_05880840.1| ribonuclease III [Vibrio metschnikovii CIP 69.14] gi|260613214|gb|EEX38415.1| ribonuclease III [Vibrio metschnikovii CIP 69.14] Length = 204 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/203 (36%), Positives = 111/203 (54%), Gaps = 6/203 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +E ALTH S + + E RLEFLGD IL +I+ L+ F EG++S +LV Sbjct: 1 MELALTHRSANGKHNE---RLEFLGDSILSFVIADELYRRFPKINEGDMSRMRATLVRGN 57 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 T +++ RE L ++++ K SI AD VE++I A+YLD IE+A + + Sbjct: 58 TLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEMARGIILNW 117 Query: 143 WKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA- 199 ++ R A+K G ++D KT LQE+ K P Y VT G H+ FTV +++G+A Sbjct: 118 YQPRLDAIKPGVSQKDPKTRLQEFLQGKRSPLPIYIVTNIKGEAHNQEFTVSCDVAGIAT 177 Query: 200 PAQGMDCSKRAAEQVAAAEVLKR 222 P G S+R AEQ AA L++ Sbjct: 178 PVIGKGTSRRKAEQAAAETALEQ 200 >gi|167037696|ref|YP_001665274.1| ribonuclease III [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|307264836|ref|ZP_07546398.1| ribonuclease III [Thermoanaerobacter wiegelii Rt8.B1] gi|320116111|ref|YP_004186270.1| ribonuclease III [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326389510|ref|ZP_08211077.1| ribonuclease III [Thermoanaerobacter ethanolicus JW 200] gi|166856530|gb|ABY94938.1| Ribonuclease III [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|306920094|gb|EFN50306.1| ribonuclease III [Thermoanaerobacter wiegelii Rt8.B1] gi|319929202|gb|ADV79887.1| ribonuclease III [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325994515|gb|EGD52940.1| ribonuclease III [Thermoanaerobacter ethanolicus JW 200] Length = 246 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHF 63 S LEKRI Y+F +++LL +ALTHSS +H + S ERLEFLGD +L L+IS L+ + Sbjct: 21 SELEKRINYSFKDKNLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEYLYKNR 80 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +EG LS +V + ++ ARE++L +F+R+ SI AD +E+++ Sbjct: 81 KDLEEGSLSKYRAEIVCEPSLARCAREIELGNFLRIGKGEELTGGRERDSILADAMEAIL 140 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLDGG+EV + + +K + G RD KT+LQE + Y++ Sbjct: 141 AAVYLDGGLEVVRNVILELFKNIIEEVLEGLIYRDYKTKLQEVVQSMEIGKIIYELIEEM 200 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDH+ F V I + +G SK+ AEQ AA E L + GI Sbjct: 201 GPDHNKTFVTQVRIGDVILGKGYGKSKKEAEQAAAMEALIKLGI 244 >gi|197122613|ref|YP_002134564.1| ribonuclease III [Anaeromyxobacter sp. K] gi|196172462|gb|ACG73435.1| Ribonuclease III [Anaeromyxobacter sp. K] Length = 383 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/214 (35%), Positives = 114/214 (53%), Gaps = 8/214 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62 LE R+G A +R ALTH S + ++E ERLEFLGD ++ L +S L Sbjct: 26 GALEARLGIAVTDRQAALAALTHKSYVNEHREDGLQDNERLEFLGDAVIDLAVSHRLMER 85 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F SA+EG+LS ++V + + +AR LDL + +R+ +S+ AD +E++ Sbjct: 86 FPSAREGDLSKMRAAVVDEQGLAGMARALDLGTLLRLGRGEELTGGRQKSSLLADAMEAV 145 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 IAA+Y G+ FVD++ + RA +G RD KT+LQE + ++ TP Y+V Sbjct: 146 IAAVYQGQGLPAVLCFVDRFLGEAFARA-AAGTLDRDFKTQLQELSQSRLRATPRYRVVA 204 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 GPDH F V ++ G +G SK+ AEQ Sbjct: 205 EHGPDHSKTFEVETDLRGEVLGRGAGRSKKDAEQ 238 >gi|309972852|gb|ADO96053.1| RNase III, dsRNA [Haemophilus influenzae R2846] Length = 227 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 121/223 (54%), Gaps = 17/223 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++IGY F + +LL+ ALTH S + + E RLEFLGD IL I+ L++ F E Sbjct: 7 LERKIGYRFNDIALLKLALTHRSAATQHNE---RLEFLGDSILNFTIAEALYHQFPRCNE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +LV T + +AR+ +L ++ + S K+ SI AD VE++I A+ L Sbjct: 64 GELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSL 123 Query: 129 DGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D G+ V T V + W Q+ L K G ++DAKT LQE+ K P Y+V G H Sbjct: 124 DQGLAVT-TQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGEAH 182 Query: 186 DPRFTVVVEISGLAPAQGMD-------CSKRAAEQVAAAEVLK 221 FTV ++ A+ +D S+R AEQ AA ++LK Sbjct: 183 CQIFTVECKVKS---AEKIDRTFVAKGSSRRKAEQAAAEQILK 222 >gi|251788698|ref|YP_003003419.1| ribonuclease III [Dickeya zeae Ech1591] gi|247537319|gb|ACT05940.1| ribonuclease III [Dickeya zeae Ech1591] Length = 226 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 120/225 (53%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+K++GY F LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQKKLGYTFQQYDLLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSNIQTVERLILSWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SG + P G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRKAEQAAAEQALKK 222 >gi|312143881|ref|YP_003995327.1| ribonuclease III [Halanaerobium sp. 'sapolanicus'] gi|311904532|gb|ADQ14973.1| ribonuclease III [Halanaerobium sp. 'sapolanicus'] Length = 238 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/205 (36%), Positives = 109/205 (53%), Gaps = 6/205 (2%) Query: 18 ANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 +N+ LL++ALTH S + + + ERLEFLGD +L L +ST +FN F EGEL+ Sbjct: 22 SNKKLLQRALTHKSFPNENKNLSIKDNERLEFLGDSVLSLAVSTYIFNKFSDFPEGELAK 81 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 +VSA ++ A++L+L ++ + SI AD +E++ ALYLD G Sbjct: 82 MRAVVVSAPILAEAAKKLELGRYLFLGKGEEMTGGRERDSILADSMEAIFGALYLDQGFT 141 Query: 134 VAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 A FV K K+ + + G +D KT LQE + PEY+V GPDH+ F V Sbjct: 142 AASDFVLKILKEDIKEVAMGNHIQDYKTMLQEIIQQDGNIRPEYEVIDEKGPDHNKTFIV 201 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAA 216 V++ + G SK+ AEQ AA Sbjct: 202 AVKLKENSLGSGQGSSKKEAEQEAA 226 >gi|439871|gb|AAA69690.1| ribonuclease [Coxiella burnetii] Length = 233 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 125/218 (57%), Gaps = 7/218 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L +R+G+ F N LL+ ALTH S S ++ ERLEFLGD +LG +I++ L+ A Sbjct: 5 NKLMERLGHQFNNLELLKIALTHCS---SGADNNERLEFLGDSVLGFIIASELYQRRPQA 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS S+V+ + +Q++ +L + ++++ +K SI AD +E+++ A+ Sbjct: 62 REGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALETIVGAI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 Y+D G+E V ++ +R K ++DAK+ LQEW A+ P Y+V +G Sbjct: 122 YIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEVKI-TGEA 180 Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 H FTV + GL +G++ ++R AEQ+AA L+ Sbjct: 181 HAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218 >gi|95930677|ref|ZP_01313411.1| Ribonuclease III [Desulfuromonas acetoxidans DSM 684] gi|95133329|gb|EAT14994.1| Ribonuclease III [Desulfuromonas acetoxidans DSM 684] Length = 244 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 111/202 (54%), Gaps = 5/202 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNH 62 S E+R+GY F +R L+ AL H S ++ ER EFLGD +L L+++ LF Sbjct: 14 SQFEERLGYRFTDRHYLQTALIHKSYANEQLRDPAACNERQEFLGDAVLDLVMADYLFCT 73 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EGELS + LVSA ++VAR L+L +++ R+ ++ AD +E++ Sbjct: 74 YPQLPEGELSRIRSELVSARALAKVARRLNLGPCLKLGRGERRSGGQDKDNLLADALEAV 133 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G +VA + + ++ A+++ + + D KT QE A A+FG PEY++ Sbjct: 134 FGAVFLDAGWDVARDVLGRMFEGTAVQAARRKSLDYKTRFQELAQARFGAAPEYELVATE 193 Query: 182 GPDHDPRFTVVVEISGLAPAQG 203 GPDH +TV+V G QG Sbjct: 194 GPDHQREYTVIVSCEGRHLGQG 215 >gi|303233301|ref|ZP_07319972.1| ribonuclease III [Atopobium vaginae PB189-T1-4] gi|302480601|gb|EFL43690.1| ribonuclease III [Atopobium vaginae PB189-T1-4] Length = 229 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 113/221 (51%), Gaps = 3/221 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 R +++ + Y F++ +L + ALTH S SYERLEFLGD ILG +I+ +F Sbjct: 6 RVCRVQEILDYTFSDITLAKAALTHPSAVEGQPVSASYERLEFLGDSILGAIIACDMFEQ 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ SLVS +T SQVA EL +A I R M S +V E+L Sbjct: 66 FPDMDEGALTRMKTSLVSGQTLSQVADELGIAPLIVFGESERGTGTRGMHSALENVYEAL 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A+YLDGG + F+ + + + + K+ELQE++ + P Y++ S Sbjct: 126 VGAMYLDGGYDPTAAFIRRTLAEYMVPQRAAHPISPKSELQEFSQRIYHEMPVYELEEES 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H P FT V ++G +G SK+ ++ AA L + Sbjct: 186 GPAHLPHFTTAVYVNGELVGRGSGTSKKESQTQAAQAALDK 226 >gi|154707005|ref|YP_001423899.1| ribonuclease III [Coxiella burnetii Dugway 5J108-111] gi|165919331|ref|ZP_02219417.1| ribonuclease III [Coxiella burnetii RSA 334] gi|189043305|sp|A9KFA0|RNC_COXBN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|154356291|gb|ABS77753.1| ribonuclease III [Coxiella burnetii Dugway 5J108-111] gi|165916991|gb|EDR35595.1| ribonuclease III [Coxiella burnetii RSA 334] Length = 233 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 125/218 (57%), Gaps = 7/218 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L +R+G+ F N LL+ ALTH S S ++ ERLEFLGD +LG +I++ L+ A Sbjct: 5 NKLMERLGHQFNNLELLKIALTHRS---SGADNNERLEFLGDSVLGFIIASELYQRRPQA 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS S+V+ + +Q++ +L + ++++ +K SI AD +E+++ A+ Sbjct: 62 REGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGAI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 Y+D G+E V ++ +R K ++DAK+ LQEW A+ P Y+V +G Sbjct: 122 YIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEVKI-TGEA 180 Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 H FTV + GL +G++ ++R AEQ+AA L+ Sbjct: 181 HAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218 >gi|114320503|ref|YP_742186.1| ribonuclease III [Alkalilimnicola ehrlichii MLHE-1] gi|122311783|sp|Q0A8Z1|RNC_ALHEH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|114226897|gb|ABI56696.1| RNAse III [Alkalilimnicola ehrlichii MLHE-1] Length = 228 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/217 (36%), Positives = 117/217 (53%), Gaps = 6/217 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ R+GY F LL++ALTH S++ ERLEFLGD IL +I+ L++ A E Sbjct: 8 LQDRLGYRFRRPELLDEALTHRSVTGP---DNERLEFLGDGILNFVIADELYHRRPDATE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS +LV+ T +++ + LD+ + +R+ K SI AD VE+L A+YL Sbjct: 65 GVLSRLRATLVNGRTLAEIGKGLDVGTALRLGGGEMKSGGQRRKSILADAVEALFGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 DGG + + + + ++ R +L + +D KT LQE A P Y+V SG HD Sbjct: 125 DGGFDPSRETILRLYRDRLASLPTEAELKDPKTRLQEHLQAGRRPLPRYEVLEVSGQSHD 184 Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 F V + A A+G S+R AEQ AA ++LKR Sbjct: 185 QTFRVACRLQDAAVTAEGEAGSRRKAEQQAAEQMLKR 221 >gi|302537165|ref|ZP_07289507.1| ribonuclease III [Streptomyces sp. C] gi|302446060|gb|EFL17876.1| ribonuclease III [Streptomyces sp. C] Length = 273 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 119/219 (54%), Gaps = 6/219 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 16 AASSHTLLEGRLGYQLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SFIR+ SI AD + Sbjct: 75 YTTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS D KT LQE A+ PEY V Sbjct: 135 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLV 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T +GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 232 >gi|295836307|ref|ZP_06823240.1| ribonuclease III [Streptomyces sp. SPB74] gi|295825949|gb|EFG64564.1| ribonuclease III [Streptomyces sp. SPB74] Length = 280 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/215 (36%), Positives = 118/215 (54%), Gaps = 6/215 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 46 HTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRAH 104 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ ++V++ ++V+R LDL +FIR+ SI AD +E++I Sbjct: 105 PDLPEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVI 164 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G++ AG V + + KS + D KT LQE + PEY VT Sbjct: 165 GAVYLDQGLDKAGELVHRLFDPLIEKSAELGAGLDWKTSLQELTAVEGLGVPEYLVT-EE 223 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 224 GPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 258 >gi|290476134|ref|YP_003469034.1| RNase III, ds RNA [Xenorhabdus bovienii SS-2004] gi|289175467|emb|CBJ82270.1| RNase III, ds RNA [Xenorhabdus bovienii SS-2004] Length = 226 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 123/225 (54%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+++ + L++++GY F LL +ALTH S + + E RLEFLGD IL +I+ L+ Sbjct: 1 MNSIIINRLQRKLGYTFIQHDLLLQALTHRSANSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD +E Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGHRRESILADSIE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGAIFLDSDIQTIERIILSWYETRLNEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ +ISG P +G+ S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQISGFEQPVRGVGSSRRKAEQAAAEQALKQ 222 >gi|271501621|ref|YP_003334647.1| ribonuclease III [Dickeya dadantii Ech586] gi|270345176|gb|ACZ77941.1| ribonuclease III [Dickeya dadantii Ech586] Length = 226 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 120/225 (53%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+K++GY F LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQKKLGYTFQQYDLLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSNIQTIERLILSWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SG + P G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRKAEQAAAEQALKK 222 >gi|282600119|ref|ZP_05973085.2| ribonuclease III [Providencia rustigianii DSM 4541] gi|282566488|gb|EFB72023.1| ribonuclease III [Providencia rustigianii DSM 4541] Length = 263 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L L++++GY F LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 38 MNPLLLEKLQRKLGYTFTQHDLLIQALTHRSASSKHNE---RLEFLGDSILSFVIANDLY 94 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 95 HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 154 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ + P Y V Sbjct: 155 ALIGGIFLDSDIQTIERIILAWYKGRLDEISPGDKQKDPKTRLQEYLQGRHLPLPNYLVV 214 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 G HD FT+ E+SG+ + G+ S+R AEQ AA + LK Sbjct: 215 QVKGEAHDQEFTIHCEVSGIEQSINGVGSSRRKAEQAAAEQALK 258 >gi|187778952|ref|ZP_02995425.1| hypothetical protein CLOSPO_02547 [Clostridium sporogenes ATCC 15579] gi|187772577|gb|EDU36379.1| hypothetical protein CLOSPO_02547 [Clostridium sporogenes ATCC 15579] Length = 237 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 6/221 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L+ ++ F + LL+ ALTHSS ++ + + YERLEFLGD +L L+IS L+ ++ Sbjct: 14 LQYKLKVCFKDEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDK 73 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 KEGEL+ + +V + ++A+ DL ++++S SI AD VES+IAA+ Sbjct: 74 KEGELTRKRAIIVCENSLYEMAKRWDLGFYLQMSKGEELTGGRERVSILADCVESIIAAI 133 Query: 127 YLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD G++ A FV K +K ++A++ + D KT LQE +T Y++ + GP Sbjct: 134 YLDKGLDEAREFVMKNFKEIIEKAMRD-EIILDYKTTLQEIVQQNNDLTINYELLKQEGP 192 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H +F V I G+ SK+ AEQ AA E LK G Sbjct: 193 PHRRKFFTNVTIDNEVRGTGIGYSKKEAEQNAAKEALKNLG 233 >gi|29654794|ref|NP_820486.1| ribonuclease III [Coxiella burnetii RSA 493] gi|161830652|ref|YP_001597345.1| ribonuclease III [Coxiella burnetii RSA 331] gi|30581027|sp|P51837|RNC_COXBU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043306|sp|A9N942|RNC_COXBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|29542062|gb|AAO91000.1| ribonuclease III [Coxiella burnetii RSA 493] gi|161762519|gb|ABX78161.1| ribonuclease III [Coxiella burnetii RSA 331] Length = 233 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 125/218 (57%), Gaps = 7/218 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L +R+G+ F N LL+ ALTH S S ++ ERLEFLGD +LG +I++ L+ A Sbjct: 5 NKLMERLGHQFNNLELLKIALTHCS---SGADNNERLEFLGDSVLGFIIASELYQRRPQA 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS S+V+ + +Q++ +L + ++++ +K SI AD +E+++ A+ Sbjct: 62 REGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGAI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 Y+D G+E V ++ +R K ++DAK+ LQEW A+ P Y+V +G Sbjct: 122 YIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEVKI-TGEA 180 Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 H FTV + GL +G++ ++R AEQ+AA L+ Sbjct: 181 HAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218 >gi|294340985|emb|CAZ89380.1| Ribonuclease III (RNase III) [Thiomonas sp. 3As] Length = 276 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 119/222 (53%), Gaps = 8/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LE R+GY F +R L E+ALTH S + E RLEFLGD +L L + L++ Sbjct: 3 TALETRLGYVFRDRKLFERALTHRSFGADHNE---RLEFLGDSVLNLSAAAWLYHQAARQ 59 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS +LV AE ++VAR +DL F+R+ + + SI AD VE+L+ A+ Sbjct: 60 DEGQLSRLRAALVRAEALAEVARAIDLGRFLRLGEGELQSGGAQRESILADTVEALLGAI 119 Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YL+ G + A + + + L + R+DAKT+LQE+ + P Y V G Sbjct: 120 YLEAGFDTAQEVMRRLFAPLMDTLDADVVRKDAKTQLQEFLQGQRLPLPSYAVLDVRGAA 179 Query: 185 HDPRFTV--VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H +F V VE GL +G S+R AEQ AA +++R G Sbjct: 180 HQQQFKVECAVEALGLK-VEGEGDSRRRAEQDAATRMIERIG 220 >gi|297191816|ref|ZP_06909214.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486] gi|197722006|gb|EDY65914.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486] Length = 296 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 119/219 (54%), Gaps = 6/219 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 9 NASSHTLLEGRLGYQLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 67 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SFIR+ SI AD + Sbjct: 68 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 127 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS D KT LQE A+ PEY V Sbjct: 128 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLV 187 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T +GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 188 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 225 >gi|260551498|ref|ZP_05825682.1| dsRNA-specific ribonuclease [Acinetobacter sp. RUH2624] gi|260405492|gb|EEW98985.1| dsRNA-specific ribonuclease [Acinetobacter sp. RUH2624] Length = 230 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 114/213 (53%), Gaps = 5/213 (2%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 RIGY F LL+ ALTH S+SH Y +YERLEFLGD +LG++I+ L++ + EG L Sbjct: 16 RIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPHENEGRL 73 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + +LV E ++A +L L+ + +S+ K SI AD VE++I A+YLD Sbjct: 74 TRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSS 133 Query: 132 -IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 + + V K++ ++ +D K+ LQE+ A+ P Y+V G Sbjct: 134 DLNLLKDIVLKWYVPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQH 193 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V + GL G S+R AEQ AAAE+LK Sbjct: 194 FKVECLVDGLPKIYGEGSSRRFAEQAAAAEILK 226 >gi|259501533|ref|ZP_05744435.1| ribonuclease III [Lactobacillus iners DSM 13335] gi|302191494|ref|ZP_07267748.1| ribonuclease III [Lactobacillus iners AB-1] gi|309804216|ref|ZP_07698293.1| ribonuclease III [Lactobacillus iners LactinV 11V1-d] gi|309806878|ref|ZP_07700865.1| ribonuclease III [Lactobacillus iners LactinV 03V1-b] gi|309808658|ref|ZP_07702550.1| ribonuclease III [Lactobacillus iners LactinV 01V1-a] gi|325913482|ref|ZP_08175848.1| ribonuclease III [Lactobacillus iners UPII 60-B] gi|259167051|gb|EEW51546.1| ribonuclease III [Lactobacillus iners DSM 13335] gi|308163619|gb|EFO65889.1| ribonuclease III [Lactobacillus iners LactinV 11V1-d] gi|308166744|gb|EFO68936.1| ribonuclease III [Lactobacillus iners LactinV 03V1-b] gi|308168132|gb|EFO70258.1| ribonuclease III [Lactobacillus iners LactinV 01V1-a] gi|325477251|gb|EGC80397.1| ribonuclease III [Lactobacillus iners UPII 60-B] Length = 225 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 119/220 (54%), Gaps = 7/220 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + L+++ F N LLE+ALTHSS S+ +Q ++YE+LEFLGD +L L IS L+ HF Sbjct: 8 NELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISDYLYRHFP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGEL+ +++V E SQ A E + +++ K ++ DV E+ Sbjct: 68 NMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLEDVFEAFNG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL+LD G+ F+ + G F RD KTELQE + +YKV Sbjct: 128 ALFLDQGMPAVQHFL-HLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYKVI--DS 184 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + PRFTV + ++G +QG+ SK+AAEQVAA+ LK Sbjct: 185 DEAQPRFTVQLIVAGENISQGIGRSKKAAEQVAASVALKN 224 >gi|254383289|ref|ZP_04998642.1| ribonuclease 3 [Streptomyces sp. Mg1] gi|194342187|gb|EDX23153.1| ribonuclease 3 [Streptomyces sp. Mg1] Length = 277 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 119/219 (54%), Gaps = 6/219 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 16 AASSHTLLEGRLGYRLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SFIR+ SI AD + Sbjct: 75 YTTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS D KT LQE A+ PEY V Sbjct: 135 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLV 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T +GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 232 >gi|290957120|ref|YP_003488302.1| ribonuclease III [Streptomyces scabiei 87.22] gi|260646646|emb|CBG69743.1| putative ribonuclease III [Streptomyces scabiei 87.22] Length = 272 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 118/219 (53%), Gaps = 6/219 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 17 TASSHTLLEGRLGYKLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 75 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R LDL SFIR+ SI AD + Sbjct: 76 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTL 135 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS D KT LQE + PEY V Sbjct: 136 EAVIGAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLV 195 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T +GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 196 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 233 >gi|220917396|ref|YP_002492700.1| Ribonuclease III [Anaeromyxobacter dehalogenans 2CP-1] gi|219955250|gb|ACL65634.1| Ribonuclease III [Anaeromyxobacter dehalogenans 2CP-1] Length = 383 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/214 (35%), Positives = 114/214 (53%), Gaps = 8/214 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62 LE R+G A +R ALTH S + ++E ERLEFLGD ++ L +S L Sbjct: 26 GALEARLGIAVTDRQAALAALTHKSYVNEHREDGLQDNERLEFLGDAVIDLAVSHRLMER 85 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F SA+EG+LS ++V + + +AR LDL + +R+ +S+ AD +E++ Sbjct: 86 FPSAREGDLSKMRAAVVDEQGLAGMARALDLGTLLRLGRGEELTGGRQKSSLLADAMEAV 145 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 IAA+Y G+ FVD++ + RA +G RD KT+LQE + ++ TP Y+V Sbjct: 146 IAAVYQGQGLPAVLCFVDRFLGEAFARAA-AGTLDRDFKTQLQELSQSRLRATPRYRVVA 204 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 GPDH F V ++ G +G SK+ AEQ Sbjct: 205 EHGPDHSKTFEVETDLRGEVLGRGAGRSKKDAEQ 238 >gi|163814044|ref|ZP_02205436.1| hypothetical protein COPEUT_00197 [Coprococcus eutactus ATCC 27759] gi|158450493|gb|EDP27488.1| hypothetical protein COPEUT_00197 [Coprococcus eutactus ATCC 27759] Length = 232 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 117/219 (53%), Gaps = 6/219 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 Y LEK+IGY F + +LL ALTH+S ++ + +SYERLEFLGD IL ++S LF Sbjct: 8 YDELEKKIGYQFKDINLLITALTHTSFANELKVNKTDSYERLEFLGDAILEYIVSEYLFL 67 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +EG L+ SLV T SQ++ L ++R+S SI D+ ES Sbjct: 68 KKKEYEEGRLTKLRASLVCEFTLSQISESLGYGDYVRLSKGEELTGGRKRKSILCDLFES 127 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 ++ A+YLDGGIE A FV ++ F DAK+ LQE+ K G Y++ Sbjct: 128 VLGAMYLDGGIEPAKEFVHRFLLDDVETKSLF-YDAKSTLQEFCQ-KHGRQLSYELIEER 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP+H F I+G A+G +++ +EQ+AA + L Sbjct: 186 GPEHSKIFVSDAVINGKVTARGEGPNRKTSEQMAAYKTL 224 >gi|118580198|ref|YP_901448.1| ribonuclease III [Pelobacter propionicus DSM 2379] gi|118502908|gb|ABK99390.1| RNAse III [Pelobacter propionicus DSM 2379] Length = 234 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 113/207 (54%), Gaps = 4/207 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + LE+ I Y F +++ L +ALTH S H +Y+RLEFLGD +LG++++ +LF F Sbjct: 6 AELEREIAYRFIDQAPLLQALTHPSFEHEQAGGGNYQRLEFLGDAVLGMVLAEMLFRRFP 65 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG LS + + +T + +AR L F+R+ + SI ADV+E+LIA Sbjct: 66 DSNEGVLSRLRSQIADQDTLAGIARSFGLGRFVRLGRGEEQGAGRNKDSILADVLEALIA 125 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLDGG++ + + + + G R DAK+ELQE A+ +P Y++T SG Sbjct: 126 AVYLDGGLKESRRLIQRLFVAILESRGARLRFNDAKSELQELLSARRLPSPVYRLTGESG 185 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 P HD F V + +G SK+ Sbjct: 186 PPHDRLFIFQVLVDDAVVGEGEGRSKK 212 >gi|165975962|ref|YP_001651555.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|238687533|sp|B0BUA6|RNC_ACTPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|165876063|gb|ABY69111.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 223 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 118/223 (52%), Gaps = 8/223 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY F N L +ALTH S ++ ERLEFLGD IL I LF F Sbjct: 1 MQLERLQKKLGYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALFEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ L ++++ + K SI +D VE++I Sbjct: 58 PKANEGELSRMRATLVREQTLAILARKFGLGEYMKLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 AA+YLD G++ A V W Q L K G ++D KT LQE+ + P Y+V Sbjct: 118 AAIYLDAGMDKAIAQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLNI 176 Query: 181 SGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 G H+ F V +I L G+ S+R AEQ AA +VL + Sbjct: 177 KGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAK 219 >gi|296136816|ref|YP_003644058.1| ribonuclease III [Thiomonas intermedia K12] gi|295796938|gb|ADG31728.1| ribonuclease III [Thiomonas intermedia K12] Length = 276 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 119/222 (53%), Gaps = 8/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LE R+GY F +R L E+ALTH S + E RLEFLGD +L L + L++ Sbjct: 3 TALETRLGYVFRDRKLFERALTHRSFGADHNE---RLEFLGDSVLNLSAAAWLYHQAARQ 59 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS +LV AE ++VAR +DL F+R+ + + SI AD VE+L+ A+ Sbjct: 60 DEGQLSRLRAALVRAEALAEVARAIDLGRFLRLGEGELQSGGAQRESILADTVEALLGAI 119 Query: 127 YLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YL+ G + A + + + L + R+DAKT+LQE+ + P Y V G Sbjct: 120 YLEAGFDTAQEVMRRLFAPLMDTLDADVVRKDAKTQLQEFLQGQRLPLPSYAVLDVRGAA 179 Query: 185 HDPRFTV--VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H +F V VE GL +G S+R AEQ AA +++R G Sbjct: 180 HQQQFKVECAVEALGLK-VEGEGDSRRRAEQDAATRMIERIG 220 >gi|206603814|gb|EDZ40294.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG'] Length = 247 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 9/224 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFN 61 S LE +GY F LLE+A TH S + + ERLEFLGD +LGL+I+ L Sbjct: 8 SELEDLLGYRFRKIDLLEEATTHKSFMNEGRRLGVTRNNERLEFLGDTVLGLVIAEYLMV 67 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG LS +VS T + V+R L + F+ + +S+ AD +E+ Sbjct: 68 TYPKYPEGVLSKFKGRIVSEPTLASVSRVLGIGGFLLIGKGEELTQGREKSSLLADAMEA 127 Query: 122 LIAALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +IAA+YLD G++ A TF+ +++ ++ ++ + D KT+LQE+ + P Y+V Sbjct: 128 VIAAIYLDSGLDAARTFIIGHFRSVIEQTVQEDSIQ-DYKTDLQEYCQRELETLPVYQVM 186 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + GPDH F V V I G +G SK+ AEQ AA + L R Sbjct: 187 DQRGPDHQKEFDVAVLIRGKIYGEGSGRSKKEAEQKAAKDALSR 230 >gi|300113378|ref|YP_003759953.1| ribonuclease III [Nitrosococcus watsonii C-113] gi|299539315|gb|ADJ27632.1| ribonuclease III [Nitrosococcus watsonii C-113] Length = 233 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 117/208 (56%), Gaps = 8/208 (3%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +++GY FA +LL A+TH S + +E+ ERLEFLGD IL LI+ L++ F A+EG+ Sbjct: 10 QKLGYQFAEPALLRHAITHRSAA---KENNERLEFLGDSILNFLIADFLYSGFPKAQEGK 66 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 LS +LV ET +++AREL++ + + K TSI AD E++I A+YLDG Sbjct: 67 LSRLRATLVKGETLAELARELEIGDHLILGLGELKSGGYRRTSILADAFEAVIGAVYLDG 126 Query: 131 GIEVAGTFVDKYWKQR--ALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 G+E V ++ R L +D KT LQE+ A+ P+Y+V+ +G HD Sbjct: 127 GLEACRQLVSSLYRDRLETLTDEVLLNLKDPKTRLQEYLQARQFPLPDYRVSAVNGEAHD 186 Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 F V ++ P+ G+ S+R AEQ Sbjct: 187 QVFQVECTLNNTFPSVIGIGRSRRKAEQ 214 >gi|157374287|ref|YP_001472887.1| ribonuclease III [Shewanella sediminis HAW-EB3] gi|189043354|sp|A8FSD6|RNC_SHESH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157316661|gb|ABV35759.1| Ribonuclease III [Shewanella sediminis HAW-EB3] Length = 225 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/215 (37%), Positives = 116/215 (53%), Gaps = 5/215 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + +GY F ++SLLE ALTH S S + E RLEFLGD IL ++IS LF+ F A E Sbjct: 10 LCRTLGYEFNDQSLLEHALTHRSASSKHNE---RLEFLGDSILSIIISDALFHQFPKATE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV + +++ E L ++ + K SI AD VE++I A+Y+ Sbjct: 67 GDLSRMRATLVCGKMLAEIGFEFKLGDYLNLGPGELKSGGFRRESIIADAVEAIIGAVYI 126 Query: 129 DGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 D G+E V +++ R A+ ++D KT LQE P YKV G H Sbjct: 127 DSGVEKCRCLVLSWYESRLAIIQPVNQKDPKTLLQELLQGFKKPLPVYKVIDIKGEAHAQ 186 Query: 188 RFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 FTV + L+ P G+ S+R AEQ+AAA+ L+ Sbjct: 187 TFTVECYVEELSKPVIGIASSRRKAEQLAAADALE 221 >gi|323484230|ref|ZP_08089599.1| hypothetical protein HMPREF9474_01350 [Clostridium symbiosum WAL-14163] gi|323692112|ref|ZP_08106358.1| ribonuclease III [Clostridium symbiosum WAL-14673] gi|323402472|gb|EGA94801.1| hypothetical protein HMPREF9474_01350 [Clostridium symbiosum WAL-14163] gi|323503835|gb|EGB19651.1| ribonuclease III [Clostridium symbiosum WAL-14673] Length = 228 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/212 (35%), Positives = 113/212 (53%), Gaps = 5/212 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE++ GY F NR LL +A+THSS ++ S E ERLEFLGD +L ++ S LF+ F Sbjct: 8 LEEKTGYHFNNRELLGRAMTHSSYANECHKSKLECNERLEFLGDAVLEIVSSDFLFHKFP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ S+V T + A EL L ++ + S+ +D +E+LI Sbjct: 68 DMPEGDLTKTRASMVCEPTLAYCAEELSLGKYLLLGKGEEATGGRNRNSVVSDAMEALIG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG A F+ K+ ++ K D+KT LQE ++ Y++ GPD Sbjct: 128 AIYLDGGFASAKEFIHKFI-LNDMEHKKLFYDSKTILQEIVQSRCEEGLSYQLLREEGPD 186 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 H+ F V +I +G +K+AAEQ+AA Sbjct: 187 HNKMFEVAAKIGEKEIGRGTGRTKKAAEQLAA 218 >gi|117620609|ref|YP_855343.1| ribonuclease III [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562016|gb|ABK38964.1| ribonuclease III [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 223 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 112/209 (53%), Gaps = 6/209 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ + L+ R+G+ F ++ LL +ALTH S + E RLEFLGD IL L+I+ LF+ F Sbjct: 3 IKMNRLQSRLGHVFQDQELLTRALTHRSAGSRHNE---RLEFLGDSILSLVIADDLFHRF 59 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EG+LS +LV +T +++ RE DL + + K SI AD VE++I Sbjct: 60 PQAAEGDLSRMRATLVREKTLAELGREFDLGDHLILGPGELKSGGFRRESILADTVEAVI 119 Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD +E T + ++ R +K G ++D KT LQE P Y VT Sbjct: 120 GAVYLDTNLETVRTLLLGWYASRLDEIKPGIEQKDPKTRLQEILQGSRKSLPTYTVTNVK 179 Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKR 209 G H+ FTV ++ GL P G+ S+R Sbjct: 180 GEAHNQEFTVQCDVEGLDGPLVGVGTSRR 208 >gi|37527216|ref|NP_930560.1| ribonuclease III [Photorhabdus luminescens subsp. laumondii TTO1] gi|81418780|sp|Q7N1X5|RNC_PHOLL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|36786650|emb|CAE15714.1| ribonuclease III (RNase III) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 226 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFDQYDLLIQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGYRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A++LD I+ + +++ R + G ++D KT LQE+ P Y V Sbjct: 118 ALIGAIFLDSDIQSIERIILSWYETRLNEISPGDKQKDPKTRLQEYLQGHHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SG+ P +G S+R AEQ AA + LK+ Sbjct: 178 MVRGEAHDQEFTIHCQVSGIEQPVKGTGSSRRKAEQAAAEQALKQ 222 >gi|240949696|ref|ZP_04754031.1| ribonuclease III [Actinobacillus minor NM305] gi|240295954|gb|EER46630.1| ribonuclease III [Actinobacillus minor NM305] Length = 223 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 120/220 (54%), Gaps = 6/220 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY F L +ALTH S + ++ ERLEFLGD IL I L++ F Sbjct: 1 MQLERLQKKLGYQFETLDYLTQALTHRSAAS---KNNERLEFLGDSILNFTIGKALYDKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ +L ++++ + K SI +D VE++I Sbjct: 58 PKADEGELSRMRAALVREQTLAVIARQFELGEYLKLGAGELKSGGFRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G+E A + +++ + G+ ++D KT LQE+ + PEY+V Sbjct: 118 AAIYLDKGMEPAMERIYAWYETFLAEITPGEAQKDPKTRLQEFLQGRKLPLPEYEVIDIK 177 Query: 182 GPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220 G H+ F V ++ G+ G S+R AEQ A +VL Sbjct: 178 GEAHNQTFKVTCKVQGIEEIFTGQGTSRRKAEQNVAEKVL 217 >gi|254428849|ref|ZP_05042556.1| ribonuclease III [Alcanivorax sp. DG881] gi|196195018|gb|EDX89977.1| ribonuclease III [Alcanivorax sp. DG881] Length = 228 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 118/220 (53%), Gaps = 9/220 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L R+GY F + SLLE ALTH S+S +YERLEFLGD LG +IS LF F A Sbjct: 6 NRLMARLGYQFQDISLLELALTHRSVSR--HRNYERLEFLGDAQLGQIISVALFEQFPEA 63 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ SLV +T + VAREL L ++ + K SI AD +ES+I A+ Sbjct: 64 AEGQLTRMRASLVRGQTLALVARELGLGEYLVLGGGELKSGGFRRDSILADALESIIGAM 123 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LDGG V ++ R A+ ++DAKT LQEW A+ P Y+VT G Sbjct: 124 LLDGGESRCREVVLCWFAPRLDAISPQSAQKDAKTRLQEWLQARKFELPTYEVTQVEGLA 183 Query: 185 HDPRFTV---VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V + ++ + AQG S+R AEQ AA+ L+ Sbjct: 184 PKQTFDVQCSLDQVQQIFIAQG--ASRRKAEQEAASLALE 221 >gi|119476421|ref|ZP_01616772.1| ribonuclease III [marine gamma proteobacterium HTCC2143] gi|119450285|gb|EAW31520.1| ribonuclease III [marine gamma proteobacterium HTCC2143] Length = 229 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 110/206 (53%), Gaps = 5/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + L +++G+ F + SL++ AL+H S+ ++ ERLEFLGD I+ L++ LF F Sbjct: 8 HHLLIQKLGHEFNDPSLVDLALSHRSVG---AKNNERLEFLGDSIVNFLMAEALFQKFPE 64 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EGELS LV ET +++A+E + + + K SI AD VE+LI A Sbjct: 65 CREGELSQMRAQLVKGETLAEIAKEFSVGEHLNLGPGELKSGGYRRESILADAVEALIGA 124 Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGG+ V ++++ R + +DAKT LQEW A+ P+Y + SG Sbjct: 125 IYLDGGMAACNEHVPRWFESRLDLISPRNSNKDAKTRLQEWLQARKMPLPQYVLINTSGS 184 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 DH +FT+ +I L D S R Sbjct: 185 DHQQQFTIECDIHHLQQRFTGDGSSR 210 >gi|71281241|ref|YP_270777.1| ribonuclease III [Colwellia psychrerythraea 34H] gi|90101619|sp|Q47WP5|RNC_COLP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71146981|gb|AAZ27454.1| ribonuclease III [Colwellia psychrerythraea 34H] Length = 266 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 119/217 (54%), Gaps = 10/217 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L K++GY F LL +ALTH S ++ E RLEFLGD ILG +I+ L++ F E Sbjct: 11 LTKKLGYEFNEPLLLVQALTHRSAKGAHNE---RLEFLGDSILGFVIAEALYDKFPKHDE 67 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ +SLV T ++VAR+ +L + + K SI D +E++I A+YL Sbjct: 68 GDLTRMRSSLVKGVTLAEVARDFNLGECLILGPGELKSGGHHRESILEDAIEAIIGAVYL 127 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D IE + ++++R +K G ++D KT LQE+ + P Y+V +G H+ Sbjct: 128 DSNIECCKALILSWFERRLMVIKPGNEQKDPKTRLQEFLQGRKIPLPTYEVIDTTGQSHN 187 Query: 187 PRFTVVVE---ISGLAPAQGMDCSKRAAEQVAAAEVL 220 FTV + IS + A+G S+R AEQ AA ++L Sbjct: 188 QEFTVRCQTSVISEVVIAKGT--SRRKAEQEAAQQIL 222 >gi|309809559|ref|ZP_07703417.1| ribonuclease III [Lactobacillus iners SPIN 2503V10-D] gi|329921162|ref|ZP_08277684.1| ribonuclease III [Lactobacillus iners SPIN 1401G] gi|308170231|gb|EFO72266.1| ribonuclease III [Lactobacillus iners SPIN 2503V10-D] gi|328934800|gb|EGG31291.1| ribonuclease III [Lactobacillus iners SPIN 1401G] Length = 225 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 119/220 (54%), Gaps = 7/220 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + L+++ F N LLE+ALTHSS S+ +Q ++YE+LEFLGD +L L IS L+ HF Sbjct: 8 NELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISDYLYRHFP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGEL+ +++V E SQ A E + +++ K ++ DV E+ Sbjct: 68 NMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLEDVFEAFNG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL+LD G+ F+ + G F RD KTELQE + +YKV Sbjct: 128 ALFLDQGMPAVQHFL-HLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYKVI--DS 184 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + PRFTV + ++G +QG+ SK+AAEQVAA+ LK Sbjct: 185 DEAKPRFTVQLIVAGENISQGIGRSKKAAEQVAASVALKN 224 >gi|34580889|ref|ZP_00142369.1| ribonuclease III [Rickettsia sibirica 246] gi|157828029|ref|YP_001494271.1| ribonuclease III [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932727|ref|YP_001649516.1| ribonuclease III [Rickettsia rickettsii str. Iowa] gi|229586355|ref|YP_002844856.1| ribonuclease III [Rickettsia africae ESF-5] gi|166991034|sp|A8GQT8|RNC_RICRS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043343|sp|B0BW84|RNC_RICRO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|259646551|sp|C3PMF3|RNC_RICAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28262274|gb|EAA25778.1| ribonuclease III [Rickettsia sibirica 246] gi|157800510|gb|ABV75763.1| ribonuclease III [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907814|gb|ABY72110.1| ribonuclease III [Rickettsia rickettsii str. Iowa] gi|228021405|gb|ACP53113.1| Ribonuclease III [Rickettsia africae ESF-5] Length = 227 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 119/223 (53%), Gaps = 9/223 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQES--YERLEFLGDRILGLLISTLLFN 61 + LEK + Y+F N+ LL +AL+H S+ H Y++ YERLEFLGD +L L+I+ +LF Sbjct: 4 FEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEILFR 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA--DVV 119 +F + EG L+ + LV ET V +L L ++I ++ ++V ++ + Sbjct: 64 NFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYIIMTHG--EEVAGGRDNLNNIENAT 121 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+LIAA+YLD IE ++K W + D KT LQEWA A P Y++ Sbjct: 122 EALIAAIYLDSNIETTHDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIK 181 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 R G H FTV+V++ G + + AE+ AA +L R Sbjct: 182 REGASHSSTFTVLVKVKDYEQT-GTGHAIKEAEKNAARSLLHR 223 >gi|157803302|ref|YP_001491851.1| ribonuclease III [Rickettsia canadensis str. McKiel] gi|189043341|sp|A8EXI3|RNC_RICCK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157784565|gb|ABV73066.1| ribonuclease III [Rickettsia canadensis str. McKiel] Length = 227 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQES--YERLEFLGDRILGLLISTLLFN 61 ++ LEK +GY+F N+ LL +AL+H S+ H Y+++ YERLEFLGD +L L+I+ +LF+ Sbjct: 4 FNELEKLLGYSFKNKELLIEALSHPSLRQHHEYKDNKDYERLEFLGDAVLNLVITKILFS 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +F S EG L+ + LV ET V +L L +I ++ + + E+ Sbjct: 64 NFASYNEGNLAKIRSYLVCKETICMVGAKLALKDYIIMTYGEEVAGGRDNPNNIENATEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 LIAA+YLD IE + + W + D KT LQEWA A P Y + R Sbjct: 124 LIAAIYLDSNIETTHNIIGQLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYCLIKRE 183 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G H FTV+V++ G+ S + AE+ AA +L R Sbjct: 184 GAAHSSTFTVLVKVKDYEQI-GIGYSIKEAEKNAARSLLHR 223 >gi|153208682|ref|ZP_01946929.1| ribonuclease III [Coxiella burnetii 'MSU Goat Q177'] gi|212219222|ref|YP_002306009.1| ribonuclease III [Coxiella burnetii CbuK_Q154] gi|226741367|sp|B6J4J9|RNC_COXB1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|120575793|gb|EAX32417.1| ribonuclease III [Coxiella burnetii 'MSU Goat Q177'] gi|212013484|gb|ACJ20864.1| ribonuclease III [Coxiella burnetii CbuK_Q154] Length = 233 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 125/218 (57%), Gaps = 7/218 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L +R+G+ F N LL+ ALTH S S ++ ERLEFLGD +LG +I++ L+ A Sbjct: 5 NKLMERLGHQFNNLELLKIALTHRS---SGADNNERLEFLGDSVLGFIIASELYQRRPQA 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS S+V+ + +Q++ +L + ++++ +K SI AD +E+++ A+ Sbjct: 62 REGDLSRMRASMVNGDELAQMSIKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGAI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 Y+D G+E V ++ +R K ++DAK+ LQEW A+ P Y+V +G Sbjct: 122 YIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEVKI-TGEA 180 Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 H FTV + GL +G++ ++R AEQ+AA L+ Sbjct: 181 HAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218 >gi|291546254|emb|CBL19362.1| RNAse III [Ruminococcus sp. SR1/5] Length = 226 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/205 (38%), Positives = 110/205 (53%), Gaps = 5/205 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ IGY F +SLLE+A+THSS ++ ERLEFLGD +L L+ S L+ F Sbjct: 8 LEQTIGYQFTAKSLLEQAMTHSSYANEKHLGKLGCNERLEFLGDAVLELISSDFLYKKFR 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + +EGEL+ + S+V ++ + ARE L FI + SI +D +ESLI Sbjct: 68 NNQEGELTKKRASMVCEKSLAYCAREFGLPEFILLGRGEEMMGGRKRDSIVSDGLESLIG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG E A FV K+ L+ + D+KT LQE EY++ GPD Sbjct: 128 AMYLDGGFEPAQAFVMKFI-LNDLEDKRIFYDSKTVLQEMVQEGGNHPVEYRLLKEEGPD 186 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209 H FTV I+G + G+ +K+ Sbjct: 187 HSKSFTVEALINGKSMGTGIGHTKK 211 >gi|307252103|ref|ZP_07534002.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860403|gb|EFM92417.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 243 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 119/226 (52%), Gaps = 8/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 18 MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 75 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ++IAA+YLD G++ A V W Q L K G ++D KT LQE+ + P Y+V Sbjct: 135 AIIAAIYLDAGMDKAIAQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEV 193 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 G H+ F V +I L G+ S+R AEQ AA +VL + Sbjct: 194 LDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAK 239 >gi|257464706|ref|ZP_05629077.1| ribonuclease III [Actinobacillus minor 202] gi|257450366|gb|EEV24409.1| ribonuclease III [Actinobacillus minor 202] Length = 223 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 120/220 (54%), Gaps = 6/220 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY F L +ALTH S + ++ ERLEFLGD IL I L++ F Sbjct: 1 MQLERLQKKLGYQFETLDYLTQALTHRSAAS---KNNERLEFLGDSILNFTIGKALYDKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ +L ++++ + K SI +D VE++I Sbjct: 58 PKADEGELSRMRAALVREQTLAVIARQFELGEYLKLGAGELKSGGFRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G+E A + +++ + G+ ++D KT LQE+ + PEY+V Sbjct: 118 AAIYLDKGMEPAMERIYAWYETFLAEITPGEAQKDPKTRLQEFLQGRKLPLPEYEVIDIK 177 Query: 182 GPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220 G H+ F V ++ G+ G S+R AEQ A +VL Sbjct: 178 GEAHNQTFKVTCKVQGIDEIFTGQGTSRRKAEQNVAEKVL 217 >gi|15595050|ref|NP_212839.1| ribonuclease III [Borrelia burgdorferi B31] gi|7531188|sp|O51648|RNC_BORBU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|2688625|gb|AAC67040.1| ribonuclease III (rnc) [Borrelia burgdorferi B31] Length = 246 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 113/212 (53%), Gaps = 9/212 (4%) Query: 17 FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F+N LL AL HSS S+ + + ERLEFLGD +L L+I+ L+ + + EGELS Sbjct: 30 FSNFDLLNTALCHSSYSNELDQKSSNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSK 89 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + +VS ++ S +ARE++L S+I + + I AD +E+ + A+YLD G Sbjct: 90 ARSYIVSEDSLSNIAREINLGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFS 149 Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 A FV D Y + G F +D K+ LQE+ K+ ++P YK+ GPDHD F Sbjct: 150 RATEFVVGLFDMYIRL-MFNRGDF-KDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVF 207 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V + + + G SK+ AE AA LK Sbjct: 208 CVELYVGENFISNGKGKSKKEAEMRAAEVALK 239 >gi|195941524|ref|ZP_03086906.1| ribonuclease III (rnc) [Borrelia burgdorferi 80a] gi|216264636|ref|ZP_03436628.1| ribonuclease III [Borrelia burgdorferi 156a] gi|218249229|ref|YP_002375205.1| ribonuclease III [Borrelia burgdorferi ZS7] gi|221217995|ref|ZP_03589462.1| ribonuclease III [Borrelia burgdorferi 72a] gi|223889463|ref|ZP_03624049.1| ribonuclease III [Borrelia burgdorferi 64b] gi|224532354|ref|ZP_03672984.1| ribonuclease III [Borrelia burgdorferi WI91-23] gi|224533390|ref|ZP_03673984.1| ribonuclease III [Borrelia burgdorferi CA-11.2a] gi|225548949|ref|ZP_03769926.1| ribonuclease III [Borrelia burgdorferi 94a] gi|225549922|ref|ZP_03770883.1| ribonuclease III [Borrelia burgdorferi 118a] gi|226320458|ref|ZP_03796024.1| ribonuclease III [Borrelia burgdorferi 29805] gi|226321403|ref|ZP_03796930.1| ribonuclease III [Borrelia burgdorferi Bol26] gi|215981109|gb|EEC21916.1| ribonuclease III [Borrelia burgdorferi 156a] gi|218164417|gb|ACK74478.1| ribonuclease III [Borrelia burgdorferi ZS7] gi|221192301|gb|EEE18521.1| ribonuclease III [Borrelia burgdorferi 72a] gi|223885149|gb|EEF56253.1| ribonuclease III [Borrelia burgdorferi 64b] gi|224512661|gb|EEF83032.1| ribonuclease III [Borrelia burgdorferi WI91-23] gi|224513555|gb|EEF83912.1| ribonuclease III [Borrelia burgdorferi CA-11.2a] gi|225369381|gb|EEG98833.1| ribonuclease III [Borrelia burgdorferi 118a] gi|225370552|gb|EEG99988.1| ribonuclease III [Borrelia burgdorferi 94a] gi|226233199|gb|EEH31951.1| ribonuclease III [Borrelia burgdorferi Bol26] gi|226234100|gb|EEH32815.1| ribonuclease III [Borrelia burgdorferi 29805] gi|312147960|gb|ADQ30619.1| ribonuclease III [Borrelia burgdorferi JD1] gi|312148997|gb|ADQ29068.1| ribonuclease III [Borrelia burgdorferi N40] Length = 245 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 113/212 (53%), Gaps = 9/212 (4%) Query: 17 FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F+N LL AL HSS S+ + + ERLEFLGD +L L+I+ L+ + + EGELS Sbjct: 29 FSNFDLLNTALCHSSYSNELDQKSSNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSK 88 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + +VS ++ S +ARE++L S+I + + I AD +E+ + A+YLD G Sbjct: 89 ARSYIVSEDSLSNIAREINLGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFS 148 Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 A FV D Y + G F +D K+ LQE+ K+ ++P YK+ GPDHD F Sbjct: 149 RATEFVVGLFDMYIRL-MFNRGDF-KDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVF 206 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V + + + G SK+ AE AA LK Sbjct: 207 CVELYVGENFISNGKGKSKKEAEMRAAEVALK 238 >gi|149192067|ref|ZP_01870292.1| ribonuclease III [Vibrio shilonii AK1] gi|148834092|gb|EDL51104.1| ribonuclease III [Vibrio shilonii AK1] Length = 225 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 111/204 (54%), Gaps = 6/204 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK++GY F + LL ALTH S + ++ E RLEFLGD IL +I+ L++ F E Sbjct: 8 LEKKLGYHFNDSELLMLALTHRSANGNHNE---RLEFLGDSILSFVIADDLYHRFPKVNE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++ RE L ++++ K SI AD VE++I A+YL Sbjct: 65 GDMSRMRATLVRGNTLAELGREFVLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D +E+ V ++ R A+K G ++D KT LQE+ + P Y VT G H+ Sbjct: 125 DSDVEMVRKIVLSWYMTRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHN 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKR 209 FTV E++G+ P G S+R Sbjct: 185 QEFTVSCEVAGVDEPVIGRGTSRR 208 >gi|46143661|ref|ZP_00134800.2| COG0571: dsRNA-specific ribonuclease [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 226 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 119/226 (52%), Gaps = 8/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 1 MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 58 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ++IAA+YLD G++ A V W Q L K G ++D KT LQE+ + P Y+V Sbjct: 118 AIIAAIYLDAGMDKAIEQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEV 176 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 G H+ F V +I L G+ S+R AEQ AA +VL + Sbjct: 177 LDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAK 222 >gi|254499135|ref|ZP_05111825.1| ribonuclease III [Legionella drancourtii LLAP12] gi|254351674|gb|EET10519.1| ribonuclease III [Legionella drancourtii LLAP12] Length = 228 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/217 (36%), Positives = 119/217 (54%), Gaps = 10/217 (4%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +RI Y F + L++ALTH S+ E+YER EFLGD IL +I+ LF+ F S EG Sbjct: 10 RRIDYHFEKPAFLKQALTHCSVG---SENYERFEFLGDSILSFVIANELFHRFPSQSEGH 66 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 LS + LV + ++ARELDL F+ + K SI +D +E++ AA++ DG Sbjct: 67 LSRLRSFLVRGDMLVEIARELDLGDFLFLGQGELKSGGFRRASILSDALEAVFAAVFFDG 126 Query: 131 GIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G++ A + K ++ R L+ +D+KT LQE+ A+ PEY + G +H+ Sbjct: 127 GVDAAKEVILKLYRSR-LEDPNLNDCLKDSKTRLQEYLQAEKIALPEYALIKVEGDEHEQ 185 Query: 188 RF--TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F T VE L QG ++R AEQ+AA +L++ Sbjct: 186 LFYITCTVEAEKLV-TQGEGSNRRKAEQLAAKAMLEQ 221 >gi|302554407|ref|ZP_07306749.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736] gi|302472025|gb|EFL35118.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736] Length = 274 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/215 (36%), Positives = 116/215 (53%), Gaps = 6/215 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 20 HTLLEGRLGYKVES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTH 78 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ ++V++ ++V R LDL SFIR+ SI AD +E++I Sbjct: 79 PDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVI 138 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G++ A V + + KS D KT LQE + PEY VT + Sbjct: 139 GAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT-ET 197 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 198 GPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 232 >gi|328885312|emb|CCA58551.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712] Length = 270 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/215 (36%), Positives = 116/215 (53%), Gaps = 6/215 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 17 HTLLEGRLGYQLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTH 75 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ ++V++ + V REL+L SFIR+ SI AD +E++I Sbjct: 76 PDLPEGQLAKLRAAVVNSRALADVGRELELGSFIRLGRGEEGTGGRDKASILADTLEAVI 135 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G++ A V + + KS D KT LQE A+ PEY V+ Sbjct: 136 GAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLVS-EE 194 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 195 GPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 229 >gi|307247515|ref|ZP_07529560.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249746|ref|ZP_07531725.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307254355|ref|ZP_07536193.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258813|ref|ZP_07540545.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306856018|gb|EFM88176.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858254|gb|EFM90331.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306862654|gb|EFM94610.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867164|gb|EFM99020.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 243 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 119/226 (52%), Gaps = 8/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 18 MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 75 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ++IAA+YLD G++ A V W Q L K G ++D KT LQE+ + P Y+V Sbjct: 135 AIIAAIYLDAGMDKAIEQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEV 193 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 G H+ F V +I L G+ S+R AEQ AA +VL + Sbjct: 194 LDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAK 239 >gi|331269661|ref|YP_004396153.1| ribonuclease III [Clostridium botulinum BKT015925] gi|329126211|gb|AEB76156.1| Ribonuclease III [Clostridium botulinum BKT015925] Length = 236 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 118/220 (53%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFD 64 + +E ++ F + +LL+ ALTHSS + + Y ERLEFLGD IL L IS LL+N ++ Sbjct: 10 NEVENKLNVKFNDINLLDTALTHSSFVNENKNIYSNERLEFLGDSILQLCISELLYNKYE 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +V + +VA+E ++ +I +S TSI +D VE++IA Sbjct: 70 QEPEGFLTKKRALIVCGNSLHEVAKEWNIGKYINMSKGEEMTGGRTRTSILSDCVEAIIA 129 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFG-VTPEYKVTFRS 181 ++YLD G EVA F+ + + + S + D KT+LQE KFG EY++ Sbjct: 130 SIYLDQGYEVAKKFIIDNFNEIIQKANSDQIILDYKTKLQETIQ-KFGDYNIEYRLVSFD 188 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H +F V I G SK+ AEQ AA E LK Sbjct: 189 GPPHRRKFITEVLIDSEVKGVGEGYSKKEAEQNAAKEALK 228 >gi|282861354|ref|ZP_06270419.1| ribonuclease III [Streptomyces sp. ACTE] gi|282564012|gb|EFB69549.1| ribonuclease III [Streptomyces sp. ACTE] Length = 274 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 119/219 (54%), Gaps = 6/219 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 16 TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R LDL SFIR+ SI AD + Sbjct: 75 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTL 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + +S D KT LQE ++ PEY V Sbjct: 135 EAVIGAVYLDQGLDAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T +GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 232 >gi|307260992|ref|ZP_07542674.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869294|gb|EFN01089.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 243 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 119/226 (52%), Gaps = 8/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 18 MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 75 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ++IAA+YLD G++ A V W Q L K G ++D KT LQE+ + P Y+V Sbjct: 135 AIIAAIYLDAGMDKAIEQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEV 193 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 G H+ F V +I L G+ S+R AEQ AA +VL + Sbjct: 194 LDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAK 239 >gi|190149854|ref|YP_001968379.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914985|gb|ACE61237.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 226 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 118/224 (52%), Gaps = 8/224 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 1 MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 58 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ++IAA+YLD G++ A V W Q L K G ++D KT LQE+ + P Y+V Sbjct: 118 AIIAAIYLDAGMDKAIEQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEV 176 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220 G H+ F V +I L G+ S+R AEQ AA +VL Sbjct: 177 LDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVL 220 >gi|94502127|ref|ZP_01308628.1| ribonuclease III [Oceanobacter sp. RED65] gi|94425729|gb|EAT10736.1| ribonuclease III [Oceanobacter sp. RED65] Length = 226 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 115/220 (52%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +RIGY F + S E ALTH S ++ ERLEFLGD I+ +++ LF F AKE Sbjct: 8 LSQRIGYTFNDISFFELALTHRSKGG---KNNERLEFLGDSIVNFVVAEALFEKFPQAKE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS LV T +++AR+ DL F+ + S K SI AD VE++I A+YL Sbjct: 65 GKLSRLRAGLVRGTTLAELARDFDLGEFLLLGSGELKSGGFNRESILADAVEAIIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G++ + ++ +R L+ +DAKT LQE P+Y+V +G HD Sbjct: 125 DSGLDTVRERILTWYGKRLDDLQLDDVVKDAKTRLQEHLQKNQSRLPKYEVMEITGQAHD 184 Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225 F V + L G+ S+R AEQ AA + L G+ Sbjct: 185 QNFKVSCWVETLPEVTIGLGSSRRLAEQSAAQKALNALGV 224 >gi|238650709|ref|YP_002916562.1| ribonuclease III [Rickettsia peacockii str. Rustic] gi|259646552|sp|C4K1R3|RNC_RICPU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238624807|gb|ACR47513.1| ribonuclease III [Rickettsia peacockii str. Rustic] Length = 227 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 119/223 (53%), Gaps = 9/223 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQES--YERLEFLGDRILGLLISTLLFN 61 + LEK + Y+F N+ LL +AL+H S+ H Y++ YERLEFLGD +L L+I+ +LF Sbjct: 4 FEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEILFR 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA--DVV 119 +F + EG L+ + LV ET V +L L ++I ++ ++V ++ + Sbjct: 64 NFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYIIMTHG--EEVAGGRDNLNNIENAT 121 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+LIAA+YLD IE ++K W + D KT LQEWA A P Y++ Sbjct: 122 EALIAAIYLDSNIETTHDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIK 181 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 R G H FTV+V++ G + + AE+ AA +L R Sbjct: 182 REGASHASTFTVLVKVKDYEQT-GTGHAIKEAEKNAARSLLHR 223 >gi|311693675|gb|ADP96548.1| ribonuclease 3 [marine bacterium HP15] Length = 229 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++RIGY F + L ALTH S + ++ ERLEFLGD I+ ++I+ LF HF+ A+E Sbjct: 10 LQRRIGYQFKSPERLLLALTHRSYGN---QNNERLEFLGDSIVNMVIAEYLFLHFEKARE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +V T +++ RE L +++R+ S K SI AD VES+I A+YL Sbjct: 67 GQLSRLRARMVKGVTLAEIGREFQLGTYLRLGSGELKSGGFRRESILADAVESIIGAIYL 126 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D V ++++ R L ++D KT LQE+ ++ P Y V G H+ Sbjct: 127 DSDFHTCREQVLRWFEHRLEKLDLQDTQKDPKTRLQEYLQSRQFPLPRYDVISVDGEAHN 186 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 F V + L G S+R AEQ AA LK G+ Sbjct: 187 QTFHVSCALPSLDRKTTGTGSSRRVAEQQAARNALKELGV 226 >gi|307263177|ref|ZP_07544798.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306871539|gb|EFN03262.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 243 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 118/224 (52%), Gaps = 8/224 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 18 MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 75 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ++IAA+YLD G++ A V W Q L K G ++D KT LQE+ + P Y+V Sbjct: 135 AIIAAIYLDAGMDKAIEQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEV 193 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220 G H+ F V +I L G+ S+R AEQ AA +VL Sbjct: 194 LDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVL 237 >gi|303248688|ref|ZP_07334942.1| ribonuclease III [Desulfovibrio fructosovorans JJ] gi|302489944|gb|EFL49870.1| ribonuclease III [Desulfovibrio fructosovorans JJ] Length = 233 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 117/223 (52%), Gaps = 9/223 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHF 63 + LE +G+ F LL ALTHSS ++ E+ ERLEFLGD +L L +S LF F Sbjct: 5 TALENALGHVFVRPELLTTALTHSSYANERGEAAKHNERLEFLGDAVLELSVSEELFARF 64 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGEL++ + LV+ + + +A L L I + S+ +DV E++I Sbjct: 65 PEAPEGELTLLRSQLVNESSLAAMALRLSLEDHILLGKGEENQGGRTRPSLLSDVFEAVI 124 Query: 124 AALYLDGGIEVAGTFVD----KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 AL+LDGG VA +FV+ + W R++ RD K+ LQE+ P Y + Sbjct: 125 GALFLDGGYGVAKSFVNATFAEVWPVRSVAPKT--RDYKSRLQEYTQKVHKARPVYTLLD 182 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP+HD RFTV +E+ M+ S + AEQ+AA L++ Sbjct: 183 SEGPEHDKRFTVRLELPDGHALTAMEKSVKKAEQMAARLALEK 225 >gi|212212136|ref|YP_002303072.1| ribonuclease III [Coxiella burnetii CbuG_Q212] gi|226741368|sp|B6IYZ9|RNC_COXB2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|212010546|gb|ACJ17927.1| ribonuclease III [Coxiella burnetii CbuG_Q212] Length = 233 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 125/218 (57%), Gaps = 7/218 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L +R+G+ F N LL+ ALTH S S ++ ERLEFLGD +LG +I++ L+ A Sbjct: 5 NKLMERLGHQFNNLELLKIALTHRS---SGADNNERLEFLGDSVLGFIIASELYQRRPQA 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS S+V+ + +Q++ +L + ++++ +K SI AD +E+++ ++ Sbjct: 62 REGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGSI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 Y+D G+E V ++ +R K ++DAK+ LQEW A+ P Y+V +G Sbjct: 122 YIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEVKI-TGEA 180 Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 H FTV + GL +G++ ++R AEQ+AA L+ Sbjct: 181 HAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218 >gi|239928705|ref|ZP_04685658.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672] gi|291437029|ref|ZP_06576419.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672] gi|291339924|gb|EFE66880.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672] Length = 286 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/215 (36%), Positives = 116/215 (53%), Gaps = 6/215 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 30 HTLLEGRLGYQVES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTH 88 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ ++V++ ++V R LDL SFIR+ SI AD +E++I Sbjct: 89 PDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVI 148 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G++ A V + + KS D KT LQE + PEY VT + Sbjct: 149 GAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT-ET 207 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 208 GPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 242 >gi|303256999|ref|ZP_07343013.1| ribonuclease III [Burkholderiales bacterium 1_1_47] gi|330999188|ref|ZP_08322907.1| ribonuclease III [Parasutterella excrementihominis YIT 11859] gi|302860490|gb|EFL83567.1| ribonuclease III [Burkholderiales bacterium 1_1_47] gi|329575388|gb|EGG56932.1| ribonuclease III [Parasutterella excrementihominis YIT 11859] Length = 228 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 120/229 (52%), Gaps = 14/229 (6%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF--- 60 L + LE+RIGY F N+ LL +A+TH S S E ERLEFLGD +L +I LF Sbjct: 2 LPLTVLEERIGYTFKNKELLRRAMTHRSFS---AEHNERLEFLGDSVLNCVIGNALFLKD 58 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 HFD EG LS ++LV +++A + ++ F++V + + + S AD VE Sbjct: 59 KHFD---EGSLSRVRSNLVRQSALAEIAERIGISDFLKVGAGEKHTGGNHRPSTIADAVE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQE-WAHAKFGVTPEYKV 177 ++ A++ DGG E A T + + ++ L +DAKT LQE FG+ P Y + Sbjct: 116 AIFGAVFTDGGFEEAQTVIIRLYEPMLSQLTPTTLGKDAKTNLQEVLQRMHFGL-PLYDI 174 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225 G HD F V V+I L + G+ S+R AEQ AA + L E I Sbjct: 175 VEIRGAPHDQEFEVRVDIPDLGISLTGVGKSRRQAEQDAAQKALDSEAI 223 >gi|294631623|ref|ZP_06710183.1| ribonuclease III [Streptomyces sp. e14] gi|292834956|gb|EFF93305.1| ribonuclease III [Streptomyces sp. e14] Length = 275 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 118/219 (53%), Gaps = 6/219 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 25 TASSHTLLEGRLGYRLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 83 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R LDL +FIR+ SI AD + Sbjct: 84 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTL 143 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS D KT LQE + PEY V Sbjct: 144 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLV 203 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T +GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 204 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 241 >gi|153871985|ref|ZP_02001008.1| Ribonuclease III [Beggiatoa sp. PS] gi|152071548|gb|EDN68991.1| Ribonuclease III [Beggiatoa sp. PS] Length = 225 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/217 (35%), Positives = 116/217 (53%), Gaps = 5/217 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+ L + +GY F L ALTH S+ + E RLEFLGD +L + + +L+ F S Sbjct: 5 YNHLCQALGYHFKQPEHLTTALTHRSVGTPHNE---RLEFLGDALLNCITAKMLYERFPS 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EG+L+ +LV +T ++A+ L+L ++R+ K + TS AD VE++I A Sbjct: 62 AREGQLTRLRANLVKRDTLVKIAQRLELGKYLRLGDGEIKSGGAKRTSTLADAVEAIIGA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +YLD ++ + W++ K S + +D KT LQE+ + P Y+V SG Sbjct: 122 IYLDSDMKTCQAVILPIWQESLSKLSLEKIKDPKTRLQEYLQERQQTLPIYRVLSTSGTP 181 Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVL 220 H+ F V I L P G S+R AEQ AAA+VL Sbjct: 182 HEQHFEVECRIPYLKEPTYGSGHSRRRAEQSAAAKVL 218 >gi|254514114|ref|ZP_05126175.1| ribonuclease III [gamma proteobacterium NOR5-3] gi|219676357|gb|EED32722.1| ribonuclease III [gamma proteobacterium NOR5-3] Length = 224 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 87/219 (39%), Positives = 122/219 (55%), Gaps = 6/219 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++ G N SLL +AL+H S+ + ERLEFLGD +LG ++S L+ F A E Sbjct: 7 LERQFGCRLQNGSLLTQALSHRSVGS---RNNERLEFLGDSVLGFVVSEELYRRFPDADE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS SLV + VARELDL +R+ + SI AD +E+L+ A+ L Sbjct: 64 GQLSRLRVSLVKGSALAAVARELDLGDQLRLGAGEIHGGGRRRDSILADTLEALLGAIVL 123 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D GIE + + ++ R ALK + R+D KT LQE+ + P+Y + +G DH Sbjct: 124 DLGIEACRAAISRVFQSRFDALKLEQARKDPKTRLQEFLQGRGRQLPDYVLCDAAGEDHA 183 Query: 187 PRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKREG 224 FTV E+S G AQG+ S+RAAEQ AA +L + G Sbjct: 184 KIFTVACELSDGDEVAQGVGESRRAAEQAAATAILAQLG 222 >gi|304310579|ref|YP_003810177.1| Ribonuclease III [gamma proteobacterium HdN1] gi|301796312|emb|CBL44520.1| Ribonuclease III [gamma proteobacterium HdN1] Length = 231 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 84/215 (39%), Positives = 112/215 (52%), Gaps = 7/215 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S L RIGY F + +LL ALTH S+S Q + ERLEFLGD +L L+I LF F Sbjct: 5 SLLCSRIGYTFNDFNLLNLALTHRSVSG--QTNNERLEFLGDSVLNLIIGGELFTKFPQG 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 KEG+LS SLV ET +Q+ E L F+ + K + S AD VE++I A+ Sbjct: 63 KEGQLSRLRASLVRGETLAQIGGEFGLGEFLILGPGEHKSGGARRESTLADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQE-WAHAKFGVTPEYKVTFRSGP 183 + + G A V +++ R AL +D KT LQE H K G+ PEY++ SG Sbjct: 123 FCESGYNEARKVVLRWFDSRIQALTLNDTVKDNKTRLQEILQHLKMGL-PEYRILSVSGS 181 Query: 184 DHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAA 217 H F + I+G+ G S+R AEQ AA Sbjct: 182 SHQQVFQIECAITGVEERFAGSGLSRRQAEQQAAG 216 >gi|261368258|ref|ZP_05981141.1| ribonuclease III [Subdoligranulum variabile DSM 15176] gi|282569773|gb|EFB75308.1| ribonuclease III [Subdoligranulum variabile DSM 15176] Length = 225 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 121/226 (53%), Gaps = 10/226 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57 M+ + L++ + Y F N +LL ALTH+S ++ + ERLEFLGD +L ++ + Sbjct: 1 MATHKPEELQEVLHYQFKNPALLRIALTHTSYANESKVPTTHNERLEFLGDSVLSVVAAD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF+ D EGEL+ SLVS + Q A+E+ L ++R+ S+ +D Sbjct: 61 YLFHQSDRP-EGELTRMRASLVSEDALFQFAQEIRLGDYLRLGHGEDLGGGRNRPSVVSD 119 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYK 176 E++IAALYLDGG+EVA +F+ + L GK D KT LQE Y+ Sbjct: 120 AFEAVIAALYLDGGLEVARSFILPF-----LSEGKTAEEDYKTRLQEVVQQNPSARLRYE 174 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V +GPDH +FTV V A+G+ SK+AAEQ AA + L R Sbjct: 175 VEGETGPDHAKQFTVAVYCDDKRLAEGVGRSKKAAEQHAAKQALDR 220 >gi|164688568|ref|ZP_02212596.1| hypothetical protein CLOBAR_02213 [Clostridium bartlettii DSM 16795] gi|164602981|gb|EDQ96446.1| hypothetical protein CLOBAR_02213 [Clostridium bartlettii DSM 16795] Length = 233 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 119/220 (54%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDS 65 E++I Y F N+ + +ALTHSS S+ ++Y ERLEFLGD +L ++IS LF Sbjct: 14 FEQKINYEFKNKEYILEALTHSSYSNE-NKNYPFNERLEFLGDSVLSIVISDYLFKKETK 72 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL+ ++V E+ S+V++ + L ++ + SI AD +E++IAA Sbjct: 73 LPEGELTKIRANIVCEESLSEVSKNIHLGKYMLLGKGEEATGGRERISILADALEAVIAA 132 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGGI+ A F+ ++ S GK RD KT LQE + YK+ GP Sbjct: 133 IYLDGGIKCAREFILTNMEKIINDSIKGKIFRDYKTCLQEVLQSNGENNIWYKLIEEKGP 192 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH+ RF + V I+ G SK+ AEQVAA L ++ Sbjct: 193 DHNKRFVMEVGINDTVLGVGEGKSKKDAEQVAAKCALDKK 232 >gi|167040357|ref|YP_001663342.1| ribonuclease III [Thermoanaerobacter sp. X514] gi|256750709|ref|ZP_05491594.1| ribonuclease III [Thermoanaerobacter ethanolicus CCSD1] gi|300914441|ref|ZP_07131757.1| ribonuclease III [Thermoanaerobacter sp. X561] gi|307724323|ref|YP_003904074.1| ribonuclease III [Thermoanaerobacter sp. X513] gi|166854597|gb|ABY93006.1| Ribonuclease III [Thermoanaerobacter sp. X514] gi|256750292|gb|EEU63311.1| ribonuclease III [Thermoanaerobacter ethanolicus CCSD1] gi|300889376|gb|EFK84522.1| ribonuclease III [Thermoanaerobacter sp. X561] gi|307581384|gb|ADN54783.1| ribonuclease III [Thermoanaerobacter sp. X513] Length = 246 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHF 63 S LE+RI Y+F +++LL +ALTHSS +H + S ERLEFLGD +L L+IS L+ + Sbjct: 21 SELEERINYSFKDKNLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEYLYKNR 80 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +EG LS +V + ++ ARE++L +F+R+ SI AD +E+++ Sbjct: 81 KDLEEGSLSKYRAEIVCEPSLARCAREIELGNFLRIGKGEELTGGRERDSILADAMEAIL 140 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLDGG+EV + + +K + G RD KT+LQE + Y++ Sbjct: 141 AAVYLDGGLEVVRNVILELFKNIIEEVLEGLIYRDYKTKLQEVVQSMEIGKIIYELIEEM 200 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDH+ F V I + +G SK+ AEQ AA E L + GI Sbjct: 201 GPDHNKTFVTQVRIGDVILGKGYGKSKKEAEQAAAMEALIKLGI 244 >gi|134299915|ref|YP_001113411.1| ribonuclease III [Desulfotomaculum reducens MI-1] gi|189043307|sp|A4J683|RNC_DESRM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|134052615|gb|ABO50586.1| RNAse III [Desulfotomaculum reducens MI-1] Length = 246 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 116/224 (51%), Gaps = 7/224 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64 L+ R+G+ + N +LL +ALTHSS H + +RLEFLGD +L L+IS L+ F Sbjct: 11 LKTRLGFKWHNPTLLIQALTHSSCVHENRGHGLCHNQRLEFLGDAVLELIISEHLYKMFP 70 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ S V + ++VAR LDL +R+ + SI AD E+L+ Sbjct: 71 DRTEGELTKMRASSVCEPSLAKVARGLDLGRCLRMGRGEERSGGRERPSILADAFEALLG 130 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G+E++ FV + +G+ RD KTELQE Y + SG Sbjct: 131 AIYLDQGLEISRHFVLNCLSSIIDDVVAGRLDRDYKTELQEILQQSSPDPLTYTIMDESG 190 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR-EGI 225 PDHD FT V G +G SK+ AEQ AA + + EG+ Sbjct: 191 PDHDKTFTAGVIYKGKVIGKGSGHSKKEAEQQAAKDAFQHLEGM 234 >gi|307545610|ref|YP_003898089.1| ribonuclease III [Halomonas elongata DSM 2581] gi|307217634|emb|CBV42904.1| ribonuclease III [Halomonas elongata DSM 2581] Length = 229 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 114/213 (53%), Gaps = 6/213 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +RIG+ FA LLE A+TH S + ERLEFLGD I+ +I+ LF F A+EG+ Sbjct: 10 RRIGHRFAQPELLELAMTHRSYGG---RNNERLEFLGDSIVNFVIAEDLFQRFPQAREGQ 66 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 LS LV +T +++ARE+ +R+ S K SI AD VE++I A+YLD Sbjct: 67 LSRLRARLVKGQTLAELAREMSFGECLRLGSGEMKSGGHRRDSILADAVEAVIGAIYLDA 126 Query: 131 GIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G++ A T V ++ +R + ++D KT LQE+ ++ P Y+V G H Sbjct: 127 GMDTARTRVLSWFAERLETINLQDTQKDPKTRLQEFLQSRQVALPRYEVISVEGEAHAQT 186 Query: 189 FTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220 FTV + L G+ S+R AEQ AA + L Sbjct: 187 FTVECHVEMLDEHTLGIGSSRRHAEQQAAEQAL 219 >gi|225551799|ref|ZP_03772742.1| ribonuclease III [Borrelia sp. SV1] gi|225371594|gb|EEH01021.1| ribonuclease III [Borrelia sp. SV1] Length = 245 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 114/212 (53%), Gaps = 9/212 (4%) Query: 17 FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F+N LL+ AL HSS S+ + + ERLEFLGD +L L+I+ L+ + + EGELS Sbjct: 29 FSNFDLLDTALCHSSYSNELDQKSSNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSK 88 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + +VS ++ S +ARE++L S+I + + I AD +E+ + A+YLD G Sbjct: 89 ARSYIVSEDSLSNIAREINLGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFL 148 Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 A FV D Y + G F +D K+ LQE+ K+ ++P YK+ GPDHD F Sbjct: 149 RATEFVVGLFDMYIRL-MFNRGDF-KDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVF 206 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V + + + G SK+ AE AA LK Sbjct: 207 CVELYVGENFISNGKGKSKKEAEMRAAEVALK 238 >gi|325478725|gb|EGC81836.1| ribonuclease III [Anaerococcus prevotii ACS-065-V-Col13] Length = 236 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 69/214 (32%), Positives = 119/214 (55%), Gaps = 6/214 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 E +IGY+F ++ L++ A THSS ++ + +S ERLEFLGD IL +++S +LF H+++ Sbjct: 14 FENKIGYSFNDKELIDVAFTHSSYTNEARGESKSNERLEFLGDSILDMIVSEILFKHYNN 73 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG L+ + LV + ++ + D++S++ ++ ++AD E++ AA Sbjct: 74 KPEGWLTKTRSRLVCTSSFAKACEKFDMSSYLNFGKGEKEHGGHLKKHVKADTFEAVCAA 133 Query: 126 LYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLD E + K +K+ AL D KT+LQE+ +AK +Y++ G Sbjct: 134 IYLDSSYEKLFDILVKNYKEEALVIINDDSIFNDYKTKLQEYHNAKDKKILKYELVKEEG 193 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 P+H FT+ V++ A G+ +K+ AEQ AA Sbjct: 194 PEHAKTFTMAVKLGNRILATGVGKNKKQAEQDAA 227 >gi|167623017|ref|YP_001673311.1| ribonuclease III [Shewanella halifaxensis HAW-EB4] gi|189043349|sp|B0TIV7|RNC_SHEHH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|167353039|gb|ABZ75652.1| Ribonuclease III [Shewanella halifaxensis HAW-EB4] Length = 225 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/215 (37%), Positives = 120/215 (55%), Gaps = 5/215 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + +GY F ++ L++ALTH S S+ + E RLEFLGD IL ++IS L++ F +A E Sbjct: 10 LCRTLGYEFTEQAFLDQALTHRSASNKHNE---RLEFLGDSILSIVISDALYHQFPTATE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV + +++A E L ++++ K SI AD VE++I A+YL Sbjct: 67 GDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELKSGGFRRESILADAVEAIIGAIYL 126 Query: 129 DGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 D IE + V K+++ R + ++D KT LQE P YKV G H+ Sbjct: 127 DSEIEKCRSLVLKWYESRLKVIEPINQKDPKTLLQEHLQKFRKPLPVYKVVHTEGDAHEQ 186 Query: 188 RFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 FTV + L+ A G+ S+R AEQ AAA+VL+ Sbjct: 187 TFTVECIVEDLSQAVVGVASSRRKAEQSAAAQVLE 221 >gi|323451297|gb|EGB07175.1| hypothetical protein AURANDRAFT_6264 [Aureococcus anophagefferens] Length = 227 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 118/220 (53%), Gaps = 8/220 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +L KR+ + F + LE ALTH S +H+ +ERLEFLGDR+LGL+++ L +H+ Sbjct: 3 SLSKRLDHDFDDLDHLEAALTHPSTGAHASTGRFERLEFLGDRVLGLVVAEWLHDHYPDE 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQADVVESLIAA 125 EGE +R + LV E VA L L +R S L + ++ AD +E+++ A Sbjct: 63 DEGESQIRHSGLVRTEALVAVAGGLRLDGHVRAKSHGLWVSRSNSNDTMVADALEAIVGA 122 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +++DGG + V K W K+ RD KT LQE A P Y+ ++GP Sbjct: 123 VFVDGGYAASKRVVLKAWAPLLAKADATPPLRDPKTRLQEHAQKHKRPLPTYETIRKTGP 182 Query: 184 DHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVL 220 DHDP TV + A A+GM SKRAA +AAA++L Sbjct: 183 DHDPTITVQAHYGDRTANATAKGMHPSKRAA-SMAAAKIL 221 >gi|225019245|ref|ZP_03708437.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum DSM 5476] gi|224947876|gb|EEG29085.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum DSM 5476] Length = 228 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 117/226 (51%), Gaps = 13/226 (5%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHF 63 EK IGY F N+ LLE+ALTHSS ++ + ++ ERLEFLGD ++ L+I+ LF +F Sbjct: 3 NFEKTIGYTFHNQKLLEQALTHSSFTNETGRHHHKNNERLEFLGDSVVSLIIANHLFVNF 62 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EGEL+ SLV + ++ A +DL + + + S D E+L+ Sbjct: 63 PDMPEGELTKLRASLVCDRSLAEFAGRIDLGNQLIMGKGEEHSGGRQRRSNLEDAFEALV 122 Query: 124 AALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF--- 179 A+YLDGG+E A +FV + K L S D KT LQE PE K+++ Sbjct: 123 GAIYLDGGLEAARSFVLGFIPKTLDLNSISRVTDYKTALQEIIQK----NPEEKLSYVLV 178 Query: 180 -RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGPDHD F V ++ G SK+ AEQ AA + L+ G Sbjct: 179 SESGPDHDKMFEAEVHLNSNVIGTGSGKSKKQAEQNAAKQALELMG 224 >gi|309805468|ref|ZP_07699513.1| ribonuclease III [Lactobacillus iners LactinV 09V1-c] gi|312872453|ref|ZP_07732522.1| ribonuclease III [Lactobacillus iners LEAF 2062A-h1] gi|312874441|ref|ZP_07734471.1| ribonuclease III [Lactobacillus iners LEAF 2052A-d] gi|312874574|ref|ZP_07734599.1| ribonuclease III [Lactobacillus iners LEAF 2053A-b] gi|315653376|ref|ZP_07906298.1| ribonuclease III [Lactobacillus iners ATCC 55195] gi|325911776|ref|ZP_08174180.1| ribonuclease III [Lactobacillus iners UPII 143-D] gi|308165119|gb|EFO67357.1| ribonuclease III [Lactobacillus iners LactinV 09V1-c] gi|311089965|gb|EFQ48384.1| ribonuclease III [Lactobacillus iners LEAF 2053A-b] gi|311090053|gb|EFQ48467.1| ribonuclease III [Lactobacillus iners LEAF 2052A-d] gi|311092035|gb|EFQ50410.1| ribonuclease III [Lactobacillus iners LEAF 2062A-h1] gi|315489301|gb|EFU78941.1| ribonuclease III [Lactobacillus iners ATCC 55195] gi|325476282|gb|EGC79444.1| ribonuclease III [Lactobacillus iners UPII 143-D] Length = 225 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 119/220 (54%), Gaps = 7/220 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + L+++ F N LLE+ALTHSS S+ +Q ++YE+LEFLGD +L L IS L+ HF Sbjct: 8 NELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISDYLYRHFP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGEL+ +++V E SQ A E + +++ K ++ DV E+ Sbjct: 68 NMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLEDVFEAFNG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL+LD G+ F+ + G F RD KTELQE + +YKV Sbjct: 128 ALFLDQGMPAVQHFL-HLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYKVI--DS 184 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + P+FTV + ++G +QG+ SK+AAEQVAA+ LK Sbjct: 185 DEAQPKFTVQLIVAGENISQGIGRSKKAAEQVAASVALKN 224 >gi|308234556|ref|ZP_07665293.1| ribonuclease III [Atopobium vaginae DSM 15829] gi|328944154|ref|ZP_08241619.1| ribonuclease III [Atopobium vaginae DSM 15829] gi|327492123|gb|EGF23897.1| ribonuclease III [Atopobium vaginae DSM 15829] Length = 233 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 109/221 (49%), Gaps = 3/221 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 R E+ I Y F N+ L++ A+TH S SYERLEFLGD ILG +++T +F Sbjct: 6 RIKHAEQIIEYTFENKRLIQAAITHPSAVEGLPVSASYERLEFLGDSILGAIVATDMFEK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ SLVS +T S VA EL + I + TS +V ESL Sbjct: 66 FPGMDEGALTRMKISLVSGKTLSMVAEELGIGECIIFGDSEKGTGVRGFTSALENVYESL 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + ALYL+ G E F+ + + K K+ LQE +F + P Y++ + Sbjct: 126 VGALYLEAGYEPTVKFIRRTLTPYMVPELAKHPISPKSRLQEVCQKRFHIAPVYELEDET 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H P+FT V + G +G SK+ ++ +AA L + Sbjct: 186 GPAHAPQFTSAVFVDGELMGRGTGSSKKESQSIAALSALDK 226 >gi|268593250|ref|ZP_06127471.1| ribonuclease III [Providencia rettgeri DSM 1131] gi|291311145|gb|EFE51598.1| ribonuclease III [Providencia rettgeri DSM 1131] Length = 226 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/216 (35%), Positives = 116/216 (53%), Gaps = 6/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++++GY F LL +ALTH S S + E RLEFLGD IL +I+ L++ F E Sbjct: 9 LQRKLGYQFKQNELLIQALTHRSASSKHNE---RLEFLGDSILSFVIANDLYHRFPKVDE 65 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++ARE +L +R+ K SI AD VE+LI ++L Sbjct: 66 GDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGIFL 125 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D I+ + +++ R + G ++D KT LQE+ + P Y V G HD Sbjct: 126 DSDIQTIERIILDWYQSRLVEISPGDKQKDPKTRLQEYLQGRHLPLPNYLVVQVKGEAHD 185 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 FT+ ++SG+ P G+ S+R AEQ AA + LK Sbjct: 186 QEFTIHCQVSGIDQPINGVGSSRRKAEQAAAEQALK 221 >gi|289578474|ref|YP_003477101.1| ribonuclease III [Thermoanaerobacter italicus Ab9] gi|297544750|ref|YP_003677052.1| ribonuclease III [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528187|gb|ADD02539.1| ribonuclease III [Thermoanaerobacter italicus Ab9] gi|296842525|gb|ADH61041.1| ribonuclease III [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 246 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 122/224 (54%), Gaps = 5/224 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHF 63 S LEK+I Y+F N+ LL +ALTHSS +H + S ERLEFLGD +L L+IS L+ + Sbjct: 21 SELEKKINYSFKNKDLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEYLYKNR 80 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +EG LS +V + ++ ARE+ L +F+ + S+ AD +E+L+ Sbjct: 81 KDLEEGSLSKYRAEIVCEPSLARCAREIGLGNFLLIGKGEEMTGGRERDSLLADAMEALL 140 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLDGG+EV + ++ + G RD KT+LQE + Y++ Sbjct: 141 AAVYLDGGLEVVRNIILDLFRNIIEEVLEGLIYRDYKTKLQEVVQSMGIGKITYELVKEI 200 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDH+ F V I +A +G SK+ AEQ AA E L + GI Sbjct: 201 GPDHNKTFITKVRIGDVALGEGYGKSKKEAEQAAAMEALVKLGI 244 >gi|33593415|ref|NP_881059.1| ribonuclease III [Bordetella pertussis Tohama I] gi|33597819|ref|NP_885462.1| ribonuclease III [Bordetella parapertussis 12822] gi|33602721|ref|NP_890281.1| ribonuclease III [Bordetella bronchiseptica RB50] gi|81424808|sp|Q7VW39|RNC_BORPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|81426476|sp|Q7W5J6|RNC_BORPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|81429935|sp|Q7WD32|RNC_BORBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|33572771|emb|CAE42703.1| ribonuclease III [Bordetella pertussis Tohama I] gi|33574248|emb|CAE38580.1| ribonuclease III [Bordetella parapertussis] gi|33577163|emb|CAE35720.1| ribonuclease III [Bordetella bronchiseptica RB50] gi|332382824|gb|AEE67671.1| ribonuclease III [Bordetella pertussis CS] Length = 256 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 121/223 (54%), Gaps = 14/223 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+A+ +TLE R+ + F +++LLE+ALTH S H + + ERLEFLGD +L +++ +LF Sbjct: 1 MTAMSLATLETRLDHRFGDKALLEQALTHRS--HGARHN-ERLEFLGDSVLNFVVAAMLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG+LS +LV + + +A+ LDL+ ++R+ K SI AD VE Sbjct: 58 ERYGKLDEGDLSRLRANLVKQASLADIAQRLDLSQYLRLGEGELKSGGFRRPSILADTVE 117 Query: 121 SLIAALYLDGGIEVA-GTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVT 178 +L A++LD G E A V +Y A K +DAKT LQE+ + P+Y V Sbjct: 118 ALFGAVFLDAGFEAARRVIVRQYQPVMAHVDPKTLGKDAKTLLQEFLQGRKLALPQYTVV 177 Query: 179 FRSGPDHDPRFTV-----VVEISGLAPAQGMDCSKRAAEQVAA 216 G H +F V +EI +AP S+RAAEQ AA Sbjct: 178 ATHGAAHSQQFEVECAIPALEIKIVAPG----ASRRAAEQSAA 216 >gi|222824476|ref|YP_002576050.1| ribonuclease III [Campylobacter lari RM2100] gi|222539697|gb|ACM64798.1| ribonuclease III [Campylobacter lari RM2100] Length = 222 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 117/220 (53%), Gaps = 8/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++R+ Y F N LL +ALTH S Y ERLEFLGD ++ L++ LF F E Sbjct: 5 LQERLNYHFKNEQLLIEALTHKSYKKPYNN--ERLEFLGDAVMDLVVGEFLFFKFQKESE 62 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS +LV+ ++ + +A++LDL I +S + SI +D E+L+ A+YL Sbjct: 63 GNLSKLRAALVNEKSFANLAQKLDLGECIFMSIAEENNDGRNKPSILSDAFEALMGAMYL 122 Query: 129 DGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G E +A +++ + + + +D KT+LQE A TPEY V GPD Sbjct: 123 EIGFEKTKNIALNLLNEVYPH--IDTQSLFKDYKTKLQEITQANMAGTPEYIVVNAFGPD 180 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H +F + ++I G A+ + SK+ A+Q A L++ G Sbjct: 181 HKKQFEIAIKIQGKEFARAIAGSKKEAQQQCAKIALEKLG 220 >gi|260913782|ref|ZP_05920258.1| ribonuclease III [Pasteurella dagmatis ATCC 43325] gi|260632321|gb|EEX50496.1| ribonuclease III [Pasteurella dagmatis ATCC 43325] Length = 225 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 79/218 (36%), Positives = 116/218 (53%), Gaps = 10/218 (4%) Query: 9 LEKRIGYAFANRSLLEKALTH--SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L++++GY+F SLLE+ALTH +SI+H+ ERLEFLGD IL L I+ L++ F Sbjct: 8 LQRKLGYSFNQVSLLEQALTHRSASINHN-----ERLEFLGDAILNLTIAEALYHQFPKC 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS +LV T + +AR+ +L ++ + K SI AD VE++I A+ Sbjct: 63 NEGELSRMRATLVREPTLAILARKFELGDYLSLGPGELKSGGFRRESILADCVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LD + V ++K +K G ++D KT LQE+ K P Y V G Sbjct: 123 SLDSNLPKTSKIVCNWYKSLLEEIKPGDNQKDPKTRLQEYLQGKRLPLPNYNVVDIKGEA 182 Query: 185 HDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 H FTV + + G+ S+R AEQ AA ++L+ Sbjct: 183 HCQTFTVECYVKNIDRTFIGIGASRRKAEQAAAEKILQ 220 >gi|306833964|ref|ZP_07467088.1| ribonuclease III [Streptococcus bovis ATCC 700338] gi|304423965|gb|EFM27107.1| ribonuclease III [Streptococcus bovis ATCC 700338] Length = 228 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 8/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M AL + L++ G F +++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MQALD-TKLQQDFGIVFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+LS + +V E+ + +R FI++ + K +I Sbjct: 60 QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL +D G+E F+++ + K G F R D KT LQE VT + Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEK-GNFERVKDYKTTLQELLQGHGDVTID 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y+V+ SGP H F V V ++ A +QG+ SK+ AEQ AA L Sbjct: 179 YRVSNESGPAHAKVFEVTVYVNDKAKSQGIGKSKKLAEQDAAKNAL 224 >gi|119358263|ref|YP_912907.1| ribonuclease III [Chlorobium phaeobacteroides DSM 266] gi|119355612|gb|ABL66483.1| RNAse III [Chlorobium phaeobacteroides DSM 266] Length = 273 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 114/226 (50%), Gaps = 16/226 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNH 62 LE G N L + ALTH S+ H Y+ +S +RLEFLGD +LGLLIS LF + Sbjct: 44 LETCAGSKGGNLFLYQTALTHRSVVHDYEHATPAVQSNQRLEFLGDAVLGLLISDYLFRN 103 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F ++EGELS +V+ ++ + AR + L + + K+ S AD ESL Sbjct: 104 FPDSREGELSSNRAKIVNRKSLAGFARSIGLGKHLIIGESADKNKIRSSESALADAFESL 163 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKFGVTPEYK 176 I A+YLD G++ A FV K + A FR + K++L E+ + P YK Sbjct: 164 IGAIYLDKGLDAAFAFVMKQITEHA----DFRSIVAAEHNYKSQLIEYTQSHHLPPPVYK 219 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V G +H+ FT+ V + QG K+ AEQ+AA E + R Sbjct: 220 VIAEEGAEHEKTFTIEVSVDDRQMGQGTAPRKKDAEQLAAREAIDR 265 >gi|171909524|ref|ZP_02924994.1| putative Ribonuclease III [Verrucomicrobium spinosum DSM 4136] Length = 238 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/191 (36%), Positives = 101/191 (52%), Gaps = 5/191 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +LE RI Y F LL++ALTH S+ S + Q +RLE+LGD +L L++S +++ F Sbjct: 3 SLESRIAYQFKQPELLQEALTHPSLPYESKNPQRHNQRLEYLGDAVLQLVLSEAIYHQFP 62 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ LV T + +AR+L L + + + S ADV+ES+I Sbjct: 63 LDDEGLLTKLRTRLVQTRTLAHIARQLCLGRDLLLGKGEESNGGRSRESTLADVMESIIG 122 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLDGGIE FV ++W AL+ + K +LQE + G TP Y++ G Sbjct: 123 AVYLDGGIEAVRPFVLQHWSHDLAALQHSPVELNPKGQLQELLQGEGGNTPTYRIIAAEG 182 Query: 183 PDHDPRFTVVV 193 PDH F VV Sbjct: 183 PDHQKVFQAVV 193 >gi|88812349|ref|ZP_01127599.1| ribonuclease III [Nitrococcus mobilis Nb-231] gi|88790356|gb|EAR21473.1| ribonuclease III [Nitrococcus mobilis Nb-231] Length = 226 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 120/220 (54%), Gaps = 6/220 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y L++R+GY F+ +LL +ALTH S ++ + ERLEFLGD +L +++ +F+ Sbjct: 5 YDRLQERLGYRFSESTLLVRALTHRS---AFGPNNERLEFLGDSVLNFVVAAEVFDRRKQ 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EGELS LV+ + + +AREL L +R+ K SI +D +E+++ A Sbjct: 62 AREGELSRLRAKLVNQASLADIARELALGEALRLGGGEMKAGGQRRDSILSDTLEAIVGA 121 Query: 126 LYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD G + + + + + R L S + +D KT LQE + PEY+V +G Sbjct: 122 VYLDAGFAICREVIRRLYGNRLRELPSIRELKDPKTRLQEHLQSIRLPLPEYRVLEIAGR 181 Query: 184 DHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKR 222 H F V I G+ G+ S+R AEQ AAA +L+R Sbjct: 182 AHAQTFQVECRIIGVETVTHGLANSRRQAEQKAAASMLQR 221 >gi|121595570|ref|YP_987466.1| ribonuclease III [Acidovorax sp. JS42] gi|120607650|gb|ABM43390.1| RNAse III [Acidovorax sp. JS42] Length = 228 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 73/197 (37%), Positives = 106/197 (53%), Gaps = 5/197 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M STL++R+ + F++ SLL++ALTH S S + E RLEFLGD +L L +S+LLF Sbjct: 1 MQPASLSTLQQRLQHQFSDASLLQRALTHRSFSADHNE---RLEFLGDSVLSLAVSSLLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EGELS LV ++ Q+A L L +R+ K SI AD +E Sbjct: 58 RRMRDLPEGELSRVRALLVKQDSLHQIAVRLQLPPVLRLGEGEAKSGGKLRPSILADALE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD G E A V + ++ L + + +DAKT LQEW + P+Y+V Sbjct: 118 AIIGAVYLDAGYECAEQLVHRLFEGVELSPRLQEAAKDAKTALQEWLQGRKMNLPQYRVV 177 Query: 179 FRSGPDHDPRFTVVVEI 195 +G H+ F V E+ Sbjct: 178 STTGAAHNQVFHVECEV 194 >gi|222111791|ref|YP_002554055.1| ribonuclease iii [Acidovorax ebreus TPSY] gi|221731235|gb|ACM34055.1| ribonuclease III [Acidovorax ebreus TPSY] Length = 228 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/197 (37%), Positives = 106/197 (53%), Gaps = 5/197 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M STL++R+ + F++ SLL++ALTH S S + E RLEFLGD +L L +S+LLF Sbjct: 1 MQPASLSTLQQRLQHQFSDASLLQRALTHRSFSADHNE---RLEFLGDSVLSLAVSSLLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EGELS LV ++ Q+A L L +R+ K SI AD +E Sbjct: 58 RRMRDLPEGELSRVRALLVKQDSLHQIAVRLQLPPVLRLGEGEAKSGGKLRPSILADALE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD G E A V + ++ L + + +DAKT LQEW + P+Y+V Sbjct: 118 AIIGAVYLDAGYECAEQLVHRLFEGVELSPRLQEAAKDAKTALQEWLQGRKMNLPQYRVV 177 Query: 179 FRSGPDHDPRFTVVVEI 195 +G H+ F V E+ Sbjct: 178 STTGAAHNQVFHVECEV 194 >gi|126208025|ref|YP_001053250.1| ribonuclease III [Actinobacillus pleuropneumoniae L20] gi|189043287|sp|A3MZQ9|RNC_ACTP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|126096817|gb|ABN73645.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 223 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 117/223 (52%), Gaps = 8/223 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF F Sbjct: 1 MQLERLQKKLSYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALFEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ L ++R+ + K SI +D VE++I Sbjct: 58 PKANEGELSRMRATLVREQTLAILARQFGLGEYMRLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 AA+YLD G++ A V W Q L K G ++D KT LQE+ + P Y+V Sbjct: 118 AAIYLDAGMDKAIEQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDI 176 Query: 181 SGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 G H+ F V +I L G+ S+R AEQ AA +VL + Sbjct: 177 KGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAK 219 >gi|27364934|ref|NP_760462.1| ribonuclease III [Vibrio vulnificus CMCP6] gi|31076872|sp|Q8DC76|RNC_VIBVU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|27361080|gb|AAO09989.1| ribonuclease III [Vibrio vulnificus CMCP6] Length = 225 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 109/204 (53%), Gaps = 6/204 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +++GY F + LL ALTH S + + E RLEFLGD IL +I+ L++ F E Sbjct: 8 LTRQLGYQFQDDELLNLALTHRSANSKHNE---RLEFLGDSILSFVIADELYHRFPKVNE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++ RE L ++++ K SI AD VE++I A+YL Sbjct: 65 GDMSRMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAVYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D +EV V ++ R A+K G ++D KT LQE+ + P Y VT G H+ Sbjct: 125 DSDLEVVRGIVLNWYTSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHN 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKR 209 FTV +I+G+ P G S+R Sbjct: 185 QEFTVECDIAGMDKPVVGRGTSRR 208 >gi|67459568|ref|YP_247192.1| ribonuclease III [Rickettsia felis URRWXCal2] gi|75536032|sp|Q4UKA8|RNC_RICFE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|67005101|gb|AAY62027.1| Ribonuclease III [Rickettsia felis URRWXCal2] Length = 225 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 5/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQES--YERLEFLGDRILGLLISTLLFN 61 + LEK +GY+F N+ LL +AL+H S+ H Y++ YERLEFLGD +L L+++ +LF Sbjct: 4 FEKLEKLLGYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVVTEILFK 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +F + EG L+ + LV ET V +L L +I ++ + + E+ Sbjct: 64 NFANYNEGNLAKIRSYLVCKETICVVGTKLTLKDYIIMTHGEEVAGGRDNPNNIENATEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 LIAA+YLD IE + K W + D KT LQEWA A P Y++ R Sbjct: 124 LIAAIYLDSNIETTRNIIGKLWAEFIKIQNLTDYDPKTALQEWAQASSHHLPIYRLIKRE 183 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G H FTV+V++ G S + AE+ AA ++L + Sbjct: 184 GAAHSSTFTVLVKVKDYKQI-GTGHSIKEAEKNAARKLLHK 223 >gi|295111283|emb|CBL28033.1| ribonuclease III, bacterial [Synergistetes bacterium SGP1] Length = 251 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/217 (32%), Positives = 117/217 (53%), Gaps = 5/217 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L+ +GY+F + LLE+AL H+S + H S ERLEFLGD +LG +++ L+ + Sbjct: 29 AALQAALGYSFRDEGLLEEALCHASFANEHGLAVSNERLEFLGDSVLGFVVARALYRLYP 88 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A+EG+L+ + LV + AREL+L I +R + + TS+ D VE+L+ Sbjct: 89 EAREGDLTQKRAELVCGRSLRDRARELNLPPLILHGHSVRDE--ALPTSMCEDAVEALLG 146 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+ LDGG++ A + + + Q A + K+ LQ W A+ P Y++ +GP Sbjct: 147 AVCLDGGVQAAEGVIGRLFLQEAEVRAETDVSPKSRLQTWLQARRIPLPTYELVSVTGPS 206 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H P F V + ++G+ +++ AE AA VL+ Sbjct: 207 HAPSFRVRLRVNGVE-HTACGSTRKGAESDAAERVLE 242 >gi|124515064|gb|EAY56575.1| ribonuclease III [Leptospirillum rubarum] Length = 247 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 117/224 (52%), Gaps = 9/224 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFN 61 S LE R+ Y F LLE+A TH S + + ERLEFLGD +LGL+++ L Sbjct: 8 SELEDRLRYRFRKIDLLEEATTHKSFMNEGRRLGVTRNNERLEFLGDTVLGLVVAEYLMV 67 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG LS +VS T + V+R L + F+ + +S+ AD +E+ Sbjct: 68 TYPKYPEGILSKFKGRVVSEPTLASVSRALGIGGFLLIGKGEELTQGREKSSLLADAMEA 127 Query: 122 LIAALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +IAA+YLD G++ A TF+ +++ ++ + + D KT+LQE+ + P Y+V Sbjct: 128 VIAAIYLDSGLDAARTFIIGHFRSVIEQTVHEDSIQ-DYKTDLQEYCQRELETLPVYQVM 186 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + GPDH F V V I G +G SK+ AEQ AA + L R Sbjct: 187 DQRGPDHQKEFDVAVLIRGKIYGEGSGKSKKEAEQKAAKDALSR 230 >gi|15892080|ref|NP_359794.1| ribonuclease III [Rickettsia conorii str. Malish 7] gi|22654066|sp|Q92JB0|RNC_RICCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|15619202|gb|AAL02695.1| ribonuclease III [Rickettsia conorii str. Malish 7] Length = 227 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 9/223 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQES--YERLEFLGDRILGLLISTLLFN 61 + LEK + Y+F N+ LL +AL+H S+ H Y++ YERLEFLGD +L L+I+ +LF Sbjct: 4 FEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEILFR 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA--DVV 119 +F + EG L+ + LV ET V +L L ++I ++ ++V ++ + Sbjct: 64 NFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYIIMTHG--EEVAGGRDNLNNIENAT 121 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+LIAA+YLD IE ++ W + D KT LQEWA A P Y++ Sbjct: 122 EALIAAIYLDSNIETTHDIIENLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIK 181 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 R G H FTV+V++ G + + AE+ AA +L R Sbjct: 182 REGASHSSTFTVLVKVKDYEQT-GTGHTIKEAEKNAARSLLHR 223 >gi|288905744|ref|YP_003430966.1| Ribonuclease III [Streptococcus gallolyticus UCN34] gi|306831841|ref|ZP_07464997.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978776|ref|YP_004288492.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732470|emb|CBI14042.1| Ribonuclease III [Streptococcus gallolyticus UCN34] gi|304426039|gb|EFM29155.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178704|emb|CBZ48748.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 228 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 8/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M AL + L++ G F +++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MQALD-TKLQRDFGIVFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+LS + +V E+ + +R FI++ + K +I Sbjct: 60 QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL +D G+E F+++ + K G F R D KT LQE VT + Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEK-GNFERVKDYKTTLQELLQGHGDVTID 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y+V+ SGP H F V V ++ A +QG+ SK+ AEQ AA L Sbjct: 179 YRVSNESGPAHAKVFEVTVYVNDEAKSQGIGRSKKLAEQDAAKNAL 224 >gi|320155320|ref|YP_004187699.1| ribonuclease III [Vibrio vulnificus MO6-24/O] gi|56749444|sp|Q7MHN8|RNC_VIBVY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|319930632|gb|ADV85496.1| ribonuclease III [Vibrio vulnificus MO6-24/O] Length = 225 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 109/204 (53%), Gaps = 6/204 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +++GY F + LL ALTH S + + E RLEFLGD IL +I+ L++ F E Sbjct: 8 LTRQLGYQFQDDELLNLALTHRSANSKHNE---RLEFLGDSILSFVIADELYHRFPKVNE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++ RE L ++++ K SI AD VE++I A+YL Sbjct: 65 GDMSRMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAVYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D +EV V ++ R A+K G ++D KT LQE+ + P Y VT G H+ Sbjct: 125 DSDLEVVRGIVLNWYASRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHN 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKR 209 FTV +I+G+ P G S+R Sbjct: 185 QEFTVECDIAGMDKPVVGRGTSRR 208 >gi|270304349|gb|ACZ71259.1| RNAse type III [Escherichia coli BL21] Length = 226 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRRASRKHNE---RLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ + K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGTGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++L+ I+ + +++ R + G ++D KT + E+ + P Y V Sbjct: 118 ALIGGVFLESDIQTVEKLILNWYQTRVDEISPGDKQKDPKTRVHEYLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL+ P G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 222 >gi|221194650|ref|ZP_03567707.1| ribonuclease III [Atopobium rimae ATCC 49626] gi|221185554|gb|EEE17944.1| ribonuclease III [Atopobium rimae ATCC 49626] Length = 243 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 108/224 (48%), Gaps = 3/224 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 R EK + F R L+E ALTH S SYERLEFLGD ILG +++T LF Sbjct: 6 RIRAAEKICNHVFKRRDLIEAALTHPSAVEDKPVSASYERLEFLGDSILGAIVATDLFER 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EGEL+ SLVS T S VA L + I R M S +V ES+ Sbjct: 66 YPEMDEGELTRLKISLVSGHTLSLVAEALGIGPLIITGVSERGTGGRGMRSALENVYESI 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRS 181 + ALYLD G E FV + + R K+ LQE A TPEY++ S Sbjct: 126 VGALYLDAGYEPTHEFVIRTLAPHISPALAERSVSPKSRLQEAVQANGKSTPEYELVSES 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GP H P F VV + G +G SK+AAE AA + L R G+ Sbjct: 186 GPAHTPTFISVVSVDGCKVGRGQGHSKKAAEAAAAQDALVRLGV 229 >gi|293391848|ref|ZP_06636182.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952382|gb|EFE02501.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D7S-1] Length = 226 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + L+++I Y F N LL++ALTH S H + E RLEFLGD IL L I LF Sbjct: 1 MKENQLERLQRQINYRFQNIELLKQALTHRSAGHQHNE---RLEFLGDAILNLTIGEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ L +I + K SI AD VE Sbjct: 58 HQFPKCNEGELSRMRATLVREPTLALLARDFKLGDYILLGQGELKSGGFRRESILADCVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD + A V ++++ + +K G ++DAKT LQE+ P Y + Sbjct: 118 AIIGAISLDSNLTNATQIVCQWYQNLLKEIKPGDNQKDAKTRLQEYLQGNRLPLPTYNIV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V I G S+R AEQ AA ++L+ I Sbjct: 178 NIQGEAHNQLFIVECSIQNSDRTFIGKGSSRRKAEQAAAEQILQELNI 225 >gi|319787580|ref|YP_004147055.1| ribonuclease III [Pseudoxanthomonas suwonensis 11-1] gi|317466092|gb|ADV27824.1| ribonuclease III [Pseudoxanthomonas suwonensis 11-1] Length = 230 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 81/218 (37%), Positives = 118/218 (54%), Gaps = 6/218 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + + RIG+AFA+ SLL++ALTH S + E RLEFLGD ++ L+ + L+ + A Sbjct: 7 TVVRDRIGHAFADPSLLQQALTHRSAGSPHNE---RLEFLGDAVVNLIAAEALYQRWPKA 63 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ LV + + +AREL L + + K SI AD +E+++AA+ Sbjct: 64 DEGVLTRARAELVREASLAVIARELQLGERLTLGPGELKSGGFRRDSILADALEAVVAAI 123 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G + V +++Q AL G+ +DAKT LQEW + P Y++ SG D Sbjct: 124 YLDAGYDACRAHVLPWFEQSIAALPVGQPGKDAKTRLQEWLQGRGKPLPAYELVSESGED 183 Query: 185 HDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLK 221 H F +S A A+G S+R AEQ AAA VL+ Sbjct: 184 HAKVFLARCTLSEPPASAEGQGTSRRLAEQAAAAAVLE 221 >gi|56459918|ref|YP_155199.1| RNase III, dsRNA-specific ribonuclease [Idiomarina loihiensis L2TR] gi|81363596|sp|Q5R106|RNC_IDILO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56178928|gb|AAV81650.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina loihiensis L2TR] Length = 229 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 6/206 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LEK +GY+F + LL +A+TH S S ++ E RLEFLGD ILGL+I+ L+ F Sbjct: 9 TELEKIVGYSFEQQGLLHQAMTHRSASSTHNE---RLEFLGDSILGLVIAEALYQKFPKV 65 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS ++V + +++ +++ L F+ + K SI AD VE++I A+ Sbjct: 66 AEGDLSRMRAAIVCGRSLAKLGKKMGLGDFLSLGQGELKSGGYRRESILADAVEAIIGAI 125 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD ++ + +++ + ++ G ++D KT LQE A+ PEY V G Sbjct: 126 YLDSDMDTIRQVILNWFEPQLTLIEPGTSQKDPKTRLQELLQARQKPLPEYDVVATQGQA 185 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKR 209 H+ +FTV + G+ +P +G S+R Sbjct: 186 HNQQFTVNCSVEGIESPFKGTGTSRR 211 >gi|145300361|ref|YP_001143202.1| ribonuclease III [Aeromonas salmonicida subsp. salmonicida A449] gi|142853133|gb|ABO91454.1| ribonuclease III [Aeromonas salmonicida subsp. salmonicida A449] Length = 223 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 6/222 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ + L+ R+G+ F ++ LL +ALTH S + E RLEFLGD IL L+I+ LF+ F Sbjct: 3 IKMNRLQSRLGHVFHDKELLTRALTHRSAGSRHNE---RLEFLGDSILSLVIADALFHRF 59 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EG+LS +LV +T +++ RE DL + + K SI AD VE++I Sbjct: 60 PQAAEGDLSRMRATLVREKTLAELGREFDLGDDLILGPGELKSGGFRRESILADTVEAVI 119 Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD +E + ++ R +K G ++D KT LQE P Y VT Sbjct: 120 GAVYLDTDLEAVRVLLLSWYASRLDEIKPGIEQKDPKTRLQEILQGSRKSLPTYTVTNVK 179 Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 G H+ FTV ++ GL P G+ S+R AEQ AA + L+R Sbjct: 180 GEAHNQEFTVQCDVEGLDGPLVGVGTSRRKAEQAAAQQALER 221 >gi|268318202|ref|YP_003291921.1| ribonuclease III [Rhodothermus marinus DSM 4252] gi|262335736|gb|ACY49533.1| ribonuclease III [Rhodothermus marinus DSM 4252] Length = 260 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 78/210 (37%), Positives = 110/210 (52%), Gaps = 6/210 (2%) Query: 19 NRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 N +L E+ALTH S+ S+ S ERLEFLGD +LG +++ L+ HF EG L+ Sbjct: 39 NAALYEQALTHRSVLRGQPDSHLHSNERLEFLGDAVLGFVVAAYLYEHFPDRNEGFLTRL 98 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 LV+ E +Q AR L L + +R+S ++ + SI +D E+L+ A+YLD G+E Sbjct: 99 RAKLVNREALAQAARRLGLGAHVRLSENMERAGGRDNDSILSDAFEALVGAIYLDLGLEA 158 Query: 135 AGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 A FV++ RR + K+ L E+A A+ P Y+V GP H FTV Sbjct: 159 ARAFVERALLAPLDLEALARRPDNYKSLLLEFAQARGWPQPRYRVVAEEGPSHARTFTVE 218 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 I +G SK+ AEQ AA E L R Sbjct: 219 AWIGNRRLGRGTAGSKKQAEQQAAREALAR 248 >gi|313888515|ref|ZP_07822182.1| ribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845544|gb|EFR32938.1| ribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b] Length = 231 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 119/230 (51%), Gaps = 11/230 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ LE+++ Y F ++ LLE ALTHSS + + ES ERLEFLGD +LGL+I Sbjct: 1 MTFSNLKNLERKLNYDFKDKGLLETALTHSSYVNENKMKQYESNERLEFLGDAVLGLVIG 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 + +F EG L+ V+ + +A+ L+L FIR +K+ S S A Sbjct: 61 EYFYKNFPKDLEGSLTKMRAESVNEKVLFFIAKGLELGDFIRFGKGEKKNGGSKRESTSA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 D +E+LI A++LD A V D++ K+ A K F D KT LQE + G Sbjct: 121 DALEALIGAIFLDSNFNNAKKIVLNLFDEFLKEDAYKL--FNVDFKTMLQEEVQ-RSGQK 177 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 EYK+ GPD+D F + + + +G +K+ ++Q AA E L+R Sbjct: 178 AEYKLVREEGPDNDKTFFTELYLDEVLAGKGSGKTKKESQQEAAREALER 227 >gi|319760660|ref|YP_004124598.1| ribonuclease III [Candidatus Blochmannia vafer str. BVAF] gi|318039374|gb|ADV33924.1| ribonuclease III [Candidatus Blochmannia vafer str. BVAF] Length = 231 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 122/224 (54%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS+L ++ L+ ++GY F LLE ALTH S S+ + E RLEFLGD IL +++ LL+ Sbjct: 1 MSSLDFNVLQGKLGYFFCKLDLLELALTHRSFSNQHNE---RLEFLGDAILNYVVANLLY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ EG++S ++LV ++T ++A+E ++ ++++ K+ SI ++ VE Sbjct: 58 HRYNCISEGDMSRIRSNLVCSKTLVRLAKEFNVGEYLKLGQGELKNGGISRESILSNTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I ++LD ++ ++ ++ A+ ++D KT LQE+ P Y V Sbjct: 118 AIIGGVFLDSNMKTVEILINNWYLCHLNAINFMNKQKDPKTRLQEYLQRHGCPLPIYYVN 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 G H FT+ +IS L P+ G S + AEQ AA LK Sbjct: 178 RIQGKAHSQMFTIFCQISQLTDPSIGYGSSIQKAEQSAAENALK 221 >gi|322420696|ref|YP_004199919.1| ribonuclease III [Geobacter sp. M18] gi|320127083|gb|ADW14643.1| ribonuclease III [Geobacter sp. M18] Length = 224 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 121/207 (58%), Gaps = 2/207 (0%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE ++GY F+NR LLE+ALTH + ++ + + +RLEF GD +L L+S LL F ++ Sbjct: 4 LEGKLGYRFSNRELLEEALTHRTYANEAGGKDNQRLEFFGDAVLDFLLSDLLLQRFPDSR 63 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EGEL+ +LV + +++A L+L + +R+ K S+ AD E+L+AALY Sbjct: 64 EGELTKMRAALVDEVSLARIAAGLELGAALRLGRGEEKGGGRQKRSLLADAFEALLAALY 123 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 LDGG++ A V + ++ + RDAKTELQE A G P Y++ +GPDHD Sbjct: 124 LDGGVDTARRVVHELFEPLLCRPEILCGRDAKTELQERARLLRGKLPRYQLKQVTGPDHD 183 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQ 213 RFTV + + +G+ +K+ AEQ Sbjct: 184 RRFTVEIFLGSELMGEGVGRTKKEAEQ 210 >gi|318056548|ref|ZP_07975271.1| ribonuclease III [Streptomyces sp. SA3_actG] gi|318076722|ref|ZP_07984054.1| ribonuclease III [Streptomyces sp. SA3_actF] Length = 275 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 121/220 (55%), Gaps = 8/220 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 19 AASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V+R LDL +FIR+ SI AD + Sbjct: 78 YRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTL 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEW-AHAKFGVTPEYK 176 E++I A+YLD G++ A V + + KS + D KT LQE A GV PEY Sbjct: 138 EAVIGAVYLDQGLDKAAELVHRLFDPLIEKSAELGAGLDWKTSLQELTAMEGLGV-PEYL 196 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 VT GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 197 VT-EEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 235 >gi|261868615|ref|YP_003256537.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413947|gb|ACX83318.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D11S-1] Length = 226 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + L+++I Y F N LL++ALTH S H + E RLEFLGD IL L I LF Sbjct: 1 MKENQLERLQRQINYRFQNIELLKQALTHRSAGHQHNE---RLEFLGDAILNLTIGEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ L +I + K SI AD VE Sbjct: 58 HQFPKCNEGELSRMRATLVREPTLALLARDFKLGDYILLGQGELKSGGFRRESILADCVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD + A V ++++ + +K G ++DAKT LQE+ P Y + Sbjct: 118 AIIGAISLDSSLTNATQIVCQWYQNLLKEIKPGDNQKDAKTRLQEYLQGNRLPLPTYNIV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V I G S+R AEQ AA ++L+ I Sbjct: 178 NIQGEAHNQLFIVECSIQNSDRTFIGKGSSRRKAEQAAAEQILQELNI 225 >gi|302522137|ref|ZP_07274479.1| ribonuclease III [Streptomyces sp. SPB78] gi|302431032|gb|EFL02848.1| ribonuclease III [Streptomyces sp. SPB78] Length = 286 Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 121/220 (55%), Gaps = 8/220 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 30 AASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 88 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V+R LDL +FIR+ SI AD + Sbjct: 89 YRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTL 148 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEW-AHAKFGVTPEYK 176 E++I A+YLD G++ A V + + KS + D KT LQE A GV PEY Sbjct: 149 EAVIGAVYLDQGLDKAAELVHRLFDPLIEKSAELGAGLDWKTSLQELTAMEGLGV-PEYL 207 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 VT GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 208 VT-EEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 246 >gi|289768866|ref|ZP_06528244.1| ribonuclease III [Streptomyces lividans TK24] gi|289699065|gb|EFD66494.1| ribonuclease III [Streptomyces lividans TK24] Length = 276 Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 77/215 (35%), Positives = 116/215 (53%), Gaps = 6/215 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 31 HTLLEGRLGYQLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTH 89 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ ++V++ ++V R L+L SFIR+ SI AD +E++I Sbjct: 90 PDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVI 149 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G++ A V + + KS D KT LQE + PEY VT + Sbjct: 150 GAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT-ET 208 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 209 GPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 243 >gi|21223928|ref|NP_629707.1| ribonuclease III [Streptomyces coelicolor A3(2)] gi|256784973|ref|ZP_05523404.1| ribonuclease III [Streptomyces lividans TK24] gi|7531197|sp|Q9ZBQ7|RNC_STRCO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|4007731|emb|CAA22415.1| ribonuclease III [Streptomyces coelicolor A3(2)] Length = 272 Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 77/215 (35%), Positives = 116/215 (53%), Gaps = 6/215 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 27 HTLLEGRLGYQLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTH 85 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ ++V++ ++V R L+L SFIR+ SI AD +E++I Sbjct: 86 PDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVI 145 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G++ A V + + KS D KT LQE + PEY VT + Sbjct: 146 GAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT-ET 204 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 205 GPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 239 >gi|121605952|ref|YP_983281.1| ribonuclease III [Polaromonas naphthalenivorans CJ2] gi|120594921|gb|ABM38360.1| RNAse III [Polaromonas naphthalenivorans CJ2] Length = 233 Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 81/216 (37%), Positives = 113/216 (52%), Gaps = 8/216 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+KR+ + FA LL +ALTH S S + E R+EFLGD +L L ++ LL+ E Sbjct: 14 LQKRLQHEFAKPKLLVQALTHRSFSSDHNE---RIEFLGDSVLNLAVAGLLYEQLSELPE 70 Query: 69 GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G+LS VR N LV +T Q+A L L +R+ + S+ AD +E++I A+Y Sbjct: 71 GDLSRVRAN-LVKQDTLHQLAVVLGLPDLLRLGEGEARSGGKNRPSMLADALEAVIGAVY 129 Query: 128 LDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD G + A V + +K Q + +D KTELQEW + P YKV G H Sbjct: 130 LDAGYDQADQLVRRLFKDVQVNPQMKAIGKDPKTELQEWLQGRKMRLPLYKVVSTMGAAH 189 Query: 186 DPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220 F V EI+ A+ G+ S+RA EQ AA +L Sbjct: 190 QQTFEVECEIAEFGRAERGIGVSRRAGEQAAATAML 225 >gi|166031773|ref|ZP_02234602.1| hypothetical protein DORFOR_01474 [Dorea formicigenerans ATCC 27755] gi|166028226|gb|EDR46983.1| hypothetical protein DORFOR_01474 [Dorea formicigenerans ATCC 27755] Length = 233 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 76/216 (35%), Positives = 115/216 (53%), Gaps = 5/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LE RIGY F + +LL+KA++HSS + E ERLEFLGD +L L+ S LF Sbjct: 10 LEHRIGYTFQDFALLKKAMSHSSYVNEEHLPKYECNERLEFLGDAVLELVSSEFLFFEHP 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGEL+ S+V + ARE++L ++ + S+ +D +E+LI Sbjct: 70 TTPEGELTKTRASMVCEPALAFCAREIELGEYLLLGKGEDATGGRKRESVTSDAMEALIG 129 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+Y+DGG A F++++ + L++ K D+KT LQE A F Y + GPD Sbjct: 130 AIYVDGGFANAKEFINRFI-LKDLENKKLFYDSKTILQEIVQAHFKEELSYHLVGEEGPD 188 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 HD F V ++I G +K++AEQ AA + + Sbjct: 189 HDKTFQVELQIGEQVYGIGKGRTKKSAEQEAAYKTI 224 >gi|160892686|ref|ZP_02073476.1| hypothetical protein CLOL250_00216 [Clostridium sp. L2-50] gi|156865727|gb|EDO59158.1| hypothetical protein CLOL250_00216 [Clostridium sp. L2-50] Length = 230 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 117/224 (52%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ R+ +E IGY F + LL ALTH S ++ + ESYER EFLGD IL ++S Sbjct: 1 MNTERFHNIEDIIGYTFRDLDLLVTALTHKSYANERKINKVESYERSEFLGDAILEFVVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ ++ EG+L+ SLV T SQ+++EL ++ +S SI Sbjct: 61 EYLYQNYPEYPEGKLTKLRASLVCEFTLSQISKELKFGHYVLLSKGEDLTGGRNRNSIMC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D+ E+++ A+YLDGG++ A FV ++ F DAK+ LQE A K T Y Sbjct: 121 DLFEAVLGAIYLDGGLDEAKKFVHRFLLDDVETHSLF-YDAKSTLQELAQ-KEEKTLTYA 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + GPDH+ + V I+G A G S++A+EQ AA L Sbjct: 179 LLEEKGPDHNKSYVSEVCINGEHVATGEGASRKASEQTAAYNAL 222 >gi|183599777|ref|ZP_02961270.1| hypothetical protein PROSTU_03285 [Providencia stuartii ATCC 25827] gi|188022041|gb|EDU60081.1| hypothetical protein PROSTU_03285 [Providencia stuartii ATCC 25827] Length = 226 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L++++GY F LL +ALTH S + + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPSLLEQLQRKLGYKFNQHDLLIQALTHRSANSKHNE---RLEFLGDSILSFVIANDLY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIEKIILDWYQTRLNEISPGDKQKDPKTRLQEYLQGRHLPLPNYIVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 G HD FT+ ++SG+ P G+ S+R AEQ AA + LK Sbjct: 178 QVKGEAHDQEFTIHCQVSGIEQPINGVGSSRRKAEQAAAEQALK 221 >gi|37681015|ref|NP_935624.1| ribonuclease III [Vibrio vulnificus YJ016] gi|37199765|dbj|BAC95595.1| dsRNA-specific ribonuclease [Vibrio vulnificus YJ016] Length = 259 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 109/204 (53%), Gaps = 6/204 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +++GY F + LL ALTH S + + E RLEFLGD IL +I+ L++ F E Sbjct: 42 LTRQLGYQFQDDELLNLALTHRSANSKHNE---RLEFLGDSILSFVIADELYHRFPKVNE 98 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++ RE L ++++ K SI AD VE++I A+YL Sbjct: 99 GDMSRMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAVYL 158 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D +EV V ++ R A+K G ++D KT LQE+ + P Y VT G H+ Sbjct: 159 DSDLEVVRGIVLNWYASRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHN 218 Query: 187 PRFTVVVEISGL-APAQGMDCSKR 209 FTV +I+G+ P G S+R Sbjct: 219 QEFTVECDIAGMDKPVVGRGTSRR 242 >gi|325294757|ref|YP_004281271.1| ribonuclease 3 [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065205|gb|ADY73212.1| Ribonuclease 3 [Desulfurobacterium thermolithotrophum DSM 11699] Length = 234 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 91/232 (39%), Positives = 125/232 (53%), Gaps = 10/232 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTL 58 M + LE++I Y F ++ LL+KALTH S S +E+YE LEFLGD ++GL++S Sbjct: 1 MEKKSFEELERKINYFFKDKKLLKKALTHKSFSFEKDSEENYEVLEFLGDAVIGLIVSEE 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L F + EGELS LVS + S++A+ +DL S+I + +SI DV Sbjct: 61 LIKRFPTKTEGELSQIRAFLVSEPSLSELAKTVDLGSYIYLGKGEHLSGGREKSSILCDV 120 Query: 119 VESLIAALYLDGGIEVAG-----TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 ESL A+YLDGG E A F+ K W+ L+ +D K+ LQE +F V P Sbjct: 121 FESLFGAIYLDGGFENAKEVFKRNFLMKLWE--ILEEAVTYKDFKSFLQEVTQKEFKVIP 178 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 Y V GP+H+ FTV + L SKR+AEQ AA E+LK G+ Sbjct: 179 SYSVIKAEGPEHEKIFTVECRVKDLKTV-STGKSKRSAEQQAAKEMLKVLGV 229 >gi|251791907|ref|YP_003006627.1| ribonuclease III [Aggregatibacter aphrophilus NJ8700] gi|247533294|gb|ACS96540.1| ribonuclease III [Aggregatibacter aphrophilus NJ8700] Length = 226 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 76/216 (35%), Positives = 112/216 (51%), Gaps = 6/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+++I Y F + LL++ALTH S H + E RLEFLGD IL L I+ LF+ F E Sbjct: 9 LQRKIDYQFQDTGLLKQALTHRSAGHKHNE---RLEFLGDAILNLTIAEALFHQFPKCNE 65 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +LV T + +AR+ L ++ + K SI AD VE++I A+ L Sbjct: 66 GELSRMRATLVREPTLAILARDFQLGDYLSLGQGELKSGGFRRESILADCVEAIIGAISL 125 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D + A V ++++ + ++ G ++DAKT LQE+ P Y + G H+ Sbjct: 126 DSNLTNATEIVTRWYQPLLKDIQPGDNQKDAKTRLQEYLQGNRLPVPTYNIVNIQGEAHN 185 Query: 187 PRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 FTV I G S+R AEQ AA ++L+ Sbjct: 186 QLFTVECSIQNNDRTFIGKGSSRRKAEQAAAEQILQ 221 >gi|302874772|ref|YP_003843405.1| ribonuclease III [Clostridium cellulovorans 743B] gi|307690613|ref|ZP_07633059.1| ribonuclease III [Clostridium cellulovorans 743B] gi|302577629|gb|ADL51641.1| ribonuclease III [Clostridium cellulovorans 743B] Length = 235 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 116/221 (52%), Gaps = 6/221 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 R LE+++ +F N LL ALTHSS + + + ERLEFLGD +L L IS LF Sbjct: 7 RIRILEEQLNVSFENIDLLNTALTHSSFVNQKKHIDYNERLEFLGDSVLQLTISEYLFKE 66 Query: 63 FDSAKEGELSVRFNSLVSAE-TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EGEL+ R SL+ E + V R+ ++ +F+ +S TSI AD VE+ Sbjct: 67 LHGKSEGELT-RLRSLIVCENSLHSVGRDWNIGNFLLMSKGEELTGGRSRTSILADAVEA 125 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +IAA+YLD G + A F+ ++K+ K D KT LQE ++ YK+ Sbjct: 126 VIAAIYLDKGYDAAREFILLHFKEVINLALDNKIVLDYKTRLQEVLQKDGEISIAYKLEK 185 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP H RF V +E++ G SK+ AEQ+AA EVL Sbjct: 186 YDGPPHRRRFFVNLEVANKVLGSGEGFSKKEAEQMAAKEVL 226 >gi|16331055|ref|NP_441783.1| ribonuclease III [Synechocystis sp. PCC 6803] gi|2500554|sp|P74368|RNC1_SYNY3 RecName: Full=Ribonuclease 3 1; AltName: Full=Ribonuclease III 1; Short=RNase III 1 gi|1653550|dbj|BAA18463.1| ribonuclease III [Synechocystis sp. PCC 6803] Length = 231 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 112/213 (52%), Gaps = 12/213 (5%) Query: 25 KALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +ALTH S H SY+RLEFLGD +LG ++ +LF + E EL+ + LV+ Sbjct: 17 EALTHRSYCNEHPGTPSYDRLEFLGDAVLGFVVGRILFERYPHFTEAELTRLRSQLVNQN 76 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV--- 139 + +AR L +A IR+S L +D SI ADV ESL+ A LD G+ F+ Sbjct: 77 QLAYLARFLHIAPEIRLSQSLARDDGQSSPSILADVFESLLGAALLDRGLTAVEDFIQEL 136 Query: 140 -----DKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 +++ K + +S K D K+ LQ+WA AK PEY++ SGP H FT Sbjct: 137 FVPILEQWEKSQDGRSPKLVPTMDVKSMLQQWALAKTKQLPEYELINTSGPPHAQEFTFT 196 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 V+++G QG SK+ A + AA E LK G+ Sbjct: 197 VKVAGKIHGQGSGPSKQIATKQAALEALKSLGL 229 >gi|239948355|ref|ZP_04700108.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes scapularis] gi|239922631|gb|EER22655.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes scapularis] Length = 567 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 9/223 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQES--YERLEFLGDRILGLLISTLLFN 61 + LEK + Y+F N+ LL +AL+H S+ H Y++ YERLEFLGD +L L+I+ +LF Sbjct: 4 FEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEILFK 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA--DVV 119 +F + EG L+ + LV ET V +L L +I ++ ++V + + Sbjct: 64 NFANYNEGNLAKIRSYLVCKETICMVGAKLALKDYIIMTHG--EEVVGGRDNPNNIENAT 121 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+LIAA+YLD IE + K W++ D KT LQEWA A P Y++ Sbjct: 122 EALIAAIYLDSNIETTHNIIGKLWEEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIK 181 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 R G H FTV+V++ G S + AE+ AA +L R Sbjct: 182 REGAAHSSTFTVLVKVKDYE-QTGTGHSIKEAEKNAARSLLHR 223 >gi|302558162|ref|ZP_07310504.1| ribonuclease III [Streptomyces griseoflavus Tu4000] gi|302475780|gb|EFL38873.1| ribonuclease III [Streptomyces griseoflavus Tu4000] Length = 272 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/215 (35%), Positives = 116/215 (53%), Gaps = 6/215 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 16 HTLLEGRLGYRLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTH 74 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ ++V++ ++V R L+L SFIR+ SI AD +E++I Sbjct: 75 PDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVI 134 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G++ A V + + KS D KT LQE + PEY VT + Sbjct: 135 GAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT-ET 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 194 GPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 228 >gi|157960865|ref|YP_001500899.1| ribonuclease III [Shewanella pealeana ATCC 700345] gi|189043351|sp|A8H1C7|RNC_SHEPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157845865|gb|ABV86364.1| Ribonuclease III [Shewanella pealeana ATCC 700345] Length = 225 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/215 (36%), Positives = 119/215 (55%), Gaps = 5/215 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + +GY F ++ L++ALTH S S+ + E RLEFLGD IL ++IS L++ F +A E Sbjct: 10 LCRTLGYEFNEKAFLDQALTHRSASNKHNE---RLEFLGDSILSIVISDALYHQFPAATE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV + +++A E L ++++ K SI AD VE++I A+YL Sbjct: 67 GDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELKSGGFRRESILADAVEAIIGAIYL 126 Query: 129 DGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 D IE V +++ R + ++D KT LQE+ P Y+V G H+ Sbjct: 127 DSDIENCRQLVLNWYESRLKVIEPINQKDPKTLLQEYLQKYRKPLPVYRVAHTEGDAHEQ 186 Query: 188 RFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 FTV + L+ A G+ S+R AEQ AAA+VL+ Sbjct: 187 TFTVECIVEDLSQAVVGVASSRRKAEQSAAAQVLE 221 >gi|333024194|ref|ZP_08452258.1| putative ribonuclease III [Streptomyces sp. Tu6071] gi|332744046|gb|EGJ74487.1| putative ribonuclease III [Streptomyces sp. Tu6071] Length = 314 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/216 (37%), Positives = 119/216 (55%), Gaps = 8/216 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 62 HTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTH 120 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ ++V++ ++V+R LDL +FIR+ SI AD +E++I Sbjct: 121 PDLPEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVI 180 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEW-AHAKFGVTPEYKVTFR 180 A+YLD G++ A V + + KS + D KT LQE A GV PEY VT Sbjct: 181 GAVYLDQGLDKAAELVHRLFDPLIEKSAELGAGLDWKTSLQELTAMEGLGV-PEYLVT-E 238 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 239 EGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 274 >gi|315634822|ref|ZP_07890104.1| ribonuclease III [Aggregatibacter segnis ATCC 33393] gi|315476374|gb|EFU67124.1| ribonuclease III [Aggregatibacter segnis ATCC 33393] Length = 226 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+++I Y F + +LL++ALTH S H++ E RLEFLGD IL L I+ LF+ F E Sbjct: 9 LQRKIDYHFQDVALLKQALTHRSAGHNHNE---RLEFLGDAILNLTIAEALFHLFPKCNE 65 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +LV T + +AR+ L ++ + K SI AD VE++I A+ L Sbjct: 66 GELSRMRATLVREPTLAILARDFQLGDYLSLGQGELKSGGFRRESILADCVEAIIGAISL 125 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D + A V+++++ +K G ++DAKT LQE+ P Y V G H+ Sbjct: 126 DSSLTHATQIVNRWYQTLLENIKPGDNQKDAKTRLQEYLQGNRQPLPTYNVVSIQGEAHN 185 Query: 187 PRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225 F V IS G S+R AEQ AA ++L+ I Sbjct: 186 QLFIVECSISDNDRTFIGKGSSRRKAEQAAAEQILQELNI 225 >gi|153816163|ref|ZP_01968831.1| hypothetical protein RUMTOR_02411 [Ruminococcus torques ATCC 27756] gi|317500483|ref|ZP_07958707.1| ribonuclease III [Lachnospiraceae bacterium 8_1_57FAA] gi|331089416|ref|ZP_08338315.1| ribonuclease III [Lachnospiraceae bacterium 3_1_46FAA] gi|145846498|gb|EDK23416.1| hypothetical protein RUMTOR_02411 [Ruminococcus torques ATCC 27756] gi|316898238|gb|EFV20285.1| ribonuclease III [Lachnospiraceae bacterium 8_1_57FAA] gi|330404784|gb|EGG84322.1| ribonuclease III [Lachnospiraceae bacterium 3_1_46FAA] Length = 228 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 113/205 (55%), Gaps = 5/205 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESY---ERLEFLGDRILGLLISTLLFNHFD 64 LE++IGY F N S LE+A+ HSS ++ ++ E Y ERLEFLGD +L L+ S LF Sbjct: 8 LEQKIGYRFRNFSFLEQAMMHSSYTNEHRMEKYRCNERLEFLGDAVLELISSEFLFRQSP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ S+V ++ + AR++DL S++ + F S+ +D +E+LI Sbjct: 68 KVPEGELTKTRASMVCEQSLAMCARDIDLGSYLLLGKGEEVTGGRFRDSVTSDALEALIG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG A F+ ++ + K D+KT LQE A+ EY + GPD Sbjct: 128 AIYLDGGFTNAKEFIHRFVLTDQ-EDKKLFYDSKTILQEIVQAEKLGEIEYHLIGEEGPD 186 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209 H+ F+V + I G + +G +K+ Sbjct: 187 HNKSFSVELTIRGRSYGKGKGRTKK 211 >gi|303251584|ref|ZP_07337758.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649582|gb|EFL79764.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 223 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 117/223 (52%), Gaps = 8/223 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF F Sbjct: 1 MQLERLQKKLSYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALFEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ L ++++ + K SI +D VE++I Sbjct: 58 PKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 AA+YLD G++ A V W Q L K G ++D KT LQE+ + P Y+V Sbjct: 118 AAIYLDAGMDKAIAQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDI 176 Query: 181 SGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 G H+ F V +I L G+ S+R AEQ AA +VL + Sbjct: 177 KGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAK 219 >gi|291277478|ref|YP_003517250.1| ribonuclease III [Helicobacter mustelae 12198] gi|290964672|emb|CBG40527.1| ribonuclease III [Helicobacter mustelae 12198] Length = 223 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 114/213 (53%), Gaps = 8/213 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LEK I Y F N+ LL ALTH S + +++ ERLE+LGD +L LLI L+ F K Sbjct: 3 NLEKAINYHFKNQDLLLTALTHKSCKN--KKNNERLEYLGDAVLDLLIGEFLYQEFPEHK 60 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS +LV+ ++ + A+ + L FI +SS+ + SI + E+LI A+Y Sbjct: 61 EGDLSKMRAALVNEQSFMRFAKAIHLQDFILISSNEETNQGREKPSILSSAFEALIGAVY 120 Query: 128 LDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 L+ G+E + + K + + + + D KT LQE A F P+Y++ GP Sbjct: 121 LEAGLERAKDITYHLLHKLYPK--IDTQSLFTDYKTALQELTQAHFHEIPKYELLEEIGP 178 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 DH +F V V I A+ + SK++A+Q A Sbjct: 179 DHCKKFKVSVYIQNQEYAKAIGTSKKSAQQNCA 211 >gi|229825033|ref|ZP_04451102.1| hypothetical protein GCWU000182_00383 [Abiotrophia defectiva ATCC 49176] gi|229790780|gb|EEP26894.1| hypothetical protein GCWU000182_00383 [Abiotrophia defectiva ATCC 49176] Length = 247 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/212 (36%), Positives = 110/212 (51%), Gaps = 5/212 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E+ IGYAF NR L A +HSS + S + ER+EFLGD +L L+ S LFN Sbjct: 19 IEQTIGYAFKNRKFLTNAFSHSSFVNEKHLSKSDCNERMEFLGDAVLELVTSEFLFNGHK 78 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EGEL+ LV + ARE+ L+ ++ + SI +D +E+LI Sbjct: 79 DMQEGELTKLRARLVCEPALAYSAREIGLSDYLLLGHGEAITGGRNRDSILSDAMEALIG 138 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG+ A F++K+ ++ K D+KT QE + T YK+ GPD Sbjct: 139 AIYLDGGLTNAKEFIEKHV-LNDIEHKKLFFDSKTIFQEMVQSDNMGTISYKLLAEYGPD 197 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 HD +F V I G +K+AAEQVAA Sbjct: 198 HDKKFKEAVYIGEKEYGVGEGHTKKAAEQVAA 229 >gi|295696065|ref|YP_003589303.1| ribonuclease III [Bacillus tusciae DSM 2912] gi|295411667|gb|ADG06159.1| ribonuclease III [Bacillus tusciae DSM 2912] Length = 231 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 115/225 (51%), Gaps = 6/225 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLL 59 A ++ LE R+G F N SLL +A THSS + ++ E ERLEFLGD +L LL+S L Sbjct: 2 ATKWDELEARLGITFRNASLLRQAFTHSSYRNEHRGDVEDNERLEFLGDAVLELLVSEFL 61 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F + EGEL+ ++V + + A L L +IR+ S+ ADV Sbjct: 62 FRAYPRFPEGELTRMRAAIVCEPSLVRFATALGLDQYIRLGRGEEMSGGRRRPSLLADVY 121 Query: 120 ESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTP-EYKV 177 E+LI A++LD G+E A F+ + + + D KT LQE K G+ P Y++ Sbjct: 122 EALIGAIFLDQGLEAAREFLQRMMFPALQREQAPILDDYKTMLQEHVQ-KVGLGPLTYRI 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 T GP H F V I G A +G SK+ AEQ AA E L + Sbjct: 181 TDERGPAHHREFVAQVWIGGQAYGEGSGRSKKEAEQHAAREALMK 225 >gi|325971140|ref|YP_004247331.1| ribonuclease 3 [Spirochaeta sp. Buddy] gi|324026378|gb|ADY13137.1| Ribonuclease 3 [Spirochaeta sp. Buddy] Length = 248 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 116/206 (56%), Gaps = 9/206 (4%) Query: 18 ANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 +N LL A TH S ++ +S ERLEFLGD +LG+ ++ LF +F + EG+ S Sbjct: 32 SNLELLNLAFTHRSFANETSDSVDNNERLEFLGDSVLGMCVADWLFRNFPAKAEGDFSKI 91 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 + +VS ++ + +AR+L + ++ + ++ AD +E+L AA YLD G E Sbjct: 92 KSVVVSEDSLAMIARQLSVDKYLLLGKGEEFTGGRDKKALLADCMEALFAACYLDSGFEA 151 Query: 135 AGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 A +FV Y +Q+ A+ + RD KT LQE+ ++ P Y + ++GP+HD F V Sbjct: 152 AKSFVMLYLEQQIQAVLDDDYHRDYKTSLQEYMQKRWRKVPSYTLVRKTGPEHDFTFFVE 211 Query: 193 VEISG--LAPAQGMDCSKRAAEQVAA 216 V+++G PA G +K+ AEQ+AA Sbjct: 212 VDVNGQVFGPASG--ANKKQAEQMAA 235 >gi|71274462|ref|ZP_00650750.1| Ribonuclease III [Xylella fastidiosa Dixon] gi|71901683|ref|ZP_00683759.1| Ribonuclease III [Xylella fastidiosa Ann-1] gi|170730564|ref|YP_001775997.1| ribonuclease III [Xylella fastidiosa M12] gi|238687923|sp|B0U3D8|RNC_XYLFM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71164194|gb|EAO13908.1| Ribonuclease III [Xylella fastidiosa Dixon] gi|71728553|gb|EAO30708.1| Ribonuclease III [Xylella fastidiosa Ann-1] gi|167965357|gb|ACA12367.1| Ribonuclease III [Xylella fastidiosa M12] Length = 227 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 116/225 (51%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + + S ++RIGY F + SLL +AL H S + E RLEFLGD ++ LLI+ LF Sbjct: 1 MISSKASDYQQRIGYVFTDPSLLLQALRHCSAGTPHNE---RLEFLGDSVVNLLIAEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + A EG L+ + LV + + +AR + L + + K SI AD VE Sbjct: 58 QRWPRADEGALTRARSELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD + T V +++ AL GK +D KT LQEW A+ P Y++ Sbjct: 118 AVIAAIYLDADLATCRTVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELI 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 F SG H F V + L +G S+R AEQ AA+ + + Sbjct: 178 FESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAASHAINQ 222 >gi|303252175|ref|ZP_07338343.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648958|gb|EFL79146.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 223 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 117/223 (52%), Gaps = 8/223 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF F Sbjct: 1 MQLERLQKKLSYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALFEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ L ++++ + K SI +D VE++I Sbjct: 58 PKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 AA+YLD G++ A V W Q L K G ++D KT LQE+ + P Y+V Sbjct: 118 AAIYLDAGMDKAIEQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDI 176 Query: 181 SGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 G H+ F V +I L G+ S+R AEQ AA +VL + Sbjct: 177 KGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAK 219 >gi|189485602|ref|YP_001956543.1| ribonuclease III [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287561|dbj|BAG14082.1| ribonuclease III [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 243 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 114/219 (52%), Gaps = 7/219 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYER-LEFLGDRILGLLISTLLFNHF 63 + +K I Y F + +L ALTH S + + E+Y R +EFLGD IL +++ L+ + Sbjct: 6 WEKFQKIIEYKFGDPKILATALTHKSYAAETVGENYNRRMEFLGDSILSAIVAETLYLRY 65 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS ++SA S ARE+DL I + S+ DV E++I Sbjct: 66 PRESEGKLSQFKAQIISAHNLSSWAREMDLGGCIYLGKSEDTKEARQRESLLCDVFEAVI 125 Query: 124 AALYLDGGIEVAGTFVDKYWK-QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLDGG E A FV ++ Q+ ++ D K+ LQE + + PEYKV SG Sbjct: 126 GAIYLDGGFENAKKFVLRFLNDQKEIEI----TDYKSRLQEILQSIYKELPEYKVIKESG 181 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 PDH+ +F V V I +G SK+ A+Q AA + +K Sbjct: 182 PDHNKKFEVAVYIKSELLGKGAGNSKKEAQQFAAKQAMK 220 >gi|304413540|ref|ZP_07395013.1| ribonuclease III [Candidatus Regiella insecticola LSR1] gi|304284383|gb|EFL92776.1| ribonuclease III [Candidatus Regiella insecticola LSR1] Length = 235 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 114/211 (54%), Gaps = 7/211 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE R+GYAF R+LL +ALTH S S ++ E RLEFLGD IL I+ L+ Sbjct: 1 MDPIIIKKLETRLGYAFKQRALLVQALTHRSASRTHNE---RLEFLGDAILNFFIAKALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV +T +++A E DL+ ++ + K+ S SI AD VE Sbjct: 58 QRFSDINEGDMSRMRATLVRGKTLAEIAHEFDLSDYLYLGKGELKNGKSPRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++++R + G+ ++D KT LQE+ + P Y VT Sbjct: 118 ALIGGIFLDSDIQTTERLLLTWYEKRLAEISPGEKQKDPKTRLQEYLQSHHLPLPSYLVT 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 G H+ +F ++ + P + + +K+ Sbjct: 178 QVHGEAHEQKF--IIHCKFIIPCRENNLTKQ 206 >gi|309389054|gb|ADO76934.1| RNAse III [Halanaerobium praevalens DSM 2228] Length = 237 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 111/220 (50%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 EK + F N+ LLE+ALTH S H + ERLEFLGD +L L IST +FN F Sbjct: 13 FEKSLDLNFNNKFLLERALTHKSYPNENRHLNLKDNERLEFLGDSVLSLSISTYIFNKFS 72 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ +VSA ++ A+ ++L ++ + SI AD +E++ Sbjct: 73 DFPEGDLAKMRAVIVSAPILAEAAKRINLGQYLFLGKGEEMTGGRERDSILADTMEAIFG 132 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD +V F+ + K + +G +D KT LQE PEY+V G Sbjct: 133 ALYLDQSFKVVSDFILELLKVDIINVAAGNHIQDYKTMLQEVIQDMGNFRPEYEVIDEEG 192 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 PDH+ F V V+++ + G SK+ AEQ AA L + Sbjct: 193 PDHNKTFIVAVKMNEESLGSGQGSSKKEAEQEAAKVALDK 232 >gi|227500106|ref|ZP_03930177.1| ribonuclease III [Anaerococcus tetradius ATCC 35098] gi|227217821|gb|EEI83118.1| ribonuclease III [Anaerococcus tetradius ATCC 35098] Length = 239 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 121/220 (55%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 E++IGY+F ++ L++ A THSS ++ + +S ERLEFLGD IL +++S +LF ++ Sbjct: 14 FEEKIGYSFNDKELIDVAFTHSSYTNEVKGKKKSNERLEFLGDSILDMIVSEILFKNYSQ 73 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG L+ + LV + ++ + ++S++ + ++ ++AD E++ AA Sbjct: 74 KPEGWLTKTRSRLVCTSSFAKACEKFQMSSYLNFGNGEKQGGGELKKHVKADTFEAVCAA 133 Query: 126 LYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLD E F+ +K AL D KT+LQE+ +AK +Y++T G Sbjct: 134 IYLDSSYENLFNFLVTNYKAEALHVINDDSIFNDYKTKLQEYHNAKDKKILKYELTKEEG 193 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P+H FT+ V++ A G+ +K+ AEQ+AA ++ Sbjct: 194 PEHSKTFTMAVKLGNKILAYGVGKNKKQAEQMAAKAAFEK 233 >gi|212636523|ref|YP_002313048.1| ribonuclease III [Shewanella piezotolerans WP3] gi|226735379|sp|B8CQJ5|RNC_SHEPW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|212558007|gb|ACJ30461.1| Ribonuclease III [Shewanella piezotolerans WP3] Length = 225 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/215 (37%), Positives = 117/215 (54%), Gaps = 5/215 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + +GY FA ++LL++ALTH S S+ + E RLEFLGD IL ++IS L++ F A E Sbjct: 10 LCRTLGYEFAEQALLDQALTHRSASNKHNE---RLEFLGDSILSIVISDALYHQFPKATE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV + +++A E L ++++ K SI AD VE++I A+YL Sbjct: 67 GDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELKSGGFRRESILADAVEAIIGAIYL 126 Query: 129 DGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 D IE V ++ R + ++D KT LQE P YKV G H+ Sbjct: 127 DSDIEKCRKLVLNWYASRLRVIEPINQKDPKTLLQEHLQKFRKPLPIYKVVHTEGDAHEQ 186 Query: 188 RFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 FTV + L A G+ S+R AEQ AAA+VL+ Sbjct: 187 TFTVECVVEDLRQAVVGVASSRRKAEQSAAAQVLE 221 >gi|294815350|ref|ZP_06773993.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064] gi|326443704|ref|ZP_08218438.1| ribonuclease III [Streptomyces clavuligerus ATCC 27064] gi|294327949|gb|EFG09592.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064] Length = 303 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 119/219 (54%), Gaps = 6/219 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 19 AASSHTLLEGRLGYRLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L +FIR+ SI AD + Sbjct: 78 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGAFIRLGRGEEGTGGRDKASILADTL 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS D KT LQE ++ PEY V Sbjct: 138 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTASEGLGVPEYLV 197 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T +GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 198 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 235 >gi|254392460|ref|ZP_05007640.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064] gi|197706127|gb|EDY51939.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064] Length = 300 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 119/219 (54%), Gaps = 6/219 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 16 AASSHTLLEGRLGYRLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L +FIR+ SI AD + Sbjct: 75 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGAFIRLGRGEEGTGGRDKASILADTL 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS D KT LQE ++ PEY V Sbjct: 135 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTASEGLGVPEYLV 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T +GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 232 >gi|139436972|ref|ZP_01771132.1| Hypothetical protein COLAER_00105 [Collinsella aerofaciens ATCC 25986] gi|133776619|gb|EBA40439.1| Hypothetical protein COLAER_00105 [Collinsella aerofaciens ATCC 25986] Length = 241 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 115/226 (50%), Gaps = 3/226 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 R + ++ +G+ F N+ LL ALTH S SYERLEFLGD ILG +++ LF Sbjct: 6 RLTRAQEILGHEFNNKVLLRAALTHPSAVEGQPVSASYERLEFLGDSILGAVVARSLFES 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+L+ SLVS T S+V+ EL + I + + S +V ESL Sbjct: 66 YPEFDEGKLTRLKVSLVSGATLSEVSHELGIDDIIIFGASETGTGARGLHSALENVYESL 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + ALYLD G +VA F+ + K A + + + K+ LQE A P YK+ Sbjct: 126 VGALYLDAGWDVAAEFIHRTLKPHLASERAEHPANPKSFLQECVQADGHEPPAYKLVGSE 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 GP H P FT VV I G+ +G SK+ AE AA E L R G T Sbjct: 186 GPAHAPTFTAVVLIDGIRQGRGTGSSKKEAEGAAALEALDRMGYTT 231 >gi|220904300|ref|YP_002479612.1| ribonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868599|gb|ACL48934.1| Ribonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 243 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/217 (36%), Positives = 116/217 (53%), Gaps = 12/217 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDS 65 ++K++G+ F + LLE ALTHSS ++ QE ER EFLGD +L L +S L+ F S Sbjct: 19 VKKQLGHGFIRKDLLELALTHSSWANECGPGQEHNERQEFLGDAVLELCVSWELYRRFPS 78 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EGEL+ +SLVSA + ++ AR++ L +++ ++ +D +E+++AA Sbjct: 79 AREGELTKMRSSLVSAVSLAERARDMGLDRLLKLGRGEESQGGRKRDAVLSDALEAVLAA 138 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +Y DGG E G W RA GK +D KT LQE + +FG P Y Sbjct: 139 IYEDGGFAAAQEAVGRIFADQWPSRA-GDGKASKDYKTRLQEASQQRFGQAPLYTRVGSH 197 Query: 182 GPDHDPRFTVVVEISGLA--PAQGMDCSKRAAEQVAA 216 GP+H F V + + + A G C K AEQ AA Sbjct: 198 GPEHSKVFEVALRLPDGSEFSASGSSCKK--AEQQAA 232 >gi|326316027|ref|YP_004233699.1| ribonuclease 3 [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372863|gb|ADX45132.1| Ribonuclease 3 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 228 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/216 (35%), Positives = 112/216 (51%), Gaps = 6/216 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + S L+ R+ +AF++ SLL++A+TH S S + E RLEFLGD +L L +S+LL+ Sbjct: 1 MVSPSLSALQDRLQHAFSDPSLLQRAITHRSFSADHNE---RLEFLGDSVLSLAVSSLLY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+LS +LV E +A L L +R+ K SI AD +E Sbjct: 58 QRLRDLPEGDLSRVRANLVRQEALHDLALGLQLPQVLRLGEGETKSGGKQRPSILADALE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD G + A V + +K + + +DAKT LQEW + P+Y+V Sbjct: 118 ALIGAVYLDAGYQCAEALVHRLYKDVEINPRMQAAEKDAKTALQEWLQGRKMKLPQYRVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 G H F V +I L + G+ S+RA EQ Sbjct: 178 ATVGAAHRQTFDVECDIPELGLTERGIGGSRRAGEQ 213 >gi|325108661|ref|YP_004269729.1| RNAse III [Planctomyces brasiliensis DSM 5305] gi|324968929|gb|ADY59707.1| RNAse III [Planctomyces brasiliensis DSM 5305] Length = 335 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/216 (35%), Positives = 121/216 (56%), Gaps = 9/216 (4%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E+ +GY F +++ L K+LTH+SI+ + +S ER+EFLGD +LG ++ LF F +EG Sbjct: 19 EQALGYQFQDKNWLLKSLTHASIAQTRLQSNERMEFLGDAVLGAVVCDRLFALFPEDEEG 78 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +++ + +VS C+Q+A L L F+++ L + S+ A V ES+IAA+YLD Sbjct: 79 QMTQMKSEVVSRTACAQLALALGLDRFVQMGKGLHQSR-EIPLSVLAGVFESVIAAIYLD 137 Query: 130 GGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 GG + A F+ + Q A ++ R++K++LQ+ TP Y++ SGPDH Sbjct: 138 GGYKAAFDFISGKLEDLIQHAAETAHI-RNSKSQLQQLTQRTRSQTPTYELLQESGPDHS 196 Query: 187 PRFTV--VVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F V +V PA G +K+ AEQ AA L Sbjct: 197 KCFLVQAIVGPDTYPPAWG--SNKKEAEQKAALNAL 230 >gi|325265084|ref|ZP_08131811.1| ribonuclease III [Clostridium sp. D5] gi|324029774|gb|EGB91062.1| ribonuclease III [Clostridium sp. D5] Length = 232 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/212 (37%), Positives = 114/212 (53%), Gaps = 5/212 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH-SYQESY---ERLEFLGDRILGLLISTLLFNHFD 64 LEK+IGY F + SLL +A+ HSS ++ + E Y ERLEFLGD +L L+ S LF Sbjct: 11 LEKKIGYKFRDFSLLRRAMMHSSFTNEKHLEKYHCNERLEFLGDAVLELVSSEYLFLESP 70 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ S+V + + AR++DL S++ + SI +D +E+LI Sbjct: 71 KVSEGELTKTRASMVCEPSLAFCARDIDLGSYLLLGRGEEATGGRARDSITSDALEALIG 130 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG A F+ ++ L+ K D+KT LQE A+ + Y++ GPD Sbjct: 131 AIYLDGGFTNAKEFIHRFI-LTDLEDKKLFFDSKTILQEIVQARMAGSISYRLIKEEGPD 189 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 H+ F V V I G +K+AAEQ AA Sbjct: 190 HNKAFFVEVMIEENGYGIGKGRTKKAAEQEAA 221 >gi|32129971|sp|Q9PB98|RNC_XYLFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 227 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 116/225 (51%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + + S ++RIGY F + SLL +AL H S + E RLEFLGD ++ LLI+ LF Sbjct: 1 MISSKASDYQQRIGYVFTDPSLLLQALRHCSAGTPHNE---RLEFLGDSVVNLLIAEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + A EG L+ + LV + + +AR + L + + K SI AD VE Sbjct: 58 QRWPRADEGALTRARSELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD + T V +++ AL GK +D KT LQEW A+ P Y++ Sbjct: 118 AVIAAIYLDADLATCRTVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELI 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 F SG H F V + L +G S+R AEQ AA+ + + Sbjct: 178 FESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAASHAIDQ 222 >gi|189425004|ref|YP_001952181.1| ribonuclease III [Geobacter lovleyi SZ] gi|189421263|gb|ACD95661.1| Ribonuclease III [Geobacter lovleyi SZ] Length = 228 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 118/217 (54%), Gaps = 7/217 (3%) Query: 13 IGYAFANRSLLEKALTHSS-ISHSYQES---YERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G++F N+ LL++ALTH S ++ + QE Y+RLEFLGD +LG L++ LL HF + E Sbjct: 9 LGHSFINQRLLQQALTHPSYLNEARQEGAADYQRLEFLGDAVLGFLLADLLCQHFPALPE 68 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +SLV +++A + + I + ++ SI ADV E+L+ A++ Sbjct: 69 GDLSRLRSSLVDQPRLARLAVDAGIPPLILMGKGAEREGGRTNPSILADVFEALLGAIHC 128 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D G V + A+ +G DAK+ELQE A+ P Y + + GPDH Sbjct: 129 DAGFAAVQQVVKHIYAPLVNAIAAGTPAHHDAKSELQELLAARKQAAPVYNLVDQQGPDH 188 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 D F + V + G+ QG SK+AA+Q AA L R Sbjct: 189 DRLFCIEVSVDGMPLGQGQGRSKKAAQQSAAESALAR 225 >gi|325577735|ref|ZP_08148010.1| ribonuclease III [Haemophilus parainfluenzae ATCC 33392] gi|325160480|gb|EGC72606.1| ribonuclease III [Haemophilus parainfluenzae ATCC 33392] Length = 227 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 115/221 (52%), Gaps = 13/221 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++IGY F++ L+ ALTH S S + E RLEFLGD IL +I+ L++ F E Sbjct: 7 LERKIGYQFSDLKNLKLALTHRSASTQHNE---RLEFLGDSILNYVIADALYHQFPRCNE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +LV T + +AR +L ++ + S K SI AD VE++I A+ L Sbjct: 64 GELSRMRATLVREPTLAMLARNFELGDYMSLGSGELKSGGFRRESILADCVEAVIGAMAL 123 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D + A V ++K +K G ++DAKT LQE+ K P Y+V G H Sbjct: 124 DSSFDKAADIVRSWYKTLLAEIKPGDNQKDAKTRLQEYLQGKHFALPTYEVIKIEGEAHC 183 Query: 187 PRFTVVVEISGLAP------AQGMDCSKRAAEQVAAAEVLK 221 FTV + + A+G S+R AEQ AA ++LK Sbjct: 184 QTFTVECTVKNVPNIDRTFIAKG--SSRRKAEQAAAEQILK 222 >gi|238753924|ref|ZP_04615284.1| Ribonuclease 3 [Yersinia ruckeri ATCC 29473] gi|238707912|gb|EEQ00270.1| Ribonuclease 3 [Yersinia ruckeri ATCC 29473] Length = 226 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 122/225 (54%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVITRLQRKLGYTFQQQELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD GI+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSGIQTVERLILDWYRSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL P G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGLGEPVVGTGSSRRKAEQAAAEQALKQ 222 >gi|301154741|emb|CBW14204.1| RNase III [Haemophilus parainfluenzae T3T1] Length = 227 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 115/221 (52%), Gaps = 13/221 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++IGY F++ L+ ALTH S S + E RLEFLGD IL +I+ L++ F E Sbjct: 7 LERKIGYQFSDLKNLKLALTHRSASTQHNE---RLEFLGDSILNYVIADALYHQFPRCNE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +LV T + +AR +L ++ + S K SI AD VE++I A+ L Sbjct: 64 GELSRMRATLVREPTLAIIARNFELGDYMSLGSGELKSGGFRRESILADCVEAVIGAMAL 123 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D + A V ++K +K G ++DAKT LQE+ K P Y+V G H Sbjct: 124 DSSFDKAADIVRSWYKTLLAEIKPGDNQKDAKTRLQEYLQGKHFALPTYEVIKIEGEAHC 183 Query: 187 PRFTVVVEISGLAP------AQGMDCSKRAAEQVAAAEVLK 221 FTV + + A+G S+R AEQ AA ++LK Sbjct: 184 QTFTVECTVKNVPNIDRTFIAKG--SSRRKAEQAAAEQILK 222 >gi|213419257|ref|ZP_03352323.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 213 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 5/197 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 20 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 77 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ + P Y V Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196 Query: 179 FRSGPDHDPRFTVVVEI 195 G HD FT+ ++ Sbjct: 197 QVRGEAHDQEFTIHCQV 213 >gi|28199176|ref|NP_779490.1| ribonuclease III [Xylella fastidiosa Temecula1] gi|182681907|ref|YP_001830067.1| ribonuclease III [Xylella fastidiosa M23] gi|32129967|sp|Q87C06|RNC_XYLFT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238691044|sp|B2I604|RNC_XYLF2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28057282|gb|AAO29139.1| ribonuclease III [Xylella fastidiosa Temecula1] gi|182632017|gb|ACB92793.1| Ribonuclease III [Xylella fastidiosa M23] gi|307578162|gb|ADN62131.1| ribonuclease III [Xylella fastidiosa subsp. fastidiosa GB514] Length = 227 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 116/225 (51%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + + S ++RIGY F + SLL +AL H S + E RLEFLGD ++ LLI+ LF Sbjct: 1 MISSKASDYQQRIGYVFTDPSLLLQALRHRSAGTPHNE---RLEFLGDSVVNLLIAEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + A EG L+ + LV + + +AR + L + + K SI AD VE Sbjct: 58 QRWPRADEGALTRARSELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD + T V +++ AL GK +D KT LQEW A+ P Y++ Sbjct: 118 AVIAAIYLDADLATCRTVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELI 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 F SG H F V + L +G S+R AEQ AA+ + + Sbjct: 178 FESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAASHAIDQ 222 >gi|126667175|ref|ZP_01738149.1| ribonuclease III [Marinobacter sp. ELB17] gi|126628331|gb|EAZ98954.1| ribonuclease III [Marinobacter sp. ELB17] Length = 229 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++RIGY F ++ L ALTH S + ++ ERLEFLGD I+ ++I+ LF F A+E Sbjct: 10 LQRRIGYQFKSQERLLLALTHRSFGN---QNNERLEFLGDSIVNMVIAEHLFRRFPKARE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +V T +++ RE DL S++R+ S K SI AD VES+I A+YL Sbjct: 67 GQLSRLRARMVKGVTLAEIGREFDLGSYLRLGSGELKSGGFRRESILADAVESVIGAIYL 126 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D + +++ R L ++D KT LQE+ ++ P Y V G H+ Sbjct: 127 DSDFVTCQAQILRWFDLRLQNLDLQDTQKDPKTRLQEYLQSRQFPLPIYDVLSVDGEAHN 186 Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225 F + +S L G S+R AEQ AA LK G+ Sbjct: 187 QTFHISCALSSLGRKTTGSGNSRRIAEQQAARNALKELGV 226 >gi|239991059|ref|ZP_04711723.1| ribonuclease III [Streptomyces roseosporus NRRL 11379] gi|291448061|ref|ZP_06587451.1| ribonuclease III [Streptomyces roseosporus NRRL 15998] gi|291351008|gb|EFE77912.1| ribonuclease III [Streptomyces roseosporus NRRL 15998] Length = 274 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 6/219 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 16 TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SFIR+ SI AD + Sbjct: 75 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G+ A V + + +S D KT LQE ++ PEY V Sbjct: 135 EAVIGAVYLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T +GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 232 >gi|182435701|ref|YP_001823420.1| ribonuclease III [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464217|dbj|BAG18737.1| putative ribonuclease III [Streptomyces griseus subsp. griseus NBRC 13350] Length = 274 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 6/219 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 16 TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SFIR+ SI AD + Sbjct: 75 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G+ A V + + +S D KT LQE ++ PEY V Sbjct: 135 EAVIGAVYLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T +GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 232 >gi|326776326|ref|ZP_08235591.1| ribonuclease III [Streptomyces cf. griseus XylebKG-1] gi|326656659|gb|EGE41505.1| ribonuclease III [Streptomyces cf. griseus XylebKG-1] Length = 274 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 6/219 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 16 TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SFIR+ SI AD + Sbjct: 75 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G+ A V + + +S D KT LQE ++ PEY V Sbjct: 135 EAVIGAVYLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T +GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 232 >gi|90021888|ref|YP_527715.1| RNAse III [Saccharophagus degradans 2-40] gi|89951488|gb|ABD81503.1| RNAse III [Saccharophagus degradans 2-40] Length = 226 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/215 (36%), Positives = 118/215 (54%), Gaps = 10/215 (4%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 R+GY F ++SLL+ AL+H S +++ ER+EFLGD +L +I+ LF F +AKEG+L Sbjct: 10 RLGYTFKDKSLLKLALSHRSYG---KQNNERVEFLGDSLLNFIIAEALFAKFPTAKEGQL 66 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + +LV ET +++ARE L F+ + K SI AD VE+LI A+YLD Sbjct: 67 TQLRANLVKGETLAEIAREFGLGDFLLLGEGELKSGGFRRASILADAVEALIGAIYLDSN 126 Query: 132 IEVAGTFVDKY--WKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + T ++ W L + + +DAKT LQE+ + P Y V G H Sbjct: 127 SSMP-TCRERVLAWYATRLDKVELKATAKDAKTLLQEYLQERKMPLPTYTVLAEGGEAHS 185 Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVL 220 +FTV I+G + P + SKR AE++AA ++L Sbjct: 186 RQFTVECTITGKSKPCSAVGNSKRIAEKLAAEKML 220 >gi|291533418|emb|CBL06531.1| RNAse III [Megamonas hypermegale ART12/1] Length = 240 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 119/220 (54%), Gaps = 8/220 (3%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHFDSAKE 68 R+G F + +LL +ALTH+S ++ ++ ERLEFLGD +L L ST LF F E Sbjct: 17 RLGVKFNDLNLLNQALTHTSYANEAKDHSLHNERLEFLGDAVLELASSTYLFKTFTQMPE 76 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GE++ S+V + +++A L++ ++ + R SI AD ES+I A+YL Sbjct: 77 GEMTKARASVVCETSLAKLAMNLNVGQYLLLGKGERLTGGEHRPSILADAFESIIGAIYL 136 Query: 129 DGGIEVAGTFV-DKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G + A +V DK ++ A+K G +D KT LQE AK G EYK+ +GPDH Sbjct: 137 DQGWQTAYEYVLDKLNEEFIAVKYGYNLKDYKTILQEVVQAK-GQHVEYKLLAETGPDHA 195 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 F V + +G +K+ AEQ AA E LK+ IW Sbjct: 196 KTFEFAVVVDKKIDGKGKGTTKKEAEQHAAYEALKK--IW 233 >gi|239944597|ref|ZP_04696534.1| ribonuclease III [Streptomyces roseosporus NRRL 15998] Length = 271 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 6/219 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 13 TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 71 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SFIR+ SI AD + Sbjct: 72 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 131 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G+ A V + + +S D KT LQE ++ PEY V Sbjct: 132 EAVIGAVYLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 191 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T +GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 192 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 229 >gi|313683639|ref|YP_004061377.1| RNAase iii [Sulfuricurvum kujiense DSM 16994] gi|313156499|gb|ADR35177.1| RNAse III [Sulfuricurvum kujiense DSM 16994] Length = 226 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 108/201 (53%), Gaps = 10/201 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++R+GY F N+ LL +ALTH S Y ERLEFLGD +L L++ L+ F E Sbjct: 7 LQERLGYTFQNKELLIEALTHKSYKQPYNN--ERLEFLGDAVLDLIVGEYLYKKFRGYDE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS SLV+ + +A L+L I +S+ + +S+ ++ E+++ A+YL Sbjct: 65 GKLSKMRASLVNEGGFTSLANHLNLGEHIFLSNAEENNSGRTKSSLLSNAFEAVMGAMYL 124 Query: 129 DGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G+ E+ + ++ +L S +D KT LQE A +G TPEY++ GPD Sbjct: 125 ETGLGKVQEITVSLLEHVHPDISLDS--LFKDYKTSLQELTQAHYGTTPEYQLIAAHGPD 182 Query: 185 HDPRFTVVVEISG--LAPAQG 203 H F V V I G A AQG Sbjct: 183 HKKEFEVAVIIDGKRYASAQG 203 >gi|254360744|ref|ZP_04976892.1| ribonuclease III [Mannheimia haemolytica PHL213] gi|153091314|gb|EDN73288.1| ribonuclease III [Mannheimia haemolytica PHL213] Length = 224 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 118/220 (53%), Gaps = 6/220 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY F N L +ALTH S + ++ ERLEFLGD IL I +L++ F Sbjct: 1 MQLERLQKKLGYQFHNLDYLIQALTHRSAA---TKNNERLEFLGDSILNFTIGKVLYDKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ DL ++++ K SI +D VE++I Sbjct: 58 PKANEGELSRMRATLVREQTLAIIARKFDLGDYLKLGPGELKSGGFRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD + A V+ ++ + + G ++D KT LQE+ + PEY V Sbjct: 118 AAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEFLQGRKLPLPEYDVLDIK 177 Query: 182 GPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220 G H+ F V ++ + G+ S+R AEQ AA + L Sbjct: 178 GEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAAEKAL 217 >gi|227484649|ref|ZP_03914965.1| ribonuclease III [Anaerococcus lactolyticus ATCC 51172] gi|227237369|gb|EEI87384.1| ribonuclease III [Anaerococcus lactolyticus ATCC 51172] Length = 237 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 9/224 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 EK IGY F +++L++ A THSS ++ + +S ERLEFLGD IL +++S LF ++ Sbjct: 14 FEKSIGYTFNDKTLIDVAFTHSSFTNEARIKTKSNERLEFLGDTILDMVVSEYLFKNYKE 73 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG L+ + +V ++ ++ + DL ++R +K ++AD E+ AA Sbjct: 74 KPEGWLTRTRSRIVCTDSFAKACEKFDLTKYLRFGMGEKKQGGKLKKHVKADTFEAFCAA 133 Query: 126 LYLDGGIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLD + F+ + + L+ D KT LQE+ +A Y++ G Sbjct: 134 IYLDSSYQRLFEFLKSNYSEEVLQIINDDSLFLDYKTRLQEYYNAHSKKNLSYELIKEVG 193 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223 P+HD FT+ V + A AQG +K+ AEQ+AA E++K + Sbjct: 194 PEHDKTFTMEVRLGNRALAQGEGKNKKTAEQMAAKAAYEIIKND 237 >gi|160947505|ref|ZP_02094672.1| hypothetical protein PEPMIC_01439 [Parvimonas micra ATCC 33270] gi|158446639|gb|EDP23634.1| hypothetical protein PEPMIC_01439 [Parvimonas micra ATCC 33270] Length = 237 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 110/222 (49%), Gaps = 14/222 (6%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 +GY F + LL A H S + ++ S ERLEFLGD ILG ++S L+ F ++ EG Sbjct: 17 LGYKFKDLELLNLAFVHRSYLNECKDATISNERLEFLGDVILGFIVSVELYEQFPNSDEG 76 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF----MTSIQADVVESLIAA 125 L+ + +V E+ S AR +L ++ L K SF SI AD E+L A Sbjct: 77 YLTKIRSKVVCEESFSYAARTFNLGKYLL----LGKGEDSFGGRNRNSILADTFEALFGA 132 Query: 126 LYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 LYLDGG++V +KY+ + F +D K+ LQE+ H Y + G Sbjct: 133 LYLDGGMDVVTEIANKYFFDTVVYKIDKNIFIKDYKSYLQEYFHKNATTKISYTLVAERG 192 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDHD F + V I + G +K+ AEQ AA + L + G Sbjct: 193 PDHDKEFDMCVNIDDVVKGYGTGKNKKQAEQQAARDALIKSG 234 >gi|320547232|ref|ZP_08041525.1| ribonuclease III [Streptococcus equinus ATCC 9812] gi|320448120|gb|EFW88870.1| ribonuclease III [Streptococcus equinus ATCC 9812] Length = 228 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 118/226 (52%), Gaps = 8/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M AL + L++ G F + +LL+ A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MQALD-TKLQRDFGITFKDTTLLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+LS + +V E+ + +R FI++ + K +I Sbjct: 60 QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDDFIKLGNGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL +D G+E F+++ + K G F R D KT LQE VT + Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEK-GNFERVKDYKTTLQELLQGHGDVTID 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y+V+ SGP H F V V ++ A +QG+ SK+ AEQ AA L Sbjct: 179 YRVSNESGPAHAKVFEVTVYVNDEAKSQGIGKSKKLAEQDAAKNAL 224 >gi|227112907|ref|ZP_03826563.1| ribonuclease III [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|253689440|ref|YP_003018630.1| ribonuclease III [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259491904|sp|C6DC00|RNC_PECCP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|251756018|gb|ACT14094.1| ribonuclease III [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 226 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 120/225 (53%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQRKLGYTFQQYELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SG + + G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRKAEQAAAEQALKK 222 >gi|227328581|ref|ZP_03832605.1| ribonuclease III [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 226 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 120/225 (53%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQRKLGYTFQQYDLLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SG + + G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRKAEQAAAEQALKK 222 >gi|269123548|ref|YP_003306125.1| ribonuclease III [Streptobacillus moniliformis DSM 12112] gi|268314874|gb|ACZ01248.1| ribonuclease III [Streptobacillus moniliformis DSM 12112] Length = 233 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L +I Y F N+ LL +ALTHSS + + + ERLEFLGD ++ L+ + Sbjct: 1 MKKMDLEKLMSKINYTFKNKKLLLEALTHSSYVNEHNFPNIKDNERLEFLGDSVMDLITT 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ + + EGELS + ++S S ++R+L+L ++I +S+ S+ Sbjct: 61 EYIYKNNLKSNEGELSKIKSQIISETVFSTISRDLNLGNYIFLSNGENMSGGRERNSVLG 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174 DV E+++ A+YLD V K + + K D K+ LQE K+ VTP Sbjct: 121 DVFEAMVGAIYLDSDYATTRDVVLKLLESKINNLDKIEWVSDYKSALQEITQLKYKVTPI 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y V GPDHD F + V + +G+ SK+ AE++AA + +++ Sbjct: 181 YTVLSEIGPDHDKTFEIEVRVEERLYGKGVAKSKKMAEKIAAKQAIEK 228 >gi|329936742|ref|ZP_08286449.1| ribonuclease III [Streptomyces griseoaurantiacus M045] gi|329303972|gb|EGG47855.1| ribonuclease III [Streptomyces griseoaurantiacus M045] Length = 273 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 117/219 (53%), Gaps = 6/219 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 23 AASSHTLLEGRLGYRLET-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 81 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SF+R+ SI AD + Sbjct: 82 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFVRLGRGEEGTGGRDKASILADTL 141 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS D KT LQE + PEY V Sbjct: 142 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLV 201 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + +GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 202 S-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 239 >gi|325915827|ref|ZP_08178126.1| RNAse III [Xanthomonas vesicatoria ATCC 35937] gi|325537948|gb|EGD09645.1| RNAse III [Xanthomonas vesicatoria ATCC 35937] Length = 226 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/211 (37%), Positives = 110/211 (52%), Gaps = 6/211 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ LL +AL H S + E RLEFLGD I+ LLI+ L+ + A EG L+ Sbjct: 12 IGHAFADPGLLARALRHRSAGTPHNE---RLEFLGDGIVNLLIAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEPSLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188 Query: 191 VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220 V + +A A+G S+R AEQ AAA V+ Sbjct: 189 VACILEQPIARAEGQGTSRRLAEQQAAATVI 219 >gi|77919004|ref|YP_356819.1| RNase III [Pelobacter carbinolicus DSM 2380] gi|90101632|sp|Q3A4Q8|RNC_PELCD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|77545087|gb|ABA88649.1| RNAse III [Pelobacter carbinolicus DSM 2380] Length = 232 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 12/222 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LE I Y F N++LL +ALTH S S+ + ERLEFLGD +LG+++S +F F Sbjct: 10 LEDTIDYVFDNQALLLEALTHKSFSNEQNDRTEPDNERLEFLGDAVLGVVVSHYIFRTFP 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ + +VS + + + + + L ++R+ + +S+ A+ +E+L+ Sbjct: 70 HLPEGELTRIRSEVVSEKGLTVIGKAICLGDYMRLGKGEERSGGRQKSSLLANTMEALLG 129 Query: 125 ALYLDGGIE-----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 A++ DGG + + F+ + K+G D KT LQE A+FG P+Y + Sbjct: 130 AVFCDGGFDSVRRVIEALFIPHIQRAARRKTGV---DYKTRLQERLQARFGDVPQYVLIH 186 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H ++V G QG SK++AEQ AA + L+ Sbjct: 187 ADGPPHQRSYSVEAHFRGSCIGQGQGRSKKSAEQAAAKQALE 228 >gi|320008314|gb|ADW03164.1| ribonuclease III [Streptomyces flavogriseus ATCC 33331] Length = 274 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 6/219 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 16 TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SFIR+ SI AD + Sbjct: 75 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G+ A V + + +S D KT LQE ++ PEY V Sbjct: 135 EAVIGAVYLDQGLGAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T +GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 232 >gi|154173754|ref|YP_001409228.1| ribonuclease III [Campylobacter curvus 525.92] gi|189043298|sp|A7H186|RNC_CAMC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|112803490|gb|EAU00834.1| ribonuclease III [Campylobacter curvus 525.92] Length = 223 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 8/219 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+K +GY F N LL +ALTH S Y S ERLEFLGD ++ L++ LF F Sbjct: 6 NLQKLLGYEFENTKLLNEALTHKSTKLPY--SNERLEFLGDAVMDLIVGEYLFKKFSKTN 63 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG++S +LV+ ++ + +AR L + FI +S+ + S+ +D E+++ A+Y Sbjct: 64 EGDMSKLRAALVNEKSFANMARHLQIGEFIHLSTAEANNGGREKASLLSDAFEAVMGAVY 123 Query: 128 LDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 L+ G+ E+A ++ + + + +D KT LQE A G TP Y++ GP Sbjct: 124 LEAGLDKVREIAVRLLEICYPK--IDFSHLVKDYKTALQEITQASLGTTPIYELVRSFGP 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 DH F + + ++ ++ + SK+ A+Q+AA L++ Sbjct: 182 DHKKEFEIALLLNDKEISRAIANSKKEAQQMAAKIALEK 220 >gi|160880576|ref|YP_001559544.1| ribonuclease III [Clostridium phytofermentans ISDg] gi|160429242|gb|ABX42805.1| Ribonuclease III [Clostridium phytofermentans ISDg] Length = 235 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 114/211 (54%), Gaps = 5/211 (2%) Query: 10 EKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFDS 65 E++I YAF LL +ALTHSS ++ S + ERLEFLGD +L L S LF Sbjct: 14 EQKIDYAFTEPGLLRQALTHSSFANEKRLSKLANNERLEFLGDAVLELTTSEWLFEKHPK 73 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ S+V +T + AREL L +++ + SI +D +ES+I A Sbjct: 74 MPEGDLTKLRASMVCEQTLALCARELHLGNYVFLGKGEDTTGGRDRDSILSDALESIIGA 133 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +YLDGG A F+ Y ++ K D+KT LQE +++ Y++ +GPDH Sbjct: 134 IYLDGGFANAKEFISNYILSD-IEHKKLFYDSKTILQEIVQSEYKKHLSYELLQETGPDH 192 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + +FTVV ++ + G +K+AAEQ AA Sbjct: 193 NKKFTVVAKMDEESLEIGTGRTKKAAEQEAA 223 >gi|291563451|emb|CBL42267.1| RNAse III [butyrate-producing bacterium SS3/4] Length = 226 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 74/216 (34%), Positives = 116/216 (53%), Gaps = 5/216 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + L++ IGY F + LL ALTHSS ++ ERLEFLGD +L ++ S LF Sbjct: 4 KLEKLQEMIGYQFKDPGLLTHALTHSSYANEKHWDKTRCNERLEFLGDAVLEVISSDFLF 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++S EGE++ SLV T + A + L ++ + S+ +D +E Sbjct: 64 HTYESMPEGEMTKLRASLVCEPTLAYCADVIPLGDYLLLGKGEDLTGGRKRPSVVSDAME 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++I A+YLDGG+ A F+ ++ ++ + D+KT LQE AK+ T Y++ Sbjct: 124 AVIGAIYLDGGLANAKEFIHRFI-LNDIEHKQLFYDSKTILQEMVQAKYKETLVYELLKE 182 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH+ F V V+I +G+ +K+AAEQVAA Sbjct: 183 EGPDHNKSFEVCVKIGDEEIGRGLGRTKKAAEQVAA 218 >gi|261855986|ref|YP_003263269.1| ribonuclease III [Halothiobacillus neapolitanus c2] gi|261836455|gb|ACX96222.1| ribonuclease III [Halothiobacillus neapolitanus c2] Length = 243 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 117/227 (51%), Gaps = 14/227 (6%) Query: 1 MSALRYST--------LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG 52 MSAL+ S+ L + IG FA+ LLE AL H S + + ERLEFLGD +L Sbjct: 1 MSALKPSSPFVTAPEKLAQHIGITFASPELLEMALRHRSAGNM---NNERLEFLGDAVLN 57 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L+I+ L+ A EGELS SLV E+ + +ARELDL S++ + K Sbjct: 58 LVIANQLYTMHSKATEGELSRWRASLVREESLAVIARELDLGSYLVLGPGELKSGGFRRD 117 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFG 170 SI AD +E+ I A+YLD G +VA + + + +++ + L +D KT LQEW Sbjct: 118 SILADALEATIGAVYLDQGFDVAQSLLVRLFERMLQDLPDAASLKDPKTRLQEWLQGSKR 177 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAA 216 P Y+VT G H F V +S A G S+R AEQ AA Sbjct: 178 ELPSYEVTTIRGQAHKQVFEVTCTLSDTQQTAVGRGSSRRKAEQAAA 224 >gi|150021479|ref|YP_001306833.1| ribonuclease III [Thermosipho melanesiensis BI429] gi|149794000|gb|ABR31448.1| Ribonuclease III [Thermosipho melanesiensis BI429] Length = 231 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 126/231 (54%), Gaps = 13/231 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLL 59 M R +E IGY F N+ LL ALTH+S ++ + ++SYERLEFLGD ++ +L+ T+L Sbjct: 1 MERFREGEIEHVIGYRFRNKELLFTALTHTSYANENKKQSYERLEFLGDSVIDILVCTIL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EG ++ +++ S + ++A++ +L +I + R+ S SI ADVV Sbjct: 61 YEQYQTLNEGTMAQIKSAVTSEDILFEIAKKFNLGKYILLGKGERRSRGSEKKSILADVV 120 Query: 120 ESLIAALYLDG--GIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 ESLIAA+YLD +++ K +K +GK D KT+LQE KF P Y Sbjct: 121 ESLIAAIYLDSNKNLKLIENLFSKIFKDYIDIFLTGKRIFDYKTKLQELTQDKFKQLPVY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223 + T G +F ++I+ ++ SK+ AE++AA E LK E Sbjct: 181 ETTTVGG-----KFITTLKINNKIYSKAKGSSKKDAEKLAAKIAYEKLKEE 226 >gi|157737847|ref|YP_001490531.1| ribonuclease III [Arcobacter butzleri RM4018] gi|315637636|ref|ZP_07892842.1| ribonuclease III [Arcobacter butzleri JV22] gi|189043289|sp|A8EV88|RNC_ARCB4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157699701|gb|ABV67861.1| ribonuclease III [Arcobacter butzleri RM4018] gi|315478090|gb|EFU68817.1| ribonuclease III [Arcobacter butzleri JV22] Length = 224 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 4/206 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS LEK + Y F N++L+ +ALTH S Y ERLEFLGD +L L++ L+ F Sbjct: 4 YSKLEKCLDYQFKNKNLIIEALTHKSFKKPYNN--ERLEFLGDAVLNLIVGEYLYLKFPK 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 + EGELS SLV+ +++A E+ L +I +S+ ++ SI +D E+++ A Sbjct: 62 SNEGELSKIRASLVNETGFTRLANEIKLGEYIFISTAEERNKGRTKASILSDAFEAIMGA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + ++ + D KT LQE A+F PEYK+ GP Sbjct: 122 IYLESGLNTLKPIILRILEESYDKINLDVLFSDYKTALQEITQARFASIPEYKIEGSYGP 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 DH F V + I G + SK+ Sbjct: 182 DHKKEFEVSIWIDGKNYGKASGKSKK 207 >gi|46445908|ref|YP_007273.1| putative ribonuclease III [Candidatus Protochlamydia amoebophila UWE25] gi|81627660|sp|Q6MEK1|RNC_PARUW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|46399549|emb|CAF22998.1| putative Ribonuclease III [Candidatus Protochlamydia amoebophila UWE25] Length = 242 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 115/220 (52%), Gaps = 4/220 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63 +E ++GY F + LL A H S + +E ERLEFLGD +LG+LIS L+ Sbjct: 19 PAIEAKLGYTFKDPQLLVLAFVHRSFINENREVNQHNERLEFLGDSVLGMLISDYLYCKL 78 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS + LV A +C + LDL+ ++ + R + SI AD+ E++I Sbjct: 79 PKTPEGQLSYLRSRLVEASSCVHYIQSLDLSGYLLLGKGERMNDGRGRESILADLFEAII 138 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLDGG++ A F+ K + Q + R+ K LQ++ + TP Y+V SG Sbjct: 139 GAIYLDGGLQAAKDFLFKNFHQHIEIILATPLRNWKALLQDYCQKNYQQTPLYQVLHESG 198 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 PDH F + V I +G SK+ A+Q AAA+ L R Sbjct: 199 PDHSKVFQISVWIQDRELGRGKGTSKKEAQQAAAADALSR 238 >gi|195952887|ref|YP_002121177.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1] gi|226741373|sp|B4U7T8|RNC_HYDS0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|195932499|gb|ACG57199.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1] Length = 232 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 118/221 (53%), Gaps = 7/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + LE++IGY F +++L++KA TH S S S E+YE LEFLGD ++ + +L F + Sbjct: 4 FELLEEKIGYRFKDKNLVKKAFTHISFSKS-SENYEVLEFLGDALVNFMTVNILVEAFPN 62 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 KEGELS + L+S E + +A+ L+ +I +S + SI DV E+ AA Sbjct: 63 KKEGELSQLKSFLISEEFLASLAKSLNFEKYILISKGEELKGSNKNPSILCDVFEAFWAA 122 Query: 126 LYLDGGIE--VAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +Y+D G + + + + ++K + L+ S ++D KT LQE K+ P Y V Sbjct: 123 IYIDSGYDCKLTKSLFEHHFKSQILEMVNSNSLKQDYKTALQEITQKKWKERPIYNVISV 182 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP+H FTV L G SK+ AEQ AA +L+ Sbjct: 183 EGPEHRKTFTVECLFKDLRTT-GKGNSKKYAEQEAAKNMLQ 222 >gi|118444155|ref|YP_878292.1| ribonuclease III [Clostridium novyi NT] gi|118134611|gb|ABK61655.1| ribonuclease III [Clostridium novyi NT] Length = 237 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 118/220 (53%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + +E ++ F + ++L+ ALTHSS + + S ERLEFLGD IL L IS LL+N ++ Sbjct: 10 NEVENKLKVKFNDINILDTALTHSSFINENKNINSNERLEFLGDSILQLCISELLYNKYN 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +V + +VA++ ++ +I +S SI +D VE++IA Sbjct: 70 DEPEGFLTKKRALIVCGNSLHEVAKKWNIGKYINMSKGEEMTGGRTRISILSDCVEAIIA 129 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFG-VTPEYKVTFRS 181 ++YLD G EVA F+ + + + K S + D KT+LQE KFG EY + Sbjct: 130 SIYLDQGYEVAKNFIIENFNEIIQKAHSNEIILDYKTKLQETIQ-KFGEYNIEYTLVSFE 188 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H +F V I L G SK+ +EQ AA E LK Sbjct: 189 GPPHRRKFVTEVSIDSLVKGVGEGYSKKESEQNAAKEALK 228 >gi|210612575|ref|ZP_03289366.1| hypothetical protein CLONEX_01568 [Clostridium nexile DSM 1787] gi|210151500|gb|EEA82507.1| hypothetical protein CLONEX_01568 [Clostridium nexile DSM 1787] Length = 231 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 110/212 (51%), Gaps = 5/212 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L++RIGY F + LL+ AL HSS ++ + ERLEFLGD +L L+ S LF Sbjct: 8 LQERIGYTFRRQELLKSALMHSSYTNETHLPKYKCNERLEFLGDAVLELVSSEFLFFADR 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ S+V + + ARE++L ++ + SI +D +E+LI Sbjct: 68 KMPEGELTKTRASMVCEPSLAFCAREIELGKYLFMGRGEENTGGRERDSITSDALEALIG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG A F+ K+ L+ K D+KT LQE A F Y + GPD Sbjct: 128 AIYLDGGFANAKEFILKFV-LNDLEHKKLFYDSKTILQEIVQAHFPYGVLYHLIKEEGPD 186 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 H+ FTV V I +G +K+AAEQ AA Sbjct: 187 HNKSFTVAVHIGEECYGEGTGRTKKAAEQEAA 218 >gi|78044311|ref|YP_360276.1| ribonuclease III [Carboxydothermus hydrogenoformans Z-2901] gi|90101616|sp|Q3AC58|RNC_CARHZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|77996426|gb|ABB15325.1| ribonuclease III [Carboxydothermus hydrogenoformans Z-2901] Length = 235 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHF 63 +LEK +G+ F N S+L A+TH S + + E ERLEFLGD +L L IS LF F Sbjct: 8 SLEKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFISDYLFRTF 67 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ + LV AE+ ++A +++L F+R+ K + S A+ VE++I Sbjct: 68 PQKSEGDLTKLRSRLVCAESLYELAFKINLDKFLRLGKGEFKAGGNQRMSNLANAVEAVI 127 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+Y D GIE A +F+ + + ++ + +D KT LQE + Y++ Sbjct: 128 GAVYFDCGIEAAFSFITRLYGEKLKPENLEQLPKDEKTTLQELLQKEKNNVLRYEILLEE 187 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223 GP H FT V I+ A G SK+ AEQ AA E+LK E Sbjct: 188 GPPHQKIFTAGVIINDKLIATGRGKSKKEAEQEAAKKALELLKNE 232 >gi|160938006|ref|ZP_02085363.1| hypothetical protein CLOBOL_02899 [Clostridium bolteae ATCC BAA-613] gi|158439000|gb|EDP16755.1| hypothetical protein CLOBOL_02899 [Clostridium bolteae ATCC BAA-613] Length = 234 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 69/212 (32%), Positives = 116/212 (54%), Gaps = 5/212 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFD 64 LE+RI Y F N++L +ALTHSS ++ ++ + ERLEFLGD +L ++ S L+ ++ Sbjct: 8 LEERIAYEFKNKNLFTQALTHSSYANEHRLDHSRCNERLEFLGDAVLEIVTSEFLYRKYE 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+L+ S+V T + A +++L ++ + S+ +D +E+LI Sbjct: 68 TLPEGDLTKIRASIVCEPTLAYCAGDIELGQYLYLGKGEDATGGRNRNSVVSDAMEALIG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG A F+ ++ ++ + D+KT LQE ++ Y++ GPD Sbjct: 128 AIYLDGGFANAKEFIHRFILND-IEHKQLFYDSKTILQEMVQSRQEAPLSYEIIREEGPD 186 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 H+ F V +I +G +K+AAEQVAA Sbjct: 187 HNKSFEVCAKIGDEEVGRGAGRTKKAAEQVAA 218 >gi|149374709|ref|ZP_01892483.1| ribonuclease III [Marinobacter algicola DG893] gi|149361412|gb|EDM49862.1| ribonuclease III [Marinobacter algicola DG893] Length = 229 Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 114/220 (51%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++RIGY F L ALTH S + ++ ERLEFLGD I+ ++I+ L+ HF+ A+E Sbjct: 10 LQRRIGYQFKTPERLLLALTHRSFGN---QNNERLEFLGDSIVNMVIAEYLYLHFEKARE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +V T +++ RE +L ++R+ S K SI AD VES+I A+YL Sbjct: 67 GQLSRLRARMVKGVTLAEIGREFELGKYLRLGSGEMKSGGFRRESILADAVESIIGAIYL 126 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D V ++++ R L ++D KT LQE+ ++ P Y V G H Sbjct: 127 DSDFHTCREQVLRWFEVRLQKLDLQDTQKDPKTRLQEYLQSRQFPLPRYDVISVDGEAHA 186 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 F V + L G S+R AEQ AA LK+ G+ Sbjct: 187 QTFHVSCALPSLDRKTTGTGNSRRIAEQQAARNALKQLGV 226 >gi|218132444|ref|ZP_03461248.1| hypothetical protein BACPEC_00303 [Bacteroides pectinophilus ATCC 43243] gi|217992554|gb|EEC58556.1| hypothetical protein BACPEC_00303 [Bacteroides pectinophilus ATCC 43243] Length = 234 Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 116/220 (52%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L++ +GY+F + SLL+ ALTHSS ++ + + ERLEFLGD +L L+ S LFN Sbjct: 14 NELQQAMGYSFDDVSLLKHALTHSSYANELRINKTGNNERLEFLGDAVLELVSSEYLFNE 73 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG LS S+V + + AR++ L +I + SI +D +E++ Sbjct: 74 HKDVNEGSLSKLRASMVCEPSLAFCARDISLQKYIMLGKGEDATGGRQRDSITSDALEAV 133 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I A+YLDGG E A F+ + L + K D+KT LQE A TPEY++T G Sbjct: 134 IGAIYLDGGFEPAKKFIMAHVLND-LDNKKLFYDSKTILQEILQAD-NKTPEYRITGEEG 191 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P+H F+ V G +K+AAEQ AA + + R Sbjct: 192 PEHSKTFSAEVLDGSTVLGHGSGHNKKAAEQQAAYDAILR 231 >gi|300854469|ref|YP_003779453.1| dsRNA-specific ribonuclease [Clostridium ljungdahlii DSM 13528] gi|300434584|gb|ADK14351.1| dsRNA-specific ribonuclease [Clostridium ljungdahlii DSM 13528] Length = 235 Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 121/219 (55%), Gaps = 6/219 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LEK+ +F+N+ ++E ALTHSS ++ + + ERLEFLGD +L L IS LF + S Sbjct: 10 LEKKFNMSFSNKEIIEVALTHSSYANGRKNIKFNERLEFLGDSVLQLCISEYLFLKYKSK 69 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ + + +V + VA++ +L +I++S TSI AD VE++IAA+ Sbjct: 70 PEGELTKKRSLIVCENSLYHVAKKWNLGKYIKMSKGEEITGGRERTSILADCVEAIIAAI 129 Query: 127 YLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YL+ G E G F+ + ++ + A+K+ + D KT+LQE V+ EY + GP Sbjct: 130 YLNFGYENTGKFIIENFQDIIENAIKN-RIIMDYKTKLQETLQKDGDVSIEYNLVKYEGP 188 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H +F V G+ SK+ +EQ AA + L + Sbjct: 189 PHRRKFYTEVCTEKNVLGSGVGYSKKESEQNAAQDALMK 227 >gi|288941442|ref|YP_003443682.1| ribonuclease III [Allochromatium vinosum DSM 180] gi|288896814|gb|ADC62650.1| ribonuclease III [Allochromatium vinosum DSM 180] Length = 225 Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 115/217 (52%), Gaps = 6/217 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + +G+ F LL +ALTH S+ S + ERLEFLGD ++G +I+ L+ F A E Sbjct: 8 LAQALGHRFTREELLIQALTHRSVGSS---NNERLEFLGDALIGFVIAEALWERFPKADE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS SLV E+ +++AR+L L +R+ + + SI AD +E+++ A+YL Sbjct: 65 GTLSRMRASLVKRESLARLARDLKLGDSLRLGAGELRTGGHARDSILADALEAVLGAVYL 124 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G E T V + + R ++ R +D KT LQEW + PEY V G HD Sbjct: 125 DAGFERTRTVVLELFAARLEQTDAERAGKDPKTRLQEWLQSYKRPLPEYLVLSIDGDQHD 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 F V ++ +G S+R AEQ AA +L+R Sbjct: 185 QTFIVSCQLQDADVTTRGTGTSRRRAEQAAAESMLER 221 >gi|260881779|ref|ZP_05893556.1| ribonuclease III [Mitsuokella multacida DSM 20544] gi|260847870|gb|EEX67877.1| ribonuclease III [Mitsuokella multacida DSM 20544] Length = 247 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 116/219 (52%), Gaps = 5/219 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHFDS 65 L +R+G F + +LL++ALTH+S ++ + + ERLEFLGD +L L ST L+ HF Sbjct: 20 LSERLGVTFHDIALLDQALTHTSYANESKRNTAHNERLEFLGDAVLELASSTYLYEHFPE 79 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL+ S+V + T +++A L L ++ + + DV E++I A Sbjct: 80 MPEGELTKTRASIVCSTTLAKLATGLHLGDYLLLGRGEEMGGGRTRQTNLEDVFEAVIGA 139 Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD G E A +V + + + G +D KT LQE K G + Y++ SGP Sbjct: 140 VYLDQGWEAAQAYVVRQLRGEFENAEHGAILKDYKTILQEIVFRKEGQSIAYELVSESGP 199 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 DH FT V ++G +G SK+ AEQ AA L++ Sbjct: 200 DHAKEFTFRVRVTGKVMGEGTGHSKKEAEQHAARRALEK 238 >gi|71892313|ref|YP_278047.1| RNase III [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|90101614|sp|Q492D1|RNC_BLOPB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71796419|gb|AAZ41170.1| RNase III [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 229 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 9/221 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L++++GY F LL +ALTH S S+ + E RLEFLGD IL +I+ LL++ F Sbjct: 4 NALQEKLGYIFNRYDLLLQALTHRSSSNQHNE---RLEFLGDAILNYVIANLLYHRFPHI 60 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG +S +LV T + +ARE +L ++++ K SI A+ +E+LI + Sbjct: 61 SEGGMSRMRANLVRENTLATLAREFNLGDYLQLGQGELKSGGYQRESILANTIEALIGGI 120 Query: 127 YLDGGIEVAGTFVDKYWKQR-----ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +LD I+ + ++K R S ++D KT LQE+ + P Y + Sbjct: 121 FLDSNIQTIEILIINWYKIRIDHMDPYASYDTQKDPKTRLQEYMQRRRLPLPVYWINQII 180 Query: 182 GPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 G H+ FT+ ++S L P G S+R AEQ AAA+VL+ Sbjct: 181 GEAHNQIFTINCQVSELTQPIIGCGSSRRRAEQNAAAKVLE 221 >gi|21230730|ref|NP_636647.1| ribonuclease III [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769274|ref|YP_244036.1| ribonuclease III [Xanthomonas campestris pv. campestris str. 8004] gi|188992425|ref|YP_001904435.1| ribonuclease III [Xanthomonas campestris pv. campestris str. B100] gi|24212269|sp|Q8PB52|RNC_XANCP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|81304767|sp|Q4USF7|RNC_XANC8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|21112323|gb|AAM40571.1| ribonuclease III [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574606|gb|AAY50016.1| ribonuclease III [Xanthomonas campestris pv. campestris str. 8004] gi|167734185|emb|CAP52393.1| Ribonuclease III [Xanthomonas campestris pv. campestris] Length = 226 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 79/211 (37%), Positives = 110/211 (52%), Gaps = 6/211 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ LL +AL H S + E RLEFLGD I+ LLI+ L+ + A EG L+ Sbjct: 12 IGHAFADPGLLAQALRHRSAGTPHNE---RLEFLGDGIVNLLIAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P+Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEPSLAALPVGKAEKDPKTRLQEWLQARQLPLPQYALISESGDEHAKQFH 188 Query: 191 VVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220 V + A A+G S+R AEQ AAA V+ Sbjct: 189 VACILEQPAARAEGQGTSRRLAEQQAAATVI 219 >gi|254481213|ref|ZP_05094458.1| ribonuclease III [marine gamma proteobacterium HTCC2148] gi|214038376|gb|EEB79038.1| ribonuclease III [marine gamma proteobacterium HTCC2148] Length = 232 Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 116/208 (55%), Gaps = 6/208 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++ +GY FA++SLL+ ALTH S+ + ERLEFLGD I+ +I+ L+ F A+E Sbjct: 11 LQRALGYQFADKSLLQLALTHRSVG---GRNNERLEFLGDSIVNHIIAEALYRQFPDARE 67 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S SLV +T ++VARELDL + + RK SI AD +E++ A+ + Sbjct: 68 GDMSRMRASLVKGDTLAEVARELDLGEHLLLGPGERKSGGKRRGSILADGLEAVAGAILI 127 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D + + V ++++R L +DAKT LQE+ + PEY++ G DH+ Sbjct: 128 DSDVAACRSCVLTWFRERLDLLSLDGADKDAKTLLQEYLQGRRSPLPEYELLGVVGEDHE 187 Query: 187 PRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 +F V I+ + +G S+R AEQ Sbjct: 188 QQFHVACRIAKPVLVVEGDGSSRRKAEQ 215 >gi|253581846|ref|ZP_04859070.1| ribonuclease III [Fusobacterium varium ATCC 27725] gi|251836195|gb|EES64732.1| ribonuclease III [Fusobacterium varium ATCC 27725] Length = 235 Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 7/229 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60 Y LE +GY+F N+ LL+ +L H S + + + S ERLE LGD +L L+++ L+ Sbjct: 4 NYLELEGNLGYSFNNKELLKNSLIHRSFGNEHWRYKKISNERLELLGDAVLDLVVTEYLY 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +S+ EG+L+ + +VS + +++++D+ ++ +S +SI D E Sbjct: 64 KSHESSTEGDLAKIKSMVVSEPVLASISKKMDVGKYLLLSKGEEMTGGRERSSILGDAFE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 +++ A+YLD E A + + K K D KT LQE++ ++ + P Y+V Sbjct: 124 AILGAIYLDSDFETAKKYALSHIKDSIDHVDKNEDILDFKTILQEYSQREYKIIPSYEVI 183 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 +GPDH F + V I G +G +K++AEQ AA E+ K+ G+ T Sbjct: 184 RETGPDHQKVFEIEVRI-GERTGRGTGKNKKSAEQSAAKELCKKLGVKT 231 >gi|241763850|ref|ZP_04761895.1| Ribonuclease III [Acidovorax delafieldii 2AN] gi|241366894|gb|EER61308.1| Ribonuclease III [Acidovorax delafieldii 2AN] Length = 227 Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 111/211 (52%), Gaps = 8/211 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S L+ R+ + F+N SLL++A+TH S S + E RLEFLGD +L L +++LL+ Sbjct: 6 SALQDRLQHHFSNASLLQRAITHRSFSADHNE---RLEFLGDSVLNLAVASLLYQRLSDL 62 Query: 67 KEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS VR N LV +T Q+A L ++ +R+ K SI AD +E+LI A Sbjct: 63 PEGDLSRVRAN-LVKQDTLHQLALRLQVSDVLRLGEGESKSGGQNRPSILADALEALIGA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD G A V + ++ + +D KT LQEW + P Y V G Sbjct: 122 VYLDAGYSRAEALVHRLFQGVEINPQMQAAAKDPKTALQEWLQGRKMKLPHYSVVATVGA 181 Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 H F V EI+ L A+ G+ S+RA EQ Sbjct: 182 AHRQTFDVECEIAELGLAERGIGGSRRAGEQ 212 >gi|94263438|ref|ZP_01287251.1| Ribonuclease III [delta proteobacterium MLMS-1] gi|93456168|gb|EAT06307.1| Ribonuclease III [delta proteobacterium MLMS-1] Length = 233 Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 76/201 (37%), Positives = 103/201 (51%), Gaps = 4/201 (1%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 +GY F SLLE AL HSS + + S ERLEFLGD +LGL ++ LL+ + EG Sbjct: 15 MGYRFKRTSLLELALVHSSRAAEAGKGVSSNERLEFLGDAVLGLAVAALLYEAHPTMPEG 74 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV+ E + +AR+L L FIR+ SI A E+L+ A+YLD Sbjct: 75 DLSRHRAALVNEEHLAGMARQLALGEFIRLGRGEEATGGRDKPSILAATFEALVGAVYLD 134 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 GG E A + + R D+K+ LQE + G P Y + GPDHD R Sbjct: 135 GGYEPALALLRPLFAPWVANPPLPRISDSKSALQEVLQQRHGEGPVYYLENEEGPDHDKR 194 Query: 189 FTVVVEISGLAPAQGMDCSKR 209 FTV VE+ G +G K+ Sbjct: 195 FTVRVELQGKVLGRGRGRGKK 215 >gi|261492470|ref|ZP_05989024.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496943|ref|ZP_05993311.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307467|gb|EEY08802.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311833|gb|EEY12982.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 224 Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 118/220 (53%), Gaps = 6/220 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY F N L +ALTH S + ++ ERLEFLGD IL I +L++ F Sbjct: 1 MQLERLQKKLGYQFHNLDYLIQALTHRSAA---TKNNERLEFLGDSILNFTIGKVLYDKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EGELS +LV +T + +AR+ DL ++++ K SI +D VE++I Sbjct: 58 PKSNEGELSRMRATLVREQTLAIIARKFDLGDYLKLGPGELKSGGFRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD + A V+ ++ + + G ++D KT LQE+ + PEY V Sbjct: 118 AAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEFLQGRKLPLPEYDVLDIK 177 Query: 182 GPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220 G H+ F V ++ + G+ S+R AEQ AA + L Sbjct: 178 GEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAAEKAL 217 >gi|51892591|ref|YP_075282.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863] gi|81388984|sp|Q67PF5|RNC_SYMTH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|51856280|dbj|BAD40438.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863] Length = 235 Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 77/217 (35%), Positives = 114/217 (52%), Gaps = 9/217 (4%) Query: 13 IGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +GY F + SLL +ALTH++ + H + ERLEFLGD +LG++I+ L+ + EGE Sbjct: 18 LGYEFRDESLLLEALTHTTYANEHPRARANERLEFLGDSVLGMVIAAHLYERYPDLPEGE 77 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYL 128 L+ ++V + ++ AR L + +R R + S S +D E+++ ALYL Sbjct: 78 LTKIRAAVVCEPSLAERARVLGIGRHMRFG---RGEAVSGRDRDSTLSDAFEAVVGALYL 134 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 DGG+E A FV + Q A + G R D KT+LQE + P+Y++ GP H Sbjct: 135 DGGLEAAQRFVLRELGQLVEAARQGLVRVDYKTQLQEQLQRQGAAAPQYRLLVEEGPAHL 194 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF V V G G +K+ AEQ AA + L E Sbjct: 195 RRFQVGVYFEGRLLGTGWGRNKKEAEQEAARQALMPE 231 >gi|317491018|ref|ZP_07949454.1| ribonuclease III [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920565|gb|EFV41888.1| ribonuclease III [Enterobacteriaceae bacterium 9_2_54FAA] Length = 226 Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 123/225 (54%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+K++GY F + LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVTNRLQKKLGYTFQQQELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIERLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL+ P G+ S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVIGVGSSRRKAEQAAAEQALKQ 222 >gi|90580325|ref|ZP_01236132.1| ribonuclease III [Vibrio angustum S14] gi|90438627|gb|EAS63811.1| ribonuclease III [Vibrio angustum S14] Length = 224 Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 111/204 (54%), Gaps = 6/204 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++++GY F N L+ ALTH S + ++ E RLEFLGD IL +I+ L++ F S E Sbjct: 8 LQRKLGYQFNNCELMTLALTHRSANGTHNE---RLEFLGDSILSFVIADDLYHRFPSVDE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV +T +++ RE +L + + K SI AD VE++I A+YL Sbjct: 65 GDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFRRDSILADCVEAIIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D +E + V ++K R ++ G ++D KT LQE + P Y VT G H+ Sbjct: 125 DSDVEQVRSIVLAWYKTRLDTIEPGINQKDPKTRLQECLQGRRLPLPAYTVTKVQGEAHN 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKR 209 FTV +++GL P G S+R Sbjct: 185 QEFTVQCDVTGLDKPVIGKGGSRR 208 >gi|77416567|sp|Q7UGZ7|RNC_RHOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 266 Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 119/213 (55%), Gaps = 9/213 (4%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +GY F + LL ALTH+S + S ERLEFLGD +LGL + LFN + EG+L+ Sbjct: 41 LGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVCEWLFNEYPEYSEGDLT 100 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +++VS +C +VA +L L + V + ++ S+ S+ +DV E++IAALY+DGG Sbjct: 101 KIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNR-SYPKSLVSDVFEAVIAALYIDGGP 159 Query: 133 EVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 E+ + K W + + + K+ LQ++A + TP YK+ +GPDH F Sbjct: 160 EIVRDRL-KLWLAEEVNLAVDTQGSGNHKSVLQQFAQRELSATPVYKLIRETGPDHRKMF 218 Query: 190 TV--VVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +V+ APA G + K+ AEQ AAA L Sbjct: 219 LMGAMVDDRRFAPAWGNN--KKDAEQRAAANAL 249 >gi|320161647|ref|YP_004174872.1| ribonuclease III [Anaerolinea thermophila UNI-1] gi|319995501|dbj|BAJ64272.1| ribonuclease III [Anaerolinea thermophila UNI-1] Length = 237 Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 121/220 (55%), Gaps = 5/220 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYE---RLEFLGDRILGLLISTLLFNHFDSAK 67 R+G +F + LL +ALTH S + + E+ E RLEFLGD +L ++ L+N + Sbjct: 15 NRLGLSFKSFFLLSRALTHRSYLNEHPEAIEDNERLEFLGDAVLDFVVGAWLYNRYPDMP 74 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+L+ + LVS E S+ AR++DL +R+ + ++ D E++I A+Y Sbjct: 75 EGDLTRMRSVLVSTEQLSEFARKVDLGRALRLGKGETQAGGRDRPALLCDAFEAVIGAIY 134 Query: 128 LDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD GIE F++ ++ A + + + D K+ LQEWA + P Y V SGP+H Sbjct: 135 LDSGIEGVRRFIEPMLEKAADEILARQTIEDPKSMLQEWAQGQGFQAPRYIVRSSSGPEH 194 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +F V V I+G G+ SK+AA + AAA+ LKR G+ Sbjct: 195 SKQFEVDVLINGQIYGSGIGSSKQAATKAAAADALKRLGL 234 >gi|302338403|ref|YP_003803609.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293] gi|301635588|gb|ADK81015.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293] Length = 244 Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 69/214 (32%), Positives = 114/214 (53%), Gaps = 5/214 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDS 65 EK +G F L A +H S ++ + ++ E+LEFLGD +LGL++S LF Sbjct: 20 FEKHVGIRFRKLEFLNLAFSHRSFANEQGTNVDNNEKLEFLGDSVLGLVVSEYLFALLPD 79 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ + +VS ++ +++AR++ + ++I + +I AD +E++I + Sbjct: 80 KAEGDLARVKSFVVSEDSLAEIARKIKVDNYILIGKGEEYSGGRNKKAILADCMEAIIGS 139 Query: 126 LYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD G + A +FV KY K + ++D KT LQE+ +F P Y + ++GP Sbjct: 140 FYLDSGFKAARSFVLKYLIPEINKVLENRHKKDYKTLLQEYVQKQFKSYPRYSLVKKTGP 199 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 DHD F + V+I G G +K+ AEQ AA Sbjct: 200 DHDRTFWIEVKIDGKVYGPGKGKNKKEAEQHAAG 233 >gi|238762797|ref|ZP_04623766.1| Ribonuclease 3 [Yersinia kristensenii ATCC 33638] gi|238699102|gb|EEP91850.1| Ribonuclease 3 [Yersinia kristensenii ATCC 33638] Length = 226 Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 6/212 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I G + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIHTVGRLILDWYRSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKR 209 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRR 209 >gi|32473407|ref|NP_866401.1| ribonuclease III [Rhodopirellula baltica SH 1] gi|32398087|emb|CAD78182.1| ribonuclease III [Rhodopirellula baltica SH 1] Length = 297 Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 119/213 (55%), Gaps = 9/213 (4%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +GY F + LL ALTH+S + S ERLEFLGD +LGL + LFN + EG+L+ Sbjct: 72 LGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVCEWLFNEYPEYSEGDLT 131 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +++VS +C +VA +L L + V + ++ S+ S+ +DV E++IAALY+DGG Sbjct: 132 KIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNR-SYPKSLVSDVFEAVIAALYIDGGP 190 Query: 133 EVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 E+ + K W + + + K+ LQ++A + TP YK+ +GPDH F Sbjct: 191 EIVRDRL-KLWLAEEVNLAVDTQGSGNHKSVLQQFAQRELSATPVYKLIRETGPDHRKMF 249 Query: 190 TV--VVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +V+ APA G + K+ AEQ AAA L Sbjct: 250 LMGAMVDDRRFAPAWGNN--KKDAEQRAAANAL 280 >gi|15601926|ref|NP_244998.1| ribonuclease III [Pasteurella multocida subsp. multocida str. Pm70] gi|13431826|sp|P57805|RNC_PASMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|12720269|gb|AAK02145.1| Rnc [Pasteurella multocida subsp. multocida str. Pm70] Length = 225 Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 77/217 (35%), Positives = 112/217 (51%), Gaps = 8/217 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+++IGY F +LL++ALTH S + + E RLEFLGD IL +I+ L++ F E Sbjct: 8 LQRQIGYQFNQPALLKQALTHRSAAVKHNE---RLEFLGDAILNFIIAEALYHQFPKCNE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +LV T + +AR+ +L ++ + K SI AD VE++I A+ L Sbjct: 65 GELSRMRATLVREPTLASLARQFELGDYLSLGPGELKSGGFRRESILADCVEAIIGAISL 124 Query: 129 DGGIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D + V ++W Q LK G ++D KT LQE+ K P Y V G H Sbjct: 125 DSDLATTTKIV-QHWYQAQLKQIQPGDNQKDPKTRLQEYLQGKRLPLPTYNVVEIKGEAH 183 Query: 186 DPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 FTV + + G S+R AEQ AA ++L+ Sbjct: 184 CQTFTVECYVKNIDRTFMGSGASRRKAEQAAAEKILQ 220 >gi|168188027|ref|ZP_02622662.1| ribonuclease III [Clostridium botulinum C str. Eklund] gi|169294133|gb|EDS76266.1| ribonuclease III [Clostridium botulinum C str. Eklund] Length = 237 Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 118/220 (53%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + +E ++ F + ++L+ ALTHSS + + S ERLEFLGD IL L IS LL+N + Sbjct: 10 NEVENKLKVKFNDINILDTALTHSSFINENKNINSNERLEFLGDSILQLCISELLYNKYK 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +V + +VA++ ++ +I +S TSI +D VE++IA Sbjct: 70 DEPEGFLTKKRALIVCGNSLHEVAKKWNIGKYINMSKGEEMTGGRTRTSILSDCVEAIIA 129 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFG-VTPEYKVTFRS 181 ++YLD G EVA F+ + + + K S + D KT+LQE KFG EY + Sbjct: 130 SIYLDQGYEVAKNFILENFDEIIQKAHSNEIILDYKTKLQEIIQ-KFGEYNIEYTLISFE 188 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H +F V + L G SK+ +EQ AA E LK Sbjct: 189 GPPHRRKFVTEVSVDSLVKGIGEGYSKKESEQNAAREALK 228 >gi|218885347|ref|YP_002434668.1| ribonuclease III [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226735370|sp|B8DPB3|RNC_DESVM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|218756301|gb|ACL07200.1| Ribonuclease III [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 230 Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 5/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYE---RLEFLGDRILGLLISTLLFNH 62 + L+ I YAF + LL A+THSS ++ QE E RLEFLGD +L L +S LF Sbjct: 2 FEKLQSDIHYAFNDAGLLATAMTHSSWANEQQEHVEHNERLEFLGDAVLELCVSEELFAR 61 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+L+ LVS +++AR+L L ++R+ +S+ +D +E++ Sbjct: 62 FPGAREGDLTRMRARLVSKPALAELARDLQLELYLRLGRGEESQGGRERSSLLSDALEAM 121 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A++LDGG E A V R GK +D K+ LQE + F P Y + Sbjct: 122 LGAVFLDGGYERARAVVRHVLAARWPCDADGKRSKDYKSRLQELTQSLFRERPVYALMGS 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 SGP+H+ RF V + + + S + AEQ+AA LK Sbjct: 182 SGPEHEKRFEVRLTLPDGTVFTAIGPSVKRAEQMAAGLALK 222 >gi|294102050|ref|YP_003553908.1| ribonuclease III [Aminobacterium colombiense DSM 12261] gi|293617030|gb|ADE57184.1| ribonuclease III [Aminobacterium colombiense DSM 12261] Length = 240 Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 5/222 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFD 64 ++ ++R+GY F+ + +L++ALTH+S +H + ERLEFLGD +L L++S LFN + Sbjct: 17 ASFQERLGYLFSKKEILQEALTHASYAHEKGLHFHNERLEFLGDAVLELIVSANLFNGYP 76 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ ++LV S + + L IR+ L + S SI AD E+++ Sbjct: 77 DVDEGTLTRYRSNLVCKNALSVWGKSIGLPQIIRLGKGLEQQGAS--ASIIADTSEAVLG 134 Query: 125 ALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++ DGG A V +Y + Q + + D K+ +QE + P Y V GP Sbjct: 135 AVFSDGGFAAAQNVVRRYLFFQSNINAYDKNSDPKSLIQEETQKRGLGQPCYVVISTEGP 194 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 H P FTV ++I G G S + AE +AA LK+ G+ Sbjct: 195 PHMPIFTVQLKIDGQLYGSGQGHSIKVAETLAAQRALKQVGL 236 >gi|269792704|ref|YP_003317608.1| ribonuclease III [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100339|gb|ACZ19326.1| ribonuclease III [Thermanaerovibrio acidaminovorans DSM 6589] Length = 226 Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 81/217 (37%), Positives = 118/217 (54%), Gaps = 11/217 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSA 66 L+ R+GY FA+ LL +ALTHSS ++ Q Y ERLEFLGD +LGL ++ L+ S Sbjct: 14 LQDRVGYRFADTQLLIEALTHSSFANQAQLGYCNERLEFLGDSVLGLCVAEELYRRHPSE 73 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG L+ ++ VS+ ++ R L L +RV ++ M AD +E+LI A+ Sbjct: 74 REGRLTKLKSTGVSSHNLARSGRVLGLDRVLRVGKAIKGGPSEGMV---ADAMEALIGAV 130 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTFRSGPDH 185 YLDGG+E A V ++ +L S +D K+ LQE A + G+ P Y++ GP+H Sbjct: 131 YLDGGLEAARGIVSRHVSLDSLSS----QDPKSALQEMAQ-RLGIPLPSYRLVEVRGPEH 185 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F V V + G G S+R AE AA+ L R Sbjct: 186 RATFVVQVWLKGELMGVGNGGSRREAESKAASAALNR 222 >gi|167771632|ref|ZP_02443685.1| hypothetical protein ANACOL_03004 [Anaerotruncus colihominis DSM 17241] gi|167666272|gb|EDS10402.1| hypothetical protein ANACOL_03004 [Anaerotruncus colihominis DSM 17241] Length = 232 Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 119/226 (52%), Gaps = 13/226 (5%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63 S LE RIGY F N L+ ALTHSS ++ ++ S ER EFLGD +L +++S LF+ + Sbjct: 11 SALEGRIGYTFQNGRYLDIALTHSSYANEVKKNISSNERQEFLGDAVLSIVVSDYLFHTY 70 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EG+L+ +LV ++ + ++ L L F+++ SI AD E+LI Sbjct: 71 HLA-EGDLTKLRAALVCEKSLWEFSQALGLGDFLKLGRGEEMMGGRTRPSILADAFEALI 129 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF--- 179 AA+YLDGGIE A FV Y D KT LQE PE ++++ Sbjct: 130 AAIYLDGGIEPARRFVLGYIVDALENRDDLAFSDYKTMLQEIIQK----NPEERLSYVLV 185 Query: 180 -RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGPDH+ +F V V ++ G SK++AEQ AA E LK G Sbjct: 186 NESGPDHNKKFLVEVRLNSNVIGVGCGGSKKSAEQAAAREALKLMG 231 >gi|327538797|gb|EGF25444.1| ribonuclease III [Rhodopirellula baltica WH47] Length = 297 Score = 114 bits (285), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 119/213 (55%), Gaps = 9/213 (4%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +GY F + LL ALTH+S + S ERLEFLGD +LGL + LFN + EG+L+ Sbjct: 72 LGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVCEWLFNEYPEYSEGDLT 131 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +++VS +C +VA +L L + V + ++ S+ S+ +DV E++IAALY+DGG Sbjct: 132 KIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNR-SYPKSLVSDVFEAVIAALYIDGGP 190 Query: 133 EVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 E+ + K W + + + K+ LQ++A + TP YK+ +GPDH F Sbjct: 191 EIVRDRL-KLWLAEEVNLAVDTQGSGNHKSVLQQFAQRELSATPVYKLIRETGPDHRKMF 249 Query: 190 TV--VVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +V+ APA G + K+ AEQ AAA L Sbjct: 250 LMGAMVDDRRFAPAWGNN--KKDAEQRAAANAL 280 >gi|253682200|ref|ZP_04862997.1| ribonuclease III [Clostridium botulinum D str. 1873] gi|253561912|gb|EES91364.1| ribonuclease III [Clostridium botulinum D str. 1873] Length = 236 Score = 114 bits (285), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFD 64 + +E ++ F + +LL+ ALTHSS + + Y ERLEFLGD IL L IS L+N ++ Sbjct: 10 NEVENKLNVKFNDINLLDTALTHSSFVNENKNIYSNERLEFLGDSILQLCISEFLYNKYE 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +V + +VA+E ++ +I +S TSI +D VE++IA Sbjct: 70 QEPEGFLTKKRALIVCGNSLHEVAKEWNIGKYINMSKGEEMTGGRTRTSILSDCVEAIIA 129 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFG-VTPEYKVTFRS 181 ++YLD G A F+ + + + S + D KT+LQE KFG EYK+ Sbjct: 130 SIYLDQGYATAKKFIIDNFNEIIQKANSDQIILDYKTKLQETIQ-KFGDYNIEYKLVSFD 188 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H +F V I G SK+ AEQ AA E LK Sbjct: 189 GPPHRRKFITEVLIDSEVKGVGEGYSKKEAEQNAAKEALK 228 >gi|258514469|ref|YP_003190691.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771] gi|257778174|gb|ACV62068.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771] Length = 259 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/214 (35%), Positives = 113/214 (52%), Gaps = 6/214 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFD 64 L +++G A+ + +LL +ALTHSS + + + +RLEFLGD +L LL+S L++ + Sbjct: 11 LMQQVGVAWNDENLLWQALTHSSYVYESGSAAHTNNQRLEFLGDAVLELLVSGYLYSSYP 70 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ ++V + ++VAR+L+L +R+ + SI AD E+L+ Sbjct: 71 ECAEGELTKLRAAIVCEPSLAKVARQLNLGYCLRMGKGEERSGGRERPSILADSFEALLG 130 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G+E F K+ + G+ RD KTELQE K Y + G Sbjct: 131 AVYLDQGLEKTRMFALKFLAPVINDVLEGRVDRDYKTELQEMLQKKSPEPISYVILNEEG 190 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 PDH FT V G+ QG SK+ AEQ AA Sbjct: 191 PDHQKLFTAGVVYCGIIIGQGTGRSKKEAEQQAA 224 >gi|153853253|ref|ZP_01994662.1| hypothetical protein DORLON_00647 [Dorea longicatena DSM 13814] gi|149754039|gb|EDM63970.1| hypothetical protein DORLON_00647 [Dorea longicatena DSM 13814] Length = 235 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 110/212 (51%), Gaps = 5/212 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LE +IGY F + +L KA+ HSS ++ E ERLEFLGD +L L+ S LF++ Sbjct: 12 LEGKIGYKFDDFTLFTKAMIHSSYANEKHLPKYECNERLEFLGDAVLELVSSEFLFHNNP 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ S+V + AR+LDL ++ + S+ +D +E+LI Sbjct: 72 KLPEGELTKTRASMVCEPALAFCARDLDLGEYLLLGKGEDATGGRKRESVTSDAMEALIG 131 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG A F+ ++ + L++ K D+KT LQE A F Y + GPD Sbjct: 132 AIYLDGGFANAKEFIHRFI-LKDLENKKLFFDSKTILQEIVQANFKEVISYHLIGEEGPD 190 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 H+ F V V I G +K+AAEQ AA Sbjct: 191 HNKIFRVAVHIGEEEYGVGEGRTKKAAEQEAA 222 >gi|156740401|ref|YP_001430530.1| ribonuclease III [Roseiflexus castenholzii DSM 13941] gi|254807896|sp|A7NGC5|RNC_ROSCS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|156231729|gb|ABU56512.1| Ribonuclease III [Roseiflexus castenholzii DSM 13941] Length = 234 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 8/221 (3%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLLFNHFDS 65 R+ F+++ LL +ALTH S + + S ERLEFLGD I+ L +TL+F F Sbjct: 11 RLDVTFSDQRLLWQALTHRSFLNERVDERLSLFSNERLEFLGDAIVNFLATTLVFERFPD 70 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EG L+ +L+ ET + AR DL S ++ S+ AD E+++AA Sbjct: 71 AGEGYLTAWRAALIRTETLASFARRYDLGSHTLLARGEESSGARQRPSLLADTFEAVVAA 130 Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +++D G++ F+ +++ L+ D K++LQ A+ G+TP Y++ RSGP Sbjct: 131 IFIDQGLDAVRKFLLPLFEETLATLQEQGLPVDYKSKLQARIQAERGITPRYRMIERSGP 190 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +H P FT + G SK+AAEQ AA + L R G Sbjct: 191 EHQPEFTFEALAGDESLGTGRGASKQAAEQDAARDALDRLG 231 >gi|330721516|gb|EGG99556.1| Ribonuclease III [gamma proteobacterium IMCC2047] Length = 210 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 109/208 (52%), Gaps = 8/208 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L + +GY F + SLL+ ALTHSS + E RLEFLGD ILG +I+ LF F A Sbjct: 6 AKLSQSLGYQFRDESLLQTALTHSSFGQGHNE---RLEFLGDSILGWVIADALFKRFPHA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS LV T ++VAREL L ++R+ K SI AD E++I A+ Sbjct: 63 REGQLSRLRAGLVKGVTLAKVARELQLGHYLRLGQGEMKSGGFRRDSILADAFEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LD I + + R A +D KT LQE+ ++ P+Y++ SG D Sbjct: 123 FLDSDIATCQQIILVLFAGRLDAQTLDDTLKDPKTRLQEFLQSRKQPLPDYRILSTSGKD 182 Query: 185 HDPRFTVVVEISGLA---PAQGMDCSKR 209 H+ F V E+ +A A+G + + R Sbjct: 183 HEQVFRVACEVESIAEPFEAEGTESTLR 210 >gi|239814409|ref|YP_002943319.1| ribonuclease III [Variovorax paradoxus S110] gi|259646554|sp|C5CSF5|RNC_VARPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|239800986|gb|ACS18053.1| ribonuclease III [Variovorax paradoxus S110] Length = 228 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 116/219 (52%), Gaps = 6/219 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L++R+ ++F++ LL+ ALTH S S + E RLEFLGD +L L +S LL+ + Sbjct: 6 TALQERLKHSFSDTRLLQLALTHRSFSADHNE---RLEFLGDSVLNLAVSHLLYTRLSAL 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS +LV +T ++A EL L+ +R+ + SI AD +E+LI A+ Sbjct: 63 PEGDLSRVRANLVKQDTLHRLALELQLSPLLRLGEGEARSGGPNRPSILADALEALIGAV 122 Query: 127 YLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G A V + ++ + + +D KTELQEW P Y+V G Sbjct: 123 YLDAGFSAAEALVRRLYESVEINPRMDAVAKDPKTELQEWLQGHKMKLPVYRVAATLGAA 182 Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 H F V E+ L +G+ S+RA EQ AAA +L R Sbjct: 183 HKQTFDVECEVPELGLRERGIGGSRRAGEQAAAAAMLIR 221 >gi|325275444|ref|ZP_08141375.1| ribonuclease III [Pseudomonas sp. TJI-51] gi|324099420|gb|EGB97335.1| ribonuclease III [Pseudomonas sp. TJI-51] Length = 229 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 113/220 (51%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++GY F N+ + ALTH S + + ERLEFLGD IL + LF F A+E Sbjct: 8 LERKLGYTFKNQDQMLLALTHRSYAG---RNNERLEFLGDAILNFVAGEALFERFPQARE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS LV ET +++AR DL ++R+ S K SI AD +E+LI A+YL Sbjct: 65 GQLSRLRARLVKGETLARLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D +E A V + L +D KT LQE+ ++ P Y+V G H Sbjct: 125 DADMETARERVLAWLANEFEGLTLVDTNKDPKTRLQEFLQSRSCELPRYEVVDIQGEPHC 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 F V E+ L ++G S+R AEQVAAA L G+ Sbjct: 185 RTFFVECEVVLLNNKSRGQGVSRRIAEQVAAASALIALGV 224 >gi|332799147|ref|YP_004460646.1| Ribonuclease 3 [Tepidanaerobacter sp. Re1] gi|332696882|gb|AEE91339.1| Ribonuclease 3 [Tepidanaerobacter sp. Re1] Length = 238 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 112/220 (50%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFD 64 L++ IG F N + L +A H S+++ YQE+ +RLEFLGD +L L IS L+ H+D Sbjct: 14 LQENIGIQFNNLNTLNQAFIHPSLTNEKEKPYQENNQRLEFLGDAVLELAISEYLYRHYD 73 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+++ V + +Q+AR+L L ++ +S SI AD +E+LI Sbjct: 74 FLTEGQMTKIRAFTVCESSLAQIARQLFLGDYLILSKGEENTGGREKVSILADTLEALIG 133 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+Y+D + F+ K + K+ G++ D KT+LQE Y V SG Sbjct: 134 AIYIDKNYKTTYDFIIKNLEAIIFKAIQGEWGTDYKTDLQELLQKFDEDKILYNVVNESG 193 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 PDHD F V V G+ SK+ AEQ AA E L R Sbjct: 194 PDHDKLFCVEVVWKNKILGTGIGKSKKQAEQNAAKEALDR 233 >gi|163750600|ref|ZP_02157837.1| ribonuclease III [Shewanella benthica KT99] gi|161329595|gb|EDQ00586.1| ribonuclease III [Shewanella benthica KT99] Length = 230 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/215 (36%), Positives = 115/215 (53%), Gaps = 5/215 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + +GY F ++LL++ALTH S + + E RLEFLGD IL ++IS L++ F E Sbjct: 15 LCRTLGYQFNQQALLDQALTHRSANSKHNE---RLEFLGDSILSIIISDALYHQFPKVTE 71 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV + +++ E L ++++ K SI AD VE++I A+YL Sbjct: 72 GDLSRMRATLVCGKMLAEIGFEFKLGDYLKLGPGELKSGGFRRESIIADGVEAIIGAIYL 131 Query: 129 DGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 D E V +++ R A+ ++D KT LQE P YKVT G H Sbjct: 132 DADFETCRARVLSWYESRLAIIEPINQKDPKTLLQELLQGFKKPLPVYKVTDIKGEAHAQ 191 Query: 188 RFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 FTV + L P G+ S+R AEQ+AAA+VL+ Sbjct: 192 TFTVECSVEELKKPLVGVASSRRKAEQIAAAKVLE 226 >gi|327479794|gb|AEA83104.1| ribonuclease III [Pseudomonas stutzeri DSM 4166] Length = 229 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 116/220 (52%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LFNHF A+E Sbjct: 8 LERKLGYQFKDQELMLLALTHRSYA---GRNNERLEFLGDAILNFVAGEALFNHFPQARE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS LV ET + +AR +L +R+ S K SI AD +E+LI A+YL Sbjct: 65 GQLSRLRARLVKGETLAVLARGFELGDHLRLGSGELKSGGYRRESILADTLEALIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G++VA V + + L +D KT LQE+ ++ P Y+V G H Sbjct: 125 DAGMDVARERVIAWLANELQGLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEPHC 184 Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225 F V +++ L G S+R AEQVAAA L G+ Sbjct: 185 RTFFVECQVALLNDKTHGQGASRRIAEQVAAAAALIALGV 224 >gi|58700160|ref|ZP_00374668.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae] gi|58533321|gb|EAL57812.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae] Length = 183 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 96/178 (53%) Query: 47 GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 GD +L +++S LF F KEG L+ R LV T + VA+E+ L SFI +++ R + Sbjct: 1 GDSVLNMVVSATLFKLFPEEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCN 60 Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 + +E+LI A+Y+DGG+E F+ +YW++ A +D KT LQEW Sbjct: 61 GGRCNLKNLENSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQ 120 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PEY++ ++GP H+P FT+ V I SK+ AEQ AA +L++ G Sbjct: 121 KNKLPLPEYELVKQTGPAHNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEKIG 178 >gi|77457221|ref|YP_346726.1| ribonuclease III [Pseudomonas fluorescens Pf0-1] gi|90101638|sp|Q3KHL9|RNC_PSEPF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|77381224|gb|ABA72737.1| ribonuclease III [Pseudomonas fluorescens Pf0-1] Length = 229 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 87/230 (37%), Positives = 122/230 (53%), Gaps = 22/230 (9%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF+ F A Sbjct: 6 SRLERQLGYTFKDQELMVLALTHRSFAG---RNNERLEFLGDAILNFVAGEALFDRFPLA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS LV ET + +AR DL ++R+ S K SI AD +E+LI A+ Sbjct: 63 REGQLSRLRARLVKGETLAVLARGFDLGDYLRLGSGELKSGGFRRESILADALEALIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKF--------RRDAKTELQEWAHAKFGVTPEYK 176 YLD G+EVA ++R L +G+F +D KT LQE+ ++ P Y+ Sbjct: 123 YLDAGMEVA--------RERVLAWLAGEFEGLTLVDTNKDPKTRLQEFLQSRGCELPRYE 174 Query: 177 VTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 V G H F V E+ L ++G S+R AEQVAAA L G+ Sbjct: 175 VVDIQGEPHCRTFFVECEVVLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224 >gi|332529447|ref|ZP_08405406.1| ribonuclease III [Hylemonella gracilis ATCC 19624] gi|332041093|gb|EGI77460.1| ribonuclease III [Hylemonella gracilis ATCC 19624] Length = 223 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/216 (35%), Positives = 116/216 (53%), Gaps = 6/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ + F + +LL++ALTH S + E RLEFLGD +L L ++ LL+ + E Sbjct: 3 LQDHLQRPFTDAALLQRALTHRSFCADHNE---RLEFLGDSVLNLAVADLLYQRLHALPE 59 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV ET Q+A EL L+ +R+ + + SI AD +E+LI A+YL Sbjct: 60 GDLSRIRANLVKQETLHQLAMELGLSDLLRLGEGELRSGGNKRPSILADALEALIGAVYL 119 Query: 129 DGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G A V +++ + + +D KTELQEW A+ P+Y+V +G H Sbjct: 120 DAGYAAAQALVHHLYEKVEVTPQMQASAKDPKTELQEWLQARKLKLPQYRVVATTGAAHR 179 Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221 F V E+S + G+ S+RA EQ AAA +L+ Sbjct: 180 QTFDVECEVSEFQLTERGIGGSRRAGEQAAAAAMLQ 215 >gi|294139709|ref|YP_003555687.1| ribonuclease III [Shewanella violacea DSS12] gi|293326178|dbj|BAJ00909.1| ribonuclease III [Shewanella violacea DSS12] Length = 225 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/215 (36%), Positives = 115/215 (53%), Gaps = 5/215 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + +GY F ++ L++ALTH S S + E RLEFLGD IL ++IS L++ F E Sbjct: 10 LCRTLGYQFTQQAHLDQALTHRSASSKHNE---RLEFLGDSILSIIISDALYHQFPKVTE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV + +++ E L ++++ K SI AD VE++I A+YL Sbjct: 67 GDLSRMRATLVCGKMLAEIGFEFKLGDYLKLGPGELKSGGFRRESIIADGVEAIIGAIYL 126 Query: 129 DGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 D +E V +++ R A+ ++D KT LQE P YKVT G H Sbjct: 127 DADLETCRARVLSWYESRLAIIEPINQKDPKTLLQELLQGFKKPLPVYKVTDIKGEAHAQ 186 Query: 188 RFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 FTV + L P G+ S+R AEQ+AAA+VL+ Sbjct: 187 TFTVECSVEELKKPLVGVASSRRKAEQIAAAQVLE 221 >gi|302386299|ref|YP_003822121.1| ribonuclease III [Clostridium saccharolyticum WM1] gi|302196927|gb|ADL04498.1| ribonuclease III [Clostridium saccharolyticum WM1] Length = 233 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 113/212 (53%), Gaps = 5/212 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LE+RIGY F++R L+ +A+THSS ++ ++ E ERLEFLGD +L ++ S L++ + Sbjct: 8 LEERIGYRFSDRHLMTQAMTHSSYANEHRLNKLECNERLEFLGDSVLEVVSSDCLYHKYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ S+V T + A + L ++ + SI +D +E+LI Sbjct: 68 EKPEGDLTKIRASIVCEPTLAYCAESIRLGEYLLLGKGEEATGGRGRASIVSDAMEALIG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG A F+ ++ L+ + D+KT LQE K Y++ GPD Sbjct: 128 AIYLDGGFANAKEFILRFI-MNDLEHKQLFYDSKTILQEIVQRKTDEPLSYELLREEGPD 186 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 H+ F V I QG +K+AAEQVAA Sbjct: 187 HNKVFEAQVLIGQEVIGQGTGRTKKAAEQVAA 218 >gi|329894313|ref|ZP_08270183.1| Ribonuclease III [gamma proteobacterium IMCC3088] gi|328923109|gb|EGG30432.1| Ribonuclease III [gamma proteobacterium IMCC3088] Length = 221 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 119/226 (52%), Gaps = 14/226 (6%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ S L++ IGY F + SL+E AL H S+ ++ ERLEFLGD ++ +++ LF + Sbjct: 1 MQLSALQQAIGYQFKDLSLIELALAHRSVG---AKNNERLEFLGDSLVNHVVAEALFKRY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGE+S R LV ET + +ARE +L F+ + RK SI AD +E++ Sbjct: 58 PKAPEGEMSRRRAYLVKGETLAAIAREKNLGDFVELGQGERKSGGHRRKSILADALEAVA 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+ LD E A V +++ R F +DAKT LQEW + PEY + Sbjct: 118 AAILLDSDFETAKQVVFAWFRDRLNDETSFAASKDAKTSLQEWLQGRGLALPEYHLVATR 177 Query: 182 GPDHDPRFTVVVEISGLAPAQGMD-----CSKRAAEQVAAAEVLKR 222 G DH F V + P++G+ S+R AEQ +A ++L R Sbjct: 178 GEDHQKVFVVECRV----PSKGLKETASASSRRRAEQTSAQQILDR 219 >gi|225850066|ref|YP_002730300.1| ribonuclease III [Persephonella marina EX-H1] gi|225645108|gb|ACO03294.1| ribonuclease III [Persephonella marina EX-H1] Length = 249 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 115/220 (52%), Gaps = 8/220 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 R LE+++GY F +++L ALTHSS + Y + YE LEFLGD +L L++S +L Sbjct: 12 RIKKLEQKLGYVFKDKNLPLTALTHSSFAAEYHKEIKDYEVLEFLGDAVLSLIVSEILIK 71 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A EGELS ++++S S++AR L L + +S S+ DV ES Sbjct: 72 TFPEASEGELSQTRSAVISEAYLSRLARILGLNELVLLSRGEIAQKGMERESLLCDVFES 131 Query: 122 LIAALYLDG--GIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + A+Y+D I++ ++++K ++K G RD K+ LQ FGV P+Y Sbjct: 132 VFGAVYVDCDYDIKIPREIFNRFFKDYLIESIKKGNIPRDYKSILQIMTQRLFGVVPKYS 191 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + GP+H+ FT+ + + G SK+ AE AA Sbjct: 192 MVSAEGPEHEKIFTMECSVDNVVRTFGTGKSKKEAETEAA 231 >gi|257468859|ref|ZP_05632953.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185] gi|317063109|ref|ZP_07927594.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185] gi|313688785|gb|EFS25620.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185] Length = 235 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 123/229 (53%), Gaps = 7/229 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60 Y LE +GY+F N+ LL+ +L H S + + + S ERLE LGD +L L+++ L+ Sbjct: 4 NYLELEGNLGYSFNNKELLKNSLIHRSFGNEHWRYKKISNERLELLGDAVLDLVVTEYLY 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +S+ EG+L+ + +VS + +++++D+ ++ +S +SI D E Sbjct: 64 KSHESSTEGDLAKIKSMVVSEPVLASISKKMDVGKYLLLSKGEEMTGGRERSSILGDAFE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 +++ A+YLD E A + + + K D KT LQE++ ++ + P Y+V Sbjct: 124 AILGAIYLDSDFETAKKYALSHIQDSIDHVDKNEDILDFKTILQEYSQREYKIIPSYEVI 183 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 +GPDH F + V+I G +G +K++AEQ AA E+ K+ G+ T Sbjct: 184 RETGPDHQKIFEIEVKI-GDRTGRGTGKNKKSAEQSAAKELCKKLGVKT 231 >gi|223041196|ref|ZP_03611448.1| ribonuclease III [Campylobacter rectus RM3267] gi|222877555|gb|EEF12684.1| ribonuclease III [Campylobacter rectus RM3267] Length = 222 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 113/217 (52%), Gaps = 6/217 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE+++GY F + LL+ ALTH S+ ERLEFLGD ++ L+I LF+ F Sbjct: 3 NLEEKLGYKFKDEKLLKTALTHKSVKGGANN--ERLEFLGDAVMDLVIGDYLFHKFSRLS 60 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS +LV+ ++ +++A+ L+L I +S + SI +D E+L+ A+Y Sbjct: 61 EGDLSKLRAALVNEKSFAELAKYLNLGQLINISPAEEHNGGRLKASILSDAFEALMGAIY 120 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 L+ G + K + +R F R D KT LQE A+F P+Y + GPD Sbjct: 121 LESGFDAVRAASLKAF-ERCYPDINFDRMVKDYKTALQELTQARFAEIPKYVLVGSKGPD 179 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H F + + ++ ++ SK+ AEQ AA L+ Sbjct: 180 HKKEFEIALMLNEREISRAAGKSKKEAEQKAAKTALE 216 >gi|239624036|ref|ZP_04667067.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522067|gb|EEQ61933.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 235 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/212 (33%), Positives = 116/212 (54%), Gaps = 5/212 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFD 64 LE+RI Y F ++SL +ALTHSS ++ ++ + ERLEFLGD +L ++ S L++ + Sbjct: 8 LEERIDYQFKDQSLFSQALTHSSYANEHRLDHSRCNERLEFLGDAVLEIVTSDFLYHKYA 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+L+ S+V T + A ++ L ++ + S+ +D +E+LI Sbjct: 68 TLPEGDLTKIRASIVCEPTLAYCAGDIRLGEYLFLGKGEDATGGRGRNSVVSDAMEALIG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG A F+ ++ ++ + D+KT LQE ++ Y++ GPD Sbjct: 128 AIYLDGGFANAKEFIHRFILND-IEHKQLFYDSKTILQEMVQSRQAEALSYEILREEGPD 186 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 H+ F V +I +GM +K+AAEQVAA Sbjct: 187 HNKSFEVCAKIGDAEIGRGMGRTKKAAEQVAA 218 >gi|217967335|ref|YP_002352841.1| Ribonuclease III [Dictyoglomus turgidum DSM 6724] gi|217336434|gb|ACK42227.1| Ribonuclease III [Dictyoglomus turgidum DSM 6724] Length = 238 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/210 (35%), Positives = 115/210 (54%), Gaps = 5/210 (2%) Query: 16 AFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +F ++ LL +ALTH S H ++++ +RLEFLGD +L ++I+ +LF + A EG L+ Sbjct: 25 SFNDKDLLIEALTHPSFKHENPNFKQDNQRLEFLGDAVLNMIITEILFQRYREASEGFLT 84 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + LV ET + A+ LDL I + K SI +D+ E+ I ALYLD G Sbjct: 85 QKRIYLVKEETLYKKAKSLDLGELILLGVGEEKQGGRDKISILSDLFEAFIGALYLDKGY 144 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 E FV++ +K+ ++S + D K LQ + K G P+Y V+ GP+HD F V Sbjct: 145 EYTKNFVEEIFKE-EIESIEMEVDWKNLLQTYLQ-KEGKKPQYIVSREVGPEHDKTFYVE 202 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + I ++G +KR AE AA + L++ Sbjct: 203 LWIDDEKISEGEGKNKREAEIKAAQKALEK 232 >gi|242280465|ref|YP_002992594.1| ribonuclease III [Desulfovibrio salexigens DSM 2638] gi|242123359|gb|ACS81055.1| ribonuclease III [Desulfovibrio salexigens DSM 2638] Length = 234 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 117/220 (53%), Gaps = 5/220 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYE---RLEFLGDRILGLLISTLLFNH 62 +S L++ I Y F+ L ALTHSS ++ E E RLEFLGD +L L ++ LF Sbjct: 5 FSRLQQGIHYRFSQVKHLATALTHSSWANEQPEPVEDNERLEFLGDAVLELCVTEELFKR 64 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A EG+L+ + LV ++ + +ARELD+ F+++ +S+ AD +E++ Sbjct: 65 FKGAHEGQLTKIRSKLVKEKSLATIARELDINDFLKLGRGEEAQGGRNRSSLLADAMEAV 124 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG A F+ + + + + K +D K++LQE A+F P Y +T Sbjct: 125 IGAVFLDGGYAEAQKFIMRIFANKWPATFKIESSKDFKSKLQEVTQARFKERPTYVLTGT 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP+H+ F V + + S + AEQ AAA+ L Sbjct: 185 KGPEHEKIFMVNLNLPDGKSFDSEGSSLKKAEQTAAAKAL 224 >gi|257791118|ref|YP_003181724.1| ribonuclease III [Eggerthella lenta DSM 2243] gi|317488154|ref|ZP_07946728.1| ribonuclease III [Eggerthella sp. 1_3_56FAA] gi|257475015|gb|ACV55335.1| ribonuclease III [Eggerthella lenta DSM 2243] gi|316912741|gb|EFV34276.1| ribonuclease III [Eggerthella sp. 1_3_56FAA] Length = 281 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/215 (37%), Positives = 109/215 (50%), Gaps = 4/215 (1%) Query: 13 IGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +GY FA+ LL A+TH S + S + SYERLEFLGD ILG +++T+ F+ F EG Sbjct: 18 LGYRFADEQLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVATIAFDRFHDLDEGG 77 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ +LVS + S VA L A I S + S +V E+++AAL+LDG Sbjct: 78 LTRIKVALVSGASLSDVAERLGFADVIVFGSSETGTGRRGLHSALENVYEAVVAALFLDG 137 Query: 131 GIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 GIE A FV R + + + K+ LQE G+TP YK+ GP HD F Sbjct: 138 GIEAAEGFVRATLIPRMSADMAREPENPKSALQEKLQED-GITPTYKLVETQGPPHDRTF 196 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V A+G +K+ AE AA L R G Sbjct: 197 VAQVFAGSQGLARGTGRTKKEAESQAAKSTLARLG 231 >gi|237748853|ref|ZP_04579333.1| ribonuclease III [Oxalobacter formigenes OXCC13] gi|229380215|gb|EEO30306.1| ribonuclease III [Oxalobacter formigenes OXCC13] Length = 277 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 114/223 (51%), Gaps = 6/223 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 ++ + + L++RIGY+F LL+ ALTH S S + E RLEFLGD +L + + L+ Sbjct: 9 IAMMNVNVLQERIGYSFRQIDLLQTALTHRSFSSHHNE---RLEFLGDSLLNCVTAINLY 65 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG LS +SLV + ++A++LD++SF+R+ K SI AD +E Sbjct: 66 ERYVELNEGNLSRLRSSLVRQQALYEIAQKLDMSSFLRLGEGELKAGGFKRPSILADAME 125 Query: 121 SLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +L A++LD E + + + + L F +DAKT+LQE+ PEY+V Sbjct: 126 ALFGAIFLDSDFETVRRVITQLFTDMMKGLDPETFGKDAKTQLQEYLQGHKLALPEYQVV 185 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVL 220 G H+ F + I G S+RA EQ AA + L Sbjct: 186 ATHGAAHNQEFEIECTIGKFGIHVFGTGSSRRAGEQEAAQKAL 228 >gi|327470651|gb|EGF16107.1| ribonuclease III [Streptococcus sanguinis SK330] Length = 232 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + LE + F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENLKKALLE-QFDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E +F+ + + +++G F R D KT+LQE V Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIA 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V +GP H F V V I+G QG SK+ AEQ AA K+E Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGCKSGQGQGRSKKLAEQEAAKNAFKKE 227 >gi|187251071|ref|YP_001875553.1| ribonuclease III [Elusimicrobium minutum Pei191] gi|186971231|gb|ACC98216.1| Ribonuclease III [Elusimicrobium minutum Pei191] Length = 221 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/216 (32%), Positives = 117/216 (54%), Gaps = 4/216 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+ + Y+F N+ L+ +ALTH S + + + ERLEFLGD +LGL+ + +++ + Sbjct: 5 IEQVLDYSFKNKELIREALTHKSFTGERRSVKHNERLEFLGDSVLGLVAAEYIYSKYPEV 64 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG LS + LVS A ELDL +++ + + SI ++ +E+++ A+ Sbjct: 65 EEGVLSKIKSGLVSRHNLYLWASELDLGAYLALGAGEAATGGRTRESILSNAMEAVLGAV 124 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG E ++K+ ++L + D K+ LQE K+ PEY+V GP+H+ Sbjct: 125 YLDGGFESVKNIINKWISTQSLT--EVSSDYKSTLQEIVQKKYKSVPEYEVIQTVGPEHE 182 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 FTVVV +G +K+ AEQ AA L+ Sbjct: 183 KIFTVVVSSLKKELGRGRGKNKKLAEQDAAKNALEN 218 >gi|315221419|ref|ZP_07863340.1| ribonuclease III [Streptococcus anginosus F0211] gi|315189538|gb|EFU23232.1| ribonuclease III [Streptococcus anginosus F0211] Length = 232 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 113/224 (50%), Gaps = 7/224 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + L ++ G F + LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 5 HKVLSQQFGIVFQDEKLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLISEYLYK 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG+LS +++V E+ + +R+ FI++ K +I D+ E+ Sbjct: 65 KYPKKPEGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEA 124 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 + AL LD G+E F+ + + ++ G F + D KT+LQE V Y+VT Sbjct: 125 FLGALLLDKGVEAVKNFLYQVMIPK-VEVGDFEQVIDYKTKLQELLQVNGDVEIVYQVTS 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V V + G QG SK+ AEQ AA ++E Sbjct: 184 ESGPAHAKEFAVAVSVDGRTVGQGQGRSKKLAEQEAAKNAFEKE 227 >gi|40063418|gb|AAR38229.1| ribonuclease III [uncultured marine bacterium 580] Length = 231 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 113/223 (50%), Gaps = 6/223 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LEK I Y F + LL A+TH S HS + ERLEFLGD IL +++ LLF Sbjct: 1 METKELKILEKSIKYKFKDDKLLALAMTHRS--HSGMNN-ERLEFLGDSILNFVVADLLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F+ EG+LS + LV E S++ EL + F+ + K SI AD E Sbjct: 58 KKFNDLDEGDLSRLRSQLVKEEPLSKLGNELKIGDFLNLGVGELKSSGWRRPSILADAFE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+++DGG++ A F++ + + + +D KT LQE+ A+ P Y+V Sbjct: 118 ALIGAIFIDGGMKSAYKFIEDSYADLIEKINPKEIYKDPKTILQEFLQAQKVPLPSYEVI 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220 G H+ FTV +S +G S++ AEQ AA E + Sbjct: 178 NVEGEAHNQLFTVTCVVSKFDVKVEGGGRSRKIAEQEAAKEAM 220 >gi|325830746|ref|ZP_08164130.1| ribonuclease III [Eggerthella sp. HGA1] gi|325487153|gb|EGC89596.1| ribonuclease III [Eggerthella sp. HGA1] Length = 304 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/215 (37%), Positives = 109/215 (50%), Gaps = 4/215 (1%) Query: 13 IGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +GY FA+ LL A+TH S + S + SYERLEFLGD ILG +++T+ F+ F EG Sbjct: 41 LGYRFADEQLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVATIAFDRFHDLDEGG 100 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ +LVS + S VA L A I S + S +V E+++AAL+LDG Sbjct: 101 LTRIKVALVSGASLSDVAERLGFADVIVFGSSETGTGRRGLHSALENVYEAVVAALFLDG 160 Query: 131 GIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 GIE A FV R + + + K+ LQE G+TP YK+ GP HD F Sbjct: 161 GIEAAEGFVRATLIPRMSADMAREPENPKSALQEKLQED-GITPTYKLVETQGPPHDRTF 219 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V A+G +K+ AE AA L R G Sbjct: 220 VAQVFAGSQGLARGTGRTKKEAESQAAKSTLARLG 254 >gi|269127639|ref|YP_003301009.1| ribonuclease III [Thermomonospora curvata DSM 43183] gi|268312597|gb|ACY98971.1| ribonuclease III [Thermomonospora curvata DSM 43183] Length = 268 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/213 (37%), Positives = 114/213 (53%), Gaps = 8/213 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+ +G + +R LLE+ALTH S ++ + ERLEFLGD +LGL+++ LF + Sbjct: 29 LERALGVSI-SRELLERALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLFRNHPDL 87 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V+ + VAR L ++IR+ TSI AD +E+LI A+ Sbjct: 88 PEGQLAKLRAAVVNMRALAGVARSLGAGAYIRLGRGEEGTGGRDKTSILADTLEALIGAV 147 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEW-AHAKFGVTPEYKVTFRSGP 183 YL+ G++ A V + + KS D KT LQE A + GV PEY V SGP Sbjct: 148 YLEHGLDEAAKLVHRLFDSLIDKSASLGAGLDWKTSLQELTAEEELGV-PEYHVA-ESGP 205 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 DH F V + G+ G SK+ AEQ AA Sbjct: 206 DHQKTFRATVRVGGVTYGSGEGRSKKEAEQRAA 238 >gi|89075088|ref|ZP_01161529.1| ribonuclease III [Photobacterium sp. SKA34] gi|89049175|gb|EAR54740.1| ribonuclease III [Photobacterium sp. SKA34] Length = 239 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 110/204 (53%), Gaps = 6/204 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++++GY F N L+ ALTH S + ++ E RLEFLGD IL +++ L++ F S E Sbjct: 23 LQRKLGYQFNNCELMTLALTHRSANGTHNE---RLEFLGDSILSFVVADDLYHRFPSVDE 79 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV +T +++ RE +L + + K SI AD VE++I A+YL Sbjct: 80 GDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFRRDSILADCVEAIIGAIYL 139 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D +E V ++K R ++ G ++D KT LQE + P Y VT G H+ Sbjct: 140 DSDVEQVRRIVLAWYKTRLDTIEPGINQKDPKTRLQECLQGRRLPLPAYTVTKVQGEAHN 199 Query: 187 PRFTVVVEISGL-APAQGMDCSKR 209 FTV +++GL P G S+R Sbjct: 200 QEFTVQCDVTGLDKPVIGKGGSRR 223 >gi|70728453|ref|YP_258202.1| ribonuclease III [Pseudomonas fluorescens Pf-5] gi|68342752|gb|AAY90358.1| ribonuclease III [Pseudomonas fluorescens Pf-5] Length = 225 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 118/222 (53%), Gaps = 6/222 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+++GY+F ++ L+ ALTH S + + ERLEFLGD IL + LF F A Sbjct: 2 SRLERQLGYSFKDQELMLLALTHRSFAG---RNNERLEFLGDAILNFVAGEALFERFPQA 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS LV ET + +AR DL ++R+ S K SI AD +E+LI A+ Sbjct: 59 REGQLSRLRARLVKGETLAVLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 118 Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G+E A V + +L +D KT LQE+ ++ P Y+V G Sbjct: 119 YLDAGMETARDRVLSWLASEFESLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEP 178 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 H F V E++ L ++G S+R AEQVAAA L G+ Sbjct: 179 HCRTFFVECEVTLLNEKSRGQGVSRRIAEQVAAAAALIALGV 220 >gi|66047178|ref|YP_237019.1| ribonuclease III [Pseudomonas syringae pv. syringae B728a] gi|257486563|ref|ZP_05640604.1| ribonuclease III [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628144|ref|ZP_06461098.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649890|ref|ZP_06481233.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. 2250] gi|289676656|ref|ZP_06497546.1| ribonuclease III [Pseudomonas syringae pv. syringae FF5] gi|298488677|ref|ZP_07006706.1| Ribonuclease III [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302186917|ref|ZP_07263590.1| ribonuclease III [Pseudomonas syringae pv. syringae 642] gi|75500898|sp|Q4ZPE1|RNC_PSEU2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|63257885|gb|AAY38981.1| Ribonuclease III [Pseudomonas syringae pv. syringae B728a] gi|298156750|gb|EFH97841.1| Ribonuclease III [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330871241|gb|EGH05950.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330898515|gb|EGH29934.1| ribonuclease III [Pseudomonas syringae pv. japonica str. M301072PT] gi|330950056|gb|EGH50316.1| ribonuclease III [Pseudomonas syringae Cit 7] gi|330973032|gb|EGH73098.1| ribonuclease III [Pseudomonas syringae pv. aceris str. M302273PT] gi|330989032|gb|EGH87135.1| ribonuclease III [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010046|gb|EGH90102.1| ribonuclease III [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 229 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 117/222 (52%), Gaps = 6/222 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF F A Sbjct: 6 SRLERQLGYTFKDQELMVLALTHRSFAGR---NNERLEFLGDAILNFVAGEALFERFPQA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS LV ET + +AR DL ++R+ S K SI AD +E+LI A+ Sbjct: 63 REGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G+E A V + +L +D KT LQE+ ++ P Y+V G Sbjct: 123 YLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEP 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 H F V EI+ L ++G S+R AEQVAAA L G+ Sbjct: 183 HCRTFFVECEINLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224 >gi|291539668|emb|CBL12779.1| RNAse III [Roseburia intestinalis XB6B4] Length = 228 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 111/213 (52%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQES-YERLEFLGDRILGLLIS 56 MS L+ L+ RIGY F LL +ALTHSS + H + S ERLEFLGD +L ++ S Sbjct: 1 MSKLQ--ELQNRIGYTFEKEGLLRQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ ++ EG+L+ S+V T + RE+DL ++ + + SI + Sbjct: 59 DFLYRNYPDLPEGDLTKLRASIVCEPTLALCTREMDLGDYLLLGKGENQTGGRKRKSILS 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +ES+I A+YLDGG E A F+ K+ ++ K D+KT LQE + + Y+ Sbjct: 119 DALESVIGAIYLDGGFEPAKKFIHKFI-LTDIEHKKLFYDSKTILQEVVQGNYKESLHYE 177 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + GPDHD +F+V I G +K+ Sbjct: 178 LISEEGPDHDKQFSVEARIGDKVIGSGTGHTKK 210 >gi|90101636|sp|Q4KHT1|RNC_PSEF5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 229 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 118/222 (53%), Gaps = 6/222 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+++GY+F ++ L+ ALTH S + + ERLEFLGD IL + LF F A Sbjct: 6 SRLERQLGYSFKDQELMLLALTHRSFAG---RNNERLEFLGDAILNFVAGEALFERFPQA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS LV ET + +AR DL ++R+ S K SI AD +E+LI A+ Sbjct: 63 REGQLSRLRARLVKGETLAVLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G+E A V + +L +D KT LQE+ ++ P Y+V G Sbjct: 123 YLDAGMETARDRVLSWLASEFESLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEP 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 H F V E++ L ++G S+R AEQVAAA L G+ Sbjct: 183 HCRTFFVECEVTLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224 >gi|295109853|emb|CBL23806.1| RNAse III [Ruminococcus obeum A2-162] Length = 223 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/187 (39%), Positives = 101/187 (54%), Gaps = 7/187 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ IGY F N+ LL++ALTHSS ++ + ERLEFLGD +L L+ S L+ F Sbjct: 4 LEQIIGYTFQNKKLLKQALTHSSYANEKKLGKLGCNERLEFLGDAVLELISSDFLYRKFS 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ + SLV + + ARE L F+ + SI +D E+L+ Sbjct: 64 QIPEGELTKKRASLVCEPSLAYCAREFGLPEFLLLGKGENMTGGRNRDSIVSDATEALLG 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP-EYKVTFRSGP 183 A+YLDGG A FV + ++ + D+KT LQE K G+ P EY +T GP Sbjct: 124 AIYLDGGFSNAKKFVLNFI-LNDIEHKQLFYDSKTILQELVQEK-GLQPIEYVLTGEDGP 181 Query: 184 DHDPRFT 190 DHD RFT Sbjct: 182 DHDKRFT 188 >gi|270265300|ref|ZP_06193561.1| ribonuclease 3 [Serratia odorifera 4Rx13] gi|270040704|gb|EFA13807.1| ribonuclease 3 [Serratia odorifera 4Rx13] Length = 226 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 122/225 (54%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQNVERLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL+ P G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 222 >gi|50122200|ref|YP_051367.1| ribonuclease III [Pectobacterium atrosepticum SCRI1043] gi|81644286|sp|Q6D219|RNC_ERWCT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|49612726|emb|CAG76176.1| ribonuclease III [Pectobacterium atrosepticum SCRI1043] Length = 226 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQRKLGYTFQQYELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 DRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDILNIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SG + + G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRKAEQAAAEQALKK 222 >gi|15595967|ref|NP_249461.1| ribonuclease III [Pseudomonas aeruginosa PAO1] gi|107100231|ref|ZP_01364149.1| hypothetical protein PaerPA_01001254 [Pseudomonas aeruginosa PACS2] gi|116048686|ref|YP_792514.1| ribonuclease III [Pseudomonas aeruginosa UCBPP-PA14] gi|218893287|ref|YP_002442156.1| ribonuclease III [Pseudomonas aeruginosa LESB58] gi|254239132|ref|ZP_04932455.1| ribonuclease III [Pseudomonas aeruginosa C3719] gi|254245025|ref|ZP_04938347.1| ribonuclease III [Pseudomonas aeruginosa 2192] gi|296390880|ref|ZP_06880355.1| ribonuclease III [Pseudomonas aeruginosa PAb1] gi|313105592|ref|ZP_07791858.1| ribonuclease III [Pseudomonas aeruginosa 39016] gi|7531195|sp|Q9XCX9|RNC_PSEAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122257792|sp|Q02HS2|RNC_PSEAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735378|sp|B7UYX2|RNC_PSEA8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|5114183|gb|AAD40229.1|AF123492_1 RNase III [Pseudomonas aeruginosa] gi|9946659|gb|AAG04159.1|AE004512_2 ribonuclease III [Pseudomonas aeruginosa PAO1] gi|115583907|gb|ABJ09922.1| ribonuclease III [Pseudomonas aeruginosa UCBPP-PA14] gi|126171063|gb|EAZ56574.1| ribonuclease III [Pseudomonas aeruginosa C3719] gi|126198403|gb|EAZ62466.1| ribonuclease III [Pseudomonas aeruginosa 2192] gi|218773515|emb|CAW29327.1| ribonuclease III [Pseudomonas aeruginosa LESB58] gi|310878360|gb|EFQ36954.1| ribonuclease III [Pseudomonas aeruginosa 39016] Length = 229 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 119/220 (54%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++GY F +R L+ ALTH S + + ERLEFLGD IL +I LF+HF A+E Sbjct: 8 LERKLGYTFKDRDLMVLALTHRSYA---GRNNERLEFLGDAILNFVIGEALFHHFPQARE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS LV ET + +AR ++ ++R+ S K SI AD +E+LI A+YL Sbjct: 65 GQLSRLRARLVKGETLALLARGFEVGDYLRLGSGELKSGGFRRESILADAMEALIGAIYL 124 Query: 129 DGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G++ A + + + R L +D KT LQE+ ++ P Y+V G H Sbjct: 125 DTGMDSARERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRGCDLPRYEVVDIQGEPHC 184 Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225 F V E++ L+ G S+R AEQVAAA L G+ Sbjct: 185 RTFFVDCEVALLSDKTHGHGGSRRIAEQVAAAAALVALGV 224 >gi|154505348|ref|ZP_02042086.1| hypothetical protein RUMGNA_02863 [Ruminococcus gnavus ATCC 29149] gi|153794391|gb|EDN76811.1| hypothetical protein RUMGNA_02863 [Ruminococcus gnavus ATCC 29149] Length = 252 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/208 (37%), Positives = 111/208 (53%), Gaps = 5/208 (2%) Query: 13 IGYAFANRSLLEKALTHSSISH-SYQESY---ERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY F + SLLE+A+ HSS ++ + E Y ERLEFLGD +L L+ S LF E Sbjct: 35 IGYEFQDFSLLEQAMMHSSYTNEKHLEKYHCNERLEFLGDAVLELVSSEFLFLESPKVSE 94 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ S+V + + ARE++L S++ + S+ +D +E+LI A+YL Sbjct: 95 GKLTKTRASMVCEPSLAFCAREIELGSYLLLGKGEEATGGRQRPSVTSDAMEALIGAIYL 154 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG A F+ ++ L++ K D+KT LQE A Y + GPDH+ Sbjct: 155 DGGFTNAKEFIHRFI-LTDLENKKLFYDSKTILQEIVQADMEEGISYHLIKEEGPDHNKS 213 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAA 216 FTV V+I G +K+AAEQ AA Sbjct: 214 FTVEVKIGETVYGTGSGRTKKAAEQEAA 241 >gi|330957807|gb|EGH58067.1| ribonuclease III [Pseudomonas syringae pv. maculicola str. ES4326] Length = 229 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 117/222 (52%), Gaps = 6/222 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF F A Sbjct: 6 SRLERQLGYTFKDQELMVLALTHRSFAG---RNNERLEFLGDAILNFVAGEALFERFPQA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS LV ET + +AR DL ++R+ S K SI AD +E+LI A+ Sbjct: 63 REGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G+E A V + +L +D KT LQE+ ++ P Y+V G Sbjct: 123 YLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVDIQGEP 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 H F V EI+ L ++G S+R AEQVAAA L G+ Sbjct: 183 HCRTFFVECEINLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224 >gi|300087535|ref|YP_003758057.1| ribonuclease III [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527268|gb|ADJ25736.1| ribonuclease III [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 234 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 119/230 (51%), Gaps = 22/230 (9%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS---------ISHSYQESYERLEFLGDRILGLLIS 56 Y ++ R+G FAN ++LE AL HSS ISH+ ERLEFLGD +LG+ I+ Sbjct: 4 YEEIQARLGVRFANPAILETALIHSSFVNETADQSISHN-----ERLEFLGDAVLGMWIA 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F EG L+ + LV ET + +A EL L + + R ++ S A Sbjct: 59 ERLFRDFPDEPEGTLTRYRSLLVRRETLAFIADELQLGEALYLG---RGEIRSGGRRKPA 115 Query: 117 DV---VESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171 ++ +E++IAA+YLD G + G +D+ +++ L D+K+ LQE ++ Sbjct: 116 NLSRALEAVIAAVYLDRGYDTTGQVIDRLFERHFADLPGMAAAADSKSHLQEIVQGRYHT 175 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 PEY++ +GPD+ FT V ++G G K+ AE AA E L+ Sbjct: 176 PPEYRIIEENGPDNAQSFTAEVIVNGQVRGTGRGSRKKDAETAAAQEALE 225 >gi|225847889|ref|YP_002728052.1| ribonuclease III [Sulfurihydrogenibium azorense Az-Fu1] gi|225644365|gb|ACN99415.1| ribonuclease III [Sulfurihydrogenibium azorense Az-Fu1] Length = 238 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 9/226 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61 R LEK + Y F ++SLL A+TH S Y + YE LEFLGD +L L++S +L Sbjct: 11 RVENLEKLLDYNFKDKSLLLAAITHRSFVAEYPVKLKDYEVLEFLGDSVLSLIVSEILIK 70 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS +++VS S++A+ L+L F+ +S + S S+ DV E+ Sbjct: 71 QFPDAREGDLSQLRSAIVSEAYLSKLAKLLNLGQFVLISKGEKSQKGSERDSLLCDVFEA 130 Query: 122 LIAALYLDG--GIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + A+Y+D I+ +K +K++ L K+ RD K+ LQ +G P+Y+ Sbjct: 131 VFGAIYIDTDYNIDTPRNVFNKLFKEKLLQDIKTENIPRDYKSLLQIETQKLYGKIPKYR 190 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + GP+HD F V EI + K A Q AA E ++ Sbjct: 191 LIHSEGPEHDKVFVVECEIEKIKTTGKGKSKKEAETQ-AAKEAFRK 235 >gi|291613749|ref|YP_003523906.1| ribonuclease III [Sideroxydans lithotrophicus ES-1] gi|291583861|gb|ADE11519.1| ribonuclease III [Sideroxydans lithotrophicus ES-1] Length = 224 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 119/219 (54%), Gaps = 12/219 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++++ L KR+GY F LL++ALTH S S ++ E RLEFLGD +L I+ L++ + Sbjct: 1 MKHAALCKRLGYQFLQPQLLQRALTHRSYSAAHNE---RLEFLGDSVLNCAIAKYLYDTY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS ++LV+ +T + +A++L+L + + RK SI AD +E+L Sbjct: 58 PDLPEGDLSRLRSNLVNQQTLAILAQQLNLGEQLLLGEGERKSAGFRRPSILADALEALF 117 Query: 124 AALYLDGGIEVA-----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 A+ LD G A G +V + Q LK+ +DAKT LQE ++ P+Y V Sbjct: 118 GAVLLDAGFMAAEKVVLGLYV-PFIVQTDLKT--LGKDAKTLLQEHLQSRKLALPQYHVA 174 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216 G H F V EI+ L +QG S+R AEQ+AA Sbjct: 175 EIKGEAHAQTFVVTCEIAQLGLVSQGEGTSRRIAEQIAA 213 >gi|330964520|gb|EGH64780.1| ribonuclease III [Pseudomonas syringae pv. actinidiae str. M302091] Length = 227 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/217 (38%), Positives = 115/217 (52%), Gaps = 6/217 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF F A Sbjct: 6 SRLERQLGYTFKDQELMILALTHRSFAG---RNNERLEFLGDAILNFVAGEALFERFPQA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS LV ET + +AR DL ++R+ S K SI AD +E+LI A+ Sbjct: 63 REGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G+E A V + +L +D KT LQE+ ++ P Y+V G Sbjct: 123 YLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVDIQGEP 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220 H F V EI+ L ++G S+R AEQVAAA L Sbjct: 183 HCRTFFVECEINLLNEKSRGQGVSRRIAEQVAAAAAL 219 >gi|120609884|ref|YP_969562.1| ribonuclease III [Acidovorax citrulli AAC00-1] gi|120588348|gb|ABM31788.1| RNAse III [Acidovorax citrulli AAC00-1] Length = 228 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 112/217 (51%), Gaps = 8/217 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + S L+ R+ + F++ SLL++A TH S S + E RLEFLGD +L L +S+LL+ Sbjct: 1 MVSPSLSALQDRLQHVFSDPSLLQRATTHRSFSADHNE---RLEFLGDSVLNLAVSSLLY 57 Query: 61 NHFDSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 EG+LS VR N LV E +A L L +R+ K SI AD + Sbjct: 58 QRLRDLPEGDLSRVRAN-LVRQEALHSLALGLQLPQVLRLGEGETKSGGKQRPSILADAL 116 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+LI A+YLD G + A V + ++ + + +DAKT LQEW + P+Y+V Sbjct: 117 EALIGAVYLDAGYQCAEALVHRLYQDVEINPRMPAAEKDAKTALQEWLQGRKMKLPQYRV 176 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 G H F V +I L + G+ S+RA EQ Sbjct: 177 VATVGAAHRQTFDVECDIPELGLTERGIGGSRRAGEQ 213 >gi|254519218|ref|ZP_05131274.1| ribonuclease III [Clostridium sp. 7_2_43FAA] gi|226912967|gb|EEH98168.1| ribonuclease III [Clostridium sp. 7_2_43FAA] Length = 242 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 115/225 (51%), Gaps = 4/225 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTL 58 M+ +E IG F LL+ ALTHSS + H QE ER EFLGD IL L I+ Sbjct: 11 MAKFNIKEVEDSIGLTFNEPKLLKTALTHSSYANQHKDQEYNERFEFLGDSILQLCITEY 70 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF ++ + EGEL+ + +V + ++ ++L+L FIR+S SI AD Sbjct: 71 LFLNYKNKSEGELTKIRSLIVCENSLYEIGKKLNLGYFIRISRGEELTGGRERVSIIADA 130 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYK 176 VE+L+A +YLD G+E ++ ++K+ K + D KT+LQE V+ Y+ Sbjct: 131 VEALLAGIYLDKGLEFVKDYIIGHFKEIIDKAINNDIVLDYKTKLQEEMQKSGEVSIIYE 190 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + GP H +F V I +G SK+ +EQ AA E L+ Sbjct: 191 LLKYEGPPHRRKFFTSVLIEDRELGKGEGYSKKESEQNAAKEALR 235 >gi|49081844|gb|AAT50322.1| PA0770 [synthetic construct] Length = 230 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 119/220 (54%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++GY F +R L+ ALTH S + + ERLEFLGD IL +I LF+HF A+E Sbjct: 8 LERKLGYTFKDRDLMVLALTHRSYA---GRNNERLEFLGDAILNFVIGEALFHHFPQARE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS LV ET + +AR ++ ++R+ S K SI AD +E+LI A+YL Sbjct: 65 GQLSRLRARLVKGETLALLARGFEVGDYLRLGSGELKSGGFRRESILADAMEALIGAIYL 124 Query: 129 DGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G++ A + + + R L +D KT LQE+ ++ P Y+V G H Sbjct: 125 DTGMDSARERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRGCDLPRYEVVDIQGEPHC 184 Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225 F V E++ L+ G S+R AEQVAAA L G+ Sbjct: 185 RTFFVDCEVALLSDKTHGHGGSRRIAEQVAAAAALVALGV 224 >gi|240146505|ref|ZP_04745106.1| ribonuclease III [Roseburia intestinalis L1-82] gi|257201361|gb|EEU99645.1| ribonuclease III [Roseburia intestinalis L1-82] gi|291535139|emb|CBL08251.1| RNAse III [Roseburia intestinalis M50/1] Length = 228 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 111/213 (52%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQES-YERLEFLGDRILGLLIS 56 MS L+ L+ RIGY F LL +ALTHSS + H + S ERLEFLGD +L ++ S Sbjct: 1 MSKLQ--ELQNRIGYTFEKEGLLRQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ ++ EG+L+ S+V T + RE+DL ++ + + SI + Sbjct: 59 DFLYRNYPDLPEGDLTKLRASIVCEPTLALCTREMDLGDYLLLGKGENQTGGRKRKSILS 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +ES+I A+YLDGG E A F+ K+ ++ K D+KT LQE + + Y+ Sbjct: 119 DALESVIGAIYLDGGFEPAKKFIHKFI-LTDIEHKKLFYDSKTILQEVVQGNYKESLHYE 177 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + GPDHD +F+V I G +K+ Sbjct: 178 LISEEGPDHDKQFSVEARIGDKVIGAGTGHTKK 210 >gi|229815433|ref|ZP_04445765.1| hypothetical protein COLINT_02481 [Collinsella intestinalis DSM 13280] gi|229808966|gb|EEP44736.1| hypothetical protein COLINT_02481 [Collinsella intestinalis DSM 13280] Length = 241 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/217 (37%), Positives = 112/217 (51%), Gaps = 3/217 (1%) Query: 14 GYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 G+ F + LL A+TH S SYERLEFLGD ILG +++ LF + + EG+L Sbjct: 15 GHEFTDVQLLRSAITHPSAVEGEPVSASYERLEFLGDSILGSIVALSLFKTYGAFDEGKL 74 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + SLVS T S+V EL + I + + + M S +V E+LI ALYLDGG Sbjct: 75 TRLKVSLVSGATLSEVGLELGIDKIIILGASEQGTGARGMHSALENVYEALIGALYLDGG 134 Query: 132 IEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 +VA F+ + K A + + + K+ LQE + P YKV GP H P FT Sbjct: 135 WDVAEAFITRTLKPHLADERAEHPSNPKSYLQECVQSDRMDPPAYKVIGEDGPAHQPTFT 194 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 V + G+ +G SK+ AE AA + L+R G T Sbjct: 195 AVALVDGIRRGRGTGSSKKEAEAAAALDALERMGYTT 231 >gi|28871359|ref|NP_793978.1| ribonuclease III [Pseudomonas syringae pv. tomato str. DC3000] gi|213971119|ref|ZP_03399238.1| ribonuclease III [Pseudomonas syringae pv. tomato T1] gi|237798713|ref|ZP_04587174.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806146|ref|ZP_04592850.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6] gi|301381864|ref|ZP_07230282.1| ribonuclease III [Pseudomonas syringae pv. tomato Max13] gi|302063246|ref|ZP_07254787.1| ribonuclease III [Pseudomonas syringae pv. tomato K40] gi|302132832|ref|ZP_07258822.1| ribonuclease III [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999381|sp|Q87XG1|RNC_PSESM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28854610|gb|AAO57673.1| ribonuclease III [Pseudomonas syringae pv. tomato str. DC3000] gi|213924108|gb|EEB57684.1| ribonuclease III [Pseudomonas syringae pv. tomato T1] gi|331015601|gb|EGH95657.1| ribonuclease III [Pseudomonas syringae pv. lachrymans str. M302278PT] gi|331021566|gb|EGI01623.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027259|gb|EGI07314.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6] Length = 229 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 117/222 (52%), Gaps = 6/222 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF F A Sbjct: 6 SRLERQLGYTFKDQELMILALTHRSFAG---RNNERLEFLGDAILNFVAGEALFERFPQA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS LV ET + +AR DL ++R+ S K SI AD +E+LI A+ Sbjct: 63 REGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G+E A V + +L +D KT LQE+ ++ P Y+V G Sbjct: 123 YLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVDIQGEP 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 H F V EI+ L ++G S+R AEQVAAA L G+ Sbjct: 183 HCRTFFVECEINLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224 >gi|71737399|ref|YP_276084.1| ribonuclease III [Pseudomonas syringae pv. phaseolicola 1448A] gi|90101635|sp|Q48EV3|RNC_PSE14 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71557952|gb|AAZ37163.1| ribonuclease III [Pseudomonas syringae pv. phaseolicola 1448A] Length = 229 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 117/222 (52%), Gaps = 6/222 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF F A Sbjct: 6 SRLERQLGYTFKDQELMVLALTHRSFAGR---NNERLEFLGDAILNFVAGEALFERFPQA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS LV ET + +AR DL ++R+ S K SI AD +E+LI A+ Sbjct: 63 REGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G+E A V + +L +D KT LQE+ ++ P Y+V G Sbjct: 123 YLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIHGEP 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 H F V EI+ L ++G S+R AEQVAAA L G+ Sbjct: 183 HCRTFFVECEINLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224 >gi|261820519|ref|YP_003258625.1| ribonuclease III [Pectobacterium wasabiae WPP163] gi|261604532|gb|ACX87018.1| ribonuclease III [Pectobacterium wasabiae WPP163] Length = 226 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQRKLGYTFQQYELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDILNIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SG + + G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRKAEQAAAEQALKK 222 >gi|284032688|ref|YP_003382619.1| ribonuclease III [Kribbella flavida DSM 17836] gi|283811981|gb|ADB33820.1| ribonuclease III [Kribbella flavida DSM 17836] Length = 249 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 82/216 (37%), Positives = 113/216 (52%), Gaps = 8/216 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 Y+ L +R+G + A+ LLE A TH S ++ + ERLEFLGD +LG++++ LF + Sbjct: 16 YAELNQRLGVSLADE-LLEHAFTHRSFAYENGGLPTNERLEFLGDSVLGVIVTESLFRNH 74 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ ++V+ + VAR+L L ++R+ +SI AD VE+LI Sbjct: 75 PDLSEGRLAKLRAAVVNMRALAGVARDLKLGKYLRLGRGEEATGGRDKSSILADCVEALI 134 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGV-TPEYKVTFR 180 A+YLD G EVAG V + S + D KT LQE A+ GV PEY V Sbjct: 135 GAVYLDRGFEVAGRVVHTLFDDLMESSARLGAGLDWKTSLQELV-AQLGVGVPEY-VIAE 192 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 SGPDH F V I G+ SK+ AEQ AA Sbjct: 193 SGPDHAKTFEARVRIGSDTYGHGIGRSKKEAEQQAA 228 >gi|307610570|emb|CBX00158.1| hypothetical protein LPW_19031 [Legionella pneumophila 130b] Length = 206 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 112/204 (54%), Gaps = 8/204 (3%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L++ALTH S ++YER EFLGD IL +I+ LFN F EG+LS + LV E Sbjct: 4 LKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFNRFPLHSEGQLSRLRSFLVKGE 60 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 +++ARE+ L ++ + + TSI AD +E+++AA+YLDGG+ A + Sbjct: 61 MLAEIAREIGLGDYLFLGQGELRSGGFRRTSILADALEAILAAIYLDGGMTAAKQIILML 120 Query: 143 WKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 + R L +DAKT+LQE+ A PEY +T G +H F V I G++ Sbjct: 121 YSSR-LDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKVEGDEHAQIFHVTCTIEGVS 179 Query: 200 P-AQGMDCSKRAAEQVAAAEVLKR 222 A G ++R AEQ+AA +L++ Sbjct: 180 QVAYGTGPNRRKAEQLAAKAMLEQ 203 >gi|167035367|ref|YP_001670598.1| ribonuclease III [Pseudomonas putida GB-1] gi|189043333|sp|B0KV27|RNC_PSEPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|166861855|gb|ABZ00263.1| Ribonuclease III [Pseudomonas putida GB-1] Length = 229 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 116/223 (52%), Gaps = 12/223 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++GY F N+ + ALTH S + + ERLEFLGD IL + LF F A+E Sbjct: 8 LERKLGYTFKNQDQMLLALTHRSYAG---RNNERLEFLGDAILNFVAGEALFERFPQARE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS LV ET +++AR DL ++R+ S K SI AD +E+LI A+YL Sbjct: 65 GQLSRLRARLVKGETLARLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAIYL 124 Query: 129 DGGIEVAGTFV-----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 D ++ A V D++ + + K D KT LQE+ ++ P Y+V G Sbjct: 125 DADMDTARERVLAWLADEFEGLTLVDTNK---DPKTRLQEFLQSRSCELPRYEVVDIQGE 181 Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 H F V E+ L ++G S+R AEQVAAA L G+ Sbjct: 182 PHCRTFFVECEVVLLNNKSRGQGVSRRIAEQVAAASALIALGV 224 >gi|78046932|ref|YP_363107.1| ribonuclease III [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|90101655|sp|Q3BVV6|RNC_XANC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|78035362|emb|CAJ23007.1| ribonuclease III [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 226 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 110/211 (52%), Gaps = 6/211 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ +LL +AL H S + E RLEFLGD I+ LLI+ L+ + A EG L+ Sbjct: 12 IGHAFADPALLARALRHRSAGTPHNE---RLEFLGDGIVNLLIAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFH 188 Query: 191 VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220 V + +A A+G S+R AEQ AA V+ Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVI 219 >gi|21242078|ref|NP_641660.1| ribonuclease III [Xanthomonas axonopodis pv. citri str. 306] gi|24212270|sp|Q8PMV0|RNC_XANAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|21107485|gb|AAM36196.1| ribonuclease III [Xanthomonas axonopodis pv. citri str. 306] Length = 226 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 111/211 (52%), Gaps = 6/211 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ +LL +AL H S + E RLEFLGD I+ LLI+ L++ + A EG L+ Sbjct: 12 IGHAFADPALLAQALRHRSAGTPHNE---RLEFLGDGIVNLLIAEALYHRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFH 188 Query: 191 VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220 V + +A A+G S+R AEQ AA V+ Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVI 219 >gi|159898112|ref|YP_001544359.1| ribonuclease III [Herpetosiphon aurantiacus ATCC 23779] gi|159891151|gb|ABX04231.1| Ribonuclease III [Herpetosiphon aurantiacus ATCC 23779] Length = 234 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 102/191 (53%), Gaps = 5/191 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNH 62 + L+ +GY F + + L A+ H S H + ES ERLEFLGD +L + + LF+ Sbjct: 4 NKLQAELGYTFNDLNFLRAAMLHRSYVHEHPEAGSESNERLEFLGDALLNFICGSFLFHE 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+L+ LV T + +AR +L S++++S + ++ AD E+L Sbjct: 64 FPELGEGDLTKTRAMLVQTRTLAGLARRFNLGSYVQISRGEERAKARERDNLLADAFEAL 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +AA+ LDGG E A FV K SG +D KT+LQ++ + +TP Y+ +G Sbjct: 124 LAAIALDGGWEAARNFVLPLLKS-VKASGVQNQDYKTDLQQYVQGRINLTPSYREVNVTG 182 Query: 183 PDHDPRFTVVV 193 PDH+ +T+ V Sbjct: 183 PDHERTWTIEV 193 >gi|322385039|ref|ZP_08058689.1| ribonuclease III [Streptococcus cristatus ATCC 51100] gi|321270949|gb|EFX53859.1| ribonuclease III [Streptococcus cristatus ATCC 51100] Length = 229 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + LE + G F + SLLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MEQLKDALLE-QFGLVFEDSSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD +E F+ + + +++G F + D KT+LQE V Sbjct: 120 DLFEAFLGALLLDKDVETVKAFIYQVMIPK-VEAGDFEQVTDYKTKLQELLQVNGDVEIV 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+VT +GP H F V V I+G QG SK+ AEQ AA + ++E Sbjct: 179 YQVTDETGPAHAKNFAVAVLINGQKAGQGQGRSKKLAEQEAAKDAFEKE 227 >gi|226940389|ref|YP_002795463.1| ribonuclease III [Laribacter hongkongensis HLHK9] gi|226715316|gb|ACO74454.1| Rnc [Laribacter hongkongensis HLHK9] Length = 238 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/216 (36%), Positives = 116/216 (53%), Gaps = 6/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + IG+ F + +LL++ALTH S Q + ER EF+GD IL I+ +LF+ F E Sbjct: 10 LMQHIGHLFTSPALLKEALTHRSYG---QPNNERFEFVGDGILNYTIARMLFDAFPELSE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV+ T +++AREL L + + RK SI AD +E++ AA+ L Sbjct: 67 GQLSRLRANLVNQATLAEIARELTLGDCLFLGDGERKSGGHDRPSILADAMEAIFAAVCL 126 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D VA V + + R + + +DAKT LQE A+ P Y++ +SG H Sbjct: 127 DADFAVAENVVRRLYAARVAGIDLNRQAKDAKTRLQEMLQARRLPLPAYRILNQSGDAHL 186 Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221 +F V +I L A G S+RAAEQ+AA ++ Sbjct: 187 SQFEVACDIPQLGLATCGEGSSRRAAEQLAAERAIE 222 >gi|307329834|ref|ZP_07608989.1| ribonuclease III [Streptomyces violaceusniger Tu 4113] gi|306884563|gb|EFN15594.1| ribonuclease III [Streptomyces violaceusniger Tu 4113] Length = 278 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/212 (34%), Positives = 113/212 (53%), Gaps = 6/212 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 19 TASSHTILEGRLGYQLES-ALLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R LDL +FIR+ SI AD + Sbjct: 78 YRIHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTL 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS D KT LQE + PEY V Sbjct: 138 EAVIGAVYLDQGLDAAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLV 197 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + +GPDH+ FT + G+A G SK+ Sbjct: 198 S-ETGPDHEKTFTAAARVGGVAYGTGTGRSKK 228 >gi|255321781|ref|ZP_05362936.1| ribonuclease III [Campylobacter showae RM3277] gi|255301261|gb|EET80523.1| ribonuclease III [Campylobacter showae RM3277] Length = 222 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/216 (33%), Positives = 112/216 (51%), Gaps = 6/216 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE+++GY F + LL+ ALTH S+ ERLEFLGD ++ L+I LF+ F Sbjct: 3 NLEEKLGYKFKDEKLLKTALTHKSVKGGANN--ERLEFLGDAVMDLVIGDYLFHKFSRLS 60 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS +LV+ ++ +++A+ L+L I +S + SI +D E+L+ A+Y Sbjct: 61 EGDLSKLRAALVNEKSFAELAKYLNLGQLINISPAEEHNGGRAKASILSDAFEALMGAIY 120 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 L+ G + K + +R F R D KT LQE A+F P+Y + GPD Sbjct: 121 LESGFDAVRAASLKAF-ERCYPDINFDRMVKDYKTALQELTQARFAQIPKYVLVGSKGPD 179 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H F + + ++ ++ SK+ AEQ AA L Sbjct: 180 HKKEFEIALMLNEREISRAAGKSKKEAEQKAAKTAL 215 >gi|163856074|ref|YP_001630372.1| ribonuclease III [Bordetella petrii DSM 12804] gi|229564350|sp|A9IIJ2|RNC_BORPD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|163259802|emb|CAP42103.1| Ribonuclease III [Bordetella petrii] Length = 252 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 14/220 (6%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +TLE R+ + F N +LLE+ALTH S HS + + ERLEFLGD +L +++ +LF F Sbjct: 1 MSLATLETRLDHRFGNAALLEQALTHRS--HSARHN-ERLEFLGDSVLNFVVAAMLFERF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + + + + L+L+ ++R+ K SI AD VE++ Sbjct: 58 PKLDEGDLSRLRANLVKQASLADIGQRLELSQYLRLGEGELKSGGFRRPSILADAVEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A +LDGG + A + + ++ ++ +DAKT LQE+ + P Y V Sbjct: 118 GAAFLDGGFDTARKVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPLYTVVATH 177 Query: 182 GPDHDPRFTV-----VVEISGLAPAQGMDCSKRAAEQVAA 216 G H +F V +EI +AP S+RAAEQ AA Sbjct: 178 GAAHSQQFEVECAIPALEIKVVAPG----ASRRAAEQSAA 213 >gi|91789485|ref|YP_550437.1| ribonuclease III [Polaromonas sp. JS666] gi|91698710|gb|ABE45539.1| RNAse III [Polaromonas sp. JS666] Length = 233 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 112/215 (52%), Gaps = 6/215 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+KR+ + F+N LL +ALTH S S + E R+EFLGD +L L ++ LL+ E Sbjct: 14 LQKRLQHEFSNPKLLAQALTHRSFSADHNE---RIEFLGDSVLNLAVAGLLYEQLSELPE 70 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV +T ++A L L +R+ + SI AD +E++I A+YL Sbjct: 71 GDLSRVRANLVKQDTLHKLAVTLGLPEMLRLGEGEARSGGQKRPSILADALEAVIGAVYL 130 Query: 129 DGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G + A V + ++ + +D KTELQEW + P Y+V G H Sbjct: 131 DAGFDKADQLVRRLFRNVEINPQMQAIGKDPKTELQEWLQGRKMNLPIYRVVGTMGAAHK 190 Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220 F V EI+ A+ G+ S+RA EQ AAA +L Sbjct: 191 QTFDVECEITEYGRAERGIGGSRRAGEQAAAAAML 225 >gi|206901475|ref|YP_002250663.1| ribonuclease III [Dictyoglomus thermophilum H-6-12] gi|206740578|gb|ACI19636.1| ribonuclease III [Dictyoglomus thermophilum H-6-12] Length = 237 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 117/219 (53%), Gaps = 5/219 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHF 63 S ++++ G +F N++L+ +ALTH S H ++ +RLEFLGD +L ++I+ +LF + Sbjct: 18 SKVKEKTGISFDNKNLIIEALTHPSFKHENPHFEYDNQRLEFLGDAVLNMIITEILFQRY 77 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EG L+ + +V ET + A+ L+L I + K SI +D+ E+ I Sbjct: 78 KEASEGILTQKRIYMVKEETLYKKAKSLNLGDLILLGKGEEKQGGREKISILSDLFEAFI 137 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ALYLD G E FV++ +++ ++S + D K LQ K G P Y VT GP Sbjct: 138 GALYLDKGYEFTKNFVERIFREE-IESVEMEIDWKNLLQSQL-MKEGKKPSYIVTREEGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +H+ F V + I A+G +KR AE AA L++ Sbjct: 196 EHNKIFYVELWIDNNKIAEGEGKTKREAEIKAAKIALEK 234 >gi|238923872|ref|YP_002937388.1| ribonuclease III [Eubacterium rectale ATCC 33656] gi|238875547|gb|ACR75254.1| ribonuclease III [Eubacterium rectale ATCC 33656] Length = 237 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 113/207 (54%), Gaps = 6/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS---HSYQES-YERLEFLGDRILGLLISTLLFNH 62 + + +IGY F NR LLE+ALTHSS + H + S ERLEFLGD +L ++ S LF + Sbjct: 15 NEFQSKIGYTFKNRHLLEQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSEFLFIN 74 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EGEL+ S+V T + + LDL ++R+ SI +D +E++ Sbjct: 75 YPQKPEGELTKLRASIVCEPTLALCTKPLDLGKYLRLGRGEDHTGGRKRKSILSDALEAV 134 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I A+YLDGG A FV ++ +++ + D+KT LQE + Y++ SG Sbjct: 135 IGAIYLDGGFTNAKEFVLRFI-MTDIENKQLFYDSKTILQELIQGRHEQLS-YELIDESG 192 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDHD +FTV V + G ++G +K+ Sbjct: 193 PDHDKQFTVAVLVDGERVSEGEGHTKK 219 >gi|2500553|sp|Q53844|RNC_SPICI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|1143009|gb|AAA84999.1| orfb [Spiroplasma citri] gi|110005386|emb|CAK99709.1| putative ribonuclease III protein [Spiroplasma citri] Length = 248 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 111/204 (54%), Gaps = 6/204 (2%) Query: 25 KALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +ALTH+S + H+ +Y+R+EFLGD IL IS LF F EGE++ + +V Sbjct: 34 EALTHNSYANEHNLSYTYQRMEFLGDAILAKEISLYLFLSFPDKNEGEITNLRSKIVREG 93 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 T +++ R ++ A F+ + K I AD+ ES+IAALYLD G +V TF++ Sbjct: 94 TLAELVRRMNWAPFLLLGKGEIKTKGYEKNRILADIYESMIAALYLDLGEDVVRTFINNT 153 Query: 143 WKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGL 198 + G F RD KTELQE+ A T EYK+ S P R +TVV EI G+ Sbjct: 154 LIRMVSNPGFFDKIRDYKTELQEFLQAGDARTLEYKLIKESQPLEGNRVLYTVVAEIGGI 213 Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222 +G + + AEQ+AA + L++ Sbjct: 214 RYGEGCGYTHKEAEQLAARDALQK 237 >gi|325926994|ref|ZP_08188269.1| RNAse III [Xanthomonas perforans 91-118] gi|325928522|ref|ZP_08189710.1| RNAse III [Xanthomonas perforans 91-118] gi|325541061|gb|EGD12615.1| RNAse III [Xanthomonas perforans 91-118] gi|325542653|gb|EGD14120.1| RNAse III [Xanthomonas perforans 91-118] Length = 226 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 110/211 (52%), Gaps = 6/211 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ +LL +AL H S + E RLEFLGD I+ LLI+ L+ + A EG L+ Sbjct: 12 IGHAFADPALLAQALRHRSAGTPHNE---RLEFLGDGIVNLLIAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFH 188 Query: 191 VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220 V + +A A+G S+R AEQ AA V+ Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVI 219 >gi|26988166|ref|NP_743591.1| ribonuclease III [Pseudomonas putida KT2440] gi|148549494|ref|YP_001269596.1| ribonuclease III [Pseudomonas putida F1] gi|37999409|sp|Q88MY5|RNC_PSEPK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043332|sp|A5W8F2|RNC_PSEP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|24982900|gb|AAN67055.1|AE016334_4 ribonuclease III [Pseudomonas putida KT2440] gi|148513552|gb|ABQ80412.1| RNAse III [Pseudomonas putida F1] gi|313500339|gb|ADR61705.1| Rnc [Pseudomonas putida BIRD-1] Length = 229 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 115/223 (51%), Gaps = 12/223 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++GY F N+ + ALTH S + + ERLEFLGD IL + LF F A+E Sbjct: 8 LERKLGYTFKNQDQMLLALTHRSYAG---RNNERLEFLGDAILNFVAGEALFERFPQARE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS LV ET +++AR DL ++R+ S K SI AD +E+LI A+YL Sbjct: 65 GQLSRLRARLVKGETLARLARGFDLGDYLRLGSGELKSGGFRRESILADALEALIGAIYL 124 Query: 129 DGGIEVA-----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 D ++ A D++ + + K D KT LQE+ ++ P Y+V G Sbjct: 125 DADMDTARERILAWLADEFEGLTLVDTNK---DPKTRLQEFLQSRSCELPRYEVVDIQGE 181 Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 H F V E+ L ++G S+R AEQVAAA L G+ Sbjct: 182 PHCRTFFVECEVVLLNNKSRGQGVSRRIAEQVAAASALIALGV 224 >gi|325696125|gb|EGD38016.1| ribonuclease III [Streptococcus sanguinis SK160] Length = 232 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + LE+ FA+ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENLKKALLEQ-FDLVFADETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E +F+ + + +++G F R D KT+LQE V Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIA 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V +GP H F V V I+G QG SK+ AEQ AA ++E Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227 >gi|291524528|emb|CBK90115.1| RNAse III [Eubacterium rectale DSM 17629] gi|291527954|emb|CBK93540.1| RNAse III [Eubacterium rectale M104/1] Length = 227 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 113/207 (54%), Gaps = 6/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS---HSYQES-YERLEFLGDRILGLLISTLLFNH 62 + + +IGY F NR LLE+ALTHSS + H + S ERLEFLGD +L ++ S LF + Sbjct: 5 NEFQSKIGYTFKNRHLLEQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSEFLFIN 64 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EGEL+ S+V T + + LDL ++R+ SI +D +E++ Sbjct: 65 YPQKPEGELTKLRASIVCEPTLALCTKPLDLGKYLRLGRGEDHTGGRKRKSILSDALEAV 124 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I A+YLDGG A FV ++ +++ + D+KT LQE + Y++ SG Sbjct: 125 IGAIYLDGGFTNAKEFVLRFI-MTDIENKQLFYDSKTILQELIQGRHEQLS-YELIDESG 182 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDHD +FTV V + G ++G +K+ Sbjct: 183 PDHDKQFTVAVLVDGERVSEGEGHTKK 209 >gi|330446941|ref|ZP_08310592.1| ribonuclease III [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491132|dbj|GAA05089.1| ribonuclease III [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 224 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 109/204 (53%), Gaps = 6/204 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++++GY F N L+ ALTH S + ++ E RLEFLGD IL +++ L++ F S E Sbjct: 8 LQRKLGYQFNNSELMTLALTHRSANGNHNE---RLEFLGDSILSFVVADDLYHRFPSVDE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV +T +++ RE +L + + K SI AD VE++I A+YL Sbjct: 65 GDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFRRDSILADCVEAIIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D IE V ++K R ++ G ++D KT LQE + P Y V G H+ Sbjct: 125 DSDIEKVREIVLTWYKTRLETIEPGINQKDPKTRLQECLQGRRLPLPAYTVIKVQGEAHN 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKR 209 FTV +++GL P G S+R Sbjct: 185 QEFTVQCDVTGLDKPVIGKGGSRR 208 >gi|319943505|ref|ZP_08017787.1| ribonuclease III [Lautropia mirabilis ATCC 51599] gi|319743320|gb|EFV95725.1| ribonuclease III [Lautropia mirabilis ATCC 51599] Length = 247 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 114/219 (52%), Gaps = 10/219 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 TLE R+GY F + +LL +ALTH S H Q + ERLEFLGD +L +++LL+ F + Sbjct: 26 TLEGRLGYRFQSEALLVQALTHRS--HGRQHN-ERLEFLGDSVLNCAVASLLYARFADSP 82 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG LS +LV + +A L L + + RK SI AD VE+L+ A++ Sbjct: 83 EGALSRLRANLVKQDPLHDIACGLSLPDALILGEGERKSGGHRRPSILADAVEALLGAIF 142 Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 L+ G A V++ ++ A+ + +DAKT LQE+ P Y+V G H Sbjct: 143 LESGFAAAAGVVERLYQPLLDAIDPHELGKDAKTRLQEYLQGHRLPLPRYQVVATHGQAH 202 Query: 186 DPRFTVVVEISGLAPA---QGMDCSKRAAEQVAAAEVLK 221 D RF V ++ P +G S+R AEQVAA L+ Sbjct: 203 DQRFDVECQLD--KPKLSFEGSGESRRKAEQVAARAALE 239 >gi|325920677|ref|ZP_08182587.1| RNAse III [Xanthomonas gardneri ATCC 19865] gi|325548867|gb|EGD19811.1| RNAse III [Xanthomonas gardneri ATCC 19865] Length = 227 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 109/211 (51%), Gaps = 6/211 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ LL +AL H S + E RLEFLGD I+ LLI+ L+ + A EG L+ Sbjct: 13 IGHAFADPGLLAQALRHRSAGTPHNE---RLEFLGDGIVNLLIAEALYQRWPKADEGALT 69 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 70 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 129 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 130 ERCREVVLPWFEPSLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 189 Query: 191 VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220 V + +A A+G S+R AEQ AA V+ Sbjct: 190 VACILEQPVARAEGQGTSRRLAEQQAATLVI 220 >gi|319763845|ref|YP_004127782.1| ribonuclease iii [Alicycliphilus denitrificans BC] gi|330823891|ref|YP_004387194.1| ribonuclease 3 [Alicycliphilus denitrificans K601] gi|317118406|gb|ADV00895.1| ribonuclease III [Alicycliphilus denitrificans BC] gi|329309263|gb|AEB83678.1| Ribonuclease 3 [Alicycliphilus denitrificans K601] Length = 228 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 69/194 (35%), Positives = 102/194 (52%), Gaps = 5/194 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L++R+ + F++ SLL++A+TH S S + E RLEFLGD +L L +S+LLF Sbjct: 7 PALQQRLQHMFSDPSLLQRAVTHRSFSADHNE---RLEFLGDSVLNLAVSSLLFKRMQGL 63 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS LV E+ +A L L +R+ + SI AD +E++I A+ Sbjct: 64 PEGELSRVRALLVRQESLHGIAVRLQLPQVLRLGEGESRSGGKMRPSILADALEAVIGAV 123 Query: 127 YLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G E A V + ++ L + + +DAKT LQEW + P+Y+V +G Sbjct: 124 YLDAGYEQAQALVHRLFEGVELSPRLQEAAKDAKTALQEWLQGRKMSLPQYRVVQTTGVA 183 Query: 185 HDPRFTVVVEISGL 198 H F V E+ L Sbjct: 184 HKQVFHVACEVPAL 197 >gi|157371904|ref|YP_001479893.1| ribonuclease III [Serratia proteamaculans 568] gi|189043344|sp|A8GI25|RNC_SERP5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157323668|gb|ABV42765.1| Ribonuclease III [Serratia proteamaculans 568] Length = 226 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/212 (34%), Positives = 111/212 (52%), Gaps = 6/212 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + E RLEFLGD IL +I+ LF Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ RE DL +R+ K SI AD VE Sbjct: 58 QRFPRVDEGDMSRMRATLVRGNTLAEMGREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVERLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKR 209 G HD FT+ ++SGL+ P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRR 209 >gi|319792225|ref|YP_004153865.1| ribonuclease iii [Variovorax paradoxus EPS] gi|315594688|gb|ADU35754.1| ribonuclease III [Variovorax paradoxus EPS] Length = 228 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 114/217 (52%), Gaps = 6/217 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ R+ ++F++ LL+ ALTH S S + E RLEFLGD +L L +S LL+ + E Sbjct: 8 LQARLKHSFSDTRLLQLALTHRSFSADHNE---RLEFLGDSVLNLAVSHLLYTRLSALPE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV +T ++A EL L+ +R+ + SI AD +E+LI A+YL Sbjct: 65 GDLSRVRANLVKQDTLHRLALELQLSPLLRLGEGEARSGGPNRPSILADALEALIGAVYL 124 Query: 129 DGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G A V + ++ + + +D KTELQEW P Y+V G H Sbjct: 125 DAGFAAAEALVRRLYESVEITPRMEAAAKDPKTELQEWLQGHKMKLPMYRVAATLGAAHK 184 Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 F V E+ L +G+ S+RA EQ AAA +L R Sbjct: 185 QTFDVECEVPELGFRERGIGGSRRAGEQAAAAAMLIR 221 >gi|237737605|ref|ZP_04568086.1| ribonuclease III [Fusobacterium mortiferum ATCC 9817] gi|229419485|gb|EEO34532.1| ribonuclease III [Fusobacterium mortiferum ATCC 9817] Length = 240 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 10/231 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 Y EK +GY+F N+ LL+ +L H S + ++ S ERLE LGD +L L+++ L+ Sbjct: 4 NYLDFEKNLGYSFKNKELLKNSLIHRSFGNEHRRYKKISNERLELLGDAVLDLVVTEYLY 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ EG+L+ + +VS + ++++L++ ++ +S +SI D E Sbjct: 64 KSYANSTEGDLAKVKSMVVSEPVLAGISKKLEVGKYLLLSRGEELTGGRERSSILGDAFE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+Y+D E A FV + K + S + D KT LQE++ + V PEY V Sbjct: 124 AILGAIYMDSNFETAKEFVLTHIKDSIDHVDSNEEILDFKTILQEYSQKNYRVIPEYSVI 183 Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQ---GMDCSKRAAEQVAAAEVLKREGI 225 GPDH F + V+I +G+ + G +K+ AEQ AA + K+ G+ Sbjct: 184 NEIGPDHQKIFEIEVKIDNGIDEEKSDRGTGKNKKTAEQAAAKSLCKKLGV 234 >gi|121610179|ref|YP_997986.1| ribonuclease III [Verminephrobacter eiseniae EF01-2] gi|189043373|sp|A1WMW1|RNC_VEREI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|121554819|gb|ABM58968.1| RNAse III [Verminephrobacter eiseniae EF01-2] Length = 247 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 117/230 (50%), Gaps = 28/230 (12%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L++R+ + F++ LLE+A TH S S E ERLEFLGD +L L +S+LL+ + Sbjct: 7 ALQERLQHVFSDPGLLERATTHRSFS---AEHNERLEFLGDSVLNLAVSSLLYQRLSALP 63 Query: 68 EGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-------VCS---------- 109 EGELS VR N LV E+ Q+A L LA +R+ L + C+ Sbjct: 64 EGELSRVRAN-LVRQESLYQLALRLPLAQALRLGESLSGNRQRRSRRRCADELQPDEAGS 122 Query: 110 ---FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEW 164 SI AD +E+LI A+YLD G A V + ++ + + + RDAKT LQEW Sbjct: 123 GGLQHPSILADALEALIGAVYLDAGYASAQALVQRLFQDVEISPRMQAAARDAKTALQEW 182 Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 ++ P+Y+V R G H P F V I L + G S++A EQ Sbjct: 183 LASRKMKPPQYQVVARVGAAHCPTFEVACGIPALGLTERGSAGSRQAGEQ 232 >gi|117924215|ref|YP_864832.1| ribonuclease III [Magnetococcus sp. MC-1] gi|189043326|sp|A0L633|RNC_MAGSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|117607971|gb|ABK43426.1| RNAse III [Magnetococcus sp. MC-1] Length = 246 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 112/223 (50%), Gaps = 10/223 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES--------YERLEFLGDRILGLLISTLLF 60 LE+ + Y F LL+ ALTH S ++ ERLEFLGD +L L++S L+ Sbjct: 13 LEQALDYRFTQSDLLQLALTHRSAPLDGSKAGEVVATTHNERLEFLGDSVLNLIVSHRLY 72 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+LS LV+ + S+VA++L+L ++R+ K SI + +E Sbjct: 73 KRFGEVPEGQLSQWRAMLVNTRSLSEVAKDLELGRYLRMGRGEAKSGGREKYSILGNALE 132 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +L+ A+YLDGG E A VD+ + + ++ + +D KT LQE+ A+ P Y V Sbjct: 133 ALLGAIYLDGGFEAAERVVDRLFAHQVAGIEPEQQGKDYKTLLQEYLQARGEALPIYAVL 192 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H+ F V G SKR AEQ AA + L+ Sbjct: 193 SAEGPPHERVFVVSCHPREQLCGHGQGRSKREAEQHAAQQALE 235 >gi|289662799|ref|ZP_06484380.1| ribonuclease III [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670321|ref|ZP_06491396.1| ribonuclease III [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 227 Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 113/223 (50%), Gaps = 6/223 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+A R IG+AFA+ +LL +AL H S + E RLEFLGD I+ LLI+ L+ Sbjct: 1 MAANRTFQRGDLIGHAFADPALLAQALRHRSAGTPHNE---RLEFLGDGIVNLLIAEALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + A EG L+ LV + + R L+L + + K SI AD VE Sbjct: 58 QRWPKADEGALTRARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++AA+YLD G E V +++ AL GK +D KT LQEW A+ P Y + Sbjct: 118 AIVAAIYLDCGFERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALI 177 Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220 SG +H +F V + A A+G S+R AEQ AA V+ Sbjct: 178 SESGDEHAKQFHVACILEQPTARAEGQGTSRRLAEQQAATLVI 220 >gi|166712833|ref|ZP_02244040.1| ribonuclease III [Xanthomonas oryzae pv. oryzicola BLS256] Length = 226 Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 110/211 (52%), Gaps = 6/211 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ +LL +AL H S + E RLEFLGD I+ LL++ L+ + A EG L+ Sbjct: 12 IGHAFADPALLAQALRHRSAGTPHNE---RLEFLGDGIVNLLVAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKPEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188 Query: 191 VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220 V + +A A+G S+R AEQ AA V+ Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVI 219 >gi|320325568|gb|EFW81630.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. B076] gi|320327146|gb|EFW83160.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. race 4] gi|330879244|gb|EGH13393.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. race 4] Length = 229 Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 117/222 (52%), Gaps = 6/222 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF F A Sbjct: 6 SRLERQLGYTFKDQELMVLALTHRSFAGR---NNERLEFLGDAILNFVAGEALFERFPQA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS LV ET + +AR +L ++R+ S K SI AD +E+LI A+ Sbjct: 63 REGQLSRLRARLVKGETLALLARGFNLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G+E A V + +L +D KT LQE+ ++ P Y+V G Sbjct: 123 YLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEP 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 H F V EI+ L ++G S+R AEQVAAA L G+ Sbjct: 183 HCRTFFVECEINLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224 >gi|322514172|ref|ZP_08067237.1| ribonuclease III [Actinobacillus ureae ATCC 25976] gi|322119958|gb|EFX91960.1| ribonuclease III [Actinobacillus ureae ATCC 25976] Length = 222 Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 77/215 (35%), Positives = 114/215 (53%), Gaps = 6/215 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+K++ Y F + L +ALTH S ++ ERLEFLGD IL I LF F A E Sbjct: 6 LQKKLDYKFISLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKFPKANE 62 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +LV +T + +AR+ DL ++++ + K SI +D VE++IAA+YL Sbjct: 63 GELSRMRATLVREQTLAILARQFDLGEYMKLGAGELKSGGYRRESILSDCVEAIIAAIYL 122 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G++ A V +++ +K ++D KT LQE+ + P Y+V G H+ Sbjct: 123 DSGMDNAIERVSVWYQDLLAEMKPSDAQKDPKTRLQEFLQGRKLKLPAYEVIDIKGEAHN 182 Query: 187 PRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220 F V +I G+ S+R AEQ AA +VL Sbjct: 183 QTFKVTCKIETFDETFIGVGTSRRKAEQNAAEQVL 217 >gi|312959172|ref|ZP_07773691.1| Ribonuclease 3 [Pseudomonas fluorescens WH6] gi|311286942|gb|EFQ65504.1| Ribonuclease 3 [Pseudomonas fluorescens WH6] Length = 229 Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 117/223 (52%), Gaps = 8/223 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF F A Sbjct: 6 SRLERQLGYTFKDQELMVLALTHRSFAG---RNNERLEFLGDAILNFVAGEALFERFPQA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS LV ET + +AR L ++R+ S K SI AD +E+LI A+ Sbjct: 63 REGQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD G+E A V W ++S +D KT LQE+ ++ P Y+V G Sbjct: 123 YLDAGMEAAKARVTA-WLTSEIESLTLVDTNKDPKTRLQEFLQSRGCELPRYEVVDIQGE 181 Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 H F V EI+ L ++G S+R AEQVAAA L G+ Sbjct: 182 PHCRVFFVECEITLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224 >gi|304436759|ref|ZP_07396727.1| ribonuclease III [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370239|gb|EFM23896.1| ribonuclease III [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 238 Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 81/216 (37%), Positives = 118/216 (54%), Gaps = 7/216 (3%) Query: 13 IGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 +G FA+ S L++ALTH S ++ + ERLEFLGD +L L IST L++ + EG Sbjct: 20 LGVDFADLSTLDEALTHPSYANEARGHAAHNERLEFLGDAVLELAISTYLYDAYPHCAEG 79 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 EL+ SLV +ET +++AR L L + +R+ + + +V E++I A+YLD Sbjct: 80 ELTKMRASLVQSETLARLARRLHLGAHLRMGRGEMLGGGAERQNNLENVFEAVIGAVYLD 139 Query: 130 GGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G + A +V + + L+ +D KT LQE+ Y+ SGPDHD Sbjct: 140 RGWDAARAYVQRQFADELPHLRQEHVAQDYKTMLQEYVQGHDHEPIAYEQVAESGPDHDK 199 Query: 188 RFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKR 222 RFT+ V I G AP +G SK+ AEQ AAA L+R Sbjct: 200 RFTMRVRI-GTAPLGEGTGRSKKEAEQHAAAAALER 234 >gi|56478590|ref|YP_160179.1| ribonuclease III [Aromatoleum aromaticum EbN1] gi|81598583|sp|Q5P086|RNC_AZOSE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56314633|emb|CAI09278.1| ribonuclease III [Aromatoleum aromaticum EbN1] Length = 225 Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 71/192 (36%), Positives = 101/192 (52%), Gaps = 5/192 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++ +G+ F N +LLE+ALTH S Q + ERLEFLGD IL +++ LF F S +E Sbjct: 8 LQRSLGHRFDNPALLEQALTHRSFG---QPNNERLEFLGDSILNCVVAIALFERFASLRE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GE+S SLV + +VA ELDL ++R+ K SI AD +E++ AA +L Sbjct: 65 GEMSRLRASLVCQDGLHRVALELDLGEYLRLGEGEMKSGGFRRPSILADALEAVFAATFL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G A +D+ + A+ G +D KT LQE + P Y + G H Sbjct: 125 DQGFAAAKAVIDRLYDPMIAAIDPGVAAKDPKTALQELLQGRKLPLPTYVMAKVHGEAHA 184 Query: 187 PRFTVVVEISGL 198 F VV E++ L Sbjct: 185 QEFEVVCEVNAL 196 >gi|294626963|ref|ZP_06705554.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664535|ref|ZP_06729880.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598823|gb|EFF42969.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605697|gb|EFF49003.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 226 Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 110/211 (52%), Gaps = 6/211 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ +LL +AL H S + E RLEFLGD I+ LLI+ L+ + A EG L+ Sbjct: 12 IGHAFADPALLAQALRHRSAGTPHNE---RLEFLGDGIVNLLIAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYVLISESGDEHAKQFH 188 Query: 191 VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220 V + +A A+G S+R AEQ AA V+ Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVI 219 >gi|257460238|ref|ZP_05625341.1| ribonuclease III [Campylobacter gracilis RM3268] gi|257442303|gb|EEV17443.1| ribonuclease III [Campylobacter gracilis RM3268] Length = 303 Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 9/212 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++++GY F N++ L+ ALTH S + + ERLEFLGD ++ L++ LF F S+ E Sbjct: 7 LQEKLGYKFKNQTHLKIALTHKSAKNGHNN--ERLEFLGDAVMDLIVGEYLFKKF-SSDE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV+ + S+ A+ L + + +S ++ S+ +D E+++ A+YL Sbjct: 64 GDLSKLRAALVNESSFSKFAKFLGIGENLNMSLSEERNGGREKPSLLSDAFEAIMGAVYL 123 Query: 129 DGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G++ +A ++ + + + + RD KT LQE AKFGVTPEY + SGPD Sbjct: 124 ESGLQNTARIAIAILEILYPRISFN--ELVRDYKTALQELTQAKFGVTPEYILLGSSGPD 181 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 H F + + G + + SK+ AEQ A Sbjct: 182 HKKSFEMAALVGGKWLSSAVGASKKEAEQKCA 213 >gi|302542233|ref|ZP_07294575.1| ribonuclease III [Streptomyces hygroscopicus ATCC 53653] gi|302459851|gb|EFL22944.1| ribonuclease III [Streptomyces himastatinicus ATCC 53653] Length = 312 Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 111/208 (53%), Gaps = 6/208 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 34 HTILEGRLGYQLES-ALLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTLYRIH 92 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ ++V++ ++V R LDL +FIR+ SI AD +E++I Sbjct: 93 PDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVI 152 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G++ A V + + KS D KT LQE + PEY V+ + Sbjct: 153 GAVYLDRGLDAAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVS-ET 211 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDH+ FT + G+A G SK+ Sbjct: 212 GPDHEKTFTAAARVGGVAYGTGTGRSKK 239 >gi|55821300|ref|YP_139742.1| ribonuclease III [Streptococcus thermophilus LMG 18311] gi|55823213|ref|YP_141654.1| ribonuclease III [Streptococcus thermophilus CNRZ1066] gi|81559233|sp|Q5LZ68|RNC_STRT1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|81560422|sp|Q5M3S3|RNC_STRT2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|55737285|gb|AAV60927.1| ribonuclease III [Streptococcus thermophilus LMG 18311] gi|55739198|gb|AAV62839.1| ribonuclease III [Streptococcus thermophilus CNRZ1066] Length = 237 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 112/222 (50%), Gaps = 7/222 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ G F+ + LLE A TH+S ++ ++ ERLEFLGD L L+IS L+N + Sbjct: 16 LEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYP 75 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGE+S +++V E+ + + +IR+ K +I D+ E+ + Sbjct: 76 NKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWEAFLG 135 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G+ F+++ + K G F R D KT LQE V Y V SG Sbjct: 136 ALYLDQGLPAVEKFLNQVMIPQVEK-GNFDRVIDYKTALQERLQVNGKVDITYTVIDESG 194 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P H FT+ V + G + G+ SK+ AEQ AA L++ G Sbjct: 195 PAHAKEFTMQVAVDGKELSTGLGKSKKLAEQAAAKSALEQLG 236 >gi|148658678|ref|YP_001278883.1| ribonuclease III [Roseiflexus sp. RS-1] gi|254807897|sp|A5V230|RNC_ROSS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|148570788|gb|ABQ92933.1| RNAse III [Roseiflexus sp. RS-1] Length = 237 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 70/193 (36%), Positives = 104/193 (53%), Gaps = 8/193 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLLFNH 62 L R+G F+++ LLE+ALTHSS + + E S ERLEFLGD I+ L + L+F Sbjct: 8 LSARLGVTFSDQRLLEQALTHSSFLNEHVEERMHLDSNERLEFLGDAIINFLAARLVFER 67 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A EGEL+ +L+ ET + A+ +L +++ ++ ++ AD E++ Sbjct: 68 FPDAGEGELTAWRTALIRTETLAGFAQRYNLGAYVLLARGEESSGARQRQALLADTFEAV 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 IAAL+LD G+ TF+ ++ +L D K+ LQ A+ VTP Y R Sbjct: 128 IAALFLDQGLNAVRTFLLPLFEAELASLPDRTLPVDYKSRLQARIQAERRVTPRYHEIDR 187 Query: 181 SGPDHDPRFTVVV 193 SGP+H P FTV V Sbjct: 188 SGPEHRPEFTVEV 200 >gi|58581478|ref|YP_200494.1| ribonuclease III [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623408|ref|YP_450780.1| ribonuclease III [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|75435762|sp|Q5H1R2|RNC_XANOR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|58426072|gb|AAW75109.1| ribonuclease III [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367348|dbj|BAE68506.1| ribonuclease III [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 226 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 109/211 (51%), Gaps = 6/211 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ LL +AL H S + E RLEFLGD I+ LL++ L+ + A EG L+ Sbjct: 12 IGHAFADPDLLAQALRHRSAGTPHNE---RLEFLGDGIVNLLVAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188 Query: 191 VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220 V + +A A+G S+R AEQ AA V+ Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVI 219 >gi|207109381|ref|ZP_03243543.1| ribonuclease III [Helicobacter pylori HPKX_438_CA4C1] Length = 197 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 68/182 (37%), Positives = 106/182 (58%), Gaps = 8/182 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 20 YTTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 77 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA+ +++A+ + L ++RVSS SI + E+L+A Sbjct: 78 YDEGKLSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEEISKGREKPSILSSAFEALMAG 137 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G+ ++ +++ +K+ L+ D KT LQE A+F V P Y++ Sbjct: 138 VYLEAGLAKVRKIMQNLLNRAYKRLDLEH--LSVDYKTALQELTQAQFCVIPTYQLLKEK 195 Query: 182 GP 183 GP Sbjct: 196 GP 197 >gi|194335354|ref|YP_002017148.1| Ribonuclease III [Pelodictyon phaeoclathratiforme BU-1] gi|194307831|gb|ACF42531.1| Ribonuclease III [Pelodictyon phaeoclathratiforme BU-1] Length = 273 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 116/233 (49%), Gaps = 15/233 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLI 55 +SA + L++ +G +N L + ALTH S+ H S ES +RLEFLGD +LG+LI Sbjct: 39 LSAETVAYLQQLVGEPVSNLPLYQTALTHRSVVHDPATTSLIESNQRLEFLGDSVLGMLI 98 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S LF F ++ EGELS +V++++ + AR L L + + S Sbjct: 99 SEYLFRKFPTSAEGELSSNRAKIVNSKSLAGFARSLCLGDHLILGESADHHKIRSSESAL 158 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKF 169 AD ESLI A+YLD GI+ A FV + + F + K+ L E+ + Sbjct: 159 ADAFESLIGAIYLDKGIKTAFDFVIRSIIEHV----NFNTIVAAEHNYKSRLIEYTQSNH 214 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P Y V +G +H+ FTV V SG G K+ AEQ+AA E ++R Sbjct: 215 LPPPLYTVITETGAEHEKSFTVGVSCSGELLGTGTAQRKKDAEQLAAKEAMER 267 >gi|188577282|ref|YP_001914211.1| ribonuclease III [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521734|gb|ACD59679.1| ribonuclease III [Xanthomonas oryzae pv. oryzae PXO99A] Length = 226 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 109/211 (51%), Gaps = 6/211 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ LL +AL H S + E RLEFLGD I+ LL++ L+ + A EG L+ Sbjct: 12 IGHAFADPDLLAQALRHRSAGTPHNE---RLEFLGDGIVNLLVAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGEWKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188 Query: 191 VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220 V + +A A+G S+R AEQ AA V+ Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVI 219 >gi|167745647|ref|ZP_02417774.1| hypothetical protein ANACAC_00339 [Anaerostipes caccae DSM 14662] gi|317472750|ref|ZP_07932063.1| ribonuclease III [Anaerostipes sp. 3_2_56FAA] gi|167654959|gb|EDR99088.1| hypothetical protein ANACAC_00339 [Anaerostipes caccae DSM 14662] gi|316899776|gb|EFV21777.1| ribonuclease III [Anaerostipes sp. 3_2_56FAA] Length = 231 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 119/232 (51%), Gaps = 8/232 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIS 56 M+ +K+I F ++ LL ALTHSS ++ S + ERLEFLGD +L L++S Sbjct: 1 MNQSNQEDFQKKIKIRFHDKKLLTTALTHSSYANERKLSRGKDNERLEFLGDAVLELIMS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF+ + EG+L+ SLV T + A++L L ++ +S SI + Sbjct: 61 DYLFHTYKDEPEGKLTKMRASLVCEPTLAFCAKDLSLGDYLLLSKGEDLTGGRERDSILS 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP-EY 175 D E++I A+YLD G E A FV+ Y Q + F DAKT LQE + F P Y Sbjct: 121 DAFEAVIGAVYLDQGFEEARKFVETYLLQDVDEKVLF-YDAKTSLQELVQS-FSKQPLTY 178 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK-REGIW 226 ++ GPDH FTV + G SK++AEQ AA E +K ++GI Sbjct: 179 ELIKEDGPDHQKTFTVEARLGEKVIGTGTGRSKKSAEQTAAYEAMKHKDGIL 230 >gi|322834127|ref|YP_004214154.1| ribonuclease III [Rahnella sp. Y9602] gi|321169328|gb|ADW75027.1| ribonuclease III [Rahnella sp. Y9602] Length = 226 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 73/212 (34%), Positives = 112/212 (52%), Gaps = 6/212 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEKLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKR 209 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNQPVVGTGSSRR 209 >gi|319939366|ref|ZP_08013726.1| ribonuclease 3 [Streptococcus anginosus 1_2_62CV] gi|319811352|gb|EFW07647.1| ribonuclease 3 [Streptococcus anginosus 1_2_62CV] Length = 232 Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 112/224 (50%), Gaps = 7/224 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + L ++ G F + LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 5 HKVLSQQFGIVFQDEKLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLISEYLYK 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG+LS +++V E+ + +R+ FI++ K +I D+ E+ Sbjct: 65 KYPKKPEGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEA 124 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 + AL LD G+E F+ + + ++ G F + D KT+LQE V Y+V Sbjct: 125 FLGALLLDKGVEAVKNFLYQVMIPK-VEVGDFEQVVDYKTKLQELLQVNGDVEIVYQVIS 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V V + G QG SK+ AEQ AA ++E Sbjct: 184 ESGPAHAKEFAVAVSVDGRTVGQGQGRSKKLAEQEAAKNAFEKE 227 >gi|324993856|gb|EGC25775.1| ribonuclease III [Streptococcus sanguinis SK405] gi|325690806|gb|EGD32807.1| ribonuclease III [Streptococcus sanguinis SK115] gi|332367146|gb|EGJ44882.1| ribonuclease III [Streptococcus sanguinis SK1059] Length = 232 Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + LE+ F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENLKKALLEQ-FDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E +F+ + + +++G F R D KT+LQE V Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIT 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V +GP H F V V I+G QG SK+ AEQ AA ++E Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227 >gi|33519987|ref|NP_878819.1| ribonuclease III [Candidatus Blochmannia floridanus] gi|81666891|sp|Q7VRR0|RNC_BLOFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|33504333|emb|CAD83226.1| ribonuclease III [Candidatus Blochmannia floridanus] Length = 232 Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 8/225 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + + + L+K++GY F LL +ALTH S S+ + E RLEFLGD IL I+ +L+ Sbjct: 4 IKCIEINLLQKKLGYFFHTVDLLLRALTHRSFSNKHNE---RLEFLGDSILNYSITNILY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ EG++S +SLV + T ++A+E L + +++ K+ SI AD VE Sbjct: 61 HRYNHMDEGDMSRIRSSLVCSRTLVELAKEFKLGNCLKLGQGELKNKGYNRESILADTVE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKV 177 ++I ++LD I+ + +W Q L ++D KT LQE+ P Y + Sbjct: 121 AIIGGIFLDSNIKTIEMLI-AFWYQFRLNKIDLEDKQKDPKTRLQEYLQHHHLPLPIYCI 179 Query: 178 TFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 G HD F + ++S L G S+R AEQ AA LK Sbjct: 180 NQVQGQAHDQIFIMNCQVSSLKYSVMGRGSSRRKAEQDAAENALK 224 >gi|125718368|ref|YP_001035501.1| ribonuclease III [Streptococcus sanguinis SK36] gi|189043368|sp|A3CP46|RNC_STRSV RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|125498285|gb|ABN44951.1| Ribonuclease III, putative [Streptococcus sanguinis SK36] gi|324994823|gb|EGC26736.1| ribonuclease III [Streptococcus sanguinis SK678] gi|325687264|gb|EGD29286.1| ribonuclease III [Streptococcus sanguinis SK72] gi|325694850|gb|EGD36755.1| ribonuclease III [Streptococcus sanguinis SK150] gi|332358679|gb|EGJ36502.1| ribonuclease III [Streptococcus sanguinis SK355] gi|332358950|gb|EGJ36771.1| ribonuclease III [Streptococcus sanguinis SK49] Length = 232 Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + LE+ F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENLKKALLEQ-FDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E +F+ + + +++G F R D KT+LQE V Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIA 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V +GP H F V V I+G QG SK+ AEQ AA ++E Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227 >gi|268608881|ref|ZP_06142608.1| ribonuclease III [Ruminococcus flavefaciens FD-1] Length = 229 Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 119/220 (54%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65 E IGY F N+ L+E+AL+HSS ++ + S ERLEFLGD +L +++S L+ + + Sbjct: 7 FENIIGYTFKNKELIEQALSHSSYANEKKRAGGSNERLEFLGDSVLSIVVSDYLYKNIN- 65 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL+ SLV ++ A++++L F+ + SI AD E++IAA Sbjct: 66 VPEGELTKMRASLVCEKSLFVFAQQIELGEFLHLGKGEENTGGRERPSILADAFEAVIAA 125 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +YLDGG+E A + ++ + ++ K D KT LQE EY + GPD Sbjct: 126 IYLDGGMEAAAKHILRFMPEDIKRTKKPVLSDFKTLLQEVVQKNPEEKVEYVLIGEEGPD 185 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H+ RF V V ++ +G SK+ AEQ+AA E L+ G Sbjct: 186 HNKRFVVEVCLNSQVIGKGKGKSKKEAEQLAAKEALELMG 225 >gi|323351215|ref|ZP_08086871.1| ribonuclease III [Streptococcus sanguinis VMC66] gi|322122439|gb|EFX94150.1| ribonuclease III [Streptococcus sanguinis VMC66] gi|324991496|gb|EGC23429.1| ribonuclease III [Streptococcus sanguinis SK353] gi|328946755|gb|EGG40893.1| ribonuclease III [Streptococcus sanguinis SK1087] Length = 232 Score = 111 bits (277), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + LE+ F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENLKKALLEQ-FDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E +F+ + + +++G F R D KT+LQE V Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIT 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V +GP H F V V I+G QG SK+ AEQ AA ++E Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227 >gi|327461014|gb|EGF07347.1| ribonuclease III [Streptococcus sanguinis SK1057] Length = 232 Score = 111 bits (277), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 117/229 (51%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + + LE+ FA+ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENFKKALLEQ-FDLVFADETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E +F+ + + +++G F R D KT+LQE V Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIT 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V +GP H F V V I+G QG SK+ AEQ AA ++E Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227 >gi|322379758|ref|ZP_08054068.1| ribonuclease III [Helicobacter suis HS5] gi|321147829|gb|EFX42419.1| ribonuclease III [Helicobacter suis HS5] Length = 224 Score = 111 bits (277), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 71/213 (33%), Positives = 109/213 (51%), Gaps = 4/213 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + TL+KR+GY F + LL++ALTH S ++ ERLEFLGD +L L+++ +LF F Sbjct: 2 FETLQKRLGYVFKDPLLLQQALTHRSTKA--HKNNERLEFLGDAVLDLVVAEILFTRFTD 59 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG+LS SLV+ + ++A L+L I +S + SI + E+L+ A Sbjct: 60 LQEGDLSKMRASLVNEKAFFKLALSLNLQDHILISQAEANNNGHTKPSILSSAFEALMGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+E+ + L D K+ LQE A+F P Y + SGP Sbjct: 120 IYLESGLEIIKNLIQDLLDMAYPNLSPKTLFMDYKSALQELTQARFKAIPIYALKSESGP 179 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 DH +F + + I SK+ AEQ+ A Sbjct: 180 DHAKQFEMQIFILNKLYGTCKAGSKKQAEQLCA 212 >gi|297156899|gb|ADI06611.1| ribonuclease III [Streptomyces bingchenggensis BCW-1] Length = 276 Score = 111 bits (277), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 72/212 (33%), Positives = 113/212 (53%), Gaps = 6/212 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 20 TASSHTILEGRLGYQLES-ALLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTL 78 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R LDL +FIR+ SI AD + Sbjct: 79 YRIHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTL 138 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + +S D KT LQE + PEY V Sbjct: 139 EAVIGAVYLDKGLDAAAELVHRLFDPLIDRSSNLGAGLDWKTSLQELTATEGLGVPEYLV 198 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + +GPDH+ FT + G+A G SK+ Sbjct: 199 S-ETGPDHEKTFTAAARVGGVAYGTGTGRSKK 229 >gi|323340721|ref|ZP_08080973.1| ribonuclease III [Lactobacillus ruminis ATCC 25644] gi|323091844|gb|EFZ34464.1| ribonuclease III [Lactobacillus ruminis ATCC 25644] Length = 230 Score = 111 bits (277), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 110/219 (50%), Gaps = 7/219 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64 L+ G N L ++A TH+S + + + YER+EFLGD ++ L +S LF + Sbjct: 9 LKDDYGINVKNTDLFDEAFTHASYVNEHPKEHLKYYERIEFLGDAVMQLCVSEYLFKRYP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S EG+LS ++V ++ S+ A+E +IR+ K +S+ D+ ES I Sbjct: 69 SLPEGKLSRLRAAMVCEDSFSKFAKECHFDEYIRLGKGEEKADARNRSSLLCDIFESFIG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G + F+ + L G F D KTELQE+ EYK+ G Sbjct: 129 ALYLDQGKDKVVEFISAVVFPK-LDMGWFDHLLDHKTELQEYLQQNGDCKIEYKMLDEKG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 PD+D +T+ V G +G+ SK+ AEQ AA + LK Sbjct: 188 PDNDKTYTMAVYADGKKIGEGVGSSKKNAEQAAAYQALK 226 >gi|297568930|ref|YP_003690274.1| ribonuclease III [Desulfurivibrio alkaliphilus AHT2] gi|296924845|gb|ADH85655.1| ribonuclease III [Desulfurivibrio alkaliphilus AHT2] Length = 232 Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 79/216 (36%), Positives = 106/216 (49%), Gaps = 5/216 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHFDSA 66 +R+GY F + LL +ALTH S + + ERLEFLGD +L L + LL+ Sbjct: 12 QRLGYCFHDPQLLRQALTHRSFTAEGGGRGRPHNERLEFLGDAVLDLAVGELLYRRHPKM 71 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EGELS R +LV+ +++AR L + + + SI AD E+L+ A+ Sbjct: 72 REGELSRRRAALVNEAHLARMARRTGLDELLLLGRGEAQSGGRDKPSILADAFEALLGAV 131 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLDGG + + F DAKT LQE + G P Y++ GP H Sbjct: 132 YLDGGCRAVLDLAAELFAPWVTDQDDFEENDAKTALQEVLQERHGQAPGYRLVAEEGPAH 191 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 D RFTV VE G QG SK+ AEQ AA LK Sbjct: 192 DKRFTVEVEFRGRVMGQGKARSKKEAEQAAARAALK 227 >gi|327463120|gb|EGF09441.1| ribonuclease III [Streptococcus sanguinis SK1] gi|327474731|gb|EGF20136.1| ribonuclease III [Streptococcus sanguinis SK408] gi|327490288|gb|EGF22076.1| ribonuclease III [Streptococcus sanguinis SK1058] gi|332362454|gb|EGJ40254.1| ribonuclease III [Streptococcus sanguinis SK1056] Length = 232 Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + LE+ F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENLKKALLEQ-FDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E +F+ + + +++G F R D KT+LQE V Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIA 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V +GP H F V V I+G QG SK+ AEQ AA ++E Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227 >gi|300311260|ref|YP_003775352.1| dsRNA-specific ribonuclease [Herbaspirillum seropedicae SmR1] gi|300074045|gb|ADJ63444.1| dsRNA-specific ribonuclease (RNAse III) protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 112/215 (52%), Gaps = 14/215 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++R+G+ F + SLL++ALTH S S + E RLEFLGD +L ++++LLF +D E Sbjct: 6 LQQRLGHTFKDASLLQQALTHRSHSALHNE---RLEFLGDSVLNCVVASLLFERYDKIDE 62 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV ++ ++A+ L+L+ F+R+ K SI AD +E+L A++L Sbjct: 63 GDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAIFL 122 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G E A + + + +DAKT LQE+ K P+Y V G H Sbjct: 123 DSGFEAARAVIRSLYVPVLEHVDPRTLGKDAKTLLQEFLQGKKIPLPQYNVIATHGAAHS 182 Query: 187 PRFTVVVEISGLAPAQ-----GMDCSKRAAEQVAA 216 F EI L P G S+RA EQ AA Sbjct: 183 QEF----EIECLVPKLDIQVFGTGGSRRAGEQAAA 213 >gi|152986476|ref|YP_001350091.1| ribonuclease III [Pseudomonas aeruginosa PA7] gi|189043330|sp|A6VAK6|RNC_PSEA7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|150961634|gb|ABR83659.1| ribonuclease III [Pseudomonas aeruginosa PA7] Length = 229 Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 119/220 (54%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL +I LF+HF A+E Sbjct: 8 LERKLGYTFKDQDLMVLALTHRSYA---GRNNERLEFLGDAILNFVIGEALFHHFPQARE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS LV ET + +AR ++ ++R+ S K SI AD +E+LI A+YL Sbjct: 65 GQLSRLRARLVKGETLALLARGFEVGDYLRLGSGELKSGGFRRESILADAMEALIGAIYL 124 Query: 129 DGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G++ A + + + R L +D KT LQE+ ++ P Y+V G H Sbjct: 125 DTGMDSARERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRGCDLPRYEVVDIQGEPHC 184 Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225 F V E++ L+ G S+R AEQVAAA L G+ Sbjct: 185 RTFFVDCEVALLSDKTHGHGGSRRIAEQVAAAAALVALGV 224 >gi|300704607|ref|YP_003746210.1| ribonuclease III (RNAse III) [Ralstonia solanacearum CFBP2957] gi|299072271|emb|CBJ43604.1| Ribonuclease III (RNase III) [Ralstonia solanacearum CFBP2957] Length = 256 Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 112/212 (52%), Gaps = 8/212 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++R+GY F+ + LL++ALTH S S ++ E RLEFLGD IL ++ +L+ F E Sbjct: 6 LQQRLGYRFSKQELLQQALTHRSHSATHNE---RLEFLGDSILNCAVADMLYGMFGKLDE 62 Query: 69 GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G+LS VR N LV + ++A+ L L +R+ K SI AD +E++ A++ Sbjct: 63 GDLSRVRAN-LVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIFGAVF 121 Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDGG + A T + K + + +DAKT LQE+ P+Y V G H Sbjct: 122 LDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATHGAAH 181 Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216 + +F V I L G S+RAAEQ AA Sbjct: 182 NQQFEVECTIPKLEIRVSGSGASRRAAEQSAA 213 >gi|166365898|ref|YP_001658171.1| ribonuclease III [Microcystis aeruginosa NIES-843] gi|166088271|dbj|BAG02979.1| ribonuclease III [Microcystis aeruginosa NIES-843] Length = 226 Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 73/216 (33%), Positives = 105/216 (48%), Gaps = 11/216 (5%) Query: 17 FANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F N LL +ALTH S + E+ ERLEFLGD IL L+ LL+ + + E EL+ Sbjct: 7 FQNALLLTQALTHRSYVNEQSELTENNERLEFLGDAILAFLVGELLYQKYPAMNEAELTR 66 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 ++LV E +Q+ E+ L +R+ KD ++ AD E++I A YLD G+ Sbjct: 67 LRSNLVKEEQLAQLGLEIGLGELMRLGKGAIKDRGRSNPTLLADTFEAIIGAYYLDSGLN 126 Query: 134 VAGTF-------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + V + + +S F DAK Q+WA A F PEY + +GP H Sbjct: 127 AVKNYLHGLFIPVASHLVSQQSESSSF-IDAKNLFQQWALANFASNPEYAIIDVTGPPHA 185 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 FT V ++ L G K+ A + AA + LKR Sbjct: 186 REFTAEVRVNNLLYGTGKGKRKQDATKAAAEDALKR 221 >gi|238759682|ref|ZP_04620842.1| Ribonuclease 3 [Yersinia aldovae ATCC 35236] gi|238702110|gb|EEP94667.1| Ribonuclease 3 [Yersinia aldovae ATCC 35236] Length = 226 Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIHTIERLILAWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL P G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVVGTGSSRRKAEQAAAEQALKQ 222 >gi|117928781|ref|YP_873332.1| ribonuclease III [Acidothermus cellulolyticus 11B] gi|117649244|gb|ABK53346.1| RNAse III [Acidothermus cellulolyticus 11B] Length = 246 Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 114/209 (54%), Gaps = 11/209 (5%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 +LLE+A+TH S ++ + ERLEFLGD +LGL+I+ L+ F EG+L+ +++ Sbjct: 30 ALLERAVTHRSYAYENGGLPTNERLEFLGDAVLGLVITDTLYRRFPELPEGQLAKFRSAV 89 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 V+ ++VAR L L F+R+ +SI AD +E+LI A+Y++ G++ A F Sbjct: 90 VNMRALAEVARSLRLGEFLRLGRGEESTGGRNKSSILADALEALIGAVYVEHGLDGAAEF 149 Query: 139 VDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 V + + + AL +G D KT LQE A+ P Y ++ R GPDH+ FT V Sbjct: 150 VHRLFDPLIDRAAALGAGL---DWKTSLQELTAAQHLGVPFYDLSER-GPDHEKVFTAEV 205 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 I G G SK+ AEQ AA E R Sbjct: 206 RIGGRVYGTGSGHSKKEAEQRAAQEAWLR 234 >gi|238926905|ref|ZP_04658665.1| ribonuclease III [Selenomonas flueggei ATCC 43531] gi|238885139|gb|EEQ48777.1| ribonuclease III [Selenomonas flueggei ATCC 43531] Length = 238 Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 75/202 (37%), Positives = 110/202 (54%), Gaps = 5/202 (2%) Query: 17 FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 FA+ SLLE+ALTH S + +E ERLEFLGD +L L IST L+ + EGEL+ Sbjct: 24 FADLSLLEEALTHPSYVNEARERATHNERLEFLGDAVLELAISTYLYVAYPHCSEGELTK 83 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 SLV +ET +++AR L L + +R+ + + +V E++I A+YLD G + Sbjct: 84 MRASLVQSETLARLARRLHLGAHLRMGRGEMLGGGAERQNNLENVFEAVIGAVYLDRGWD 143 Query: 134 VAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 A ++V + + + L+ +D KT LQE+ Y+ SGPDHD RFT+ Sbjct: 144 AAYSYVQRQFTEEVTRLRQEHAVQDYKTMLQEYVQGHRHECIAYEQVAESGPDHDKRFTM 203 Query: 192 VVEISGLAPAQGMDCSKRAAEQ 213 V I +G+ SK+ AEQ Sbjct: 204 RVRIGMEVLGEGIGRSKKEAEQ 225 >gi|158521513|ref|YP_001529383.1| ribonuclease III [Desulfococcus oleovorans Hxd3] gi|158510339|gb|ABW67306.1| Ribonuclease III [Desulfococcus oleovorans Hxd3] Length = 231 Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 111/223 (49%), Gaps = 7/223 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLL 59 + + LE+ + Y F + LL KAL HSS + E ERLEFLGD L L I LL Sbjct: 1 MNTTLLEQHLVYRFTDTGLLAKALRHSSYVNEQADPAMEDNERLEFLGDAALSLCIGHLL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F EG+LS LV+A + + R ++L ++ + + SI A+ V Sbjct: 61 MARFPELSEGDLSQTRAGLVNAGWLADIGRSMNLGEYVLLGKGEEQTNGRNKDSILANAV 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+L+ A+YLDGG + V ++ AL + R+ K+ LQE A G P Y++ Sbjct: 121 EALLGAIYLDGGFDAVMAVVRHKFENDIEALAALDMNRNYKSLLQELTQATDGKAPTYEI 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +GPDHD F V +G A+G +K+ A+Q AA + L Sbjct: 181 IDETGPDHDKTFHCRVS-AGDIQAEGSGKNKKTAQQDAAHKAL 222 >gi|330811510|ref|YP_004355972.1| ribonuclease III [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379618|gb|AEA70968.1| Ribonuclease III [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 229 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 117/222 (52%), Gaps = 6/222 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF F A Sbjct: 6 SRLERQLGYTFKDQDLMLLALTHRSFAG---RNNERLEFLGDAILNFVAGEALFERFPLA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS LV ET + +AR DL ++R+ S K SI AD +E+LI A+ Sbjct: 63 REGQLSRLRARLVKGETLAVLARGFDLGDYLRLGSGELKSGGFRRESILADALEALIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G+E+A V + +L +D KT LQE+ ++ P Y+V G Sbjct: 123 YLDAGMEMARERVLAWLTSEIDSLTLVDTNKDPKTRLQEFLQSRSCELPRYEVVDIQGEP 182 Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225 H F V E+ L ++G S+R AEQVAAA L G+ Sbjct: 183 HCRTFFVECEVVLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224 >gi|310779301|ref|YP_003967634.1| RNAse III [Ilyobacter polytropus DSM 2926] gi|309748624|gb|ADO83286.1| RNAse III [Ilyobacter polytropus DSM 2926] Length = 237 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH---SYQE-SYERLEFLGDRILGLLISTLLFN 61 + LEK++ Y F ++ LL+ AL H S + Y++ + ERLE LGD +L L+++ L+ Sbjct: 6 FVELEKKLKYTFKSKKLLKHALIHRSYGNENWDYKKVNNERLELLGDAVLDLVVTEYLYL 65 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF S+ EG+L+ + +VS ++++R+L + + + +S +SI DV E+ Sbjct: 66 HFTSSSEGDLAKLKSMIVSEPVLAKISRKLGVGNHLLLSKGEELTGGRDRSSILGDVFEA 125 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++ A+YLD +A F K+ K+ + + D KT LQE++ ++ V P Y+V Sbjct: 126 ILGAVYLDSDFMLAKEFAIKHLKRFIDHIDENEDLIDFKTILQEFSQREYKVIPSYEVIK 185 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDH F + V+I+ G +K++AEQ AA ++ G+ Sbjct: 186 EMGPDHRKSFEIAVKINDELMGLGTGRNKKSAEQSAARNACRKLGV 231 >gi|154249761|ref|YP_001410586.1| ribonuclease III [Fervidobacterium nodosum Rt17-B1] gi|154153697|gb|ABS60929.1| Ribonuclease III [Fervidobacterium nodosum Rt17-B1] Length = 239 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 14/226 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLLFNH 62 L++R+GY F N+ LL AL HSS ++ + ERLEFLGD ++ L++ +L+ + Sbjct: 15 LQRRLGYTFKNQMLLFNALCHSSYAYELNQIGRDVQDNERLEFLGDAVVELVVCDILYRN 74 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + + EG+++ ++ S E +++A E++L +I + K +SI AD E+L Sbjct: 75 YPDSSEGDMAKVKGAVASEEVLTELANEIELGKYIFLGKGEEKTGGRKRSSILADAFEAL 134 Query: 123 IAALYLDGGIE-VAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 AA+YLDG +E V F +K ++ +G+ D KT LQE +F PEYK Sbjct: 135 CAAIYLDGNLESVVKVFGEKLKREIEIFYTGQRIFDYKTALQEITQERFKELPEYKTV-- 192 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223 D + +F V + I G + G+ SK+ AE+ AA E+L R+ Sbjct: 193 -KNDENGKFLVELYIQGKKISMGIGNSKKDAEKDAAKKAYEILTRD 237 >gi|116628032|ref|YP_820651.1| ribonuclease III [Streptococcus thermophilus LMD-9] gi|122267372|sp|Q03K17|RNC_STRTD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116101309|gb|ABJ66455.1| RNAse III [Streptococcus thermophilus LMD-9] gi|312278628|gb|ADQ63285.1| Ribonuclease 3 [Streptococcus thermophilus ND03] Length = 229 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 111/222 (50%), Gaps = 7/222 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ G F+ + LLE A TH+S ++ ++ ERLEFLGD L L+IS L+N + Sbjct: 8 LEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGE+S +++V E+ + + +IR+ K +I D+ E+ + Sbjct: 68 NKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWEAFLG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G+ F+++ + K G F R D KT LQE V Y V SG Sbjct: 128 ALYLDQGLPAVEKFLNQVMIPQVEK-GNFDRVIDYKTALQERLQVNGKVDITYTVIDESG 186 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P H FT+ V + G + G SK+ AEQ AA L++ G Sbjct: 187 PAHAKEFTMQVAVDGKELSTGFGKSKKLAEQAAAKSALEQLG 228 >gi|332703537|ref|ZP_08423625.1| Ribonuclease 3 [Desulfovibrio africanus str. Walvis Bay] gi|332553686|gb|EGJ50730.1| Ribonuclease 3 [Desulfovibrio africanus str. Walvis Bay] Length = 233 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 112/221 (50%), Gaps = 5/221 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57 M R + ++ + Y F + L +ALTHSS ++ ++ ES ERLEFLGD +L L IS Sbjct: 3 MDMDRLAAIQAELDYHFGQPAYLARALTHSSYANEHELALESNERLEFLGDAVLELAISE 62 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF F A EG+L+ + LV +T +Q AR+L L I + S+ AD Sbjct: 63 CLFQRFPMAHEGQLTRIRSRLVKEKTLAQRARDLGLDRLILLGRGEESQGGRDRDSVLAD 122 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEY 175 +E+L+ A++LDGG A FV + ++ ++ +D KT LQE +F + P Y Sbjct: 123 ALEALLGAVFLDGGYLAAREFVSRTFQDLLPETADLPKVKDYKTRLQEITQQRFKIRPIY 182 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 SGPDH + V V + A S + AEQ AA Sbjct: 183 AQLGTSGPDHARIYEVEVRLPEGASFAATGASLKRAEQNAA 223 >gi|222152723|ref|YP_002561900.1| ribonuclease III [Streptococcus uberis 0140J] gi|254807903|sp|B9DRH1|RNC_STRU0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|222113536|emb|CAR41327.1| ribonuclease III [Streptococcus uberis 0140J] Length = 230 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/211 (35%), Positives = 112/211 (53%), Gaps = 7/211 (3%) Query: 17 FANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F +++LLE A TH+S ++ ++ ERLEFLGD +L L+IS LF + EGELS Sbjct: 16 FEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFKKYPHKAEGELS 75 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + + +V E+ + +R +I++ K +I D+ E+ + AL LD G+ Sbjct: 76 KQRSMIVREESLASFSRHCAFEPYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGV 135 Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E F+++ + K G F + D KT LQE AK +YKV SGP H +F Sbjct: 136 EEVRRFLNQVMIPQVEK-GNFEKVNDYKTSLQEILQAKGDTIIDYKVINESGPAHAKQFE 194 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 VVV + + ++G+ SK+ AEQ AA LK Sbjct: 195 VVVLANQVELSKGIGRSKKLAEQNAAENALK 225 >gi|328957311|ref|YP_004374697.1| ribonuclease III [Carnobacterium sp. 17-4] gi|328673635|gb|AEB29681.1| ribonuclease III [Carnobacterium sp. 17-4] Length = 245 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 115/220 (52%), Gaps = 7/220 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+ + F + S LE+A THSS + ++ + ER+EFLGD +L L +S L+ Sbjct: 21 TQLKTKFDLVFHDLSYLEEAFTHSSYVNEHRNLELKDNERIEFLGDAVLELTVSRFLYEL 80 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + + EG+L+ ++V + SQ A+E + FIR+ + ++ D+ ES Sbjct: 81 YPNLPEGKLTRLRATIVCEASLSQFAKEYEFDQFIRLGRGEERMNGRKRPALLCDLFESF 140 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD GI+ +F+D+ + +KSG F D KT LQE+ K + +Y++ Sbjct: 141 IGALYLDQGIDSVLSFLDQTIFPK-IKSGAFSHVMDHKTNLQEFLQQKGEIGIDYQLVDE 199 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP H F V V G QG +K+AAEQVAA L Sbjct: 200 IGPAHQKAFVVEVLAEGQVLGQGQGKTKKAAEQVAAENAL 239 >gi|282856664|ref|ZP_06265932.1| ribonuclease III [Pyramidobacter piscolens W5455] gi|282585513|gb|EFB90813.1| ribonuclease III [Pyramidobacter piscolens W5455] Length = 231 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 115/214 (53%), Gaps = 9/214 (4%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSAK 67 ++RIGY F++ +LLE+ALTHSS +H + ERLEFLGD +L +LIS LF A Sbjct: 16 QRRIGYEFSDPALLEEALTHSSYAHERGVPFWNERLEFLGDAVLEVLISEELFRARPDAS 75 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+++ SLV E S L L + + R M D VE+LI ALY Sbjct: 76 EGQMTRERASLVREEVLSAWGHSLGLDGLLLLGMGQRGSASENMI---GDAVEALIGALY 132 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 LDGG+E A F+++ R + + + D K+ LQ + G P Y++ R GP+HDP Sbjct: 133 LDGGLEQARAFLNR----RPRGAAREQLDPKSRLQILCQERNGPAPYYELLERKGPEHDP 188 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F + G A+G S++AAEQ AA LK Sbjct: 189 IFIARALLDGRELARGRGTSRKAAEQAAARAALK 222 >gi|253578969|ref|ZP_04856240.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849912|gb|EES77871.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 227 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/206 (36%), Positives = 106/206 (51%), Gaps = 7/206 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ IGY F N+ L +ALTHSS ++ + S ERLEFLGD +L L+ S L+ F Sbjct: 8 LEEIIGYHFKNKHYLTQALTHSSYANEKKLGKLGSNERLEFLGDAVLELISSDYLYARFT 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ + SLV + + ARE L F+ + SI +D E+L+ Sbjct: 68 QIPEGELTKKRASLVCEPSLAYCAREFGLPQFLLLGKGEDMTGGRNRDSIVSDATEALLG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP-EYKVTFRSGP 183 A+YLDGG A FV + ++ + D+KT LQE G P EY +T GP Sbjct: 128 AIYLDGGFANAKEFVLNFI-LNDIEHKQLFYDSKTILQEIVQEN-GTQPVEYILTKEEGP 185 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 DH+ FTV ++G QG +K+ Sbjct: 186 DHNKNFTVEARVNGKVMGQGSGHTKK 211 >gi|110598670|ref|ZP_01386935.1| Ribonuclease III [Chlorobium ferrooxidans DSM 13031] gi|110339723|gb|EAT58233.1| Ribonuclease III [Chlorobium ferrooxidans DSM 13031] Length = 270 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 116/231 (50%), Gaps = 15/231 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLI 55 +SA + L + +G +N L + ALTH S+ H ES +RLEFLGD +LGLLI Sbjct: 31 LSAETIAYLRRLVGEPASNLLLYQTALTHRSVVHDPATQHLVESNQRLEFLGDSVLGLLI 90 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S LF F + EGELS + +V+ ++ + A ++LA ++ ++ + S Sbjct: 91 SDYLFRTFPGSAEGELSSNRSKIVNRKSLAGFAASMNLADYLLTGESADRNKITSSDSAL 150 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKF 169 AD ESL A+YLD GI A F+ K+ L+ FR + K+ L E+ ++ Sbjct: 151 ADAFESLTGAIYLDKGILAAENFIRKH----VLEHENFRMIVEAEHNYKSRLIEYTQSRH 206 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P Y V G +H+ +FTV V S G K+ AEQ+AA E L Sbjct: 207 LPMPVYSVLEECGAEHEKQFTVGVSCSDRHLGSGTARRKKDAEQLAAKEAL 257 >gi|295698532|ref|YP_003603187.1| ribonuclease III [Candidatus Riesia pediculicola USDA] gi|291157177|gb|ADD79622.1| ribonuclease III [Candidatus Riesia pediculicola USDA] Length = 227 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 12/223 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+K IGY F + L ++LTH S + S+ E RLEFLGD IL L+IS L++ F S E Sbjct: 2 LQKNIGYRFNHLDFLYQSLTHRSTNLSHNE---RLEFLGDSILNLIISKFLYDEFLSKNE 58 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GE+S ++LV T S +A +L + SFI + K+ SI ++ +E++I A++L Sbjct: 59 GEMSRTRSNLVKEGTLSDIANQLGIGSFINLGLGEIKNHGFLKRSILSNALEAIIGAIFL 118 Query: 129 DGG--IEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D G I+ + +++ A + + +D KT+LQE P+Y++ G D Sbjct: 119 DSGSNIKTIENVIMNWYRNHADLINLSRDEKDPKTKLQEHLQKFHLPLPKYELLKSVGYD 178 Query: 185 HDPRFTVVVEISGLAPAQ-----GMDCSKRAAEQVAAAEVLKR 222 H+ +FT+V ++ G + G + AE++AA + + Sbjct: 179 HEKQFTIVCKVFGFRKSDHFITIGTGKKYKEAEKLAAKHMFDK 221 >gi|157150981|ref|YP_001450082.1| ribonuclease III [Streptococcus gordonii str. Challis substr. CH1] gi|189043362|sp|A8AWC2|RNC_STRGC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157075775|gb|ABV10458.1| Ribonuclease III (RNase III) [Streptococcus gordonii str. Challis substr. CH1] Length = 232 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 113/218 (51%), Gaps = 7/218 (3%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 R G F + SLLE A TH+S ++ ++ ERLEFLGD +L L+IS LF + Sbjct: 11 RFGLVFKDVSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIISEYLFEKYPKRP 70 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+L+ +++V E+ + +R+ FI++ K +I D+ E+ + AL Sbjct: 71 EGDLTKLRSTIVREESLAGFSRDCQFDRFIKLGKGEEKSGGRERETILGDLFEAFLGALL 130 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD G+EV F+ + + +++G F + D KT+LQE + V Y+V SGP H Sbjct: 131 LDKGLEVVKNFIYQVMIPK-VEAGDFEQVTDYKTKLQELLQSNGDVEILYQVVSESGPAH 189 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V V + G +G SK+ AEQ AA ++E Sbjct: 190 AKNFEVSVSVDGRLVGKGQGRSKKLAEQEAAKNAFEKE 227 >gi|154148336|ref|YP_001407136.1| ribonuclease III [Campylobacter hominis ATCC BAA-381] gi|153804345|gb|ABS51352.1| ribonuclease III [Campylobacter hominis ATCC BAA-381] Length = 223 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +EK +GY F N + L+ ALTH S + ++ ERLEFLGD ++ L+++ L+ F +E Sbjct: 4 IEKILGYKFKNENHLKLALTHKSFKGA--QNNERLEFLGDAVMDLIVAEYLYEKFRHTQE 61 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV+ ++ ++ AR+L + + +S + SI +D E++ A+YL Sbjct: 62 GDLSKLRAALVNEKSFAKFARKLKIGENLFLSLGEEHNGGRKKDSILSDAFEAIFGAIYL 121 Query: 129 DGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 + G+EV + K ++ + K +D KTELQE A F +TP YK+ +GPDH Sbjct: 122 ESGLEVCKSLSIKILEEIFPQIDKSLYKDFKTELQEITQANFALTPTYKLLSATGPDHKK 181 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQ 213 F + V A SK+ AEQ Sbjct: 182 EFEMAVFFDDKKIAAAKGKSKKEAEQ 207 >gi|54310187|ref|YP_131207.1| ribonuclease III [Photobacterium profundum SS9] gi|81615006|sp|Q6LMS2|RNC_PHOPR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|46914628|emb|CAG21405.1| putative ribonuclease III [Photobacterium profundum SS9] Length = 224 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 108/204 (52%), Gaps = 6/204 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++R+GY F + L+ +LTH S + + E RLEFLGD IL +I+ L++ F E Sbjct: 8 LQRRLGYQFNSSELMTLSLTHRSANGKHNE---RLEFLGDSILSFVIADDLYHRFPHVDE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV +T +++ RE +L ++ + K SI AD VE++I A+YL Sbjct: 65 GDMSRMRATLVRGKTLAELGREFELGDYLLLGPGELKSGGFRRDSILADCVEAIIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D E + +++ R ++ G ++D KT LQE + P Y VT G H+ Sbjct: 125 DSDTEQVRKVILSWYQSRLETIQPGINQKDPKTRLQECLQGRRLALPAYTVTKVHGEAHN 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKR 209 FTV E++GL P G S+R Sbjct: 185 QEFTVQCEVTGLDKPVIGKGSSRR 208 >gi|229588601|ref|YP_002870720.1| ribonuclease III [Pseudomonas fluorescens SBW25] gi|259491960|sp|C3K6Y7|RNC_PSEFS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|229360467|emb|CAY47324.1| ribonuclease III [Pseudomonas fluorescens SBW25] Length = 229 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 116/221 (52%), Gaps = 8/221 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF F A+E Sbjct: 8 LERQLGYTFKDQELMVLALTHRSFAGR---NNERLEFLGDAILNFVAGEALFERFPQARE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS LV ET + +AR L ++R+ S K SI AD +E+LI A+YL Sbjct: 65 GQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEALIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D G+E A V W ++S +D KT LQE+ ++ P Y+V G H Sbjct: 125 DAGMEAAKERVTA-WLTSEIESLTLVDTNKDPKTRLQEFLQSRGCELPRYEVVDIQGEPH 183 Query: 186 DPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 F V EI+ L ++G S+R AEQVAAA L G+ Sbjct: 184 CRVFFVECEITLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224 >gi|22125197|ref|NP_668620.1| ribonuclease III [Yersinia pestis KIM 10] gi|45442304|ref|NP_993843.1| ribonuclease III [Yersinia pestis biovar Microtus str. 91001] gi|51597206|ref|YP_071397.1| ribonuclease III [Yersinia pseudotuberculosis IP 32953] gi|108808446|ref|YP_652362.1| ribonuclease III [Yersinia pestis Antiqua] gi|108811369|ref|YP_647136.1| ribonuclease III [Yersinia pestis Nepal516] gi|145598837|ref|YP_001162913.1| ribonuclease III [Yersinia pestis Pestoides F] gi|149365390|ref|ZP_01887425.1| ribonuclease III [Yersinia pestis CA88-4125] gi|153949383|ref|YP_001400117.1| ribonuclease III [Yersinia pseudotuberculosis IP 31758] gi|162419239|ref|YP_001607935.1| ribonuclease III [Yersinia pestis Angola] gi|165925157|ref|ZP_02220989.1| ribonuclease III [Yersinia pestis biovar Orientalis str. F1991016] gi|165937011|ref|ZP_02225576.1| ribonuclease III [Yersinia pestis biovar Orientalis str. IP275] gi|166008358|ref|ZP_02229256.1| ribonuclease III [Yersinia pestis biovar Antiqua str. E1979001] gi|166212532|ref|ZP_02238567.1| ribonuclease III [Yersinia pestis biovar Antiqua str. B42003004] gi|167399049|ref|ZP_02304573.1| ribonuclease III [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421411|ref|ZP_02313164.1| ribonuclease III [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423187|ref|ZP_02314940.1| ribonuclease III [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218929790|ref|YP_002347665.1| ribonuclease III [Yersinia pestis CO92] gi|229838281|ref|ZP_04458440.1| RNase III [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895523|ref|ZP_04510694.1| RNase III [Yersinia pestis Pestoides A] gi|229898845|ref|ZP_04513990.1| RNase III [Yersinia pestis biovar Orientalis str. India 195] gi|229901619|ref|ZP_04516741.1| RNase III [Yersinia pestis Nepal516] gi|270489808|ref|ZP_06206882.1| ribonuclease III [Yersinia pestis KIM D27] gi|284988625|ref|YP_001719940.2| ribonuclease III [Yersinia pseudotuberculosis YPIII] gi|284988628|ref|YP_001873415.2| ribonuclease III [Yersinia pseudotuberculosis PB1/+] gi|22654064|sp|Q8ZD72|RNC_YERPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|73917588|sp|Q667V1|RNC_YERPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122980240|sp|Q1CKE4|RNC_YERPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|123372250|sp|Q1C555|RNC_YERPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043377|sp|A7FFT9|RNC_YERP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043378|sp|A4TKX8|RNC_YERPP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238687295|sp|A9R402|RNC_YERPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|21958062|gb|AAM84871.1|AE013732_3 RNase III, ds RNA [Yersinia pestis KIM 10] gi|45437168|gb|AAS62720.1| ribonuclease III [Yersinia pestis biovar Microtus str. 91001] gi|51590488|emb|CAH22128.1| ribonuclease III [Yersinia pseudotuberculosis IP 32953] gi|108775017|gb|ABG17536.1| RNAse III [Yersinia pestis Nepal516] gi|108780359|gb|ABG14417.1| RNAse III [Yersinia pestis Antiqua] gi|115348401|emb|CAL21337.1| ribonuclease III [Yersinia pestis CO92] gi|145210533|gb|ABP39940.1| RNAse III [Yersinia pestis Pestoides F] gi|149291803|gb|EDM41877.1| ribonuclease III [Yersinia pestis CA88-4125] gi|152960878|gb|ABS48339.1| ribonuclease III [Yersinia pseudotuberculosis IP 31758] gi|162352054|gb|ABX86002.1| ribonuclease III [Yersinia pestis Angola] gi|165914874|gb|EDR33486.1| ribonuclease III [Yersinia pestis biovar Orientalis str. IP275] gi|165922764|gb|EDR39915.1| ribonuclease III [Yersinia pestis biovar Orientalis str. F1991016] gi|165992740|gb|EDR45041.1| ribonuclease III [Yersinia pestis biovar Antiqua str. E1979001] gi|166206463|gb|EDR50943.1| ribonuclease III [Yersinia pestis biovar Antiqua str. B42003004] gi|166960900|gb|EDR56921.1| ribonuclease III [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051553|gb|EDR62961.1| ribonuclease III [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057357|gb|EDR67103.1| ribonuclease III [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681548|gb|EEO77642.1| RNase III [Yersinia pestis Nepal516] gi|229688393|gb|EEO80464.1| RNase III [Yersinia pestis biovar Orientalis str. India 195] gi|229694647|gb|EEO84694.1| RNase III [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701329|gb|EEO89357.1| RNase III [Yersinia pestis Pestoides A] gi|270338312|gb|EFA49089.1| ribonuclease III [Yersinia pestis KIM D27] gi|320016075|gb|ADV99646.1| RNase III [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 226 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIHTIERLILEWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL P G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRKAEQAAAEQALKQ 222 >gi|169335334|ref|ZP_02862527.1| hypothetical protein ANASTE_01746 [Anaerofustis stercorihominis DSM 17244] gi|169258072|gb|EDS72038.1| hypothetical protein ANASTE_01746 [Anaerofustis stercorihominis DSM 17244] Length = 227 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 115/220 (52%), Gaps = 8/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+++GY F ++ L++ ALTHSS S+ + ++ ERLEFLGD +L L + L+ Sbjct: 6 LEQKLGYEFKDKELIKVALTHSSKSNENKTLQNNERLEFLGDAVLDLCVGAYLYKTLPGK 65 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 KEG L+ +V A++ + +LDL FI + + +I AD E+++ A+ Sbjct: 66 KEGVLTKLRALIVCADSLFSASDKLDLGEFIMLGKGEMHSGGKYKKNIIADCFEAVLGAI 125 Query: 127 YLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 YLD E +A T + K+ SG D KT LQE+ H+K Y++ G Sbjct: 126 YLDSDYEKVSTIALTLLSDVIKKAI--SGNLTYDYKTLLQEYIHSKNIKDFSYELVQIKG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P+HD FT V I+ QG +K+ +EQ AA LK+ Sbjct: 184 PEHDQIFTSKVIINNKDMGQGEGKNKKESEQHAALNTLKK 223 >gi|311068114|ref|YP_003973037.1| ribonuclease III [Bacillus atrophaeus 1942] gi|310868631|gb|ADP32106.1| ribonuclease III [Bacillus atrophaeus 1942] Length = 249 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 111/224 (49%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS LF Sbjct: 19 QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLF 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+L+ ++V + +A EL + + ++ ADV E Sbjct: 79 AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 + I ALYLD G+E +F+ Y + + G F D K++LQE+ T EYK+ Sbjct: 139 AFIGALYLDQGLEPVESFLKVYVFPK-INDGAFSHVMDFKSQLQEFVQRDGKGTLEYKIQ 197 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F +V + G A G SK+ AEQ AA E L + Sbjct: 198 NEKGPAHNREFEAIVSLKGEALGIGNGRSKKEAEQHAAQEALAK 241 >gi|85860141|ref|YP_462343.1| ribonuclease III [Syntrophus aciditrophicus SB] gi|85723232|gb|ABC78175.1| ribonuclease III [Syntrophus aciditrophicus SB] Length = 240 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 117/219 (53%), Gaps = 8/219 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSS-ISHSYQESY---ERLEFLGDRILGLLISTLLFNHFD 64 LE + AF + +LL+ AL H S ++ + S+ ERLEFLGD +L L IS LL F Sbjct: 12 LESHLSCAFRDITLLDNALVHRSYVNENPSLSFADNERLEFLGDAVLELCISDLLMKAFP 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS S+V+ + +++A++ + SFI + SI A+ +E++ A Sbjct: 72 DYSEGQLSKLRASVVNEQPLAELAKKCRIGSFILLGKGEESSGGRSKPSILANTMEAITA 131 Query: 125 ALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A FV + + + +S ++ D KT LQE + +F P Y++ Sbjct: 132 AVFLDGGFDRAYEFVRRLFTPLIEEGNRSATYK-DYKTTLQELSQNRFREIPRYRLIGEY 190 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDHD F + I G+ G SK+ AEQ AA + L Sbjct: 191 GPDHDKLFESGLSIPGIIETTGKGKSKKEAEQHAAHKAL 229 >gi|257466297|ref|ZP_05630608.1| ribonuclease III [Fusobacterium gonidiaformans ATCC 25563] Length = 232 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 10/226 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LE RI Y F +++LL+ AL H S + ++ + E+LE LGD +LGL+++ L+ + Sbjct: 8 LEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLVVAEYLYQKYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 KEG L+ + VS + ++R+L + ++ +S SI DV E+++ Sbjct: 68 EEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSILGDVFEAILG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G A +V + K F D KT LQE+ K+ P+Y + G Sbjct: 128 AIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDIPKYTLVGEEG 187 Query: 183 PDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI-W 226 PDH F + V+I + +A A+G +K+ AEQ+AA ++ K G+ W Sbjct: 188 PDHRKLFEMQVQIQNNIAKAKG--TNKKVAEQMAAKQLCKELGVKW 231 >gi|329121261|ref|ZP_08249888.1| ribonuclease III [Dialister micraerophilus DSM 19965] gi|327470195|gb|EGF15658.1| ribonuclease III [Dialister micraerophilus DSM 19965] Length = 239 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/210 (34%), Positives = 106/210 (50%), Gaps = 6/210 (2%) Query: 19 NRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 N LL ALTH+S ++ ++++ ERLEFLGD +L L++ LF + EGEL+ Sbjct: 22 NHELLNIALTHTSYANEHKKNKEHDNERLEFLGDAVLDLIVGEYLFRKYPLWSEGELTKA 81 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 S V C++++ L++ ++ + K SI D ESLI A+YLD G EV Sbjct: 82 KASAVCKPACAEISTRLNVGKYLLLGKGEEKSGGRTRVSILGDAFESLIGAIYLDIGYEV 141 Query: 135 AGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 FV K+ ++ + G + +D KT+LQE V Y V GPDHD + Sbjct: 142 TFDFVIKHLEKFLDLIMQGDYDKDYKTDLQEILQQNGDVEICYNVIHDEGPDHDKTIWMS 201 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V G G+ SK+ A Q AA E ++R Sbjct: 202 VTADGKYLGSGIGKSKKQAAQRAAKEAIER 231 >gi|225374436|ref|ZP_03751657.1| hypothetical protein ROSEINA2194_00051 [Roseburia inulinivorans DSM 16841] gi|225213674|gb|EEG96028.1| hypothetical protein ROSEINA2194_00051 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L+ +IGY F LL +ALTHSS ++ ERLEFLGD +L ++ S L+ + Sbjct: 7 LQDKIGYEFKQEKLLRQALTHSSFANEKHLRKHSDNERLEFLGDAVLEIVSSDFLYKAYP 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ SLV T + RE++L ++ + SI +D +E++I Sbjct: 67 DKSEGDLTKLRASLVCEPTLAICTREMELGKYLFLGKGENLTGGRNRNSILSDALEAVIG 126 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG E A TF+ K+ ++ K D KT LQE + Y++ GPD Sbjct: 127 AIYLDGGFEHAKTFIHKFI-LTDIEHKKLFYDCKTSLQEVVQGHYEEELNYRLISEEGPD 185 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209 HD RF+V I G+ +K+ Sbjct: 186 HDKRFSVEARIGERVIGTGIGHTKK 210 >gi|322436776|ref|YP_004218988.1| ribonuclease III [Acidobacterium sp. MP5ACTX9] gi|321164503|gb|ADW70208.1| ribonuclease III [Acidobacterium sp. MP5ACTX9] Length = 268 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/231 (35%), Positives = 120/231 (51%), Gaps = 26/231 (11%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES------------YERLEFLGDRILGLLIS 56 LE +G+ FA +LL ALTH S + ++ E+LEF+GD LGLL + Sbjct: 19 LETLLGHRFARPNLLTLALTHRSFVYDSGQTAPENDLADPARDNEQLEFVGDAALGLLAA 78 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L F +++EGEL+ S+VS + +V LDL ++R+ K+ ++ A Sbjct: 79 ESLCRRFPASREGELTRLRASIVSRKHLGEVGTRLDLGRWLRLGHTAEKNDGRRNAALFA 138 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-----GKFRR------DAKTELQEWA 165 + VE+LIAALYLDGG+EVA FV+ A+ + G+ R D K+ LQE Sbjct: 139 NAVEALIAALYLDGGLEVARRFVEDEIVSPAIPALEQSLGEGERFAGAVGDHKSALQEML 198 Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQ 213 A+ PEY++ SGPDH F+V V I G A AQ +K+ A+Q Sbjct: 199 QAEGLGRPEYRLIAESGPDHKRLFSVEVLIEGPDSEAIAQAEGPTKKQAQQ 249 >gi|255019675|ref|ZP_05291754.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756] gi|254970898|gb|EET28381.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756] Length = 232 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/218 (36%), Positives = 109/218 (50%), Gaps = 9/218 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++ IGY F + LL +ALTH S + E RLEFLGD L +++ L+ F E Sbjct: 7 LQQAIGYVFQDEVLLRQALTHRSAGAQHNE---RLEFLGDAALNFVVAAELYARFPKVSE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLA-SFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G LS LV ET +QVA E+ LA S I +LR + SI+AD +E++I A Y Sbjct: 64 GNLSRMRARLVREETLAQVAGEIALADSLILGPGELRSG-GARRDSIRADALEAIIGAAY 122 Query: 128 LDGGIEVAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LDGG A V + AL + RD KT LQE+ + P Y + G Sbjct: 123 LDGGFAAAQGIVRQLIVPLMTEALGDEEL-RDPKTRLQEFLQGQGKPLPSYSLVEEKGQA 181 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H+ RF + G+ S+R AEQ AA ++L++ Sbjct: 182 HERRFVARCSVQGVPATDAEAGSRRKAEQQAAQQMLEQ 219 >gi|15639796|ref|NP_219246.1| ribonuclease III (rnc) [Treponema pallidum subsp. pallidum str. Nichols] gi|189026034|ref|YP_001933806.1| ribonuclease III [Treponema pallidum subsp. pallidum SS14] gi|6094109|sp|O83787|RNC_TREPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238689343|sp|B2S448|RNC_TREPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|3323122|gb|AAC65778.1| ribonuclease III (rnc) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018609|gb|ACD71227.1| ribonuclease III [Treponema pallidum subsp. pallidum SS14] gi|291060165|gb|ADD72900.1| ribonuclease III [Treponema pallidum subsp. pallidum str. Chicago] Length = 254 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 109/215 (50%), Gaps = 7/215 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 L++ +G F + + L++AL+H S+ H ER+EFLGD +LG + + L+ Sbjct: 27 LQETLGVKFRDPTALDQALSHRSLFSSKEDHCGVRHNERMEFLGDAVLGAVAAACLYRAL 86 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG+L+ LVS +T S +A L + ++ + +I AD E++I Sbjct: 87 PDSHEGDLAKTKAVLVSTDTLSDIALSLRIDHYLLLGKGEELSGGRHKKAILADATEAVI 146 Query: 124 AALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AL+LD G + A FV + + R ++ D K+ LQ AH ++ PEY V R+ Sbjct: 147 GALFLDSGFKAAERFVLRLLLPRVRPIREKNLHHDYKSTLQVLAHQRYRSKPEYTVVKRT 206 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH RF V V + G SK++AEQ AA Sbjct: 207 GPDHSVRFWVDVTVGDARFGPGYGTSKKSAEQCAA 241 >gi|313892546|ref|ZP_07826133.1| ribonuclease III [Dialister microaerophilus UPII 345-E] gi|313118943|gb|EFR42148.1| ribonuclease III [Dialister microaerophilus UPII 345-E] Length = 239 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/210 (34%), Positives = 106/210 (50%), Gaps = 6/210 (2%) Query: 19 NRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 N LL ALTH+S ++ ++++ ERLEFLGD +L L++ LF + EGEL+ Sbjct: 22 NHELLNIALTHTSYANEHKKNKEHDNERLEFLGDAVLDLIVGEYLFRKYPLWSEGELTKA 81 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 S V C++++ L++ ++ + K SI D ESLI A+YLD G EV Sbjct: 82 KASAVCKPACAEISTRLNVGKYLLLGKGEEKSGGRTRVSILGDAFESLIGAIYLDIGYEV 141 Query: 135 AGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 FV K+ ++ + G + +D KT+LQE V Y V GPDHD + Sbjct: 142 TFDFVIKHLEKFLDLIMQGDYDKDYKTDLQEILQQNGDVEICYNVIHDEGPDHDKTIWMS 201 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V G G+ SK+ A Q AA E ++R Sbjct: 202 VTADGKYLGSGIGKSKKQAAQRAAKEAIER 231 >gi|291522183|emb|CBK80476.1| RNAse III [Coprococcus catus GD/7] Length = 233 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/212 (33%), Positives = 114/212 (53%), Gaps = 5/212 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L+++I Y F + +LL ALTHSS ++ ++ ERLEFLGD +L ++ S LF +F Sbjct: 10 LQQKIDYQFKDENLLFTALTHSSYANEHKLHKIHHNERLEFLGDAVLEVVSSDFLFKNFP 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG++S + SLV T + AR++ L ++ + SI +D +E++I Sbjct: 70 DMAEGQMSKKRASLVCEPTLAYCARQIGLGKYLMLGKGEDMGGGRNRDSILSDALEAVIG 129 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 ++YLDGGIE AG+F+ + F +D+KT LQE Y+V +GP+ Sbjct: 130 SIYLDGGIEQAGSFIMTHVLNDIEHKAMF-QDSKTILQELLQKDHKDPITYEVVDMTGPE 188 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 H+ F + V++ +G +K+AA Q AA Sbjct: 189 HNRMFVMQVKLGDRVIGKGSGRTKQAAGQEAA 220 >gi|159029006|emb|CAO87467.1| rnc [Microcystis aeruginosa PCC 7806] Length = 226 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/216 (33%), Positives = 105/216 (48%), Gaps = 11/216 (5%) Query: 17 FANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F N LL +ALTH S + E+ ERLEFLGD IL L+ LL+ + + E EL+ Sbjct: 7 FQNALLLTQALTHRSYVNEQSELTENNERLEFLGDAILAFLVGELLYQKYPAMNEAELTR 66 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 ++LV E +Q+ E+ L +R+ KD ++ AD E++I A YLD G+ Sbjct: 67 LRSNLVKEEQLAQLGIEIGLGELMRLGKGAIKDRGRSNPTLLADTFEAIIGAYYLDSGLN 126 Query: 134 VAGTF-------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + V + + +S F DAK Q+WA A F PEY + +GP H Sbjct: 127 AVKNYLHGLFIPVASHLVSQQSESPSF-IDAKNLFQQWALANFASNPEYAIIDVTGPPHA 185 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 FT V ++ L G K+ A + AA + LKR Sbjct: 186 REFTAEVRVNNLLYGTGKGKRKQDATKAAAEDALKR 221 >gi|123441363|ref|YP_001005350.1| ribonuclease III [Yersinia enterocolitica subsp. enterocolitica 8081] gi|189043376|sp|A1JKK3|RNC_YERE8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122088324|emb|CAL11115.1| ribonuclease III [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 226 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIHTIERLILAWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL P G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRKAEQAAAEQALKQ 222 >gi|332162691|ref|YP_004299268.1| ribonuclease III [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|33332418|gb|AAQ11416.1| ribonuclease III [Yersinia enterocolitica] gi|318606796|emb|CBY28294.1| ribonuclease III [Yersinia enterocolitica subsp. palearctica Y11] gi|325666921|gb|ADZ43565.1| ribonuclease III [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 226 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQDLLLQALTHRSASSKHNE---RLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIHTIERLILAWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G HD FT+ ++SGL P G S+R AEQ AA + LK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRKAEQAAAEQALKQ 222 >gi|315917454|ref|ZP_07913694.1| ribonuclease III [Fusobacterium gonidiaformans ATCC 25563] gi|313691329|gb|EFS28164.1| ribonuclease III [Fusobacterium gonidiaformans ATCC 25563] Length = 235 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 10/226 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LE RI Y F +++LL+ AL H S + ++ + E+LE LGD +LGL+++ L+ + Sbjct: 11 LEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLVVAEYLYQKYP 70 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 KEG L+ + VS + ++R+L + ++ +S SI DV E+++ Sbjct: 71 EEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSILGDVFEAILG 130 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G A +V + K F D KT LQE+ K+ P+Y + G Sbjct: 131 AIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDIPKYTLVGEEG 190 Query: 183 PDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI-W 226 PDH F + V+I + +A A+G +K+ AEQ+AA ++ K G+ W Sbjct: 191 PDHRKLFEMQVQIQNNIAKAKG--TNKKVAEQMAAKQLCKELGVKW 234 >gi|305674324|ref|YP_003865996.1| ribonuclease III [Bacillus subtilis subsp. spizizenii str. W23] gi|305412568|gb|ADM37687.1| ribonuclease III [Bacillus subtilis subsp. spizizenii str. W23] Length = 249 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 111/224 (49%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS LF Sbjct: 19 QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLF 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+L+ ++V + +A EL + + ++ ADV E Sbjct: 79 AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 + I ALYLD G+E +F+ Y + + G F D K++LQE+ + EYK+T Sbjct: 139 AFIGALYLDQGLEPVESFLKVYVFPK-INDGAFSHVMDFKSQLQEYVQRDGKGSLEYKIT 197 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F +V + G G SK+ AEQ AA E L + Sbjct: 198 NEKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAK 241 >gi|210633204|ref|ZP_03297720.1| hypothetical protein COLSTE_01633 [Collinsella stercoris DSM 13279] gi|210159209|gb|EEA90180.1| hypothetical protein COLSTE_01633 [Collinsella stercoris DSM 13279] Length = 241 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/182 (39%), Positives = 94/182 (51%), Gaps = 3/182 (1%) Query: 14 GYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 G AF + SLL A+TH S SYERLEFLGD ILG +++ LF + EG+L Sbjct: 15 GRAFNDTSLLRSAITHPSAVEGEPVSASYERLEFLGDSILGSVVALSLFKTYGDFDEGKL 74 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + SLVS T S V REL + I + + + M S +V E+L+ ALYLDGG Sbjct: 75 TRLKVSLVSGATLSDVGRELGIDQVIILGASEQGTGARGMHSALENVYEALVGALYLDGG 134 Query: 132 IEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E A F+ + K A + + + K+ LQE + P YKV GP H+P FT Sbjct: 135 WEAAEAFIMRTLKPHLATERAEHPSNPKSFLQECVQSDHMEAPSYKVVGEEGPAHEPTFT 194 Query: 191 VV 192 V Sbjct: 195 AV 196 >gi|52424423|ref|YP_087560.1| ribonuclease III [Mannheimia succiniciproducens MBEL55E] gi|81387548|sp|Q65VN5|RNC_MANSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|52306475|gb|AAU36975.1| Rnc protein [Mannheimia succiniciproducens MBEL55E] Length = 224 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/216 (34%), Positives = 113/216 (52%), Gaps = 8/216 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+++I Y F + +LL++ALTH S + + E RLEFLGD IL I+ L++ F E Sbjct: 7 LQRQISYEFKDITLLKQALTHRSAATKHNE---RLEFLGDAILNYTIADALYHQFPKCNE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +LV T + +AR+ L ++ + K SI AD VE++I A+ L Sbjct: 64 GELSRMRATLVREPTLAILARQFKLGEYMALGHGELKSGGFRRESILADCVEAIIGAISL 123 Query: 129 DGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D + V+ T + +W + R +K G+ ++D KT LQE+ P Y V G H Sbjct: 124 DSSL-VSATQITLHWYEKLLREIKPGENQKDPKTRLQEYLQGHRLALPTYDVKDIKGEAH 182 Query: 186 DPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220 FT+ + L G+ S+R AEQ AA ++L Sbjct: 183 CQTFTIECHVPNLDRTFIGVGSSRRKAEQAAAEQIL 218 >gi|225419776|ref|ZP_03762079.1| hypothetical protein CLOSTASPAR_06114 [Clostridium asparagiforme DSM 15981] gi|225041580|gb|EEG51826.1| hypothetical protein CLOSTASPAR_06114 [Clostridium asparagiforme DSM 15981] Length = 232 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/212 (32%), Positives = 112/212 (52%), Gaps = 5/212 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFD 64 LE+ I Y F L +ALTHSS ++ ++ ++ ERLEFLGD +L ++ S L++ ++ Sbjct: 8 LERTICYQFKEHGLFVQALTHSSYANEHRWNHSRCNERLEFLGDAVLEIVTSDFLYHKYE 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ S+V T + A ++ L ++ + S+ +D +E+LI Sbjct: 68 DLPEGDLTKIRASIVCEPTLAYCAGDISLGEYLLLGKGEEATGGRSRNSVVSDAMEALIG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG A F+ ++ ++ + D+KT LQE ++ Y++ GPD Sbjct: 128 AIYLDGGFANAKEFIHRFILND-IEHKQLFYDSKTILQEMVQSRSSEGLSYEILREEGPD 186 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 H+ F V I G +G +K+AAEQVAA Sbjct: 187 HNKSFEVCARIGGAEIGRGTGRTKKAAEQVAA 218 >gi|257452427|ref|ZP_05617726.1| ribonuclease III [Fusobacterium sp. 3_1_5R] Length = 232 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 118/224 (52%), Gaps = 9/224 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LE RI Y F +++LL+ AL H S + ++ + E+LE LGD +LGL+++ L+ + Sbjct: 8 LEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLVVAEYLYQKYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 KEG L+ + VS + ++R+L + ++ +S SI DV E+++ Sbjct: 68 EEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSILGDVFEAILG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G A +V + K F D KT LQE+ K+ P+Y + G Sbjct: 128 AIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDIPKYTLVGEEG 187 Query: 183 PDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PDH F + V+I + +A A+G +K+ AEQ+AA ++ K G+ Sbjct: 188 PDHRKLFEMQVQIQNNIAKAKG--TNKKIAEQMAAKQLCKELGV 229 >gi|260892849|ref|YP_003238946.1| ribonuclease III [Ammonifex degensii KC4] gi|260864990|gb|ACX52096.1| ribonuclease III [Ammonifex degensii KC4] Length = 235 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 112/219 (51%), Gaps = 10/219 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L+ ++G ++ LL ALTH S + H E +RLEFLGD +L L++S L+ F Sbjct: 4 AKLKDKLGISWKEEKLLRLALTHPSYAYEHPGVEHNQRLEFLGDSVLSLVVSDYLYRTFP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ ++V + ++VA EL + + + K S+ AD E+L+ Sbjct: 64 EKSEGELTRLRAAVVCEASLARVAEELGIGEALLLGRGEEKSGGRKRPSLLADAFEALLG 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPE---YKVTF 179 A+YLD G+EVA F + + + G+ RD KTELQE +PE Y+V Sbjct: 124 AIYLDQGLEVASAFALHLLRPVLQDVLEGRVERDYKTELQELLQKG---SPEKIVYEVLQ 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 GPDH RF V V G +G SK+ AEQ AA E Sbjct: 181 EEGPDHAKRFLVGVYYQGKCLGRGEGRSKKEAEQRAARE 219 >gi|183221945|ref|YP_001839941.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912013|ref|YP_001963568.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776689|gb|ABZ94990.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780367|gb|ABZ98665.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 242 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/212 (33%), Positives = 111/212 (52%), Gaps = 7/212 (3%) Query: 16 AFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 +F + SLL A H S ++ + Y ERLEFLGD +LG+L + L+ KEG L Sbjct: 27 SFKDISLLHLAFVHRSFANEDSDRYLSDNERLEFLGDSVLGILAAEYLYKSLPKGKEGIL 86 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + + +VSA +++AR F+ + K+ ++QAD E+ + ALYLD G Sbjct: 87 AKLKSKMVSAPAIAKLARFYRFPDFLLLGKG-EKEKGEANLNLQADCFEAFLGALYLDQG 145 Query: 132 IEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 + F+ +++ ++ ++S + +D KT LQE+ K+ PEY + GPDHD F Sbjct: 146 LNSCRIFLTPHFQTMEKGVESAEETKDYKTILQEYCQKKWKKLPEYILLKEEGPDHDKDF 205 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +V V + G +KR AEQ+AA L+ Sbjct: 206 SVSVSCENYFQSNGDGKNKRRAEQMAAKAALR 237 >gi|332284936|ref|YP_004416847.1| hypothetical protein PT7_1683 [Pusillimonas sp. T7-7] gi|330428889|gb|AEC20223.1| hypothetical protein PT7_1683 [Pusillimonas sp. T7-7] Length = 252 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 111/213 (52%), Gaps = 6/213 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +TL+ + Y F + SLLE+ALTH S S + E RLEFLGD +L ++++LLF F Sbjct: 5 NTLQAALDYQFGDASLLEQALTHRSHSGPHNE---RLEFLGDSVLNFVVASLLFVRFPKI 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS +LV + +A L+L+ ++R+ K SI AD +E+L AA+ Sbjct: 62 DEGDLSRLRANLVKQAALADIAGRLNLSQYLRLGEGELKSGGFRRPSILADALEALFAAV 121 Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLDGG + A + + ++ + + +D KT LQE A+ P Y V G Sbjct: 122 YLDGGFDAAQQVIQRQYETILDNVDAKTLGKDPKTLLQELLQARKLDLPAYTVVATHGAA 181 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAA 216 H+ F V +I L S+RAAEQ AA Sbjct: 182 HNQLFEVECQIPVLDIKVSAGGASRRAAEQSAA 214 >gi|90412086|ref|ZP_01220093.1| ribonuclease III [Photobacterium profundum 3TCK] gi|90327064|gb|EAS43443.1| ribonuclease III [Photobacterium profundum 3TCK] Length = 224 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 109/204 (53%), Gaps = 6/204 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++++GY F + L+ +LTH S + ++ E RLEFLGD IL +I+ L++ F E Sbjct: 8 LQRKLGYQFNSTELMTLSLTHRSANGTHNE---RLEFLGDSILSFVIADDLYHRFPHVDE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV +T +++ RE +L ++ + K SI AD VE++I A+YL Sbjct: 65 GDMSRMRATLVRGKTLAELGREFELGDYLLLGPGELKSGGFRRDSILADCVEAIIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D E + +++ R ++ G ++D KT LQE + P Y VT G H+ Sbjct: 125 DSDTEQVRKVILSWYQSRLETIQPGINQKDPKTRLQECLQGRRLALPAYTVTKVHGEAHN 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKR 209 FTV E++GL P G S+R Sbjct: 185 QEFTVQCEVTGLDKPVIGKGSSRR 208 >gi|298242449|ref|ZP_06966256.1| ribonuclease III [Ktedonobacter racemifer DSM 44963] gi|297555503|gb|EFH89367.1| ribonuclease III [Ktedonobacter racemifer DSM 44963] Length = 227 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 9/227 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61 + LE + F N +LL ALTH S + + S ERLEFLGD IL L+ + L+ Sbjct: 2 HEELEAILDIQFHNPNLLTLALTHRSYIYEAAGEGRSSNERLEFLGDSILALISADFLYR 61 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EGEL+ LV ET + AR+++L++F+ + + + A E+ Sbjct: 62 TFPDLAEGELTDARAVLVRTETLANFARDINLSNFLLMGKGEQHSGGG--QRVLASAFEA 119 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A+YLD G++ TF+ K + A + + +D K+ QE A A G+TP Y++ Sbjct: 120 LLGAIYLDQGLDAVQTFLLKRLEPLAHTIVRNRLFKDNKSLFQELAQAHDGITPSYRLVN 179 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 + GP H+ FT+ V + +G +K++AEQ AA + L G W Sbjct: 180 QEGPSHNREFTIEVLLGEQVAGRGQGRNKQSAEQEAARQALLSRG-W 225 >gi|330877435|gb|EGH11584.1| ribonuclease III [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 229 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 116/222 (52%), Gaps = 6/222 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+++ Y F ++ L+ ALTH S + + ERLEFLGD IL + LF F A Sbjct: 6 SRLERQLDYTFKDQELMILALTHRSFAG---RNNERLEFLGDAILNFVAGEALFERFPQA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS LV ET + +AR DL ++R+ S K SI AD +E+LI A+ Sbjct: 63 REGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G+E A V + +L +D KT LQE+ ++ P Y+V G Sbjct: 123 YLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVDIQGEP 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 H F V EI+ L ++G S+R AEQVAAA L G+ Sbjct: 183 HCRTFFVECEINLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224 >gi|254283270|ref|ZP_04958238.1| ribonuclease III [gamma proteobacterium NOR51-B] gi|219679473|gb|EED35822.1| ribonuclease III [gamma proteobacterium NOR51-B] Length = 222 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 113/222 (50%), Gaps = 7/222 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 +R +LE+ IGY F + +LL++ALTH S S + + ERLEFLGD ++ +++ LF F Sbjct: 1 MRRQSLEQAIGYHFRDSTLLQRALTHRSASRA---NNERLEFLGDSVINHIVAEALFLKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EG+L+ LV E + +A L+LA + + + RK SI AD VE++ Sbjct: 58 PDADEGQLTRLRAILVRGEYLAGLAHGLELADALILGAGERKSGGRQRRSILADAVEAIA 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ +D V + W L +D KT LQEW A+ P Y + Sbjct: 118 GAMLIDSEFATVRKVVLQ-WYHEGLDEITLDAVKDPKTRLQEWLQARGEELPSYDLVQVD 176 Query: 182 GPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 G DH FTV +++G A G S+R AEQ AA L+R Sbjct: 177 GEDHRQSFTVTCQLAGRDLALTGRGSSRRRAEQAAAKATLER 218 >gi|222529151|ref|YP_002573033.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725] gi|222455998|gb|ACM60260.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725] Length = 222 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/216 (34%), Positives = 122/216 (56%), Gaps = 9/216 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +EK +GY F +++LL ALTH S +HS + YERLEFLGD L L++S LF HF E Sbjct: 4 IEKALGYKFMDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELVVSKYLFVHFPELSE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GEL+ ++V ++T S++A +L+L + I + + SI DVVE++ A+++ Sbjct: 64 GELTNIRAAVVCSQTLSKIAEKLNLKNHIIFGKREKMEKFHENKSILTDVVEAIFGAIFI 123 Query: 129 DGGIE-VAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 + G E + V+ K + Q+A+ +GK D KT+LQE+ K + K+ ++ Sbjct: 124 ESGFEKLEKIIVNLLKPYIQKAV-AGKLFYDYKTKLQEFVQKK----GQKKIVYKDYEII 178 Query: 186 DPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + F + I G ++G SK+ A+Q AA + L Sbjct: 179 EKKYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFL 214 >gi|256827009|ref|YP_003150968.1| ribonuclease III [Cryptobacterium curtum DSM 15641] gi|256583152|gb|ACU94286.1| ribonuclease III [Cryptobacterium curtum DSM 15641] Length = 279 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 108/211 (51%), Gaps = 4/211 (1%) Query: 13 IGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +GY F++ L A+TH S + SYERLEFLGD ILG +++ F+ F EG Sbjct: 18 LGYRFSDEHFLLSAITHPSAVEGMPVKFSYERLEFLGDSILGAVVADAAFHRFPDLDEGG 77 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ SLV+ + SQVA EL A FI + S +V E+++AALYLDG Sbjct: 78 LTRIKVSLVAGSSLSQVANELGFADFIIFGQSEAGTGRRGLHSALENVYEAVVAALYLDG 137 Query: 131 GIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 G+EVA +F V ++ + + K+ LQE G+TP YK+ GP HD F Sbjct: 138 GMEVARSFIVQTLLGYMSIDMAREPENPKSALQEKLQED-GITPTYKLIETQGPPHDRTF 196 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V A A+G+ +K+ AE AA L Sbjct: 197 VAAVYAGLQALARGVGRTKKEAESKAAQTAL 227 >gi|332981630|ref|YP_004463071.1| ribonuclease III [Mahella australiensis 50-1 BON] gi|332699308|gb|AEE96249.1| ribonuclease III [Mahella australiensis 50-1 BON] Length = 228 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 113/220 (51%), Gaps = 4/220 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNH 62 R L +GY F + + L++ALTHSS ++ + Y ERLE LGD +L ++I+ LF Sbjct: 3 RLKELMDLLGYRFNDINKLDEALTHSSYAYEHGLDYYNERLELLGDSVLNIIITDYLFVT 62 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG LS +++VS + +VA ++L S++ +S + S AD VE++ Sbjct: 63 YPELSEGNLSKLRSNIVSEKPLYKVAAAMNLGSYLLLSRGEKLSHGDMRPSTLADTVEAI 122 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLDGG + A FV ++ D K+ELQE +Y++ Sbjct: 123 IGAVYLDGGFDAAKVFVLSLLAPIIEETAAISNFNDYKSELQERLQIDGYSDIKYEIIRE 182 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDHD F V++ G +G SK+ AEQ AA + L Sbjct: 183 EGPDHDKMFFAEVKVDGKPVGRGSGRSKKDAEQKAAQQAL 222 >gi|317058970|ref|ZP_07923455.1| ribonuclease III [Fusobacterium sp. 3_1_5R] gi|313684646|gb|EFS21481.1| ribonuclease III [Fusobacterium sp. 3_1_5R] Length = 235 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 118/224 (52%), Gaps = 9/224 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LE RI Y F +++LL+ AL H S + ++ + E+LE LGD +LGL+++ L+ + Sbjct: 11 LEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLVVAEYLYQKYP 70 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 KEG L+ + VS + ++R+L + ++ +S SI DV E+++ Sbjct: 71 EEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSILGDVFEAILG 130 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G A +V + K F D KT LQE+ K+ P+Y + G Sbjct: 131 AIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDIPKYTLVGEEG 190 Query: 183 PDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PDH F + V+I + +A A+G +K+ AEQ+AA ++ K G+ Sbjct: 191 PDHRKLFEMQVQIQNNIAKAKG--TNKKIAEQMAAKQLCKELGV 232 >gi|331091059|ref|ZP_08339901.1| ribonuclease III [Lachnospiraceae bacterium 2_1_46FAA] gi|330405281|gb|EGG84817.1| ribonuclease III [Lachnospiraceae bacterium 2_1_46FAA] Length = 231 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LEK+IGY F LL +A+ HSS ++ E ERLEFLGD +L L+ S LF Sbjct: 8 LEKKIGYKFQRFDLLCQAMRHSSYANEKHMEKNECNERLEFLGDAVLELVSSEFLFFENK 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ S+V + + AREL+L S++ + + S+ +D +E+LI Sbjct: 68 KMPEGELTRTRASIVCEPSLAFCARELNLGSYLLLGKGEENTGGRYRESLTSDALEALIG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG A F+ ++ L+ K D+KT LQE F EY + GPD Sbjct: 128 AIYLDGGFASAKEFIHRFV-LNDLEHKKLFFDSKTILQEIVQGNFNEPIEYTLLKEEGPD 186 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209 H+ F + V I G +K+ Sbjct: 187 HNKSFFISVSIGNEVYGNGKGRTKK 211 >gi|189219126|ref|YP_001939767.1| Ribonuclease III [Methylacidiphilum infernorum V4] gi|189185984|gb|ACD83169.1| Ribonuclease III [Methylacidiphilum infernorum V4] Length = 247 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 119/232 (51%), Gaps = 16/232 (6%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES-------YERLEFLGDRILGLLIS 56 ++ LEK++GYAF N LLE+ALTH S + ES ++RLEFLGD +LGL ++ Sbjct: 1 MQLEELEKKMGYAFKNPQLLEEALTHPSF---FVESIRVNKGDFQRLEFLGDAVLGLAVT 57 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F S EG+L+ LVS + +A L++ ++R+ K+ S A Sbjct: 58 EKLFQLFPSFDEGKLTKLRARLVSRKNLCSLASLLEIGKYLRLGKGEEKNQGRTKPSNLA 117 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFR----RDAKTELQEWAHAKFG 170 + +ES+I ALYLDGG + A +F+ + + L+ R ++K LQE+ K Sbjct: 118 NALESVIGALYLDGGWDRAKSFIFELFNPLFMELEKDPMRFVEHENSKGLLQEFLQKKGT 177 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P Y++ SG H+ + V V +G SK+ AE AA E ++ Sbjct: 178 ELPIYRIVLESGEAHNKWYEVEVSWKNQVLGKGSGKSKKEAELRAAKEAFEK 229 >gi|237732553|ref|ZP_04563034.1| ribonuclease III [Citrobacter sp. 30_2] gi|226908092|gb|EEH94010.1| ribonuclease III [Citrobacter sp. 30_2] Length = 204 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/203 (35%), Positives = 109/203 (53%), Gaps = 6/203 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +++ALTH S S + E RLEFLGD IL +I+ L++ F EG++S +LV Sbjct: 1 MQQALTHRSASSKHNE---RLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGN 57 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 T +++ARE DL +R+ K SI AD VE+LI ++LD I+ + + Sbjct: 58 TLAELAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEQLILNW 117 Query: 143 WKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA- 199 ++ R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL+ Sbjct: 118 YQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSE 177 Query: 200 PAQGMDCSKRAAEQVAAAEVLKR 222 P G S+R AEQ AA + LK+ Sbjct: 178 PVVGTGSSRRKAEQAAAEQALKK 200 >gi|260583707|ref|ZP_05851455.1| ribonuclease III [Granulicatella elegans ATCC 700633] gi|260158333|gb|EEW93401.1| ribonuclease III [Granulicatella elegans ATCC 700633] Length = 234 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/212 (33%), Positives = 113/212 (53%), Gaps = 7/212 (3%) Query: 17 FANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N + L++ALTHSS ++ +++ ER+EFLGD +L L IS L+ + KEGEL+ Sbjct: 19 FKNENYLKEALTHSSYANEHKDCKGIYNERIEFLGDAVLELFISNWLYRQMPTKKEGELT 78 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +V E+ S +A+E +L ++ + R ++ DV E+ + A+YLD G Sbjct: 79 KLRAQIVCEESLSTLAKECELDKYLLLGKGERASKGHENPAVLCDVFEAFVGAIYLDQGF 138 Query: 133 EVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E A F+ + + +K G+F D KTELQE+ V Y++ GP H +T Sbjct: 139 EGASQFLTQVIISK-IKDGRFTLVGDFKTELQEYFQRNGNVNIRYELLKEEGPSHARYYT 197 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V V ++ G +K+AAEQ++A L++ Sbjct: 198 VQVHVNDKGYEIGEGKTKKAAEQLSARRTLEK 229 >gi|57234229|ref|YP_181741.1| ribonuclease III [Dehalococcoides ethenogenes 195] gi|90101623|sp|Q3Z7Q8|RNC_DEHE1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|57224677|gb|AAW39734.1| ribonuclease III [Dehalococcoides ethenogenes 195] Length = 237 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 121/226 (53%), Gaps = 8/226 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSS----ISHSYQESYERLEFLGDRILGLLISTLL 59 L + LEK +G F N SLLE+AL H+S + S ER+EFLGD +LG++ + L Sbjct: 2 LDLTELEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRL 61 Query: 60 FNHFDSAKEGELSVRFNS-LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 ++ F +EG+L+ RF S LV E+ +VA ++L ++ + F + A Sbjct: 62 YHDFPDIQEGDLT-RFRSLLVRRESLVRVALGINLGKYLYLGRGEDASKGRFKPANLAGA 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E+++AA+YLD GI+ + + +K +++ D K+ LQE A+F +TP Y+ Sbjct: 121 FEAVLAAIYLDKGIDATREVIFRLFKTEMERVQTLSSNIDYKSRLQELVQAQFQLTPRYR 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + SGP+H+ F V A+G SK+ AE AA E L++ Sbjct: 181 IIDFSGPEHNHLFIAEVYTEDKVLAEGSGRSKKEAETSAAKEALQQ 226 >gi|313623280|gb|EFR93523.1| ribonuclease III [Listeria innocua FSL J1-023] Length = 229 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 7/218 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F N LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 S I ALYLD GI+ TF+++ + + +G + + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPK-IDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +GP H+ F V ++G +G +K+ AEQ AA Sbjct: 182 GETGPAHNKSFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219 >gi|163790810|ref|ZP_02185235.1| Ribonuclease (RNase III) [Carnobacterium sp. AT7] gi|159873878|gb|EDP67957.1| Ribonuclease (RNase III) [Carnobacterium sp. AT7] Length = 231 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 114/220 (51%), Gaps = 7/220 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+ + G F + S LE+A THSS + ++ + ER+EFLGD +L L +S L+ Sbjct: 7 THLKTKFGLVFQDLSYLEEAFTHSSYVNEHRNLKLKDNERIEFLGDAVLELTVSRFLYEL 66 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + + EG+L+ ++V + SQ A+E + FIR+ + ++ D+ ES Sbjct: 67 YPNVPEGKLTRLRATIVCEASFSQFAKEYEFDQFIRLGKGEERMNGRKRPALLCDLFESF 126 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + ALYLD G++ F+++ + +KSG F D KT LQE+ K + EY + Sbjct: 127 VGALYLDQGLDGVLFFLEQTIFPK-IKSGAFSHVMDHKTNLQEFLQQKGEIEIEYNLVDE 185 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP H F V V G QG +K+AAEQVAA L Sbjct: 186 IGPAHQKAFVVEVLAEGQLLGQGQGKTKKAAEQVAAENAL 225 >gi|237746716|ref|ZP_04577196.1| ribonuclease III [Oxalobacter formigenes HOxBLS] gi|229378067|gb|EEO28158.1| ribonuclease III [Oxalobacter formigenes HOxBLS] Length = 273 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 109/215 (50%), Gaps = 6/215 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ RIGY F + +LLE A+TH S S + E RLEFLGD +L + + L+ + + E Sbjct: 12 LQDRIGYTFHDAALLETAMTHRSYSSHHNE---RLEFLGDSLLNCVTAINLYERYAALNE 68 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS +SLV + ++A +L+L+ F+R+ K SI AD +E+L A++L Sbjct: 69 GSLSRLRSSLVRQQALYEIACKLELSRFLRLGEGELKAGGFKRPSILADAMEALFGAVFL 128 Query: 129 DGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G E + + + + L + +DAKT+LQE+ PEY V G H+ Sbjct: 129 DAGFETVKRVITRLFADMMKELDPETYGKDAKTQLQEYLQGHKMALPEYHVVATRGAAHN 188 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220 F V I G S+RA EQ AA + L Sbjct: 189 QEFEVECVIGKFDIHVYGTGSSRRAGEQEAARKAL 223 >gi|257066163|ref|YP_003152419.1| ribonuclease III [Anaerococcus prevotii DSM 20548] gi|256798043|gb|ACV28698.1| ribonuclease III [Anaerococcus prevotii DSM 20548] Length = 239 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 110/202 (54%), Gaps = 6/202 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 E +IGY F ++ L++ A THSS ++ + +S ERLEFLGD IL +++S +LF H+ Sbjct: 14 FENKIGYTFNDKDLIDVAFTHSSYTNEVKGKKKSNERLEFLGDSILDMIVSEVLFKHYSM 73 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG L+ + LV + ++ + ++ +F+ + R+ ++AD E++ AA Sbjct: 74 KPEGWLTKTRSRLVCTSSFAKACEKFEMTTFLNFGNGERQGGGELKKHVKADTFEAVCAA 133 Query: 126 LYLDGGIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLD + F+ + +K+ AL+ D KT+LQE+ +AK +Y + G Sbjct: 134 IYLDSSYDNLFKFLKENYKEEALEIINDDSIFNDYKTKLQEYHNAKDRKILKYVLVKEEG 193 Query: 183 PDHDPRFTVVVEISGLAPAQGM 204 P+H+ FT+ V++ A G+ Sbjct: 194 PEHEKTFTMAVKLGNKVLAHGV 215 >gi|299821773|ref|ZP_07053661.1| ribonuclease III [Listeria grayi DSM 20601] gi|299817438|gb|EFI84674.1| ribonuclease III [Listeria grayi DSM 20601] Length = 230 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F N LL++A THSS + +++ ERLEFLGD +L L +S LF Sbjct: 3 KWEELQESVGFTFENVGLLQEAFTHSSYVNEHRKEKLNDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+L+ ++V + + A + + +IR+ + K ++ ADV E Sbjct: 63 QKYPNLAEGQLTKMRAAIVCEPSLVEFAENIHFSKYIRLGNGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 S I ALYLD G++ F+++ + + +G F D KT+LQE V +Y + Sbjct: 123 SFIGALYLDNGLKNVIRFLERVIFPK-IDTGAFLETVDHKTQLQEIVQRDRDVLIQYDIL 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGP H F V ++G +G +K+ AEQ AA E + + Sbjct: 182 EESGPAHSKAFEAQVVVNGQMLGRGEGRTKKQAEQNAAKEAINK 225 >gi|296127821|ref|YP_003635073.1| ribonuclease III [Brachyspira murdochii DSM 12563] gi|296019637|gb|ADG72874.1| ribonuclease III [Brachyspira murdochii DSM 12563] Length = 246 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/213 (33%), Positives = 113/213 (53%), Gaps = 5/213 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDSAKEG 69 I Y F N+S L +A+TH + ++ ++ +RLEFLGD +L L+IS LF ++++KEG Sbjct: 17 IKYEFRNKSYLLEAITHRTYANESKKKMKYNQRLEFLGDSVLSLIISDYLFKKYNTSKEG 76 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 LS +SLVS ++ + +++EL L FI + + ++ D+ E+++ A+YLD Sbjct: 77 LLSKVKSSLVSQKSLADISKELKLGDFILLGHGEEVSGGRYRDNMLEDLFEAIVGAIYLD 136 Query: 130 GGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GI A FV K +K R L F +D KT QE K +P YK ++ Sbjct: 137 SGINNAAQFVMKAYKNRLNNLDIENFDKDYKTIFQELIQKKHKTSPVYKSYEYHDENNHE 196 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F V ++ + G+ SK+ AE AA + L Sbjct: 197 MFKSEVYVNDKNFSSGIGKSKKEAETEAAKKAL 229 >gi|297626608|ref|YP_003688371.1| ribonuclease III [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922373|emb|CBL56945.1| Ribonuclease III [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 240 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 116/222 (52%), Gaps = 9/222 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 R++ L K +G + LL ALTH S ++ + + ERLEFLGD +LG+ ++ L+ H Sbjct: 10 RFAELIKELGVPL-DAELLGLALTHRSYAYEHGQIPHNERLEFLGDSVLGINVTDYLYRH 68 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ ++VS+ + ++VAR L + +++ TSI AD E+L Sbjct: 69 FPDYAEGRLAKLRAAVVSSVSLAEVARSLGIGQLVKLGHGELTTGGRDKTSILADTTEAL 128 Query: 123 IAALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 I A+Y+ A FV + RA+K G D KT LQE A A PEY+++ Sbjct: 129 IGAIYMT-DPSGAAKFVHHIFDPLVDRAVKMGA-GLDWKTSLQEIAAAMESDPPEYRIS- 185 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +GPDHD RFT V + G GM +K+ AEQ AA + Sbjct: 186 ETGPDHDKRFTAVALVDGRTFDPGMGHNKKQAEQHAAENAFR 227 >gi|28210930|ref|NP_781874.1| ribonuclease III [Clostridium tetani E88] gi|73917577|sp|Q895M9|RNC_CLOTE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28203369|gb|AAO35811.1| ribonuclease III [Clostridium tetani E88] Length = 235 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/217 (34%), Positives = 115/217 (52%), Gaps = 6/217 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L+ +I F N LL ALTHSS ++ + + ERLEFLGD +L L+I+ LF ++ Sbjct: 10 LQNKIEIKFENIKLLHIALTHSSYANEKKRIQYNERLEFLGDSVLQLVITEYLFMNYKDK 69 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS + +V + +A+ L+L +I++S SI AD VE+LIA++ Sbjct: 70 SEGELSKKRALIVCENSLFSIAKNLELGEYIKMSKGEELTGGRERISILADAVEALIASI 129 Query: 127 YLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD GI+V F+ K + ++A+K + D KT+LQE + Y + GP Sbjct: 130 YLDKGIDVVREFILKNFYNIVEKAMKD-EIILDYKTKLQEIIQKDGDIQINYILIKHEGP 188 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H +F V+I G+ SK+ +EQ AA + + Sbjct: 189 PHRRKFYTEVKIKDNVLGYGIGYSKKESEQNAAKKAI 225 >gi|118594601|ref|ZP_01551948.1| ribonuclease III [Methylophilales bacterium HTCC2181] gi|118440379|gb|EAV47006.1| ribonuclease III [Methylophilales bacterium HTCC2181] Length = 243 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 114/219 (52%), Gaps = 6/219 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ + +E +G+ F +++L++ ALTH S + E+ ERLEFLGD IL +++ LL+ Sbjct: 15 MNSNQIEQIESILGHTFKDKALIKIALTHRS---AKGENNERLEFLGDGILNFIVAELLY 71 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+LS + LV T +A+ L + F+ + K SI AD +E Sbjct: 72 VRFQQLSEGDLSRLRSQLVKESTLCDIAKNLTIGDFLLLGEGELKSAGWRRPSILADSLE 131 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD GI +F+++ + + + K +D K+ LQE+ K PEY V Sbjct: 132 AIIAAIYLDDGIGKVKSFIERRFNEHIITIDPNKIHKDDKSLLQEFLQGKKIAIPEYTVI 191 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAA 216 G H F V I L + G S++ AEQ AA Sbjct: 192 EIEGEPHAQVFEVKCRIPKLNIEKIGKGPSRKIAEQNAA 230 >gi|78189616|ref|YP_379954.1| ribonuclease III [Chlorobium chlorochromatii CaD3] gi|90101617|sp|Q3AQ14|RNC_CHLCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|78171815|gb|ABB28911.1| RNAse III [Chlorobium chlorochromatii CaD3] Length = 248 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 114/222 (51%), Gaps = 10/222 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI------SHSYQESYERLEFLGDRILGLLISTLLFNH 62 L+ IG N L + ALTH S+ SH + ES +RLEFLGD +LGLLIS LF + Sbjct: 9 LQTLIGSLDGNARLYQTALTHRSVIGNTALSH-HNESNQRLEFLGDAVLGLLISHFLFQN 67 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F ++ EG+LS +V++++ + AR + L + + S AD ESL Sbjct: 68 FPASAEGDLSKTRAKIVNSKSLACFARSIGLGEHLLLGESAAHYNIRDSESALADAFESL 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLD G++ A FVDK+ S ++ K+ L E++ A P Y V Sbjct: 128 IGAIYLDKGLDAAYGFVDKHIIHHQSFSAIVASEQNYKSCLIEYSQAHHVAAPVYTVIAE 187 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G +HD FTV V + + G K+ AEQ+AA E ++R Sbjct: 188 HGAEHDKEFTVEVSCNNIKGC-GTARRKKDAEQLAAKEAMER 228 >gi|330502445|ref|YP_004379314.1| ribonuclease III [Pseudomonas mendocina NK-01] gi|328916731|gb|AEB57562.1| ribonuclease III [Pseudomonas mendocina NK-01] Length = 229 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 115/222 (51%), Gaps = 6/222 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+++GY+F ++ L+ ALTH S + + ERLEFLGD IL + LF F A Sbjct: 6 SRLERKLGYSFKDQDLMVLALTHRSFAGR---NNERLEFLGDAILNFVAGEALFERFPQA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS LV ET + +AR +L ++R+ S K SI AD +E+LI A+ Sbjct: 63 REGQLSRLRARLVKGETLAVLARGFELGEYLRLGSGELKSGGFRRESILADALEALIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G+E A V + L +D KT LQE+ ++ P Y+V G Sbjct: 123 YLDAGMEAARERVLDWLTGELDGLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDVQGEP 182 Query: 185 HDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225 H F V +++ L G S+R AEQVAAA L G+ Sbjct: 183 HCRTFMVECQVALLNEKTLGQGGSRRIAEQVAAAAALIALGV 224 >gi|300691972|ref|YP_003752967.1| ribonuclease III (RNase III) [Ralstonia solanacearum PSI07] gi|299079032|emb|CBJ51694.1| Ribonuclease III (RNase III) [Ralstonia solanacearum PSI07] Length = 256 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 110/212 (51%), Gaps = 8/212 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++R+GY F+ LL++ALTH S S + E RLEFLGD IL ++ +L+ F E Sbjct: 6 LQQRLGYRFSKPELLQQALTHRSHSAMHNE---RLEFLGDSILNCAVADMLYGMFGKLDE 62 Query: 69 GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G+LS VR N LV + ++A+ L L +R+ K SI AD +E++ A++ Sbjct: 63 GDLSRVRAN-LVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIFGAVF 121 Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDGG + A T + K + + +DAKT LQE+ P+Y V G H Sbjct: 122 LDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATHGAAH 181 Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216 + +F V I L G S+RAAEQ AA Sbjct: 182 NQQFEVECTIPKLEIRVSGSGASRRAAEQSAA 213 >gi|83748443|ref|ZP_00945465.1| Ribonuclease III [Ralstonia solanacearum UW551] gi|207725215|ref|YP_002255611.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum MolK2] gi|207743590|ref|YP_002259982.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum IPO1609] gi|83724854|gb|EAP72010.1| Ribonuclease III [Ralstonia solanacearum UW551] gi|206590449|emb|CAQ37411.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum MolK2] gi|206594989|emb|CAQ61916.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum IPO1609] Length = 256 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 110/212 (51%), Gaps = 8/212 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++R+GY F+ LL++ALTH S S + E RLEFLGD IL ++ +L+ F E Sbjct: 6 LQQRLGYRFSKPELLQQALTHRSHSAMHNE---RLEFLGDSILNCAVADMLYGMFGKLDE 62 Query: 69 GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G+LS VR N LV + ++A+ L L +R+ K SI AD +E++ A++ Sbjct: 63 GDLSRVRAN-LVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIFGAVF 121 Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDGG + A T + K + + +DAKT LQE+ P+Y V G H Sbjct: 122 LDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATHGAAH 181 Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216 + +F V I L G S+RAAEQ AA Sbjct: 182 NQQFEVECTIPKLEIRVSGSGASRRAAEQSAA 213 >gi|262282633|ref|ZP_06060401.1| ribonuclease III [Streptococcus sp. 2_1_36FAA] gi|262261924|gb|EEY80622.1| ribonuclease III [Streptococcus sp. 2_1_36FAA] Length = 232 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 113/218 (51%), Gaps = 7/218 (3%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 R G F + SLLE A TH+S ++ ++ ERLEFLGD +L L+IS LF + Sbjct: 11 RFGLVFKDVSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIISEYLFEKYPKRP 70 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+L+ +++V E+ + +R+ FI++ K +I D+ E+ + AL Sbjct: 71 EGDLTKLRSTIVREESLAGFSRDCQFDLFIKLGKGEEKSGGRERETILGDLFEAFLGALL 130 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD G+E+ F+ + + +++G F + D KT+LQE + V Y+V SGP H Sbjct: 131 LDKGLEIVKDFIYQVMIPK-VEAGDFEQVTDYKTKLQELLQSNGDVEILYQVVSESGPAH 189 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V V + G +G SK+ AEQ AA ++E Sbjct: 190 AKNFEVSVSVDGRLVGKGQGRSKKLAEQEAAKNAFEKE 227 >gi|118602619|ref|YP_903834.1| ribonuclease III [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567558|gb|ABL02363.1| RNAse III [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 221 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 118/221 (53%), Gaps = 14/221 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+K+I Y F + SLL+ ALTH S+ + + ERLEFLGD ILG++IS L+ F + E Sbjct: 4 LQKKINYQFKDLSLLKLALTHCSMG---KNNNERLEFLGDSILGVIISKELYQRFPNIDE 60 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS + LV +T +Q++ L+L++ + + K SIQAD +E++ A+ L Sbjct: 61 GKLSRLRSHLVRDQTLTQLSAGLELSNSLILGFGELKSGGYRRESIQADAIEAIFGAVLL 120 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D E T V ++ + +D KT+LQE+ V P+Y++T G DH+ Sbjct: 121 DSNFETTSTVVLDLFEMLLNNISPDDSLKDPKTQLQEYLQKYGNVLPKYELTDTIGKDHN 180 Query: 187 PRFTVVVEISGLAPAQGMDCSKRA-----AEQVAAAEVLKR 222 FT I+ L Q + S+ A AEQ A +LK+ Sbjct: 181 AIFT----INCLLKDQNLQVSQSAKSIKKAEQSCAQTLLKK 217 >gi|300869947|ref|YP_003784818.1| ribonuclease III [Brachyspira pilosicoli 95/1000] gi|300687646|gb|ADK30317.1| ribonuclease III [Brachyspira pilosicoli 95/1000] Length = 229 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 114/215 (53%), Gaps = 5/215 (2%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSAK 67 EK + Y+F N++ L +A+TH + ++ + +RLEFLGD +L L+IS ++ +++ K Sbjct: 10 EKVLQYSFKNKNYLLEAITHRTFANENGNMKYNQRLEFLGDSVLSLIISEHIYKEYNNVK 69 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS LVS T + ++R+L L F+ + ++ D+ E++I A+Y Sbjct: 70 EGKLSKIKAYLVSQNTLANISRKLKLGDFLLLGKGEEASGGRERDNMLEDLFEAIIGAIY 129 Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD +E FV + +K L F +D KT LQE K+ +TP YK ++ + Sbjct: 130 LDSNLENTKNFVMRVYKDILNKLDINNFDKDYKTILQEIVQKKYKITPTYK-SYEYNEND 188 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F V V + A G+ SK+ AE AA + L Sbjct: 189 NIMFKVEVYVKTKKYASGIGKSKKEAEINAAKKAL 223 >gi|157362928|ref|YP_001469695.1| ribonuclease III [Thermotoga lettingae TMO] gi|189043371|sp|A8F397|RNC_THELT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157313532|gb|ABV32631.1| Ribonuclease III [Thermotoga lettingae TMO] Length = 238 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 126/229 (55%), Gaps = 25/229 (10%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTLLFNHF 63 ++IGY F LL AL HSS +H + ES ERLEFLGD ++ LL++ L+ F Sbjct: 14 EKIGYRFYEPELLYNALCHSSYAHEQKQRGRKDVESNERLEFLGDAVIDLLLAEYLYLEF 73 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFI------RVSSDLRKDVCSFMTSIQAD 117 A EG ++ ++ S E +Q+AR+++L ++ VSS +D S+ AD Sbjct: 74 PEASEGVMAKVKAAIASEEALAQIARDINLGRYMFLGRGEEVSSGRERD------SLLAD 127 Query: 118 VVESLIAALYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 ++E+++AA+Y+DGG+ +V ++ KY K+ + GK D KT LQE A++ P Sbjct: 128 MLEAVVAAVYIDGGLTAVKKVFLSYFAKYAKE--VVEGKIVFDYKTSLQEITQARYRKLP 185 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 EY + GP H +FTV + +SG A G S + AE+ AA +++ Sbjct: 186 EYVLVNEKGPSHMKKFTVELRLSGKLIAVGEGPSIKEAEKEAARRAIEK 234 >gi|169830829|ref|YP_001716811.1| ribonuclease III [Candidatus Desulforudis audaxviator MP104C] gi|169637673|gb|ACA59179.1| Ribonuclease III [Candidatus Desulforudis audaxviator MP104C] Length = 235 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 109/212 (51%), Gaps = 4/212 (1%) Query: 13 IGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 IG + + LL +ALTHSS S H +RLEFLGD +L +++S L+ A EG+ Sbjct: 14 IGLFWRDPDLLLEALTHSSFSYEHPGHRHNQRLEFLGDAVLEIVVSEHLYRRLPDAPEGD 73 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ ++V + VARE++L +++R+ S+ AD +E+L+ ALYLD Sbjct: 74 LTKIRAAVVCEPALAHVAREMNLGTYLRMGRGEELSGGRERPSVLADALEALLGALYLDQ 133 Query: 131 GIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G+EVA F + + A +GK D KT LQE + Y + GPDH+ Sbjct: 134 GLEVARWFALQSLEPIISATLAGKGEADYKTRLQELLQKRSPEPLRYVIIKEEGPDHNKL 193 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 FT V G +G +K+ AEQ AA E L Sbjct: 194 FTAGVVYRGKVLGRGTGRTKKEAEQHAAREAL 225 >gi|1389549|dbj|BAA10976.1| ORF3 [Bacillus subtilis] Length = 266 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 111/224 (49%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS LF Sbjct: 19 QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLF 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+L+ ++V + +A EL + + ++ ADV E Sbjct: 79 PKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 + I ALYLD G+E +F+ Y + + G F D K++LQE+ + EYK++ Sbjct: 139 AFIGALYLDQGLEPVESFLKVYVFPK-INDGAFPHVMDFKSQLQEYVQRDGKGSLEYKIS 197 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F +V + G G SK+ AEQ AA E L + Sbjct: 198 NEKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAK 241 >gi|167463674|ref|ZP_02328763.1| ribonuclease III [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382556|ref|ZP_08056436.1| ribonuclease III-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153472|gb|EFX45877.1| ribonuclease III-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 287 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/216 (34%), Positives = 111/216 (51%), Gaps = 7/216 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L+ RIG F N LL +A THSS + ++ + ERLEFLGD +L L++S L+ + Sbjct: 62 LQARIGITFNNVDLLRQAFTHSSYVNEHRITNHKDNERLEFLGDAVLELMVSEHLYFTYP 121 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ S+V + A L+ S++ + ++ AD+ ES I Sbjct: 122 RRAEGELTKLRASIVCEPSLVNFAERLNFGSYVLLGKGEEMTGGRTRPALLADLFESFIG 181 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWA-HAKFGVTPEYKVTFRSG 182 ALYLD G+E F+ K+ GK D KT+LQE+ H G T EY++ G Sbjct: 182 ALYLDQGLEPVRDFLIKHVFPHISNEGKLLVVDYKTQLQEYVQHHNLG-TLEYRIVEERG 240 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 P H+ F V++ G +G+ SK+ AEQ AA++ Sbjct: 241 PAHEREFVAEVQMDGKILGKGVGRSKKEAEQQAASK 276 >gi|225180933|ref|ZP_03734381.1| Ribonuclease III [Dethiobacter alkaliphilus AHT 1] gi|225168414|gb|EEG77217.1| Ribonuclease III [Dethiobacter alkaliphilus AHT 1] Length = 233 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 12/215 (5%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHFDSA 66 K++ NR + +ALTHSS +H + ERLEFLGD +L L+IS LF F Sbjct: 11 KQLNIEPKNREIYIQALTHSSYAHEHNLGSHAHNERLEFLGDAVLELVISEALFKRFPLL 70 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ +V ++ ++A L+L ++R+ S+ AD E+++ A+ Sbjct: 71 PEGKLTRFRAGMVCEDSLFKIANSLELGKYLRLGKGEAASGGRQRPSLLADAFEAMLGAM 130 Query: 127 YLDGGI-----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 YLD G V G F + + G R D KT +QE+ A TPEY++ Sbjct: 131 YLDQGFYVVQETVTGIFAPLFED---MAKGSMRHDYKTLMQEYTQASLATTPEYRIVAEQ 187 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH F + ++ +G SK+ AEQ AA Sbjct: 188 GPDHSKVFVAQLLLNREVYGEGSGRSKKEAEQEAA 222 >gi|116873240|ref|YP_850021.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466444|sp|A0AJR0|RNC_LISW6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116742118|emb|CAK21242.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334] Length = 229 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 116/218 (53%), Gaps = 7/218 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFQDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + +IR+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAIHFSKYIRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 S I ALYLD GI+ TF+++ + + +G++ + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPK-IDAGEYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +GP H+ F V ++G +G +K+ AEQ AA Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219 >gi|89900532|ref|YP_523003.1| ribonuclease III [Rhodoferax ferrireducens T118] gi|122479398|sp|Q21XN1|RNC_RHOFD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|89345269|gb|ABD69472.1| RNAse III [Rhodoferax ferrireducens T118] Length = 228 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 81/216 (37%), Positives = 114/216 (52%), Gaps = 6/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ R+ + F+N LL +ALTH S S + E RLEFLGD +LGL ++ LL+ + E Sbjct: 8 LQARLQHEFSNPGLLTRALTHRSFSLDHNE---RLEFLGDSVLGLAVADLLYERLSTLPE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV +T +A L L IR+ + SI AD +E++I A+YL Sbjct: 65 GDLSRVRANLVKQDTLHHLALGLGLPEVIRLGEGEARSGGHKRPSILADALEAVIGAVYL 124 Query: 129 DGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G VA V + ++ +KS +D KTELQEW + P Y+V G H Sbjct: 125 DAGFAVAQGLVRRLFQAVEIKSDMEAIGKDPKTELQEWLQGRKMNLPLYRVVATLGAAHK 184 Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 F V EI L +G+ S+RA EQ AAA +L+ Sbjct: 185 QTFDVECEIVELNFLERGIGGSRRAGEQAAAAAMLQ 220 >gi|331266250|ref|YP_004325880.1| ribonuclease III [Streptococcus oralis Uo5] gi|326682922|emb|CBZ00539.1| ribonuclease III [Streptococcus oralis Uo5] Length = 232 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 113/222 (50%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+KR FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD + F+ + + +++G F +D KT LQE V Y+VT Sbjct: 126 LGALLLDKDVARVKEFIYQVMIPK-VEAGDFEMIKDYKTHLQELLQVNGDVDIRYQVTSE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 185 TGPAHDKVFDVEVLVEGRSIGKGQGRSKKLAEQEAAKNAVEK 226 >gi|306825115|ref|ZP_07458457.1| ribonuclease III [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432551|gb|EFM35525.1| ribonuclease III [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 232 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 113/222 (50%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+KR FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD + F+ + + +++G F +D KT LQE V Y+VT Sbjct: 126 LGALLLDKDVARVKEFIYQVMIPK-VEAGDFEMIKDYKTHLQELLQVNGDVDIRYQVTSE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226 >gi|293365563|ref|ZP_06612272.1| ribonuclease III [Streptococcus oralis ATCC 35037] gi|315613276|ref|ZP_07888185.1| ribonuclease III [Streptococcus sanguinis ATCC 49296] gi|291315931|gb|EFE56375.1| ribonuclease III [Streptococcus oralis ATCC 35037] gi|315314511|gb|EFU62554.1| ribonuclease III [Streptococcus sanguinis ATCC 49296] Length = 232 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 113/222 (50%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+KR FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD + F+ + + +++G F +D KT LQE V Y+VT Sbjct: 126 LGALLLDKDVARVKEFIYQVMIPK-VEAGDFEMIKDYKTHLQELLQVNGDVDIRYQVTSE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226 >gi|298528053|ref|ZP_07015457.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1] gi|298511705|gb|EFI35607.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1] Length = 232 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 114/218 (52%), Gaps = 6/218 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ +IGY + + LL +ALTHSS ++ + E ERLEFLGD +L L IS +LF F A Sbjct: 5 LQDKIGYRYQDPELLVRALTHSSYANERHMEHNERLEFLGDAVLELCISNVLFFRFPRAP 64 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ +LVS T +++AR L L +I + S+ AD +E+++ A+Y Sbjct: 65 EGHLTRLRAALVSEPTLARLARSLTLGDYIFLGRGEELQGGRDRDSVLADTLEAILGAVY 124 Query: 128 L----DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 L DG E + + R +++ +D K+ LQE F P Y + GP Sbjct: 125 LDSGYDGAFECIAALFEDFIPDR-VEALPVSKDFKSRLQEKTQGLFRARPVYTLIDSYGP 183 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +H+ + V VE+ + M S + AEQ AA++ L+ Sbjct: 184 EHEKIYRVQVELPDGTGIEAMAGSVKKAEQKAASKALE 221 >gi|323700157|ref|ZP_08112069.1| ribonuclease III [Desulfovibrio sp. ND132] gi|323460089|gb|EGB15954.1| ribonuclease III [Desulfovibrio desulfuricans ND132] Length = 227 Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 78/216 (36%), Positives = 114/216 (52%), Gaps = 8/216 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + L+ I + F LE ALTHSS ++ E ERLEFLGD +L L IS F + Sbjct: 4 AALQDCIHHRFGQVKFLETALTHSSFANEQDGFEDNERLEFLGDAVLELCISEEGFKRYP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +A EG+L+ + LV ++ + +AREL+L FIR+ ++ AD E+L+ Sbjct: 64 TAHEGQLTRIRSQLVKEQSLAGIARELELDRFIRLGRGEELQGGRERDALLADAFEALLG 123 Query: 125 ALYLDGGIEVA-GTFVDKY---WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 A++LDGG E A T +D + W RA+ +D K+ LQE A F P Y ++ Sbjct: 124 AVFLDGGFEAARRTILDIFEDQWPARAMLPET--KDYKSRLQEVAQDVFRDRPVYVLSGT 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 SGP+H+ F V V + +G+ S + AEQ AA Sbjct: 182 SGPEHEKLFEVDVTLPNGERFRGLGTSVKRAEQEAA 217 >gi|300814491|ref|ZP_07094752.1| ribonuclease III [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511409|gb|EFK38648.1| ribonuclease III [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 230 Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHF 63 TLEK + Y F N +LL+KALTHSS + +S ERLEFLGD +LGL++ + + Sbjct: 7 TLEKNLNYFFKNHALLDKALTHSSYVNENNLKSFDSNERLEFLGDAVLGLVMGEYYYKKY 66 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EGELS ++ V+ + VA + L I K+ F SI AD E+LI Sbjct: 67 ELYNEGELSKLRSASVNEHALAVVANHIKLGELIHFGKGEIKNGGKFRESILADAFEALI 126 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++LD ++A + ++ + + RD K++LQE+ K T +Y +T GP Sbjct: 127 GAIFLDSSFKIARKVILALFEDIFDEIMLYDRDYKSKLQEFVQ-KDSCTIKYVLTDEIGP 185 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 D+D F+ V ISG +GM +K+ +EQ+AA E LK G Sbjct: 186 DNDKTFSSSVLISGKIYGKGMGKTKKKSEQMAAYEALKVLG 226 >gi|239906016|ref|YP_002952755.1| ribonuclease III [Desulfovibrio magneticus RS-1] gi|239795880|dbj|BAH74869.1| ribonuclease III [Desulfovibrio magneticus RS-1] Length = 243 Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/211 (34%), Positives = 110/211 (52%), Gaps = 9/211 (4%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHFDSAKEG 69 +G+ FA +LL ALTHSS ++ E ERLEFLGD +L L +S LF+ F A EG Sbjct: 22 LGHEFATPALLATALTHSSCANERGEGTRHNERLEFLGDAVLELCVSEELFSLFPEAPEG 81 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 EL++ + LV+ + + +A L LA +R+ S+ +DV E+++ A++LD Sbjct: 82 ELTLLRSQLVNEASLAAMALRLGLAGHVRLGRGEENQGGRSRPSLLSDVFEAVVGAIFLD 141 Query: 130 GGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 GG A FV D W +R + +D K+ LQE+ P Y + +GP+H Sbjct: 142 GGYTAARAFVSRTFDGQWPER--PAAPKIKDFKSRLQEFTQRTHKARPVYALLGSAGPEH 199 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 D RF V + + ++ S + AEQ AA Sbjct: 200 DKRFEVRLTLPCGREILAVEKSVKKAEQQAA 230 >gi|16803845|ref|NP_465330.1| ribonuclease III [Listeria monocytogenes EGD-e] gi|224501394|ref|ZP_03669701.1| ribonuclease III [Listeria monocytogenes FSL R2-561] gi|22654060|sp|Q8Y691|RNC_LISMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|16411259|emb|CAC99883.1| rncS [Listeria monocytogenes EGD-e] Length = 229 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 7/218 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F N LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 S I ALYLD GI+ TF+++ + + +G + + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPK-IDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +GP H+ F V ++G +G +K+ AEQ AA Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219 >gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168] gi|221309468|ref|ZP_03591315.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168] gi|221313793|ref|ZP_03595598.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318717|ref|ZP_03600011.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. JH642] gi|221322988|ref|ZP_03604282.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. SMY] gi|321315359|ref|YP_004207646.1| ribonuclease III [Bacillus subtilis BSn5] gi|7531275|sp|P51833|RNC_BACSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|2633965|emb|CAB13466.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168] gi|291484144|dbj|BAI85219.1| ribonuclease III [Bacillus subtilis subsp. natto BEST195] gi|320021633|gb|ADV96619.1| ribonuclease III [Bacillus subtilis BSn5] Length = 249 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 111/224 (49%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS LF Sbjct: 19 QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLF 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+L+ ++V + +A EL + + ++ ADV E Sbjct: 79 AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 + I ALYLD G+E +F+ Y + + G F D K++LQE+ + EYK++ Sbjct: 139 AFIGALYLDQGLEPVESFLKVYVFPK-INDGAFSHVMDFKSQLQEYVQRDGKGSLEYKIS 197 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F +V + G G SK+ AEQ AA E L + Sbjct: 198 NEKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAK 241 >gi|227513461|ref|ZP_03943510.1| ribonuclease III [Lactobacillus buchneri ATCC 11577] gi|227524604|ref|ZP_03954653.1| ribonuclease III [Lactobacillus hilgardii ATCC 8290] gi|227083334|gb|EEI18646.1| ribonuclease III [Lactobacillus buchneri ATCC 11577] gi|227088279|gb|EEI23591.1| ribonuclease III [Lactobacillus hilgardii ATCC 8290] Length = 236 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 7/209 (3%) Query: 19 NRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 ++ LL++A T +S + +++ YERLEFLGD +L L++S +F + +G L+ Sbjct: 19 DQDLLDEAFTQASYVNEHRDQHLKFYERLEFLGDAVLQLIVSEYIFKRYPKLPQGRLTRL 78 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 ++V+ ++ S ARE +IR+ K S+ D+ ES + ALYLD G +V Sbjct: 79 RAAMVNEQSFSTFARECHFNKYIRLGKGEEKAGARDRDSLLCDIFESFVGALYLDQGKKV 138 Query: 135 AGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 FV + + L G F + D KTELQE A A V +Y++ GPD+D F V Sbjct: 139 VEGFVQQVIFPK-LDEGMFAKFFDHKTELQELAQADGPVDIDYELVDEYGPDNDRLFKVN 197 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V I G+ SK+ AEQ AA E LK Sbjct: 198 VAIDDKLLGVGIGHSKKDAEQRAAQEALK 226 >gi|312622598|ref|YP_004024211.1| ribonuclease iii [Caldicellulosiruptor kronotskyensis 2002] gi|312203065|gb|ADQ46392.1| ribonuclease III [Caldicellulosiruptor kronotskyensis 2002] Length = 222 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/216 (34%), Positives = 119/216 (55%), Gaps = 9/216 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +EK +GY F +++LL ALTH S +HS + YERLEFLGD L L +S LF HF E Sbjct: 4 IEKALGYKFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPELSE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GEL+ ++V ++T S++A +L+L + I + + SI ADVVE++ A+++ Sbjct: 64 GELTNIRAAVVCSQTLSKIAEKLNLKNHIIFGKREKMEKFHENKSILADVVEAIFGAIFI 123 Query: 129 DGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 + G E + K Q+A+ +GK D KT+LQE+ + + K+ ++ Sbjct: 124 ESGFEKLEKIIVNLLKPYIQKAV-AGKLFYDYKTKLQEFVQKE----GQKKIVYKDYEII 178 Query: 186 DPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + F + I G ++G SK+ A+Q AA + L Sbjct: 179 EKKYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFL 214 >gi|224500035|ref|ZP_03668384.1| ribonuclease III [Listeria monocytogenes Finland 1988] gi|254831594|ref|ZP_05236249.1| ribonuclease III [Listeria monocytogenes 10403S] gi|284802251|ref|YP_003414116.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578] gi|284995393|ref|YP_003417161.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923] gi|284057813|gb|ADB68754.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578] gi|284060860|gb|ADB71799.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923] Length = 229 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 7/218 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F N LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 S I ALYLD GI+ TF+++ + + +G + + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPK-IDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +GP H+ F V ++G +G +K+ AEQ AA Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219 >gi|315453268|ref|YP_004073538.1| ribonuclease III [Helicobacter felis ATCC 49179] gi|315132320|emb|CBY82948.1| ribonuclease III [Helicobacter felis ATCC 49179] Length = 225 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 11/223 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++R+ Y F + +LL++ALTH S + ERLEFLGD +L L+++ +L+ F +E Sbjct: 5 LQERLAYHFQDMNLLQQALTHKSTKTPHNN--ERLEFLGDAVLDLVVAEILYARFADLQE 62 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS SLV+ + ++A L L I +S + SI A+ E+L+ A+YL Sbjct: 63 GDLSKMRASLVNEKAFFKLASFLQLQDCILISPAEANNHGHTKPSILANAFEALMGAIYL 122 Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G+E T F+D + +L+S D K+ LQE A+F V P Y + SGPD Sbjct: 123 ESGLEPIKTLMTRFLDHVYPDLSLQSTFM--DYKSALQELTQARFKVVPTYTLKSESGPD 180 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKREG 224 H +F + + I SK+ A+Q+ A + L+ EG Sbjct: 181 HAKQFEMQIFILDKLYGTCTAKSKKEAQQLCAQMAYQQLRMEG 223 >gi|255994063|ref|ZP_05427198.1| ribonuclease III [Eubacterium saphenum ATCC 49989] gi|255993731|gb|EEU03820.1| ribonuclease III [Eubacterium saphenum ATCC 49989] Length = 252 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 119/218 (54%), Gaps = 11/218 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 LE +I Y F++R+LL ALTH S+ + + + +RLE+LGD IL L+I LLF Sbjct: 7 LETKINYKFSDRNLLITALTHVSMLGKVHNMDRKSTNQRLEYLGDAILYLVIGELLFIKR 66 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ +++V+ + S++A++LDL I + S K + +I AD E+L+ Sbjct: 67 PDYDEGNLTKARSNIVNNHSLSEMAKKLDLGRHIEMDSSTEKHMGRRNEAILADTFEALM 126 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTP---EYKVT 178 A++LD G E F++K + +R + +G+ + D KT LQE HA G+T +Y Sbjct: 127 GAIFLDAGYEKTHEFINKLFIKRIEEAATGEAKADYKTRLQECVHA-CGITNYYIKYHTI 185 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 G H F + ++ ++G+ SK+ A+Q AA Sbjct: 186 SEKGDQHCKTFRIGAYLNNTKLSEGVGKSKKEAQQNAA 223 >gi|257126255|ref|YP_003164369.1| ribonuclease III [Leptotrichia buccalis C-1013-b] gi|257050194|gb|ACV39378.1| ribonuclease III [Leptotrichia buccalis C-1013-b] Length = 232 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 118/229 (51%), Gaps = 7/229 (3%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLI 55 M+A + S L K+IGY F N+ LE+ALTH S S+ +++ E+LEFLGD IL L+ Sbjct: 1 MTARKNSKDLIKKIGYEFKNKKYLEEALTHRSYSNEAEKTRRFNNEKLEFLGDAILNLIT 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + +++ + EGEL+ + ++S S +A ++ L ++ +S+ SI Sbjct: 61 TEYIYDLYGKKTEGELAKLKSQIISEPVFSTIASDIKLGEYLYLSNGEIMSGGRNRRSIL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 D E+LI A++ D A K+ K L+ + D KT LQE+ K+ P Sbjct: 121 GDAFEALIGAIFKDSDYYTAKNVALKFLLGKINKLEEIEGTGDYKTILQEFVQGKYKKMP 180 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 EYK+ GPDH+ F + V + G SK+ AE+ AA E L++ Sbjct: 181 EYKLLRTKGPDHNKVFEICVRWNDKIYGIGTGKSKKEAEKHAAKEALEK 229 >gi|282882375|ref|ZP_06291003.1| ribonuclease III [Peptoniphilus lacrimalis 315-B] gi|281297796|gb|EFA90264.1| ribonuclease III [Peptoniphilus lacrimalis 315-B] Length = 230 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHF 63 TLEK + Y F N +LL+KALTHSS + +S ERLEFLGD +LGL++ + + Sbjct: 7 TLEKNLNYFFKNHALLDKALTHSSYVNENNLKSFDSNERLEFLGDAVLGLVMGEYYYKKY 66 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EGELS ++ V+ + VA + L I K+ F SI AD E+LI Sbjct: 67 ELYNEGELSKLRSASVNEHALAVVANHIKLGELIHFGKGEIKNGGKFRESILADAFEALI 126 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++LD ++A + ++ + + RD K++LQE+ K T +Y +T GP Sbjct: 127 GAVFLDSSFKIARKVILALFEDIFDEIMLYDRDYKSKLQEFVQ-KDSCTIKYVLTDEIGP 185 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 D+D F+ V ISG +GM +K+ +EQ+AA E LK G Sbjct: 186 DNDKTFSSSVLISGKIYGKGMGKTKKKSEQMAAYEALKVLG 226 >gi|303326944|ref|ZP_07357386.1| ribonuclease III [Desulfovibrio sp. 3_1_syn3] gi|302862932|gb|EFL85864.1| ribonuclease III [Desulfovibrio sp. 3_1_syn3] Length = 253 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 114/222 (51%), Gaps = 13/222 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDS 65 LE+++G+ FA LL+ ALTHSS ++ Y Q ER EFLGD +L L +S LF F Sbjct: 19 LEEKLGHVFARPELLDLALTHSSWANEYSGGQHHNERQEFLGDAVLELCVSWELFRRFPE 78 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EGEL+ LVS + ++ ARE L S +++ + S+ +DV+E+++AA Sbjct: 79 AREGELTKLRARLVSTVSLAERAREFGLDSLLKLGKGEERQGGRSRDSVLSDVLEAVLAA 138 Query: 126 LYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +Y DGG A V +W + A + R+D KT LQE A F P Y Sbjct: 139 VYEDGGFTAAQAAVAHIFAPHWPRAAGEPQ--RKDYKTRLQEVAQQLFRERPVYVQLASH 196 Query: 182 GPDHDPRFTVVVEISGLAP--AQGMDCSKRAAEQVAAAEVLK 221 GP+H F V + + A G C K AEQ AA + L Sbjct: 197 GPEHAKIFEVSLHLPDGREFTASGTSCKK--AEQEAARQALN 236 >gi|295105981|emb|CBL03524.1| RNAse III [Gordonibacter pamelaeae 7-10-1-b] Length = 281 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 107/213 (50%), Gaps = 4/213 (1%) Query: 15 YAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 Y F + LL A+TH S + S + SYERLEFLGD ILG +++ + F+ F EG L+ Sbjct: 20 YRFDSEHLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVAAIAFHRFHDLDEGGLT 79 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +LVS + S VA L A I S + S +V E+++AALYLDGGI Sbjct: 80 RIKVALVSGASLSDVADRLGFADVIVFGSSETGTGKRGLHSALENVYEAVVAALYLDGGI 139 Query: 133 EVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 A FV++ R +L + + K+ LQE G+TP YK+ GP HD F Sbjct: 140 GAAQEFVERTLIPRMSLDMAREPENPKSALQEKLQED-GITPTYKLVETQGPPHDRTFVA 198 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V A+G +K+ AE AA L R G Sbjct: 199 QVFAGTQGLARGTGRTKKEAESQAAKSTLARLG 231 >gi|218960589|ref|YP_001740364.1| dsRNA-specific ribonuclease [Candidatus Cloacamonas acidaminovorans] gi|167729246|emb|CAO80157.1| dsRNA-specific ribonuclease [Candidatus Cloacamonas acidaminovorans] Length = 255 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 8/227 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLLF 60 S L+K+I Y F + +LL ALTH S H + E +ER+EFLGD ILG ++S LF Sbjct: 29 SQLQKKIDYTFHDPTLLYAALTHKSYLHRHFEDHKTPSPFERMEFLGDSILGFIVSKELF 88 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +EG+LS + +VS + A+ +DL ++ +S + ++ + SI +D +E Sbjct: 89 TRHPDEQEGKLSKLKSKIVSETYLTLKAKAIDLGKYLLLSPEEQQSGGASKPSILSDAME 148 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD GI A F+ + ++ + K+ LQE+ ++ P Y Sbjct: 149 ALICAIYLDSGISAATRFIRNHILNNYQETVTREELVNYKSILQEYMQSRNQPPPTYVTV 208 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GP+H F V V G +K+ A Q AA ++ GI Sbjct: 209 AEQGPEHHKTFVVEVRWGNKLLGTGKGNTKKNAHQEAARMACQKLGI 255 >gi|152981163|ref|YP_001353060.1| ribonuclease III [Janthinobacterium sp. Marseille] gi|151281240|gb|ABR89650.1| ribonuclease III [Janthinobacterium sp. Marseille] Length = 322 Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 73/215 (33%), Positives = 111/215 (51%), Gaps = 14/215 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ R+G+ F + LL++ALTH S + E RLEFLGD IL ++++LLF+ + E Sbjct: 6 LQNRLGHTFKDAVLLQQALTHRSHGSVHNE---RLEFLGDSILNCVVASLLFDRYSKIDE 62 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV ++ ++A+ L+L+ F+R+ K SI AD +E+L A++L Sbjct: 63 GDLSRLRANLVKQQSLYEIAQRLELSHFLRLGEGELKSGGFRRPSILADTLEALFGAIFL 122 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G + A + + ++ +DAKT LQE+ K P+Y V G H+ Sbjct: 123 DAGFDTARDVIRALYIPILDSVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATHGAAHN 182 Query: 187 PRFTVVVEISGLAPAQ-----GMDCSKRAAEQVAA 216 F EI L P G S+RA EQ AA Sbjct: 183 QEF----EIECLVPKLDIQVFGTGGSRRAGEQAAA 213 >gi|53804477|ref|YP_113920.1| ribonuclease III [Methylococcus capsulatus str. Bath] gi|81682093|sp|Q608M7|RNC_METCA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|53758238|gb|AAU92529.1| ribonuclease III [Methylococcus capsulatus str. Bath] Length = 230 Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 115/220 (52%), Gaps = 6/220 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + L +++G F + LL ALTH S + ERLEFLGD +LG +++ L+ F S Sbjct: 5 HEHLARKLGIPFRDPGLLRNALTHRSAEGV---NNERLEFLGDSVLGFVVTEYLYQRFPS 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EG LS +LV+ + +++AREL+L ++ + S K SI +D +E+++ A Sbjct: 62 ADEGVLSRLRATLVNETSLARIARELELGEYLILGSGELKSGGYRRDSILSDALEAILGA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D GI+ + +++ AL +++D KT LQE + P Y + +SG Sbjct: 122 VLRDQGIDACRALILTLFERPLSALSLDDWKKDPKTRLQELMQGRGLPLPVYTLIDQSGL 181 Query: 184 DHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKR 222 HD F V E+ + P G S++ AEQ AA +L R Sbjct: 182 PHDQHFRVRCEVPLAVEPCVGEGSSRKKAEQQAAENMLSR 221 >gi|307298654|ref|ZP_07578457.1| ribonuclease III [Thermotogales bacterium mesG1.Ag.4.2] gi|306915819|gb|EFN46203.1| ribonuclease III [Thermotogales bacterium mesG1.Ag.4.2] Length = 241 Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 84/240 (35%), Positives = 130/240 (54%), Gaps = 19/240 (7%) Query: 1 MSALRYSTLEK--RIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRIL 51 +SA +EK RI A+R L+ +AL HSS ++ ES ER+EFLGD +L Sbjct: 2 LSAEEEKLIEKFCRINGIEADRELVFRALCHSSFTNELAQNGERTLESNERMEFLGDAVL 61 Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAE-TCSQVARELDLASFIRVSSDLRKDVCSF 110 L ++ L+N + EGE+S + ++V +E S VA+ + + FI + R+ + Sbjct: 62 ELSLAKTLYNEY-YLTEGEMS-KIRAMVGSEKVLSSVAKTMRIGDFIFLGKGERQTGGAE 119 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHA 167 SI AD E+++AA++L GG+ V+ FV + +RA++ G+ D KT LQE A Sbjct: 120 RDSILADAFEAVLAAIFLTGGLGVSVEFVQSKLSDYIERAVE-GELILDYKTSLQELTQA 178 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKREG 224 +FG P Y+ GP + F V V + G +G +K+AAEQ+AA E+LK+ G Sbjct: 179 RFGSRPLYETLLDEGPPQEKWFKVGVFLDGSLMGEGEGRTKKAAEQLAAKHALEILKKSG 238 >gi|326791395|ref|YP_004309216.1| ribonuclease III [Clostridium lentocellum DSM 5427] gi|326542159|gb|ADZ84018.1| ribonuclease III [Clostridium lentocellum DSM 5427] Length = 240 Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 110/221 (49%), Gaps = 7/221 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 +++++ Y F N +LLE+ALTHSS ++ ++ + ERLEFLGD IL L+IS LF Sbjct: 17 MQRKLSYTFTNSNLLEEALTHSSYANEHRNERVKDNERLEFLGDAILDLIISEYLFKKHP 76 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS S+V + +++AR + L +I + SI AD E+L Sbjct: 77 EMPEGDLSKIRASIVCEASLAKMARFIGLGEYILLGKGEEMTGGRERASILADGFEALTG 136 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRS 181 AL+LDGG A F+ + + D KT LQE Y+V Sbjct: 137 ALFLDGGFNEAKCFLTDTLIAQVEQVASLEDLYTDYKTLLQECIQKVSNAPIHYEVVGEE 196 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDHD F V V ++ +G+ SK+ AEQ AA + L Sbjct: 197 GPDHDKYFYVEVYHDTISLGRGIGKSKKEAEQDAAKKALNN 237 >gi|258544604|ref|ZP_05704838.1| ribonuclease III [Cardiobacterium hominis ATCC 15826] gi|258520146|gb|EEV89005.1| ribonuclease III [Cardiobacterium hominis ATCC 15826] Length = 221 Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 78/215 (36%), Positives = 115/215 (53%), Gaps = 7/215 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ + Y F + +LL +ALTH S HS + + ERLEFLGD +L + S ++ + E Sbjct: 4 LEQALNYRFTDTALLTRALTHRS--HSAKHN-ERLEFLGDALLETISSIWIYQNRRDVPE 60 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ ++VS E + +AR L+L + + S K + SI AD VE+LIAA+YL Sbjct: 61 GDLTRLRATIVSGENLAAIARRLNLGQHLHLGSGELKSGGARRNSILADAVEALIAAVYL 120 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D K AL R +DAKT+LQE+ + P+Y++T SGP+H Sbjct: 121 DSDYPTCEHITLALLKDDLSALPQTATRLKDAKTQLQEYLQGRGLPLPDYQITEESGPEH 180 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F + SG A S++ AEQ AAA++L Sbjct: 181 AREFQIEA-TSGDYRAIAHGSSRKKAEQQAAADLL 214 >gi|228992577|ref|ZP_04152504.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442] gi|228998625|ref|ZP_04158212.1| Ribonuclease 3 [Bacillus mycoides Rock3-17] gi|229006125|ref|ZP_04163813.1| Ribonuclease 3 [Bacillus mycoides Rock1-4] gi|228755201|gb|EEM04558.1| Ribonuclease 3 [Bacillus mycoides Rock1-4] gi|228761093|gb|EEM10052.1| Ribonuclease 3 [Bacillus mycoides Rock3-17] gi|228767211|gb|EEM15847.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442] Length = 245 Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 112/223 (50%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKMFQQKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL + + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAVVCEPSLVRFANELSFGNLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G+E F+ + + + G F D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWEFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++G+A G SK+ AEQ AA+E LK+ Sbjct: 198 EKGPAHNREFVSRVTLNGVALGLGSGKSKKEAEQQAASEALKK 240 >gi|296133569|ref|YP_003640816.1| ribonuclease III [Thermincola sp. JR] gi|296032147|gb|ADG82915.1| ribonuclease III [Thermincola potens JR] Length = 245 Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 108/217 (49%), Gaps = 7/217 (3%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G + + LL ALTHSS +H + E +RLEFLGD +L L+IS L++ F + E Sbjct: 17 MGIDWTSPELLVTALTHSSYAHENKREPIEHNQRLEFLGDAVLELVISEYLYDRFPTYPE 76 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ +V + + VAR ++L +I + + SI AD +E++ A+YL Sbjct: 77 GVLTKMRAGIVCESSLASVARAMNLGQYILMGKGEERSGGRNRPSILADAMEAIFGAVYL 136 Query: 129 DGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D G+E F+ + + + G D KTELQE K T Y + GPDH Sbjct: 137 DQGLETTKLFIINTLSEQISKVVAKGGQTGDYKTELQELVQQKADNTLTYAIIGEEGPDH 196 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + FT V G G +K+ AEQ AA + L++ Sbjct: 197 NKVFTAGVYCHGKIWGVGKGRTKKEAEQAAAHDALEK 233 >gi|322375351|ref|ZP_08049864.1| ribonuclease III [Streptococcus sp. C300] gi|321279614|gb|EFX56654.1| ribonuclease III [Streptococcus sp. C300] Length = 232 Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 112/222 (50%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+KR FA++ LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLKKRFAIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPRKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD + F+ + + +++G F +D KT LQE V Y+VT Sbjct: 126 LGALLLDKDVARVKEFIYQVMIPK-VEAGDFEMIKDYKTHLQELLQVNGDVDIRYQVTSE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226 >gi|223937314|ref|ZP_03629220.1| Ribonuclease III [bacterium Ellin514] gi|223894099|gb|EEF60554.1| Ribonuclease III [bacterium Ellin514] Length = 231 Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 11/211 (5%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 + L+ +GYAF LL+ ALTH S++H + + +RLEFLGD +L L+++ L++ F Sbjct: 5 NNLQTALGYAFRKIELLQLALTHPSVAHEQRTPVQHNQRLEFLGDAVLQLVLTHELYSKF 64 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ LV+ ++ R L+L + + +S S AD E+L+ Sbjct: 65 PDFGEGPLTKARAKLVNRRALAEQGRALNLGAHLILSRGEEAHGGRLRPSALADTFEALL 124 Query: 124 AALYLDGGIEVAGTFV-----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 A++LDGG E F+ D + AL + + K ELQE AK P+Y V Sbjct: 125 GAIFLDGGFEAVEKFLLARFHDMLAEISALPA---LENPKGELQELLQAKSSEAPQYNVV 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SGPDHD F +V+ +G+ A G SK+ Sbjct: 182 STSGPDHDRVFECIVQHNGVELAHGRGKSKK 212 >gi|332970079|gb|EGK09076.1| ribonuclease III [Kingella kingae ATCC 23330] Length = 241 Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 120/220 (54%), Gaps = 10/220 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S+L+ ++GY F + L++ALTH S +HS ++YERLEF+GD IL +I+ +LF F + Sbjct: 11 SSLQTKLGYIFKQPTWLQQALTHRS-AHS--QNYERLEFVGDAILDYVITLMLFEAFPNL 67 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG LSV LV T ++VAREL L + + K SI AD +E++ AA+ Sbjct: 68 PEGRLSVLRTHLVKEATLAEVARELGLGKALILGVGELKSGGYDRASILADALEAIFAAI 127 Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D + A + + + +R ++ + +D KT LQE A TP+Y++ ++G Sbjct: 128 RFDADLPTAERVIRQLFAERVQQIQVQQPDKDHKTRLQEALQAHRLPTPKYRIERQTGEG 187 Query: 185 HDPRFTV---VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 D F V + E+ + A G S+RAAEQ A + L+ Sbjct: 188 SDSHFDVSCDLGELGHITYASG--SSRRAAEQECAKQALQ 225 >gi|187477630|ref|YP_785654.1| ribonuclease III [Bordetella avium 197N] gi|123514189|sp|Q2KWY0|RNC_BORA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|115422216|emb|CAJ48740.1| ribonuclease III [Bordetella avium 197N] Length = 251 Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 74/214 (34%), Positives = 114/214 (53%), Gaps = 8/214 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +TLE R+G+ F +++LLE+ALTH S H + + ERLEFLGD +L +++ +LF + Sbjct: 1 MSLATLETRLGHHFGDQALLEQALTHRS--HGARHN-ERLEFLGDSVLNFVVAAMLFERY 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV + + +A+ L+L+ ++R+ K SI AD VE+L Sbjct: 58 AKLDEGDLSRVRAN-LVKQASLADIAQRLELSPYLRLGEGEMKSGGFRRPSILADAVEAL 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 A++LD G + A +++ + + +DAKT LQE+ + P Y V Sbjct: 117 FGAVFLDAGFDAARKVIEQQYVPVLANVDPETLGKDAKTLLQEFLQGRKLALPLYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213 G H +F V I L S+RAAEQ Sbjct: 177 HGAAHSQQFEVECAIPALEIKVTAAGASRRAAEQ 210 >gi|256544903|ref|ZP_05472274.1| ribonuclease III [Anaerococcus vaginalis ATCC 51170] gi|256399402|gb|EEU13008.1| ribonuclease III [Anaerococcus vaginalis ATCC 51170] Length = 238 Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 119/215 (55%), Gaps = 7/215 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSS-ISHSYQE---SYERLEFLGDRILGLLISTLLFNHFD 64 LE+ IGY F N++L++ ALTHSS I+ S E S ERLEFLGD IL L++S L+ + Sbjct: 14 LEESIGYTFKNKNLIDVALTHSSYINESKDENKSSNERLEFLGDSILDLIVSEELYKNHK 73 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+L+ + +V + S+ + + +L+S++ S++AD E+ A Sbjct: 74 TYPEGKLTKIRSRIVCTSSFSKASEKFNLSSYLLFGKGEESHNGREKKSVKADTFEAFCA 133 Query: 125 ALYLDGGIEVAGTFVDK-YWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G + F+ K Y++ + L++ D KT+LQE+ + + +YK+ Sbjct: 134 AIYLDAGYDFLKDFLMKNYYEIVKELLENDLLFIDYKTKLQEYFNKTNRIILKYKLVKEE 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GP+H+ F + V + G +K+ AEQ+AA Sbjct: 194 GPEHNKTFYMEVSAKNKKLSTGKGKNKKEAEQMAA 228 >gi|134095253|ref|YP_001100328.1| RNase III, ds RNA (partial match) [Herminiimonas arsenicoxydans] gi|133739156|emb|CAL62205.1| Ribonuclease III [Herminiimonas arsenicoxydans] Length = 328 Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 73/215 (33%), Positives = 111/215 (51%), Gaps = 14/215 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ R+G+ F + L+++ALTH S S + E RLEFLGD IL ++++LLF+ + E Sbjct: 6 LQNRLGHTFKDAVLMQQALTHRSHSSVHNE---RLEFLGDSILNCVVASLLFDRYSKIDE 62 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV ++ ++A+ L+L+ F+R+ K SI AD +E+L A++L Sbjct: 63 GDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAIFL 122 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G A + + ++ +DAKT LQE+ K P+Y V G H+ Sbjct: 123 DAGFNAARDVIRALYIPILDSVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATHGAAHN 182 Query: 187 PRFTVVVEISGLAPAQ-----GMDCSKRAAEQVAA 216 F EI L P G S+RA EQ AA Sbjct: 183 QEF----EIECLVPKLDIQVFGTGGSRRAGEQAAA 213 >gi|153954021|ref|YP_001394786.1| ribonuclease III [Clostridium kluyveri DSM 555] gi|219854635|ref|YP_002471757.1| hypothetical protein CKR_1292 [Clostridium kluyveri NBRC 12016] gi|189043304|sp|A5N807|RNC_CLOK5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807246|sp|B9E1G8|RNC_CLOK1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|146346902|gb|EDK33438.1| Hypothetical protein CKL_1396 [Clostridium kluyveri DSM 555] gi|219568359|dbj|BAH06343.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 244 Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 6/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + +EK + +F ++ L++ ALTHSS ++ + + ER+EFLGD +L L IS LF + Sbjct: 7 FEEVEKTLNISFNDKELIDTALTHSSYANGKKGVKFNERMEFLGDSVLQLCISEYLFLIY 66 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S EGEL+ + + +V + +VA++ ++ +I++S TSI A+ VE++I Sbjct: 67 KSKSEGELTKKRSLIVCENSLYEVAKKWNIGKYIKMSKGEEITGGRERTSILANCVEAII 126 Query: 124 AALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 AA+Y+D G + F+ +K ++A+K+ + D KT LQE + EY + Sbjct: 127 AAIYIDSGYKKTKQFIIDNFKDIIEKAIKN-QIVLDYKTNLQEIVQQDGDIHIEYMLIKY 185 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +F V ++ G+ +K+ +EQ AA + LK+ Sbjct: 186 EGPPHRRKFYTKVCVANNVMGSGVGYTKKESEQNAAQDALKK 227 >gi|266623888|ref|ZP_06116823.1| ribonuclease III [Clostridium hathewayi DSM 13479] gi|288864294|gb|EFC96592.1| ribonuclease III [Clostridium hathewayi DSM 13479] Length = 229 Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 70/212 (33%), Positives = 113/212 (53%), Gaps = 5/212 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LE RIGY F +R LL +A+THSS ++ ++ E ERLEFLGD +L ++ S L++ + Sbjct: 8 LEGRIGYRFTDRQLLTQAMTHSSYANEHRLNKLECNERLEFLGDSVLEVVSSDFLYHKYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ S+V T + A ++DL +++ + S+ +D +E+LI Sbjct: 68 ERPEGDLTKIRASIVCEPTLAYCAEDIDLGAYLLLGKGEEATGGRGRASVVSDAMEALIG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG A F+ ++ ++ + D+KT LQE ++ Y++ GPD Sbjct: 128 AIYLDGGFANAKEFILRFI-MNDIEHKQLFFDSKTILQEIVQSQTDQPLAYELLREEGPD 186 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 H+ F I +G +K+AAE VAA Sbjct: 187 HNKLFESRALIGEEEIGRGTGRTKKAAEAVAA 218 >gi|221068688|ref|ZP_03544793.1| Ribonuclease III [Comamonas testosteroni KF-1] gi|264677118|ref|YP_003277024.1| ribonuclease III [Comamonas testosteroni CNB-2] gi|299530659|ref|ZP_07044074.1| ribonuclease III [Comamonas testosteroni S44] gi|220713711|gb|EED69079.1| Ribonuclease III [Comamonas testosteroni KF-1] gi|262207630|gb|ACY31728.1| ribonuclease III [Comamonas testosteroni CNB-2] gi|298721175|gb|EFI62117.1| ribonuclease III [Comamonas testosteroni S44] Length = 227 Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 110/211 (52%), Gaps = 10/211 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L++R+ + FAN +LL++A+TH S S ++ ERLEFLGD +L L IS+LL+ S Sbjct: 7 ALQQRLQHQFANPALLQRAITHRSFS---ADNNERLEFLGDSVLSLAISSLLYAKLASMP 63 Query: 68 EGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS VR N LV T ++A +L L +R+ K SI AD VE+LI A+ Sbjct: 64 EGDLSRVRAN-LVKEGTLHKIALKLQLPDLLRLGEGEAKSGGKQRPSILADAVEALIGAV 122 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD G AG V + + + R +D KT LQE K P+Y V SG Sbjct: 123 YLDAGF-AAGEKVVHHLFEGVDINPHMRAADKDPKTALQELLQGKRMKLPQYHVVEISGA 181 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213 H F V I+ AQG S+R EQ Sbjct: 182 AHKQTFKVECTIAEWNISAQGSGASRRMGEQ 212 >gi|308173556|ref|YP_003920261.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7] gi|307606420|emb|CBI42791.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7] gi|328553511|gb|AEB24003.1| ribonuclease III [Bacillus amyloliquefaciens TA208] gi|328911697|gb|AEB63293.1| ribonuclease III [Bacillus amyloliquefaciens LL3] Length = 249 Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 110/224 (49%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS LF Sbjct: 19 QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLF 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+L+ ++V + +A EL + + ++ ADV E Sbjct: 79 AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 + I ALYLD G+E F+ Y + + G F D K++LQE+ + EYK+ Sbjct: 139 AFIGALYLDQGLEPVQQFLKVYVFPK-INDGAFSHVMDFKSQLQEFVQRDGKGSLEYKIL 197 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F +V + G A G SK+ AEQ AA E L + Sbjct: 198 NEKGPAHNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALAK 241 >gi|284006739|emb|CBA71996.1| ribonuclease III [Arsenophonus nasoniae] Length = 204 Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 6/202 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +++ALTH S S + E RLEFLGD IL +I+ L++ F EG++S +LV Sbjct: 1 MKQALTHRSASSGHNE---RLEFLGDSILSFVIANDLYHRFPKVDEGDMSRMRATLVRGN 57 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 T +++ARE DL +R+ K SI AD +E+LI +++LD I+ V + Sbjct: 58 TLAELAREFDLGECLRLGPGELKSGGFRRESILADTIEALIGSIFLDSDIQTTERIVLAW 117 Query: 143 WKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA- 199 + R ++ G ++D KT LQE+ + P Y V G HD FT+ ++SG+ Sbjct: 118 YDTRLIEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVRVRGEAHDQEFTIHCQVSGIKE 177 Query: 200 PAQGMDCSKRAAEQVAAAEVLK 221 P +G+ S+R AEQ AA + LK Sbjct: 178 PVEGVGSSRRKAEQAAAEQALK 199 >gi|315924201|ref|ZP_07920427.1| ribonuclease III [Pseudoramibacter alactolyticus ATCC 23263] gi|315622603|gb|EFV02558.1| ribonuclease III [Pseudoramibacter alactolyticus ATCC 23263] Length = 229 Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 25/231 (10%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M AL+ L++ IGY F N++ L +ALTHSS +S +++ ERLE+LGD +L L IS LF Sbjct: 1 MEALK---LQQSIGYIFKNQAYLHEALTHSSHGNS-EKNNERLEYLGDAVLELSISDYLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---D 117 HFD EG+++ S+V +E+ SQ AR L L +++ + + +V S S Q+ + Sbjct: 57 KHFD-FDEGKMTKLRASIVCSESLSQAARRLHLGNYLHLG---KGEVISGGRSRQSILEN 112 Query: 118 VVESLIAALYLDG--------GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 E+++ A++LD IE+ ++ +G+ D KT LQE + Sbjct: 113 AFEAMLGAIFLDSDYSTSQKKAIELLSDNIEMAI------AGRLTNDYKTALQELIQKQS 166 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 EY + GP+HD F V + I+G + G +K+ AEQ AA + L Sbjct: 167 DHVIEYVLDKADGPEHDKTFFVTLMINGQMSSNGRGKTKKEAEQQAAKKSL 217 >gi|227510452|ref|ZP_03940501.1| ribonuclease III [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190104|gb|EEI70171.1| ribonuclease III [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 236 Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 109/209 (52%), Gaps = 7/209 (3%) Query: 19 NRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 ++ LL++A T +S + +++ YERLEFLGD +L L++S +F + +G L+ Sbjct: 19 DQDLLDEAFTQASYVNEHRDQHLKFYERLEFLGDAVLQLIVSEYIFKRYPKLPQGRLTRL 78 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 ++V+ ++ S ARE +IR+ K S+ D+ ES + ALYLD G V Sbjct: 79 RAAMVNEQSFSTFARECHFNKYIRLGKGEEKAGARDRDSLLCDIFESFVGALYLDQGKTV 138 Query: 135 AGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 FV + + L G F + D KTELQE A A V +Y++ GPD+D F V Sbjct: 139 VEGFVQQVIFPK-LDEGMFAKFFDHKTELQELAQADGPVDIDYELVDEYGPDNDRLFKVN 197 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V I G+ SK+ AEQ AA E LK Sbjct: 198 VAIDDKLLGVGIGHSKKDAEQRAAQEALK 226 >gi|198283249|ref|YP_002219570.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665431|ref|YP_002425832.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247770|gb|ACH83363.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517644|gb|ACK78230.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270] Length = 226 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/216 (35%), Positives = 110/216 (50%), Gaps = 7/216 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +L++ +GY F +SLL +ALTH S + E RLEFLGD L +++ LF F Sbjct: 6 SLQQSVGYQFREQSLLLQALTHRSAGARHNE---RLEFLGDAALNFVVAAKLFARFPKVS 62 Query: 68 EGELSVRFNSLVSAETCSQVARELDLA-SFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS LV ET +++A ++ LA S I ++R + SI+AD +E++I A Sbjct: 63 EGDLSRMRARLVREETLAEIAGKIALADSLILGPGEIRSG-GARRDSIRADALEAVIGAA 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LDGG A V + + G+ RD KT LQE+ + P Y G Sbjct: 122 FLDGGFGAAERIVAQLVEPLMTDDLGGEELRDPKTRLQEFLQGQGRPVPVYTTVAEKGQA 181 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H+ RF + G + D S+R AEQ AAA +L Sbjct: 182 HERRFVARCSVPGAEATEAEDGSRRKAEQQAAALML 217 >gi|311104757|ref|YP_003977610.1| ribonuclease III [Achromobacter xylosoxidans A8] gi|310759446|gb|ADP14895.1| ribonuclease III [Achromobacter xylosoxidans A8] Length = 253 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/214 (33%), Positives = 115/214 (53%), Gaps = 14/214 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +TLE R+ + F++ +LLE+ALTH S H + + ERLEFLGD +L +++ +LF + Sbjct: 4 ATLENRLDHHFSDPALLEQALTHRS--HGARHN-ERLEFLGDSVLNFVVAAMLFERYSKI 60 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS +LV + + +A+ L+L+ ++R+ K SI AD VE+L A+ Sbjct: 61 DEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALFGAV 120 Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LD G + A + + ++ ++ +DAKT LQE+ + P Y V G Sbjct: 121 FLDAGFDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPLYTVVATHGAA 180 Query: 185 HDPRFTV-----VVEISGLAPAQGMDCSKRAAEQ 213 H +F V +EI +AP S+RAAEQ Sbjct: 181 HSQQFEVECAIPALEIKVMAPG----ASRRAAEQ 210 >gi|269121067|ref|YP_003309244.1| ribonuclease III [Sebaldella termitidis ATCC 33386] gi|268614945|gb|ACZ09313.1| ribonuclease III [Sebaldella termitidis ATCC 33386] Length = 231 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M + L ++IGY F + LL++AL H S ++ + E + ERLEFLGD +L L+ + Sbjct: 1 MDDSKLRELMEKIGYEFDDIKLLKEALIHRSYANEHGEIENINNERLEFLGDAVLDLIST 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ EG+L+ + ++S S V++E+ L ++ +S+ SI Sbjct: 61 EYIYTKEKDDNEGDLAKLKSRIISEPIFSAVSKEIALGEYLFLSNGEEITGGRDRKSILG 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174 D E+LI A+++D G + A KY K + +D KT LQE +KF + P Sbjct: 121 DAFEALIGAIFMDSGFDEAKRIALKYLKDKIDNIDDLEELKDYKTLLQELFQSKFHIIPN 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 Y++ GPDH+ +F + V++ G SK+ AE+ AA E Sbjct: 181 YEILSEKGPDHNKKFEIAVKLKEEIVGIGTGTSKKEAEKNAARE 224 >gi|317401886|gb|EFV82493.1| ribonuclease 3 [Achromobacter xylosoxidans C54] Length = 253 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 115/220 (52%), Gaps = 14/220 (6%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +TLE R+ + F + +LLE+ALTH S H + + ERLEFLGD +L +++ +LF + Sbjct: 1 MSLATLENRLDHHFGDPALLEQALTHRS--HGARHN-ERLEFLGDSVLNFVVAAMLFERY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + + +A+ L+L+ ++R+ K SI AD VE+L Sbjct: 58 SKIDEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G + A + + ++ ++ +DAKT LQE+ + P Y V Sbjct: 118 GAVFLDAGFDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPVYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-----APAQGMDCSKRAAEQVAA 216 G H +F V I L AP S+RAAEQ AA Sbjct: 178 GAAHSQQFEVECAIPALEIKVNAPG----ASRRAAEQSAA 213 >gi|171780118|ref|ZP_02921022.1| hypothetical protein STRINF_01906 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281466|gb|EDT46901.1| hypothetical protein STRINF_01906 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 228 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 8/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M AL + L++ G AF +++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MQALD-TKLQRDFGIAFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+LS + +V E+ + +R FI++ + K +I Sbjct: 60 QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL +D G+E F+++ + K G F R D KT LQE VT + Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEK-GNFERVKDYKTTLQELLQGHSDVTID 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y+V+ SGP H F V V ++ A ++G+ SK+ AEQ AA L Sbjct: 179 YRVSSESGPAHAKVFEVTVYVNDEAKSKGIGKSKKLAEQDAAKNAL 224 >gi|148244713|ref|YP_001219407.1| ribonuclease III [Candidatus Vesicomyosocius okutanii HA] gi|146326540|dbj|BAF61683.1| ribonuclease III [Candidatus Vesicomyosocius okutanii HA] Length = 221 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 114/218 (52%), Gaps = 8/218 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+K+I Y F + SLL+ ALTH S + + ERLEFLGD ILG+ IS L+ F E Sbjct: 4 LQKKINYQFKDLSLLKLALTHRSTGRN---NNERLEFLGDSILGVAISKELYQRFPCVDE 60 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS + L+ +T Q+ L+L++ + + S K SIQAD VE++ A+ L Sbjct: 61 GKLSRLRSHLIRGQTLVQLGTALELSNNLILGSGELKSGGYRRESIQADTVEAIFGAVLL 120 Query: 129 DGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D E + +K ++ +D+KT+LQE+ + + P+YK+ +G DH+ Sbjct: 121 DSNFETTNMVILGLFKVLLNSISPDDSLKDSKTQLQEYLQKRGNILPKYKLIDTTGKDHN 180 Query: 187 PRFTV--VVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F V +E L Q K+ AEQ A +LK+ Sbjct: 181 AIFMVNCFLEDQKLQVKQSAKSIKK-AEQFCAQILLKK 217 >gi|42526537|ref|NP_971635.1| ribonuclease III [Treponema denticola ATCC 35405] gi|81412559|sp|Q73NX5|RNC_TREDE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|41816730|gb|AAS11516.1| ribonuclease III [Treponema denticola ATCC 35405] gi|325473478|gb|EGC76673.1| ribonuclease 3 [Treponema denticola F0402] Length = 246 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 114/215 (53%), Gaps = 9/215 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +K+ G F + LL+ A H S S+ ++ + ERLEFLGD +LGL+ ++ L+ F+ Sbjct: 19 FQKQAGLKFKDLRLLDLAFHHRSFSNEHNNFHANNERLEFLGDSVLGLVAASYLYKSFED 78 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL+ S VS + S+ A +L++++++ + +I AD +E++I A Sbjct: 79 RPEGELAKIKASAVSEDALSKTASKLNISNYLVLGRGEEMSGGREKKAILADALEAVIGA 138 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 Y+D G + A FV + + ++ KF D K+ LQE KF P+Y++ SGP Sbjct: 139 YYIDSGFKAAQKFVLRLLESTIHSVLEKKFISDYKSLLQELVQKKFKTVPKYELKKASGP 198 Query: 184 DHDPRFTVVVEISG--LAPAQGMDCSKRAAEQVAA 216 DHD F V I+G P G +K+ AEQ A Sbjct: 199 DHDRTFWFSVSINGKVYGPLSGK--TKKEAEQSVA 231 >gi|237750847|ref|ZP_04581327.1| ribonuclease III [Helicobacter bilis ATCC 43879] gi|229373292|gb|EEO23683.1| ribonuclease III [Helicobacter bilis ATCC 43879] Length = 228 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 5/199 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++ Y F N+ L +AL H S Y ERLEFLGD +L L++ LF F E Sbjct: 12 LEQKLNYTFKNKKKLAEALAHKSFKKPYNN--ERLEFLGDAVLDLVVGEYLFETFTQKNE 69 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS SLV+ + ++A+ ++L ++ +S+ + SI ++ E+++A +YL Sbjct: 70 GSLSKMRASLVNEASFCKLAQSINLGEYLNLSTSEINNGGRLKASILSNAFEAIMAVIYL 129 Query: 129 DGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 + G++ V F + + D K+ LQE+ +FG P Y++ + GPDH Sbjct: 130 ESGLDSVKRVFYPILHNEFRINEELLTSDYKSSLQEYTQERFGCIPSYEMLSQEGPDHKK 189 Query: 188 RFTVVVEISG--LAPAQGM 204 FT+ V+I A A G+ Sbjct: 190 IFTMQVKIQNKIYASANGV 208 >gi|331701485|ref|YP_004398444.1| ribonuclease 3 [Lactobacillus buchneri NRRL B-30929] gi|329128828|gb|AEB73381.1| Ribonuclease 3 [Lactobacillus buchneri NRRL B-30929] Length = 236 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 112/220 (50%), Gaps = 7/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L++ G ++ LL++A T +S + ++ + YERLEFLGD +L L++S +F + Sbjct: 9 LKQDFGIHIDDQDLLDEAFTQASYVNEHRGEGLKFYERLEFLGDAVLQLIVSDYIFKRYP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G L+ ++V+ ++ S ARE +IR+ K S+ D+ ES + Sbjct: 69 KMPQGRLTRLRAAMVNEQSFSTFARECHFNQYIRLGKGEEKAGARDRDSLLCDIFESFVG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 LYLD G FV K + L G F D KTELQE A A V +Y++ G Sbjct: 129 CLYLDQGQAEVTRFVTKVIFPK-LDEGMFAEFFDHKTELQELAQADGPVAIDYELVDEYG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 PD+D F V V I G G+ SK+ AEQ AA + L++ Sbjct: 188 PDNDRSFKVNVSIDGKLYGVGIGHSKKGAEQKAAQQALEQ 227 >gi|241662605|ref|YP_002980965.1| ribonuclease III [Ralstonia pickettii 12D] gi|309781187|ref|ZP_07675924.1| ribonuclease III [Ralstonia sp. 5_7_47FAA] gi|240864632|gb|ACS62293.1| ribonuclease III [Ralstonia pickettii 12D] gi|308920008|gb|EFP65668.1| ribonuclease III [Ralstonia sp. 5_7_47FAA] Length = 256 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/212 (36%), Positives = 110/212 (51%), Gaps = 8/212 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++R+GY F+ LL++ALTH S HS + ERLEFLGD IL ++ +L+ F E Sbjct: 6 LQQRLGYRFSKPELLQQALTHRS--HSAMHN-ERLEFLGDSILNCAVADMLYGMFGKLDE 62 Query: 69 GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G+LS VR N LV + ++A+ L L +R+ K SI AD +E++ A++ Sbjct: 63 GDLSRVRAN-LVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIFGAVF 121 Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDGG + A T + K + + +DAKT LQE+ P Y V G H Sbjct: 122 LDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPLYTVVATHGAAH 181 Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216 + +F V I L G S+RAAEQ AA Sbjct: 182 NQQFEVECSIPKLEIRVSGSGASRRAAEQSAA 213 >gi|167948160|ref|ZP_02535234.1| ribonuclease III [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 225 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/187 (36%), Positives = 102/187 (54%), Gaps = 5/187 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S+L + +GY F N +LL++ALTH S+ ++ ER EFLGD ILG +I+ LF F+ A Sbjct: 6 SSLCRALGYEFHNPALLQQALTHRSVGG---KNNERFEFLGDAILGFVIADALFEQFERA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS +SLV ET +++AR L L +R+ + SI AD VE+++AA+ Sbjct: 63 SEGQLSRLRSSLVKRETLAKIARGLKLGDHLRLGPGELRSGGQTRDSILADAVEAILAAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD + + ++ L ++D KT LQE A+ P Y+V +G Sbjct: 123 YLDSDYSTTRRVILQIFESLLTGLDLNTQQKDPKTRLQEHLQARKIGLPSYQVIDITGDQ 182 Query: 185 HDPRFTV 191 H FTV Sbjct: 183 HAQTFTV 189 >gi|187928023|ref|YP_001898510.1| ribonuclease III [Ralstonia pickettii 12J] gi|238691793|sp|B2U981|RNC_RALPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|187724913|gb|ACD26078.1| Ribonuclease III [Ralstonia pickettii 12J] Length = 256 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/212 (36%), Positives = 110/212 (51%), Gaps = 8/212 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++R+GY F+ LL++ALTH S HS + ERLEFLGD IL ++ +L+ F E Sbjct: 6 LQQRLGYRFSKPELLQQALTHRS--HSAMHN-ERLEFLGDSILNCAVADMLYGMFGKLDE 62 Query: 69 GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G+LS VR N LV + ++A+ L L +R+ K SI AD +E++ A++ Sbjct: 63 GDLSRVRAN-LVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIFGAVF 121 Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDGG + A T + K + + +DAKT LQE+ P Y V G H Sbjct: 122 LDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPLYTVVATHGAAH 181 Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216 + +F V I L G S+RAAEQ AA Sbjct: 182 NQQFEVECSIPKLEIRVSGSGASRRAAEQSAA 213 >gi|293406009|ref|ZP_06650001.1| rnc [Escherichia coli FVEC1412] gi|306814369|ref|ZP_07448531.1| ribonuclease III [Escherichia coli NC101] gi|291428217|gb|EFF01244.1| rnc [Escherichia coli FVEC1412] gi|305851763|gb|EFM52215.1| ribonuclease III [Escherichia coli NC101] gi|313648245|gb|EFS12689.1| ribonuclease III [Shigella flexneri 2a str. 2457T] gi|320176131|gb|EFW51198.1| Ribonuclease III [Shigella dysenteriae CDC 74-1112] gi|320662723|gb|EFX30062.1| ribonuclease III [Escherichia coli O55:H7 str. USDA 5905] gi|323156225|gb|EFZ42384.1| ribonuclease III [Escherichia coli EPECa14] gi|323173115|gb|EFZ58746.1| ribonuclease III [Escherichia coli LT-68] gi|323177303|gb|EFZ62891.1| ribonuclease III [Escherichia coli 1180] gi|326345056|gb|EGD68800.1| Ribonuclease III [Escherichia coli O157:H7 str. 1044] gi|332092616|gb|EGI97688.1| ribonuclease III [Shigella boydii 3594-74] gi|333000427|gb|EGK20009.1| ribonuclease III [Shigella flexneri VA-6] gi|333000857|gb|EGK20429.1| ribonuclease III [Shigella flexneri K-218] gi|333001660|gb|EGK21227.1| ribonuclease III [Shigella flexneri K-272] gi|333015936|gb|EGK35271.1| ribonuclease III [Shigella flexneri K-227] gi|333016828|gb|EGK36154.1| ribonuclease III [Shigella flexneri K-304] Length = 204 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/203 (35%), Positives = 109/203 (53%), Gaps = 6/203 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +++ALTH S S + E RLEFLGD IL +I+ L++ F EG++S +LV Sbjct: 1 MQQALTHRSASSKHNE---RLEFLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGN 57 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 T +++ARE +L +R+ K SI AD VE+LI ++LD I+ + + Sbjct: 58 TLAELAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNW 117 Query: 143 WKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA- 199 ++ R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL+ Sbjct: 118 YQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSE 177 Query: 200 PAQGMDCSKRAAEQVAAAEVLKR 222 P G S+R AEQ AA + LK+ Sbjct: 178 PVVGTGSSRRKAEQAAAEQALKK 200 >gi|293394829|ref|ZP_06639119.1| ribonuclease III [Serratia odorifera DSM 4582] gi|291422580|gb|EFE95819.1| ribonuclease III [Serratia odorifera DSM 4582] Length = 204 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 107/201 (53%), Gaps = 6/201 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALTH S S + E RLEFLGD IL +I+ L++ F EG++S +LV T Sbjct: 3 QALTHRSASSKHNE---RLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTL 59 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 +++ARE DL +R+ K SI AD VE+LI ++LD I+ + +++ Sbjct: 60 AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVERLILDWYR 119 Query: 145 QR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PA 201 R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL+ P Sbjct: 120 SRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEPV 179 Query: 202 QGMDCSKRAAEQVAAAEVLKR 222 G S+R AEQ AA + LK+ Sbjct: 180 VGTGSSRRKAEQAAAEQALKK 200 >gi|238021755|ref|ZP_04602181.1| hypothetical protein GCWU000324_01658 [Kingella oralis ATCC 51147] gi|237866369|gb|EEP67411.1| hypothetical protein GCWU000324_01658 [Kingella oralis ATCC 51147] Length = 239 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/217 (33%), Positives = 116/217 (53%), Gaps = 10/217 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+K++GY F N +LL++ALTH S + ++ ERLEF+GD IL I+ +L++ F E Sbjct: 14 LQKQLGYTFKNPALLQQALTHRSY---HAQNNERLEFIGDSILDYAIAKMLYHAFPKLPE 70 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS LV T +++AREL + + + + + K + SI AD VE+L+AA+ Sbjct: 71 GRLSPLRAQLVKEATLAEIARELHIGNALYLGTGELKSGGNDRPSILADAVEALLAAISF 130 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D A V + + R L + +D KT+LQE A+ P+Y++ ++G + Sbjct: 131 DADFATAEATVQRLFAPRIQQLNTHTQAKDPKTQLQEMLQAQHLPLPKYRIEKQTGEGNT 190 Query: 187 PRFTVVVEISGLAP---AQGMDCSKRAAEQVAAAEVL 220 F V ++ L AQ S+RAAEQ A + + Sbjct: 191 ALFDVSCDLGQLGKITYAQAH--SRRAAEQDCAQQAI 225 >gi|46908036|ref|YP_014425.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365] gi|47093844|ref|ZP_00231588.1| ribonuclease III [Listeria monocytogenes str. 4b H7858] gi|226224408|ref|YP_002758515.1| ribonuclease III [Listeria monocytogenes Clip81459] gi|254826153|ref|ZP_05231154.1| ribonuclease III [Listeria monocytogenes FSL J1-194] gi|254852713|ref|ZP_05242061.1| ribonuclease III [Listeria monocytogenes FSL R2-503] gi|254933277|ref|ZP_05266636.1| ribonuclease III [Listeria monocytogenes HPB2262] gi|300763882|ref|ZP_07073879.1| ribonuclease III [Listeria monocytogenes FSL N1-017] gi|73917580|sp|Q71YL2|RNC_LISMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|259491903|sp|C1KWA4|RNC_LISMC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|46881306|gb|AAT04602.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365] gi|47017785|gb|EAL08574.1| ribonuclease III [Listeria monocytogenes str. 4b H7858] gi|225876870|emb|CAS05579.1| Putative ribonuclease III [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606034|gb|EEW18642.1| ribonuclease III [Listeria monocytogenes FSL R2-503] gi|293584837|gb|EFF96869.1| ribonuclease III [Listeria monocytogenes HPB2262] gi|293595393|gb|EFG03154.1| ribonuclease III [Listeria monocytogenes FSL J1-194] gi|300515618|gb|EFK42668.1| ribonuclease III [Listeria monocytogenes FSL N1-017] gi|328473534|gb|EGF44371.1| ribonuclease III [Listeria monocytogenes 220] gi|332312246|gb|EGJ25341.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A] Length = 229 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 7/218 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 S I ALYLD GI+ TF+++ + + +G + + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPK-IDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +GP H+ F V ++G +G +K+ AEQ AA Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219 >gi|238896018|ref|YP_002920754.1| ribonuclease III [Klebsiella pneumoniae NTUH-K2044] gi|238548336|dbj|BAH64687.1| ribonuclease III [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 204 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/203 (35%), Positives = 109/203 (53%), Gaps = 6/203 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +++ALTH S S + E RLEFLGD IL +I+ L++ F EG++S +LV Sbjct: 1 MQQALTHRSASSKHNE---RLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGN 57 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 T +++ARE +L +R+ K SI AD VE+LI ++LD I+ + + Sbjct: 58 TLAEIAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQNVERLILSW 117 Query: 143 WKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA- 199 ++ R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL+ Sbjct: 118 YQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSE 177 Query: 200 PAQGMDCSKRAAEQVAAAEVLKR 222 P G S+R AEQ AA + LK+ Sbjct: 178 PVVGTGSSRRKAEQAAAEQALKK 200 >gi|50954668|ref|YP_061956.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07] gi|81391047|sp|Q6AFJ4|RNC_LEIXX RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|50951150|gb|AAT88851.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07] Length = 237 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/199 (37%), Positives = 99/199 (49%), Gaps = 5/199 (2%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LLE ALTH S ++ + ERLEFLGD ILG ++ LF EGEL+ R SLV Sbjct: 23 LLELALTHRSYAYENGGIPNNERLEFLGDSILGQAVTVKLFRENPGLDEGELAKRRASLV 82 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S+ ++VAR + L ++ + + SI AD VE++I A+YLD G + A V Sbjct: 83 SSVALAEVARGIGLGEYLLLGRGENQSGGREKASILADTVEAVIGAVYLDAGGDEATALV 142 Query: 140 DKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + +F D KT LQE A P Y V +GPDH F V++ G Sbjct: 143 LRLIGPLLADPDRFGAAMDPKTSLQEAAAHHGAGQPVYTV-INTGPDHSKTFHATVDVGG 201 Query: 198 LAPAQGMDCSKRAAEQVAA 216 L A G SK+ AE AA Sbjct: 202 LVTASGEGTSKKQAEMAAA 220 >gi|167765553|ref|ZP_02437617.1| hypothetical protein CLOSS21_00047 [Clostridium sp. SS2/1] gi|317498509|ref|ZP_07956803.1| ribonuclease III [Lachnospiraceae bacterium 5_1_63FAA] gi|167712738|gb|EDS23317.1| hypothetical protein CLOSS21_00047 [Clostridium sp. SS2/1] gi|291559019|emb|CBL37819.1| RNAse III [butyrate-producing bacterium SSC/2] gi|316894202|gb|EFV16390.1| ribonuclease III [Lachnospiraceae bacterium 5_1_63FAA] Length = 228 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 111/226 (49%), Gaps = 5/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIS 56 M A +++IG F S L A HSS ++ S ++ ERLEFLGD +L L+ S Sbjct: 1 MDAKSVEEFQEQIGIKFHEPSRLWNAFIHSSYANERRMSKDKNNERLEFLGDAVLELVTS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS SLV T + AR+++L ++ +S SI + Sbjct: 61 NYLYRTYQKESEGKLSKIRASLVCEPTLAGCARDINLGKYVLLSKGEDMTGGRSRDSILS 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D E++I A+YLD GIE A F++ Y + F DAKT LQE + +Y Sbjct: 121 DAFEAVIGAIYLDQGIETATKFIETYLFKDVENKVLF-FDAKTNLQEIVQGEGKGRLKYV 179 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + GPDH FTV + G SK++AEQ AA E +KR Sbjct: 180 LVGEEGPDHAKIFTVEARLGENVIGTGSGHSKKSAEQHAAFEAIKR 225 >gi|30250251|ref|NP_842321.1| rnc; ribonuclease III (RNAse III) protein [Nitrosomonas europaea ATCC 19718] gi|81436192|sp|Q820I0|RNC_NITEU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|30181046|emb|CAD86236.1| rnc; ribonuclease III (RNAse III) protein [Nitrosomonas europaea ATCC 19718] Length = 245 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/214 (33%), Positives = 105/214 (49%), Gaps = 6/214 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+ +++GY F LL +ALTH S+ + ER EFLGD +L +STLLF F S Sbjct: 24 YAVFLQKLGYTFKQPDLLREALTHRSLGFP---NNERFEFLGDSVLNCAVSTLLFKRFPS 80 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ + V+ + ++A L + I + RK SI A+ VE++I A Sbjct: 81 LPEGDLTRLRANFVNQQALHRLASALGIGELILLGEGERKSGGHHRPSILANAVEAIIGA 140 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G V + ++ R L +D+KT LQE+ ++ PEY V G Sbjct: 141 IYLESGFAVVEQVIVALYEPLIRQLDPDTSGKDSKTLLQEYLQSRKIALPEYSVLLAQGD 200 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216 H F V I G +G S+R AEQ AA Sbjct: 201 PHAQVFHVECVIPGFGIRTRGEGTSRRRAEQEAA 234 >gi|16800985|ref|NP_471253.1| ribonuclease III [Listeria innocua Clip11262] gi|22654065|sp|Q92AK3|RNC_LISIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|16414420|emb|CAC97149.1| rncS [Listeria innocua Clip11262] gi|313618316|gb|EFR90363.1| ribonuclease III [Listeria innocua FSL S4-378] Length = 229 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 114/218 (52%), Gaps = 7/218 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F N LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 S I ALYLD GI+ F+++ + + +G + + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIDKVVKFLERVIFPK-IDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +GP H+ F V ++G +G +K+ AEQ AA Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219 >gi|168333987|ref|ZP_02692211.1| Ribonuclease III [Epulopiscium sp. 'N.t. morphotype B'] Length = 239 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 112/219 (51%), Gaps = 6/219 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHF 63 + EK+I Y F LL+ ALTHSS ++ ++E ERLEFLGD IL L++S LF + Sbjct: 13 SFEKKIEYTFKRIELLDLALTHSSYANEHREQGVKDNERLEFLGDAILDLIVSEYLFKKY 72 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 ++EG+LS S+V + ++ + L+L +I + SI AD E++ Sbjct: 73 PESQEGDLSKFRASIVCEASLAKAGKRLELGKYILLGHGEEMGGGRDRESIIADAFEAVT 132 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ +D E T++ K + + + K +D KT LQ + Y+V Sbjct: 133 GAMLIDSSYEDVKTYLAKTLIEFIKHTSATKLYKDYKTILQIESQKNVNTVIAYEVVEEK 192 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDH+ F V ++ +G +G +KR AEQVAA + L Sbjct: 193 GPDHEKEFVVELKQNGKVIGKGSGRTKRDAEQVAAHQAL 231 >gi|292670166|ref|ZP_06603592.1| ribonuclease III [Selenomonas noxia ATCC 43541] gi|292648118|gb|EFF66090.1| ribonuclease III [Selenomonas noxia ATCC 43541] Length = 238 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 110/206 (53%), Gaps = 5/206 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDS 65 L +G +F + +LL++ALTH S ++ +++ ERLEFLGD +L L ST L+ F Sbjct: 16 LSAEMGVSFNDFALLDEALTHPSYTNEAKDTIPHNERLEFLGDAVLELASSTYLYARFPD 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL+ SLV + T +++AR LDL S +R+ + + + + E++I A Sbjct: 76 CSEGELTKMRASLVQSNTLARLARALDLGSCLRLGRGEFHNGGADRQNNLENAFEAVIGA 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD G E A +V + + A +K + D KT LQE + Y++ SGP Sbjct: 136 VYLDAGWETAKEYVARQLSREADHIKKAQVVHDYKTTLQEHIQQRRNKGIVYELIDESGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 DHD RFT+ V + +G SK+ Sbjct: 196 DHDKRFTMRVLVDNQPIGEGAGRSKK 221 >gi|269926036|ref|YP_003322659.1| ribonuclease III [Thermobaculum terrenum ATCC BAA-798] gi|269789696|gb|ACZ41837.1| ribonuclease III [Thermobaculum terrenum ATCC BAA-798] Length = 234 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 115/220 (52%), Gaps = 8/220 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNH 62 + TL++R+GY F N LL+ ALTH S ++ E+ ER EFLGD IL ++ LF Sbjct: 7 FITLQERLGYKFRNIELLKTALTHRSFANESLEKTETNERFEFLGDSILAFVVGEALFRL 66 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A EG L+ LV + + ++R L + FI + R S S+ AD +E+L Sbjct: 67 FPRASEGILTRARAHLVGRKNLADISRTLGIGDFILLGKGARLSGSSQSESVLADALEAL 126 Query: 123 IAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 IAA+YLD +E + V + + + ++ +D KT LQE +H + P Y V Sbjct: 127 IAAVYLDSDLETCRSVVFRLLRLSKEEIEHWLDVKDNKTRLQELSHRLYRTNPIYTVI-- 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P F V V+++ ++ AQG SK AEQ AA + L Sbjct: 185 AAPPVRDNFIVQVKVNDVS-AQGEGRSKSEAEQEAARKAL 223 >gi|205373341|ref|ZP_03226145.1| ribonuclease III [Bacillus coahuilensis m4-4] Length = 249 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 7/222 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG +F+N S+L++A THSS + ++ E ERLEFLGD +L L +S L+N Sbjct: 19 FKDFQEKIGISFSNVSILKQAFTHSSYVNEHRKKPFEDNERLEFLGDAVLELTVSHFLYN 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A ELD S + + ++ ADV E+ Sbjct: 79 KYATMSEGELTKLRAAIVCEPSLVKFANELDFGSVVLLGKGEELTGGRTRPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G++ F+++ + + G F D K++LQE + EY++ Sbjct: 139 FIGALYLDQGLQSVEKFLEQIVFPK-INDGAFSHVMDYKSQLQELIQREGSGQLEYRILL 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H F V ++ + G SK+ AEQ AA + L+ Sbjct: 198 EKGPAHSKEFVSQVLLNSMEIGVGNGRSKKEAEQHAAQKALE 239 >gi|323342032|ref|ZP_08082265.1| ribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464457|gb|EFY09650.1| ribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414] Length = 226 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 108/211 (51%), Gaps = 6/211 (2%) Query: 17 FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 + N+ L+ A HSS + +E ERLEF+GD +L + +S LF H D EG++++ Sbjct: 14 YFNKDLINNAFIHSSYVNEAEELLEDNERLEFMGDAVLQICVSERLFKHQDHFNEGDMTL 73 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 LV + +Q + +L L ++ + K+ SI AD+ ES I ALYLD GI+ Sbjct: 74 YRAKLVCEDALAQYSLKLKLNDYLMLGMGEEKNGGRVRVSIIADLFESFIGALYLDSGID 133 Query: 134 VAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 +D L+S D KT+LQE+ + + Y+V GP + P F V Sbjct: 134 SVNRVLDSVMNDAFNELESLSI-TDYKTKLQEYIQSDSRKSVSYEVINVVGPSNAPEFEV 192 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 VV++ L QG SK+ AEQ+AA + ++ Sbjct: 193 VVKLDELIFGQGKGLSKKKAEQMAAKDAFEK 223 >gi|260890105|ref|ZP_05901368.1| hypothetical protein GCWU000323_01267 [Leptotrichia hofstadii F0254] gi|260860128|gb|EEX74628.1| ribonuclease III [Leptotrichia hofstadii F0254] Length = 243 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 111/218 (50%), Gaps = 6/218 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L ++IGY F N LE+ALTH S S+ ++ + E+LEFLGD +L L+ + ++ ++ Sbjct: 12 LMQKIGYEFKNEEYLEEALTHRSYSNETEKDRRFNNEKLEFLGDAVLNLITTEYIYELYE 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ + ++S S +A +++L ++ +S+ SI D E+LI Sbjct: 72 KKTEGELAKLKSQIISEPVFSTIASDIELGEYLYLSNGEIMSGGRNRRSILGDAFEALIG 131 Query: 125 ALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++ D A K K L+ + D KT LQE+ K+ PEYK+ G Sbjct: 132 AIFKDSDYYTAKNVALKLLLGKINKLEEIEGTGDYKTVLQEFVQGKYRKMPEYKLLNTKG 191 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 PDHD F + V + G+ SK+ AE+ AA E L Sbjct: 192 PDHDKVFEISVSWNDKIYGVGIGKSKKEAEKHAAKEAL 229 >gi|238916990|ref|YP_002930507.1| ribonuclease III [Eubacterium eligens ATCC 27750] gi|238872350|gb|ACR72060.1| ribonuclease III [Eubacterium eligens ATCC 27750] Length = 237 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 113/224 (50%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLIS 56 M S + IGY F + SLLE ALTHSS ++ ++ ER+EFLGD +L L S Sbjct: 1 MHNKNLSVFMQTIGYDFKDISLLEVALTHSSYANEQKKGNCCDNERMEFLGDAVLELSSS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ + EG+++ S+V T + AR + L +FIR+ SI + Sbjct: 61 DYIYKNHAEMAEGKMTRLRASIVCEPTLALCARAIKLDTFIRLGKGEELTGGRSRDSIVS 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D E++I A+YLDGG A FV+K+ L + K D+KT LQE G +Y+ Sbjct: 121 DACEAVIGAIYLDGGFANAKEFVNKFI-LNDLDNKKLFFDSKTILQEVIQG-LGKEVDYE 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP+H+ +F V + GL +G +K++A Q AA L Sbjct: 179 FIGEEGPEHNKQFVVAAVVDGLFNIKGTGHTKKSASQNAAYAAL 222 >gi|88703551|ref|ZP_01101267.1| ribonuclease III [Congregibacter litoralis KT71] gi|88702265|gb|EAQ99368.1| ribonuclease III [Congregibacter litoralis KT71] Length = 224 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/199 (36%), Positives = 104/199 (52%), Gaps = 6/199 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++ G N +LL +AL+H S+ + ERLEFLGD +LG ++S L+ F A E Sbjct: 7 LERQFGCRLNNDALLHQALSHRSVG---SRNNERLEFLGDSVLGYVVSEELYRRFPDADE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS SLV ++VARE+ L +R+ R SI AD E+++ A+ L Sbjct: 64 GQLSRLRVSLVKGSALAEVAREITLGEQLRLGVGERHGGGRRRNSILADSFEAILGAIVL 123 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D GIE + K + R LK + R+D KT LQE PEY + +G DH Sbjct: 124 DLGIEACRAAILKVFHARFEGLKLEQARKDPKTRLQELLQGSGRPLPEYVLRKATGEDHA 183 Query: 187 PRFTVVVEIS-GLAPAQGM 204 FTV E++ G A+G+ Sbjct: 184 RIFTVACELADGREVAEGI 202 >gi|322387562|ref|ZP_08061171.1| ribonuclease III [Streptococcus infantis ATCC 700779] gi|321141429|gb|EFX36925.1| ribonuclease III [Streptococcus infantis ATCC 700779] Length = 232 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/216 (33%), Positives = 108/216 (50%), Gaps = 7/216 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + LE+R G F+++ LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLEQRFGLVFSDKQLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD + F+ + + +++G F +D KT LQE V Y+V Sbjct: 126 LGALLLDKDLLTVKEFIYQVMIPK-VEAGDFEMIKDYKTHLQELLQVNGDVDIRYQVISE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GP HD F V V + G + +G SK+ AEQ AA Sbjct: 185 IGPAHDKMFEVEVLVEGQSLGRGQGRSKKLAEQEAA 220 >gi|229541120|ref|ZP_04430180.1| ribonuclease III [Bacillus coagulans 36D1] gi|229325540|gb|EEN91215.1| ribonuclease III [Bacillus coagulans 36D1] Length = 246 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 111/222 (50%), Gaps = 7/222 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLF 60 ++ L++++G F + +LL++A THSS + + E ERLEFLGD +L L +S LF Sbjct: 15 KFGKLQEQLGIHFQDVNLLKQAFTHSSYVNEHPEKRRHDNERLEFLGDAVLELTVSHYLF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N F S EGE++ S+V + A EL +I + ++ ADV E Sbjct: 75 NRFPSMNEGEMTKLRASVVCEPSLVIFANELHFGEYILLGKGEEMTGGRTRPALLADVFE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 + I ALYLD G++ + ++K + + G F D K++LQE+ + EY + Sbjct: 135 AFIGALYLDKGLKAVVSLLEKVVFPK-IDEGLFSSTADYKSKLQEYVQKRTSGVLEYTIL 193 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP HD F V ++ A G SK+ AEQ AA L Sbjct: 194 DERGPAHDKEFVSSVSLNNKALGTGKGRSKKEAEQQAAQTAL 235 >gi|315282805|ref|ZP_07871128.1| ribonuclease III [Listeria marthii FSL S4-120] gi|313613534|gb|EFR87355.1| ribonuclease III [Listeria marthii FSL S4-120] Length = 229 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 7/218 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPEMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 S I ALYLD GI+ TF+++ + + +G + + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPK-IDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +GP H+ F V ++G +G +K+ AEQ AA Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219 >gi|47097388|ref|ZP_00234939.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854] gi|217964043|ref|YP_002349721.1| ribonuclease III [Listeria monocytogenes HCC23] gi|254829200|ref|ZP_05233887.1| ribonuclease III [Listeria monocytogenes FSL N3-165] gi|254899498|ref|ZP_05259422.1| ribonuclease III [Listeria monocytogenes J0161] gi|254912363|ref|ZP_05262375.1| ribonuclease III [Listeria monocytogenes J2818] gi|254936690|ref|ZP_05268387.1| ribonuclease III [Listeria monocytogenes F6900] gi|290893065|ref|ZP_06556054.1| ribonuclease III [Listeria monocytogenes FSL J2-071] gi|254807893|sp|B8DDU8|RNC_LISMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|47014236|gb|EAL05218.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854] gi|217333313|gb|ACK39107.1| ribonuclease III [Listeria monocytogenes HCC23] gi|258601611|gb|EEW14936.1| ribonuclease III [Listeria monocytogenes FSL N3-165] gi|258609286|gb|EEW21894.1| ribonuclease III [Listeria monocytogenes F6900] gi|290557425|gb|EFD90950.1| ribonuclease III [Listeria monocytogenes FSL J2-071] gi|293590344|gb|EFF98678.1| ribonuclease III [Listeria monocytogenes J2818] gi|307571387|emb|CAR84566.1| ribonuclease III [Listeria monocytogenes L99] gi|313608181|gb|EFR84216.1| ribonuclease III [Listeria monocytogenes FSL F2-208] Length = 229 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 7/218 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 S I ALYLD GI+ TF+++ + + +G + + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPK-IDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +GP H+ F V ++G +G +K+ AEQ AA Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219 >gi|145588593|ref|YP_001155190.1| ribonuclease III [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046999|gb|ABP33626.1| RNAse III [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 263 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 116/219 (52%), Gaps = 8/219 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + + +TL++R+GY F LL +ALTH S HS +++ ERLEFLGD IL +++ LL+ Sbjct: 5 AVIETATLQERLGYVFKKTELLNQALTHRS--HS-KKNNERLEFLGDSILNCVVADLLYE 61 Query: 62 HFDSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG+LS VR N LV + ++A+ L L+ +R+ K SI AD +E Sbjct: 62 RYSDLDEGDLSRVRAN-LVKQQALYEIAQTLLLSDHLRLGEGELKSGGFRRPSILADTLE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ A++LDGG + A + K + + +D KT LQE P Y VT Sbjct: 121 AVTGAIFLDGGFDAAKDCLRKLYSVILAQVDPKTLGKDDKTLLQECLQGYQLPLPTYNVT 180 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAA 216 +G H+ +F V I L +G S+RAAEQ AA Sbjct: 181 GTTGAAHNQQFEVECLIPSLKVSVKGDGASRRAAEQSAA 219 >gi|154686009|ref|YP_001421170.1| ribonuclease III [Bacillus amyloliquefaciens FZB42] gi|189043290|sp|A7Z4L3|RNC_BACA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|154351860|gb|ABS73939.1| Rnc [Bacillus amyloliquefaciens FZB42] Length = 249 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS LF Sbjct: 19 QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLF 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+L+ ++V + +A EL + + ++ ADV E Sbjct: 79 AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 + I ALYLD G++ F+ Y + + G F D K++LQE+ + EYK+ Sbjct: 139 AFIGALYLDQGLDPVQQFLKVYVFPK-INDGAFSHVMDFKSQLQEFVQRDGKGSLEYKIL 197 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F +V + G A G SK+ AEQ AA E L + Sbjct: 198 NEKGPAHNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALAK 241 >gi|188585989|ref|YP_001917534.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF] gi|229564354|sp|B2A2N1|RNC_NATTJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|179350676|gb|ACB84946.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF] Length = 230 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 5/212 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65 L++++G + + LL +A+TH+S +H ++ ERLEFLGD +L L IS L+ + Sbjct: 11 LKEKLG-IYVDDKLLLQAVTHTSYAHEQKDVVDHNERLEFLGDAVLELAISETLYKKYPE 69 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL+ LV + ++A +LDL ++R+ S AD VE+LI A Sbjct: 70 LPEGELTKLRAELVCELSLVKIAEKLDLGKYLRLGKGEDSTGGRDRRSTLADTVEALIGA 129 Query: 126 LYLDGGIEVAGTFV-DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +YL + + D + Q + + D KT +QE ++G P+Y++ SGPD Sbjct: 130 VYLQTNYDQTKQLILDLFKDQLSHIDNQRIGDYKTMIQELVQDRYGDPPKYQIVKESGPD 189 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 HD F V+I+ +G SK+ AEQ AA Sbjct: 190 HDKSFVAEVQINNEVVGRGSGKSKKEAEQNAA 221 >gi|262037510|ref|ZP_06010969.1| ribonuclease III [Leptotrichia goodfellowii F0264] gi|261748440|gb|EEY35820.1| ribonuclease III [Leptotrichia goodfellowii F0264] Length = 238 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 113/218 (51%), Gaps = 6/218 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64 L ++I Y F N S L++ALTH S S+ +++S E+LEFLGD +L L+ + ++N Sbjct: 9 LMEKIDYKFRNESYLKEALTHRSFSNEHEKSKNFDNEKLEFLGDAVLNLITTEYIYNSGK 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ + ++S S +A E+ L ++ +S+ SI D E+LI Sbjct: 69 GKNEGELAKLKSQIISEPVFSAIAAEIGLGDYLYLSNGEESSGGRKRKSILGDAFEALIG 128 Query: 125 ALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++LD A K+ K L+ + D KT LQE +K+ PEY++ G Sbjct: 129 AVFLDSDYYTAKNTALKFLPDKINNLEDIEGIIDYKTVLQEVFQSKYKKMPEYEILDTKG 188 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 PDH+ F + V+++ G SK+ AE+ AA E + Sbjct: 189 PDHNKVFEISVKLNNKIIGIGRGKSKKEAEKRAAKEAI 226 >gi|297559194|ref|YP_003678168.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843642|gb|ADH65662.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 248 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/201 (37%), Positives = 110/201 (54%), Gaps = 9/201 (4%) Query: 22 LLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 +L +ALTH S ++Y++ + ERLEFLGD +LGL+++ LF EG+L+ + Sbjct: 25 ILLRALTHRS--YAYEKGGLPTNERLEFLGDSVLGLVVTDTLFRKHPDLPEGQLAKLRAA 82 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 +V+ + VAR L + ++IR+ +SI AD +E++I A+YLD G++VA Sbjct: 83 VVNMRALADVARGLGVGAYIRLGRGEEGTGGRDKSSILADTLEAVIGAVYLDRGLDVASE 142 Query: 138 FVDKYWKQR-ALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 FV + + A SG D KT LQE A+ PEY V SGPDH F V + Sbjct: 143 FVHRLFDPLIATASGLGAGLDWKTSLQELTAAEMLGVPEYHVD-ESGPDHQKTFRATVRV 201 Query: 196 SGLAPAQGMDCSKRAAEQVAA 216 +G + G SK+ AEQ AA Sbjct: 202 AGESYGLGEGRSKKEAEQQAA 222 >gi|104783263|ref|YP_609761.1| ribonuclease III [Pseudomonas entomophila L48] gi|122402118|sp|Q1I5V8|RNC_PSEE4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|95112250|emb|CAK16977.1| ribonuclease III, ds RNA [Pseudomonas entomophila L48] Length = 229 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 115/223 (51%), Gaps = 12/223 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++GY F N+ + ALTH S + + ERLEFLGD IL ++ LF F A+E Sbjct: 8 LERKLGYTFKNQDQMLLALTHRSYAG---RNNERLEFLGDAILNFVVGEALFERFPQARE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS LV ET +++AR DL ++R+ S K SI AD +E+LI A+Y Sbjct: 65 GQLSRLRARLVKGETLARLARGFDLGDYLRLGSGELKSGGFRRESILADALEALIGAIYQ 124 Query: 129 DGGIEVA-----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 D ++ A D++ + + K D KT LQE+ ++ P Y+V G Sbjct: 125 DADMQTARERILAWLTDEFDGLTLVDTNK---DPKTRLQEFLQSRACELPRYEVVDIQGE 181 Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 H F V E+ L ++G S+R AEQVAAA L G+ Sbjct: 182 PHCRTFFVECEVVLLNKKSRGQGVSRRIAEQVAAAAALIALGV 224 >gi|17545782|ref|NP_519184.1| ribonuclease III [Ralstonia solanacearum GMI1000] gi|22654059|sp|Q8Y0I1|RNC_RALSO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|17428076|emb|CAD14765.1| probable ribonuclease III (rnase III) protein [Ralstonia solanacearum GMI1000] Length = 256 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 73/211 (34%), Positives = 108/211 (51%), Gaps = 6/211 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++R+GY F+ LL++ALTH S + + E RLEFLGD IL ++ +L+ F E Sbjct: 6 LQQRLGYRFSKPELLQQALTHRSHNAMHNE---RLEFLGDSILNCAVADMLYGMFGKLDE 62 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV + ++A+ L L +R+ K SI AD +E++ A++L Sbjct: 63 GDLSRVRANLVKQQALYEIAQMLLLPDELRLGEGELKSGGFRRPSILADALEAIFGAVFL 122 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 DGG + A T + K + + +DAKT LQE+ P+Y V G H+ Sbjct: 123 DGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATHGAAHN 182 Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216 +F V I L G S+RAAEQ AA Sbjct: 183 QQFEVECTIPKLEIRVSGSGASRRAAEQSAA 213 >gi|51245097|ref|YP_064981.1| ribonuclease III [Desulfotalea psychrophila LSv54] gi|81642476|sp|Q6ANV0|RNC_DESPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|50876134|emb|CAG35974.1| related to ribonuclease III [Desulfotalea psychrophila LSv54] Length = 241 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 9/225 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 +++ EK+I Y F + LL+KAL HSS + + + ERLEF+GD +L L++ L+ Sbjct: 15 KHAEFEKKINYKFIDLRLLQKALIHSSYAFEQAQAGKNNERLEFVGDAVLDLVVGNALYR 74 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +EGEL+ +LV+ + +AR+++L F+ + +SI + E+ Sbjct: 75 RFPEMREGELTRLRAALVNEGHLATMARKINLGYFLCLGKGEDNSKGREKSSILSCAYEA 134 Query: 122 LIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +I A++ DGG + V++++ +R K DAK+ LQE K P Y++ Sbjct: 135 VIGAIFQDGGYDAVAALVERFFLPVIDRR--KEDLLLADAKSRLQEILQEKHNEGPSYRL 192 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H RFT+ V G SK+ AEQ AA +K+ Sbjct: 193 DNEEGPSHKKRFTISVLFRDEVLGTGEAGSKKEAEQRGAALAIKK 237 >gi|170720259|ref|YP_001747947.1| ribonuclease III [Pseudomonas putida W619] gi|229564376|sp|B1J4E0|RNC_PSEPW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|169758262|gb|ACA71578.1| Ribonuclease III [Pseudomonas putida W619] Length = 229 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 116/223 (52%), Gaps = 12/223 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++GY F ++ + ALTH S + + ERLEFLGD IL + LF F A+E Sbjct: 8 LERKLGYTFKDQDQMVLALTHRSYAG---RNNERLEFLGDAILNFVAGEALFERFPQARE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS LV ET +++AR DL ++R+ S K SI AD +E+LI A+YL Sbjct: 65 GQLSRLRARLVKGETLARLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAIYL 124 Query: 129 DGGIEVAGTFV-----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 D ++ A V D++ + + K D KT LQE+ ++ P Y+V G Sbjct: 125 DADMQTARERVLAWLTDEFESLTLVDTNK---DPKTRLQEFLQSRSCELPRYEVVDIQGE 181 Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 H F V E+ L ++G S+R AEQVAAA L G+ Sbjct: 182 PHCRTFFVECEVVLLNNKSRGQGVSRRIAEQVAAAAALIALGV 224 >gi|226322326|ref|ZP_03797844.1| hypothetical protein COPCOM_00087 [Coprococcus comes ATCC 27758] gi|225209248|gb|EEG91602.1| hypothetical protein COPCOM_00087 [Coprococcus comes ATCC 27758] Length = 252 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LE++IGY F + LL A+THSS + + ERLEFLGD +L L+ S LF Sbjct: 29 LEEKIGYNFKDSHLLRHAVTHSSYVNEKHMKKADCNERLEFLGDAVLELISSEYLFFENQ 88 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGEL+ S+V + + AR+L+L S++ + F SI +D +E+LI Sbjct: 89 TMPEGELTKLRASMVCEKALAFCARDLELGSYLLLGKGEDATGGRFRESITSDALEALIG 148 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG A F+ KY L+ + D+KT LQE Y++ GPD Sbjct: 149 AIYLDGGFANAKEFILKYI-LNDLEGKRLFYDSKTILQEMVQGGQEKGIVYQLVGEEGPD 207 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209 H+ F V I G A G+ +K+ Sbjct: 208 HNKSFRVEAVIGGEAFGCGIGRTKK 232 >gi|289168052|ref|YP_003446321.1| ribonuclease III [Streptococcus mitis B6] gi|288907619|emb|CBJ22456.1| ribonuclease III [Streptococcus mitis B6] Length = 232 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+ FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD + F+ + + +++G+F D KT LQE VT Y+V Sbjct: 126 LGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVTIRYQVISE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|115377692|ref|ZP_01464885.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1] gi|310821555|ref|YP_003953913.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1] gi|115365298|gb|EAU64340.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1] gi|309394627|gb|ADO72086.1| Ribonuclease III [Stigmatella aurantiaca DW4/3-1] Length = 240 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 6/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLF 60 R TLE R+G F + L ALTH S + ++++ ERLEFLGD ++ L IS L Sbjct: 9 RVQTLETRLGVPFLRKDLGLAALTHKSYFNEHRDAGLQDNERLEFLGDAVVDLAISHRLM 68 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +V+ E +++AR L L + + S+ AD +E Sbjct: 69 ERFPLAAEGELSKLRALIVNEEGLARIARRLSLGELLLLGRGEEMTGGREKNSLLADALE 128 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A++L G+E VD+++ + + G+ D KT+LQE A + V P Y+V Sbjct: 129 AVVGAVFLGAGMEPVMVLVDQHFAEALDGVAQGRSGLDYKTKLQEDAQTRLKVPPRYRVV 188 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +GPDH+ F V V I A+ +K+ AEQ AA L Sbjct: 189 AEAGPDHEKTFEVEVSIGSELYARATGRNKKEAEQAAARATL 230 >gi|259046634|ref|ZP_05737035.1| ribonuclease III [Granulicatella adiacens ATCC 49175] gi|259036799|gb|EEW38054.1| ribonuclease III [Granulicatella adiacens ATCC 49175] Length = 236 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 71/214 (33%), Positives = 113/214 (52%), Gaps = 7/214 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64 L+++ +F N +LL +A+THSS ++ ++E ER+EFLGD +L L IS LF F Sbjct: 11 LKEKFDISFNNEALLMEAMTHSSYANEHKEMKGIYNERIEFLGDAVLELTISDWLFRQFP 70 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG+L+ +V ++ S +A+E L ++ + +I DV E+ I Sbjct: 71 HFQEGQLTKLRAQIVCEDSLSLLAKECSLNEYLLLGKGETLSGGREKPAILCDVFEAFIG 130 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G+ F++ + +K+G++ D KTELQE+ V Y++ G Sbjct: 131 ALYLDKGVNEVQRFLNLVVIPK-IKNGRYELITDFKTELQEYLQQNGPVHIRYELVKEEG 189 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 P HD FTV + + G +K+AAEQ+AA Sbjct: 190 PSHDKTFTVQLIVDGKKYKTASGKTKKAAEQMAA 223 >gi|82702876|ref|YP_412442.1| ribonuclease III [Nitrosospira multiformis ATCC 25196] gi|82410941|gb|ABB75050.1| RNAse III [Nitrosospira multiformis ATCC 25196] Length = 230 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/215 (35%), Positives = 110/215 (51%), Gaps = 10/215 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L +++GY F LL +ALTH S HS + ERLEFLGD +L ++ L+F+HF Sbjct: 11 AALCRKLGYTFRRPELLRQALTHRS--HSIPHN-ERLEFLGDAVLNCAVAGLIFHHFPDL 67 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG LS +LV+ + +++A+ L+L IR K SI AD +E++I A+ Sbjct: 68 SEGSLSRIRANLVNQKMLAELAQTLELGKLIRFGEGELKSGGDKRPSILADALEAVIGAI 127 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G E A V+ + L + +D KT LQE+ ++ P Y V G Sbjct: 128 YLDAGFEQAEKTVENLFIPSLGELNTHALGKDPKTLLQEYLQSRKLALPRYAVVATRGEA 187 Query: 185 HDPRFTVVVEISGLAP---AQGMDCSKRAAEQVAA 216 H +F V IS P G S+R+AEQ AA Sbjct: 188 HQQQFQVECVIS--RPQIRTLGEGTSRRSAEQHAA 220 >gi|293604014|ref|ZP_06686427.1| ribonuclease III [Achromobacter piechaudii ATCC 43553] gi|292817618|gb|EFF76686.1| ribonuclease III [Achromobacter piechaudii ATCC 43553] Length = 253 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 14/217 (6%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +TLE R+ + F + +LLE+ALTH S H + + ERLEFLGD +L +++ +LF + Sbjct: 1 MSLATLENRLDHHFGDPALLEQALTHRS--HGARHN-ERLEFLGDSVLNFVVAAMLFERY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + + +A+ L+L+ ++R+ K SI AD VE+L Sbjct: 58 SKIDEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G + A + + ++ ++ +DAKT LQE+ + P Y V Sbjct: 118 GAVFLDAGFDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPLYTVVATH 177 Query: 182 GPDHDPRFTV-----VVEISGLAPAQGMDCSKRAAEQ 213 G H +F V +EI AP S+RAAEQ Sbjct: 178 GAAHSQQFEVECAIPALEIKVTAPG----ASRRAAEQ 210 >gi|283850854|ref|ZP_06368140.1| ribonuclease III [Desulfovibrio sp. FW1012B] gi|283573777|gb|EFC21751.1| ribonuclease III [Desulfovibrio sp. FW1012B] Length = 239 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 115/226 (50%), Gaps = 9/226 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNH 62 ++ +++ +G+AFA LL ALTHSS ++ ++ ERLEFLGD +L L +S LF Sbjct: 5 FAVVQEALGHAFARPELLTAALTHSSWANERGDALGHNERLEFLGDAVLELCVSEELFVR 64 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A EGEL++ + LV+ + + +AR L L + + ++ +D E++ Sbjct: 65 FPEAPEGELTLLRSQLVNEGSLAAMARRLSLEEHVLLGKGEENQGGRTRPALLSDAFEAV 124 Query: 123 IAALYLDGGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 I A++LDGG A F+ + W R + +D K+ LQE+ P Y + Sbjct: 125 IGAIFLDGGYAAAKGFIIRAFAGSWPMR--PAAPKTKDFKSRLQEYTQKAHKSRPVYSLL 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP+HD RF V + + ++ S + AEQ+AA L+ G Sbjct: 183 GSEGPEHDKRFQVRLTLPDGQVITAVEKSVKKAEQMAALRALEALG 228 >gi|322391777|ref|ZP_08065242.1| ribonuclease III [Streptococcus peroris ATCC 700780] gi|321145257|gb|EFX40653.1| ribonuclease III [Streptococcus peroris ATCC 700780] Length = 232 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 110/222 (49%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+ R FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLKNRFAIEFADQNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPKKPEGDLSKLRAMIVREESLAGFARDCQFDEFIKLGKGEEKSGGRHRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD + F+ + +++G F D KT LQE V Y+VT Sbjct: 126 LGALLLDKDVATVKNFIYTVMIPK-VETGDFEMITDYKTHLQELLQVNGDVDICYQVTSE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 185 TGPAHDKIFEVEVLVEGTSIGKGQGRSKKLAEQEAAKNAVEK 226 >gi|332976630|gb|EGK13471.1| ribonuclease III [Desmospora sp. 8437] Length = 231 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTL 58 + + L + IG + N+ L +A TH+S +H +Q ERLEFLGD +L L +S Sbjct: 1 MNLAELGQTIGLSLQNKELFLQAFTHTSFAHERKGERHQPDNERLEFLGDAVLELTVSEH 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L++ F KEG+L+ +V + + AR+L+ +R+ ++ ADV Sbjct: 61 LYHRFPHLKEGDLTRMRARIVCEPSLASFARDLNFGKHVRLGKGEELTGGRNRPALLADV 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRA----LKSGKFRRDAKTELQEWAHAKFGVTPE 174 E+ I ALYL+ G++ F+++ R L G DAK+ LQE + + Sbjct: 121 FEAFIGALYLEKGLDGVIDFMNRVILPRIDDQWLAQGS---DAKSRLQEAVQQEHLGSLV 177 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y++ GP HD +F V +SG G SK+ AEQ AAAE L+R Sbjct: 178 YQIVDVQGPAHDRQFVAEVWLSGEKLGTGAGRSKKEAEQQAAAEGLQR 225 >gi|291459099|ref|ZP_06598489.1| ribonuclease III [Oribacterium sp. oral taxon 078 str. F0262] gi|291418353|gb|EFE92072.1| ribonuclease III [Oribacterium sp. oral taxon 078 str. F0262] Length = 234 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 116/220 (52%), Gaps = 6/220 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60 R S LE+++ Y+F +R LL ALTH S S+ + S +RLEFLGD +L L S L+ Sbjct: 3 RLSLLEEKLAYSFRDRELLLHALTHPSYSNEQGDPKEASNQRLEFLGDAVLELAASDFLY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + +EG ++ +LV T ++ AR+L L ++ + ++ S+ +D E Sbjct: 63 HRVPVIQEGVMTKLRAALVCEPTLAEAARKLSLGDYLVLGRGEGREGIQLRDSVLSDAFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++I A+YLDGG A F+ K +++ RDAKT LQE+ +K ++ Y + Sbjct: 123 AVIGAIYLDGGFSAAQCFI-KRLVLSDIENKSLYRDAKTMLQEYV-SKQRLSLRYALLEE 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 SGP H+ + V I +G SK+ AEQ AA + L Sbjct: 181 SGPCHERFYRVSALIEEKEYGRGEGSSKKKAEQAAAYQAL 220 >gi|313890255|ref|ZP_07823889.1| ribonuclease III [Streptococcus pseudoporcinus SPIN 20026] gi|313121360|gb|EFR44465.1| ribonuclease III [Streptococcus pseudoporcinus SPIN 20026] Length = 230 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 116/219 (52%), Gaps = 7/219 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L++ F ++ LLE A TH+S ++ ++ ERLEFLGD +L L+IS LF + Sbjct: 8 LKETFNIVFNDQDLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFKKYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S EG+LS + +V E+ + +R ++I++ K +I D+ E+ + Sbjct: 68 SKPEGDLSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDLFEAFLG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL LD GIE F+++ + K G F +D KT LQE AK V +Y+V SG Sbjct: 128 ALLLDKGIEDVRLFLNQVMIPQVEK-GNFEKVKDYKTSLQEVLQAKGDVQIDYQVVKESG 186 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P H +F V + ++ ++G+ SK+ AEQ AA + L+ Sbjct: 187 PAHAKQFEVAILVNQEIISRGIGKSKKIAEQNAAKKALE 225 >gi|312877236|ref|ZP_07737204.1| ribonuclease III [Caldicellulosiruptor lactoaceticus 6A] gi|311795950|gb|EFR12311.1| ribonuclease III [Caldicellulosiruptor lactoaceticus 6A] Length = 222 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 9/220 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ +GY F +++LL ALTH S +HS + YERLEFLGD L L +S LF HF E Sbjct: 4 IERALGYTFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPELSE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GEL+ ++V ++T S+VA +L+L + I + + SI ADV+E++ A+++ Sbjct: 64 GELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAIFI 123 Query: 129 DGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 + G ++ + K Q+A+ +GK D KT+LQE + K+ ++ Sbjct: 124 ESGFDIVEKIIVNLLKPYIQKAV-TGKLFYDYKTKLQEIVQRE----GNKKIVYKDCEII 178 Query: 186 DPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + + F + I G ++G SK+ A+Q AA + L G Sbjct: 179 EKKYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218 >gi|331002416|ref|ZP_08325934.1| ribonuclease III [Lachnospiraceae oral taxon 107 str. F0167] gi|330410232|gb|EGG89666.1| ribonuclease III [Lachnospiraceae oral taxon 107 str. F0167] Length = 232 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 13/224 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L++ +GY + N+ LL++ALTHSS ++ +Q S ERLEFLGD +L L+ S + + Sbjct: 8 LQELLGYEYKNKELLKQALTHSSYANEHQLGKNGSNERLEFLGDAVLELVSSEFFYGVYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ S V A+ + L+ F+++ SI +D E++I Sbjct: 68 EKPEGELTKIRASFVCEPALVDCAKNIKLSEFLKLGKGEEHTGGRMRPSIISDTFEAIIG 127 Query: 125 ALYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++YLDGG EV F+ ++ + F D+KT LQE ++ EY + Sbjct: 128 SIYLDGGFASAKEVILKFILNEYENKV-----FFYDSKTILQEVIQSQDSKPVEYTLLSE 182 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH +F V V I G G SK+AAEQ AA E LK+ G Sbjct: 183 EGPDHLKKFVVAVNIDGKRAGVGEGVSKKAAEQAAAYEALKKLG 226 >gi|303242104|ref|ZP_07328595.1| ribonuclease III [Acetivibrio cellulolyticus CD2] gi|302590398|gb|EFL60155.1| ribonuclease III [Acetivibrio cellulolyticus CD2] Length = 235 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 6/221 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63 + EK I Y F ++ L ALTHSS ++ Y+ S ERLEFLGD +L ++IS ++ ++ Sbjct: 13 SFEKIIKYEFKDKDNLVLALTHSSYANEYKSEKLISNERLEFLGDSVLSVVISENIYKNY 72 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EGE++ ++V + A L + ++ + TSI +D +E+LI Sbjct: 73 SHLSEGEMTKFRANVVCEASLENCANNLSIGQYLLLGKGEEITGGRTRTSILSDAMEALI 132 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLDGG+E A +FV ++ S G+ D KT+LQE Y++ Sbjct: 133 GAIYLDGGLESAKSFVLSQMEKFIDDSIKGEIFMDYKTQLQEIIQKNNDQKVTYEIIDEK 192 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F V++ G +K+ AEQ+AA LK+ Sbjct: 193 GPDHSKIFVSQVKLDDKVIGVGEGRTKKEAEQMAAKTSLKK 233 >gi|163846691|ref|YP_001634735.1| ribonuclease III [Chloroflexus aurantiacus J-10-fl] gi|222524496|ref|YP_002568967.1| Ribonuclease III [Chloroflexus sp. Y-400-fl] gi|254807243|sp|A9WJ69|RNC_CHLAA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807245|sp|B9LB70|RNC_CHLSY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|163667980|gb|ABY34346.1| Ribonuclease III [Chloroflexus aurantiacus J-10-fl] gi|222448375|gb|ACM52641.1| Ribonuclease III [Chloroflexus sp. Y-400-fl] Length = 244 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 100/199 (50%), Gaps = 6/199 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH------SYQESYERLEFLGDRILGLLISTL 58 R + LE+ IG F +R+LL+ A H S+ + ++ ERLEFLGD +L + +T Sbjct: 4 RLAELERAIGITFRDRTLLQTAFMHRSLFNEQPHLLNHLTDNERLEFLGDSVLHFVTTTW 63 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF F E L+ +LVS + ++ A + +L + +S + AD+ Sbjct: 64 LFETFPDQDEATLTNWRAALVSTKGLAECAAQFNLGQYAYLSRGEDNPGGRSRQKLLADL 123 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+L+ A+YLD G+E A F+ +W+ R + D T LQE A+F P+Y + Sbjct: 124 FEALVGAIYLDQGLETARAFIVPFWQARIEQIIHIDLDPTTRLQELMQARFKQLPDYSIE 183 Query: 179 FRSGPDHDPRFTVVVEISG 197 GP+H + + V ++G Sbjct: 184 EERGPEHQREYVMAVTVAG 202 >gi|256830196|ref|YP_003158924.1| ribonuclease III [Desulfomicrobium baculatum DSM 4028] gi|256579372|gb|ACU90508.1| ribonuclease III [Desulfomicrobium baculatum DSM 4028] Length = 242 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 112/215 (52%), Gaps = 3/215 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY-ERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y F LL +ALTHSS ++ + + ERLEFLGD +L L +S LF F + Sbjct: 13 LQNEIHYEFKQVKLLIQALTHSSHANEHGCPHNERLEFLGDAVLELAVSQELFRKFPEVQ 72 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ ++LVS +Q AR + L + + + S+ +D +E+++ A+Y Sbjct: 73 EGHLTKMRSALVSEGALAQAARRIHLGACLLLGRGEDVQGGREKNSVLSDALEAVLGAVY 132 Query: 128 LDGGIEVAGTFVD-KYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDGG+E A T V+ Y Q FR RD K+ LQE + P Y + GP+H Sbjct: 133 LDGGLERAITCVNFLYAGQWPTPPETFRPRDFKSLLQEATQRIWKARPSYALRESHGPEH 192 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 ++TVVV + + + S R AEQ AA + L Sbjct: 193 AKQYTVVVTMPDKTEVECEERSMRKAEQGAAEQAL 227 >gi|270292630|ref|ZP_06198841.1| ribonuclease III [Streptococcus sp. M143] gi|270278609|gb|EFA24455.1| ribonuclease III [Streptococcus sp. M143] Length = 232 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 110/222 (49%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+KR FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD + F+ + + ++ G F D KT LQE V Y+VT Sbjct: 126 LGALLLDKDVARVKEFIYQVMIPK-VEVGDFEMITDYKTHLQELLQVNGDVDIRYQVTSE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 185 MGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226 >gi|308271416|emb|CBX28024.1| Ribonuclease 3 [uncultured Desulfobacterium sp.] Length = 220 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/210 (35%), Positives = 112/210 (53%), Gaps = 19/210 (9%) Query: 21 SLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + L ++L HSS + ++ ERLEFLGD +L L I ++ N F EG+LS + Sbjct: 2 NFLVESLRHSSFVNEQSDTQIRDNERLEFLGDAVLNLAIGHIIINRFPELDEGDLSRVRS 61 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT------SIQADVVESLIAALYLDG 130 +LV+ ++VAR LDL S+I++ F+T SI A+ E+++AA+YLDG Sbjct: 62 NLVNELQVAEVARSLDLGSYIQLGK------GEFLTNGRNKNSILANTFEAVVAAIYLDG 115 Query: 131 GIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G + A ++K + SGK D K+++QE + P Y V SGPDHD Sbjct: 116 GYDNAFRIIEKIYLPILKLSGKSAAAYDFKSKVQELVQTGQEIKPAYNVVEESGPDHDKI 175 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 F V + I+ L G SK+ AEQ AA++ Sbjct: 176 FKVELTINDLQTV-GYGKSKKLAEQDAASK 204 >gi|298571391|gb|ADI87733.1| RNase III [uncultured Nitrospirae bacterium MY3-5B] Length = 263 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 117/235 (49%), Gaps = 17/235 (7%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIS-TLLFN 61 ++LE+ I Y F ++ LL +++TH S H Q ER+EFLGD +LGL IS TL Sbjct: 8 TSLEQSINYYFNDKGLLIESVTHRSYYHECLDKSQPYNERVEFLGDAVLGLAISETLYTE 67 Query: 62 HFDSAK----------EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 H K E E+S + LVS + SQ+A++++L +++++ Sbjct: 68 HVFCRKNDKTIHTIFSESEMSRLKSYLVSKKILSQLAQDINLGNYLKLGKGEEMTGGREK 127 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKF 169 S+ A+ +E++ A++LDGG E A + ++ + S D KTELQE + F Sbjct: 128 LSLLANTLEAIFGAVFLDGGYEAAKAVILGLYQPILTQILSNHTSFDYKTELQEISQKLF 187 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PEYK+ SG DHD F V + G G +K+ A+ AA L+ G Sbjct: 188 SSLPEYKLVLESGNDHDKDFVYEVYLDGKCMGTGSGKNKKTAQSAAACMALETLG 242 >gi|37928957|gb|AAP70337.1| ribonuclease III [Ehrlichia ruminantium] gi|37928988|gb|AAP70339.1| ribonuclease III [Ehrlichia ruminantium] gi|37929002|gb|AAP70341.1| ribonuclease III [Ehrlichia ruminantium] gi|37929010|gb|AAP70343.1| ribonuclease III [Ehrlichia ruminantium] Length = 171 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 91/165 (55%) Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +LFN F EG L+ + +LV ++A+ ++L FI +S R + ++ + Sbjct: 1 MLFNIFPYDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLEN 60 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A+YLDGG++ A F+ +WK A +DAKT LQEWA +K P Y + Sbjct: 61 ALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHI 120 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +SGPDH+P FTV V I+ +K+ AEQ AA+ +L + Sbjct: 121 INKSGPDHNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAK 165 >gi|238750386|ref|ZP_04611887.1| Ribonuclease 3 [Yersinia rohdei ATCC 43380] gi|238711317|gb|EEQ03534.1| Ribonuclease 3 [Yersinia rohdei ATCC 43380] Length = 204 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 105/201 (52%), Gaps = 6/201 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALTH S S + E RLEFLGD IL +I+ L+ F EG++S +LV T Sbjct: 3 QALTHRSASSKHNE---RLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNTL 59 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 +++ARE DL +R+ K SI AD VE+LI ++LD I + +++ Sbjct: 60 AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHTIERLILDWYR 119 Query: 145 QR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PA 201 R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL+ P Sbjct: 120 SRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEPV 179 Query: 202 QGMDCSKRAAEQVAAAEVLKR 222 G S+R AEQ AA + LK+ Sbjct: 180 VGAGSSRRKAEQAAAEQALKQ 200 >gi|297588527|ref|ZP_06947170.1| ribonuclease III [Finegoldia magna ATCC 53516] gi|297573900|gb|EFH92621.1| ribonuclease III [Finegoldia magna ATCC 53516] Length = 238 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 112/219 (51%), Gaps = 7/219 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH---SYQE-SYERLEFLGDRILGLLISTLLFNHFD 64 LE+++ Y F + +LL A HSS + SY++ S ERLEFLGD +L L++S L+N Sbjct: 12 LEEKLDYRFTDINLLNLAFFHSSYGNENKSYKDISNERLEFLGDSVLDLIVSDFLYNSKS 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S KEG ++ + +V ++ S +A+ L+L ++ + S S+ AD E++ Sbjct: 72 SLKEGAMTKIRSQMVCEKSFSNMAKYLELGKYLMMGHGEFISGGSEKPSVLADTFEAVFG 131 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G E A V+ +K + + + D KT LQE +YK+ Sbjct: 132 AIYLDSGYESAFKIVENKFKSLFIAEIETKSSFIDYKTMLQENNQKNSRDKLKYKIVKEE 191 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDHD +F V V L G SK+ AEQ AA L Sbjct: 192 GPDHDKKFYVDVYEGNLVIGSGFGSSKKHAEQDAARNAL 230 >gi|306829619|ref|ZP_07462809.1| ribonuclease III [Streptococcus mitis ATCC 6249] gi|304428705|gb|EFM31795.1| ribonuclease III [Streptococcus mitis ATCC 6249] Length = 232 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+ R FA++ LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLKDRFAIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPRKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD + F+ + + +++G F +D KT LQE V Y+VT Sbjct: 126 LGALLLDKDVVRVKEFIYQVMIPK-VEAGDFEMIKDYKTHLQELLQVNGDVDIRYQVTSE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 185 TGPAHDKIFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226 >gi|251772774|gb|EES53336.1| Ribonuclease III [Leptospirillum ferrodiazotrophum] Length = 366 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 118/250 (47%), Gaps = 46/250 (18%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFNH 62 TL + +G F + +E+ALTH S SH +YERLEFLGDR++GL++S L N Sbjct: 15 TLIRMLGLPFKDSFRIEEALTHRSASHERGRKKPIPNYERLEFLGDRVVGLIVSEYLLNM 74 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + A EGE+ F+++VS +T + +AR +DL S++ + S+ AD E+L Sbjct: 75 WPQATEGEVGQVFSTIVSTQTLASIARRMDLGSYMILGKGSNSSGERENASLLADTFEAL 134 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ------RALKSGKFRR--------------------- 155 AA+Y + G+E + ++ Q RA++S R Sbjct: 135 TAAIYCEYGLETTRQILIPWFAQPLQEILRAIESAPPREPRRATVPEPAPSPVVTVTAPR 194 Query: 156 --------------DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K +Q+WA FG+ PE + SGP H RF + + + G+ Sbjct: 195 SATPSPRERPKHPPNYKLLIQKWAQQNFGLLPEVVLIEESGPSHQKRFVMGLNLGGILLG 254 Query: 202 QGMDCSKRAA 211 +G D +KR A Sbjct: 255 EGSDRTKRGA 264 >gi|146306507|ref|YP_001186972.1| ribonuclease III [Pseudomonas mendocina ymp] gi|189043331|sp|A4XSC4|RNC_PSEMY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|145574708|gb|ABP84240.1| RNAse III [Pseudomonas mendocina ymp] Length = 229 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 119/230 (51%), Gaps = 22/230 (9%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+++G++F ++ L+ ALTH S + + ERLEFLGD IL + LF F A Sbjct: 6 SRLERKLGHSFKDQDLMILALTHRSFAG---RNNERLEFLGDAILNFVAGEALFERFPQA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS LV ET + +AR +L ++R+ S K SI AD +E+LI A+ Sbjct: 63 REGQLSRLRARLVKGETLAVLARGFELGEYLRLGSGELKSGGFRRESILADALEALIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKF--------RRDAKTELQEWAHAKFGVTPEYK 176 YLD G++ A ++R L SG+ +D KT LQE+ ++ P Y+ Sbjct: 123 YLDAGMDAA--------RERVLDWLSGELDGLTLIDTNKDPKTRLQEFLQSRACELPRYE 174 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225 V G H F V +++ L G S+R AEQVAAA L G+ Sbjct: 175 VVDIQGEPHCRTFMVECQVALLNEKTLGQGGSRRIAEQVAAAAALIALGV 224 >gi|37929038|gb|AAP70351.1| ribonuclease III [Ehrlichia ruminantium] gi|37929053|gb|AAP70353.1| ribonuclease III [Ehrlichia ruminantium] gi|37929097|gb|AAP70355.1| ribonuclease III [Ehrlichia ruminantium] gi|37929705|gb|AAP70357.1| ribonuclease III [Ehrlichia ruminantium] gi|37929713|gb|AAP70359.1| ribonuclease III [Ehrlichia ruminantium] Length = 171 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 90/165 (54%) Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +LFN F EG L+ + +LV ++A+ ++L FI +S R + ++ + Sbjct: 1 MLFNIFPYDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLEN 60 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A+YLDGG+ A F+ +WK A +DAKT LQEWA +K P Y + Sbjct: 61 ALEALIGAIYLDGGLNAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHI 120 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +SGPDH+P FTV V I+ +K+ AEQ AA+ +L + Sbjct: 121 INKSGPDHNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAK 165 >gi|238784187|ref|ZP_04628200.1| Ribonuclease 3 [Yersinia bercovieri ATCC 43970] gi|238796735|ref|ZP_04640241.1| Ribonuclease 3 [Yersinia mollaretii ATCC 43969] gi|238714896|gb|EEQ06895.1| Ribonuclease 3 [Yersinia bercovieri ATCC 43970] gi|238719466|gb|EEQ11276.1| Ribonuclease 3 [Yersinia mollaretii ATCC 43969] Length = 204 Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 105/201 (52%), Gaps = 6/201 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALTH S S + E RLEFLGD IL +I+ L+ F EG++S +LV T Sbjct: 3 QALTHRSASSKHNE---RLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNTL 59 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 +++ARE DL +R+ K SI AD VE+LI ++LD I + + +++ Sbjct: 60 AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHMIERLILDWYR 119 Query: 145 QR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201 R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 120 SRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEPV 179 Query: 202 QGMDCSKRAAEQVAAAEVLKR 222 G S+R AEQ AA + LK+ Sbjct: 180 IGTGSSRRKAEQAAAEQALKQ 200 >gi|78356751|ref|YP_388200.1| ribonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|90101625|sp|Q310Z1|RNC_DESDG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|78219156|gb|ABB38505.1| RNAse III [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 229 Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 114/221 (51%), Gaps = 5/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62 + L+ + Y FA+ LLE ALTHSS ++ E ERLE+LGD +L L +S LF Sbjct: 2 FEKLQDVLCYRFADVRLLETALTHSSYANERGTEIEHNERLEYLGDAVLELTVSEQLFTR 61 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+L+ LVS + +++AREL L +++ + +S+ +D E++ Sbjct: 62 FPEAREGQLTRMRARLVSKPSLAELARELKLDTYLLLGKGEESQGGRTRSSVLSDAFEAI 121 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + A++LDGG AG V + R + + R DAK+ LQE F P Y + Sbjct: 122 LGAIFLDGGYAAAGKTVLHVFSSRWPQGAEAARTKDAKSTLQELTQRLFKERPVYTLLGS 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 SGP+H+ F V + + + S + AEQ AA L+ Sbjct: 182 SGPEHEKIFKVRLLLPDGRALETEGQSVKRAEQKAAGLALE 222 >gi|323702685|ref|ZP_08114346.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574] gi|323532348|gb|EGB22226.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574] Length = 204 Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 70/184 (38%), Positives = 93/184 (50%), Gaps = 2/184 (1%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 +RLEFLGD +L LLIS L+ F EGEL+ + V + ++VAR LDL +R+ Sbjct: 5 QRLEFLGDAVLELLISEYLYQRFPDRTEGELTKMRAASVCEPSLAKVARGLDLGRCLRMG 64 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAK 158 + SI AD E+L+ A+YLD G+E A FV + + +G+ RD K Sbjct: 65 RGEERSGGRERPSILADAFEALLGAIYLDHGLEAARKFVLEQLNPIITDVVAGRLDRDYK 124 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 TELQE Y + +GPDHD FT V G QG SK+ AEQ AA + Sbjct: 125 TELQERLQQNSPDPVSYVIMKETGPDHDKVFTAGVIYRGQIIGQGSGHSKKEAEQQAAKD 184 Query: 219 VLKR 222 R Sbjct: 185 AFNR 188 >gi|307823639|ref|ZP_07653868.1| ribonuclease III [Methylobacter tundripaludum SV96] gi|307735624|gb|EFO06472.1| ribonuclease III [Methylobacter tundripaludum SV96] Length = 227 Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 76/216 (35%), Positives = 116/216 (53%), Gaps = 6/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L K++G F N L ALTH S S + + ERLEFLGD ILG +I+ LF F A E Sbjct: 8 LCKKLGLKFNNPQLFTMALTHRSASSN---NNERLEFLGDSILGFVIAQKLFELFPGACE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS SLV+ + +++AR+ L ++ + S K SI +D VE++I ALY Sbjct: 65 GVLSRLRASLVNQGSLAELARKHQLGDYLLLGSGELKSGGFRRDSILSDAVEAIIGALYN 124 Query: 129 DGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G++ + ++ + + K ++L +++D KT+LQE ++ P+Y + SG H+ Sbjct: 125 DQGMDASQQWILQLFAEKLKSLSLDNWQKDPKTQLQELMQSRKMELPDYTLMTMSGLAHE 184 Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 F V A P G S++ AEQ AA +L+ Sbjct: 185 QTFKVKCTTPLTAEPCIGTGNSRKKAEQSAAELMLE 220 >gi|119503988|ref|ZP_01626069.1| ribonuclease III [marine gamma proteobacterium HTCC2080] gi|119459991|gb|EAW41085.1| ribonuclease III [marine gamma proteobacterium HTCC2080] Length = 229 Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 75/215 (34%), Positives = 110/215 (51%), Gaps = 11/215 (5%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +L+ R+GY+F + +L+ ALTH S + + ERLEFLGD + +I+ L+ F A Sbjct: 12 SLQNRLGYSFQDLQILKLALTHRSAGRT---NNERLEFLGDSFVNHVIAQRLYLQFPKAS 68 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+L+ + LV + + + L + + RK SI AD VE++ A+ Sbjct: 69 EGQLTRLRSKLVRGTFLAALGEKYALGECLTLGVGERKSGGRHRASILADTVEAIAGAML 128 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 LD G E A + +W AL G+ + +D+KT LQEW A+ P Y + GP Sbjct: 129 LDAGYENAAPVI-LHWFADAL--GELQVDGDKDSKTLLQEWLQARNLPLPSYDLVSVEGP 185 Query: 184 DHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAA 217 DH F VV I+G A G S+R AEQ AA+ Sbjct: 186 DHAQEFEVVCLINGQKNAFSGRGSSRRNAEQQAAS 220 >gi|15838837|ref|NP_299525.1| ribonuclease III [Xylella fastidiosa 9a5c] gi|9107400|gb|AAF85045.1|AE004037_6 ribonuclease III [Xylella fastidiosa 9a5c] Length = 212 Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 106/209 (50%), Gaps = 6/209 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F + SLL +AL H S + E RLEFLGD ++ LLI+ LF + A EG L+ + Sbjct: 2 FTDPSLLLQALRHCSAGTPHNE---RLEFLGDSVVNLLIAEALFQRWPRADEGALTRARS 58 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 LV + + +AR + L + + K SI AD VE++IAA+YLD + Sbjct: 59 ELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVEAVIAAIYLDADLATCR 118 Query: 137 TFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 T V +++ AL GK +D KT LQEW A+ P Y++ F SG H F V Sbjct: 119 TVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELIFESGDPHTKHFRVSCT 178 Query: 195 ISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 + L +G S+R AEQ AA+ + + Sbjct: 179 LGELKLRTEGEGSSRRLAEQDAASHAIDQ 207 >gi|283798076|ref|ZP_06347229.1| ribonuclease III [Clostridium sp. M62/1] gi|291074218|gb|EFE11582.1| ribonuclease III [Clostridium sp. M62/1] gi|295091753|emb|CBK77860.1| RNAse III [Clostridium cf. saccharolyticum K10] gi|295114861|emb|CBL35708.1| RNAse III [butyrate-producing bacterium SM4/1] Length = 234 Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 117/230 (50%), Gaps = 8/230 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + LE +I Y F ++SL+E A++HSS ++ ERLEFLGD +L ++ S Sbjct: 1 MPREHFRELEDKIHYCFKDKSLIELAMSHSSYANEKHLGKLGCNERLEFLGDAVLEIVSS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF+ F EG+L+ S+V T + A ++ L ++ + S+ + Sbjct: 61 DFLFHRFPDMPEGDLTKTRASMVCEPTLAYCAEQIGLGGYLLLGKGEDATGGRTRNSVVS 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+LI A+YLDGG A F+ Y ++ K D+KT LQE A+ Y+ Sbjct: 121 DAMEALIGAIYLDGGFSCAKEFILNYVLND-MEHKKLFYDSKTILQEMVQARGTELLSYE 179 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 + GPDH+ F V I ++G +K+AAEQ+AA + LKRE Sbjct: 180 LLKEEGPDHNKTFEVAALIGEREVSRGAGRTKKAAEQMAAYQAILKLKRE 229 >gi|270308287|ref|YP_003330345.1| ribonuclease III [Dehalococcoides sp. VS] gi|270154179|gb|ACZ62017.1| ribonuclease III [Dehalococcoides sp. VS] Length = 248 Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 8/226 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLL 59 L + LE+ +G F N SLLE+AL H+S + S ER+EFLGD +LG++ + L Sbjct: 13 LDLTELEESLGVKFENPSLLEQALIHTSWVNENPTHLNGSNERMEFLGDAVLGVIFADRL 72 Query: 60 FNHFDSAKEGELSVRFNSL-VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 ++ F +EG+L+ RF SL V E+ +VA ++L +++ + F + A Sbjct: 73 YHDFPDIQEGDLT-RFRSLLVRRESLVRVALGINLGNYLYLGRGEDVSKGRFKPANLAGA 131 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E+++AA+Y+D GI++ + + ++ +++ D K+ LQE A+ +TP Y+ Sbjct: 132 FEAVLAAIYIDKGIDITREVIFRLFRTEMERVQTLSSNIDYKSRLQELIQAQMQMTPRYR 191 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +T SGP+H+ F V A+G SK+ AE AA L++ Sbjct: 192 ITNFSGPEHNRLFVAEVYTEDKVLAEGSGRSKKEAETSAAKAALQQ 237 >gi|77359683|ref|YP_339258.1| RNase III, ds RNA [Pseudoalteromonas haloplanktis TAC125] gi|76874594|emb|CAI85815.1| RNase III, ds RNA [Pseudoalteromonas haloplanktis TAC125] Length = 200 Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 70/197 (35%), Positives = 104/197 (52%), Gaps = 5/197 (2%) Query: 27 LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86 +TH S H Q + ERLEFLGD IL +I+ L+ F A+EG+LS ++LV +T ++ Sbjct: 1 MTHRS--HKGQHN-ERLEFLGDSILSFVIANALYAKFPKAREGDLSRMRSTLVRGQTLAE 57 Query: 87 VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146 E L ++R+ K S AD VE++I A++LD IE G + ++++R Sbjct: 58 FGLEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIGAVFLDSDIERCGELILSWYEER 117 Query: 147 --ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 A+ G ++D KT LQE A+ P Y V G H+ FTV + G+ + Sbjct: 118 LNAISPGLNQKDPKTLLQEHLQARKLSLPGYTVVDTKGQAHNQTFTVECIVDGMDSIISV 177 Query: 205 DCSKRAAEQVAAAEVLK 221 S+R AEQ AA + LK Sbjct: 178 GSSRRKAEQKAAEKALK 194 >gi|229822809|ref|ZP_04448879.1| hypothetical protein GCWU000282_00098 [Catonella morbi ATCC 51271] gi|229787622|gb|EEP23736.1| hypothetical protein GCWU000282_00098 [Catonella morbi ATCC 51271] Length = 247 Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 113/213 (53%), Gaps = 5/213 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFD 64 +EK++ F L+++A H+S ++ + YERLEFLGD +L LL S L++ + Sbjct: 10 IEKQLNLTFKKPELIQQAFRHTSYANEQARRHLPHYERLEFLGDAVLELLSSEFLYHSYP 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+L+ +V ++ + +AR+L F+++ SI AD E+++ Sbjct: 70 NLPEGKLTRMRAQIVQEKSLAYLARQLKFNQFLQLGKGEELSGGRERDSILADCFEAVLG 129 Query: 125 ALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+Y D G+EVA ++++ + Q L G+ +D KT QE + V +Y++ + GP Sbjct: 130 AIYEDQGLEVAKDYLNRVMFSQHQLLLGRVTQDHKTLFQERVQKQGTVQIDYRLKDKQGP 189 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 HD FTV + ++ A G SK+ AE AA Sbjct: 190 AHDQIFTVELYVNDQHIATGQGSSKKQAEMQAA 222 >gi|15895025|ref|NP_348374.1| ribonuclease III [Clostridium acetobutylicum ATCC 824] gi|22654069|sp|Q97IA4|RNC_CLOAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|15024717|gb|AAK79714.1|AE007684_2 DsRNA-specific ribonuclease III [Clostridium acetobutylicum ATCC 824] Length = 230 Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 110/215 (51%), Gaps = 6/215 (2%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 ++G F N +LL ALTHSS ++ + E ERLEFLGD +L L IS F + + EG Sbjct: 13 KLGIEFQNINLLVTALTHSSYANENKNAEYNERLEFLGDAVLQLSISEYFFKKYPTISEG 72 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 EL+ + +V + + L +IR+S SI AD VE++IAA+YLD Sbjct: 73 ELTKKRALVVCGMSLHSIGERWQLGKYIRMSHGEELTGGRTRVSIIADCVEAVIAAIYLD 132 Query: 130 GGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 G + A F+ + ++ Q A+++ K D KT LQE +K +Y + GP H Sbjct: 133 KGFDTAKNFILREFEGTIQNAVEN-KIILDYKTRLQEILQSKGKTDIKYTLVRHEGPPHR 191 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +F V + + G +K+ AEQ AA + LK Sbjct: 192 RKFFVNLNFDNDVKSTGEGYTKKDAEQDAACKALK 226 >gi|260828679|ref|XP_002609290.1| hypothetical protein BRAFLDRAFT_86799 [Branchiostoma floridae] gi|229294646|gb|EEN65300.1| hypothetical protein BRAFLDRAFT_86799 [Branchiostoma floridae] Length = 1490 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 9/226 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 R + E R G F + LL +A TH ++ + +RLEFLGD ++ ++ S L+ H Sbjct: 1198 RLTEFESRCGMEFKHVRLLARAFTHRTVGFNNLTLGHNQRLEFLGDSVMQMVSSEYLYKH 1257 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V+++L + +I S R+ S AD++E+ Sbjct: 1258 FPDHHEGHLSLLRSSLVNNRTQALVSQDLGMEEYIISSDKARQGKLSLRQKTLADLMEAF 1317 Query: 123 IAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEW-----AHAKFGVTPEY 175 + ALY+D G+E F++ + + R + D K++LQ+ K P Y Sbjct: 1318 MGALYVDQGLEYVCVFMNVCFFPRLREFIMNQEWNDPKSQLQQCCLTLRTEGKEPDIPFY 1377 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K+ ++GP H ++TV V G G+ S + AE AA + LK Sbjct: 1378 KILDKAGPSHARKYTVAVYFKGERIGTGVGSSIQQAEMAAARDALK 1423 Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 9/108 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S+ L+ F +EG L+ ++V + + + Sbjct: 1083 TPSLINHN-----ERLEFLGDAVVEFLTSSHLYFMFPDLEEGGLATYRTAIVQNQHLAVL 1137 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIE 133 A++L L F+ + D+C S + A+ +E+LI A+Y+ G+E Sbjct: 1138 AKKLRLDEFMLYAHG--PDLCRESDLRHAMANCLEALIGAMYMQQGLE 1183 >gi|312864846|ref|ZP_07725077.1| ribonuclease III [Streptococcus downei F0415] gi|311099973|gb|EFQ58186.1| ribonuclease III [Streptococcus downei F0415] Length = 228 Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 73/215 (33%), Positives = 110/215 (51%), Gaps = 8/215 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M AL L+ G F ++SLL+ A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MQALE-EKLKADFGIVFKDKSLLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F EG+LS + +V E+ + +++ +FI++ K +I Sbjct: 60 RYLFEKFPKRPEGDLSKMRSMIVREESLAGFSKDCGFEAFIKLGKGEEKTGGRERETILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD GIEV F+++ + ++ G + +D KT LQE K V Sbjct: 120 DLFEAFLGALDLDQGIEVVEKFLNQVMIPK-VEVGDYEQVKDYKTALQEKLQVKGSVQIN 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 Y+V +GP HD F VVV G + G SK+ Sbjct: 179 YRVISETGPAHDKHFEVVVSADGKDLSGGQGKSKK 213 >gi|169824545|ref|YP_001692156.1| ribonuclease III [Finegoldia magna ATCC 29328] gi|302380368|ref|ZP_07268838.1| ribonuclease III [Finegoldia magna ACS-171-V-Col3] gi|303233642|ref|ZP_07320296.1| ribonuclease III [Finegoldia magna BVS033A4] gi|167831350|dbj|BAG08266.1| ribonuclease III [Finegoldia magna ATCC 29328] gi|302311858|gb|EFK93869.1| ribonuclease III [Finegoldia magna ACS-171-V-Col3] gi|302495076|gb|EFL54828.1| ribonuclease III [Finegoldia magna BVS033A4] Length = 238 Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 112/219 (51%), Gaps = 7/219 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH---SYQE-SYERLEFLGDRILGLLISTLLFNHFD 64 LE+++ Y F + +LL A HSS + +Y+ S ERLEFLGD +L L++S L+N Sbjct: 12 LEEKLDYRFTDINLLNLAFFHSSYGNENKAYKNISNERLEFLGDSVLDLVVSDFLYNSKS 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S KEG ++ + +V ++ S +A+ L+L ++ + S S+ AD E++ Sbjct: 72 SLKEGAMTKIRSQMVCEKSFSNMAKYLELGKYLMMGHGEFISGGSEKPSVLADTFEAVFG 131 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G E A V+ +K + + + D KT LQE K +YK+ Sbjct: 132 AIYLDSGYESAFKIVENKFKSLFIAEIETKSSFIDYKTMLQENNQKKSRDKLKYKIVKEE 191 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDHD +F V V L G SK+ AEQ AA L Sbjct: 192 GPDHDKKFYVDVYEGNLVIGSGFGSSKKHAEQDAARNAL 230 >gi|52785573|ref|YP_091402.1| ribonuclease III [Bacillus licheniformis ATCC 14580] gi|163119429|ref|YP_078987.2| ribonuclease III [Bacillus licheniformis ATCC 14580] gi|319646025|ref|ZP_08000255.1| ribonuclease 3 [Bacillus sp. BT1B_CT2] gi|81385589|sp|Q65JQ5|RNC_BACLD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|52348075|gb|AAU40709.1| Rnc [Bacillus licheniformis ATCC 14580] gi|145902936|gb|AAU23349.2| ribonuclease III [Bacillus licheniformis ATCC 14580] gi|317391775|gb|EFV72572.1| ribonuclease 3 [Bacillus sp. BT1B_CT2] Length = 249 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 109/226 (48%), Gaps = 7/226 (3%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 A ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS Sbjct: 17 AEQFKKFQERISVQFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQF 76 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + + EG+L+ ++V + +A EL + + ++ ADV Sbjct: 77 LYAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGELVLLGKGEEMTGGRKRPALLADV 136 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYK 176 E+ I ALYLD G+E TF+ Y + + G F D K++LQE+ EYK Sbjct: 137 FEAFIGALYLDQGLEAVVTFLKAYVFPK-IDDGAFSHVMDFKSQLQEFVQRDGRGILEYK 195 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + GP H+ F V + G G SK+ AEQ AA E L + Sbjct: 196 ILQEKGPAHNREFEANVSLKGEVLGVGSGRSKKEAEQHAAQEALAK 241 >gi|218780584|ref|YP_002431902.1| ribonuclease III [Desulfatibacillum alkenivorans AK-01] gi|218761968|gb|ACL04434.1| Ribonuclease III [Desulfatibacillum alkenivorans AK-01] Length = 535 Score = 104 bits (260), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 112/220 (50%), Gaps = 10/220 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64 LE+ +GY F LL +A+ HSS + + + ERLEFLGD +L L +S +L + + Sbjct: 309 LEEALGYNFKTPELLLEAMCHSSYVNEHPDCTWTHNERLEFLGDAVLNLAVSDMLMSKYS 368 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG+LS SLV+ +++AR L + + + + SI AD +E++ Sbjct: 369 ENREGDLSRLRASLVNEGQLAEIARSLGIGQHLLLGKGEARGRGWDKNSILADSLEAVFG 428 Query: 125 ALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +Y D G +V + + + +D KT LQE+A +K +TP Y++ Sbjct: 429 GIYSDSGYADAFKVIKNLIAPLIPEEVAVAAA--QDYKTRLQEYAQSKLRITPSYELIRE 486 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDH+ F ++ +QG SK+AAEQ AA EVL Sbjct: 487 FGPDHEKTFVAQATVNKEFTSQGKGRSKKAAEQDAAREVL 526 >gi|37929016|gb|AAP70345.1| ribonuclease III [Ehrlichia ruminantium] gi|37929023|gb|AAP70347.1| ribonuclease III [Ehrlichia ruminantium] gi|37929030|gb|AAP70349.1| ribonuclease III [Ehrlichia ruminantium] gi|41814830|gb|AAS10486.1| ribonuclease III [Ehrlichia ruminantium] Length = 171 Score = 104 bits (260), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 91/165 (55%) Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +LFN F EG L+ + +LV ++A+ ++L FI +S R + ++ + Sbjct: 1 MLFNIFPYDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGAKNSNNLEN 60 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A+YLDGG++ A F+ +WK A +DAKT LQEWA +K P Y + Sbjct: 61 ALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHI 120 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +SGPDH+P FTV V I +K+ AEQ AA+ +L++ Sbjct: 121 INKSGPDHNPCFTVEVRIDSHETLHATGHNKKLAEQKAASLMLEK 165 >gi|227504755|ref|ZP_03934804.1| ribonuclease III [Corynebacterium striatum ATCC 6940] gi|227198605|gb|EEI78653.1| ribonuclease III [Corynebacterium striatum ATCC 6940] Length = 256 Score = 104 bits (260), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 8/225 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLL 59 +A+ ++ L K +G A+ +L ALTH S ++ Y + ERLEFLGD +LGL +++ L Sbjct: 18 AAVDHAPLLKSLGVELADENL-RLALTHRSFANENGYLPNNERLEFLGDAVLGLSVASKL 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S E ++S S+VS S +ARE++L I + + SI AD Sbjct: 77 YEQYPSRPESDISKMRASIVSRYGLSDIAREIELGQHILLGKGEQSTGGRDKDSILADTT 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E++ A+Y G E A + + ++++ A+ SG+ D KT LQE P Y Sbjct: 137 EAIFGAIYRQYGFETARDVILRLFQKKIDNAVVSGR-HMDWKTNLQELCAELKAPMPVYT 195 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GP+HD FT V ++GL G+ +K+ AEQ AA E + Sbjct: 196 AT-STGPEHDQTFTAVATVAGLTVGNGVGHNKKLAEQQAAQEACQ 239 >gi|289435148|ref|YP_003465020.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171392|emb|CBH27936.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313632767|gb|EFR99733.1| ribonuclease III [Listeria seeligeri FSL N1-067] gi|313637349|gb|EFS02832.1| ribonuclease III [Listeria seeligeri FSL S4-171] Length = 230 Score = 104 bits (260), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 7/218 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 KWEELQESVGFDFQDIELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 S I ALYLD G+E F+++ + + +G + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGLEKVVKFLERVIFPK-IDAGAYLETVDYKTQLQEIVQRDRDVLIEYDIL 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +GP H+ F V ++G +G +K+ AEQ AA Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219 >gi|322373156|ref|ZP_08047692.1| ribonuclease III [Streptococcus sp. C150] gi|321278198|gb|EFX55267.1| ribonuclease III [Streptococcus sp. C150] Length = 229 Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 103/205 (50%), Gaps = 7/205 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ G F+ + LLE A TH+S ++ ++ ERLEFLGD L L+IS L+N + Sbjct: 8 LEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGE+S +++V E+ + + FIR+ K +I D+ E+ + Sbjct: 68 NKPEGEMSKMRSTIVREESLAGFTKACGFEQFIRLGKGEEKSGGRERATILGDLWEAFLG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G+ F++K + ++ G F R D KTELQE V Y V SG Sbjct: 128 ALYLDQGLPAVEKFLNKVMIPK-VEEGNFDRVTDYKTELQERLQVNGTVDITYTVIEESG 186 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCS 207 P H FT+ V + G + G+ S Sbjct: 187 PAHAKEFTMQVAVDGKELSTGLGKS 211 >gi|238793773|ref|ZP_04637394.1| Ribonuclease 3 [Yersinia intermedia ATCC 29909] gi|238726837|gb|EEQ18370.1| Ribonuclease 3 [Yersinia intermedia ATCC 29909] Length = 204 Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 106/201 (52%), Gaps = 6/201 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALTH S + + E RLEFLGD IL +I+ L++ F EG++S +LV T Sbjct: 3 QALTHRSANSKHNE---RLEFLGDSILSFVIANELYHRFPRVDEGDMSRMRATLVRGNTL 59 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 +++ARE DL +R+ K SI AD VE+LI ++LD I + + +++ Sbjct: 60 AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHMIERLILDWYR 119 Query: 145 QR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201 R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 120 SRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEPV 179 Query: 202 QGMDCSKRAAEQVAAAEVLKR 222 G S+R AEQ AA + LK+ Sbjct: 180 IGTGSSRRKAEQAAAEQALKQ 200 >gi|325509162|gb|ADZ20798.1| ribonuclease III [Clostridium acetobutylicum EA 2018] Length = 230 Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 110/215 (51%), Gaps = 6/215 (2%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 ++G F N +LL ALTHSS ++ + E ERLEFLGD +L L IS F + + EG Sbjct: 13 KLGIEFQNINLLVTALTHSSYANENKNAEYNERLEFLGDAVLQLSISEYFFKKYPTISEG 72 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 EL+ + +V + + L +IR+S SI AD VE++IAA+YLD Sbjct: 73 ELTKKRALVVCGISLHSIGERWQLGKYIRMSHGEELTGGRTRVSIIADCVEAVIAAIYLD 132 Query: 130 GGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 G + A F+ + ++ Q A+++ K D KT LQE +K +Y + GP H Sbjct: 133 KGFDTAKNFILREFEGTIQNAVEN-KIILDYKTRLQEILQSKGKTDIKYTLVRHEGPPHR 191 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +F V + + G +K+ AEQ AA + LK Sbjct: 192 RKFFVNLNFDNDVKSTGEGYTKKDAEQDAACKALK 226 >gi|157692273|ref|YP_001486735.1| ribonuclease III [Bacillus pumilus SAFR-032] gi|157681031|gb|ABV62175.1| ribonuclease III [Bacillus pumilus SAFR-032] Length = 247 Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 108/224 (48%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS LF Sbjct: 17 QFREFQQRISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+L+ ++V + +A EL + + ++ ADV E Sbjct: 77 AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 + I ALYLD G+E F++ Y + + G F D K++LQE+ EY++ Sbjct: 137 AFIGALYLDQGLEPVERFLEAYVYPK-INDGAFSHVMDFKSQLQEFVQRDGKGVLEYRIL 195 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V + G G SK+ AEQ AA E L + Sbjct: 196 HEKGPAHNREFEANVSLRGEVLGIGNGRSKKEAEQHAAQEALAK 239 >gi|89098685|ref|ZP_01171567.1| Rnc [Bacillus sp. NRRL B-14911] gi|89086647|gb|EAR65766.1| Rnc [Bacillus sp. NRRL B-14911] Length = 259 Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 +++ +K+IG +F N LL++A THSS + ++ E ERLEFLGD +L L +S L Sbjct: 18 MQFREFQKKIGISFENEKLLKQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTVSQFL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EGEL+ ++V + A EL+ + + ++ ADV Sbjct: 78 YKKYPMMSEGELTKLRAAVVCEPSLVTFANELEFGKLVLLGKGEEMTGGRERPALLADVF 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E+ I ALYL+ GI+ F+++ + + SG F D K++LQE EYK+ Sbjct: 138 EAFIGALYLEKGIDTVIGFLEQTVFPK-INSGAFSHVMDFKSQLQELVQRDGAGAIEYKI 196 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLK 221 GP H F V +SG G SK+ AEQ AA E+LK Sbjct: 197 LQEKGPAHSREFVSRVSLSGNELGTGTGRSKKEAEQHAAQMALEILK 243 >gi|285019301|ref|YP_003377012.1| ribonuclease III protein [Xanthomonas albilineans GPE PC73] gi|283474519|emb|CBA17020.1| probable ribonuclease III protein [Xanthomonas albilineans] Length = 227 Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 115/214 (53%), Gaps = 6/214 (2%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 RIG+ F LL +ALTH S + E RLEFLGD I+ LLI+ L+ + A EG L Sbjct: 12 RIGHRFTEPQLLAQALTHRSAGAPHNE---RLEFLGDSIVNLLIAEALYQRWPKADEGAL 68 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + LV + + + R+L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 TRARAELVREASLAAIGRQLELGDRLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDAG 128 Query: 132 IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 E + +++ AL GK +DAKT LQEW A+ P Y++ +G +H RF Sbjct: 129 FETCRATILPWFESGLAALPVGKPEKDAKTRLQEWLQARQRALPAYELISETGDEHAKRF 188 Query: 190 TVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKR 222 V ++ + A+G S+R AEQ AAA V+++ Sbjct: 189 RVRCALTEPVLVAEGEGTSRRLAEQQAAAAVIEQ 222 >gi|332523874|ref|ZP_08400126.1| ribonuclease III [Streptococcus porcinus str. Jelinkova 176] gi|332315138|gb|EGJ28123.1| ribonuclease III [Streptococcus porcinus str. Jelinkova 176] Length = 230 Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 119/227 (52%), Gaps = 8/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L++ F ++ LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MKKLK-ALLKETFNIVFNDQDLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+LS + +V E+ + +R ++I++ K +I Sbjct: 60 EYLFKKYPHKPEGDLSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD GIE F+++ + K G F +D KT LQE AK V + Sbjct: 120 DLFEAFLGALLLDKGIEEVRLFLNQVMISQVEK-GNFEKVKDYKTGLQEVLQAKGDVQID 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y+V SGP H +F V + ++ ++G+ SK+ AEQ AA + L+ Sbjct: 179 YQVVKESGPAHAKQFEVAILVNQEVISRGIGKSKKIAEQNAAKKALE 225 >gi|238788224|ref|ZP_04632019.1| Ribonuclease 3 [Yersinia frederiksenii ATCC 33641] gi|238723811|gb|EEQ15456.1| Ribonuclease 3 [Yersinia frederiksenii ATCC 33641] Length = 204 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 104/201 (51%), Gaps = 6/201 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALTH S S + E RLEFLGD IL +I+ L+ F EG++S +LV T Sbjct: 3 QALTHRSASSKHNE---RLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNTL 59 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 +++ARE DL +R+ K SI AD VE+LI ++LD I + +++ Sbjct: 60 AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIHTIERLILDWYR 119 Query: 145 QR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201 R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 120 SRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEPV 179 Query: 202 QGMDCSKRAAEQVAAAEVLKR 222 G S+R AEQ AA + LK+ Sbjct: 180 IGTGSSRRKAEQAAAEQALKQ 200 >gi|125973448|ref|YP_001037358.1| ribonuclease III [Clostridium thermocellum ATCC 27405] gi|256005344|ref|ZP_05430309.1| ribonuclease III [Clostridium thermocellum DSM 2360] gi|281417648|ref|ZP_06248668.1| ribonuclease III [Clostridium thermocellum JW20] gi|125713673|gb|ABN52165.1| RNAse III [Clostridium thermocellum ATCC 27405] gi|255990663|gb|EEU00780.1| ribonuclease III [Clostridium thermocellum DSM 2360] gi|281409050|gb|EFB39308.1| ribonuclease III [Clostridium thermocellum JW20] gi|316940315|gb|ADU74349.1| ribonuclease III [Clostridium thermocellum DSM 1313] Length = 236 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 6/222 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 + LE+ I Y F ++ L ALTHSS ++ ++ S ERLEFLGD +L +++S ++ + Sbjct: 12 NELERVIDYCFEDKMKLVLALTHSSYANECRDERITSNERLEFLGDTVLNMVVSEYIYKN 71 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EGE++ ++V T ++ A+ L + ++ + SI +D VE+L Sbjct: 72 CSYLAEGEMTKFRANVVCERTLAECAQNLSIGKYLLLGKGEENTGGRTRVSILSDAVEAL 131 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+Y+DGG+E A TF+ ++ KS G D KT+LQE Y++ Sbjct: 132 IGAIYIDGGLESARTFILNQLEKTIEKSIQGTIFMDYKTQLQEIIQKTNEHKIAYEIIEE 191 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F V++ G +K+ AEQ+AA L+ Sbjct: 192 KGPDHSKVFVAQVKVDEKVVGVGEGRTKKEAEQMAAKSSLEN 233 >gi|116620923|ref|YP_823079.1| RNAse III [Candidatus Solibacter usitatus Ellin6076] gi|122255019|sp|Q027L3|RNC_SOLUE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116224085|gb|ABJ82794.1| RNAse III [Candidatus Solibacter usitatus Ellin6076] Length = 271 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 113/231 (48%), Gaps = 17/231 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH---------SYQESYERLEFLGDRILGLLISTLL 59 LE ++ Y F + LL +ALTHSS+++ S E+LEFLGD +LG LI+ L Sbjct: 8 LELKLDYRFNDPELLRRALTHSSLANENRPGAGVGSPLNDNEQLEFLGDSVLGFLIAEAL 67 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F EG+LS LVSA VAR LDL S++ + ++ D + Sbjct: 68 VRRFPEYHEGDLSRLKAHLVSAAHLHGVARRLDLGSYLELGRSEEMSGGRTKKTLLVDGL 127 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL----KSGKFRRDA----KTELQEWAHAKFGV 171 E+++AA+YLDGG++ A FV + ++G + A K+ LQE A + Sbjct: 128 EAIMAAIYLDGGVDAARAFVATHVLDAPFFGDEEAGTDIQPAITNFKSALQELAQTRRLP 187 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P Y V GP+H FTV V + AQ +K+ A Q AA + +R Sbjct: 188 QPRYSVVRERGPEHSKTFTVEVRVGKEWTAQAEGRTKKIAAQRAARGLYER 238 >gi|315303706|ref|ZP_07874220.1| ribonuclease III [Listeria ivanovii FSL F6-596] gi|313627919|gb|EFR96538.1| ribonuclease III [Listeria ivanovii FSL F6-596] Length = 229 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 113/218 (51%), Gaps = 7/218 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFYFEDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 S I ALYLD GI TF+++ + + +G + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIAKVVTFLERIIFPK-IDAGAYLETVDYKTQLQEIVQRDRDVLIEYDIL 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +GP H+ F V ++G +G +K+ AEQ AA Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219 >gi|218248059|ref|YP_002373430.1| Ribonuclease III [Cyanothece sp. PCC 8801] gi|257060612|ref|YP_003138500.1| ribonuclease III [Cyanothece sp. PCC 8802] gi|218168537|gb|ACK67274.1| Ribonuclease III [Cyanothece sp. PCC 8801] gi|256590778|gb|ACV01665.1| ribonuclease III [Cyanothece sp. PCC 8802] Length = 225 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 106/219 (48%), Gaps = 15/219 (6%) Query: 17 FANRSLLEKALTHSS-ISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F N+ LL+ ALTH S I+ ++ E ERLEFLGD IL ++S L+ + E +L+ Sbjct: 7 FKNQELLDCALTHRSYINEHFEVTEHNERLEFLGDAILQFVVSEELYRRYPELTEAQLTR 66 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + LV +Q AR LDL + + KD ++ +D E++I A +LD GIE Sbjct: 67 LRSKLVDEPQLAQFARTLDLGQLMYLGQGAIKDGGRENPALLSDAFEAIIGAYFLDAGIE 126 Query: 134 VAGTFVDKYWKQ----------RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 FV +K+ R + D K LQ+WA ++ PEY + +SGP Sbjct: 127 AVQYFVRSLFKEAIDNLVLPESRTVSPSII--DVKNRLQQWALEQYKQVPEYFLIEQSGP 184 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 DH F V I+G G K+ A + AA + L + Sbjct: 185 DHAKEFVFGVRINGQVLGTGKGRRKQEATKAAAQDALDK 223 >gi|322376803|ref|ZP_08051296.1| ribonuclease III [Streptococcus sp. M334] gi|321282610|gb|EFX59617.1| ribonuclease III [Streptococcus sp. M334] Length = 232 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+ FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD + F+ + + +++G+F D KT LQE V Y+V Sbjct: 126 LGALLLDKDVAKVKKFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|317484890|ref|ZP_07943780.1| ribonuclease III [Bilophila wadsworthia 3_1_6] gi|316923872|gb|EFV45068.1| ribonuclease III [Bilophila wadsworthia 3_1_6] Length = 233 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/216 (35%), Positives = 115/216 (53%), Gaps = 9/216 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSIS--HSYQESY-ERLEFLGDRILGLLISTLLFNHFD 64 L+ RIGY F + SLL A+THSS + HS ++ ERLEFLGD +L + +S LF F Sbjct: 5 VLQDRIGYRFKDESLLVLAVTHSSWANEHSAGNAHNERLEFLGDAVLEIAVSAQLFARFP 64 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A+EGEL+ +SLV+ T + +AR+L L +R++ S+ +D +E++ Sbjct: 65 DAREGELTRLRSSLVNEATLAVIARKLHLDDCLRLARGEENQGGRQRDSLLSDAMEAVFG 124 Query: 125 ALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +++DGGIE A V++ W + A K R+D KT+LQE P Y + Sbjct: 125 GVFVDGGIEKARAVVERLYTDLWPKNATKV--RRKDFKTKLQEATQRISKGLPVYALEDS 182 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GP+H F+V V++ + + AEQ AA Sbjct: 183 YGPEHAKIFSVRVDLPDGRQFRASGPGLKRAEQEAA 218 >gi|212639596|ref|YP_002316116.1| ribonuclease III [Anoxybacillus flavithermus WK1] gi|226735364|sp|B7GGE9|RNC_ANOFW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|212561076|gb|ACJ34131.1| DsRNA-specific ribonuclease [Anoxybacillus flavithermus WK1] Length = 238 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 107/225 (47%), Gaps = 7/225 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 +++ +++ G F N LL +A THSS + ++ E ERLEFLGD +L L +S L Sbjct: 8 VKFKQFQEQTGIFFRNEKLLIQAFTHSSYVNEHRKRLHEDNERLEFLGDAVLELTVSQYL 67 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F EGEL+ ++V + A L + + S+ ADV Sbjct: 68 FEQFPQMSEGELTKMRAAIVCEPSLVTFAHALSFGDLVLLGKGEELTGGRMRPSLLADVF 127 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E+ I ALYLD GIE F+ K + ++ G F D K++LQE+ EYK+ Sbjct: 128 EAFIGALYLDQGIEAVVQFLGKTIFPK-IREGAFSHVMDYKSQLQEFVQRDGSGVLEYKI 186 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++G G+ SK+ AEQ AA L + Sbjct: 187 LQERGPAHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAAQMALAK 231 >gi|307708796|ref|ZP_07645258.1| ribonuclease III [Streptococcus mitis NCTC 12261] gi|307615162|gb|EFN94373.1| ribonuclease III [Streptococcus mitis NCTC 12261] Length = 232 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+ FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD + F+ + + +++G+F D KT LQE V Y+V Sbjct: 126 LGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 185 TGPAHDKVFEVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|258645853|ref|ZP_05733322.1| ribonuclease III [Dialister invisus DSM 15470] gi|260403226|gb|EEW96773.1| ribonuclease III [Dialister invisus DSM 15470] Length = 249 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 6/210 (2%) Query: 19 NRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 N LL ALTH+S ++ ++ ERLEFLGD +L L + LF F EG+L+ Sbjct: 28 NMELLNVALTHTSYANEHRNLKVHDNERLEFLGDAVLDLAVGDYLFRRFPEWPEGDLTRA 87 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 S+V C++ A + ++ + SI + ES+I A+YLD G EV Sbjct: 88 KASVVCKPACAECAANFHVGDYMLLGRGEEMSGGRTRVSILGNAFESVIGAVYLDNGYEV 147 Query: 135 AGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 A F+ + ++ + G + D K++LQE A V Y+V GPDHD + Sbjct: 148 AAKFILGHMQKFLDLVDQGIYDHDYKSDLQEIAQKNGDVDIRYEVVRDEGPDHDKTIWME 207 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + I+G A G+ +K+ A Q AA E ++R Sbjct: 208 LFINGKALGTGIGKNKKEAAQNAAKEAIER 237 >gi|312793340|ref|YP_004026263.1| ribonuclease iii [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180480|gb|ADQ40650.1| ribonuclease III [Caldicellulosiruptor kristjanssonii 177R1B] Length = 222 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/216 (32%), Positives = 117/216 (54%), Gaps = 9/216 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ +GY F +++LL ALTH S +HS + YER EFLGD L L +S LF HF E Sbjct: 4 IERALGYTFKDKNLLRLALTHKSATHSNKNCYERFEFLGDAALELAVSKYLFVHFPELSE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GEL+ ++V ++T S+VA +L+L + I + + SI ADV+E++ A+++ Sbjct: 64 GELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAIFI 123 Query: 129 DGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 + G ++ + K Q+A+ +GK D KT+LQE + K+ ++ Sbjct: 124 ESGFDIVEKIIVNLLKPYIQKAV-AGKLFYDYKTKLQEIVQRE----GNKKIVYKDCEII 178 Query: 186 DPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + F + I G ++G SK+ A+Q AA + L Sbjct: 179 EKKYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFL 214 >gi|254302541|ref|ZP_04969899.1| ribonuclease III [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322733|gb|EDK87983.1| ribonuclease III [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 234 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 123/226 (54%), Gaps = 13/226 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ ++ Sbjct: 7 LEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLYKNYK 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS---FMTSIQADVVES 121 +A EG ++ +VS ++++R++ + F+ +S R +V S SI AD E+ Sbjct: 67 NASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLS---RGEVMSGGRNRESILADSFEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++ A+Y+D +E A F + KQ ++ + D K+ LQE+ +F P Y++ Sbjct: 124 ILGAVYIDSNLEEARVFALSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPTYELVA 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDH F + V I G + + +K+ AEQ++A + + G+ Sbjct: 184 ERGPDHMKEFEIQV-IVGNYKEKAVARNKKKAEQLSAKALCIKLGV 228 >gi|329116187|ref|ZP_08244904.1| ribonuclease III [Streptococcus parauberis NCFD 2020] gi|326906592|gb|EGE53506.1| ribonuclease III [Streptococcus parauberis NCFD 2020] Length = 230 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/212 (33%), Positives = 112/212 (52%), Gaps = 7/212 (3%) Query: 17 FANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 FA+R+LLE A TH+S ++ ++ ERLEFLGD +L L+IS LF + + EG++S Sbjct: 16 FADRNLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFEKYPNKAEGDMS 75 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + + +V E+ + +R ++I++ K +I D+ E+ + AL LD G+ Sbjct: 76 KQRSMIVREESLAGFSRFCTFDNYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGV 135 Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E F+ + + K G F + D KT LQE ++ + +Y+V GP HD F Sbjct: 136 EKVRKFLYQVMIPQVEK-GTFEQVMDYKTNLQELLQSQGDIIIDYQVISEEGPAHDKVFE 194 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V V + +QG SK+ AEQ AA L++ Sbjct: 195 VAVLSNEKTLSQGKGKSKKLAEQAAAKNALEQ 226 >gi|169833544|ref|YP_001694678.1| ribonuclease III [Streptococcus pneumoniae Hungary19A-6] gi|221231942|ref|YP_002511094.1| ribonuclease III [Streptococcus pneumoniae ATCC 700669] gi|307706718|ref|ZP_07643523.1| ribonuclease III [Streptococcus mitis SK321] gi|307709493|ref|ZP_07645950.1| ribonuclease III [Streptococcus mitis SK564] gi|238688328|sp|B1IC43|RNC_STRPI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807902|sp|B8ZJR8|RNC_STRPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|168996046|gb|ACA36658.1| ribonuclease III [Streptococcus pneumoniae Hungary19A-6] gi|220674402|emb|CAR68952.1| ribonuclease III [Streptococcus pneumoniae ATCC 700669] gi|301794330|emb|CBW36755.1| ribonuclease III [Streptococcus pneumoniae INV104] gi|301800168|emb|CBW32773.1| ribonuclease III [Streptococcus pneumoniae OXC141] gi|307617803|gb|EFN96965.1| ribonuclease III [Streptococcus mitis SK321] gi|307619807|gb|EFN98926.1| ribonuclease III [Streptococcus mitis SK564] gi|332203096|gb|EGJ17164.1| ribonuclease III [Streptococcus pneumoniae GA47901] Length = 232 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+ FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD + F+ + + +++G+F D KT LQE V Y+V Sbjct: 126 LGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|294504509|ref|YP_003568571.1| ribonuclease III [Yersinia pestis Z176003] gi|169749969|gb|ACA67487.1| Ribonuclease III [Yersinia pseudotuberculosis YPIII] gi|186699329|gb|ACC89958.1| ribonuclease III [Yersinia pseudotuberculosis PB1/+] gi|262362499|gb|ACY59220.1| ribonuclease III [Yersinia pestis D106004] gi|262366496|gb|ACY63053.1| ribonuclease III [Yersinia pestis D182038] gi|294354968|gb|ADE65309.1| ribonuclease III [Yersinia pestis Z176003] Length = 204 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 104/201 (51%), Gaps = 6/201 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALTH S S + E RLEFLGD IL +I+ L+ F EG++S +LV T Sbjct: 3 QALTHRSASSKHNE---RLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNTL 59 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 +++ARE DL +R+ K SI AD VE+LI ++LD I + +++ Sbjct: 60 AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIHTIERLILEWYH 119 Query: 145 QR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201 R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 120 SRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEPV 179 Query: 202 QGMDCSKRAAEQVAAAEVLKR 222 G S+R AEQ AA + LK+ Sbjct: 180 IGTGSSRRKAEQAAAEQALKQ 200 >gi|302878420|ref|YP_003846984.1| ribonuclease III [Gallionella capsiferriformans ES-2] gi|302581209|gb|ADL55220.1| ribonuclease III [Gallionella capsiferriformans ES-2] Length = 229 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/217 (35%), Positives = 112/217 (51%), Gaps = 12/217 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+ L +++GY F LL++ALTH S + + E RLEFLGD ILG +I+ L++ Sbjct: 7 YTELCRQLGYVFIQPQLLQRALTHRSFAPDHNE---RLEFLGDSILGCVIAKHLYSQHPD 63 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS ++LV T A++L+L + +++ K SI AD VE+L A Sbjct: 64 LTEGDLSRLRSNLVKESTLVLFAQQLNLGAQLKLGEGELKSGGHKRPSILADAVEALFGA 123 Query: 126 LYLDGGI-----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +++DGG V FV Y + +K+ +DAKT LQE+ + + P Y V Sbjct: 124 IFIDGGYVAAEAAVLNLFV-PYLAKVDMKT--LGKDAKTLLQEYLQGRRQLLPVYSVVDT 180 Query: 181 SGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216 G H+ F V I L +G S+R AEQ AA Sbjct: 181 LGVAHEQLFQVECTIPSLKISTRGAGTSRRNAEQQAA 217 >gi|148652186|ref|YP_001279279.1| ribonuclease III [Psychrobacter sp. PRwf-1] gi|148571270|gb|ABQ93329.1| RNAse III [Psychrobacter sp. PRwf-1] Length = 259 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 113/226 (50%), Gaps = 19/226 (8%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +L+K++GY+F + SL + ALTH S +YERLEFLGD +LG++I L+ + Sbjct: 28 SLQKQLGYSFNDTSLAKLALTHRSFDGKI--NYERLEFLGDALLGMIIGEALYYQYPKQD 85 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ +LV E+ VA++L+L+S++ + RK SI AD VESLI A+Y Sbjct: 86 EGRLTRMRATLVRQESLVVVAQKLNLSSYLILGVGERKGGGRERASILADTVESLIGAIY 145 Query: 128 LDGG---------IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 LD ++ +D QR LK DAK+ LQEW P Y + Sbjct: 146 LDSQSVDTVKACVLDWFAELIDNVNDQRVLK------DAKSRLQEWLQGYKFELPNYDLL 199 Query: 179 FRSGPDHDPRFTV--VVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G + F V V++ P S+R AEQ A +++ + Sbjct: 200 ETQGNAPNQVFIVRCEVDVPHTTPIVESGESRRIAEQKTAEKMINQ 245 >gi|281358070|ref|ZP_06244554.1| ribonuclease III [Victivallis vadensis ATCC BAA-548] gi|281315443|gb|EFA99472.1| ribonuclease III [Victivallis vadensis ATCC BAA-548] Length = 232 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 119/220 (54%), Gaps = 11/220 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSA 66 L+KR+G+A + L +A+TH S + Y +RLEFLGD +L ++++ LF+ + A Sbjct: 8 LKKRLGFAGPWSNRLAEAVTHRSYAVENNLGYDNQRLEFLGDAVLEIILTEYLFHLYPDA 67 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGE++ ++LV +++AR +L ++ + S AD+ E+++ A Sbjct: 68 AEGEMTKIRSALVREPALARLARRFELGEYLLTGRGEHDSGGADRDSTLADLFEAVLGAF 127 Query: 127 YLDGGIEVAGTFV-----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 YLD G + FV D+Y R+L + + K +LQE++ +G+TP+Y + S Sbjct: 128 YLDAGFDATRQFVTGLIRDEYPDPRSLLTSI---NPKGQLQEYSQRHWGLTPKYSILHTS 184 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP+H P + V V +S A G +++AAE AA ++ + Sbjct: 185 GPEHLPVYEVEVRLSRYN-AVGRAANRKAAEGDAARQLYR 223 >gi|328948083|ref|YP_004365420.1| ribonuclease 3 [Treponema succinifaciens DSM 2489] gi|328448407|gb|AEB14123.1| Ribonuclease 3 [Treponema succinifaciens DSM 2489] Length = 248 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/218 (35%), Positives = 115/218 (52%), Gaps = 11/218 (5%) Query: 17 FANRSLLEKALTHSSISH---SYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N SLL+ A H S S+ SY+ + ERLEFLGD +LGL + L+N KEG+L+ Sbjct: 32 FKNYSLLDLAFHHRSYSNENTSYKRYNNERLEFLGDSVLGLATAAFLYNDMSQNKEGDLA 91 Query: 73 VRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 ++VS ++ + +A E + + ++ + +I AD VE++I ALY+D G Sbjct: 92 KIKANVVSEQSLAPIAVEKMHIDKYLVLGKGEELSGGRTKKAILADAVEAVIGALYIDSG 151 Query: 132 IEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 E A V + + R ++S +D KT LQE+ K P Y + +GPDHD F Sbjct: 152 YESAERLVLELIIPEIRKVQSDHGSKDYKTLLQEFYQKKTNACPSYSLVRTTGPDHDRIF 211 Query: 190 TVVVEISGL--APAQGMDCSKRAAEQVAAAEVLKREGI 225 V V++ + PA G + K++AEQ AA K GI Sbjct: 212 YVSVKLGDVVYGPASGKN--KKSAEQAAAGVACKALGI 247 >gi|149002616|ref|ZP_01827548.1| ribonuclease III [Streptococcus pneumoniae SP14-BS69] gi|168485011|ref|ZP_02709949.1| ribonuclease III [Streptococcus pneumoniae CDC1873-00] gi|168491168|ref|ZP_02715311.1| ribonuclease III [Streptococcus pneumoniae CDC0288-04] gi|225856914|ref|YP_002738425.1| ribonuclease III [Streptococcus pneumoniae P1031] gi|237649948|ref|ZP_04524200.1| ribonuclease III [Streptococcus pneumoniae CCRI 1974] gi|237822503|ref|ZP_04598348.1| ribonuclease III [Streptococcus pneumoniae CCRI 1974M2] gi|254807905|sp|C1CKY7|RNC_STRZP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|147759227|gb|EDK66220.1| ribonuclease III [Streptococcus pneumoniae SP14-BS69] gi|172041872|gb|EDT49918.1| ribonuclease III [Streptococcus pneumoniae CDC1873-00] gi|183574495|gb|EDT95023.1| ribonuclease III [Streptococcus pneumoniae CDC0288-04] gi|225724496|gb|ACO20348.1| ribonuclease III [Streptococcus pneumoniae P1031] gi|332200695|gb|EGJ14767.1| ribonuclease III [Streptococcus pneumoniae GA41317] gi|332201711|gb|EGJ15781.1| ribonuclease III [Streptococcus pneumoniae GA47368] Length = 232 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+ FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPKKPEGDLSKLRAMIVREESLAGFARDCQFNQFIKLGKGEEKSGGRNRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD + F+ + + +++G+F D KT LQE V Y+V Sbjct: 126 LGALLLDKDVAKVKEFIYQVIIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|93005197|ref|YP_579634.1| ribonuclease III [Psychrobacter cryohalolentis K5] gi|92392875|gb|ABE74150.1| RNAse III [Psychrobacter cryohalolentis K5] Length = 265 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 115/223 (51%), Gaps = 19/223 (8%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 R + L +++GY F + SL + ALTH S +++YERLEFLGD +LG+++ L++ + Sbjct: 33 RLAVLTRKLGYVFNDLSLPKLALTHRSFDS--KKNYERLEFLGDALLGMIVGEALYHRYP 90 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG L+ +LV E+ +A+ L+L++ + + RK SI AD VESLI Sbjct: 91 TQNEGRLTRMRATLVRQESLVIIAQNLELSNQLILGVGERKGGGRNRASILADAVESLIG 150 Query: 125 ALYLDGG---------IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 A+YLD + G +D Q+ALK DAK+ LQEW +K P Y Sbjct: 151 AIYLDSQDMNITRECVLSWYGDLIDNVNDQKALK------DAKSRLQEWLQSKQFDLPHY 204 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDC--SKRAAEQVAA 216 ++ G F V +++ L + S+R AEQ AA Sbjct: 205 ELMETRGNAPHQIFVVRCQVNILNCPDITESGESRRIAEQKAA 247 >gi|294054381|ref|YP_003548039.1| ribonuclease III [Coraliomargarita akajimensis DSM 45221] gi|293613714|gb|ADE53869.1| ribonuclease III [Coraliomargarita akajimensis DSM 45221] Length = 228 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/193 (35%), Positives = 101/193 (52%), Gaps = 5/193 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +TL +I ++F + SLLE AL H S+ +++ +RLEFLGD +L L+I+ L+ HF S Sbjct: 6 TTLADKIDHSFTDHSLLEMALKHPSLDIGVEDN-QRLEFLGDAVLDLVIAEYLYQHFPSE 64 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG L R SLVS + + A EL L + + VS R + D +E+LI A+ Sbjct: 65 EEGRLDRRRASLVSGKALAPKALELGLNTVLVVSEAQRTHHPEPSKGMLEDALEALIGAI 124 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRD-AKTELQEWAHA-KFGVTPEYKVTFRSG 182 YLD G++ A + + A+ G AK LQEW + G P+Y + G Sbjct: 125 YLDAGLDAARRSIRHIFAPELAAMAEGSPHDSRAKNRLQEWTQKHRQGAQPKYALIGSEG 184 Query: 183 PDHDPRFTVVVEI 195 PDH + V V + Sbjct: 185 PDHARVYHVSVSL 197 >gi|72161055|ref|YP_288712.1| ribonuclease III [Thermobifida fusca YX] gi|90101652|sp|Q47S78|RNC_THEFY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71914787|gb|AAZ54689.1| RNAse III [Thermobifida fusca YX] Length = 240 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/202 (35%), Positives = 105/202 (51%), Gaps = 11/202 (5%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +L +ALTH S ++ + ERLEFLGD +LGL+++ L+ EG+L+ ++V Sbjct: 25 ILTRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLSEGQLAKLRAAVV 84 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 + + VAREL + ++R+ +SI AD +E+LI A+YLD G++ A V Sbjct: 85 NMRALADVARELGIGRYVRLGRGEEATGGRDKSSILADTLEALIGAVYLDRGLDEASELV 144 Query: 140 DKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + + L +G D KT LQE A+ PEY V SGPDH F V Sbjct: 145 HRLFDPLIARASGLGAGL---DWKTSLQELTAAELLGVPEY-VVEESGPDHQKTFRATVR 200 Query: 195 ISGLAPAQGMDCSKRAAEQVAA 216 ++G G SK+ AEQ AA Sbjct: 201 VAGQTYGSGEGRSKKEAEQQAA 222 >gi|194014593|ref|ZP_03053210.1| ribonuclease III [Bacillus pumilus ATCC 7061] gi|194013619|gb|EDW23184.1| ribonuclease III [Bacillus pumilus ATCC 7061] Length = 247 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 107/224 (47%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS LF Sbjct: 17 QFREFQQRISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+L+ ++V + +A EL + + ++ ADV E Sbjct: 77 AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 + I ALYLD G+E F++ Y + + G F D K++LQE+ EY + Sbjct: 137 AFIGALYLDQGLEPVERFLEAYVYPK-INDGAFSHVMDFKSQLQEFVQRDGKGVLEYHIL 195 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V + G G SK+ AEQ AA E L + Sbjct: 196 HEKGPAHNREFEANVSLRGEVLGIGNGRSKKEAEQHAAQEALAK 239 >gi|73541939|ref|YP_296459.1| ribonuclease III [Ralstonia eutropha JMP134] gi|90101640|sp|Q46Z18|RNC_RALEJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|72119352|gb|AAZ61615.1| RNAse III [Ralstonia eutropha JMP134] Length = 256 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 99/190 (52%), Gaps = 5/190 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S HS Q + ERLEFLGD +L ++ +LF F Sbjct: 1 MNLDALQQRLGYRFSKPELLQQALTHRS--HSAQHN-ERLEFLGDSVLNCAVADMLFGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L+ +R+ K SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLSEVLRLGEGELKSGGFRRPSILADALEAIV 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G E A T + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDAGFEAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177 Query: 182 GPDHDPRFTV 191 G H +F V Sbjct: 178 GAAHSQQFEV 187 >gi|15901109|ref|NP_345713.1| ribonuclease III [Streptococcus pneumoniae TIGR4] gi|111658429|ref|ZP_01409108.1| hypothetical protein SpneT_02000400 [Streptococcus pneumoniae TIGR4] gi|22654070|sp|Q97QG6|RNC_STRPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|14972730|gb|AAK75353.1| ribonuclease III [Streptococcus pneumoniae TIGR4] Length = 232 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+ FA++ LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLKNHFAIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD + F+ + + +++G+F D KT LQE V Y+V Sbjct: 126 LGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|307704936|ref|ZP_07641827.1| ribonuclease III [Streptococcus mitis SK597] gi|307621550|gb|EFO00596.1| ribonuclease III [Streptococcus mitis SK597] Length = 232 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+ FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD + F+ + + +++G+F D KT LQE V Y+V Sbjct: 126 LGALLLDKDVVKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|225621561|ref|YP_002722820.1| ribonuclease III [Brachyspira hyodysenteriae WA1] gi|225216382|gb|ACN85116.1| ribonuclease III [Brachyspira hyodysenteriae WA1] Length = 243 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 115/215 (53%), Gaps = 6/215 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDSAKEG 69 + Y F N+ L +A+TH + ++ ++ +RLEFLGD +L L+IS LF + S+KEG Sbjct: 14 LKYEFRNKDHLLEAITHRTYANESKKKMKYNQRLEFLGDSVLSLIISDYLFKKYSSSKEG 73 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 LS +SLVS ++ + +++EL L F+ + + ++ D+ E+++ A+YLD Sbjct: 74 LLSKVKSSLVSQKSLADISKELKLGDFLLLGHGEEASGGRYRDNMLEDLFEAIVGAIYLD 133 Query: 130 GGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GI A FV + +K+R L F +D KT QE K +P YK ++ ++ Sbjct: 134 SGITSASKFVMRAYKERLKNLDIENFDKDYKTIFQELIQKKHKTSPIYK-SYEYYDNNHE 192 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F V ++ A G+ SK+ AE AA + L + Sbjct: 193 MFKSEVYVNDKNFALGVGKSKKEAETNAAKKALDK 227 >gi|330860319|emb|CBX70633.1| ribonuclease 3 [Yersinia enterocolitica W22703] Length = 204 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 103/201 (51%), Gaps = 6/201 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALTH S S + E RLEFLGD IL +I+ L+ F EG++S +LV T Sbjct: 3 QALTHRSASSKHNE---RLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNTL 59 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 +++ARE DL +R+ K SI AD VE+LI ++LD I + ++ Sbjct: 60 AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHTIERLILAWYH 119 Query: 145 QR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201 R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 120 SRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEPV 179 Query: 202 QGMDCSKRAAEQVAAAEVLKR 222 G S+R AEQ AA + LK+ Sbjct: 180 IGTGSSRRKAEQAAAEQALKQ 200 >gi|302872013|ref|YP_003840649.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47] gi|302574872|gb|ADL42663.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47] Length = 222 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/216 (33%), Positives = 119/216 (55%), Gaps = 9/216 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +EK +GY F +++LL+ ALTH S +HS + YERLEFLGD L L +S L+ +F E Sbjct: 4 IEKALGYKFEDKNLLKLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLYVYFPELSE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GEL+ ++V ++T S+VA +L+L + I + + SI ADV+E+L A+++ Sbjct: 64 GELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEALFGAIFI 123 Query: 129 DGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 + G + + K Q+A+ +GK D KT+LQE + + K+ ++ Sbjct: 124 ESGFDTVEKIIVNLLKPYIQKAV-AGKLFYDYKTKLQEIVQRE----GQKKIVYKDCEIL 178 Query: 186 DPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + F + I G ++G SK+ A+Q AA + L Sbjct: 179 EKKYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFL 214 >gi|251797476|ref|YP_003012207.1| ribonuclease III [Paenibacillus sp. JDR-2] gi|247545102|gb|ACT02121.1| ribonuclease III [Paenibacillus sp. JDR-2] Length = 231 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 110/217 (50%), Gaps = 6/217 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + L+ R+ F LL++A TH+S H E ERLEFLGD +L LL+S LF Sbjct: 7 NELQTRLQLRFKQLKLLKQAFTHTSYVNEHKHGTIEHNERLEFLGDAVLQLLVSEYLFAA 66 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + + EGEL+ S+V + +Q A L+L + I++ + ++ AD+ E+ Sbjct: 67 YPNRPEGELTRMRASVVCEPSLAQFAERLELGAHIQLGRGEEQLGGRQRPALLADLFEAF 126 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A++LD GIE F++ + + G +D K++LQE A K EY++ Sbjct: 127 VGAIFLDAGIERTRAFLETHMFPYIESNDYGLLVKDFKSKLQERAQHKGLGAVEYRIMEE 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 GP HD F V V I + G +K+ AEQ AAA Sbjct: 187 RGPAHDREFVVEVCIGEIPYGNGSGRTKKEAEQRAAA 223 >gi|226943497|ref|YP_002798570.1| ribonuclease III [Azotobacter vinelandii DJ] gi|259491898|sp|C1DQS2|RNC_AZOVD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226718424|gb|ACO77595.1| ribonuclease III [Azotobacter vinelandii DJ] Length = 229 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 104/211 (49%), Gaps = 8/211 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LE+++G+ F N+ L+ ALTH S + + ERLEFLGD IL + LF F A Sbjct: 6 NRLERKLGHTFKNQDLMLLALTHRSFA---SRNNERLEFLGDAILNFVAGEALFERFPQA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 KEG+LS LV ET + +AR DL +R+ S K SI AD +E+LI A+ Sbjct: 63 KEGQLSRLRARLVKGETLALLARGFDLGDHLRLGSGELKSGGFRRESILADALEALIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD G+ V W L S +D KT LQE+ ++ P Y+V G Sbjct: 123 YLDAGLNTVRERV-LGWLAGELDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGE 181 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213 H F V ++ L G S+R AEQ Sbjct: 182 PHCRTFFVECRVALLNDKTYGQGASRRIAEQ 212 >gi|312795542|ref|YP_004028464.1| ribonuclease III [Burkholderia rhizoxinica HKI 454] gi|312167317|emb|CBW74320.1| Ribonuclease III (EC 3.1.26.3) [Burkholderia rhizoxinica HKI 454] Length = 408 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 7/199 (3%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ S LE R+ Y F N LL +A+TH S S ++ E RLEFLGD +L +++ LLF Sbjct: 18 SMPLSPLESRLHYEFRNAELLRQAMTHRSHSATHNE---RLEFLGDSVLNCVVAALLFQR 74 Query: 63 FDSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+LS VR N LV ++ ++A+ L++A +R+ + SI AD E+ Sbjct: 75 FGKLDEGDLSRVRAN-LVKQQSLYEIAQALNIAEALRLGEGELRSGGFRRPSILADTFEA 133 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++ A++LDGG + A T + + + + +DAKT LQE+ P Y V Sbjct: 134 VLGAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPSYAVIA 193 Query: 180 RSGPDHDPRFTVVVEISGL 198 +G H+ +F V + L Sbjct: 194 TTGAAHNQQFEVECTVPKL 212 >gi|325981700|ref|YP_004294102.1| ribonuclease III [Nitrosomonas sp. AL212] gi|325531219|gb|ADZ25940.1| ribonuclease III [Nitrosomonas sp. AL212] Length = 237 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 106/211 (50%), Gaps = 10/211 (4%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +R+GY F LL+ ALTH S HS + ERLEFLGD IL +IS +++ HF EG Sbjct: 19 ERLGYCFTQSHLLQTALTHRS--HSLPHN-ERLEFLGDAILNCVISGIIYKHFPELPEGH 75 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 LS + V+ + S +A L + +R+ K SI AD E+L+ A+YLD Sbjct: 76 LSRLRANFVNQKALSSIALNLQMDKLLRLGEGELKSGGCHRPSILADTFEALLGAIYLDS 135 Query: 131 GIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 T V + + L+S +D KT LQE+ ++ PEY V SG H Sbjct: 136 DYAQVETVVMAIYLPLIQNIDLESPA--KDPKTLLQEFLQSQKLSLPEYLVVTTSGKAHK 193 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAA 216 +F V IS L G ++R+AEQVAA Sbjct: 194 QKFKVECVISTLNIRTAGEGTNRRSAEQVAA 224 >gi|138894713|ref|YP_001125166.1| ribonuclease III [Geobacillus thermodenitrificans NG80-2] gi|196247668|ref|ZP_03146370.1| Ribonuclease III [Geobacillus sp. G11MC16] gi|189043318|sp|A4IM67|RNC_GEOTN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|134266226|gb|ABO66421.1| Ribonuclease III [Geobacillus thermodenitrificans NG80-2] gi|196212452|gb|EDY07209.1| Ribonuclease III [Geobacillus sp. G11MC16] Length = 246 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 107/223 (47%), Gaps = 7/223 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLF 60 ++ L+K+IG F N LL +A THSS + + E ERLEFLGD +L L +S LF Sbjct: 17 KFQELQKKIGITFQNEKLLIQAFTHSSYVNEHRRRFHEDNERLEFLGDAVLELTVSQYLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+L+ ++V + + A L + + ++ ADV E Sbjct: 77 QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 + I ALYLD G++V F+ + + + G F D K++LQE T EY + Sbjct: 137 AFIGALYLDQGMDVVLRFLGQTMFPK-IDEGAFSHVMDFKSQLQELVQRDGSGTLEYAIL 195 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H+ F V ++G G+ SK+ AEQ AA L+ Sbjct: 196 EEKGPAHNKEFVARVALNGQELGVGVGRSKKEAEQHAAQMALE 238 >gi|71064909|ref|YP_263636.1| ribonuclease III [Psychrobacter arcticus 273-4] gi|90101639|sp|Q4FUV6|RNC_PSYA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71037894|gb|AAZ18202.1| RNAse III [Psychrobacter arcticus 273-4] Length = 265 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 19/223 (8%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 R + L +++GY F + SL + ALTH S +++YERLEFLGD +LG+++ L++ + Sbjct: 33 RLAVLTRKLGYVFNDLSLAKLALTHRSFDS--KKNYERLEFLGDALLGMIVGEALYHRYP 90 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG L+ +LV E+ +A+ L+L++ + + RK SI AD VESLI Sbjct: 91 TQNEGRLTRMRATLVRQESLVIIAQNLELSNQLILGVGERKGGGRNRASILADAVESLIG 150 Query: 125 ALYLDGG---------IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 A+YLD + G +D Q+ALK DAK+ LQEW +K P Y Sbjct: 151 AIYLDSQDMNITRECVLSWYGDLIDNVNDQKALK------DAKSRLQEWLQSKQFDLPHY 204 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDC--SKRAAEQVAA 216 ++ G F V +++ + + S+R AEQ AA Sbjct: 205 ELMETRGNAPHQLFVVRCQVNIINCPDITESGESRRIAEQKAA 247 >gi|319649604|ref|ZP_08003760.1| rnc protein [Bacillus sp. 2_A_57_CT2] gi|317398766|gb|EFV79448.1| rnc protein [Bacillus sp. 2_A_57_CT2] Length = 246 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 109/226 (48%), Gaps = 10/226 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ + IG F N LL++A THSS + ++ E ERLEFLGD +L L +S L+ Sbjct: 18 QFKEFQTEIGIQFENEKLLKQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTVSKFLY 77 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EGEL+ ++V + A L S + + ++ ADV E Sbjct: 78 LKYPMMSEGELTKLRAAVVCEPSLVSFAHALSFGSLVLLGKGEEMTGGRTRPALLADVFE 137 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 + I ALYLD G++ F++K + + SG F D K++LQE T EYK+ Sbjct: 138 AFIGALYLDKGLDTVVGFLEKVVFPK-IDSGAFSHVMDFKSQLQELVQRDGAGTIEYKIL 196 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLK 221 GP H+ F V ++G G SK+ AEQ AA EVLK Sbjct: 197 QEKGPAHNREFVSTVSLNGRELGTGTGRSKKEAEQHAAQMALEVLK 242 >gi|254490771|ref|ZP_05103954.1| ribonuclease III [Methylophaga thiooxidans DMS010] gi|224463943|gb|EEF80209.1| ribonuclease III [Methylophaga thiooxydans DMS010] Length = 227 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 112/225 (49%), Gaps = 10/225 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M R L K++ F LL +ALTH S + ++ ERLE+LGD IL +I+ LF Sbjct: 1 MITQRQKALCKQLEITFKKTDLLLQALTHRS---ADPKNNERLEYLGDAILSFVIAEELF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N F KEG+LS SLV ET +++AREL L + + K SI AD VE Sbjct: 58 NRFPQVKEGKLSRLRASLVKGETLAELARELKLGDVLILGPGELKSGGFRRESILADAVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ ALYLDGG+E + + +++R + + +D KT LQE ++ P Y V Sbjct: 118 AILGALYLDGGLESVKALILRLYQERLDNIDVTETVKDPKTRLQELLQSRKQPLPIYSVK 177 Query: 179 FRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVL 220 P F +++ L AQG S R AE+ AA L Sbjct: 178 EVKTDKKHPAFEASCQVTLLDKVVVAQG--SSHRKAEKKAAERAL 220 >gi|225571976|ref|ZP_03780840.1| hypothetical protein RUMHYD_00270 [Blautia hydrogenotrophica DSM 10507] gi|225040509|gb|EEG50755.1| hypothetical protein RUMHYD_00270 [Blautia hydrogenotrophica DSM 10507] Length = 244 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/201 (34%), Positives = 106/201 (52%), Gaps = 7/201 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64 LEK +GY F + +LL++A+THSS S+ ERLEFLGD +L ++ S L+ F Sbjct: 15 LEKELGYQFRDINLLKQAVTHSSYSNEKNMGKLGCNERLEFLGDAVLEVISSEFLYQKFP 74 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EGEL+ + S+V T + ARE+ L +++ + SI +D +E++I Sbjct: 75 ILQEGELTKKRASMVCEPTLALCAREIRLDNYLLLGHGEENTGGRKRDSIVSDALEAVIG 134 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG+ A F+ K+ ++ + D+KT LQE Y++ GPD Sbjct: 135 AIYLDGGLASAKEFILKHV-LNDMEHKQLFYDSKTILQEIVQEHGNNPVSYQLIREDGPD 193 Query: 185 HDPRFTVVVEISG--LAPAQG 203 H+ FTV V + L QG Sbjct: 194 HNKIFTVEVRVKQEVLGVGQG 214 >gi|206603444|gb|EDZ39924.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG'] Length = 375 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 117/244 (47%), Gaps = 34/244 (13%) Query: 13 IGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +G F +E+ALTH S SH + +YERLEFLGDR++GL++S L N + SA Sbjct: 25 LGLPFKPTMRIEEALTHRSASHERGRKTPIPNYERLEFLGDRVIGLIVSEYLLNTWPSAS 84 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG++ F+ +VS +T + +AR +DL S++ + +S+ AD ESL AA+Y Sbjct: 85 EGDIGQIFSGIVSTQTLASIARRMDLGSYMILGKGSHSSGDRENSSLLADTFESLAAAIY 144 Query: 128 LDGGIEVAGTFVDKYWKQ------RALKSGKFRRDA-----------------------K 158 L+ G+E + ++ Q + +++ + RD+ K Sbjct: 145 LEYGLETCRQVLIPWFTQPLIEIVQKIENLREVRDSSSGPVSSVIAAQPAPPRAGSLNFK 204 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 LQ+W +K P Y+V GP H RF + V + G + +KR A AA Sbjct: 205 LLLQKWCQSKAEELPVYQVLEEIGPAHQRRFRLGVFLKGKQLGEAEGTTKRGASVHAAKN 264 Query: 219 VLKR 222 +R Sbjct: 265 AWER 268 >gi|28378329|ref|NP_785221.1| ribonuclease III [Lactobacillus plantarum WCFS1] gi|254556537|ref|YP_003062954.1| ribonuclease III [Lactobacillus plantarum JDM1] gi|300767266|ref|ZP_07077178.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180480|ref|YP_003924608.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258332|sp|Q88WK0|RNC_LACPL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28271164|emb|CAD64069.1| ribonuclease III [Lactobacillus plantarum WCFS1] gi|254045464|gb|ACT62257.1| ribonuclease III [Lactobacillus plantarum JDM1] gi|300495085|gb|EFK30241.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045971|gb|ADN98514.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ST-III] Length = 231 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 111/216 (51%), Gaps = 7/216 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62 + L++R G F + LL +A T +S + +Q+ YER+EFLGD +L L++S L+ Sbjct: 7 AMLKERFGIVFNDPDLLAEAFTQASYVNEHQDQQLKYYERVEFLGDAVLELVVSEYLYKR 66 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + +G+L+ ++V E+ + ARE D +IR+ +K S+ D+ ES Sbjct: 67 YKDMPQGKLTRLRAAMVCEESFASFARECDFPQYIRLGKGEQKAHAWERDSLLCDIFESF 126 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + ALYLD G E FV + + L G+F D KT LQE+ V +Y++ + Sbjct: 127 VGALYLDQGREPVLKFVHQVIFPK-LDEGRFDGVFDYKTTLQEYLQRDGDVAIDYQLIEQ 185 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GP ++ + + V G +G SK+ AEQ AA Sbjct: 186 DGPANERSYEIAVLADGQKIGEGWGHSKKEAEQSAA 221 >gi|94989948|ref|YP_598048.1| ribonuclease III [Streptococcus pyogenes MGAS10270] gi|189043365|sp|Q1JI19|RNC_STRPD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|94543456|gb|ABF33504.1| Ribonuclease III [Streptococcus pyogenes MGAS10270] Length = 230 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 110/210 (52%), Gaps = 7/210 (3%) Query: 17 FANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F + +LLE A TH+S ++ ++ ERLEFLGD +L L+IS LF + EG++S Sbjct: 16 FNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMS 75 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + +V E+ + +R ++I++ K +I D+ E+ + AL LD GI Sbjct: 76 KLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGI 135 Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 + F+ + + K G F R D KT LQE+ AK V +Y+V GP H +F Sbjct: 136 DAVRRFLKQVMIPQVEK-GNFERVKDYKTCLQEFLQAKGDVVIDYQVISEKGPAHAKQFE 194 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V + ++G ++G+ SK+ AEQ AA L Sbjct: 195 VSIVVNGAVLSKGLGKSKKLAEQDAAKNAL 224 >gi|94970880|ref|YP_592928.1| ribonuclease III [Candidatus Koribacter versatilis Ellin345] gi|94552930|gb|ABF42854.1| RNAse III [Candidatus Koribacter versatilis Ellin345] Length = 258 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 101/205 (49%), Gaps = 16/205 (7%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS---------HSYQESYERLEFLGDRILGLLIST 57 + LEK + + F + LL +ALTHSS + +S E+LEF+GD +L + S Sbjct: 8 AALEKALDHKFEEQELLVRALTHSSYAREQRDHIHDNSVPNDNEQLEFIGDSVLAFVTSQ 67 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L F +EGELS LVSA Q AR LDL F+R+ + ++I D Sbjct: 68 ELVKKFPHFQEGELSKLRAYLVSARHLIQTARNLDLGKFLRLGRGEERSGGRSKSAILVD 127 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-------DAKTELQEWAHAKFG 170 +E++IAA+YLDGG+ VA F+ + + LK + D K+ LQE AHA Sbjct: 128 ALEAVIAAIYLDGGLRVAQKFILREIVRPELKRMETEHGSALPVTDYKSALQEQAHAAGR 187 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEI 195 Y V GP+H FTV I Sbjct: 188 KRIVYAVVKEEGPEHRKTFTVEARI 212 >gi|325849059|ref|ZP_08170551.1| ribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480304|gb|EGC83367.1| ribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 238 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 121/222 (54%), Gaps = 17/222 (7%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY F N++L++ ALTHSS + ++ S ERLEFLGD IL L++S L+ + S E Sbjct: 18 IGYIFKNKNLIDVALTHSSYINESKDKNRSSNERLEFLGDSILDLVVSEELYKNHKSYPE 77 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI-----RVSSDLRKDVCSFMTSIQADVVESLI 123 G+L+ + +V + S+ + + +L+S++ +S + R+ S++AD E+ Sbjct: 78 GKLTKIRSRIVCTSSFSKASEKFNLSSYLLFGKGEISHNGREK-----KSVKADTFEAFC 132 Query: 124 AALYLDGGIEVAGTF-VDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 AA+YLD G F ++ Y++ + L++ D KT+LQE+ + +YK+ Sbjct: 133 AAIYLDAGYVFLKNFLMENYYQTVKELLENDLLFIDYKTKLQEYFNKTNRTILKYKLAKE 192 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP+H+ F + V + G +K+ AEQ+AA + K+ Sbjct: 193 EGPEHNKTFYMDVYAKNKKLSTGKGKNKKEAEQMAAMKAYKK 234 >gi|299067031|emb|CBJ38226.1| Ribonuclease III (RNase III) [Ralstonia solanacearum CMR15] Length = 256 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 107/211 (50%), Gaps = 6/211 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++R+ Y F+ LL++ALTH S + + E RLEFLGD IL ++ +L+ F E Sbjct: 6 LQQRLDYRFSKPELLQQALTHRSHNAMHNE---RLEFLGDSILNCAVADMLYGMFGKLDE 62 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV + ++A+ L L +R+ K SI AD +E++ A++L Sbjct: 63 GDLSRVRANLVKQQALYEIAQMLLLPDELRLGEGELKSGGFRRPSILADALEAIFGAVFL 122 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 DGG + A T + K + + +DAKT LQE+ P+Y V G H+ Sbjct: 123 DGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATHGAAHN 182 Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216 +F V I L G S+RAAEQ AA Sbjct: 183 QQFEVECTIPKLEIRVSGSGASRRAAEQSAA 213 >gi|317059911|ref|ZP_07924396.1| ribonuclease 3 [Fusobacterium sp. D12] gi|313685587|gb|EFS22422.1| ribonuclease 3 [Fusobacterium sp. D12] Length = 235 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 114/224 (50%), Gaps = 9/224 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LE I Y F +++LL+ AL H S + ++ + ERLE LGD +LGL+++ L+ + Sbjct: 11 LEHNINYYFNDKNLLKNALIHRSFGNEHRTYKNINNERLELLGDAVLGLVVAEYLYQKYP 70 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 KEG L+ + VS S V+R+L + ++ +S SI D E+++ Sbjct: 71 KEKEGVLAKIKSMAVSEPVLSGVSRKLHIGDYLLLSKGEIVTGGRDRNSILGDAFEAILG 130 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G A +V + K+ F D KT LQE KF P+Y + G Sbjct: 131 AIYLDSGFFAAKEYVLFHLKEIIDHIDDFEEILDFKTILQEHCQKKFKEIPKYTLLREEG 190 Query: 183 PDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PDH F + V+I +A A+G +K+ AEQ AA ++ K G+ Sbjct: 191 PDHRKLFEMQVQIQDKVARAKG--NNKKIAEQKAAKKLCKEMGV 232 >gi|270290359|ref|ZP_06196584.1| ribonuclease III [Pediococcus acidilactici 7_4] gi|270281140|gb|EFA26973.1| ribonuclease III [Pediococcus acidilactici 7_4] Length = 232 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/212 (33%), Positives = 109/212 (51%), Gaps = 7/212 (3%) Query: 17 FANRSLLEKALTHSSI--SHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F LL++A T +S H +Q + YER+EFLGD +L L++S L+ + +G+L+ Sbjct: 17 FTKHELLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVLQLVVSEYLYKRYPEMPQGKLT 76 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 ++V + S A+E +IR+ K S+ D+ ES I ALYLD G Sbjct: 77 RLRAAMVCEASFSDFAKECHFDRYIRLGKGEEKSGARQRPSLLCDIFESFIGALYLDQGR 136 Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 + FV + + L G+F D K+ELQE V Y++ +GPD+D FT Sbjct: 137 QAVEKFVRQVIFPK-LDEGRFDHIIDHKSELQELLQRNGEVEINYELISETGPDNDLVFT 195 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V V + A+G SK+AAEQ AA + L++ Sbjct: 196 VQVSAANQVLAKGSGHSKKAAEQNAANKALQK 227 >gi|297530632|ref|YP_003671907.1| ribonuclease III [Geobacillus sp. C56-T3] gi|297253884|gb|ADI27330.1| ribonuclease III [Geobacillus sp. C56-T3] Length = 246 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 108/223 (48%), Gaps = 7/223 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L+K+IG F N LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 17 KFQELQKKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+L+ ++V + + A L + + ++ ADV E Sbjct: 77 QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 + I ALYLD G++ F++K + + G F D K++LQE T EY + Sbjct: 137 AFIGALYLDQGMDAVIRFLEKTMFPK-IDEGAFSHVMDFKSQLQELVQRDGSGTLEYAIL 195 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H+ F V ++G G+ SK+ AEQ AA L+ Sbjct: 196 EEKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALE 238 >gi|91775216|ref|YP_544972.1| ribonuclease III [Methylobacillus flagellatus KT] gi|91775360|ref|YP_545116.1| ribonuclease III [Methylobacillus flagellatus KT] gi|91709203|gb|ABE49131.1| RNAse III [Methylobacillus flagellatus KT] gi|91709347|gb|ABE49275.1| RNAse III [Methylobacillus flagellatus KT] Length = 248 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/197 (34%), Positives = 101/197 (51%), Gaps = 5/197 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L ++L +++ Y F ++ LL ALTH S S S + ERLEFLGD +L L++ LF Sbjct: 21 AVLSQNSLVRQLAYEFKDKGLLTLALTHRSYSGS---NNERLEFLGDGVLNFLVAHQLFL 77 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+LS LV +T S++A EL + F+R+ K S+ AD +E+ Sbjct: 78 RFPKLPEGDLSRLRAQLVKEQTLSEIATELSVGEFLRLGEGELKSGGWRRPSVLADAMEA 137 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +I A++LDGG A V + + R + +DAK+ LQE+ + PEY V Sbjct: 138 IIGAVFLDGGYPAAEALVKRLFLPRMEGIDPKAIGKDAKSLLQEFLQGRKIDLPEYNVLA 197 Query: 180 RSGPDHDPRFTVVVEIS 196 G H F V I+ Sbjct: 198 TEGEAHCQTFRVSCHIT 214 >gi|304384763|ref|ZP_07367109.1| ribonuclease III [Pediococcus acidilactici DSM 20284] gi|304328957|gb|EFL96177.1| ribonuclease III [Pediococcus acidilactici DSM 20284] Length = 235 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/212 (33%), Positives = 109/212 (51%), Gaps = 7/212 (3%) Query: 17 FANRSLLEKALTHSSI--SHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F LL++A T +S H +Q + YER+EFLGD +L L++S L+ + +G+L+ Sbjct: 20 FTKHELLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVLQLVVSEYLYKRYPEMPQGKLT 79 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 ++V + S A+E +IR+ K S+ D+ ES I ALYLD G Sbjct: 80 RLRAAMVCEASFSDFAKECHFDRYIRLGKGEEKSGARQRPSLLCDIFESFIGALYLDQGR 139 Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 + FV + + L G+F D K+ELQE V Y++ +GPD+D FT Sbjct: 140 QAVEKFVRQVIFPK-LDEGRFDHIIDHKSELQELLQRNGEVEINYELISETGPDNDLVFT 198 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V V + A+G SK+AAEQ AA + L++ Sbjct: 199 VQVSAANQVLAKGSGHSKKAAEQNAANKALQK 230 >gi|124516572|gb|EAY58080.1| ribonuclease III [Leptospirillum rubarum] Length = 377 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 116/244 (47%), Gaps = 34/244 (13%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +G F +E+ALTH S SH +YERLEFLGDR++GL++S L N + SA Sbjct: 25 LGLPFKPTMRIEEALTHRSASHERGRKTPIPNYERLEFLGDRVIGLIVSEYLLNTWPSAS 84 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG++ F+ +VS +T + +AR +DL S++ + +S+ AD ESL AA+Y Sbjct: 85 EGDIGQIFSGIVSTQTLASIARRMDLGSYMILGKGSHSSGDRENSSLLADTFESLAAAIY 144 Query: 128 LDGGIEVAGTFVDKYWKQ------RALKSGKFRRDA-----------------------K 158 L+ G+E + ++ Q + +++ + RD+ K Sbjct: 145 LEYGLETCRQVLIPWFTQPLIEIVQKIENLREIRDSSSGPGSSVIATQPAPPRAGSLNYK 204 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 LQ+W +K P Y+V GP H RF + V + G + +KR A AA Sbjct: 205 LLLQKWCQSKAEELPVYQVLEEIGPAHQRRFRLGVFLKGKQLGEAEGTTKRGASVHAAKN 264 Query: 219 VLKR 222 +R Sbjct: 265 AWER 268 >gi|261419391|ref|YP_003253073.1| ribonuclease III [Geobacillus sp. Y412MC61] gi|319766206|ref|YP_004131707.1| ribonuclease III [Geobacillus sp. Y412MC52] gi|261375848|gb|ACX78591.1| ribonuclease III [Geobacillus sp. Y412MC61] gi|317111072|gb|ADU93564.1| ribonuclease III [Geobacillus sp. Y412MC52] Length = 246 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 108/223 (48%), Gaps = 7/223 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L+K+IG F N LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 17 KFQELQKKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+L+ ++V + + A L + + ++ ADV E Sbjct: 77 QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 + I ALYLD G++ F++K + + G F D K++LQE T EY + Sbjct: 137 AFIGALYLDQGMDAVIRFLEKTMFPK-IDEGAFSHVMDFKSQLQELVQRDGSGTLEYAIL 195 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H+ F V ++G G+ SK+ AEQ AA L+ Sbjct: 196 EEKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALE 238 >gi|319758292|gb|ADV70234.1| dsRNA-specific ribonuclease [Streptococcus suis JS14] Length = 228 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 107/225 (47%), Gaps = 7/225 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 ++ L G F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS L+ Sbjct: 5 HAKLLDDFGIDFSDLNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLMISKYLYQ 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGE+S ++ V E+ + +R F+R+ K +I D E+ Sbjct: 65 KYPDRPEGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILGDAFEA 124 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 + AL LD G + F+ K R L+ G F R D KT LQE + Y+V Sbjct: 125 FLGALLLDKGEKTVEEFIHKVMIPR-LEKGNFERVTDYKTALQEILQVNGEIAISYQVIA 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP HD F V V +G SK+ AEQ AA ++ G Sbjct: 184 ESGPAHDKTFEVEVSADQRVIGRGRGRSKKLAEQAAAKNAVEARG 228 >gi|257462242|ref|ZP_05626659.1| ribonuclease III [Fusobacterium sp. D12] Length = 232 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 114/224 (50%), Gaps = 9/224 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LE I Y F +++LL+ AL H S + ++ + ERLE LGD +LGL+++ L+ + Sbjct: 8 LEHNINYYFNDKNLLKNALIHRSFGNEHRTYKNINNERLELLGDAVLGLVVAEYLYQKYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 KEG L+ + VS S V+R+L + ++ +S SI D E+++ Sbjct: 68 KEKEGVLAKIKSMAVSEPVLSGVSRKLHIGDYLLLSKGEIVTGGRDRNSILGDAFEAILG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G A +V + K+ F D KT LQE KF P+Y + G Sbjct: 128 AIYLDSGFFAAKEYVLFHLKEIIDHIDDFEEILDFKTILQEHCQKKFKEIPKYTLLREEG 187 Query: 183 PDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PDH F + V+I +A A+G +K+ AEQ AA ++ K G+ Sbjct: 188 PDHRKLFEMQVQIQDKVARAKG--NNKKIAEQKAAKKLCKEMGV 229 >gi|146321055|ref|YP_001200766.1| dsRNA-specific ribonuclease [Streptococcus suis 98HAH33] gi|253751930|ref|YP_003025071.1| ribonuclease III [Streptococcus suis SC84] gi|253753753|ref|YP_003026894.1| ribonuclease III [Streptococcus suis P1/7] gi|253755369|ref|YP_003028509.1| ribonuclease III [Streptococcus suis BM407] gi|145691861|gb|ABP92366.1| dsRNA-specific ribonuclease [Streptococcus suis 98HAH33] gi|251816219|emb|CAZ51846.1| ribonuclease III [Streptococcus suis SC84] gi|251817833|emb|CAZ55586.1| ribonuclease III [Streptococcus suis BM407] gi|251819999|emb|CAR46159.1| ribonuclease III [Streptococcus suis P1/7] gi|292558506|gb|ADE31507.1| Ribonuclease III [Streptococcus suis GZ1] Length = 228 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 104/217 (47%), Gaps = 7/217 (3%) Query: 14 GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 G F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS L+ + EG Sbjct: 13 GIDFSDLNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLMISKYLYQKYPDRPEG 72 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 E+S ++ V E+ + +R F+R+ K +I D E+ + AL LD Sbjct: 73 EMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILGDAFEAFLGALLLD 132 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G + F+ K R L+ G F R D KT LQE + Y+V SGP HD Sbjct: 133 KGEKTVEEFIHKVMIPR-LEKGNFERVTDYKTALQEILQVNGEIAISYQVIAESGPAHDK 191 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F V V +G SK+ AEQ AA ++ G Sbjct: 192 TFEVEVSADQRVIGRGRGRSKKLAEQAAAKNAVEARG 228 >gi|116333590|ref|YP_795117.1| dsRNA-specific ribonuclease [Lactobacillus brevis ATCC 367] gi|116098937|gb|ABJ64086.1| dsRNA-specific ribonuclease [Lactobacillus brevis ATCC 367] Length = 229 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 112/219 (51%), Gaps = 7/219 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI--SHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 L+ R F ++SLL++A T +S H +Q + YER+EFLGD ++ L++S +F + Sbjct: 9 LKDRFDIHFKDQSLLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVMQLVVSNYIFRRYP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + +G L+ ++V+ ++ + ARE +IR+ K S+ D+ ES I Sbjct: 69 AMPQGRLTRLRAAMVNEQSFASFARECHFDQYIRLGRGEEKAQARQRDSLLCDIFESFIG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALY+D G++ FV + L G+F D KTELQE V +Y++ G Sbjct: 129 ALYMDQGLDKVVEFVTTVVFPK-LDEGRFDEFFDHKTELQELVQKNGPVDIDYRLLDEEG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 PD+D F V V + +G SK+ AEQ AA L+ Sbjct: 188 PDNDRAFKVAVYVDDKLLGEGHGHSKKHAEQNAARHALE 226 >gi|170725604|ref|YP_001759630.1| ribonuclease III [Shewanella woodyi ATCC 51908] gi|238688672|sp|B1KI57|RNC_SHEWM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|169810951|gb|ACA85535.1| Ribonuclease III [Shewanella woodyi ATCC 51908] Length = 225 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/203 (34%), Positives = 105/203 (51%), Gaps = 5/203 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + +GY F+ +LL+ ALTH S + + E RLEFLGD IL ++IS L++ F A E Sbjct: 10 LCRTLGYDFSELALLDHALTHRSAASKHNE---RLEFLGDSILSIIISDALYHQFPKATE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV + +++ E L ++++ K SI AD VE++I A+YL Sbjct: 67 GDLSRMRATLVCGKMLAEIGFEFKLGDYLKLGPGELKSGGFRRESIIADAVEAIIGAVYL 126 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 D +EV + V ++K R ++D KT LQE P YKVT G H Sbjct: 127 DSDLEVTRSLVLGWYKTRLETIQPINQKDPKTLLQELLQGYKKPLPVYKVTDIRGEAHAQ 186 Query: 188 RFTVVVEISGL-APAQGMDCSKR 209 FT+ + L P G+ S+R Sbjct: 187 TFTIECYVEELRKPVVGVASSRR 209 >gi|294784571|ref|ZP_06749860.1| ribonuclease III [Fusobacterium sp. 3_1_27] gi|294487787|gb|EFG35146.1| ribonuclease III [Fusobacterium sp. 3_1_27] Length = 234 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 123/226 (54%), Gaps = 13/226 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ ++ Sbjct: 7 LEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLYKNYK 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS---FMTSIQADVVES 121 +A EG ++ +VS ++++R++ + F+ +S R +V S SI AD E+ Sbjct: 67 NASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLS---RGEVMSGGRNRESILADSFEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++ A+Y+D ++ A F + KQ ++ + D K+ LQE+ +F P Y++ Sbjct: 124 ILGAVYMDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPTYELIA 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDH F + V I G + + +K+ AEQ++A + + G+ Sbjct: 184 ERGPDHMKEFEIQV-IVGNYKEKAVARNKKKAEQLSAKALCIKLGV 228 >gi|46579851|ref|YP_010659.1| ribonuclease III [Desulfovibrio vulgaris str. Hildenborough] gi|81404810|sp|Q72C44|RNC_DESVH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|46449267|gb|AAS95918.1| ribonuclease III [Desulfovibrio vulgaris str. Hildenborough] Length = 253 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 111/215 (51%), Gaps = 7/215 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 L+K IG+ F + LL A+THSS ++ E ERLEFLGD +L L +S LF F S Sbjct: 32 LQKTIGHRFGDMELLLTAMTHSSWANEQAVPVEHNERLEFLGDAVLELCVSEELFRRFPS 91 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EG+L+ + LVS + VAREL L +R+ S+ +D +E+++ A Sbjct: 92 AREGDLTRMRSRLVSKPSLEGVARELRLDMSLRLGKGEESQGGRERGSLLSDALEAMLGA 151 Query: 126 LYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ++LD G A V + AL + +D K++LQE F P Y + SG Sbjct: 152 VFLDAGYIAAKGVVMRILGPHFPEALVPVR-TKDYKSQLQELTQKLFRDRPVYTLLGSSG 210 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 P+HD +F V V + + S + AEQ+AAA Sbjct: 211 PEHDKQFDVRVVLPDGTVFEATGPSMKRAEQMAAA 245 >gi|15903170|ref|NP_358720.1| ribonuclease III [Streptococcus pneumoniae R6] gi|116517072|ref|YP_816576.1| ribonuclease III [Streptococcus pneumoniae D39] gi|148989271|ref|ZP_01820651.1| ribonuclease III [Streptococcus pneumoniae SP6-BS73] gi|148998680|ref|ZP_01826119.1| ribonuclease III [Streptococcus pneumoniae SP11-BS70] gi|168575703|ref|ZP_02721618.1| ribonuclease III [Streptococcus pneumoniae MLV-016] gi|194398097|ref|YP_002037848.1| ribonuclease III [Streptococcus pneumoniae G54] gi|307067896|ref|YP_003876862.1| dsRNA-specific ribonuclease [Streptococcus pneumoniae AP200] gi|73917586|sp|Q8DPJ8|RNC_STRR6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122278538|sp|Q04K72|RNC_STRP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741378|sp|B5E4Y2|RNC_STRP4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|15458754|gb|AAK99930.1| Ribonuclease III [Streptococcus pneumoniae R6] gi|116077648|gb|ABJ55368.1| ribonuclease III [Streptococcus pneumoniae D39] gi|147755517|gb|EDK62565.1| ribonuclease III [Streptococcus pneumoniae SP11-BS70] gi|147925249|gb|EDK76328.1| ribonuclease III [Streptococcus pneumoniae SP6-BS73] gi|183578209|gb|EDT98737.1| ribonuclease III [Streptococcus pneumoniae MLV-016] gi|194357764|gb|ACF56212.1| ribonuclease III [Streptococcus pneumoniae G54] gi|306409433|gb|ADM84860.1| dsRNA-specific ribonuclease [Streptococcus pneumoniae AP200] Length = 232 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+ FA++ LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLKNHFEIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD + F+ + + +++G+F D KT LQE V Y+V Sbjct: 126 LGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|312135000|ref|YP_004002338.1| ribonuclease iii [Caldicellulosiruptor owensensis OL] gi|311775051|gb|ADQ04538.1| ribonuclease III [Caldicellulosiruptor owensensis OL] Length = 222 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/216 (33%), Positives = 118/216 (54%), Gaps = 9/216 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +EK +GY F +++LL ALTH S +HS + YERLEFLGD L L +S L+ +F E Sbjct: 4 IEKALGYKFEDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLYVYFPELSE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GEL+ ++V ++T S+VA +L+L + I + + SI ADV+E+L A+++ Sbjct: 64 GELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFYENKSILADVLEALFGAIFI 123 Query: 129 DGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 + G + + K Q+A+ +GK D KT+LQE + + K+ ++ Sbjct: 124 ESGFDTVEKIIVNLLKPYIQKAV-AGKLFYDYKTKLQEIVQRE----GQKKIVYKDCEIL 178 Query: 186 DPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + F + I G ++G SK+ A+Q AA + L Sbjct: 179 EKKYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFL 214 >gi|332074858|gb|EGI85330.1| ribonuclease III [Streptococcus pneumoniae GA41301] Length = 232 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 109/222 (49%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+ F +++LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLKNHFAIEFTDKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD + F+ + + +++G+F D KT LQE V Y+V Sbjct: 126 LGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVVIRYQVISE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|258405510|ref|YP_003198252.1| ribonuclease III [Desulfohalobium retbaense DSM 5692] gi|257797737|gb|ACV68674.1| ribonuclease III [Desulfohalobium retbaense DSM 5692] Length = 237 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 115/221 (52%), Gaps = 9/221 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDS 65 +++R+ Y F ++ LL ALTHSS ++ + QE ERLEFLGD +L L IS L+ + Sbjct: 9 VQQRLQYTFRDQQLLLLALTHSSYANEHPHIQEHNERLEFLGDAVLELAISEELYLRYPE 68 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EG L+ + LVS + + R+L++A + + +I DV+ES+ A Sbjct: 69 APEGSLTSLRSKLVSEPALAALGRQLEIAPALFLGRGEESQGGRERDAILCDVMESIFGA 128 Query: 126 LYLDGGIEVAGT-----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++LD + A T +VDK+ +L + RD K+ LQE F P Y + Sbjct: 129 IFLDSDYDRAKTCILELYVDKWPSAPSLGHERL-RDFKSRLQECTQQLFKDRPVYHLVDS 187 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +GP+H + V V++ + A D S + AEQ AA + L+ Sbjct: 188 TGPEHAKVYHVRVDLPNGSQASAADSSVKKAEQQAARKALE 228 >gi|116492609|ref|YP_804344.1| ribonuclease III [Pediococcus pentosaceus ATCC 25745] gi|122265927|sp|Q03FX0|RNC_PEDPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116102759|gb|ABJ67902.1| RNAse III [Pediococcus pentosaceus ATCC 25745] Length = 232 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 74/211 (35%), Positives = 106/211 (50%), Gaps = 7/211 (3%) Query: 17 FANRSLLEKALTHSSI--SHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N +LL++A T +S H +QE YER+EFLGD +L L++S LF + +G+L+ Sbjct: 17 FNNHALLDEAFTQASYVNEHPHQELKFYERIEFLGDAVLQLIVSEYLFKRYPEMPQGKLT 76 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 ++V + S A+E +IR+ K +S+ D+ ES I ALYLD G Sbjct: 77 RLRAAMVCEASFSDFAKECHFDQYIRLGKGEEKSGARQRSSLLCDIFESFIGALYLDQGR 136 Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 FV + L GKF D K+ELQE V +Y++ GP++D FT Sbjct: 137 AAVERFV-RIVIFPKLDEGKFDHIIDHKSELQELLQKNGDVEIDYELVSEEGPENDLIFT 195 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V V A G SK+ AEQ AA + L+ Sbjct: 196 VSVTADHKKLATGTGHSKKVAEQNAANQALQ 226 >gi|332977456|gb|EGK14231.1| ribonuclease III [Psychrobacter sp. 1501(2011)] Length = 273 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 115/227 (50%), Gaps = 19/227 (8%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 ++L+K +GY F + SL + ALTH S +YERLEFLGD +LG++I L+ + + Sbjct: 41 ASLQKVLGYTFKDTSLAKLALTHRSFDGKI--NYERLEFLGDALLGMIIGEALYYQYPNQ 98 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ +LV E+ VA++L+L+S + + RK SI AD VESLI A+ Sbjct: 99 NEGRLTRMRATLVRQESLVIVAQKLNLSSHLILGVGERKGGGRERASILADTVESLIGAI 158 Query: 127 YLDG-GIEVA--------GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 YLD ++V ++ QR LK DAK+ LQEW P+Y++ Sbjct: 159 YLDSQSVDVVKACVLDWFAELINNVNDQRVLK------DAKSRLQEWLQGHKYELPKYEL 212 Query: 178 TFRSGPDHDPRFTV--VVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G + F V VE+ P S+R AEQ A +++ + Sbjct: 213 LETQGNAPNQIFIVRCEVEVPHSTPIIESGESRRIAEQKTAEKMINQ 259 >gi|294500965|ref|YP_003564665.1| ribonuclease III [Bacillus megaterium QM B1551] gi|294350902|gb|ADE71231.1| ribonuclease III [Bacillus megaterium QM B1551] Length = 248 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 106/217 (48%), Gaps = 7/217 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 ++ +K IG F N +LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 20 FAEFQKEIGIQFTNEALLFQAFTHSSYVNEHRRRPYEDNERLEFLGDAVLELTVSQFLFK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + A E+D + + ++ ADV E+ Sbjct: 80 KYPTMSEGELTKLRAAVVCEPSLVTFANEMDFGKLVLLGKGEEMTGGRSRPALLADVFEA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G++ T + K + + G F D K++LQE EYKV Sbjct: 140 FIGALYLDQGLDTVVTILKKVVFPK-INEGAFSHVMDFKSQLQEVIQRDGVGQLEYKVLQ 198 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GP H+ F V ++G G+ SK+ AEQ AA Sbjct: 199 EKGPAHNREFLSRVSLNGEELGVGVGRSKKEAEQKAA 235 >gi|120602683|ref|YP_967083.1| ribonuclease III [Desulfovibrio vulgaris DP4] gi|120562912|gb|ABM28656.1| RNAse III [Desulfovibrio vulgaris DP4] gi|311234148|gb|ADP87002.1| ribonuclease III [Desulfovibrio vulgaris RCH1] Length = 228 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 111/215 (51%), Gaps = 7/215 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 L+K IG+ F + LL A+THSS ++ E ERLEFLGD +L L +S LF F S Sbjct: 7 LQKTIGHRFGDMELLLTAMTHSSWANEQAVPVEHNERLEFLGDAVLELCVSEELFRRFPS 66 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EG+L+ + LVS + VAREL L +R+ S+ +D +E+++ A Sbjct: 67 AREGDLTRMRSRLVSKPSLEGVARELRLDMSLRLGKGEESQGGRERGSLLSDALEAMLGA 126 Query: 126 LYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ++LD G A V + AL + +D K++LQE F P Y + SG Sbjct: 127 VFLDAGYIAAKGVVMRILGPHFPEALVPVR-TKDYKSQLQELTQKLFRDRPVYTLLGSSG 185 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 P+HD +F V V + + S + AEQ+AAA Sbjct: 186 PEHDKQFDVRVVLPDGTVFEATGPSMKRAEQMAAA 220 >gi|297617466|ref|YP_003702625.1| ribonuclease III [Syntrophothermus lipocalidus DSM 12680] gi|297145303|gb|ADI02060.1| ribonuclease III [Syntrophothermus lipocalidus DSM 12680] Length = 232 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LL KALTH S S + E+ +RLEFLGD +L ++++ L+ +F EG+L+ + Sbjct: 23 GLLTKALTHPSYSQENEAVENNQRLEFLGDAVLNMVVAEYLYKNFPERPEGDLTRIRAKV 82 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 V + +VA L + ++ + SI AD VE+++ A+YLD G+E A F Sbjct: 83 VCEKALVKVANTLKVGEYLYLGRGEELSGGRKRNSILADTVEAVVGAVYLDQGLEYARDF 142 Query: 139 VDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + +Y Q + G F D K++LQE ++ Y + SGP HD F V Sbjct: 143 ILRYLAQDIHEVAEGNFY-DYKSQLQELVQSRGKDNVTYAILEESGPAHDKTFIAGVFYR 201 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLK 221 AQG+ SK+ AEQ AA +VL+ Sbjct: 202 HKLLAQGVGKSKKEAEQKAAEKVLQ 226 >gi|166155383|ref|YP_001653638.1| ribonuclease III [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|238687467|sp|B0BBS8|RNC_CHLTB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|165931371|emb|CAP06943.1| ribonuclease III [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 231 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 108/215 (50%), Gaps = 3/215 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDS 65 +E ++ + F++ LL ALTHSS + + +E ERLEFLGD +LGL+++ LF F + Sbjct: 10 IESKLNFTFSHPRLLITALTHSSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHLFLLFPA 69 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG LS +LV+AE C + ++L L + + + S A++ E+++ A Sbjct: 70 LNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLFEAILGA 129 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +YLDGG+ A + + + K LQ++ V P YK D Sbjct: 130 VYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALPWKSEDG 189 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P + V V ++G +G SK+ AE++AA + L Sbjct: 190 SPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224 >gi|146329595|ref|YP_001209601.1| ribonuclease III [Dichelobacter nodosus VCS1703A] gi|146233065|gb|ABQ14043.1| ribonuclease III [Dichelobacter nodosus VCS1703A] Length = 233 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 114/219 (52%), Gaps = 7/219 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + + LE +GY+F N LL++ALTH S S + E R E+LGD +L +IS L+ + Sbjct: 7 INWQLLEHALGYSFQNPELLQRALTHRSFSADHNE---RFEYLGDALLETVISVALYRRY 63 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG+L+ ++V + + + +A++LDL ++R+ S K SI AD VE++I Sbjct: 64 PESPEGDLTRLRAAIVKSSSLAVIAKQLDLGRYLRLGSGELKSGGKRRESILADAVEAII 123 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD + AL + +D KT LQE+ ++ P Y++ Sbjct: 124 AAVYLDSDFYRCEQITLALFAPAIAALPDVEALKDPKTRLQEYLQSRDLPLPVYELVEEK 183 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP+H FT+ + S++ AEQ AAAE+L Sbjct: 184 GPEHAKIFTISAKSERFC-TTATASSRKKAEQ-AAAELL 220 >gi|225860919|ref|YP_002742428.1| ribonuclease III [Streptococcus pneumoniae Taiwan19F-14] gi|298229966|ref|ZP_06963647.1| ribonuclease III [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254343|ref|ZP_06977929.1| ribonuclease III [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502755|ref|YP_003724695.1| ribonuclease III [Streptococcus pneumoniae TCH8431/19A] gi|254807906|sp|C1CR56|RNC_STRZT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|225726586|gb|ACO22437.1| ribonuclease III [Streptococcus pneumoniae Taiwan19F-14] gi|298238350|gb|ADI69481.1| ribonuclease III [Streptococcus pneumoniae TCH8431/19A] gi|327389483|gb|EGE87828.1| ribonuclease III [Streptococcus pneumoniae GA04375] Length = 232 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 109/222 (49%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+ F +++LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLKNHFAIEFTDKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD + F+ + + +++G+F D KT LQE V Y+V Sbjct: 126 LGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|289209108|ref|YP_003461174.1| ribonuclease III [Thioalkalivibrio sp. K90mix] gi|288944739|gb|ADC72438.1| ribonuclease III [Thioalkalivibrio sp. K90mix] Length = 236 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/181 (37%), Positives = 93/181 (51%), Gaps = 9/181 (4%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALTH S + ERLEFLGD +LGL+I+ L+ A EG+L+ +LV+ E+ Sbjct: 31 QALTHRSAGG---RNNERLEFLGDAVLGLVIADALYEQLPDAPEGDLTRLRAALVNRESL 87 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + +ARE L + + RK SI AD VE+LI Y + G++ A F + Sbjct: 88 AALARESGLEGTLNLGQGERKSGGQRRDSILADAVEALIGVTYREAGMQAARDFTLALYA 147 Query: 145 QR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 +R L S + +D KT LQE + P Y+V GPDH RFTV V + P Q Sbjct: 148 ERLGNLPSAESLKDPKTRLQEQLQGRNAELPVYEVLEVVGPDHQRRFTVSVHL----PTQ 203 Query: 203 G 203 G Sbjct: 204 G 204 >gi|172057915|ref|YP_001814375.1| ribonuclease III [Exiguobacterium sibiricum 255-15] gi|171990436|gb|ACB61358.1| Ribonuclease III [Exiguobacterium sibiricum 255-15] Length = 256 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 114/222 (51%), Gaps = 8/222 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFN 61 ++ L++R+ FAN LL++A THSS + +ES ERLEFLGD +L L +S LF Sbjct: 30 KFGQLQERLDIHFANVELLKQAFTHSSFVNEQRESDGDNERLEFLGDAVLELTVSRYLFQ 89 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H+ EGEL+ ++V + Q A + + I + ++ ADV E+ Sbjct: 90 HYPERSEGELTKLRAAIVCEPSLVQFANHYEFSEMILLGKGEELTGGRNRPALLADVFEA 149 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTP-EYKVT 178 I ALYLD GIE A F+ + + + SG F + D K++LQE A + G+ EY++ Sbjct: 150 FIGALYLDQGIEAAERFLAEAVFPK-VASGFFEEQTDFKSQLQE-AIQRVGLGQIEYEII 207 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP H F V I+ G SK+ AEQ AA + L Sbjct: 208 EERGPAHSREFISRVHIADKLEGIGTGRSKKEAEQQAAKQAL 249 >gi|295706311|ref|YP_003599386.1| ribonuclease III [Bacillus megaterium DSM 319] gi|294803970|gb|ADF41036.1| ribonuclease III [Bacillus megaterium DSM 319] Length = 265 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 106/217 (48%), Gaps = 7/217 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 ++ +K IG F N +LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 37 FAEFQKEIGIQFTNEALLFQAFTHSSYVNEHRRRPYEDNERLEFLGDAVLELTVSQFLFK 96 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + A E+D + + ++ ADV E+ Sbjct: 97 KYPTMSEGELTKLRAAVVCEPSLVTFANEMDFGKLVLLGKGEEMTGGRSRPALLADVFEA 156 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G++ T + K + + G F D K++LQE EYKV Sbjct: 157 FIGALYLDQGLDTVVTILKKVVFPK-INEGAFSHVMDFKSQLQEVIQRDGVGQLEYKVLQ 215 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GP H+ F V ++G G+ SK+ AEQ AA Sbjct: 216 EKGPAHNREFLSRVSLNGEELGVGVGRSKKEAEQKAA 252 >gi|119897933|ref|YP_933146.1| ribonuclease III [Azoarcus sp. BH72] gi|119670346|emb|CAL94259.1| putative Ribonuclease III [Azoarcus sp. BH72] Length = 223 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 103/211 (48%), Gaps = 6/211 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++ +G+ FA LL++ALTH S Q + ERLEFLGD IL + S L+ F +E Sbjct: 6 LQRALGHQFAQPELLQQALTHRSFG---QPNNERLEFLGDSILNCVTSIALYERFGGLRE 62 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS LV + ++A +L L +R+ K SI AD +E++ AA++L Sbjct: 63 GELSRLRAGLVCQDALHRIAVQLKLGDCLRLGEGELKSGGFRRPSILADALEAIFAAVFL 122 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D A +D+ + ++ G +D KT LQEW + P Y + +G H Sbjct: 123 DSDFAGAKAVIDRLYAPLLAEVEPGAPAKDPKTALQEWLQGRKSPLPTYVMVQVTGEAHA 182 Query: 187 PRFTVVVEISG-LAPAQGMDCSKRAAEQVAA 216 F V E+ G S+R AEQ AA Sbjct: 183 QEFEVACEVEKHKVRTVGRGTSRRIAEQRAA 213 >gi|284054412|ref|ZP_06384622.1| ribonuclease III [Arthrospira platensis str. Paraca] Length = 394 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 21/228 (9%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYER----LEFLGDRILGLLISTLLFNH 62 S L K+I F N LL ALTHSS + + + +R LEFLGD +L + L++ Sbjct: 166 SKLLKKI--PFQNVDLLNHALTHSSYLYEHPKEVKRDNELLEFLGDSVLNFISGEYLYHK 223 Query: 63 FDS-AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + S EG+L+ ++LV + ++ A +L L +IR+ + S+ ++ E+ Sbjct: 224 YKSVGNEGDLTKLRSALVENKQLAKFAEKLALQQYIRLGKG-----VALNPSLLSNTFEA 278 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--------SGKFRRDAKTELQEWAHAKFG-VT 172 +I A +LD G++ F+ + + SGK D+K LQEW G +T Sbjct: 279 MIGACFLDSGMKKVQEFLQPLFDSVIAEITSLSQGNSGKVAADSKNRLQEWVQKNIGPIT 338 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 PEY+ G DH +FTV V + G QG SK+ A + AA + L Sbjct: 339 PEYETIKEEGADHQKQFTVQVMVEGKVYGQGKGLSKKEASKKAAEKAL 386 >gi|21674928|ref|NP_662993.1| ribonuclease III [Chlorobium tepidum TLS] gi|28201878|sp|Q8KAN7|RNC_CHLTE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|21648156|gb|AAM73335.1| ribonuclease III [Chlorobium tepidum TLS] Length = 272 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/212 (33%), Positives = 104/212 (49%), Gaps = 8/212 (3%) Query: 19 NRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 NR + ALTH S+ H + ES +RLEFLGD +L LLIS LF F + EG LS Sbjct: 44 NRLIYRTALTHRSVLHDHHSEEHKPESNQRLEFLGDAVLDLLISEHLFKQFPGSDEGHLS 103 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +V+ ++ + A EL L + + K S AD +E+L+ A+YLD G+ Sbjct: 104 SNRAKIVNRKSLAAFALELQLGEHLIIGESADKQKIRTSESALADALEALVGAIYLDQGL 163 Query: 133 EVAGTFVDKY--WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 A F+ + K K + + K+ L E+ ++ P Y V G +H+ F Sbjct: 164 AGAERFITNHVIAKVDLHKLVEAEYNYKSRLIEYTQSRQLPPPLYTVITEEGAEHEKTFV 223 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V V +G +G K+ AEQ+AA E +KR Sbjct: 224 VEVSCNGQPLGRGTAPRKKDAEQLAAKEAMKR 255 >gi|291570878|dbj|BAI93150.1| ribonuclease III [Arthrospira platensis NIES-39] Length = 395 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 21/228 (9%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYER----LEFLGDRILGLLISTLLFNH 62 S L K+I F N LL ALTHSS + + + +R LEFLGD +L + L++ Sbjct: 167 SKLLKKI--PFQNVDLLNHALTHSSYLYEHPKEVKRDNELLEFLGDSVLNFISGEYLYHK 224 Query: 63 FDS-AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + S EG+L+ ++LV + ++ A +L L +IR+ + S+ ++ E+ Sbjct: 225 YKSVGNEGDLTKLRSALVENKQLAKFAEKLALQQYIRLGKG-----VALNPSLLSNTFEA 279 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--------SGKFRRDAKTELQEWAHAKFG-VT 172 +I A +LD G++ F+ + + SGK D+K LQEW G +T Sbjct: 280 MIGACFLDSGMKKVQEFLQPLFDSVIAEITSLSQGNSGKVAADSKNRLQEWVQKNIGPIT 339 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 PEY+ G DH +FTV V + G QG SK+ A + AA + L Sbjct: 340 PEYETIKEEGADHQKQFTVQVMVEGKVYGQGKGLSKKEASKKAAEKAL 387 >gi|19703497|ref|NP_603059.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|22654053|sp|Q8RGX3|RNC_FUSNN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|19713585|gb|AAL94358.1| Ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 234 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 122/226 (53%), Gaps = 13/226 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ + Sbjct: 7 LEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQTNERLELLGDAVLDLIVAEYLYKSYK 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS---FMTSIQADVVES 121 +A EG ++ +VS ++++R++ + F+ +S R +V S SI AD E+ Sbjct: 67 NASEGPIAKLKAMIVSEPILAKISRQIGVGKFLMLS---RGEVMSGGRNRESILADSFEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++ A+Y+D ++ A F + KQ ++ + D K+ LQE+ +F P Y++ Sbjct: 124 ILGAVYIDSNLDEARVFALSHIKQYIDHIEENEDILDFKSILQEYVQKEFKTVPTYELVA 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDH F + V I G + + +K+ AEQ++A + + G+ Sbjct: 184 ERGPDHMKEFEIQV-IVGNYKEKAVARNKKKAEQLSAKALCIKLGV 228 >gi|281413069|ref|YP_003347148.1| ribonuclease III [Thermotoga naphthophila RKU-10] gi|281374172|gb|ADA67734.1| ribonuclease III [Thermotoga naphthophila RKU-10] Length = 240 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 113/218 (51%), Gaps = 11/218 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTLLFN 61 +K+ G F N LL +AL HSS ++ ES E+LEFLGD +L L + +L+ Sbjct: 12 FQKKTGINFKNEELLFRALCHSSYANEQNQAGRKNVESNEKLEFLGDAVLELFVCEILYK 71 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + A+ G+L+ ++ S E + V+R+++L F+ + K SI AD E+ Sbjct: 72 KYPEAEVGDLARAKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEA 131 Query: 122 LIAALYLDGGIEVAGTFVDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 L+AA+YLD G E ++ ++ ++ ++ G+ D KT LQE ++ V PEY + Sbjct: 132 LLAAIYLDQGYEKIKELFEQEFEFYIEKIMR-GEMLFDYKTALQEIVQSEHKVPPEYVLV 190 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 D D F V V + G + A G +K+ AE+ AA Sbjct: 191 RTEKNDGDRIFVVEVRVDGKSIAMGRGRTKKEAEKEAA 228 >gi|302389624|ref|YP_003825445.1| RNAse III [Thermosediminibacter oceani DSM 16646] gi|302200252|gb|ADL07822.1| RNAse III [Thermosediminibacter oceani DSM 16646] Length = 241 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 114/223 (51%), Gaps = 14/223 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFD 64 L++ +G F + ++L +A H S ++ S+QE +RLEFLGD +L L+IS +++ + Sbjct: 14 LQQILGVDFDDLNILNQAFIHPSYAYEKGLSHQEHNQRLEFLGDAVLELVISEWIYDKYP 73 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGEL+ LV E+ + ++REL L F+ + SI AD E+LI Sbjct: 74 NYTEGELTKLRALLVCEESLAYLSRELTLGDFLIMGKGEEITGGREKASILADTFEALIG 133 Query: 125 ALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPE---YKVT 178 A+YLD G FV + +K +RA K GK D KT LQE ++P+ Y V Sbjct: 134 AMYLDKGFGAITGFVREKFKPVMERAEK-GKLFPDYKTALQEMLQR---ISPDRITYNVI 189 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDH+ F V V G SK+ AEQ AA ++ Sbjct: 190 KEEGPDHNKTFFVEVVWKNKILGSGCGKSKKEAEQNAAKAAIR 232 >gi|91784707|ref|YP_559913.1| ribonuclease III [Burkholderia xenovorans LB400] gi|91688661|gb|ABE31861.1| RNAse III [Burkholderia xenovorans LB400] Length = 428 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 103/198 (52%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSPLESRLRYEFRNAELLRQALTHRSHSSTHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD +E++ Sbjct: 58 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAV 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A++LDGG E A T + + + + +DAKT LQE+ P Y V Sbjct: 117 LGAVFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|220934266|ref|YP_002513165.1| Ribonuclease III [Thioalkalivibrio sp. HL-EbGR7] gi|219995576|gb|ACL72178.1| Ribonuclease III [Thioalkalivibrio sp. HL-EbGR7] Length = 228 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 71/202 (35%), Positives = 104/202 (51%), Gaps = 6/202 (2%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL +ALTH S + ERLE+LGD +LG++++ LF A EG+LS +LV+ Sbjct: 19 LLTEALTHRSAG---SPNNERLEYLGDAVLGMVMAEHLFKAHPEASEGDLSRLRATLVNK 75 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 ++ + + + L I + K + SI AD VE++I A+YLD G + A FV Sbjct: 76 DSLAVIGKAQGLGGHINLGQGELKSGGARRNSILADAVEAVIGAVYLDSGFDAARRFVLA 135 Query: 142 YWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 + R +L + +D KT LQEW + P Y+VT +G H+ RF + + G Sbjct: 136 LYADRLESLPALDALKDPKTRLQEWLQGRSRELPVYEVTSVTGKAHEQRFRALCRV-GDQ 194 Query: 200 PAQGMDCSKRAAEQVAAAEVLK 221 G S+R AEQ AA LK Sbjct: 195 EYPGEGTSRRRAEQAAAECALK 216 >gi|90961602|ref|YP_535518.1| ribonuclease III [Lactobacillus salivarius UCC118] gi|301299302|ref|ZP_07205588.1| ribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a] gi|122449142|sp|Q1WUA0|RNC_LACS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90820796|gb|ABD99435.1| Ribonuclease III [Lactobacillus salivarius UCC118] gi|300214418|gb|ADJ78834.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus salivarius CECT 5713] gi|300853146|gb|EFK80744.1| ribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a] Length = 232 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 9/222 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES------YERLEFLGDRILGLLISTLLFNH 62 L++ F + LL+ A TH+S + E YER+EFLGD ++ L +S ++ H Sbjct: 9 LKRDFNITFKDVDLLDAAFTHASYVNETPERKKKLKYYERIEFLGDAVMQLCVSEYIYEH 68 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG++S ++V A++ S+ A E +IR+ K S+ D+ ES Sbjct: 69 YPEMPEGKMSRLRAAMVRADSFSKFAIECHFNEYIRLGKGEEKGNARQRPSLLCDIFESF 128 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G + F+ K + L+ G F D KTELQE +Y Sbjct: 129 IGALYLDQGKDEVVRFISKVIFPK-LELGWFDHMMDNKTELQEVLQQNGECKIKYNEVNV 187 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GPD++ +T+ V ++ +G +K+AAEQ+AA + LK+ Sbjct: 188 TGPDNERVYTMNVVVNNEVMGEGTGRTKKAAEQMAAYQALKK 229 >gi|15605018|ref|NP_219802.1| ribonuclease III [Chlamydia trachomatis D/UW-3/CX] gi|76789019|ref|YP_328105.1| ribonuclease III [Chlamydia trachomatis A/HAR-13] gi|237802720|ref|YP_002887914.1| ribonuclease III [Chlamydia trachomatis B/Jali20/OT] gi|237804642|ref|YP_002888796.1| ribonuclease III [Chlamydia trachomatis B/TZ1A828/OT] gi|255311099|ref|ZP_05353669.1| ribonuclease III [Chlamydia trachomatis 6276] gi|255317400|ref|ZP_05358646.1| ribonuclease III [Chlamydia trachomatis 6276s] gi|7531193|sp|O84299|RNC_CHLTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101618|sp|Q3KM65|RNC_CHLTA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|3328712|gb|AAC67890.1| Ribonuclease III [Chlamydia trachomatis D/UW-3/CX] gi|76167549|gb|AAX50557.1| ribonuclease III [Chlamydia trachomatis A/HAR-13] gi|231272942|emb|CAX09853.1| ribonuclease III [Chlamydia trachomatis B/TZ1A828/OT] gi|231273954|emb|CAX10746.1| ribonuclease III [Chlamydia trachomatis B/Jali20/OT] gi|296435814|gb|ADH17988.1| ribonuclease III [Chlamydia trachomatis G/9768] gi|296436739|gb|ADH18909.1| ribonuclease III [Chlamydia trachomatis G/11222] gi|296437674|gb|ADH19835.1| ribonuclease III [Chlamydia trachomatis G/11074] gi|297140173|gb|ADH96931.1| ribonuclease III [Chlamydia trachomatis G/9301] gi|297748426|gb|ADI50972.1| Ribonuclease III [Chlamydia trachomatis D-EC] gi|297749306|gb|ADI51984.1| Ribonuclease III [Chlamydia trachomatis D-LC] Length = 231 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 3/215 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDS 65 +E ++ + F++ LL ALTH S + + +E ERLEFLGD +LGL+++ LF F + Sbjct: 10 IESKLNFTFSHPRLLITALTHPSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHLFLLFPA 69 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG LS +LV+AE C + ++L L + + + S A+++E+++ A Sbjct: 70 LNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLLEAILGA 129 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +YLDGG+ A + + + K LQ++ V P YK D Sbjct: 130 VYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALPWKSEDG 189 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P + V V ++G +G SK+ AE++AA + L Sbjct: 190 SPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224 >gi|290968970|ref|ZP_06560505.1| ribonuclease III [Megasphaera genomosp. type_1 str. 28L] gi|290780926|gb|EFD93519.1| ribonuclease III [Megasphaera genomosp. type_1 str. 28L] Length = 236 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 74/217 (34%), Positives = 109/217 (50%), Gaps = 16/217 (7%) Query: 17 FANRSLLEKALTHSSIS--HSYQESY--ERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N LL++ALTHSS + H + Y ERLEFLGD IL L++ LF + +EGELS Sbjct: 21 FQNLLLLDQALTHSSYANEHKIRHGYFNERLEFLGDAILDLVVGEYLFLQYPQMQEGELS 80 Query: 73 VRFNSLVSAETCSQVARELDLASFI-----RVSSDLRKDVCSFMTSIQADVVESLIAALY 127 S+VS + V + ++ +SS R+ I AD E+++ A+Y Sbjct: 81 KARASIVSEAPLAAVCSAFHMGKYLLLGHGEISSGGRE-----RPGILADAFEAVVGAVY 135 Query: 128 LDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +D E A F+ ++ + +++G + +D KT QE+ Y + SGPDH Sbjct: 136 MDASYEEARKFILRHLRDYLALVENGHYDQDYKTLFQEYIQRDGEHHITYSLCKESGPDH 195 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 D FT+ V G +G SK+ AEQ AA + L R Sbjct: 196 DKTFTMQVAADGKVLGEGCGKSKKMAEQHAARQALLR 232 >gi|27066029|pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From Thermotoga Maritima At 2.0 A Resolution gi|27066030|pdb|1O0W|B Chain B, Crystal Structure Of Ribonuclease Iii (Tm1102) From Thermotoga Maritima At 2.0 A Resolution Length = 252 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 11/218 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTLLFN 61 +K G F N LL +AL HSS ++ ES E+LEFLGD +L L + +L+ Sbjct: 24 FQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYK 83 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + A+ G+L+ ++ S E + V+R+++L F+ + K SI AD E+ Sbjct: 84 KYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEA 143 Query: 122 LIAALYLDGGIEVAGTFVDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 L+AA+YLD G E ++ ++ ++ +K G+ D KT LQE ++ V PEY + Sbjct: 144 LLAAIYLDQGYEKIKELFEQEFEFYIEKIMK-GEMLFDYKTALQEIVQSEHKVPPEYILV 202 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 D D F V V ++G A G +K+ AE+ AA Sbjct: 203 RTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAA 240 >gi|269218651|ref|ZP_06162505.1| ribonuclease III [Actinomyces sp. oral taxon 848 str. F0332] gi|269211762|gb|EEZ78102.1| ribonuclease III [Actinomyces sp. oral taxon 848 str. F0332] Length = 228 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 74/217 (34%), Positives = 112/217 (51%), Gaps = 6/217 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY-ERLEFLGDRILGLLISTLLFNH 62 + Y L +R G R LL ALTH S + + E + ERLEFLGD +LG + + +F Sbjct: 1 MSYRELVERWGVDI-RRPLLRLALTHRSFAFEHDEPHNERLEFLGDSVLGFITADKVFRE 59 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F ++EG++S VS + + +AREL+L FIR+ SI +D VE+L Sbjct: 60 FPDSREGDMSRMKTFAVSEKALASIARELELGRFIRLGRGEDLSGGRDKDSILSDTVEAL 119 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGV-TPEYKVTF 179 IAA YL G++VA V++ + + D +T +E AH + V + ++++T Sbjct: 120 IAATYLQHGLDVARKIVERLVAAKIEDASLLGPNLDWQTSFEEVAHERGMVGSLQFELT- 178 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH +T V + G +G SK+ A Q AA Sbjct: 179 SEGPDHQRVYTAVASMGGRVWGEGTGSSKKTARQAAA 215 >gi|15643859|ref|NP_228908.1| ribonuclease III [Thermotoga maritima MSB8] gi|7531194|sp|Q9X0I6|RNC_THEMA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|4981647|gb|AAD36178.1|AE001769_8 ribonuclease III [Thermotoga maritima MSB8] Length = 240 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 11/218 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTLLFN 61 +K G F N LL +AL HSS ++ ES E+LEFLGD +L L + +L+ Sbjct: 12 FQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYK 71 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + A+ G+L+ ++ S E + V+R+++L F+ + K SI AD E+ Sbjct: 72 KYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEA 131 Query: 122 LIAALYLDGGIEVAGTFVDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 L+AA+YLD G E ++ ++ ++ +K G+ D KT LQE ++ V PEY + Sbjct: 132 LLAAIYLDQGYEKIKELFEQEFEFYIEKIMK-GEMLFDYKTALQEIVQSEHKVPPEYILV 190 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 D D F V V ++G A G +K+ AE+ AA Sbjct: 191 RTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAA 228 >gi|148993857|ref|ZP_01823259.1| ribonuclease III [Streptococcus pneumoniae SP9-BS68] gi|149007089|ref|ZP_01830758.1| ribonuclease III [Streptococcus pneumoniae SP18-BS74] gi|149012300|ref|ZP_01833369.1| ribonuclease III [Streptococcus pneumoniae SP19-BS75] gi|149019239|ref|ZP_01834601.1| ribonuclease III [Streptococcus pneumoniae SP23-BS72] gi|168486568|ref|ZP_02711076.1| ribonuclease III [Streptococcus pneumoniae CDC1087-00] gi|168489075|ref|ZP_02713274.1| ribonuclease III [Streptococcus pneumoniae SP195] gi|182684025|ref|YP_001835772.1| ribonuclease III [Streptococcus pneumoniae CGSP14] gi|225854713|ref|YP_002736225.1| ribonuclease III [Streptococcus pneumoniae JJA] gi|225859042|ref|YP_002740552.1| ribonuclease III [Streptococcus pneumoniae 70585] gi|303254257|ref|ZP_07340366.1| ribonuclease III [Streptococcus pneumoniae BS455] gi|303258883|ref|ZP_07344862.1| ribonuclease III [Streptococcus pneumoniae SP-BS293] gi|303261566|ref|ZP_07347513.1| ribonuclease III [Streptococcus pneumoniae SP14-BS292] gi|303264237|ref|ZP_07350157.1| ribonuclease III [Streptococcus pneumoniae BS397] gi|303266132|ref|ZP_07352025.1| ribonuclease III [Streptococcus pneumoniae BS457] gi|303268141|ref|ZP_07353941.1| ribonuclease III [Streptococcus pneumoniae BS458] gi|307127162|ref|YP_003879193.1| ribonuclease III [Streptococcus pneumoniae 670-6B] gi|238691158|sp|B2IPN5|RNC_STRPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807901|sp|C1C7M6|RNC_STRP7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807904|sp|C1CEK4|RNC_STRZJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|147761393|gb|EDK68359.1| ribonuclease III [Streptococcus pneumoniae SP18-BS74] gi|147763626|gb|EDK70561.1| ribonuclease III [Streptococcus pneumoniae SP19-BS75] gi|147927682|gb|EDK78707.1| ribonuclease III [Streptococcus pneumoniae SP9-BS68] gi|147931109|gb|EDK82088.1| ribonuclease III [Streptococcus pneumoniae SP23-BS72] gi|182629359|gb|ACB90307.1| ribonuclease III [Streptococcus pneumoniae CGSP14] gi|183570477|gb|EDT91005.1| ribonuclease III [Streptococcus pneumoniae CDC1087-00] gi|183572564|gb|EDT93092.1| ribonuclease III [Streptococcus pneumoniae SP195] gi|225722013|gb|ACO17867.1| ribonuclease III [Streptococcus pneumoniae 70585] gi|225722854|gb|ACO18707.1| ribonuclease III [Streptococcus pneumoniae JJA] gi|301801897|emb|CBW34621.1| ribonuclease III [Streptococcus pneumoniae INV200] gi|302598751|gb|EFL65788.1| ribonuclease III [Streptococcus pneumoniae BS455] gi|302637146|gb|EFL67634.1| ribonuclease III [Streptococcus pneumoniae SP14-BS292] gi|302639826|gb|EFL70282.1| ribonuclease III [Streptococcus pneumoniae SP-BS293] gi|302642358|gb|EFL72705.1| ribonuclease III [Streptococcus pneumoniae BS458] gi|302644302|gb|EFL74556.1| ribonuclease III [Streptococcus pneumoniae BS457] gi|302646049|gb|EFL76276.1| ribonuclease III [Streptococcus pneumoniae BS397] gi|306484224|gb|ADM91093.1| ribonuclease III [Streptococcus pneumoniae 670-6B] gi|332073586|gb|EGI84065.1| ribonuclease III [Streptococcus pneumoniae GA17570] gi|332074581|gb|EGI85055.1| ribonuclease III [Streptococcus pneumoniae GA17545] Length = 232 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 108/222 (48%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+ F ++ LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLKNHFAIEFTDKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD + F+ + + +++G+F D KT LQE V Y+V Sbjct: 126 LGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|296158234|ref|ZP_06841066.1| ribonuclease III [Burkholderia sp. Ch1-1] gi|295891570|gb|EFG71356.1| ribonuclease III [Burkholderia sp. Ch1-1] Length = 416 Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 103/198 (52%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSPLESRLRYEFRNAELLRQALTHRSHSSTHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD +E++ Sbjct: 58 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAV 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A++LDGG E A T + + + + +DAKT LQE+ P Y V Sbjct: 117 LGAVFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|261377909|ref|ZP_05982482.1| ribonuclease III [Neisseria cinerea ATCC 14685] gi|269145767|gb|EEZ72185.1| ribonuclease III [Neisseria cinerea ATCC 14685] Length = 239 Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 8/220 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GY F + SLL +ALTH S + E R EF+GD IL ++ +LF+ F Sbjct: 11 HTAIQKKLGYEFRDISLLRQALTHRSCHAKHNE---RFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+D+ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEIAAEMDVGEGLYLGTGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + +R +K F+ +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFSER-VKRADFQNQEKDGKTALQEALQARRFALPKYRIEEQIG 186 Query: 183 PDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 +D F + ++ L + S++AAEQ AA E L+ Sbjct: 187 HANDSMFVISCDLGELGFVCRAKGTSRKAAEQSAAKEALQ 226 >gi|322378529|ref|ZP_08052977.1| ribonuclease III [Helicobacter suis HS1] gi|321149043|gb|EFX43495.1| ribonuclease III [Helicobacter suis HS1] Length = 216 Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 4/206 (1%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +GY F + LL++ALTH S ++ ERLEFLGD +L L+++ +LF F +EG+LS Sbjct: 1 MGYVFKDPLLLQQALTHRSTKA--HKNNERLEFLGDAVLDLVVAEILFTRFTDLQEGDLS 58 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 SLV+ + ++A L+L I +S + SI + E+L+ A+YL+ G+ Sbjct: 59 KMRASLVNEKAFFKLALSLNLQDHILISQAEANNNGHTKPSILSSAFEALMGAIYLESGL 118 Query: 133 EVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E+ + L D K+ LQE A+F P Y + SGPDH +F Sbjct: 119 EIIKNLIQDLLDMAYPNLSPKTLFMDYKSALQELTQARFKAIPIYALKSESGPDHAKQFE 178 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAA 216 + + I SK+ AEQ+ A Sbjct: 179 MQIFILNKLYGTCKAGSKKQAEQLCA 204 >gi|320352215|ref|YP_004193554.1| RNAse III [Desulfobulbus propionicus DSM 2032] gi|320120717|gb|ADW16263.1| RNAse III [Desulfobulbus propionicus DSM 2032] Length = 243 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/216 (32%), Positives = 109/216 (50%), Gaps = 25/216 (11%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERL---------EFLGDRILGLLISTLL 59 L++RIGY F + LL+ +L HSS + +ERL EFLGD +L L + +L Sbjct: 19 LQERIGYRFRDLRLLQLSLIHSSFA------FERLDDGRHNETQEFLGDAVLDLTVGYIL 72 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F +EG+L+ ++LV+ + + ARE+DL ++ + +SI + Sbjct: 73 FVRFPEMREGKLTRIRSALVNEQGLADRAREIDLGKYLLLGKGENASNGRDKSSILSCAY 132 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWK------QRALKSGKFRRDAKTELQEWAHAKFGVTP 173 E+L+ AL+LDGG + A FV ++++ Q L S DAK+ LQE +F P Sbjct: 133 EALVGALFLDGGYDQALAFVRRFFEPHIDQHQEQLVSA----DAKSSLQELLQERFNEGP 188 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 EY +T GP H F++ V G G SK+ Sbjct: 189 EYMLTGEEGPAHARLFSITVTFQGEELGSGRASSKK 224 >gi|227517298|ref|ZP_03947347.1| ribonuclease III [Enterococcus faecalis TX0104] gi|227554519|ref|ZP_03984566.1| ribonuclease III [Enterococcus faecalis HH22] gi|229547475|ref|ZP_04436200.1| ribonuclease III [Enterococcus faecalis TX1322] gi|229548050|ref|ZP_04436775.1| ribonuclease III [Enterococcus faecalis ATCC 29200] gi|256854772|ref|ZP_05560136.1| ribonuclease III [Enterococcus faecalis T8] gi|293385103|ref|ZP_06630929.1| ribonuclease III [Enterococcus faecalis R712] gi|293389076|ref|ZP_06633548.1| ribonuclease III [Enterococcus faecalis S613] gi|307270584|ref|ZP_07551882.1| ribonuclease III [Enterococcus faecalis TX4248] gi|307273593|ref|ZP_07554821.1| ribonuclease III [Enterococcus faecalis TX0855] gi|307284870|ref|ZP_07565026.1| ribonuclease III [Enterococcus faecalis TX0860] gi|307288870|ref|ZP_07568843.1| ribonuclease III [Enterococcus faecalis TX0109] gi|307292116|ref|ZP_07571982.1| ribonuclease III [Enterococcus faecalis TX0411] gi|312902145|ref|ZP_07761405.1| ribonuclease III [Enterococcus faecalis TX0470] gi|312905399|ref|ZP_07764513.1| ribonuclease III [Enterococcus faecalis TX0635] gi|312906714|ref|ZP_07765714.1| ribonuclease III [Enterococcus faecalis DAPTO 512] gi|312910825|ref|ZP_07769661.1| ribonuclease III [Enterococcus faecalis DAPTO 516] gi|312953196|ref|ZP_07772042.1| ribonuclease III [Enterococcus faecalis TX0102] gi|227075305|gb|EEI13268.1| ribonuclease III [Enterococcus faecalis TX0104] gi|227176317|gb|EEI57289.1| ribonuclease III [Enterococcus faecalis HH22] gi|229306839|gb|EEN72835.1| ribonuclease III [Enterococcus faecalis ATCC 29200] gi|229307399|gb|EEN73386.1| ribonuclease III [Enterococcus faecalis TX1322] gi|256710332|gb|EEU25376.1| ribonuclease III [Enterococcus faecalis T8] gi|291077580|gb|EFE14944.1| ribonuclease III [Enterococcus faecalis R712] gi|291081544|gb|EFE18507.1| ribonuclease III [Enterococcus faecalis S613] gi|306496769|gb|EFM66320.1| ribonuclease III [Enterococcus faecalis TX0411] gi|306500142|gb|EFM69486.1| ribonuclease III [Enterococcus faecalis TX0109] gi|306503129|gb|EFM72386.1| ribonuclease III [Enterococcus faecalis TX0860] gi|306509606|gb|EFM78648.1| ribonuclease III [Enterococcus faecalis TX0855] gi|306513165|gb|EFM81799.1| ribonuclease III [Enterococcus faecalis TX4248] gi|310627362|gb|EFQ10645.1| ribonuclease III [Enterococcus faecalis DAPTO 512] gi|310628813|gb|EFQ12096.1| ribonuclease III [Enterococcus faecalis TX0102] gi|310631128|gb|EFQ14411.1| ribonuclease III [Enterococcus faecalis TX0635] gi|311288848|gb|EFQ67404.1| ribonuclease III [Enterococcus faecalis DAPTO 516] gi|311290809|gb|EFQ69365.1| ribonuclease III [Enterococcus faecalis TX0470] gi|315026454|gb|EFT38386.1| ribonuclease III [Enterococcus faecalis TX2137] gi|315028377|gb|EFT40309.1| ribonuclease III [Enterococcus faecalis TX4000] gi|315031785|gb|EFT43717.1| ribonuclease III [Enterococcus faecalis TX0017] gi|315034802|gb|EFT46734.1| ribonuclease III [Enterococcus faecalis TX0027] gi|315145468|gb|EFT89484.1| ribonuclease III [Enterococcus faecalis TX2141] gi|315146605|gb|EFT90621.1| ribonuclease III [Enterococcus faecalis TX4244] gi|315151034|gb|EFT95050.1| ribonuclease III [Enterococcus faecalis TX0012] gi|315152764|gb|EFT96780.1| ribonuclease III [Enterococcus faecalis TX0031] gi|315154690|gb|EFT98706.1| ribonuclease III [Enterococcus faecalis TX0043] gi|315159400|gb|EFU03417.1| ribonuclease III [Enterococcus faecalis TX0312] gi|315161159|gb|EFU05176.1| ribonuclease III [Enterococcus faecalis TX0645] gi|315164397|gb|EFU08414.1| ribonuclease III [Enterococcus faecalis TX1302] gi|315167205|gb|EFU11222.1| ribonuclease III [Enterococcus faecalis TX1341] gi|315171217|gb|EFU15234.1| ribonuclease III [Enterococcus faecalis TX1342] gi|315172944|gb|EFU16961.1| ribonuclease III [Enterococcus faecalis TX1346] gi|315573246|gb|EFU85437.1| ribonuclease III [Enterococcus faecalis TX0309B] gi|315577147|gb|EFU89338.1| ribonuclease III [Enterococcus faecalis TX0630] gi|315581180|gb|EFU93371.1| ribonuclease III [Enterococcus faecalis TX0309A] gi|323479029|gb|ADX78468.1| ribonuclease III [Enterococcus faecalis 62] gi|327536218|gb|AEA95052.1| ribonuclease III [Enterococcus faecalis OG1RF] gi|329575676|gb|EGG57203.1| ribonuclease III [Enterococcus faecalis TX1467] Length = 243 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 113/221 (51%), Gaps = 7/221 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 + L++R G F + +LLE+A THSS H Y + ERLEFLGD +L L++S L+ Sbjct: 20 TELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVSQYLYLK 79 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+L+ ++V ++ ++ A+E ++I + S+ D+ E+ Sbjct: 80 FPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLCDLFEAF 139 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + ALYLD + A F++ + + +G F D KT+LQE K V+ EY++ Sbjct: 140 LGALYLDQKVGAAKKFIEDVIFPK-IDAGAFSHEMDHKTQLQEVLQRKGDVSIEYRLIKE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP HD F V ++G G SK+ AEQ AA LK Sbjct: 199 EGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALK 239 >gi|307276679|ref|ZP_07557797.1| ribonuclease III [Enterococcus faecalis TX2134] gi|306506789|gb|EFM75941.1| ribonuclease III [Enterococcus faecalis TX2134] Length = 243 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 113/221 (51%), Gaps = 7/221 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 + L++R G F + +LLE+A THSS H Y + ERLEFLGD +L L++S L+ Sbjct: 20 TELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVSQYLYLK 79 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+L+ ++V ++ ++ A+E ++I + S+ D+ E+ Sbjct: 80 FPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLCDLFEAF 139 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + ALYLD + A F++ + + +G F D KT+LQE K V+ EY++ Sbjct: 140 LGALYLDQKVGAAKKFIEDVIFPK-IDAGAFSHELDHKTQLQEVLQRKGDVSIEYRLIKE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP HD F V ++G G SK+ AEQ AA LK Sbjct: 199 EGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALK 239 >gi|148270763|ref|YP_001245223.1| ribonuclease III [Thermotoga petrophila RKU-1] gi|189043372|sp|A5IN74|RNC_THEP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|147736307|gb|ABQ47647.1| RNAse III [Thermotoga petrophila RKU-1] Length = 240 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 112/218 (51%), Gaps = 11/218 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTLLFN 61 +K+ G F N LL +AL HSS ++ ES E+LEFLGD +L L + +L+ Sbjct: 12 FQKKTGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYK 71 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + A+ G+L+ ++ S E + V+REL+L F+ + K SI AD E+ Sbjct: 72 KYPEAEVGDLARAKSAAASEEVLAMVSRELNLGKFLFLGKGEEKTGGRDRDSILADAFEA 131 Query: 122 LIAALYLDGG---IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 L+AA+YLD G I+ + + ++ ++ G+ D KT LQE ++ V PEY + Sbjct: 132 LLAAIYLDQGYHKIKELFEEEFELYIEKIMR-GEMLFDYKTALQEIVQSEHKVPPEYVLV 190 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 D D F V V + G + A G +K+ AE+ AA Sbjct: 191 RTEKNDGDRIFVVEVRVDGKSIAMGRGRTKKEAEKEAA 228 >gi|326561464|gb|EGE11814.1| ribonuclease III [Moraxella catarrhalis 46P47B1] gi|326562236|gb|EGE12564.1| ribonuclease III [Moraxella catarrhalis 7169] gi|326567190|gb|EGE17312.1| ribonuclease III [Moraxella catarrhalis BC1] gi|326568472|gb|EGE18552.1| ribonuclease III [Moraxella catarrhalis BC7] Length = 262 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 114/224 (50%), Gaps = 10/224 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L ++GY F + SLL +ALTH S + ++SYERLEFLGD +L +I+ LF + Sbjct: 33 PVLYAKLGYTFKDVSLLCRALTHRS--YDPKKSYERLEFLGDALLSSIITKALFAQYPKH 90 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ +LV ET Q+A L+L+ ++ + RK SI AD VE+LIAA+ Sbjct: 91 DEGKLTRMRAALVRQETLVQIADHLELSRYLILGVGERKGGGRHRASILADAVEALIAAV 150 Query: 127 YLDG----GIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKV--T 178 YLD G + V ++K + G+ + +DAK+ LQE P Y++ T Sbjct: 151 YLDNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQT 210 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 S P+ + G+ P S+R AEQ A ++ + Sbjct: 211 LGSAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQ 254 >gi|257063721|ref|YP_003143393.1| ribonuclease III [Slackia heliotrinireducens DSM 20476] gi|256791374|gb|ACV22044.1| ribonuclease III [Slackia heliotrinireducens DSM 20476] Length = 300 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 76/212 (35%), Positives = 107/212 (50%), Gaps = 4/212 (1%) Query: 13 IGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 IG F N +L A+TH S + + SYERLEFLGD ILG +++ F+ + EG Sbjct: 19 IGTQFGNTDILLHAITHPSATEGKPVKLSYERLEFLGDSILGAIVANEAFHRYPDLDEGG 78 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ +LVS + S+VA EL I S + + S +V E+++AALYLD Sbjct: 79 LTRIKVALVSGASLSKVAAELGFEDIIVFGSSEQGTGKRGLHSALENVYEAVVAALYLDQ 138 Query: 131 GIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 G+E A +FV K R + + K+ LQE + G+TP YK+ GP HD F Sbjct: 139 GMEGARSFVMKTLVPRMSRELATEPENPKSALQEKLQEE-GITPTYKLVETQGPPHDRTF 197 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V A A GM +K+ +E AA L+ Sbjct: 198 VSQVFAGMKALASGMGRTKKESESQAAKAALE 229 >gi|312127786|ref|YP_003992660.1| ribonuclease iii [Caldicellulosiruptor hydrothermalis 108] gi|311777805|gb|ADQ07291.1| ribonuclease III [Caldicellulosiruptor hydrothermalis 108] Length = 222 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 71/216 (32%), Positives = 119/216 (55%), Gaps = 9/216 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +EK +GY F +++LL ALTH S +HS + YERLEFLGD L L++S LF +F E Sbjct: 4 IEKALGYKFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELVVSKYLFVNFPDLSE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GEL+ ++V ++T S+VA +L+L + I + + SI ADV+E++ A+++ Sbjct: 64 GELTNIRAAVVCSQTLSEVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAIFI 123 Query: 129 DGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 + G + + K Q+A+ +GK D KT+LQE + + K+ ++ Sbjct: 124 ESGFDKLEKIIVNLLKPYIQKAV-AGKLFYDYKTKLQEIVQRE----GKKKIVYKDCEII 178 Query: 186 DPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + F + + G ++G SK+ A+Q AA + L Sbjct: 179 EKKYFKSELFVEGKKVSEGYGTSKKEAQQDAAYKFL 214 >gi|319941434|ref|ZP_08015762.1| ribonuclease III [Sutterella wadsworthensis 3_1_45B] gi|319805054|gb|EFW01884.1| ribonuclease III [Sutterella wadsworthensis 3_1_45B] Length = 226 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 11/200 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF--- 60 L LE+RIGY F ++ LL +A+TH S + QE ERLEFLGD +L +I LF Sbjct: 2 LSLEALEERIGYVFQDKKLLRRAVTHRSFA---QEHNERLEFLGDSVLNCVIGYALFLRD 58 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 HF+ EGELS +LV +T ++A ++D++SF+ + K + SI AD +E Sbjct: 59 KHFN---EGELSRVRANLVCEKTLHEIALKIDVSSFLYMGEGEVKTGGAHRASILADAME 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ A++ + G + A + K + L + +D KT LQE PEY + Sbjct: 116 AIFGAVFREAGFDTAQRVILKLYDPILTGLTPEQMSKDPKTRLQELLQGDHLPRPEYAIV 175 Query: 179 FRSGPDHDPRFTVVVEISGL 198 +G H+ RF I L Sbjct: 176 AATGAAHERRFECECRIERL 195 >gi|326576294|gb|EGE26209.1| ribonuclease III [Moraxella catarrhalis CO72] Length = 262 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 114/224 (50%), Gaps = 10/224 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L ++GY F + SLL +ALTH S + ++SYERLEFLGD +L +I+ LF + Sbjct: 33 PVLYAKLGYTFKDVSLLCRALTHRS--YDPKKSYERLEFLGDALLSSIITKALFAQYPKH 90 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ +LV ET Q+A L+L+ ++ + RK SI AD VE+LIAA+ Sbjct: 91 DEGKLTRMRAALVRQETLVQIADHLELSRYLILGVGERKGGGRHRASILADAVEALIAAV 150 Query: 127 YLDG----GIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKV--T 178 YLD G + V ++K + G+ + +DAK+ LQE P Y++ T Sbjct: 151 YLDNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQT 210 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 S P+ + G+ P S+R AEQ A ++ + Sbjct: 211 LGSAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQ 254 >gi|108762302|ref|YP_631944.1| ribonuclease III [Myxococcus xanthus DK 1622] gi|123074286|sp|Q1D5X9|RNC_MYXXD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|108466182|gb|ABF91367.1| ribonuclease III [Myxococcus xanthus DK 1622] Length = 260 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 114/224 (50%), Gaps = 6/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 R LE R+G +F+ +ALTH + + ++ +RLEFLGD ++ L +S L Sbjct: 15 RVQLLESRLGLSFSRMETALEALTHKTYVNETRDKELKDNQRLEFLGDSVVNLAVSHRLM 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+L+ +V+ + ++VAR + L + + S+ AD +E Sbjct: 75 ARCPGLPEGDLTKMRARVVNEDGLARVARTIPLGDLLLLGRGELMSGGREKNSVLADALE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ A++L G++ A T VD+Y+ + SG+ R D KT LQE AH + + P Y+V Sbjct: 135 AVFGAVFLTSGLDAAVTLVDRYFADLLDEVSSGQGRLDYKTLLQEMAHERLKLQPRYRVV 194 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGP+H F V + + A A+ SK+ AEQ AA L++ Sbjct: 195 SESGPEHSKVFEVELMLGETAFARATGRSKKEAEQSAAQATLEK 238 >gi|23098981|ref|NP_692447.1| ribonuclease III [Oceanobacillus iheyensis HTE831] gi|38372423|sp|Q8ER05|RNC_OCEIH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|22777209|dbj|BAC13482.1| ribonuclease III [Oceanobacillus iheyensis HTE831] Length = 228 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 110/218 (50%), Gaps = 7/218 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64 LE+ +G +F ++LL++A THSS + +++ ERLEFLGD +L L +S L+ + Sbjct: 6 LEEHLGISFQQKALLKEAFTHSSYVNEHRKQRLSDNERLEFLGDAVLELAVSQYLYRNNK 65 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGE++ ++V + A EL+ F+R+ ++ +I AD E+ + Sbjct: 66 DMPEGEMTKLRAAIVCEPSLKNFAEELEFGKFLRLGKGEQQTGGRERPAILADAFEAFLG 125 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G + F++ + + L +G F D K++LQE+ EY++ G Sbjct: 126 ALYLDQGFDNVLDFLNIHVFPK-LTTGAFSHAMDYKSQLQEFVQQHKDQKIEYRIIEEKG 184 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P H+ F V I A G +K+ AEQ AA L Sbjct: 185 PSHNKEFVAEVVIQEKAAGIGTGRTKKEAEQRAAKNAL 222 >gi|253573486|ref|ZP_04850829.1| ribonuclease III [Paenibacillus sp. oral taxon 786 str. D14] gi|251847014|gb|EES75019.1| ribonuclease III [Paenibacillus sp. oral taxon 786 str. D14] Length = 232 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 103/209 (49%), Gaps = 5/209 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L++++ AF NR LL++A TH+S + ++ E ERLEFLGD +L L +S L+ F Sbjct: 8 LQQKLELAFQNRQLLKQAFTHASYVNEHRFSQYEDNERLEFLGDAVLELTVSEHLYRLFP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ ++V + + A L+ ++ + ++ ADV ES I Sbjct: 68 DRPEGELTKLRAAIVCEPSLVKFAENLEFGKYVLLGKGEELTGGRTRPALLADVFESFIG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ALYLD G+E F+ ++ GK D KTELQE T EY++ GP Sbjct: 128 ALYLDQGLEAVTAFLHRHVFPNLTLDGKLSTGDFKTELQELTQHHGMGTLEYRIIEERGP 187 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 H+ F V + G QG SK+ AE Sbjct: 188 AHEREFVAEVRMDGRPLGQGTGRSKKEAE 216 >gi|307718753|ref|YP_003874285.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM 6192] gi|306532478|gb|ADN02012.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM 6192] gi|315185644|gb|EFU19412.1| RNAse III [Spirochaeta thermophila DSM 6578] Length = 194 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 96/179 (53%), Gaps = 2/179 (1%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD +LGL ++ L+ F +EGEL+ + +VS +T ++AR + + +FI +S Sbjct: 5 ERLEFLGDAVLGLAVADYLYRTFPEKQEGELARIKSFVVSEDTLYEIARRIKVDNFILIS 64 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAK 158 ++ AD +E++I A +LD G E A FV + K + ++D K Sbjct: 65 KGEEYAGGRTKKALLADAMEAIIGAYFLDAGFEAARDFVLRLVVPEIEKVVENRHKKDYK 124 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 T LQE+ F P Y+V + GP+H+ F + V+I G +K+ AEQ AA+ Sbjct: 125 TLLQEYVQKNFKTYPRYRVVEKLGPEHNRTFRIEVQIRDKKYGPGEGKNKKEAEQSAAS 183 >gi|168493169|ref|ZP_02717312.1| ribonuclease III [Streptococcus pneumoniae CDC3059-06] gi|183576640|gb|EDT97168.1| ribonuclease III [Streptococcus pneumoniae CDC3059-06] Length = 232 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 109/222 (49%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L+ F +++LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLKNHFAIEFTDKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD + F+ + + +++G+F D KT LQE V Y+V Sbjct: 126 LGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTYLQELLQVNGDVAIRYQVISE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|227872403|ref|ZP_03990750.1| ribonuclease III [Oribacterium sinus F0268] gi|227841763|gb|EEJ52046.1| ribonuclease III [Oribacterium sinus F0268] Length = 241 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 125/228 (54%), Gaps = 12/228 (5%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNH 62 S LE+ +GY F ++ LL ALTH S S H + S +RLEFLGD +L L+ STLL++ Sbjct: 12 SKLEEDLGYHFQDQKLLLHALTHPSYSNEMGHPKEASNQRLEFLGDAVLELVSSTLLYHK 71 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 +EG ++ +LV + VA+ L L+S++ + ++ F S+ +D +E++ Sbjct: 72 KPVIQEGRMTKLRAALVCESALAVVAKSLQLSSYLLLGKGEEREGIQFRDSVLSDALEAV 131 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTF 179 I A+YLDGG++ A FV + + L + + +DAKT LQE+ AK EY + Sbjct: 132 IGAIYLDGGMKKAECFV----RGKVLSDIEHKTLFQDAKTMLQEYCTAK-RYPLEYDLLE 186 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 SGP H + V V+++ G SK+ AEQ AA L++ + T Sbjct: 187 ESGPFHQRFYKVSVKVNEEVYGIGEGSSKKKAEQAAAYFALEKIKVET 234 >gi|170289493|ref|YP_001739731.1| ribonuclease III [Thermotoga sp. RQ2] gi|238688867|sp|B1LCY9|RNC_THESQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|170176996|gb|ACB10048.1| Ribonuclease III [Thermotoga sp. RQ2] Length = 240 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 11/218 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTLLFN 61 +K+ G F N LL +AL HSS ++ ES E+LEFLGD +L L + +L+ Sbjct: 12 FQKKTGINFKNEELLFRALCHSSYANEQNQAGRKNVESNEKLEFLGDAVLELFVCEILYK 71 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + A+ G+L+ ++ S E + V+R+++L F+ + K SI AD E+ Sbjct: 72 KYPEAEVGDLARVKSAAASEEVLALVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEA 131 Query: 122 LIAALYLDGGIEVAGTFVDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 L+AA+YLD G E ++ ++ ++ +K G+ D KT LQE ++ V PEY + Sbjct: 132 LLAAIYLDQGYEKIKELFEQEFEFYIEKIMK-GEMLFDYKTALQEIVQSEHKVPPEYVLV 190 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 D D F V V + G A G +K+ AE+ AA Sbjct: 191 RTEKNDGDRIFVVEVRVDGKTIATGRGRTKKEAEKEAA 228 >gi|29377554|ref|NP_816708.1| ribonuclease III [Enterococcus faecalis V583] gi|255970707|ref|ZP_05421293.1| ribonuclease III [Enterococcus faecalis T1] gi|255974283|ref|ZP_05424869.1| ribonuclease III [Enterococcus faecalis T2] gi|256618145|ref|ZP_05474991.1| ribonuclease III [Enterococcus faecalis ATCC 4200] gi|256761074|ref|ZP_05501654.1| ribonuclease III [Enterococcus faecalis T3] gi|256958378|ref|ZP_05562549.1| ribonuclease III [Enterococcus faecalis DS5] gi|256960445|ref|ZP_05564616.1| ribonuclease III [Enterococcus faecalis Merz96] gi|256962935|ref|ZP_05567106.1| ribonuclease III [Enterococcus faecalis HIP11704] gi|257078311|ref|ZP_05572672.1| ribonuclease III [Enterococcus faecalis JH1] gi|257080500|ref|ZP_05574861.1| ribonuclease III [Enterococcus faecalis E1Sol] gi|257083236|ref|ZP_05577597.1| ribonuclease III [Enterococcus faecalis Fly1] gi|257088212|ref|ZP_05582573.1| ribonuclease III [Enterococcus faecalis D6] gi|257091337|ref|ZP_05585698.1| ribonuclease III [Enterococcus faecalis CH188] gi|257417226|ref|ZP_05594220.1| ribonuclease III [Enterococcus faecalis AR01/DG] gi|257417943|ref|ZP_05594937.1| ribonuclease III [Enterococcus faecalis T11] gi|257420449|ref|ZP_05597439.1| ribonuclease III [Enterococcus faecalis X98] gi|294780225|ref|ZP_06745597.1| ribonuclease III [Enterococcus faecalis PC1.1] gi|300861565|ref|ZP_07107649.1| ribonuclease III [Enterococcus faecalis TUSoD Ef11] gi|75541427|sp|Q82ZG1|RNC_ENTFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|29345021|gb|AAO82778.1| ribonuclease III [Enterococcus faecalis V583] gi|255961725|gb|EET94201.1| ribonuclease III [Enterococcus faecalis T1] gi|255967155|gb|EET97777.1| ribonuclease III [Enterococcus faecalis T2] gi|256597672|gb|EEU16848.1| ribonuclease III [Enterococcus faecalis ATCC 4200] gi|256682325|gb|EEU22020.1| ribonuclease III [Enterococcus faecalis T3] gi|256948874|gb|EEU65506.1| ribonuclease III [Enterococcus faecalis DS5] gi|256950941|gb|EEU67573.1| ribonuclease III [Enterococcus faecalis Merz96] gi|256953431|gb|EEU70063.1| ribonuclease III [Enterococcus faecalis HIP11704] gi|256986341|gb|EEU73643.1| ribonuclease III [Enterococcus faecalis JH1] gi|256988530|gb|EEU75832.1| ribonuclease III [Enterococcus faecalis E1Sol] gi|256991266|gb|EEU78568.1| ribonuclease III [Enterococcus faecalis Fly1] gi|256996242|gb|EEU83544.1| ribonuclease III [Enterococcus faecalis D6] gi|257000149|gb|EEU86669.1| ribonuclease III [Enterococcus faecalis CH188] gi|257159054|gb|EEU89014.1| ribonuclease III [Enterococcus faecalis ARO1/DG] gi|257159771|gb|EEU89731.1| ribonuclease III [Enterococcus faecalis T11] gi|257162273|gb|EEU92233.1| ribonuclease III [Enterococcus faecalis X98] gi|294452768|gb|EFG21198.1| ribonuclease III [Enterococcus faecalis PC1.1] gi|295114417|emb|CBL33054.1| RNAse III [Enterococcus sp. 7L76] gi|300849026|gb|EFK76779.1| ribonuclease III [Enterococcus faecalis TUSoD Ef11] Length = 230 Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 113/221 (51%), Gaps = 7/221 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 + L++R G F + +LLE+A THSS H Y + ERLEFLGD +L L++S L+ Sbjct: 7 TELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVSQYLYLK 66 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+L+ ++V ++ ++ A+E ++I + S+ D+ E+ Sbjct: 67 FPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLCDLFEAF 126 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + ALYLD + A F++ + + +G F D KT+LQE K V+ EY++ Sbjct: 127 LGALYLDQKVGAAKKFIEDVIFPK-IDAGAFSHEMDHKTQLQEVLQRKGDVSIEYRLIKE 185 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP HD F V ++G G SK+ AEQ AA LK Sbjct: 186 EGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALK 226 >gi|50913818|ref|YP_059790.1| ribonuclease III [Streptococcus pyogenes MGAS10394] gi|56808931|ref|ZP_00366639.1| COG0571: dsRNA-specific ribonuclease [Streptococcus pyogenes M49 591] gi|139474237|ref|YP_001128953.1| ribonuclease III [Streptococcus pyogenes str. Manfredo] gi|209559002|ref|YP_002285474.1| ribonuclease III [Streptococcus pyogenes NZ131] gi|255591218|ref|XP_002535468.1| ribonuclease III, putative [Ricinus communis] gi|306827819|ref|ZP_07461089.1| ribonuclease III [Streptococcus pyogenes ATCC 10782] gi|73917584|sp|Q5XDA6|RNC_STRP6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043367|sp|A2RFW8|RNC_STRPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741379|sp|B5XKB7|RNC_STRPZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|50902892|gb|AAT86607.1| Ribonuclease III [Streptococcus pyogenes MGAS10394] gi|134272484|emb|CAM30747.1| ribonuclease III [Streptococcus pyogenes str. Manfredo] gi|209540203|gb|ACI60779.1| Ribonuclease III [Streptococcus pyogenes NZ131] gi|223523016|gb|EEF26915.1| ribonuclease III, putative [Ricinus communis] gi|304429989|gb|EFM33028.1| ribonuclease III [Streptococcus pyogenes ATCC 10782] Length = 230 Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 7/210 (3%) Query: 17 FANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F + +LLE A TH+S ++ ++ ERLEFLGD +L L+IS LF + EG++S Sbjct: 16 FNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMS 75 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + +V E+ + +R ++I++ K +I D+ E+ + AL LD GI Sbjct: 76 KLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGI 135 Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 + F+ + + K G F R D KT LQE+ K V +Y+V GP H +F Sbjct: 136 DAVRRFLKQVMIPQVEK-GNFERVKDYKTCLQEFLQTKGDVVIDYQVISEKGPAHAKQFE 194 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V + ++G ++G+ SK+ AEQ AA L Sbjct: 195 VSIVVNGAVLSKGLGKSKKLAEQDAAKNAL 224 >gi|255506876|ref|ZP_05382515.1| ribonuclease III [Chlamydia trachomatis D(s)2923] Length = 231 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 3/215 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDS 65 +E ++ + F++ LL ALTH S + + +E ERLEFLGD +LGL+++ LF F + Sbjct: 10 IESKLNFTFSHPKLLITALTHPSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHLFLLFPA 69 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG LS +LV+AE C + ++L L + + + S A++ E+++ A Sbjct: 70 LNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLFEAILGA 129 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +YLDGG+ A + + + K LQ++ V P YK D Sbjct: 130 VYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALPWKSEDG 189 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P + V V ++G +G SK+ AE++AA + L Sbjct: 190 SPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224 >gi|147669550|ref|YP_001214368.1| ribonuclease III [Dehalococcoides sp. BAV1] gi|289432809|ref|YP_003462682.1| ribonuclease III [Dehalococcoides sp. GT] gi|146270498|gb|ABQ17490.1| RNAse III [Dehalococcoides sp. BAV1] gi|288946529|gb|ADC74226.1| ribonuclease III [Dehalococcoides sp. GT] Length = 248 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 10/227 (4%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSS-----ISHSYQESYERLEFLGDRILGLLISTL 58 L + LE +G F SLLE+AL H+S +HS S ER+EFLGD +LG++ + Sbjct: 13 LDLTELENSLGVKFEQPSLLEQALIHTSWVNENPNHS-SGSNERMEFLGDAVLGVIFADR 71 Query: 59 LFNHFDSAKEGELSVRFNSL-VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L++ F +EG+L+ RF SL V E+ +VA ++L ++ + F + A Sbjct: 72 LYHDFPDIQEGDLT-RFRSLLVRRESLVRVALGINLGKYLYLGRGEDVSKGRFKPANLAG 130 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEY 175 E+++AA+Y+D G++V + + +K +++ D K+ LQE A+ +TP Y Sbjct: 131 AFEAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQELIQAQLQLTPRY 190 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 ++T SGP+H+ F V A+G SK+ AE AA L++ Sbjct: 191 RITNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAAKVALQQ 237 >gi|227890689|ref|ZP_04008494.1| ribonuclease III [Lactobacillus salivarius ATCC 11741] gi|227867627|gb|EEJ75048.1| ribonuclease III [Lactobacillus salivarius ATCC 11741] Length = 232 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 9/222 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES------YERLEFLGDRILGLLISTLLFNH 62 L++ F + LL+ A TH+S + E YER+EFLGD ++ L +S ++ H Sbjct: 9 LKRDFDITFKDVDLLDAAFTHASYVNETPERKKKLKYYERIEFLGDAVMQLCVSEYIYEH 68 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG++S ++V A++ S+ A E +IR+ K S+ D+ ES Sbjct: 69 YPEMPEGKMSRLRAAMVRADSFSKFAIECHFNEYIRLGKGEEKGNARQRPSLLCDIFESF 128 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G + F+ K + L+ G F D KTELQE +Y Sbjct: 129 IGALYLDQGKDEVVRFISKVIFPK-LELGWFDHMMDNKTELQEVLQQNGECKIKYNEVNV 187 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GPD++ +T+ V ++ +G +K+AAEQ+AA + LK+ Sbjct: 188 TGPDNERVYTMNVVVNNEVMGEGTGRTKKAAEQMAAYQALKK 229 >gi|15674631|ref|NP_268805.1| ribonuclease III [Streptococcus pyogenes M1 GAS] gi|19745653|ref|NP_606789.1| ribonuclease III [Streptococcus pyogenes MGAS8232] gi|21909911|ref|NP_664179.1| ribonuclease III [Streptococcus pyogenes MGAS315] gi|28896390|ref|NP_802740.1| ribonuclease III [Streptococcus pyogenes SSI-1] gi|71910251|ref|YP_281801.1| ribonuclease III [Streptococcus pyogenes MGAS5005] gi|94988068|ref|YP_596169.1| ribonuclease III [Streptococcus pyogenes MGAS9429] gi|94991954|ref|YP_600053.1| ribonuclease III [Streptococcus pyogenes MGAS2096] gi|94993854|ref|YP_601952.1| ribonuclease III [Streptococcus pyogenes MGAS10750] gi|54039244|sp|P66671|RNC_STRP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54039245|sp|P66672|RNC_STRP8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54041616|sp|P66670|RNC_STRP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043363|sp|Q1JCZ9|RNC_STRPB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043364|sp|Q1JMX4|RNC_STRPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043366|sp|Q1J7V3|RNC_STRPF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|13621744|gb|AAK33526.1| putative ribonuclease III [Streptococcus pyogenes M1 GAS] gi|19747784|gb|AAL97288.1| putative ribonuclease III [Streptococcus pyogenes MGAS8232] gi|21904099|gb|AAM78982.1| putative ribonuclease III [Streptococcus pyogenes MGAS315] gi|28811641|dbj|BAC64573.1| putative ribonuclease III [Streptococcus pyogenes SSI-1] gi|71853033|gb|AAZ51056.1| ribonuclease III [Streptococcus pyogenes MGAS5005] gi|94541576|gb|ABF31625.1| ribonuclease III [Streptococcus pyogenes MGAS9429] gi|94545462|gb|ABF35509.1| Ribonuclease III [Streptococcus pyogenes MGAS2096] gi|94547362|gb|ABF37408.1| Ribonuclease III [Streptococcus pyogenes MGAS10750] Length = 230 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 7/210 (3%) Query: 17 FANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F + +LLE A TH+S ++ ++ ERLEFLGD +L L+IS LF + EG++S Sbjct: 16 FNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMS 75 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + +V E+ + +R ++I++ K +I D+ E+ + AL LD GI Sbjct: 76 KLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGI 135 Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 + F+ + + K G F R D KT LQE+ K V +Y+V GP H +F Sbjct: 136 DAVRRFLKQVMIPQVEK-GNFERVKDYKTCLQEFLQTKGDVAIDYQVISEKGPAHAKQFE 194 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V + ++G ++G+ SK+ AEQ AA L Sbjct: 195 VSIVVNGAVLSKGLGKSKKLAEQDAAKNAL 224 >gi|71903092|ref|YP_279895.1| ribonuclease III [Streptococcus pyogenes MGAS6180] gi|90101651|sp|Q48UR6|RNC_STRPM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71802187|gb|AAX71540.1| ribonuclease III [Streptococcus pyogenes MGAS6180] Length = 230 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 7/210 (3%) Query: 17 FANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F + +LLE A TH+S ++ ++ ERLEFLGD +L L+IS LF + EG++S Sbjct: 16 FNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMS 75 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + +V E+ + +R ++I++ K +I D+ E+ + AL LD GI Sbjct: 76 KLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGI 135 Query: 133 EVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 + F+ + + K G F RD KT LQE+ K V +Y+V GP H +F Sbjct: 136 DAVRRFLKQVMIPQVEK-GNFERVRDYKTCLQEFLQTKGDVAIDYQVISEKGPAHAKQFE 194 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V + ++G ++G+ SK+ AEQ AA L Sbjct: 195 VSIVVNGAVLSKGLGKSKKLAEQDAAKNAL 224 >gi|225868184|ref|YP_002744132.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus] gi|259646553|sp|C0MCR4|RNC_STRS7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|225701460|emb|CAW98596.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus] Length = 230 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 7/218 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LE F ++ LLE A TH+S ++ ++ ERLEFLGD +L L+IS LF + Sbjct: 8 LENSFNIRFDDKRLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG++S +++V E+ + +R ++I++ K +I D+ E+ + Sbjct: 68 KQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGKGEEKSGGRHRDTILGDLFEAFLG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL LD GIE F+++ + ++ G F +D KT LQE AK V +Y+V +G Sbjct: 128 ALLLDKGIEEVRRFLNQVMIPQ-VEQGTFEKVKDYKTCLQELLQAKGDVVIDYQVISETG 186 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P H +F V V + ++G SK+ AEQ AA L Sbjct: 187 PAHAKQFEVAVLVDEDRLSKGTGRSKKLAEQDAAKNAL 224 >gi|73748788|ref|YP_308027.1| ribonuclease III [Dehalococcoides sp. CBDB1] gi|90101624|sp|Q3ZXY9|RNC_DEHSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|73660504|emb|CAI83111.1| ribonuclease III [Dehalococcoides sp. CBDB1] Length = 237 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 10/227 (4%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSS-----ISHSYQESYERLEFLGDRILGLLISTL 58 L + LE +G F SLLE+AL H+S +HS S ER+EFLGD +LG++ + Sbjct: 2 LDLTELENSLGVKFEQPSLLEQALIHTSWVNENPNHS-SGSNERMEFLGDAVLGVIFADR 60 Query: 59 LFNHFDSAKEGELSVRFNSL-VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L++ F +EG+L+ RF SL V E+ +VA ++L ++ + F + A Sbjct: 61 LYHDFPDIQEGDLT-RFRSLLVRRESLVRVALGINLGKYLYLGRGEDVSKGRFKPANLAG 119 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEY 175 E+++AA+Y+D G++V + + +K +++ D K+ LQE A+ +TP Y Sbjct: 120 AFEAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQELIQAQLQLTPRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 ++T SGP+H+ F V A+G SK+ AE AA L++ Sbjct: 180 RITNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAAKVALQQ 226 >gi|114331755|ref|YP_747977.1| ribonuclease III [Nitrosomonas eutropha C91] gi|122313494|sp|Q0AF70|RNC_NITEC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|114308769|gb|ABI60012.1| RNAse III [Nitrosomonas eutropha C91] Length = 245 Score = 101 bits (251), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 104/221 (47%), Gaps = 10/221 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+ +++GY F LL++ALTH S+ + ERLEFLGD +L +STLLF F Sbjct: 24 YTVFSQKLGYTFKQPDLLQEALTHRSLGFP---NNERLEFLGDSVLNCAVSTLLFKRFLL 80 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ + V+ + Q+A L + I + RK SI A+ +E++I A Sbjct: 81 LPEGDLTRLRANFVNQDALHQLASALGIGELILLGDGERKSGGHQRPSILANAMEAIIGA 140 Query: 126 LYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL+ G E V D Q L F +D KT LQE+ ++ PEY Sbjct: 141 IYLESGFEKVDQVIVALYDPLLNQ--LDPDLFGKDPKTLLQEYLQSRKVDLPEYSTLLTR 198 Query: 182 GPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 G H F V I A G S+R AEQ AA K Sbjct: 199 GDAHAQVFHVECVIPEFAIRTSGEGTSRRRAEQEAARRAYK 239 >gi|253997000|ref|YP_003049064.1| ribonuclease III [Methylotenera mobilis JLW8] gi|253983679|gb|ACT48537.1| ribonuclease III [Methylotenera mobilis JLW8] Length = 230 Score = 101 bits (251), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 67/185 (36%), Positives = 95/185 (51%), Gaps = 5/185 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +R+ + F N SLL +ALTH S + ++ ERLEFLGD L +I+ L+ F E Sbjct: 6 LLRRLSHQFVNESLLTQALTHRSYA---GQNNERLEFLGDGALNFIIAHQLYQRFPKLAE 62 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS LV T S++A L+L + + K SI AD +E++I A+YL Sbjct: 63 GDLSRLRAQLVKEATLSEIALSLNLGDALLLGEGELKSAGWRRPSILADALEAIIGAVYL 122 Query: 129 DGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G E A TFV + K + +D K+ LQE ++ PEY V SG H+ Sbjct: 123 DSGFEAAQTFVLGLYAGKLETIDPKVIDKDPKSLLQELLQSRKIAVPEYTVIHTSGEAHE 182 Query: 187 PRFTV 191 +F V Sbjct: 183 QKFVV 187 >gi|195978496|ref|YP_002123740.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975201|gb|ACG62727.1| ribonuclease III Rnc [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 231 Score = 101 bits (251), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 7/218 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LE F ++ LLE A TH+S ++ ++ ERLEFLGD +L L+IS LF + Sbjct: 9 LENSFNIRFDDKRLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG++S +++V E+ + +R ++I++ K +I D+ E+ + Sbjct: 69 KQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGKGEEKSGGRHRETILGDLFEAFLG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL LD GIE F+++ + ++ G F +D KT LQE AK V +Y+V +G Sbjct: 129 ALLLDKGIEEVRRFLNQVMIPQ-VEQGTFEKVKDYKTCLQELLQAKGDVVIDYQVISETG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P H +F V V + ++G SK+ AEQ AA L Sbjct: 188 PAHAKQFEVAVLVDEDRLSKGTGRSKKLAEQDAAKNAL 225 >gi|50365047|ref|YP_053472.1| ribonuclease III, dsRNA-specific ribonuclease [Mesoplasma florum L1] gi|81391925|sp|Q6F1N5|RNC_MESFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|50363603|gb|AAT75588.1| ribonuclease III, dsRNA-specific ribonuclease [Mesoplasma florum L1] Length = 231 Score = 101 bits (251), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 71/217 (32%), Positives = 115/217 (52%), Gaps = 10/217 (4%) Query: 14 GYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 G + + ALTH+S ++ +E+Y+RLEFLGD +L + +S L+ +F +A EG+L Sbjct: 11 GIKINDSKIFSTALTHNSYANETKTKETYQRLEFLGDAVLQMYVSKFLYLNFTNAPEGKL 70 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + + +V ET S++A+ +DL IR+ K SI +DV E++ AA+YLD Sbjct: 71 TKTRSDIVRQETLSEIAKMIDLGKIIRLGQGEIKSKGYEKPSILSDVYEAVTAAIYLDQT 130 Query: 132 IEVAGTFVD----KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 EV +++ KY ++ K + D K+ELQE A+ EY+V + + D Sbjct: 131 EEVLISWIKSTIFKYIEKNDYK--ELNHDYKSELQEIIQAEIRSDLEYRVESQKHIEKDN 188 Query: 188 R--FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + +TV V + G G SK+ A Q AA + L + Sbjct: 189 KIEYTVSVNLDGKKYGIGTGFSKQEASQNAAKDCLNK 225 >gi|42766|emb|CAA26504.1| unnamed protein product [Escherichia coli] Length = 227 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 95/170 (55%), Gaps = 5/170 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAK 168 +LI ++LD I+ + +++ R + G ++D KT LQE+ + Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGR 167 >gi|225870877|ref|YP_002746824.1| ribonuclease III [Streptococcus equi subsp. equi 4047] gi|254807900|sp|C0M8Y3|RNC_STRE4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|225700281|emb|CAW94534.1| ribonuclease III [Streptococcus equi subsp. equi 4047] Length = 230 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 7/218 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LE F ++ LLE A TH+S ++ ++ ERLEFLGD +L L+IS LF + Sbjct: 8 LENSFNIRFDDKRLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG++S +++V E+ + +R ++I++ K +I D+ E+ + Sbjct: 68 KQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGRGEEKSGGRHRDTILGDLFEAFLG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL LD GIE F+++ + ++ G F +D KT LQE AK V +Y+V +G Sbjct: 128 ALLLDKGIEEVRRFLNQVMIPQ-VEQGTFEKVKDYKTCLQELLQAKGDVVIDYQVISETG 186 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P H +F V V + ++G SK+ AEQ AA L Sbjct: 187 PAHAKQFEVAVLVGEDHLSKGTGRSKKLAEQDAAKNAL 224 >gi|319946572|ref|ZP_08020806.1| ribonuclease III [Streptococcus australis ATCC 700641] gi|319746620|gb|EFV98879.1| ribonuclease III [Streptococcus australis ATCC 700641] Length = 241 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/209 (33%), Positives = 107/209 (51%), Gaps = 8/209 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M AL Y+ L ++ F + LLE A TH+S ++ ++ ERLEFLGD IL L+IS Sbjct: 9 MQAL-YNLLAEKFRLTFDDTELLETAFTHTSYANEHRLLKISHNERLEFLGDAILQLVIS 67 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + S EG+LS + +V E+ + +R+ FI++ K +I Sbjct: 68 EYLFALYPSKPEGDLSKMRSMIVREESLAGFSRDCGFDQFIKLGKGEEKSGGRNRDTILG 127 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E F+ + + +++G+F + D KT LQE V Sbjct: 128 DLFEAFLGALLLDKGVETVRDFIQQVMIPK-VEAGQFEQVIDYKTRLQEILQIHGDVLIT 186 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 Y+VT SGP H F V V ++G QG Sbjct: 187 YEVTSESGPAHAKEFEVQVSVNGKIIGQG 215 >gi|166154508|ref|YP_001654626.1| ribonuclease III [Chlamydia trachomatis 434/Bu] gi|255348658|ref|ZP_05380665.1| ribonuclease III [Chlamydia trachomatis 70] gi|255503198|ref|ZP_05381588.1| ribonuclease III [Chlamydia trachomatis 70s] gi|301335768|ref|ZP_07224012.1| ribonuclease III [Chlamydia trachomatis L2tet1] gi|238687367|sp|B0B7L3|RNC_CHLT2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|165930496|emb|CAP03989.1| ribonuclease III [Chlamydia trachomatis 434/Bu] gi|289525336|emb|CBJ14812.1| ribonuclease III [Chlamydia trachomatis Sweden2] gi|296434887|gb|ADH17065.1| ribonuclease III [Chlamydia trachomatis E/150] gi|296438607|gb|ADH20760.1| ribonuclease III [Chlamydia trachomatis E/11023] Length = 231 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 3/215 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDS 65 +E ++ + F++ LL ALTH S + + +E ERLEFLGD +LGL+++ LF F + Sbjct: 10 IESKLNFTFSHPRLLITALTHPSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHLFLLFPA 69 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG LS +LV+AE C + ++L L + + + S A++ E+++ A Sbjct: 70 LNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLFEAILGA 129 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +YLDGG+ A + + + K LQ++ V P YK D Sbjct: 130 VYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALPWKSEDG 189 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P + V V ++G +G SK+ AE++AA + L Sbjct: 190 SPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224 >gi|307150264|ref|YP_003885648.1| ribonuclease III [Cyanothece sp. PCC 7822] gi|306980492|gb|ADN12373.1| ribonuclease III [Cyanothece sp. PCC 7822] Length = 228 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 105/221 (47%), Gaps = 12/221 (5%) Query: 17 FANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F N+ L ALTH S + + E ERLEFLGD IL + L+ + E +L+ Sbjct: 7 FKNQQLWLCALTHRSYINEHSGINEHNERLEFLGDAILAFVAGEFLYQRYPHLSEAQLTR 66 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 LV ++ A +L + +R+ KD ++ +D E++I A YLD G++ Sbjct: 67 LRAKLVDETQLARFAVQLGIGELMRLGKGAIKDGGRENPALLSDTFEAIIGAYYLDAGVD 126 Query: 134 VAGTFVDKYWK---------QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 FV ++ Q + + K DAK Q+WA A+F PEY + SGPD Sbjct: 127 AVRNFVHPLFQSVADILMVSQSEVATTKNLLDAKNRFQQWALAEFSQNPEYIIIEESGPD 186 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 H FT V++ G+ G K+ A + AA E LK+ G+ Sbjct: 187 HAKEFTAQVKVQGIVYGVGRGRRKQEATKAAAEEALKKVGL 227 >gi|323526859|ref|YP_004229012.1| ribonuclease III [Burkholderia sp. CCGE1001] gi|323383861|gb|ADX55952.1| ribonuclease III [Burkholderia sp. CCGE1001] Length = 475 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/195 (34%), Positives = 102/195 (52%), Gaps = 7/195 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 4 SPLESRLRYEFRNAELLRQALTHRSHSSTHNE---RLEFLGDSVLNCAVAALLFQRFGKL 60 Query: 67 KEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD +E+++ A Sbjct: 61 DEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVLGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ++LDGG E A T + + + + +DAKT LQE+ P Y V G Sbjct: 120 VFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGA 179 Query: 184 DHDPRFTVVVEISGL 198 H+ +F V + L Sbjct: 180 AHNQQFEVECTVPKL 194 >gi|307730527|ref|YP_003907751.1| ribonuclease III [Burkholderia sp. CCGE1003] gi|307585062|gb|ADN58460.1| ribonuclease III [Burkholderia sp. CCGE1003] Length = 420 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/195 (34%), Positives = 102/195 (52%), Gaps = 7/195 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 4 SPLESRLRYEFRNAELLRQALTHRSHSSTHNE---RLEFLGDSVLNCAVAALLFQRFGKL 60 Query: 67 KEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD +E+++ A Sbjct: 61 DEGDLSRVRAN-LVKQQSLYELAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVLGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ++LDGG E A T + + + + +DAKT LQE+ P Y V G Sbjct: 120 VFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGA 179 Query: 184 DHDPRFTVVVEISGL 198 H+ +F V + L Sbjct: 180 AHNQQFEVECTVPKL 194 >gi|237740802|ref|ZP_04571283.1| ribonuclease III [Fusobacterium sp. 2_1_31] gi|229422819|gb|EEO37866.1| ribonuclease III [Fusobacterium sp. 2_1_31] Length = 234 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 103/191 (53%), Gaps = 6/191 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LE ++ Y F NR+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ ++ Sbjct: 7 LEHKLNYYFNNRNLLKTALLHKSLGNEKKEYKNQNNERLELLGDAVLDLIVAEYLYRNYK 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 SA EG ++ +VS ++++R++DL F+ +S SI AD E+++ Sbjct: 67 SASEGTIAKLKAMIVSEPILAKISRQIDLGKFLMLSKGEILSGGRNRESILADAFEAVLG 126 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+Y+D +E A +F + +Q ++ + D K+ LQE+ F P Y++ G Sbjct: 127 AVYMDSNLEEARSFALGHIEQYITHIEEDEDILDFKSILQEYVQKNFKTVPTYELISEKG 186 Query: 183 PDHDPRFTVVV 193 PDH F + V Sbjct: 187 PDHMKEFEIQV 197 >gi|56419727|ref|YP_147045.1| ribonuclease III [Geobacillus kaustophilus HTA426] gi|81347639|sp|Q5L0Q3|RNC_GEOKA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56379569|dbj|BAD75477.1| dsRNA-specific ribonuclease [Geobacillus kaustophilus HTA426] Length = 246 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 107/223 (47%), Gaps = 7/223 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L+ +IG F N LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 17 KFQELQNKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+L+ ++V + + A L + + ++ ADV E Sbjct: 77 QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 + I ALYLD G++ F++K + + G F D K++LQE T EY + Sbjct: 137 AFIGALYLDQGMDAVIRFLEKTMFPK-IDEGAFSHVMDFKSQLQELVQRDGSGTLEYAIL 195 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H+ F V ++G G+ SK+ AEQ AA L+ Sbjct: 196 EEKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALE 238 >gi|325127806|gb|EGC50714.1| ribonuclease III [Neisseria meningitidis N1568] Length = 239 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 116/220 (52%), Gaps = 8/220 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++KR+GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HAAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFADR-VRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 186 Query: 183 PDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 +D F V ++ L + S++AAEQ AA E L+ Sbjct: 187 HANDSMFVVSCDLGELGFVCRAKGTSRKAAEQSAAKEALQ 226 >gi|222444593|ref|ZP_03607108.1| hypothetical protein METSMIALI_00205 [Methanobrevibacter smithii DSM 2375] gi|261350869|ref|ZP_05976286.1| ribonuclease III [Methanobrevibacter smithii DSM 2374] gi|222434158|gb|EEE41323.1| hypothetical protein METSMIALI_00205 [Methanobrevibacter smithii DSM 2375] gi|288860206|gb|EFC92504.1| ribonuclease III [Methanobrevibacter smithii DSM 2374] Length = 223 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 103/206 (50%), Gaps = 3/206 (1%) Query: 19 NRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 +R L + A TH S H +YERLEFLGD +L +++S L+ + +EG+L+ Sbjct: 13 DRHLYDVAFTHGSYGTKHGLDYTYERLEFLGDSVLNMIVSEYLYKQYPDYEEGKLTKLRA 72 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + V + EL L I++ D K + + SI ADV ES + A++LD GIE A Sbjct: 73 NYVCQTALIYYSHELGLDKHIKIYGDDSKITENEVLSITADVFESFLGAIFLDQGIEFAK 132 Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 ++ K F D K+ ++E+ A+ V EYK+ G H+ F + + I Sbjct: 133 DYISKIIFPYIDAKKVFFFDYKSVIKEYGDAQ-EVDIEYKIIDECGVPHNKTFIISILID 191 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKR 222 G G +K+ AEQ A+ + +K+ Sbjct: 192 GKEMGVGKGKNKKEAEQAASKQAMKK 217 >gi|190575414|ref|YP_001973259.1| ribonuclease III [Stenotrophomonas maltophilia K279a] gi|190013336|emb|CAQ46970.1| putative ribonuclease III [Stenotrophomonas maltophilia K279a] Length = 226 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/214 (35%), Positives = 115/214 (53%), Gaps = 7/214 (3%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AF++ +LL++ALTH S + E RLEFLGD I+ ++ + L+ + A EG ++ Sbjct: 12 IGHAFSDPALLKQALTHRSAGAPHNE---RLEFLGDSIVNMMAAEALYRRWPKADEGAMT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + +AR L L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIARTLQLGERLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDAGF 128 Query: 133 EVAGTFVDKYWKQ--RALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 E V ++ AL SG+ +D KT LQEW A+ P+Y++ SG DH F Sbjct: 129 EACRAVVLPWFSASIEALPASGRPEKDPKTRLQEWLQARQKALPQYELVSESGDDHAKHF 188 Query: 190 TVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 V ++ A + +G S+R AEQ AAA VL++ Sbjct: 189 RVRCNVADPAASTEGEGASRRLAEQQAAAAVLEQ 222 >gi|118498035|ref|YP_899085.1| ribonuclease III [Francisella tularensis subsp. novicida U112] gi|194323260|ref|ZP_03057044.1| ribonuclease III [Francisella tularensis subsp. novicida FTE] gi|208779555|ref|ZP_03246900.1| ribonuclease III [Francisella novicida FTG] gi|254373391|ref|ZP_04988879.1| ribonuclease III [Francisella tularensis subsp. novicida GA99-3549] gi|189043316|sp|A0Q7W6|RNC_FRATN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|118423941|gb|ABK90331.1| ribonuclease III [Francisella novicida U112] gi|151571117|gb|EDN36771.1| ribonuclease III [Francisella novicida GA99-3549] gi|194322624|gb|EDX20104.1| ribonuclease III [Francisella tularensis subsp. novicida FTE] gi|208744516|gb|EDZ90815.1| ribonuclease III [Francisella novicida FTG] gi|332678757|gb|AEE87886.1| Ribonuclease III [Francisella cf. novicida Fx1] Length = 230 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 119/230 (51%), Gaps = 18/230 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS +GY F + +LL +ALTH S + +++YERLEFLGD +L +I+ +L+ F Sbjct: 5 YSRFYNILGYNFKDYTLLIRALTHRSKT---KKNYERLEFLGDSVLSFVIAEVLYKQFTD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T +Q+A L + +I + + + I DV E++I A Sbjct: 62 LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGAS--EQGGHKREKILEDVFEAVIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YLD + K W Q + S +D+K++LQE PEY + Sbjct: 120 IYLDSDFATVKKVILK-WYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 178 Query: 182 GPDHDPRFTVVV---EISGLAPAQGMDCSKRAAEQVAA---AEVLKREGI 225 G DH+ +FTVV +++ AQG S++ AEQ AA E+L ++G+ Sbjct: 179 GKDHEQQFTVVAMSKDLNLRVKAQG--TSRKKAEQKAAEKMIEMLSQQGL 226 >gi|295677176|ref|YP_003605700.1| ribonuclease III [Burkholderia sp. CCGE1002] gi|295437019|gb|ADG16189.1| ribonuclease III [Burkholderia sp. CCGE1002] Length = 426 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/198 (33%), Positives = 103/198 (52%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSPLESRLRYEFRNAELLRQALTHRSHSSTHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD +E++ Sbjct: 58 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAV 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A++LDGG + A T + + + + +DAKT LQE+ P Y V Sbjct: 117 LGAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|148642236|ref|YP_001272749.1| ribonuclease III (dsRNA-specific), Rnc [Methanobrevibacter smithii ATCC 35061] gi|148551253|gb|ABQ86381.1| ribonuclease III (dsRNA-specific), Rnc [Methanobrevibacter smithii ATCC 35061] Length = 223 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 103/206 (50%), Gaps = 3/206 (1%) Query: 19 NRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 +R L + A TH S H +YERLEFLGD +L +++S L+ + +EG+L+ Sbjct: 13 DRHLYDVAFTHGSYGTKHGLDYTYERLEFLGDSVLNMIVSEYLYKQYPDYEEGKLTKLRA 72 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + V + EL L I++ D K + + SI ADV ES + A++LD GIE A Sbjct: 73 NYVCQTALIYYSHELGLDKHIKIYGDDSKITENEVLSITADVFESFLGAIFLDQGIEFAK 132 Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 ++ K F D K+ ++E+ A+ V EYK+ G H+ F + + I Sbjct: 133 DYISKIIFPYIDAKKVFFFDYKSVIKEYGDAQ-EVDIEYKIIDECGVPHNKTFIISILID 191 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKR 222 G G +K+ AEQ A+ + +K+ Sbjct: 192 GKEMGVGKGKNKKEAEQAASKQAMKK 217 >gi|319892231|ref|YP_004149106.1| Ribonuclease III [Staphylococcus pseudintermedius HKU10-03] gi|317161927|gb|ADV05470.1| Ribonuclease III [Staphylococcus pseudintermedius HKU10-03] gi|323464672|gb|ADX76825.1| ribonuclease III [Staphylococcus pseudintermedius ED99] Length = 243 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 108/216 (50%), Gaps = 11/216 (5%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSA 66 K + + N SL ++A +HSS + + E ERLEFLGD +L L +S LF+ F Sbjct: 22 KALNLTYDNMSLYQQAFSHSSFINDFNMDRTEHNERLEFLGDAVLELTVSRYLFDAFPKL 81 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ ++V + A+ ++L I + K S+ ADV E+ + AL Sbjct: 82 PEGELTKMRANIVCEPSLVVFAQHINLMPLILLGKGEEKTGGRTRPSLVADVFEAFVGAL 141 Query: 127 YLDGGIEVAGTFVD----KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 YLD G+E F + + K R L D KT+ QE+ H + +Y+V G Sbjct: 142 YLDQGLEAVWQFAEAVIFPHVKGRQLIG---VVDFKTKFQEYVHQNYLGVIKYRVAKEEG 198 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 P H+ FT + ++G A ++G +K+ +EQ AA + Sbjct: 199 PAHNKTFTSEILLNGEAVSRGEGRTKKESEQKAAEQ 234 >gi|294787661|ref|ZP_06752905.1| ribonuclease III [Simonsiella muelleri ATCC 29453] gi|294483954|gb|EFG31637.1| ribonuclease III [Simonsiella muelleri ATCC 29453] Length = 235 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 114/223 (51%), Gaps = 14/223 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++ I + F N +L+++ALTH S S ++YERLEF+GD IL +++ +L+ F E Sbjct: 13 LQQEINFLFKNPNLIQQALTHRSYSS---QNYERLEFIGDSILNYVVAKMLYEAFPKLPE 69 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS LV T + +AR+L + + + K SI AD +E+L AA+ L Sbjct: 70 GRLSPLRAQLVKEATLADIARQLHIGDALFLGVGELKSGGHDRASILADALEALFAAISL 129 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D + + K + Q + L + + +DAKT LQE + P+Y++ ++G +D Sbjct: 130 DSDFATSEKIIRKIFSQKIKELDTSQSAKDAKTSLQELLQGQKLTLPKYRIDKQTGEGND 189 Query: 187 PRFTVVVEISGLAP---AQGMDCSKRAAEQVAAAEVLKREGIW 226 F V ++ L AQ S+R AEQ A + + +W Sbjct: 190 AIFDVSCDLGELGKIFYAQA--SSRRTAEQECAKQAI----VW 226 >gi|146281615|ref|YP_001171768.1| ribonuclease III [Pseudomonas stutzeri A1501] gi|145569820|gb|ABP78926.1| ribonuclease III [Pseudomonas stutzeri A1501] Length = 208 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/203 (37%), Positives = 104/203 (51%), Gaps = 6/203 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 ALTH S + + ERLEFLGD IL + LFNHF A+EG+LS LV ET + Sbjct: 4 ALTHRSYA---GRNNERLEFLGDAILNFVAGEALFNHFPQAREGQLSRLRARLVKGETLA 60 Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 +AR +L +R+ S K SI AD +E+LI A+YLD G++VA V + Sbjct: 61 VLARGFELGDHLRLGSGELKSGGYRRESILADTLEALIGAIYLDAGMDVARERVIAWLAN 120 Query: 146 --RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQ 202 + L +D KT LQE+ ++ P Y+V G H F V +++ L Sbjct: 121 ELQGLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEPHCRTFFVECQVALLNDKTH 180 Query: 203 GMDCSKRAAEQVAAAEVLKREGI 225 G S+R AEQVAAA L G+ Sbjct: 181 GQGASRRIAEQVAAAAALIALGV 203 >gi|326382852|ref|ZP_08204542.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395] gi|326198442|gb|EGD55626.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395] Length = 234 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/202 (35%), Positives = 108/202 (53%), Gaps = 8/202 (3%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S ++ + ERLEFLGD +LG++++ L+ F EGEL+ S+V Sbjct: 22 LLTLALTHRSYAYENGGLPTNERLEFLGDAVLGVVVTERLYVGFPDRPEGELAKIRASVV 81 Query: 80 SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + + VAR L L + +R+ SI AD +ESL A++LD GIEVA Sbjct: 82 NMHALADVARGLGEGGLGAHLRLGRGEELTGGRDKASILADGLESLFGAIFLDHGIEVAK 141 Query: 137 TFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 T + ++ ++SG+ D KT LQE + + P+Y+++ +GPDH+ FT V Sbjct: 142 TVIMNLFEPIIVRSGRLGAGLDWKTSLQELSAERSLGQPQYQIS-STGPDHNKEFTAVAV 200 Query: 195 ISGLAPAQGMDCSKRAAEQVAA 216 + G G +K+ AEQ AA Sbjct: 201 VGGDELGAGTGKTKKEAEQRAA 222 >gi|209517222|ref|ZP_03266067.1| Ribonuclease III [Burkholderia sp. H160] gi|209502358|gb|EEA02369.1| Ribonuclease III [Burkholderia sp. H160] Length = 423 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/198 (33%), Positives = 103/198 (52%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSPLESRLRYEFRNAELLRQALTHRSHSSTHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD +E++ Sbjct: 58 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAV 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A++LDGG + A T + + + + +DAKT LQE+ P Y V Sbjct: 117 LGAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|187924875|ref|YP_001896517.1| ribonuclease III [Burkholderia phytofirmans PsJN] gi|187716069|gb|ACD17293.1| Ribonuclease III [Burkholderia phytofirmans PsJN] Length = 418 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/198 (33%), Positives = 103/198 (52%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSPLESRLRYEFRNAELLRQALTHRSHSSTHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD +E++ Sbjct: 58 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAV 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A++LDGG + A T + + + + +DAKT LQE+ P Y V Sbjct: 117 LGAVFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|288817568|ref|YP_003431915.1| ribonuclease III [Hydrogenobacter thermophilus TK-6] gi|288786967|dbj|BAI68714.1| ribonuclease III [Hydrogenobacter thermophilus TK-6] gi|308751168|gb|ADO44651.1| ribonuclease III [Hydrogenobacter thermophilus TK-6] Length = 232 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 115/215 (53%), Gaps = 11/215 (5%) Query: 14 GYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 GY F ++ LLE+ALTH S + +SYE LEFLGD ++ L + +L F AKEG+L+ Sbjct: 17 GYTFRDKKLLEQALTHKSYAVEKGVKSYETLEFLGDALINLFVVDILLQEFPQAKEGQLA 76 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 VS E Q+A+EL+L ++ + +K SI D ESL A+Y+D G Sbjct: 77 PMKAFFVSEEFLHQLAQELELEKYLLLGG--KKGKFKVNVSILGDAFESLWGAIYIDTGR 134 Query: 133 EVAGT--FVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 + T ++ +K R + +S +++D KT LQE ++ P Y+V SGP H Sbjct: 135 DTNFTRSLFERLYKNRIITMARSSDYKKDYKTILQEITQKRWKERPTYRVVSVSGPQHGK 194 Query: 188 RFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 F V + + A A G +K+ AEQ++A VL+ Sbjct: 195 VFEVECSVRNIRAVAAG--SNKKEAEQLSAKRVLE 227 >gi|170781177|ref|YP_001709509.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus] gi|169155745|emb|CAQ00866.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus] Length = 238 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/205 (37%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LLE ALTH S + H ERLEFLGD ILG ++ +L+ EGEL+ R SLV Sbjct: 28 LLELALTHRSYAYEHGGIPHNERLEFLGDSILGQAVTVMLYLENPDLDEGELAKRRASLV 87 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S+ ++VA + L + + +SI AD VE++I A YLD G E A V Sbjct: 88 SSVALAEVATRIGLGEHLLLGRGEELTGGRAKSSILADTVEAIIGASYLDAGGEAATGLV 147 Query: 140 DKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + +F D KT LQE A + P Y V+ SGPDH RF VV + Sbjct: 148 LRLIAPLLEDPARFGAAMDPKTALQESAARQGLPAPAYDVS-DSGPDHSKRFHAVVTVGD 206 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKR 222 G SK+ AE AA E R Sbjct: 207 AVRTTGEGSSKKQAEMTAALEAWTR 231 >gi|238026617|ref|YP_002910848.1| ribonuclease III [Burkholderia glumae BGR1] gi|237875811|gb|ACR28144.1| Ribonuclease III [Burkholderia glumae BGR1] Length = 427 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MSQSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L++A +R+ + SI AD E++ Sbjct: 58 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNIADGLRLGEGELRSGGFRRPSILADAFEAI 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|170695422|ref|ZP_02886567.1| Ribonuclease III [Burkholderia graminis C4D1M] gi|170139613|gb|EDT07796.1| Ribonuclease III [Burkholderia graminis C4D1M] Length = 421 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 102/195 (52%), Gaps = 7/195 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 4 SPLESRLRYEFRNAELLRQALTHRSHSSTHNE---RLEFLGDSVLNCAVAALLFQRFGKL 60 Query: 67 KEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD +E+++ A Sbjct: 61 DEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVLGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ++LDGG + A T + + + + +DAKT LQE+ P Y V G Sbjct: 120 VFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGA 179 Query: 184 DHDPRFTVVVEISGL 198 H+ +F V + L Sbjct: 180 AHNQQFEVECTVPKL 194 >gi|258592173|emb|CBE68482.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [NC10 bacterium 'Dutch sediment'] Length = 246 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 109/219 (49%), Gaps = 7/219 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62 ST G+ F N +LLE ALTH S + Q Y+RLEFLGD + L +S L + Sbjct: 11 STPNTLYGHRFRNSTLLEAALTHPSSTDPSQADVRLRYQRLEFLGDAVWSLYVSDALVSL 70 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 +A EGEL+ R LVSA + +A+ LA + +S T + + E++ Sbjct: 71 LPTASEGELTQRRAGLVSATALADMAQLHGLAPLLLLSKGEELTGGRLKTRVLSSSFEAV 130 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I A+YLDGG+E + L+ D KT LQ A + TP Y++ RSG Sbjct: 131 IGAIYLDGGLEAIRDLAREACVN-TLEGEHVTLDPKTALQHLAQSLLHATPRYRLIRRSG 189 Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220 H P F V V I G +P A+G +++ AE+ AA + L Sbjct: 190 APHAPTFEVEV-IVGQSPIAKGKGRNRQEAERAAAQDAL 227 >gi|317154737|ref|YP_004122785.1| ribonuclease III [Desulfovibrio aespoeensis Aspo-2] gi|316944988|gb|ADU64039.1| ribonuclease III [Desulfovibrio aespoeensis Aspo-2] Length = 230 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/215 (34%), Positives = 109/215 (50%), Gaps = 10/215 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSA 66 L++RI + F L+E ALTHSS ++ + ERLEFLGD +L L IS + F A Sbjct: 6 LQQRIHHRFGQVKLMEAALTHSSHANEQEGDGDNERLEFLGDAVLELCISEEGYRRFPHA 65 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ + LV ++ + +AR LDL I + ++ AD E+L+ A+ Sbjct: 66 PEGQLTRIRSQLVKEKSLAAIARSLDLHRHILLGKGEELQGGRDRDALLADAFEALMGAV 125 Query: 127 YLDGGIEVA-----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +LDGG A F DK+ + L K D K+ LQE A +F P Y + S Sbjct: 126 FLDGGFAAARKSILHIFGDKWPEAEMLPETK---DYKSRLQEVAQERFRDRPVYVLAGTS 182 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GP+H+ F V + A +G+ S + AEQ AA Sbjct: 183 GPEHEKVFMVDATLPTGACFRGVSSSVKRAEQEAA 217 >gi|223932807|ref|ZP_03624804.1| Ribonuclease III [Streptococcus suis 89/1591] gi|302023944|ref|ZP_07249155.1| ribonuclease III [Streptococcus suis 05HAS68] gi|330832996|ref|YP_004401821.1| ribonuclease III [Streptococcus suis ST3] gi|223898516|gb|EEF64880.1| Ribonuclease III [Streptococcus suis 89/1591] gi|329307219|gb|AEB81635.1| ribonuclease III [Streptococcus suis ST3] Length = 228 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 104/218 (47%), Gaps = 7/218 (3%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 G F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS L+ + E Sbjct: 12 FGIDFSDLNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLMISKYLYQKYPDRPE 71 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GE+S ++ V E+ + +R F+R+ K +I D E+ + AL L Sbjct: 72 GEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILGDAFEAFLGALLL 131 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G + F+ K R L+ G F R D KT LQE + Y+V SGP HD Sbjct: 132 DKGEKTVEEFIHKVMIPR-LEKGNFERVTDYKTALQEILQVNGEIAISYQVIAESGPAHD 190 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F V V +G SK+ AEQ AA ++ G Sbjct: 191 KTFEVEVSADRRVIGRGRGRSKKLAEQAAAKNAVEARG 228 >gi|313124070|ref|YP_004034329.1| ribonuclease iii [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280633|gb|ADQ61352.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 231 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 112/222 (50%), Gaps = 15/222 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L+++ G F + LLE+A THSS + +YE+LEFLGD +L +S L+ HF Sbjct: 10 LDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTVSDYLYRHFQ 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ +++V E S+VA + I++ K ++ DV E+ Sbjct: 70 HLNEGELTRLRSNIVRTEGFSKVALDCGFKKEIKLGVGEEKAGGRKRKALLEDVFEAFNG 129 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA---LKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTF 179 AL+LD GIE V+K+ +Q + +G F RD KT+LQE VT EY+V Sbjct: 130 ALFLDQGIEA----VEKFLRQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVLN 185 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 S P F V V + G A G +K+ AEQ AA+ L+ Sbjct: 186 ES--QQPPHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALE 225 >gi|311029996|ref|ZP_07708086.1| ribonuclease III [Bacillus sp. m3-13] Length = 247 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + L++++G F N LL +A THSS + ++ E ERLEFLGD +L L IS L+ Sbjct: 20 FVMLQEKLGVKFHNEKLLYQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTISQFLYK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG+L+ S+V + A +L ++ + ++ ADV E+ Sbjct: 80 KYPMMSEGQLTKLRASIVCEPSLVSFANDLSFGQYVLLGKGEEITGGRARPALLADVFEA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G+E F++KY + + G F D K++LQE EY+V Sbjct: 140 FIGALYLDLGLETVFQFLEKYVYPK-INEGAFSHVMDFKSQLQEMIQRNALGVIEYEVLE 198 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++ G+ SK+ AEQ AA L++ Sbjct: 199 EKGPAHNREFVSKVSLNKEEMGIGVGRSKKEAEQHAAQFALQK 241 >gi|186475606|ref|YP_001857076.1| ribonuclease III [Burkholderia phymatum STM815] gi|184192065|gb|ACC70030.1| Ribonuclease III [Burkholderia phymatum STM815] Length = 441 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/198 (33%), Positives = 103/198 (52%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 9 MPLSPLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 65 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD +E++ Sbjct: 66 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAI 124 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A++LDGG + A T + + + + +DAKT LQE+ P Y V Sbjct: 125 LGAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIPLPTYTVVAT 184 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 185 HGAAHNQQFEVECTVPKL 202 >gi|296113914|ref|YP_003627852.1| ribonuclease III [Moraxella catarrhalis RH4] gi|295921608|gb|ADG61959.1| ribonuclease III [Moraxella catarrhalis RH4] Length = 266 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 10/224 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L ++GY F + SLL +ALTH S + ++SYERLEFLGD +L +I+ LF + Sbjct: 37 PVLYAKLGYTFKDVSLLCRALTHRS--YDPKKSYERLEFLGDALLSSIITKALFAQYPKH 94 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ +LV ET Q+A L+L+ + + RK SI AD VE+LIAA+ Sbjct: 95 DEGKLTRMRAALVRQETLVQIADHLELSRHLILGVGERKGGGRHRASILADAVEALIAAV 154 Query: 127 YLDG----GIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKV--T 178 YLD G + V ++K + G+ + +DAK+ LQE P Y++ T Sbjct: 155 YLDNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQT 214 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 S P+ + G+ P S+R AEQ A ++ + Sbjct: 215 LGSAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQ 258 >gi|149200057|ref|ZP_01877082.1| ribonuclease III [Lentisphaera araneosa HTCC2155] gi|149136815|gb|EDM25243.1| ribonuclease III [Lentisphaera araneosa HTCC2155] Length = 232 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 114/225 (50%), Gaps = 9/225 (4%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLL 59 ++ + LE + F +LL +ALTH S +E +RLEFLGD ++ L++S L Sbjct: 2 SISFKVLEDNLKCKFNQPTLLREALTHRSYKFESKEPLNDNQRLEFLGDAVIELIVSRYL 61 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F+ + A EG+L+ +LV + A+ + L ++ + K + S +D Sbjct: 62 FDRYPDAPEGDLTKYRAALVKESALFECAKSIKLGKYLLLGKSELKSQGNERPSNLSDAY 121 Query: 120 ESLIAALYLDGGIEVAGTF----VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 E+L+AA+YLD G E A +F ++K W + A ++ K LQE G P+Y Sbjct: 122 EALMAAIYLDQGYETAQSFHINILEKLWDEPA--DLLLVQNPKGTLQELTQKNHGSPPKY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 ++GP+HDP + V ++ ++G + +AA++ AA + + Sbjct: 180 ITISKTGPEHDPLYKVECILNKELISKGQGKTLKAAQENAARKAI 224 >gi|254245911|ref|ZP_04939232.1| Ribonuclease III [Burkholderia cenocepacia PC184] gi|124870687|gb|EAY62403.1| Ribonuclease III [Burkholderia cenocepacia PC184] Length = 350 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/195 (34%), Positives = 100/195 (51%), Gaps = 7/195 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 22 SQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFGKL 78 Query: 67 KEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++I A Sbjct: 79 DEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGA 137 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ++LDGG E A + + + + +DAKT LQE+ P Y V G Sbjct: 138 VFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGA 197 Query: 184 DHDPRFTVVVEISGL 198 H+ +F V + L Sbjct: 198 AHNQQFEVECTVPKL 212 >gi|322389960|ref|ZP_08063500.1| ribonuclease III [Streptococcus parasanguinis ATCC 903] gi|321143396|gb|EFX38834.1| ribonuclease III [Streptococcus parasanguinis ATCC 903] Length = 242 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 111/216 (51%), Gaps = 7/216 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L +R F++ SLL+ A TH+S ++ ++ ERLEFLGD +L L+IS L+ Sbjct: 15 TLLSERFQIVFSDSSLLDTAFTHTSYANEHRLLKISHNERLEFLGDAVLQLVISEYLYKE 74 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS + +V E+ + +R+ +I++ K +I D+ E+ Sbjct: 75 HPNRPEGDLSKFRSMIVREESLAGFSRDCQFDHYIKLGKGEEKSGGRDRDTILGDLFEAF 134 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + AL LD G+E F+ + + +++G+F + D KT LQE V +Y+V Sbjct: 135 LGALLLDQGVEAVKRFIYQVMIPK-VETGQFSQVIDYKTRLQELLQVHGDVEIQYQVVSE 193 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 SGP H F V V ++G G SK+ AEQ AA Sbjct: 194 SGPAHAKEFEVEVFVNGKTLGHGHGRSKKLAEQEAA 229 >gi|221214088|ref|ZP_03587061.1| ribonuclease III [Burkholderia multivorans CGD1] gi|221166265|gb|EED98738.1| ribonuclease III [Burkholderia multivorans CGD1] Length = 402 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 58 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAI 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|332685822|ref|YP_004455596.1| ribonuclease III [Melissococcus plutonius ATCC 35311] gi|332369831|dbj|BAK20787.1| ribonuclease III [Melissococcus plutonius ATCC 35311] Length = 230 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 111/219 (50%), Gaps = 7/219 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI--SHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 L++R G F + +LLE+A THSS H Y + ER+EFLGD +L L+IS L+ + Sbjct: 9 LKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERIEFLGDAVLELIISQYLYQKYQ 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+L+ ++V ++ ++ A+E +I + + +++ D+ E+ + Sbjct: 69 NLPEGKLTKMRAAIVREDSLAKFAKECQFDQYILLGNGEENSGGRERSALLCDLFEAFLG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD GIE F+ + + ++ G F D KT LQE K V +Y++ G Sbjct: 129 ALYLDQGIETVKYFISEIIFPK-IEEGNFSHEVDHKTHLQEVLQHKGDVNIDYRLVDEKG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P HD F + +G SK+ AEQ AA LK Sbjct: 188 PAHDRIFYTEIYADEKLIGRGHGRSKKLAEQDAAERALK 226 >gi|37929739|gb|AAP70361.1| ribonuclease III [Ehrlichia ruminantium] Length = 156 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 84/146 (57%) Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +LV +VA+ ++L +FI +S R + +S + +E+LI A+YLDGG++ A Sbjct: 5 ALVCGTKLVEVAQSINLGTFIIMSDGERTCGGANNSSNLENALEALIGAIYLDGGLKAAK 64 Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 F+ +WK A +DAKT LQEWA +K + P Y + +SGPDH+P FTV V + Sbjct: 65 NFIFLFWKNSAKHMKVPPQDAKTILQEWAQSKGLLAPSYHIVNKSGPDHNPIFTVEVRMH 124 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKR 222 Q +K+ AEQ AA+ +L++ Sbjct: 125 SYETLQATGNNKKIAEQKAASLMLEK 150 >gi|308388873|gb|ADO31193.1| putative ribonuclease III [Neisseria meningitidis alpha710] Length = 267 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 116/220 (52%), Gaps = 8/220 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++KR+GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 39 HAAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPK 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 96 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 156 VSFDADFNTAEKVVRHLFADR-VRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 214 Query: 183 PDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 +D F + ++ L + S++AAEQ AA E L+ Sbjct: 215 HANDSMFVISCDLGELGFVCRAKGTSRKAAEQSAAKEALQ 254 >gi|156501954|ref|YP_001428019.1| ribonuclease III [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954597|ref|ZP_06559218.1| ribonuclease III [Francisella tularensis subsp. holarctica URFT1] gi|295311940|ref|ZP_06802764.1| ribonuclease III [Francisella tularensis subsp. holarctica URFT1] gi|189043315|sp|A7NAR0|RNC_FRATF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|156252557|gb|ABU61063.1| ribonuclease III [Francisella tularensis subsp. holarctica FTNF002-00] Length = 230 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 119/230 (51%), Gaps = 18/230 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS +GY F + +LL +ALTH S + +++YERLEFLGD +L +I+ +L+ F Sbjct: 5 YSRFYNILGYNFKDYTLLIRALTHRSKT---KKNYERLEFLGDSVLSFVIAEVLYKQFTD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T +Q+A L + +I + + + + I DV E++I A Sbjct: 62 LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGAS--EQGGNKREKILEDVFEAVIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YLD + K W Q + S +D+K++LQE PEY + Sbjct: 120 IYLDSDFATVKKVILK-WYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 178 Query: 182 GPDHDPRFTVVV---EISGLAPAQGMDCSKRAAEQVAA---AEVLKREGI 225 G DH+ +FTVV +++ AQG S++ AEQ A E+L ++G+ Sbjct: 179 GKDHEQQFTVVAVSKDLNLRVKAQG--TSRKKAEQKTAEKMIEMLSQQGL 226 >gi|295399780|ref|ZP_06809761.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93] gi|312111708|ref|YP_003990024.1| ribonuclease III [Geobacillus sp. Y4.1MC1] gi|294978183|gb|EFG53780.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93] gi|311216809|gb|ADP75413.1| ribonuclease III [Geobacillus sp. Y4.1MC1] Length = 246 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 107/224 (47%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L+K+IG F N LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 17 KFKELQKKIGIFFTNEKLLIQAFTHSSYVNEHRKRPHEDNERLEFLGDAVLELTVSQYLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EGEL+ ++V + + A L + + ++ ADV E Sbjct: 77 KKFPHMSEGELTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 + I ALYLD G++ F+ + + + G F D K++LQE EY + Sbjct: 137 AFIGALYLDKGMDAVMQFLGQTIFPK-IDEGAFSHVMDFKSQLQELVQRDGIGVLEYSIL 195 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++G G+ SK+ AEQ AA L++ Sbjct: 196 EEKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAAQMALQK 239 >gi|254374854|ref|ZP_04990335.1| ribonuclease III [Francisella novicida GA99-3548] gi|151572573|gb|EDN38227.1| ribonuclease III [Francisella novicida GA99-3548] Length = 230 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 119/230 (51%), Gaps = 18/230 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS +GY F + +LL +ALTH S + +++YERLEFLGD +L +I+ +L+ F Sbjct: 5 YSRFYNILGYNFKDYTLLIRALTHRSKT---KKNYERLEFLGDSVLSFVIAEVLYKQFTD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T +Q+A L + +I + + + I DV E++I A Sbjct: 62 LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGAS--EQGGHKREKILEDVFEAVIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YLD + K W Q + S +D+K++LQE PEY + Sbjct: 120 IYLDSDFATVKKVILK-WYQPIILSINLDTIKVKDSKSKLQEILLQNALSLPEYSIEAID 178 Query: 182 GPDHDPRFTVVV---EISGLAPAQGMDCSKRAAEQVAA---AEVLKREGI 225 G DH+ +FTVV +++ AQG S++ AEQ AA E+L ++G+ Sbjct: 179 GKDHEQQFTVVAMSKDLNLRVKAQG--TSRKKAEQKAAEKMIEMLSQQGL 226 >gi|326560591|gb|EGE10972.1| ribonuclease III [Moraxella catarrhalis 103P14B1] gi|326565582|gb|EGE15745.1| ribonuclease III [Moraxella catarrhalis 12P80B1] gi|326572025|gb|EGE22027.1| ribonuclease III [Moraxella catarrhalis BC8] gi|326573972|gb|EGE23922.1| ribonuclease III [Moraxella catarrhalis O35E] gi|326574964|gb|EGE24894.1| ribonuclease III [Moraxella catarrhalis 101P30B1] Length = 262 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 10/224 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L ++GY F + SLL +ALTH S + ++SYERLEFLGD +L +I+ LF + Sbjct: 33 PVLYAKLGYTFKDVSLLCRALTHRS--YDPKKSYERLEFLGDALLSSIITKALFAQYPKH 90 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ +LV ET Q+A L+L+ + + RK SI AD VE+LIAA+ Sbjct: 91 DEGKLTRMRAALVRQETLVQIADHLELSRHLILGVGERKGGGRHRASILADAVEALIAAV 150 Query: 127 YLDG----GIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKV--T 178 YLD G + V ++K + G+ + +DAK+ LQE P Y++ T Sbjct: 151 YLDNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQT 210 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 S P+ + G+ P S+R AEQ A ++ + Sbjct: 211 LGSAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQ 254 >gi|184155714|ref|YP_001844054.1| ribonuclease III [Lactobacillus fermentum IFO 3956] gi|227515694|ref|ZP_03945743.1| ribonuclease III [Lactobacillus fermentum ATCC 14931] gi|238692982|sp|B2GD42|RNC_LACF3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|183227058|dbj|BAG27574.1| ribonuclease III [Lactobacillus fermentum IFO 3956] gi|227085942|gb|EEI21254.1| ribonuclease III [Lactobacillus fermentum ATCC 14931] gi|299783404|gb|ADJ41402.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus fermentum CECT 5716] Length = 232 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 105/220 (47%), Gaps = 7/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L K G F N +LL +A T +S H + YER+EFLGD +L L +S ++ + Sbjct: 9 LAKTYGIHFNNPALLAEAFTQASYVNEHPHENLKYYERIEFLGDAVLQLFVSEYIYRRYP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G+L+ ++V ++ S+ A+E +IR+ S+ D+ ES I Sbjct: 69 ELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRASLLCDIFESFIG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G + F+ + L G F DAKT LQE+ V EY + G Sbjct: 129 ALYLDQGRQAVEQFIQTVIFPK-LDLGWFDHAVDAKTSLQEFLQRNGDVAIEYDLLSEGG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 ++DP F V V + G A G SK+ AE AA L++ Sbjct: 188 TENDPVFEVEVTVDGKKVATGQGSSKKHAEMEAAKHALEK 227 >gi|254252845|ref|ZP_04946163.1| Ribonuclease III [Burkholderia dolosa AUO158] gi|124895454|gb|EAY69334.1| Ribonuclease III [Burkholderia dolosa AUO158] Length = 377 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/195 (35%), Positives = 100/195 (51%), Gaps = 7/195 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 4 SQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFGKL 60 Query: 67 KEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS VR N LV ++ ++A+ L++A +R+ + SI AD E++I A Sbjct: 61 DEGDLSRVRAN-LVKQQSLYEIAQALNIADGLRLGEGELRSGGFRRPSILADAFEAIIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ++LDGG E A + + + + +DAKT LQE+ P Y V G Sbjct: 120 VFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATLGA 179 Query: 184 DHDPRFTVVVEISGL 198 H+ +F V + L Sbjct: 180 AHNQQFEVECTVPKL 194 >gi|239826585|ref|YP_002949209.1| ribonuclease III [Geobacillus sp. WCH70] gi|259491901|sp|C5D8T6|RNC_GEOSW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|239806878|gb|ACS23943.1| ribonuclease III [Geobacillus sp. WCH70] Length = 246 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 107/224 (47%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L+K+IG F N LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 17 KFKELQKKIGIFFTNEKLLIQAFTHSSYVNEHRRRPHEDNERLEFLGDAVLELTVSQYLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EGEL+ ++V + + A L + + ++ ADV E Sbjct: 77 KKFPHMSEGELTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 + I ALYLD G++ F+ + + + G F D K++LQE EY + Sbjct: 137 AFIGALYLDQGMDAVMQFLGQTIFPK-IDEGAFSHVMDFKSQLQELVQRDGIGVLEYSIL 195 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++G G+ SK+ AEQ AA L++ Sbjct: 196 EEKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAAQMALQK 239 >gi|148272538|ref|YP_001222099.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830468|emb|CAN01403.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 238 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/205 (37%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LLE ALTH S + H ERLEFLGD ILG ++ +L+ EGEL+ R SLV Sbjct: 28 LLELALTHRSYAYEHGGIPHNERLEFLGDSILGQAVTVMLYLENPDLDEGELAKRRASLV 87 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S+ ++VA + L + + +SI AD VE++I A YLD G E A V Sbjct: 88 SSVALAEVATRIGLGEHLLLGRGEELTGGRAKSSILADTVEAIIGASYLDAGGEAATGLV 147 Query: 140 DKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + +F D KT LQE A + P Y V+ SGPDH RF VV + Sbjct: 148 LRLIAPLLEDPARFGAAMDPKTALQESAARQGLPAPVYDVS-DSGPDHSKRFHAVVTVGD 206 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKR 222 G SK+ AE AA E R Sbjct: 207 AVRTTGEGSSKKQAEMTAALEAWTR 231 >gi|221201351|ref|ZP_03574390.1| ribonuclease III [Burkholderia multivorans CGD2M] gi|221208831|ref|ZP_03581829.1| ribonuclease III [Burkholderia multivorans CGD2] gi|221171287|gb|EEE03736.1| ribonuclease III [Burkholderia multivorans CGD2] gi|221178619|gb|EEE11027.1| ribonuclease III [Burkholderia multivorans CGD2M] Length = 406 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 58 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAI 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|167041438|gb|ABZ06190.1| putative RNase3 domain protein [uncultured marine microorganism HF4000_006O13] gi|167041995|gb|ABZ06732.1| putative RNase3 domain protein [uncultured marine microorganism HF4000_141E02] Length = 224 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 110/215 (51%), Gaps = 7/215 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E+R Y F + LL+ ALTH S HS ++ ERLEFLGD L L+IS LL+ + EG Sbjct: 9 EQRFHYRFKDDILLQTALTHRS--HSV-DNNERLEFLGDAALDLVISELLYQSYSEQTEG 65 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 LS +SLV T +++A+ELD+ ++ + S+ +D +E++I A++LD Sbjct: 66 YLSRMRSSLVKGNTLAELAKELDVGGYLILGKGENTSGGRERLSLLSDTLEAMIGAIFLD 125 Query: 130 GGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG + K + R AL +D K+ LQE P Y + RS DH+ Sbjct: 126 GGYVAVKNVIIKIFDSRIQALDPKSEHKDHKSVLQEKLQGVKQGLPVYSLV-RSVGDHNK 184 Query: 188 RFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V I SG Q + R AEQ AA++ L+ Sbjct: 185 TFVVECSIKSGEIVTQASGKTLRVAEQKAASKALQ 219 >gi|168698810|ref|ZP_02731087.1| ribonuclease III [Gemmata obscuriglobus UQM 2246] Length = 215 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/201 (31%), Positives = 108/201 (53%), Gaps = 3/201 (1%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL ALTH+S +++ S ERLEFLGD +LGL+ L+ F +EG+L+ +++VS Sbjct: 3 LLRSALTHTSSANTRAASNERLEFLGDSVLGLVTCEQLYRRFPEYQEGDLTKVKSAVVSR 62 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 +TC++ ++E+ L F+ + + + +I A+ ESL+AA++LDGG + A FV Sbjct: 63 KTCARFSQEIRLGDFLFLGRGVNSN-GEMPLNILANAFESLVAAVFLDGGWDAARDFVLD 121 Query: 142 YWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 + + + +AK++LQ ++G TP Y + GPD++ F V ++ Sbjct: 122 FIDPEVDRVARDAISANAKSQLQTVTQREYGDTPRYFLLDEQGPDNNKCFKVAAQVHDER 181 Query: 200 PAQGMDCSKRAAEQVAAAEVL 220 +K+ AE AA L Sbjct: 182 FPAAWGHTKKEAELKAAMNAL 202 >gi|193211801|ref|YP_001997754.1| Ribonuclease III [Chlorobaculum parvum NCIB 8327] gi|193085278|gb|ACF10554.1| Ribonuclease III [Chlorobaculum parvum NCIB 8327] Length = 276 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 118/234 (50%), Gaps = 16/234 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLL 54 ++A S LE G + R + ALTH S+ H +Q ES +RLEFLGD +L LL Sbjct: 34 LAAATLSHLEHLTGRPCSRRQIYRIALTHRSLLHDHQGESERPESNQRLEFLGDAVLDLL 93 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV--SSDLRKDVCSFMT 112 IS LF + + EG LS +V+ + + AREL L + + S++L+K S Sbjct: 94 ISEHLFRLYPESDEGHLSSNRAKIVNRKALAAFARELKLGEHLIIGESANLQKIRTS--D 151 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAK 168 S AD E+L+ A+YLD G++ A F+ + + +F + K+ L E++ + Sbjct: 152 SALADAFEALVGAIYLDQGLDGAKRFIMNHVITMVDLNRIVEAEF--NYKSRLIEFSQSH 209 Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P Y V G +H+ F + V + + +G K+ AEQ+AA E +KR Sbjct: 210 QLPQPVYTVVAEEGAEHEKTFVIEVSCNDIPLGKGTAPRKKDAEQLAAREAMKR 263 >gi|308068621|ref|YP_003870226.1| ribonuclease III [Paenibacillus polymyxa E681] gi|310641509|ref|YP_003946267.1| ribonuclease iii [Paenibacillus polymyxa SC2] gi|305857900|gb|ADM69688.1| Ribonuclease III (RNase III) [Paenibacillus polymyxa E681] gi|309246459|gb|ADO56026.1| Ribonuclease III [Paenibacillus polymyxa SC2] Length = 232 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 116/220 (52%), Gaps = 7/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFD 64 L++++ F NR LL++A TH+S + ++ S ERLEFLGD +L L +S L+N + Sbjct: 8 LQQKLHIQFNNRQLLKQAFTHASYVNEHRFSQHADNERLEFLGDAVLELTVSEQLYNQYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGEL+ ++V + + A L+ ++ + ++ ADV E+ + Sbjct: 68 NRPEGELTKLRAAIVCEPSLVKFAVGLEFGQYVLLGKGEELTGGRTRPALLADVFEAFVG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWA-HAKFGVTPEYKVTFRSG 182 ALYLD G+E +F+++Y + + +GK + D KTELQE H G+ EYK+ G Sbjct: 128 ALYLDQGLEAVRSFLERYIFPQIVLNGKLQMSDFKTELQELTQHHNMGML-EYKIVEERG 186 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P H+ F V + G SK+ AEQ AAA L R Sbjct: 187 PAHEREFVAEVYMDSERLGAGTGRSKKEAEQQAAAVALNR 226 >gi|170732444|ref|YP_001764391.1| ribonuclease III [Burkholderia cenocepacia MC0-3] gi|169815686|gb|ACA90269.1| Ribonuclease III [Burkholderia cenocepacia MC0-3] Length = 409 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/195 (34%), Positives = 100/195 (51%), Gaps = 7/195 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 4 SQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFGKL 60 Query: 67 KEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++I A Sbjct: 61 DEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ++LDGG E A + + + + +DAKT LQE+ P Y V G Sbjct: 120 VFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGA 179 Query: 184 DHDPRFTVVVEISGL 198 H+ +F V + L Sbjct: 180 AHNQQFEVECTVPKL 194 >gi|260663569|ref|ZP_05864459.1| ribonuclease III [Lactobacillus fermentum 28-3-CHN] gi|260552110|gb|EEX25163.1| ribonuclease III [Lactobacillus fermentum 28-3-CHN] Length = 232 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 105/220 (47%), Gaps = 7/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L K G F N +LL +A T +S H + YER+EFLGD +L L +S ++ + Sbjct: 9 LAKTYGIHFNNPALLAEAFTQASYVNEHPHENLKYYERIEFLGDAVLQLFVSEYIYRRYP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G+L+ ++V ++ S+ A+E +IR+ S+ D+ ES I Sbjct: 69 ELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRASLLCDIFESFIG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G + F+ + L G F DAKT LQE+ V EY + G Sbjct: 129 ALYLDQGRQAVEQFIQTVIFPK-LDLGWFDHAVDAKTSLQEFLQRNGDVAIEYDLLSEGG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 ++DP F V V + G A G SK+ AE AA L++ Sbjct: 188 TENDPVFEVEVTVDGKKVATGQGSSKKHAEMDAAKHALEK 227 >gi|239617283|ref|YP_002940605.1| ribonuclease III [Kosmotoga olearia TBF 19.5.1] gi|239506114|gb|ACR79601.1| ribonuclease III [Kosmotoga olearia TBF 19.5.1] Length = 249 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/201 (35%), Positives = 103/201 (51%), Gaps = 11/201 (5%) Query: 25 KALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 KAL HSS ++ ES ERLEFLGD +L L ++ LL+ +D EG +S + Sbjct: 26 KALCHSSYANEVVRKGMNVESNERLEFLGDAVLALSLADLLYREYD-VDEGVMSKTRAVV 84 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 S + ++VAR +++ ++ + K SI AD E+++ ALYL G E+A F Sbjct: 85 ASEKVLAEVARNMNIGEYLLLGKGELKTGGRGRDSILADAFEAILGALYLSEGFEIARNF 144 Query: 139 VDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 V + + ++AL + D KT LQE GV PEY G + F V V + Sbjct: 145 VKEKLGIYIEKALNK-ELVLDYKTTLQELTQGNLGVRPEYSYIENIGTPQNKLFHVEVRV 203 Query: 196 SGLAPAQGMDCSKRAAEQVAA 216 +G A A G +K+AAEQ AA Sbjct: 204 NGKALAVGYGKTKKAAEQDAA 224 >gi|161525340|ref|YP_001580352.1| ribonuclease III [Burkholderia multivorans ATCC 17616] gi|189349923|ref|YP_001945551.1| ribonuclease III [Burkholderia multivorans ATCC 17616] gi|160342769|gb|ABX15855.1| Ribonuclease III [Burkholderia multivorans ATCC 17616] gi|189333945|dbj|BAG43015.1| ribonuclease III [Burkholderia multivorans ATCC 17616] Length = 406 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 58 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAI 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|328466160|gb|EGF37317.1| ribonuclease III [Listeria monocytogenes 1816] Length = 222 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 110/216 (50%), Gaps = 7/216 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 S I ALYLD GI+ TF+++ + + +G + + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPK-IDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 +GP H+ F V ++G +G K +V Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRQKNKQNKV 217 >gi|297539125|ref|YP_003674894.1| ribonuclease III [Methylotenera sp. 301] gi|297258472|gb|ADI30317.1| ribonuclease III [Methylotenera sp. 301] Length = 231 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 94/185 (50%), Gaps = 5/185 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L KR+ Y F +++LL +ALTH S + ++ ERLE+LGD L +I+ L+ F S E Sbjct: 6 LSKRLSYKFVDKNLLTQALTHRSYA---SQNNERLEYLGDGALNFIIANQLYQRFPSLAE 62 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS LV T S++A LD+ +++ K SI AD +E++I A+YL Sbjct: 63 GDLSRLRAQLVKEATISEIAFSLDIGDALKLGEGELKSAGWRRPSILADALEAIIGAVYL 122 Query: 129 DGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 DGG A V + + K + +D K+ LQE K PEY V SG H Sbjct: 123 DGGFFAAEALVLELYIEKLSTIDPKIIDKDPKSLLQEMLQGKKIAVPEYAVVHTSGEAHA 182 Query: 187 PRFTV 191 F V Sbjct: 183 QIFIV 187 >gi|206559398|ref|YP_002230159.1| ribonuclease III [Burkholderia cenocepacia J2315] gi|206561200|ref|YP_002231965.1| ribonuclease III [Burkholderia cenocepacia J2315] gi|198035436|emb|CAR51312.1| ribonuclease III 2 [Burkholderia cenocepacia J2315] gi|198037242|emb|CAR53164.1| ribonuclease III 1 [Burkholderia cenocepacia J2315] Length = 409 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 58 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|293410983|ref|ZP_06654559.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B354] gi|291471451|gb|EFF13935.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B354] Length = 189 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 99/185 (53%), Gaps = 3/185 (1%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD IL +I+ L++ F EG++S +LV T +++ARE +L +R+ Sbjct: 1 ERLEFLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLG 60 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAK 158 K SI AD VE+LI ++LD I+ + +++ R + G ++D K Sbjct: 61 PGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPK 120 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAA 217 T LQE+ + P Y V G HD FT+ ++SGL+ P G S+R AEQ AA Sbjct: 121 TRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAE 180 Query: 218 EVLKR 222 + LK+ Sbjct: 181 QALKK 185 >gi|107022210|ref|YP_620537.1| ribonuclease III [Burkholderia cenocepacia AU 1054] gi|116689156|ref|YP_834779.1| ribonuclease III [Burkholderia cenocepacia HI2424] gi|105892399|gb|ABF75564.1| RNAse III [Burkholderia cenocepacia AU 1054] gi|116647245|gb|ABK07886.1| RNAse III [Burkholderia cenocepacia HI2424] Length = 409 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/195 (34%), Positives = 100/195 (51%), Gaps = 7/195 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 4 SQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFGKL 60 Query: 67 KEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++I A Sbjct: 61 DEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ++LDGG E A + + + + +DAKT LQE+ P Y V G Sbjct: 120 VFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGA 179 Query: 184 DHDPRFTVVVEISGL 198 H+ +F V + L Sbjct: 180 AHNQQFEVECTVPKL 194 >gi|78065718|ref|YP_368487.1| ribonuclease III [Burkholderia sp. 383] gi|77966463|gb|ABB07843.1| RNAse III [Burkholderia sp. 383] Length = 408 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 58 SKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|296185386|ref|ZP_06853796.1| ribonuclease III [Clostridium carboxidivorans P7] gi|296050220|gb|EFG89644.1| ribonuclease III [Clostridium carboxidivorans P7] Length = 240 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/218 (35%), Positives = 119/218 (54%), Gaps = 6/218 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+++ F ++ LL+ ALTHSS ++ + + ERLEFLGD +L + IS LF ++ Sbjct: 17 LEQKLDVCFEDKELLKIALTHSSYANGKKNIKFNERLEFLGDSVLQISISEYLFLNYSKK 76 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ R +V + ++A++ DL +IR+S SI AD VE++IAA+ Sbjct: 77 TEGELTKRRALIVCENSLYEIAKKWDLGKYIRMSKGEELTGGRERVSILADCVEAIIAAI 136 Query: 127 YLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 Y+D G E A FV +K ++A+K+ K D KT+LQE V +Y + GP Sbjct: 137 YIDAGFEKAKGFVLTNFKDTIEKAIKN-KIILDYKTKLQEVMQKNGDVDIQYDLMKYEGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H +F V ++ G SK+ +EQ AA + LK Sbjct: 196 PHRRKFYTQVSVNNKVLGNGTGYSKKESEQSAAKKALK 233 >gi|240169618|ref|ZP_04748277.1| ribonuclease III [Mycobacterium kansasii ATCC 12478] Length = 241 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 119/230 (51%), Gaps = 14/230 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M+A R S L+ +G ++ LL ALTH S ++Y+ + ERLEFLGD +LGL I+ Sbjct: 1 MTASRQSLLDA-LGVDLSDE-LLSLALTHRS--YAYENGGLPTNERLEFLGDAVLGLTIT 56 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD---LASFIRVSSDLRKDVCSFMTS 113 L++ EG+L+ S+V+ + + VAR L L I + + +S Sbjct: 57 DELYHRHPDRSEGDLAKLRASVVNTQALADVARNLSDNGLGVHILLGRGEANTGGADKSS 116 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGV 171 I AD +ESL+ A+YL GIEV+ + K + A + D KT LQE A+ Sbjct: 117 ILADGMESLLGAIYLQHGIEVSRKVILKLFGPLLDAAATLGAGLDWKTSLQELTAARGLG 176 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 TP Y VT +GPDHD FT VV + GM SK+ AEQ AA+ K Sbjct: 177 TPSYLVT-STGPDHDKEFTAVVVVMDAEYGSGMGRSKKEAEQKAASAAYK 225 >gi|154483581|ref|ZP_02026029.1| hypothetical protein EUBVEN_01285 [Eubacterium ventriosum ATCC 27560] gi|149735491|gb|EDM51377.1| hypothetical protein EUBVEN_01285 [Eubacterium ventriosum ATCC 27560] Length = 190 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/181 (35%), Positives = 97/181 (53%), Gaps = 1/181 (0%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD +L LL S L+ + EG+++ SLV T + ARE+DL FI + Sbjct: 5 ERLEFLGDAVLELLSSEYLYKNMKDMPEGKMTKLRASLVCEPTLAMDAREIDLEDFIYLG 64 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 + SI +D E+LI A++LDGGIE A F+ K+ ++ K D+KT Sbjct: 65 KGEDETGGRKRDSIVSDAFEALIGAIFLDGGIEEAKYFILKF-ALNDIEKKKLFYDSKTV 123 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE ++ Y++ GPDH+ + +++G +G +K+AAEQ AA + L Sbjct: 124 LQERVNSVKNGNLVYEIIKEWGPDHNKTYEAAAKLNGKIIGKGQGHTKKAAEQQAAFDAL 183 Query: 221 K 221 K Sbjct: 184 K 184 >gi|296876109|ref|ZP_06900163.1| ribonuclease III [Streptococcus parasanguinis ATCC 15912] gi|296432820|gb|EFH18613.1| ribonuclease III [Streptococcus parasanguinis ATCC 15912] Length = 233 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 113/222 (50%), Gaps = 8/222 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ LE R F++ SLL+ A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MEKLQALLLE-RFQIVFSDSSLLDTAFTHTSYANEHRLLKISHNERLEFLGDAVLQLVIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + +R+ +I++ K +I Sbjct: 60 EYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDRYIKLGKGEEKSGGRDRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E F+ + + +++G+F + D KT LQE V + Sbjct: 120 DLFEAFLGALLLDQGVEAVKRFIYQVMIPK-VETGQFSQVIDYKTRLQELLQVHGDVEIQ 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 Y+V SGP H F V V ++G G SK+ AEQ AA Sbjct: 179 YQVVSESGPAHAKEFEVEVFVNGQTMGHGHGRSKKLAEQEAA 220 >gi|34497521|ref|NP_901736.1| ribonuclease III [Chromobacterium violaceum ATCC 12472] gi|81655793|sp|Q7NWC4|RNC_CHRVO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|34103376|gb|AAQ59738.1| ribonuclease III [Chromobacterium violaceum ATCC 12472] Length = 236 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 5/197 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 R+ L + + YAF LL +ALTH S S + + ER EF+GD IL ++ +L++ F Sbjct: 7 RFRRLSQALDYAFQKPELLRQALTHRSYSSA---NNERFEFVGDSILNYTVARMLYDQFP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGELS +LV+ T +++A EL L ++ + K SI AD +E+ A Sbjct: 64 QLTEGELSRLRANLVNQNTLAEIAHELKLGDYLYLGEGELKSGGFNRPSILADALEATFA 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+ D A V + + QR + + + +DAKT LQE A+ P+Y++ +SG Sbjct: 124 AVSFDADFAAAEQVVRRLYNQRVATIDTTRQAKDAKTRLQEALQARKLALPKYRILSQSG 183 Query: 183 PDHDPRFTVVVEISGLA 199 H+ F V ++ +A Sbjct: 184 EAHEQWFKVECDLGEMA 200 >gi|115314441|ref|YP_763164.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18] gi|122325533|sp|Q0BN07|RNC_FRATO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|115129340|gb|ABI82527.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18] Length = 230 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 18/230 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS +GY F + +LL +ALTH S + +++YERLEFLGD +L +I+ +L+ F Sbjct: 5 YSRFYNILGYNFKDYTLLIRALTHRSKT---KKNYERLEFLGDSVLSFVIAEVLYKQFTD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T +Q+A L + +I + + + I DV E++I A Sbjct: 62 LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGAS--EQGGHKREKILEDVFEAVIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWK----QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YLD + K+++ L + KF +D+K++LQE PEY + Sbjct: 120 IYLDSDFATVKKVILKWYQPIISSINLDTIKF-KDSKSKLQEILLQNALSLPEYSIETID 178 Query: 182 GPDHDPRFTVVV---EISGLAPAQGMDCSKRAAEQVAA---AEVLKREGI 225 G DH+ +FTVV +++ AQG S++ AEQ A E+L ++G+ Sbjct: 179 GKDHEQQFTVVAVSKDLNLRVKAQG--TSRKKAEQKTAEKMIEMLSQQGL 226 >gi|88856701|ref|ZP_01131356.1| ribonuclease III [marine actinobacterium PHSC20C1] gi|88813998|gb|EAR23865.1| ribonuclease III [marine actinobacterium PHSC20C1] Length = 233 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/214 (35%), Positives = 107/214 (50%), Gaps = 13/214 (6%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 N +L ALTH S ++ + ERLEFLGD ILG ++ L+ EG+L+ R Sbjct: 21 NPDVLTLALTHRSFAYENGGIANNERLEFLGDSILGQAVTVKLYRDNPELDEGDLAKRRA 80 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 SLVS+ +++AR + L ++IR+ + SI AD VE++I A YLD G + A Sbjct: 81 SLVSSVALAEIARLIGLGAYIRLGKGEEQTGGREKPSILADTVEAIIGAAYLDLGGDAAT 140 Query: 137 TFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVV 193 V + +F D KT LQE A A+ G P+Y++ SGPDH RF + Sbjct: 141 ALVLRLVAPLLADPERFGAAMDPKTSLQELA-AQLGRGVPDYRIE-DSGPDHSKRFHASL 198 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 +S A G SK+ AE AA E WT Sbjct: 199 VLSNDVIATGTGSSKKQAEMAAALEA------WT 226 >gi|330815986|ref|YP_004359691.1| Ribonuclease III [Burkholderia gladioli BSR3] gi|327368379|gb|AEA59735.1| Ribonuclease III [Burkholderia gladioli BSR3] Length = 403 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPQSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 58 SKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAI 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|289804515|ref|ZP_06535144.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 187 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 3/183 (1%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 +EFLGD IL +I+ L++ F EG++S +LV T +++ARE DL +R+ Sbjct: 1 MEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPG 60 Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTE 160 K SI AD VE+LI ++LD I+ + ++K R + G ++D KT Sbjct: 61 ELKSGGFRRESILADTVEALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTR 120 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEV 219 LQE+ + P Y V G HD FT+ ++SGL+ P G S+R AEQ AA + Sbjct: 121 LQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQA 180 Query: 220 LKR 222 LK+ Sbjct: 181 LKK 183 >gi|312868336|ref|ZP_07728536.1| ribonuclease III [Streptococcus parasanguinis F0405] gi|311096081|gb|EFQ54325.1| ribonuclease III [Streptococcus parasanguinis F0405] Length = 233 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 110/214 (51%), Gaps = 7/214 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L +R F++ SLL+ A TH+S ++ ++ ERLEFLGD +L L+IS L+ Sbjct: 8 LSERFQIVFSDSSLLDTAFTHTSYANEHRLLKISHNERLEFLGDAVLQLVISEYLYKEHP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+LS + +V E+ + +R+ +I++ K +I D+ E+ + Sbjct: 68 NRPEGDLSKFRSMIVREESLAGFSRDCQFDHYIKLGKGEEKSGGRDRDTILGDLFEAFLG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL LD G+E F+ + + +++G+F + D KT LQE V +Y+V +G Sbjct: 128 ALLLDQGVEAVKRFIYQVMIPK-VETGQFSQVIDYKTRLQELLQVHGDVEIQYQVVSEAG 186 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 P H F V V ++G G SK+ AEQ AA Sbjct: 187 PAHAKEFEVEVFVNGQTMGHGHGRSKKLAEQEAA 220 >gi|94311354|ref|YP_584564.1| ribonuclease III [Cupriavidus metallidurans CH34] gi|189043335|sp|Q1LKN1|RNC_RALME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|93355206|gb|ABF09295.1| RNase III [Cupriavidus metallidurans CH34] Length = 256 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 97/185 (52%), Gaps = 5/185 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++R+GY F+ LL++ALTH S HS Q + ERLEFLGD +L ++ +LF F E Sbjct: 6 LQQRLGYRFSKPELLQQALTHRS--HSAQHN-ERLEFLGDSVLNCAVADMLFGMFGKLDE 62 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV + ++A+ L L+ +R+ K SI AD +E+++ A++L Sbjct: 63 GDLSRVRANLVKQQALYEIAQMLQLSDALRLGEGELKSGGFRRPSILADALEAIVGAVFL 122 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G + A + K + + +DAKT LQE+ P+Y V G H Sbjct: 123 DAGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATHGAAHS 182 Query: 187 PRFTV 191 +F V Sbjct: 183 QQFEV 187 >gi|171463192|ref|YP_001797305.1| Ribonuclease III [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192730|gb|ACB43691.1| Ribonuclease III [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 263 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 7/186 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++R+GY F LL +ALTH S HS +++ ERLEFLGD IL +++ +L+ + E Sbjct: 12 LQERLGYTFKKPELLNQALTHRS--HS-KKNNERLEFLGDSILNCVVAEMLYERYSDLDE 68 Query: 69 GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G+LS VR N LV + ++A+ L L+ ++R+ K SI AD +E++ A++ Sbjct: 69 GDLSRVRAN-LVKQQALYEIAQTLSLSDYLRLGEGELKSGGFRRPSILADTLEAVTGAIF 127 Query: 128 LDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDGG E A T + K + + +D KT LQE + P Y VT +G H Sbjct: 128 LDGGFEAAKTSLRKLYSIILAHVDPKTLGKDDKTLLQECLQSYQLPLPAYNVTGTTGAAH 187 Query: 186 DPRFTV 191 + +F V Sbjct: 188 NQQFEV 193 >gi|313892793|ref|ZP_07826374.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412] gi|313442724|gb|EFR61135.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412] Length = 246 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 117/218 (53%), Gaps = 8/218 (3%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFDSAK 67 R+ ++ S+++ A TH+S ++ ++ + +RLEFLGD +L L+I LF ++ Sbjct: 25 RLDIPVSDISIIDCAFTHTSYANEHKSKHINHNQRLEFLGDAVLDLIIGEYLFKNYPDMA 84 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ + V ++ + V+R L L ++ + R + SI AD ESLI A+Y Sbjct: 85 EGNLTKIKAATVCEDSLASVSRSLQLGQYLLLGHGERASGGNDRNSILADTFESLIGAIY 144 Query: 128 LDGGIEVAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + A TFV K+ + ++AL+ GK D KT LQE+ Y++ SGPD Sbjct: 145 ISTDYQTAMTFVLKHLTIYIKQALE-GKRGNDYKTLLQEYVQRDGDKHIVYRLLSESGPD 203 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H F +VVEI+G+ G SK+ AEQ AA L++ Sbjct: 204 HAKTFHIVVEINGVTYEAGSGKSKKIAEQHAAQLTLEK 241 >gi|269215480|ref|ZP_06159334.1| ribonuclease III [Slackia exigua ATCC 700122] gi|269130967|gb|EEZ62042.1| ribonuclease III [Slackia exigua ATCC 700122] Length = 312 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/211 (35%), Positives = 109/211 (51%), Gaps = 4/211 (1%) Query: 13 IGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 IG AF + +L A+TH S + + SYERLEFLGD ILG +++ F+ + EG Sbjct: 18 IGVAFDDIDILLAAITHPSATEGKPVKFSYERLEFLGDSILGAIVANEAFHAYPEIDEGG 77 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ +LVS + S VA +L A I S R + S +V E+L+AAL+LD Sbjct: 78 LTRIKVALVSGSSLSDVAAKLGFADIIVFGSSERGTGRRGLHSALENVYEALVAALFLDK 137 Query: 131 GIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 G++ A FV + R ++ + + K+ LQE + G+TP YK+ GP HD F Sbjct: 138 GMDGARDFVRRTLIPRMDIEMAREPENPKSALQEKLQEE-GITPTYKLVETQGPPHDRTF 196 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V A AQG+ +K+ +E AA L Sbjct: 197 VSQVFAGLTALAQGIGRTKKESESQAAKAAL 227 >gi|134295164|ref|YP_001118899.1| ribonuclease III [Burkholderia vietnamiensis G4] gi|134138321|gb|ABO54064.1| RNAse III [Burkholderia vietnamiensis G4] Length = 416 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 58 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|296331168|ref|ZP_06873642.1| ribonuclease III [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|296151812|gb|EFG92687.1| ribonuclease III [Bacillus subtilis subsp. spizizenii ATCC 6633] Length = 213 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 101/204 (49%), Gaps = 7/204 (3%) Query: 25 KALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +A THSS + ++ E ERLEFLGD +L L IS LF + + EG+L+ ++V Sbjct: 3 QAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVC 62 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + +A EL + + ++ ADV E+ I ALYLD G+E +F+ Sbjct: 63 EPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVESFLK 122 Query: 141 KYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 Y + + G F D K++LQE+ + EYK+T GP H+ F +V + G Sbjct: 123 VYVFPK-INDGAFSHVMDFKSQLQEYVQRDGKGSLEYKITNEKGPAHNREFEAIVSLKGE 181 Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222 G SK+ AEQ AA E L + Sbjct: 182 PLGVGNGRSKKEAEQHAAQEALAK 205 >gi|115351064|ref|YP_772903.1| ribonuclease III [Burkholderia ambifaria AMMD] gi|115281052|gb|ABI86569.1| RNAse III [Burkholderia ambifaria AMMD] Length = 425 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPPSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 58 SKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAI 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|300780910|ref|ZP_07090764.1| ribonuclease III [Corynebacterium genitalium ATCC 33030] gi|300532617|gb|EFK53678.1| ribonuclease III [Corynebacterium genitalium ATCC 33030] Length = 252 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 5/222 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTL 58 + + +++L +R+G LL+ ALTH S + H + ERLEF+GD +LGL I+ Sbjct: 19 FAGIDHASLLERLGVDV-EPDLLKLALTHRSFANEHGTLPNNERLEFVGDAVLGLTIANE 77 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF+ F S E +LS +VS + VAR +DL + + + SI AD Sbjct: 78 LFDRFPSRPESDLSPMRARIVSRYGLADVARSIDLGAHVLLGKGEEATGGRKKDSILADT 137 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+++ A+Y G +V + + + + +++ + +D KTELQE G P Y T Sbjct: 138 TEAVLGAIYRQHGFDVTRDVITRLFDDK-IENAHWIQDWKTELQERVAELGGNPPVYTAT 196 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + GP+H+ FT V I G+ G +K+ AEQ +A E Sbjct: 197 AK-GPEHEQIFTAEVAIDGVRRGVGRGQNKKTAEQNSAREAF 237 >gi|89255958|ref|YP_513320.1| ribonuclease III [Francisella tularensis subsp. holarctica LVS] gi|187931188|ref|YP_001891172.1| ribonuclease III [Francisella tularensis subsp. mediasiatica FSC147] gi|254367315|ref|ZP_04983341.1| ribonuclease III [Francisella tularensis subsp. holarctica 257] gi|254368791|ref|ZP_04984804.1| hypothetical protein FTAG_00596 [Francisella tularensis subsp. holarctica FSC022] gi|122501056|sp|Q2A4N2|RNC_FRATH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238691551|sp|B2SFY4|RNC_FRATM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|89143789|emb|CAJ78994.1| Ribonuclease III [Francisella tularensis subsp. holarctica LVS] gi|134253131|gb|EBA52225.1| ribonuclease III [Francisella tularensis subsp. holarctica 257] gi|157121712|gb|EDO65882.1| hypothetical protein FTAG_00596 [Francisella tularensis subsp. holarctica FSC022] gi|187712097|gb|ACD30394.1| ribonuclease III [Francisella tularensis subsp. mediasiatica FSC147] Length = 230 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 18/230 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS +GY F + +LL +ALTH S + +++YERLEFLGD +L +I+ +L+ F Sbjct: 5 YSRFYNILGYNFKDYTLLIRALTHRSKT---KKNYERLEFLGDSVLSFVIAEVLYKQFTD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T +Q+A L + +I + + + I DV E++I A Sbjct: 62 LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGAS--EQGGHKREKILEDVFEAVIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YLD + K W Q + S +D+K++LQE PEY + Sbjct: 120 IYLDSDFATVKKVILK-WYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 178 Query: 182 GPDHDPRFTVVV---EISGLAPAQGMDCSKRAAEQVAA---AEVLKREGI 225 G DH+ +FTVV +++ AQG S++ AEQ A E+L ++G+ Sbjct: 179 GKDHEQQFTVVAVSKDLNLRVKAQG--TSRKKAEQKTAEKMIEMLSQQGL 226 >gi|254993548|ref|ZP_05275738.1| ribonuclease III [Listeria monocytogenes FSL J2-064] Length = 206 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 7/205 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 S I ALYLD GI+ TF+++ + + +G + + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPK-IDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQG 203 +GP H+ F V ++G +G Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKG 206 >gi|238854774|ref|ZP_04645104.1| ribonuclease III [Lactobacillus jensenii 269-3] gi|260664006|ref|ZP_05864859.1| ribonuclease III [Lactobacillus jensenii SJ-7A-US] gi|282933852|ref|ZP_06339200.1| ribonuclease III [Lactobacillus jensenii 208-1] gi|238832564|gb|EEQ24871.1| ribonuclease III [Lactobacillus jensenii 269-3] gi|260561892|gb|EEX27861.1| ribonuclease III [Lactobacillus jensenii SJ-7A-US] gi|281301941|gb|EFA94195.1| ribonuclease III [Lactobacillus jensenii 208-1] Length = 230 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/210 (34%), Positives = 109/210 (51%), Gaps = 11/210 (5%) Query: 14 GYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 G F N +LLE+A THSS + + + +YE+LEFLGD +L L +S L+ HF S EG Sbjct: 15 GIKFKNETLLEEAFTHSSYVNEHPKESVGNYEKLEFLGDAVLELAVSDYLYRHFPSLNEG 74 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +L+ +++V E S A E + I + K ++ DV E+ AL+LD Sbjct: 75 QLTRLRSNIVRTEGFSGFAIECGFPAEINLGHGEEKTGARERKTLLEDVFEAFNGALFLD 134 Query: 130 GGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHD 186 G++ F+ K + SG+F RD KT+LQE + EY+V S P + Sbjct: 135 QGMDAVQKFL-KLTVYPLIDSGEFTDSRDYKTDLQELLQVNGAIKIEYQVLEESKLPSN- 192 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 F V + + G ++G +K+AAEQVAA Sbjct: 193 --FKVALLVEGKKISEGSGHNKKAAEQVAA 220 >gi|238019508|ref|ZP_04599934.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748] gi|237864207|gb|EEP65497.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748] Length = 245 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 117/218 (53%), Gaps = 8/218 (3%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFDSAK 67 R+ ++ S+L+ A TH+S ++ ++ + +RLEFLGD +L L+I LF + Sbjct: 25 RLDIPVSDISILDCAFTHTSYANEHKSKHINHNQRLEFLGDAVLDLIIGEYLFKTYPDMA 84 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+L+ + V ++ + V+R L L ++ + R + SI AD ESLI A+Y Sbjct: 85 EGDLTKIKAATVCEDSLASVSRSLQLGQYLLLGHGERASGGNNRNSILADTFESLIGAIY 144 Query: 128 LDGGIEVAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + A FV K+ + ++AL+ GK +D KT LQE+ Y++ SGPD Sbjct: 145 ISTDYQTAMNFVLKHLITYIKQALE-GKRGKDYKTLLQEYVQRDGDKHTVYRLLSESGPD 203 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H F +VVEI+G+ G SK+ AEQ AA L++ Sbjct: 204 HAKTFHMVVEINGVTYEAGSGKSKKIAEQHAAQLTLEK 241 >gi|260886608|ref|ZP_05897871.1| ribonuclease III [Selenomonas sputigena ATCC 35185] gi|330839558|ref|YP_004414138.1| ribonuclease III [Selenomonas sputigena ATCC 35185] gi|260863751|gb|EEX78251.1| ribonuclease III [Selenomonas sputigena ATCC 35185] gi|329747322|gb|AEC00679.1| ribonuclease III [Selenomonas sputigena ATCC 35185] Length = 242 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 109/220 (49%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64 L +G F N LL +ALTH+S ++ + ERLEFLGD +L L ST LF F Sbjct: 19 LSDHLGIEFQNIVLLHEALTHTSYANEAKNKGVVHNERLEFLGDAVLELATSTYLFERFP 78 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGEL+ S+V T S+ A EL+L ++ + S+ AD E++I Sbjct: 79 NRPEGELTKARASIVREATLSRRAAELELGEYLLLGHGEASMGGGHRPSMLADAFEAVIG 138 Query: 125 ALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G + A +V K L SG+ +D KT LQE Y++ +G Sbjct: 139 AIYLDRGWQTAYDYVLKQLHDELLTIDSGENMKDYKTTLQEVVQKHVDSKIAYELLTETG 198 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 PDHD F V I+ G +K+ AEQ AA E L++ Sbjct: 199 PDHDKTFEFAVRINDAVYGTGKGRNKKEAEQGAAREALRK 238 >gi|227530552|ref|ZP_03960601.1| ribonuclease III [Lactobacillus vaginalis ATCC 49540] gi|227349558|gb|EEJ39849.1| ribonuclease III [Lactobacillus vaginalis ATCC 49540] Length = 251 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 106/220 (48%), Gaps = 7/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI--SHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 L K F N LL +A T +S H +Q + YER+EFLGD +L L++S ++ F Sbjct: 27 LAKEFDIHFTNPDLLAEAFTQASYVNEHPHQGLKFYERIEFLGDAVLELIVSEYIYKRFP 86 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G+L+ ++V ++ S+ A+E +IR+ + D+ ES I Sbjct: 87 ELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARQRPGLLCDIFESFIG 146 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G FV + + L G F DAKT LQE+ V EY + SG Sbjct: 147 ALYLDQGRPAVEKFVRRVIFPK-LDLGWFDHAVDAKTSLQEFLQRDGDVDIEYHLLQESG 205 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 ++DP F V V G +G SK+ AE AA++ L + Sbjct: 206 TENDPEFKVNVSADGKVIGEGTGSSKKHAEMKAASQALNK 245 >gi|194290152|ref|YP_002006059.1| ribonuclease iii [Cupriavidus taiwanensis LMG 19424] gi|238692743|sp|B3R1Z9|RNC_CUPTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|193223987|emb|CAQ69996.1| Ribonuclease III [Cupriavidus taiwanensis LMG 19424] Length = 256 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 5/197 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S HS Q + ERLEFLGD +L ++ +L+ F Sbjct: 1 MNLDALQQRLGYRFSKPELLQQALTHRS--HSAQHN-ERLEFLGDSVLNCAVADMLYGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L+ +R+ K SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLSDTLRLGEGELKSGGFRRPSILADALEAIV 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G + A + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDAGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177 Query: 182 GPDHDPRFTVVVEISGL 198 G H +F V + L Sbjct: 178 GAAHSQQFEVECTVPKL 194 >gi|172060069|ref|YP_001807721.1| ribonuclease III [Burkholderia ambifaria MC40-6] gi|171992586|gb|ACB63505.1| Ribonuclease III [Burkholderia ambifaria MC40-6] Length = 425 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPPSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 58 SKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAI 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|194366747|ref|YP_002029357.1| ribonuclease III [Stenotrophomonas maltophilia R551-3] gi|194349551|gb|ACF52674.1| Ribonuclease III [Stenotrophomonas maltophilia R551-3] Length = 226 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/214 (35%), Positives = 115/214 (53%), Gaps = 7/214 (3%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AF++ +LL++ALTH S + E RLEFLGD I+ ++ + L+ + A EG ++ Sbjct: 12 IGHAFSDPALLKQALTHRSAGAPHNE---RLEFLGDSIVNMMAAEALYRRWPKADEGAMT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLELGERLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDAGF 128 Query: 133 EVAGTFVDKYWKQ--RALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 E V ++ AL SG+ +D KT LQEW A+ P+Y++ SG DH F Sbjct: 129 EACRAVVLPWFSASIEALPASGRPEKDPKTRLQEWLQARQKALPQYELVSESGDDHAKHF 188 Query: 190 TVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 V ++ A + +G S+R AEQ AAA VL++ Sbjct: 189 RVRCIVADPAASTEGEGASRRLAEQQAAAAVLEQ 222 >gi|83652594|gb|ABC36657.1| ribonuclease III, putative [Burkholderia thailandensis E264] Length = 487 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/199 (34%), Positives = 102/199 (51%), Gaps = 7/199 (3%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF Sbjct: 18 SMPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQR 74 Query: 63 FDSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E+ Sbjct: 75 FSKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEA 133 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 134 IIGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVA 193 Query: 180 RSGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 194 THGAAHNQQFEVECTVPKL 212 >gi|310828474|ref|YP_003960831.1| ribonuclease III [Eubacterium limosum KIST612] gi|308740208|gb|ADO37868.1| ribonuclease III [Eubacterium limosum KIST612] Length = 222 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 117/220 (53%), Gaps = 16/220 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E RI Y F ++ LL+ ALTHSS S + + ERLEFLGD +L L+IS L+ ++ E Sbjct: 4 IEDRIAYTFKDKELLKVALTHSSHSGTTTNN-ERLEFLGDAVLELIISEYLY-KYNKLSE 61 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI-----RVSSDLRKDVCSFMTSIQADVVESLI 123 G+++ +++V AE+ SQ A +L+L ++ + + RK + A+ E+++ Sbjct: 62 GKMTKIRSNIVCAESLSQAASDLNLGEYMLLGKGEIVTGGRKRKSNL-----ANAFEAVM 116 Query: 124 AALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 A++LD + V ++ AL SG +D KTELQE EY + Sbjct: 117 GAVFLDSDYDTTKKVVLGTLEKNIELAL-SGGLIKDYKTELQEQIQKHSDNAIEYVLEKS 175 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP+H+ F + + +G+ ++G SK+ AEQ AA L Sbjct: 176 EGPEHNKTFFIDLTFNGVVVSKGTGKSKKEAEQNAAKNYL 215 >gi|126438815|ref|YP_001059800.1| ribonuclease III [Burkholderia pseudomallei 668] gi|126218308|gb|ABN81814.1| ribonuclease III [Burkholderia pseudomallei 668] Length = 467 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 58 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|113868517|ref|YP_727006.1| ribonuclease III [Ralstonia eutropha H16] gi|123133802|sp|Q0K8N3|RNC_RALEH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|113527293|emb|CAJ93638.1| dsRNA-specific ribonuclease [Ralstonia eutropha H16] Length = 256 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 5/197 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S HS Q + ERLEFLGD +L ++ +L+ F Sbjct: 1 MNLDALQQRLGYRFSKPELLQQALTHRS--HSAQHN-ERLEFLGDSVLNCAVADMLYGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L+ +R+ K SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLSDTLRLGEGELKSGGFRRPSILADALEAIV 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G + A + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDAGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177 Query: 182 GPDHDPRFTVVVEISGL 198 G H +F V + L Sbjct: 178 GAAHSQQFEVECTVPKL 194 >gi|332184579|gb|AEE26833.1| Ribonuclease III [Francisella cf. novicida 3523] Length = 230 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 18/230 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS +GY F + +LL +ALTH S + +++YERLEFLGD +L +I+ +L+ F Sbjct: 5 YSRFYNILGYKFKDYTLLIRALTHRSKT---KKNYERLEFLGDSVLSFVIAEVLYKQFTD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T +Q+A L + +I + + + I DV E++I A Sbjct: 62 LDEGKLSQLRSKLVKGATLAQLASSLKMDEYIILGAS--EQGGHKREKILEDVFEAVIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YLD + + W Q + S +D+K++LQE PEY + Sbjct: 120 IYLDSDFATVKKVILR-WYQPIILSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETIE 178 Query: 182 GPDHDPRFTVVV---EISGLAPAQGMDCSKRAAEQVAA---AEVLKREGI 225 G DH+ FTVV +++ AQG S++ AEQ AA E+L ++G+ Sbjct: 179 GKDHEQEFTVVAMSKDLNLQVKAQG--TSRKKAEQKAAEKMIEMLSQQGL 226 >gi|161723174|ref|YP_442265.2| ribonuclease III [Burkholderia thailandensis E264] Length = 469 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 58 SKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|53725351|ref|YP_102339.1| ribonuclease III [Burkholderia mallei ATCC 23344] gi|121599423|ref|YP_993770.1| ribonuclease III [Burkholderia mallei SAVP1] gi|124385463|ref|YP_001028764.1| ribonuclease III [Burkholderia mallei NCTC 10229] gi|126450086|ref|YP_001081328.1| ribonuclease III [Burkholderia mallei NCTC 10247] gi|167000779|ref|ZP_02266586.1| ribonuclease III [Burkholderia mallei PRL-20] gi|238562760|ref|ZP_00439921.2| ribonuclease III [Burkholderia mallei GB8 horse 4] gi|254178423|ref|ZP_04885078.1| ribonuclease III [Burkholderia mallei ATCC 10399] gi|254199232|ref|ZP_04905598.1| ribonuclease III [Burkholderia mallei FMH] gi|254205539|ref|ZP_04911891.1| ribonuclease III [Burkholderia mallei JHU] gi|254357706|ref|ZP_04973979.1| ribonuclease III [Burkholderia mallei 2002721280] gi|52428774|gb|AAU49367.1| ribonuclease III/hypothetical protein, fusion [Burkholderia mallei ATCC 23344] gi|121228233|gb|ABM50751.1| ribonuclease III [Burkholderia mallei SAVP1] gi|124293483|gb|ABN02752.1| ribonuclease III/hypothetical protein [Burkholderia mallei NCTC 10229] gi|126242956|gb|ABO06049.1| ribonuclease III [Burkholderia mallei NCTC 10247] gi|147748828|gb|EDK55902.1| ribonuclease III [Burkholderia mallei FMH] gi|147752982|gb|EDK60047.1| ribonuclease III [Burkholderia mallei JHU] gi|148026833|gb|EDK84854.1| ribonuclease III [Burkholderia mallei 2002721280] gi|160699462|gb|EDP89432.1| ribonuclease III [Burkholderia mallei ATCC 10399] gi|238522001|gb|EEP85448.1| ribonuclease III [Burkholderia mallei GB8 horse 4] gi|243063329|gb|EES45515.1| ribonuclease III [Burkholderia mallei PRL-20] Length = 467 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 58 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|294782048|ref|ZP_06747374.1| ribonuclease III [Fusobacterium sp. 1_1_41FAA] gi|294480689|gb|EFG28464.1| ribonuclease III [Fusobacterium sp. 1_1_41FAA] Length = 234 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 102/191 (53%), Gaps = 6/191 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LE ++ Y F NR+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ ++ Sbjct: 7 LEHKLNYYFNNRNLLKTALLHKSLGNEKKEYKNQNNERLELLGDAVLDLIVAEYLYRNYK 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 SA EG ++ +VS ++++R++ L F+ +S SI AD E+++ Sbjct: 67 SASEGTIAKLKAMIVSEPILAKISRQIGLGKFLMLSKGEILSGGRNRESILADAFEAVLG 126 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+Y+D +E A +F + +Q ++ + D K+ LQE+ F P Y++ G Sbjct: 127 AVYMDSNLEDARSFALNHIEQYITHIEEDEDILDFKSILQEYVQKNFKTVPTYELISEKG 186 Query: 183 PDHDPRFTVVV 193 PDH F + V Sbjct: 187 PDHMKEFEIQV 197 >gi|126454458|ref|YP_001067087.1| ribonuclease III [Burkholderia pseudomallei 1106a] gi|167825159|ref|ZP_02456630.1| ribonuclease III [Burkholderia pseudomallei 9] gi|167846656|ref|ZP_02472164.1| ribonuclease III [Burkholderia pseudomallei B7210] gi|167911876|ref|ZP_02498967.1| ribonuclease III [Burkholderia pseudomallei 112] gi|242317956|ref|ZP_04816972.1| ribonuclease III [Burkholderia pseudomallei 1106b] gi|254191245|ref|ZP_04897749.1| ribonuclease III [Burkholderia pseudomallei Pasteur 52237] gi|254195715|ref|ZP_04902141.1| ribonuclease III [Burkholderia pseudomallei S13] gi|254296871|ref|ZP_04964324.1| ribonuclease III [Burkholderia pseudomallei 406e] gi|126228100|gb|ABN91640.1| ribonuclease III [Burkholderia pseudomallei 1106a] gi|157808000|gb|EDO85170.1| ribonuclease III [Burkholderia pseudomallei 406e] gi|157938917|gb|EDO94587.1| ribonuclease III [Burkholderia pseudomallei Pasteur 52237] gi|169652460|gb|EDS85153.1| ribonuclease III [Burkholderia pseudomallei S13] gi|242141195|gb|EES27597.1| ribonuclease III [Burkholderia pseudomallei 1106b] Length = 467 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 58 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|76811515|ref|YP_334276.1| ribonuclease III [Burkholderia pseudomallei 1710b] gi|167739551|ref|ZP_02412325.1| ribonuclease III [Burkholderia pseudomallei 14] gi|254258167|ref|ZP_04949221.1| ribonuclease III [Burkholderia pseudomallei 1710a] gi|76580968|gb|ABA50443.1| ribonuclease III [Burkholderia pseudomallei 1710b] gi|254216856|gb|EET06240.1| ribonuclease III [Burkholderia pseudomallei 1710a] Length = 467 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 58 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|254184210|ref|ZP_04890800.1| ribonuclease III [Burkholderia pseudomallei 1655] gi|184214741|gb|EDU11784.1| ribonuclease III [Burkholderia pseudomallei 1655] Length = 467 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 58 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|134277308|ref|ZP_01764023.1| ribonuclease III [Burkholderia pseudomallei 305] gi|134250958|gb|EBA51037.1| ribonuclease III [Burkholderia pseudomallei 305] Length = 467 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 58 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|53720035|ref|YP_109021.1| ribonuclease III [Burkholderia pseudomallei K96243] gi|167816752|ref|ZP_02448432.1| ribonuclease III [Burkholderia pseudomallei 91] gi|167895244|ref|ZP_02482646.1| ribonuclease III [Burkholderia pseudomallei 7894] gi|167919873|ref|ZP_02506964.1| ribonuclease III [Burkholderia pseudomallei BCC215] gi|52210449|emb|CAH36432.1| ribonuclease III [Burkholderia pseudomallei K96243] Length = 467 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 58 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|227833427|ref|YP_002835134.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975] gi|262184417|ref|ZP_06043838.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975] gi|227454443|gb|ACP33196.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975] Length = 256 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 111/221 (50%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L K +G N LL ALTH S ++ + + ERLEFLGD +LGL I+ L+ + Sbjct: 22 HAPLLKALGVEI-NDELLCLALTHRSFANENGHLPNNERLEFLGDAVLGLSIAAKLYEKY 80 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S E ++S S+VS S VARE+ + + + + SI AD E+++ Sbjct: 81 PSRPESDISKMRASIVSRYGLSDVAREIGVGEHVLLGKGEQSTGGRDKDSILADTTEAIL 140 Query: 124 AALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 A+Y G EVA V K + + A+ SG+ D KT LQE P Y T Sbjct: 141 GAIYRQHGFEVARGVVLKLFAAKIDNAVVSGR-HMDWKTTLQELCAELKAAMPVYSAT-S 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +GP+HD F V ++GL +G +K+ AEQ AA E + Sbjct: 199 TGPEHDQTFNAVATVAGLTVGRGTGHNKKLAEQQAAEEACQ 239 >gi|217420723|ref|ZP_03452228.1| ribonuclease III [Burkholderia pseudomallei 576] gi|237813195|ref|YP_002897646.1| ribonuclease III [Burkholderia pseudomallei MSHR346] gi|217396135|gb|EEC36152.1| ribonuclease III [Burkholderia pseudomallei 576] gi|237506043|gb|ACQ98361.1| ribonuclease III [Burkholderia pseudomallei MSHR346] Length = 467 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 58 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|167903627|ref|ZP_02490832.1| ribonuclease III [Burkholderia pseudomallei NCTC 13177] Length = 467 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 58 GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176 Query: 181 SGPDHDPRFTVVVEISGL 198 G H+ +F V + L Sbjct: 177 HGAAHNQQFEVECTVPKL 194 >gi|313901966|ref|ZP_07835382.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965] gi|313467755|gb|EFR63253.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965] Length = 284 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 111/212 (52%), Gaps = 9/212 (4%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKE 68 G A A +ALTH+S + ++ ERLEFLGD +L L ++ +F + E Sbjct: 50 TGVAPARPEPFLEALTHASYRSEHPDTAGPDNERLEFLGDAVLNLCVTDYIFRTYPQRPE 109 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS ++V AET + A+ L L +R+ S+ AD E+++AA+YL Sbjct: 110 GELSKLRAAVVRAETLAATAQRLGLGELLRLGRGEEATGGRQRPSVLADAYEAMVAAVYL 169 Query: 129 DGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTFRSGPD 184 G+E A F+ + +R +S D KT LQE + + G+ P Y+V +GP+ Sbjct: 170 QEGLEGARAFILRTLGDDIRRLAESSGACDDPKTALQELSR-RLGLGEPTYRVVGAAGPE 228 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 HDPR+TV V + G AQ + SK+ AE+ AA Sbjct: 229 HDPRYTVEVRVGGRPLAQAVGRSKKVAEREAA 260 >gi|149926460|ref|ZP_01914721.1| ribonuclease III [Limnobacter sp. MED105] gi|149824823|gb|EDM84037.1| ribonuclease III [Limnobacter sp. MED105] Length = 226 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 102/211 (48%), Gaps = 6/211 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 + Y+F +++LL ALTH S S + E RLEFLGD +L S LLF EG++S Sbjct: 1 MAYSFKDQALLRLALTHRSYSSHHNE---RLEFLGDSVLNCAASILLFETHPDMDEGKMS 57 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + LV + + V R L L ++ + + + + SI AD +E+L A+ LD G Sbjct: 58 RVRSHLVKQDCLAMVGRNLLLDQYLFLGAGELRSAKTIKDSIVADALEALFGAILLDSGF 117 Query: 133 EVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E A V + K L++ +D KT LQE K P Y+V G P F+ Sbjct: 118 EAARDCVVRLLKPVMLETPIESMGKDPKTRLQELLQGKRMKLPMYRVLVEGGTSASPEFS 177 Query: 191 VVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220 V + L + G S+R AEQ AA VL Sbjct: 178 VECAVEDLEITKVGQGHSRRVAEQHAAQAVL 208 >gi|62258114|gb|AAX77768.1| unknown protein [synthetic construct] Length = 265 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 18/230 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS +GY F + +LL +ALTH S + +++YERLEFLGD +L +I+ +L+ F Sbjct: 31 YSRFYNILGYNFKDYTLLIRALTHRSKT---KKNYERLEFLGDSVLSFVIAEVLYKQFID 87 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T +Q+A L + +I + + + I DV E++I A Sbjct: 88 LAEGKLSQLRSKLVKGATLAQLASSLKMDEYIILGA--SEQGGHKREKILEDVFEAVIGA 145 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YLD + K W Q + S +D+K++LQE PEY + Sbjct: 146 IYLDSDFATVKKVILK-WYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 204 Query: 182 GPDHDPRFTVVV---EISGLAPAQGMDCSKRAAEQVAAA---EVLKREGI 225 G DH+ +FTVV +++ AQG S++ AEQ A E+L ++G+ Sbjct: 205 GKDHEQQFTVVAVSKDLNLRVKAQG--TSRKKAEQKTAEKMIEMLSQQGL 252 >gi|288553095|ref|YP_003425030.1| ribonuclease III [Bacillus pseudofirmus OF4] gi|288544255|gb|ADC48138.1| ribonuclease III [Bacillus pseudofirmus OF4] Length = 263 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 9/216 (4%) Query: 12 RIGYAFANRSLLEKALTHSSIS-----HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +I F NR LL +A THSS +S+Q++ ERLEFLGD +L L +S L+ F+S Sbjct: 41 KIDLTFENRKLLIQAFTHSSYVNEHRIYSFQDN-ERLEFLGDAVLELAVSQFLYKKFNSM 99 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGE++ S+V + ++ A EL+ + + ++ ADV ES I AL Sbjct: 100 SEGEMTKLRASIVCEPSLARFAEELEFGELVLLGKGEEMTGGRNRPALLADVFESFIGAL 159 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G+E F+ + + + G F D K++LQE+ +Y + GP Sbjct: 160 YLDQGLEAVYKFLSQTMYPK-INDGAFSHMMDFKSQLQEFIQRDNLGQIQYVIVQEIGPA 218 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H+ F V+++ G SK+ AEQ AA + L Sbjct: 219 HNREFVSEVQLNESKLGVGSGRSKKEAEQHAAQQAL 254 >gi|253999489|ref|YP_003051552.1| ribonuclease III [Methylovorus sp. SIP3-4] gi|313201514|ref|YP_004040172.1| ribonuclease III [Methylovorus sp. MP688] gi|253986168|gb|ACT51025.1| ribonuclease III [Methylovorus sp. SIP3-4] gi|312440830|gb|ADQ84936.1| ribonuclease III [Methylovorus sp. MP688] Length = 224 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/194 (34%), Positives = 97/194 (50%), Gaps = 5/194 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LE+ +G+ F N LL +ALTH S HS + + ERLEFLGD +L +I+ LF F Sbjct: 4 TGLERLLGHDFTNGQLLTQALTHRS--HSARNN-ERLEFLGDGVLNCIIANQLFQRFSKL 60 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS LV T ++A+ L L +++ K S+ AD +E++I A+ Sbjct: 61 PEGDLSRLRAHLVKEPTLCEIAQRLQLGDMLKLGEGELKSGGWRRPSVLADALEAIIGAV 120 Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LD G A V + + A+ +DAK+ LQE+ + PEY VT G Sbjct: 121 FLDAGFIAAEALVVRLYTPLLEAIDPKSIGKDAKSLLQEYLQGRKIALPEYTVTATEGEA 180 Query: 185 HDPRFTVVVEISGL 198 H F V I L Sbjct: 181 HCQLFKVDCTIPKL 194 >gi|134301463|ref|YP_001121431.1| ribonuclease III [Francisella tularensis subsp. tularensis WY96-3418] gi|189043317|sp|A4IWK9|RNC_FRATW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|134049240|gb|ABO46311.1| ribonuclease III [Francisella tularensis subsp. tularensis WY96-3418] Length = 230 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 18/230 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS +GY F + +LL +ALTH S + +++YERLEFLGD +L +I+ +L+ F Sbjct: 5 YSRFYNILGYNFKDCTLLIRALTHRSKT---KKNYERLEFLGDSVLSFVIAEVLYKQFTD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T +Q+A L + +I + + + I DV E++I A Sbjct: 62 LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGAS--EQGGHKREKILEDVFEAVIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YLD + K W Q + S +D+K++LQE PEY + Sbjct: 120 IYLDSDFATVKKVILK-WYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 178 Query: 182 GPDHDPRFTVVV---EISGLAPAQGMDCSKRAAEQVAA---AEVLKREGI 225 G DH+ +FTVV +++ AQG S++ AEQ A E+L ++G+ Sbjct: 179 GKDHEQQFTVVAVSKDLNLRVKAQG--TSRKKAEQKTAEKMIEMLSQQGL 226 >gi|104774253|ref|YP_619233.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423334|emb|CAI98181.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 231 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 110/222 (49%), Gaps = 15/222 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L+++ G F + LLE+A THSS + +YE+LEFLGD +L +S L+ HF Sbjct: 10 LDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTFGNYEKLEFLGDAVLEFTVSDYLYRHFQ 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ +++V E S+VA + I + K ++ DV E+ Sbjct: 70 HLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALLEDVFEAFNG 129 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA---LKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTF 179 AL+LD GIE V+K+ Q + +G F RD KT+LQE VT EY+V Sbjct: 130 ALFLDQGIEA----VEKFLSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVLN 185 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 S P F V V + G A G +K+ AEQ AA+ L+ Sbjct: 186 ES--QQPPHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALE 225 >gi|325126041|gb|ADY85371.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 231 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 110/222 (49%), Gaps = 15/222 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L+++ G F + LLE+A THSS + +YE+LEFLGD +L +S L+ HF Sbjct: 10 LDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTVSDYLYRHFQ 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ +++V E S+VA + I + K ++ DV E+ Sbjct: 70 HLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALLEDVFEAFNG 129 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA---LKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTF 179 AL+LD GIE V+K+ Q + +G F RD KT+LQE VT EY+V Sbjct: 130 ALFLDQGIEA----VEKFLSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVLN 185 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 S P F V V + G A G +K+ AEQ AA+ L+ Sbjct: 186 ES--QQPPHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALE 225 >gi|56708583|ref|YP_170479.1| ribonuclease III [Francisella tularensis subsp. tularensis SCHU S4] gi|110671054|ref|YP_667611.1| ribonuclease III [Francisella tularensis subsp. tularensis FSC198] gi|224457765|ref|ZP_03666238.1| ribonuclease III [Francisella tularensis subsp. tularensis MA00-2987] gi|254371212|ref|ZP_04987214.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875445|ref|ZP_05248155.1| ribonuclease III [Francisella tularensis subsp. tularensis MA00-2987] gi|81597132|sp|Q5NER3|RNC_FRATT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|123359364|sp|Q14G66|RNC_FRAT1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54112881|gb|AAV29074.1| NT02FT1862 [synthetic construct] gi|56605075|emb|CAG46188.1| Ribonuclease III [Francisella tularensis subsp. tularensis SCHU S4] gi|110321387|emb|CAL09571.1| Ribonuclease III [Francisella tularensis subsp. tularensis FSC198] gi|151569452|gb|EDN35106.1| hypothetical protein FTBG_00981 [Francisella tularensis subsp. tularensis FSC033] gi|254841444|gb|EET19880.1| ribonuclease III [Francisella tularensis subsp. tularensis MA00-2987] gi|282159811|gb|ADA79202.1| Ribonuclease III [Francisella tularensis subsp. tularensis NE061598] Length = 230 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 18/230 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS +GY F + +LL +ALTH S + +++YERLEFLGD +L +I+ +L+ F Sbjct: 5 YSRFYNILGYNFKDYTLLIRALTHRSKT---KKNYERLEFLGDSVLSFVIAEVLYKQFID 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T +Q+A L + +I + + + I DV E++I A Sbjct: 62 LAEGKLSQLRSKLVKGATLAQLASSLKMDEYIILGAS--EQGGHKREKILEDVFEAVIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YLD + K W Q + S +D+K++LQE PEY + Sbjct: 120 IYLDSDFATVKKVILK-WYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 178 Query: 182 GPDHDPRFTVVV---EISGLAPAQGMDCSKRAAEQVAA---AEVLKREGI 225 G DH+ +FTVV +++ AQG S++ AEQ A E+L ++G+ Sbjct: 179 GKDHEQQFTVVAVSKDLNLRVKAQG--TSRKKAEQKTAEKMIEMLSQQGL 226 >gi|325529480|gb|EGD06389.1| ribonuclease III [Burkholderia sp. TJI49] Length = 279 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 7/193 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F E Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFSKLDE 57 Query: 69 GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++I A++ Sbjct: 58 GDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAIIGAVF 116 Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDGG E A + + + + +DAKT LQE+ P Y V G H Sbjct: 117 LDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAH 176 Query: 186 DPRFTVVVEISGL 198 + +F V + L Sbjct: 177 NQQFEVECTVPKL 189 >gi|296270740|ref|YP_003653372.1| ribonuclease III [Thermobispora bispora DSM 43833] gi|296093527|gb|ADG89479.1| ribonuclease III [Thermobispora bispora DSM 43833] Length = 267 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 99/192 (51%), Gaps = 5/192 (2%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +LE+ALTH S ++ + ERLEFLGD +LGL+++ L+ + EG+L+ ++V Sbjct: 30 ILEQALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRNHPDMPEGQLAKLRAAVV 89 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 + + VAR LDL ++R+ +SI AD +E+LI +Y+D G++ A V Sbjct: 90 NMRALADVARSLDLGKYLRLGRGEEGTGGRDKSSILADTLEALIGTVYVDKGLDEAFRVV 149 Query: 140 DKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + + +S D KT LQE A+ PEY V SGPDH F V + G Sbjct: 150 HQLFDPLIERSASLGAGLDWKTSLQELTAAESLGVPEYHVD-ESGPDHAKSFVATVRVGG 208 Query: 198 LAPAQGMDCSKR 209 +G SK+ Sbjct: 209 KEYGKGTGRSKK 220 >gi|296130133|ref|YP_003637383.1| ribonuclease III [Cellulomonas flavigena DSM 20109] gi|296021948|gb|ADG75184.1| ribonuclease III [Cellulomonas flavigena DSM 20109] Length = 240 Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 110/222 (49%), Gaps = 9/222 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 MS S LEK +G + LL ALTH S +H + ERLEFLGD +LGL+++ Sbjct: 1 MSTAAQSLLEK-LGVHL-DPELLVLALTHRSFAHEAGGIPTNERLEFLGDTVLGLVVTEH 58 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ EG+L+ + VS +QVAR LDL S++ + SI +D Sbjct: 59 LYRTHPGNSEGDLAKMRAATVSQRALAQVARSLDLGSYVLLGKGELATGGRDKDSILSDT 118 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGV-TPEY 175 +E+L A+YL G+E A VD+ + + D KT LQE + A G+ P Y Sbjct: 119 LEALFGAVYLSHGLEPARVLVDRLVRPTLTAAADLGAGLDWKTSLQELS-ASLGLGAPYY 177 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 +VT GPDH FT + G G +K+ AEQ AA+ Sbjct: 178 EVTGE-GPDHARTFTASAVVGGEVRGTGTGPAKKIAEQEAAS 218 >gi|227544367|ref|ZP_03974416.1| ribonuclease III [Lactobacillus reuteri CF48-3A] gi|300909772|ref|ZP_07127233.1| ribonuclease III [Lactobacillus reuteri SD2112] gi|227185630|gb|EEI65701.1| ribonuclease III [Lactobacillus reuteri CF48-3A] gi|300893637|gb|EFK86996.1| ribonuclease III [Lactobacillus reuteri SD2112] Length = 233 Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 104/218 (47%), Gaps = 7/218 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64 L K F N +LL +A T +S + + YER+EFLGD +L L++S ++ F Sbjct: 9 LAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVSEYIYKRFP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G+L+ ++V ++ S+ A+E +IR+ + D+ ES I Sbjct: 69 ELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARERPGLLCDIFESFIG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G FV + + L G F DAKT LQE+ + EY + SG Sbjct: 129 ALYLDQGRPAVEKFVQRVIFPK-LDMGWFDHAVDAKTSLQEFLQRDGDIAIEYHLVEESG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 ++DP F V V +G +G SK+ AE AA + L Sbjct: 188 TENDPEFKVNVTANGDVIGEGKGSSKKHAEMQAAQQAL 225 >gi|148544383|ref|YP_001271753.1| ribonuclease III [Lactobacillus reuteri DSM 20016] gi|184153747|ref|YP_001842088.1| ribonuclease III [Lactobacillus reuteri JCM 1112] gi|194466493|ref|ZP_03072480.1| Ribonuclease III [Lactobacillus reuteri 100-23] gi|227363192|ref|ZP_03847326.1| ribonuclease III [Lactobacillus reuteri MM2-3] gi|325682703|ref|ZP_08162219.1| ribonuclease III [Lactobacillus reuteri MM4-1A] gi|189043324|sp|A5VKP2|RNC_LACRD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|229564353|sp|B2G826|RNC_LACRJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|148531417|gb|ABQ83416.1| RNAse III [Lactobacillus reuteri DSM 20016] gi|183225091|dbj|BAG25608.1| ribonuclease III [Lactobacillus reuteri JCM 1112] gi|194453529|gb|EDX42426.1| Ribonuclease III [Lactobacillus reuteri 100-23] gi|227071798|gb|EEI10087.1| ribonuclease III [Lactobacillus reuteri MM2-3] gi|324977053|gb|EGC14004.1| ribonuclease III [Lactobacillus reuteri MM4-1A] Length = 233 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 104/218 (47%), Gaps = 7/218 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64 L K F N +LL +A T +S + + YER+EFLGD +L L++S ++ F Sbjct: 9 LAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVSEYIYKRFP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G+L+ ++V ++ S+ A+E +IR+ + D+ ES I Sbjct: 69 ELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARERPGLLCDIFESFIG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G FV + + L G F DAKT LQE+ + EY + SG Sbjct: 129 ALYLDQGRPAVEKFVQRVIFPK-LDMGWFDHAVDAKTSLQEFLQRDGDIAIEYHLVEESG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 ++DP F V V +G +G SK+ AE AA + L Sbjct: 188 TENDPEFKVNVTANGDVIGEGKGSSKKHAEMQAAQQAL 225 >gi|116514343|ref|YP_813249.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093658|gb|ABJ58811.1| RNAse III [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 231 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 110/222 (49%), Gaps = 15/222 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L+++ G F + LLE+A THSS + +YE+LEFLGD +L +S L+ HF Sbjct: 10 LDEKYGIRFKDVRLLEEAFTHSSYLNENPGKTLGNYEKLEFLGDAVLEFTVSDYLYRHFQ 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ +++V E S+VA + I + K ++ DV E+ Sbjct: 70 HLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALLEDVFEAFNG 129 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA---LKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTF 179 AL+LD GIE V+K+ Q + +G F RD KT+LQE VT EY+V Sbjct: 130 ALFLDQGIEA----VEKFLSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVLN 185 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 S P F V V + G A G +K+ AEQ AA+ L+ Sbjct: 186 ES--QQPPHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALE 225 >gi|167563529|ref|ZP_02356445.1| ribonuclease III [Burkholderia oklahomensis EO147] Length = 293 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 7/193 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F E Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFSKLDE 57 Query: 69 GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++I A++ Sbjct: 58 GDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVF 116 Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDGG E A + + + + +DAKT LQE+ P Y V G H Sbjct: 117 LDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAH 176 Query: 186 DPRFTVVVEISGL 198 + +F V + L Sbjct: 177 NQQFEVECTVPKL 189 >gi|254524282|ref|ZP_05136337.1| ribonuclease III [Stenotrophomonas sp. SKA14] gi|219721873|gb|EED40398.1| ribonuclease III [Stenotrophomonas sp. SKA14] Length = 226 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/214 (35%), Positives = 113/214 (52%), Gaps = 7/214 (3%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+ F + +LL++ALTH S + E RLEFLGD I+ ++ + L+ + A EG ++ Sbjct: 12 IGHPFRDAALLKQALTHRSAGAPHNE---RLEFLGDSIVNMMAAEALYRRWPKADEGAMT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRSLELGERLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDAGF 128 Query: 133 EVAGTFVDKYWKQ--RALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 E V ++ AL SG+ +D KT LQEW A+ P+Y++ SG DH F Sbjct: 129 EACRAVVLPWFSASIEALPASGRPEKDPKTRLQEWLQARQKALPQYELVSESGDDHAKHF 188 Query: 190 TVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 V ++ A + +G S+R AEQ AAA VL++ Sbjct: 189 RVRCNVADPAASTEGEGASRRLAEQQAAAAVLEQ 222 >gi|300811711|ref|ZP_07092185.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497287|gb|EFK32335.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 231 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 110/222 (49%), Gaps = 15/222 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L+++ G F + LLE+A THSS + +YE+LEFLGD +L +S L+ HF Sbjct: 10 LDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTVSDYLYRHFQ 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ +++V E S+VA + I + K ++ DV E+ Sbjct: 70 HLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALLEDVFEAFNG 129 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA---LKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTF 179 AL+LD GIE V+K+ Q + +G F RD KT+LQE VT EY+V Sbjct: 130 ALFLDQGIEA----VEKFSSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVLN 185 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 S P F V V + G A G +K+ AEQ AA+ L+ Sbjct: 186 ES--QQPPHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALE 225 >gi|256851300|ref|ZP_05556689.1| ribonuclease III [Lactobacillus jensenii 27-2-CHN] gi|260660724|ref|ZP_05861639.1| ribonuclease III [Lactobacillus jensenii 115-3-CHN] gi|282933255|ref|ZP_06338642.1| ribonuclease III [Lactobacillus jensenii 208-1] gi|297206169|ref|ZP_06923564.1| ribonuclease III [Lactobacillus jensenii JV-V16] gi|256616362|gb|EEU21550.1| ribonuclease III [Lactobacillus jensenii 27-2-CHN] gi|260548446|gb|EEX24421.1| ribonuclease III [Lactobacillus jensenii 115-3-CHN] gi|281302759|gb|EFA94974.1| ribonuclease III [Lactobacillus jensenii 208-1] gi|297149295|gb|EFH29593.1| ribonuclease III [Lactobacillus jensenii JV-V16] Length = 230 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/210 (34%), Positives = 109/210 (51%), Gaps = 11/210 (5%) Query: 14 GYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 G F N +LLE+A THSS + + + +YE+LEFLGD +L L +S L+ HF S EG Sbjct: 15 GIKFKNETLLEEAFTHSSYVNEHPKESAGNYEKLEFLGDAVLELAVSDYLYRHFPSLNEG 74 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +L+ +++V E S A E + I + K ++ DV E+ AL+LD Sbjct: 75 QLTRLRSNIVRTEGFSGFAIECGFPAEINLGRGEEKTGARERKTLLEDVFEAFNGALFLD 134 Query: 130 GGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHD 186 G++ F+ K + SG+F RD KT+LQE + EY+V + P + Sbjct: 135 QGMDAVQKFL-KLTVYPLIDSGEFTDSRDYKTDLQELLQVNGAIKIEYQVLEETKLPSN- 192 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 F V + + G ++G +K+AAEQVAA Sbjct: 193 --FKVALFVEGKKISEGSGHNKKAAEQVAA 220 >gi|269302927|gb|ACZ33027.1| ribonuclease III [Chlamydophila pneumoniae LPCoLN] Length = 237 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 11/225 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 + +E ++ + F LLE ALTH S + E ERLEFLGD +LGL+++ LF F Sbjct: 8 TAIEAKLNFTFTQPKLLEIALTHPSYKNESAVQIEDSERLEFLGDAVLGLIVTEHLFLLF 67 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S EG LS SLV+A+ C + L + ++ + + S A++ ES++ Sbjct: 68 PSMDEGTLSTARASLVNAKACCRYTTTLGIGDYLLIGKGEKIQSERGRLSAYANLFESIL 127 Query: 124 AALYLDGGIEVAGTFVDKYWKQR----ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 A+YLDGG+ A R L SG + K LQ++ +F V P Y+ T Sbjct: 128 GAVYLDGGLSPARKLTVPLLPPREEILPLMSG----NPKNLLQQFTQKQFRVLPVYQSTA 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + + + + V ++ +G SK+ AE++AA + L G Sbjct: 184 VTDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQQALDTYG 228 >gi|167586632|ref|ZP_02379020.1| ribonuclease III [Burkholderia ubonensis Bu] Length = 278 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 7/193 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F E Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFGKLDE 57 Query: 69 GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++I A++ Sbjct: 58 GDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVF 116 Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDGG E A + + + + +DAKT LQE+ P Y V G H Sbjct: 117 LDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAH 176 Query: 186 DPRFTVVVEISGL 198 + +F V + L Sbjct: 177 NQQFEVECTVPKL 189 >gi|94987013|ref|YP_594946.1| ribonuclease III [Lawsonia intracellularis PHE/MN1-00] gi|94731262|emb|CAJ54625.1| dsRNA-specific ribonuclease [Lawsonia intracellularis PHE/MN1-00] Length = 233 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 107/215 (49%), Gaps = 10/215 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 L++ +GY F + LL ALTHSS + E ERLEFLGD +L + IS LF Sbjct: 6 LQEDLGYYFKDEQLLITALTHSSWVNENDVTAEHNERLEFLGDAVLEICISEELFKRHPE 65 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EGEL+ ++LV+ + +AREL L ++ ++ ++ AD +E++ A Sbjct: 66 AREGELTRMRSNLVNTKMLVLLARELKLNQYLLLARGEENQGGRQRNTLLADTMEAVFGA 125 Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +++DG + +V D +W + KS +D KT LQE P+Y + Sbjct: 126 VFVDGDLFYARKVISKSYDNFWPK---KSAALVKDFKTRLQEETQRHIKGLPKYILEGMH 182 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GP+H+ F V VE+ + + AEQ AA Sbjct: 183 GPEHEKIFEVCVELPDGQVFRASGTGLKRAEQEAA 217 >gi|241668007|ref|ZP_04755585.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876541|ref|ZP_05249251.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842562|gb|EET20976.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 230 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 116/227 (51%), Gaps = 12/227 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS L K +GY+F N +LL +ALTH S + +++YERLEFLGD ILG +I+ +L+ F Sbjct: 5 YSRLYKILGYSFKNYTLLVRALTHRSKT---KKNYERLEFLGDSILGFVIAEVLYMEFPD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T + +A L +I + + + I DV E++I A Sbjct: 62 LAEGKLSQIRSKLVKGVTLANLALNFKLDEYIILGAS--EQGGHKREKILEDVFEAIIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLD + ++K L + +D+K++LQE PEY + G Sbjct: 120 IYLDSDFATVKKVIVNWYKPVISTLNLDDVKVKDSKSKLQEILLQNGLSLPEYSIETIDG 179 Query: 183 PDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAA---AEVLKREGI 225 DH+ FTV + L + S++ AEQ AA ++L ++G+ Sbjct: 180 KDHEQEFTVKALSNDLNIKVRAKGTSRKKAEQKAAEKMIQILSQQGL 226 >gi|225873636|ref|YP_002755095.1| ribonuclease III [Acidobacterium capsulatum ATCC 51196] gi|225793249|gb|ACO33339.1| ribonuclease III [Acidobacterium capsulatum ATCC 51196] Length = 302 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 85/261 (32%), Positives = 131/261 (50%), Gaps = 47/261 (18%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH-------------------------SYQESYERL 43 LE +GY F ++ LL +ALTHSS+++ S E E+L Sbjct: 20 LEAALGYTFQDKGLLARALTHSSLAYEQTAQTATPAAARATGKSSEARTRRSPLEDNEQL 79 Query: 44 EFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 EFLGD +LGL+++ L+ EG+L+ ++LVS + QVA L L +++R+ Sbjct: 80 EFLGDAVLGLIVAEALYRAHPEMSEGQLTRLRSALVSRKHMGQVAHRLHLGTYLRMGRGE 139 Query: 104 RKDVCSFMTSIQADVVESLIAALYLD-----GGIEVAGT----FVDKYWKQRALKS---- 150 + ++ A+ E+LIAA+YLD G E A T ++++ + +L S Sbjct: 140 ERSGGRKKPALLANAAEALIAAVYLDAAGITGPCETALTAARAIIERHVIEPSLPSLLQE 199 Query: 151 ---GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL--AP----A 201 G D K+ LQE+ ++ PEY VT +SGPDH RF V V + G AP A Sbjct: 200 ASRGTSIGDHKSALQEFLQSEHRGQPEYVVTGQSGPDHHKRFLVEVRLPGKAGAPGTALA 259 Query: 202 QGMDCSKRAAEQVAAAEVLKR 222 +G+ +K+ AEQ AA L++ Sbjct: 260 RGIGGTKKHAEQEAARRALRK 280 >gi|167627437|ref|YP_001677937.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189043314|sp|B0TXH8|RNC_FRAP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|167597438|gb|ABZ87436.1| Ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 230 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 116/227 (51%), Gaps = 12/227 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS L K +GY+F N +LL +ALTH S + +++YERLEFLGD ILG +I+ +L+ F Sbjct: 5 YSRLYKILGYSFKNYTLLVRALTHRSKT---KKNYERLEFLGDSILGFVIAEVLYMEFPD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T + +A L +I + + + I DV E++I A Sbjct: 62 LAEGKLSQIRSKLVKGVTLANLALNFKLDEYIILGAS--EQGGHKREKILEDVFEAIIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLD + ++K L + +D+K++LQE PEY + G Sbjct: 120 IYLDSDFATVKKVIVNWYKPVISTLNLDDVKVKDSKSKLQEILLQNGLSLPEYSIETIDG 179 Query: 183 PDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAA---AEVLKREGI 225 DH+ FTV + L + S++ AEQ AA ++L ++G+ Sbjct: 180 KDHEQEFTVKALSNDLNIEVRAKGTSRKKAEQKAAEKMIQILSQQGL 226 >gi|254423554|ref|ZP_05037272.1| ribonuclease III [Synechococcus sp. PCC 7335] gi|196191043|gb|EDX86007.1| ribonuclease III [Synechococcus sp. PCC 7335] Length = 228 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 10/213 (4%) Query: 17 FANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F N +L ++A+TH S ++ + E ERLEFLGD IL L + LF F EGEL+ Sbjct: 16 FTNSALWQQAMTHKSFANEQPTATEHNERLEFLGDAILTFLSAEYLFVRFPKQSEGELTP 75 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG--G 131 ++LV + A+ L L ++R+ K+ + E+LI A +LD Sbjct: 76 MRSALVDQSQLHRFAQGLKLDEYLRLGKGAEKEGARKSARLLCSAFEALIGAYFLDQEHN 135 Query: 132 IEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +++ ++ ++ +++G +D KT LQEWA G PEY GPDH Sbjct: 136 LQLVKDYITPIFESAIAPDVEAGV--KDDKTRLQEWAQKTTGSVPEYVEISTLGPDHAKE 193 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F + V+I G + +G SK+ A+++AA L+ Sbjct: 194 FVIEVQIGGKSYGRGSGRSKQKAQKLAARSTLE 226 >gi|114775465|ref|ZP_01451033.1| ribonuclease III [Mariprofundus ferrooxydans PV-1] gi|114553576|gb|EAU55957.1| ribonuclease III [Mariprofundus ferrooxydans PV-1] Length = 229 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/212 (33%), Positives = 109/212 (51%), Gaps = 4/212 (1%) Query: 9 LEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L++ IGY F N +LL++ALTH S++ + ERLEFLGD +LGL+++ L F Sbjct: 11 LQQVIGYRFNNPALLKRALTHCSALRSAVSGDLERLEFLGDAVLGLVVAEYLHQSFPEEP 70 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS +LV ++ VA + L++ + V R + SI A+ VE++I A++ Sbjct: 71 EGQLSRMRANLVCRDSLLVVASDWRLSACLIVGDGERGEYGIKSPSIVANAVEAVIGAVF 130 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + G + + V W+ G+ RDAK+ LQE K PEY + R G + Sbjct: 131 EESGWDASRRVVLTAWRPMLDDIGRVDPRDAKSRLQELTQGKGWGLPEYVLVDR-GVGYQ 189 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 PRF + G K+ AE +AAAE Sbjct: 190 PRFEATCSVQEKVVGHGSGERKKLAE-IAAAE 220 >gi|256397117|ref|YP_003118681.1| ribonuclease III [Catenulispora acidiphila DSM 44928] gi|256363343|gb|ACU76840.1| ribonuclease III [Catenulispora acidiphila DSM 44928] Length = 276 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/203 (34%), Positives = 108/203 (53%), Gaps = 8/203 (3%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 R+G R L+++ALTH S ++ + ERLEFLGD +LGL+++ L+ EG Sbjct: 24 RLGLPVDAR-LIDRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYTTHSELPEG 82 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +L+ +++V+++ ++VAR L L ++++ SI AD +E+LI ++YLD Sbjct: 83 QLAKLRSAVVNSKALAEVARGLRLGDYVKLGRGEETTGGRDKASILADTLEALIGSVYLD 142 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEW-AHAKFGVTPEYKVTFRSGPDHD 186 GIEVA V + + S D KT LQE A A GV P+Y+VT +GPDHD Sbjct: 143 HGIEVAFDLVRRLFGPLIATSATLGAGLDWKTSLQELTAVAGIGV-PDYRVT-ETGPDHD 200 Query: 187 PRFTVVVEISGLAPAQGMDCSKR 209 F + G G SK+ Sbjct: 201 KFFEADACVGGTVYGHGSGRSKK 223 >gi|167470281|ref|ZP_02334985.1| ribonuclease III [Yersinia pestis FV-1] Length = 195 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 5/191 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + E RLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIHTIERLILEWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRF 189 G HD F Sbjct: 178 QVRGEAHDQEF 188 >gi|15617978|ref|NP_224262.1| ribonuclease III [Chlamydophila pneumoniae CWL029] gi|15835590|ref|NP_300114.1| ribonuclease III [Chlamydophila pneumoniae J138] gi|16752990|ref|NP_445263.1| ribonuclease III [Chlamydophila pneumoniae AR39] gi|7531191|sp|Q9Z9C7|RNC_CHLPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|4376309|gb|AAD18207.1| Ribonuclease III [Chlamydophila pneumoniae CWL029] gi|7189635|gb|AAF38526.1| ribonuclease III [Chlamydophila pneumoniae AR39] gi|8978428|dbj|BAA98265.1| ribonuclease III [Chlamydophila pneumoniae J138] Length = 237 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 11/225 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 + +E ++ + F LLE ALTH S + E ERLEFLGD +LGL+++ LF F Sbjct: 8 TAIEAKLNFTFTQPKLLEIALTHPSYKNESAVQIEDSERLEFLGDAVLGLIVTEHLFLLF 67 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S EG LS SLV+A+ C + L + ++ + + S A++ ES++ Sbjct: 68 PSMDEGTLSTARASLVNAKACCRYTTMLGIGDYLLIGKGEKIQSERGRLSAYANLFESIL 127 Query: 124 AALYLDGGIEVAGTFVDKYWKQR----ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 A+YLDGG+ A R L SG + K LQ++ +F V P Y+ T Sbjct: 128 GAVYLDGGLSPARKLTVPLLPPREEILPLMSG----NPKNLLQQFTQKQFRVLPVYQSTA 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + + + + V ++ +G SK+ AE++AA + L G Sbjct: 184 VTDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQQALDTYG 228 >gi|218247605|ref|YP_002372976.1| Ribonuclease III [Cyanothece sp. PCC 8801] gi|257061062|ref|YP_003138950.1| ribonuclease III [Cyanothece sp. PCC 8802] gi|218168083|gb|ACK66820.1| Ribonuclease III [Cyanothece sp. PCC 8801] gi|256591228|gb|ACV02115.1| ribonuclease III [Cyanothece sp. PCC 8802] Length = 236 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 7/204 (3%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ ALTH +IS +++Y++LEFLGD ++ L + LL + +A GE + + + Sbjct: 28 NYFWLDLALTHPTISQ--EKNYQQLEFLGDSVIRLAAAELLLETYPNAPVGEFAALRSMM 85 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGT 137 VS T +++A L S++ VS KD ++ + AD E+++ ALYL +E+ Sbjct: 86 VSDRTLAELADSFTLESYLLVSDSAAKDKVGRVSRL-ADAFEAVLGALYLSTHTMELIRP 144 Query: 138 FVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV-TFRSGPDHDPRFTVVVE 194 ++D+ K +A ++ R++ K +QEW A++ + PEY+V T +S P P F V Sbjct: 145 WLDELLKVKAEEIRQDPARQNYKDAVQEWTQAQYKLLPEYRVQTIKSLPTEQPYFLAEVW 204 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAE 218 + G SK+ AEQ AA + Sbjct: 205 LQNRKLGSGEGRSKKMAEQAAAKD 228 >gi|224825223|ref|ZP_03698329.1| Ribonuclease III [Lutiella nitroferrum 2002] gi|224602894|gb|EEG09071.1| Ribonuclease III [Lutiella nitroferrum 2002] Length = 238 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 101/198 (51%), Gaps = 5/198 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 +++ L +GY F LL +ALTH S + ER EF+GD IL ++ +LF+ F Sbjct: 8 VKFGRLSVALGYRFTRPELLRQALTHRSFGSP---NNERFEFIGDSILNYTVARMLFDRF 64 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S EGELS +LV+ + +++A L L ++ + K SI AD +E+ Sbjct: 65 PSLSEGELSRLRANLVNQSSLAEIALGLGLGDYLYLGEGELKSGGFNRPSILADALEATF 124 Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+ D A V + ++QR A+ K +DAKT LQE A+ P+Y++ +S Sbjct: 125 AAVSFDTDFAAAENVVRRLYEQRVAAIDPTKHAKDAKTRLQEALQARKLALPKYRILSQS 184 Query: 182 GPDHDPRFTVVVEISGLA 199 G H+ F V ++ LA Sbjct: 185 GEAHEQWFKVECDLGELA 202 >gi|189499162|ref|YP_001958632.1| Ribonuclease III [Chlorobium phaeobacteroides BS1] gi|189494603|gb|ACE03151.1| Ribonuclease III [Chlorobium phaeobacteroides BS1] Length = 271 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 106/218 (48%), Gaps = 5/218 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65 LE +G++ + L ALTH SI H + E S +RLEFLGD +L L+IS LL+ F Sbjct: 43 LEDILGFSPIDEKLYVIALTHRSIVHDHPEASDSNQRLEFLGDAVLDLIISELLYTVFPE 102 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 + EG+LS +V+ ++ + A ++ L + + K TS AD E+LI A Sbjct: 103 SDEGKLSSNRAKIVNRKSLAGFAGKISLGEHLLIGETADKINIQTSTSSLADAFEALIGA 162 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 LYLD G+E F+ ++ K + K+ L E+ + P Y V G Sbjct: 163 LYLDKGLEETRKFIMRHVAGHVDIKKIDTVENNYKSRLIEYTQSCQIAPPVYTVVSEEGA 222 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +H+ FT+ V +G K+ AEQ AA E L+ Sbjct: 223 EHEKLFTIEVSCDNRPLGKGSARRKKDAEQTAAREALE 260 >gi|313906054|ref|ZP_07839406.1| ribonuclease III [Eubacterium cellulosolvens 6] gi|313469099|gb|EFR64449.1| ribonuclease III [Eubacterium cellulosolvens 6] Length = 228 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 113/220 (51%), Gaps = 7/220 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIS 56 M LR LE++ G+ F + S L+ A++HSS ++ ++ ERLEFLGD +L L+ S Sbjct: 1 MKKLR--ELEQKTGHVFNDISWLKLAMSHSSYANEQHLGHRGCNERLEFLGDAVLELVSS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L++ + EG+L+ SLV T + AR + L ++ + S+ + Sbjct: 59 EYLYDTYPEMPEGKLTRLRASLVCEPTLAYDARCIGLPEYLLLGKGEDATGGRKRDSVVS 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+ I A++ DGG E A F+ +Y +++ + D+KT LQE + Y+ Sbjct: 119 DALEATIGAIFKDGGFEEAKKFILRYI-MNDVENKQLFHDSKTRLQEMIQSVTDEELSYQ 177 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + SGPDH+ F V + +G SK+AAEQ AA Sbjct: 178 IVAESGPDHEKVFEAEVRLGDKLLGRGTGHSKKAAEQQAA 217 >gi|256847360|ref|ZP_05552806.1| ribonuclease III [Lactobacillus coleohominis 101-4-CHN] gi|256716024|gb|EEU30999.1| ribonuclease III [Lactobacillus coleohominis 101-4-CHN] Length = 233 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/212 (32%), Positives = 103/212 (48%), Gaps = 7/212 (3%) Query: 17 FANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N LL +A T +S + + E YER+EFLGD +L L +S ++ + +G+L+ Sbjct: 17 FQNPDLLAEAFTQASYVNEHPEQHLKYYERIEFLGDAVLQLFVSEYIYRRYPELLQGKLT 76 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 ++V ++ S+ A+E +IR+ + D+ ES I ALYLD G Sbjct: 77 RLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRPGLLCDIFESFIGALYLDQGR 136 Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 + F+ + + L G F D KT LQE+ V EY + +G ++ P F Sbjct: 137 DAVERFIHRVIFPK-LDMGWFDHAVDTKTSLQEFLQRDGDVDIEYHLLDETGSENAPEFK 195 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V V G AQG SK+ AE AAA+ LK+ Sbjct: 196 VNVSADGQVLAQGTGSSKKHAEMDAAAQALKK 227 >gi|225075386|ref|ZP_03718585.1| hypothetical protein NEIFLAOT_00391 [Neisseria flavescens NRL30031/H210] gi|224953204|gb|EEG34413.1| hypothetical protein NEIFLAOT_00391 [Neisseria flavescens NRL30031/H210] Length = 239 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 18/225 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +++KR+GY F N LL++ALTH S + + E R EF+GD IL ++ +LF+ F Sbjct: 11 HRSIQKRLGYEFRNMELLQQALTHRSYNAKHNE---RFEFVGDSILNYSVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS +LV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LSEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRA----LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + D A V + +R L GK +D+KT LQE A+ P+Y++ ++ Sbjct: 128 VSFDADFSAAEKVVRHLFAERVKRADLNIGK--KDSKTALQEALQARRFALPKYRIEEQA 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDC-----SKRAAEQVAAAEVLK 221 D F + ++ L G C S++ AEQ AA E L+ Sbjct: 186 EQTADAMFVISCDLGEL----GFICNARGSSRKVAEQKAACEALE 226 >gi|312194940|ref|YP_004015001.1| ribonuclease III [Frankia sp. EuI1c] gi|311226276|gb|ADP79131.1| ribonuclease III [Frankia sp. EuI1c] Length = 319 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 106/204 (51%), Gaps = 12/204 (5%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL++ALTH S ++ + ERLEFLGD +L L+++ L+N EG L+ + S+V Sbjct: 45 LLDRALTHRSYAYENGGLPTNERLEFLGDAVLQLVVTDALYNRHPDLPEGALAKQRASVV 104 Query: 80 SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 ++ + VAR + + ++ + SI AD +E+LI A+YL+ G+EVA Sbjct: 105 NSRALADVARVIGPKGIGPYLLLGKGEETTGGRDKASILADTLEALIGAVYLELGLEVAA 164 Query: 137 TFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 V +Y+ + A + D KT LQE A+ G+ P V SGPDH RFT Sbjct: 165 QLVHRYFDPLLDEAAGRGAGL--DWKTSLQERT-AELGMGPPDYVVTDSGPDHAKRFTAR 221 Query: 193 VEISGLAPAQGMDCSKRAAEQVAA 216 IS +G SK+ AEQ AA Sbjct: 222 ARISDRIYGEGEGGSKKEAEQRAA 245 >gi|33241390|ref|NP_876331.1| ribonuclease III [Chlamydophila pneumoniae TW-183] gi|33235898|gb|AAP97988.1| ribonuclease III [Chlamydophila pneumoniae TW-183] Length = 237 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 11/225 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 + +E ++ + F LLE ALTH S + E ERLEFLGD +LGL+++ LF F Sbjct: 8 TAIEAKLNFTFTQPKLLEIALTHPSYKNESAVQIEDSERLEFLGDAVLGLIVTEHLFLLF 67 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S EG LS SLV+A+ C + L + ++ + + S A++ ES++ Sbjct: 68 PSMDEGTLSTARASLVNAKACCRYTTVLGIGDYLLIGKGEKIQSERGRLSAYANLFESIL 127 Query: 124 AALYLDGGIEVAGTFVDKYWKQR----ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 A+YLDGG+ A R L SG + K LQ++ +F V P Y+ T Sbjct: 128 GAVYLDGGLSPARKLTVPLLPPREEILPLMSG----NPKNLLQQFTQKQFRVLPVYQSTA 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + + + + V ++ +G SK+ AE++AA + L G Sbjct: 184 VTDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQQALDTYG 228 >gi|38234119|ref|NP_939886.1| ribonuclease III [Corynebacterium diphtheriae NCTC 13129] gi|81564732|sp|Q6NGH3|RNC_CORDI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|38200381|emb|CAE50069.1| ribonuclease III [Corynebacterium diphtheriae] Length = 249 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/201 (33%), Positives = 103/201 (51%), Gaps = 5/201 (2%) Query: 20 RSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 R LL ALTH S ++ + ERLEFLGD +LGL ++ L+ + S+ E ++S S Sbjct: 36 RELLVLALTHRSFANENGMLPNNERLEFLGDSVLGLSVAGQLYQQYTSSPESDISKMRAS 95 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 +VS + +ARE++L I + + SI AD E+L+ A+YL G E+A Sbjct: 96 IVSRYGLADIAREINLGQHILLGKGEQLHDGRSKDSILADTTEALLGAIYLAHGFEIARD 155 Query: 138 FVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 V + +K + + +D KT LQE + P Y T +GP+H+ FT V + Sbjct: 156 TVLRLFKHKIDTASATGLHQDWKTTLQERLAERNLEMPTYTSTV-TGPEHEQTFTAEVAV 214 Query: 196 SGLAPAQGMDCSKRAAEQVAA 216 G G+ +K+ AEQ AA Sbjct: 215 HGTVLGTGVGTNKKLAEQAAA 235 >gi|167619235|ref|ZP_02387866.1| ribonuclease III [Burkholderia thailandensis Bt4] Length = 434 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 7/193 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F E Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFSKLDE 57 Query: 69 GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++I A++ Sbjct: 58 GDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVF 116 Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDGG E A + + + + +DAKT LQE+ P Y V G H Sbjct: 117 LDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAH 176 Query: 186 DPRFTVVVEISGL 198 + +F V + L Sbjct: 177 NQQFEVECTVPKL 189 >gi|15835187|ref|NP_296946.1| ribonuclease III [Chlamydia muridarum Nigg] gi|270285359|ref|ZP_06194753.1| ribonuclease III [Chlamydia muridarum Nigg] gi|270289375|ref|ZP_06195677.1| ribonuclease III [Chlamydia muridarum Weiss] gi|301336756|ref|ZP_07224958.1| ribonuclease III [Chlamydia muridarum MopnTet14] gi|13878715|sp|Q9PK97|RNC_CHLMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|7190609|gb|AAF39406.1| ribonuclease III [Chlamydia muridarum Nigg] Length = 232 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 104/215 (48%), Gaps = 3/215 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 +E ++ + F+ LL ALTH S + + E ERLEFLGD +LGL+++ LF F S Sbjct: 10 VESKLKFTFSQPRLLVTALTHPSYRNEFPSDGEDSERLEFLGDAVLGLVVTEHLFLLFPS 69 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG LS ++LV+AE C ++L L + + + S A++ E+++ A Sbjct: 70 LNEGLLSTTRSALVNAEACFNYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLFEAILGA 129 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +YLDGG+ A + + + K LQ++ V P Y S D Sbjct: 130 VYLDGGLAPARQIIVPLLPNKEAILPLMLVNPKNRLQQFTQQTLKVLPTYIALPWSSEDG 189 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P + V V ++ +G SK+ AE++AA + L Sbjct: 190 TPGYHVQVFVNEKLWGEGFAGSKKEAEKLAAKQAL 224 >gi|255066864|ref|ZP_05318719.1| ribonuclease III [Neisseria sicca ATCC 29256] gi|255048939|gb|EET44403.1| ribonuclease III [Neisseria sicca ATCC 29256] Length = 239 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 118/222 (53%), Gaps = 12/222 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++ ++GY F + +LL++ALTH S + ++ ER EF+GD IL ++ +LF+ F Sbjct: 11 HAAIQNKLGYHFKDTALLQQALTHRSY---HAKNNERFEFVGDSILNYTVAKMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + +R +K F+ +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFAEAEKVVRHLFAER-VKRADFKTQGKDNKTALQEALQARRLALPKYRIEEQIG 186 Query: 183 PDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQVAAAEVLK 221 +D F + ++ L AQG S++ AEQ AA E L+ Sbjct: 187 HANDSMFLISCDLGELGFICKAQG--SSRKVAEQQAAKEALQ 226 >gi|262068132|ref|ZP_06027744.1| ribonuclease III [Fusobacterium periodonticum ATCC 33693] gi|291378220|gb|EFE85738.1| ribonuclease III [Fusobacterium periodonticum ATCC 33693] Length = 234 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 102/191 (53%), Gaps = 6/191 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LE ++ Y F NR+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ ++ Sbjct: 7 LEHKLNYYFNNRNLLKTALLHKSLGNEKKEYKNQNNERLELLGDAVLDLIVAEYLYRNYK 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 SA EG ++ +VS ++++R++ L F+ +S SI AD E+++ Sbjct: 67 SASEGTIAKLKAMIVSEPILAKISRQIGLGKFLMLSKGEILSGGRNRESILADAFEAVLG 126 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+Y+D +E A +F + +Q ++ + D K+ LQE+ F P Y++ G Sbjct: 127 AVYMDSNLEDARSFALGHIEQYITHIEEDEDILDFKSILQEYVQKNFRTVPIYELISEKG 186 Query: 183 PDHDPRFTVVV 193 PDH F + V Sbjct: 187 PDHMKEFEIQV 197 >gi|167720558|ref|ZP_02403794.1| ribonuclease III [Burkholderia pseudomallei DM98] Length = 438 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 7/193 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F E Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFGKLDE 57 Query: 69 GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++I A++ Sbjct: 58 GDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVF 116 Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDGG E A + + + + +DAKT LQE+ P Y V G H Sbjct: 117 LDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAH 176 Query: 186 DPRFTVVVEISGL 198 + +F V + L Sbjct: 177 NQQFEVECTVPKL 189 >gi|257453602|ref|ZP_05618892.1| ribonuclease III [Enhydrobacter aerosaccus SK60] gi|257449060|gb|EEV24013.1| ribonuclease III [Enhydrobacter aerosaccus SK60] Length = 275 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 112/230 (48%), Gaps = 24/230 (10%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 ++GY F N +L AL H S + +YERLEFLGD +LG++I+ LF + EG L Sbjct: 42 QMGYQFDNVNLPIMALMHRSFDSEH--NYERLEFLGDALLGVIIAEALFLRYPDYNEGRL 99 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG- 130 S SLV ET +A++L+L+ ++ + RK SI AD VE+LI A+YLD Sbjct: 100 SRLRASLVREETLVIIAKQLNLSDYLILGVGERKGGGRQRASILADSVEALIGAIYLDSQ 159 Query: 131 -----GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 V F D + K +K K +DAK+ LQE A P Y+VT G Sbjct: 160 NFDTVKACVLAWFEDLFEK---VKEQKVLKDAKSRLQELLQAHQLALPRYEVTETIGNAP 216 Query: 186 DPRFTVVVEI---------SGLAPAQGMDC----SKRAAEQVAAAEVLKR 222 + F V ++ +AP Q + S+R AEQ A +L + Sbjct: 217 NQIFVVSCQVEIIFDNKTAKPIAPTQALVTAQGESRRIAEQRCAEAMLAK 266 >gi|167570687|ref|ZP_02363561.1| ribonuclease III [Burkholderia oklahomensis C6786] Length = 454 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 7/193 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F E Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFSKLDE 57 Query: 69 GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++I A++ Sbjct: 58 GDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVF 116 Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDGG E A + + + + +DAKT LQE+ P Y V G H Sbjct: 117 LDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAH 176 Query: 186 DPRFTVVVEISGL 198 + +F V + L Sbjct: 177 NQQFEVECTVPKL 189 >gi|288576266|ref|ZP_05978490.2| ribonuclease III [Neisseria mucosa ATCC 25996] gi|288565937|gb|EFC87497.1| ribonuclease III [Neisseria mucosa ATCC 25996] Length = 271 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 118/222 (53%), Gaps = 12/222 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++ ++GY F + +LL++ALTH S + ++ ER EF+GD IL ++ +LF+ F Sbjct: 43 HTAIQNKLGYHFKDTALLQQALTHRSY---HAKNNERFEFVGDSILNYTVAKMLFDAFPK 99 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 100 LTEGELSRLRASLVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 159 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + +R +K F+ +D KT LQE A+ P+Y++ + G Sbjct: 160 VSFDADFAEAEKVVRHLFAER-VKRADFKTQGKDNKTALQEALQARRLALPKYRIEEQIG 218 Query: 183 PDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQVAAAEVLK 221 +D F + ++ L AQG S++ AEQ AA E L+ Sbjct: 219 HANDSMFLISCDLGELGFICKAQG--SSRKVAEQQAAKEALQ 258 >gi|320108696|ref|YP_004184286.1| ribonuclease III [Terriglobus saanensis SP1PR4] gi|319927217|gb|ADV84292.1| ribonuclease III [Terriglobus saanensis SP1PR4] Length = 252 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 122/241 (50%), Gaps = 26/241 (10%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLIST 57 M+ + L +R+GY F + LL+ ALTHSS++ + ES ER+EF+GD ++GL+++ Sbjct: 1 MAKAAKTGLAERLGYKFRDAKLLDLALTHSSLAFEAGTASESNERMEFVGDAVVGLIVAE 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF F S EGEL+ LVS + +V L L ++++ + ++ A+ Sbjct: 61 SLFQRFPSLGEGELTRMRALLVSRKHLGEVGARLGLGEYLQLGRGEEQSGGRKKPALMAN 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDK---YWKQRALKS--------GKFRRDAKTELQEWAH 166 +E+++AA+YLDGG+ V++ K L+ G D K+ LQE Sbjct: 121 AMEAVLAAVYLDGGLSAVQEIVEREVVLPKMPELERAAGEQTHFGGVVGDYKSALQELLQ 180 Query: 167 AKFGV---TPEYKVTFRSGPDHDPRFTV-VVEISGLAPAQ-------GMDCSKRAAEQVA 215 A+ GV Y SGPDH F V ++ + G A ++ G +K+AA+Q A Sbjct: 181 AR-GVGSAVARYVTAEESGPDHRKHFRVELMLVEGDAASKKETLLAVGEGPTKKAAQQKA 239 Query: 216 A 216 A Sbjct: 240 A 240 >gi|332298046|ref|YP_004439968.1| Ribonuclease 3 [Treponema brennaborense DSM 12168] gi|332181149|gb|AEE16837.1| Ribonuclease 3 [Treponema brennaborense DSM 12168] Length = 256 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 117/227 (51%), Gaps = 14/227 (6%) Query: 1 MSALRYSTL---EKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLL 54 +SA R + L E+ I F + LL+ A H S S+ + + + ERLEFLGD +LG+ Sbjct: 21 LSAARRNQLLDFERAISVHFNDLQLLDLAFHHRSYSNEGANTRYNNERLEFLGDAVLGMA 80 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 +T L+ EG+L+ + +VS T + +A E+ + S + + +I Sbjct: 81 TATYLYESMLERPEGDLARIKSVVVSEMTLAPIALEIGVDSCLVLGKGEELSGGRTKKAI 140 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGV 171 AD VE++I A YLD G A V + Q+ L++ K RD KT LQE+ K+ Sbjct: 141 LADAVEAVIGAYYLDSGYSAAEKLVLELIVPEIQKVLQN-KHHRDYKTLLQEFYQKKYKE 199 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL--APAQGMDCSKRAAEQVAA 216 P Y++ R+GPDHD F V V + + PA G + K+ AEQ AA Sbjct: 200 CPVYELVKRTGPDHDRTFWVSVHLHSVTYGPASGKN--KKEAEQSAA 244 >gi|219848618|ref|YP_002463051.1| Ribonuclease III [Chloroflexus aggregans DSM 9485] gi|254807244|sp|B8GAM6|RNC_CHLAD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|219542877|gb|ACL24615.1| Ribonuclease III [Chloroflexus aggregans DSM 9485] Length = 229 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 6/199 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH------SYQESYERLEFLGDRILGLLISTL 58 R + LE+ +G F +R LL+ AL H S+ + S ERLEFLGD +L + +T Sbjct: 4 RLAELERALGITFRDRKLLQTALMHRSLFNEQPHLLSNLSDNERLEFLGDSVLHFVTTTW 63 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF F E L+ +LVS + ++ A L+L + +S + + AD+ Sbjct: 64 LFQQFPHQNESTLTSWRAALVSTKGLAECAATLNLGQYAFLSRGEDTPKGRQRSKLLADL 123 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLD G+E A F++ + +R D T LQE ++ P+Y + Sbjct: 124 FEAVIGAIYLDQGLEAARAFIEPFLHERIGTLQTAVLDPTTRLQEIVQSRHKQLPKYYLI 183 Query: 179 FRSGPDHDPRFTVVVEISG 197 GPDH + + V + G Sbjct: 184 DERGPDHQREYVMAVTVEG 202 >gi|319639176|ref|ZP_07993927.1| ribonuclease 3 [Neisseria mucosa C102] gi|317399360|gb|EFV80030.1| ribonuclease 3 [Neisseria mucosa C102] Length = 239 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 18/225 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + ++KR+GY F N LL++ALTH S + + E R EF+GD IL ++ +LF+ F Sbjct: 11 HRAIQKRLGYEFRNMELLQQALTHRSYNAKHNE---RFEFVGDSILNYSVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS +LV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LSEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRA----LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + D A V + +R L GK +D+KT LQE A+ P+Y++ ++ Sbjct: 128 VSFDADFSAAEKVVRHLFAERVKRADLNIGK--KDSKTALQEALQARRFALPKYRIEEQA 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDC-----SKRAAEQVAAAEVLK 221 D F + ++ L G C S++ AEQ AA E L+ Sbjct: 186 EQTADAMFVISCDLGEL----GFICNARGSSRKVAEQKAACEALE 226 >gi|296328081|ref|ZP_06870615.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154857|gb|EFG95640.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 234 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 106/194 (54%), Gaps = 12/194 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ ++ Sbjct: 7 LEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLYKNYK 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS---FMTSIQADVVES 121 +A EG ++ +VS ++++R++ + F+ +S R +V S SI AD E+ Sbjct: 67 NASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLS---RGEVMSGGRNRESILADSFEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++ A+Y+D ++ A F + KQ ++ + D K+ LQE+ +F P Y++ Sbjct: 124 ILGAVYIDSNLDEARVFALSHIKQYIDHIEENEDILDFKSILQEYVQKEFKTVPTYELVA 183 Query: 180 RSGPDHDPRFTVVV 193 GPDH F + V Sbjct: 184 ERGPDHMKEFEIQV 197 >gi|241758554|ref|ZP_04756671.1| ribonuclease III [Neisseria flavescens SK114] gi|241321297|gb|EER57457.1| ribonuclease III [Neisseria flavescens SK114] Length = 239 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 18/225 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + ++KR+GY F N LL++ALTH S + + E R EF+GD IL ++ +LF+ F Sbjct: 11 HRAIQKRLGYEFRNMELLQQALTHRSYNAKHNE---RFEFVGDSILNYSVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS +LV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LSEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRA----LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + D A V + +R L GK +D+KT LQE A+ P+Y++ ++ Sbjct: 128 VSFDADFSAAEKVVRHLFAERVKRADLNIGK--KDSKTALQEALQARRFALPKYRIEEQA 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDC-----SKRAAEQVAAAEVLK 221 D F + ++ L G C S++ AEQ AA E L+ Sbjct: 186 EQTADAMFVISCDLGEL----GFICNARGSSRKVAEQKAACEALE 226 >gi|298346956|ref|YP_003719643.1| ribonuclease III [Mobiluncus curtisii ATCC 43063] gi|298237017|gb|ADI68149.1| ribonuclease III [Mobiluncus curtisii ATCC 43063] Length = 249 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/196 (34%), Positives = 102/196 (52%), Gaps = 10/196 (5%) Query: 22 LLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 LL A+TH S +H + ++ ERLEFLGD +L ++++ LF +F EGEL+ Sbjct: 36 LLVVAMTHRSFAHEHGKTGSTGTNERLEFLGDAVLQIVVTEYLFRNFPDVPEGELAPMRA 95 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + VS ++VAR L L +I + + SI +D +E+LI A YL G+E Sbjct: 96 ATVSQTPLAEVARRLHLGDYILLGIGEDRQGGREKDSILSDTLEALIGASYLTSGLESTR 155 Query: 137 TFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 ++++ + R L++ R D KT L E+A A PEY V SGPDH FT + Sbjct: 156 VTIERHLR-RYLRNAPRRAVGMDWKTHLSEFAAANSLGEPEYVVQG-SGPDHARVFTAQI 213 Query: 194 EISGLAPAQGMDCSKR 209 I+G +G SK+ Sbjct: 214 RIAGEVLGEGQGTSKK 229 >gi|167581151|ref|ZP_02374025.1| ribonuclease III [Burkholderia thailandensis TXDOH] Length = 464 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 7/193 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F E Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFSKLDE 57 Query: 69 GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++I A++ Sbjct: 58 GDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVF 116 Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDGG E A + + + + +DAKT LQE+ P Y V G H Sbjct: 117 LDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAH 176 Query: 186 DPRFTVVVEISGL 198 + +F V + L Sbjct: 177 NQQFEVECTVPKL 189 >gi|228477722|ref|ZP_04062351.1| ribonuclease III [Streptococcus salivarius SK126] gi|228250611|gb|EEK09822.1| ribonuclease III [Streptococcus salivarius SK126] Length = 229 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 7/205 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ G F+ + LLE A TH+S ++ ++ ERLEFLGD L L+IS L+ + Sbjct: 8 LEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVISVYLYKRYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGE+S +++V E+ + + +IR+ K +I D+ E+ + Sbjct: 68 NKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWEAFLG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G+ F+++ + K G F R D KT LQE V Y V SG Sbjct: 128 ALYLDQGLPAVEKFLNQVMIPQVEK-GNFDRVTDYKTALQERLQVNGTVDITYTVIDESG 186 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCS 207 P H FT+ V + G + G+ S Sbjct: 187 PAHAKEFTMQVAVDGKELSTGLGKS 211 >gi|313768337|ref|YP_004062017.1| hypothetical protein MpV1_134 [Micromonas sp. RCC1109 virus MpV1] gi|312599033|gb|ADQ91057.1| hypothetical protein MpV1_134 [Micromonas sp. RCC1109 virus MpV1] Length = 235 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/213 (31%), Positives = 106/213 (49%), Gaps = 10/213 (4%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSA 66 E+ +G N L +KA TH S Y+ ES+E LEF+GD +LG +I+ LF+ F+S Sbjct: 11 EQLVGTKIKNLDLYQKAFTHKSALKEYEQFTESFETLEFIGDSVLGFVITKFLFDRFESR 70 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG L+ LV ET +++A L L + + ++ + I DV E+LI A+ Sbjct: 71 QEGFLTKARTKLVRGETLARIANALGLNELVIMDEKGMRNGWNNNPKILEDVFEALIGAI 130 Query: 127 YLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 Y+D G+ A F+ + ++ L S + K L PEY+V Sbjct: 131 YMDIGLIHAKEFILRIYQDPKLVDLNSIMVDDNYKDHLMRHCQVNNWQLPEYRV----AA 186 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 H+ F + + I+ L ++G+ SK+ AEQ AA Sbjct: 187 HHEGLFYIDIYINNLFCSRGVAKSKKQAEQNAA 219 >gi|304389333|ref|ZP_07371298.1| ribonuclease III [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315655502|ref|ZP_07908401.1| ribonuclease III [Mobiluncus curtisii ATCC 51333] gi|315656591|ref|ZP_07909478.1| ribonuclease III [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304327451|gb|EFL94684.1| ribonuclease III [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315490157|gb|EFU79783.1| ribonuclease III [Mobiluncus curtisii ATCC 51333] gi|315492546|gb|EFU82150.1| ribonuclease III [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 249 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/196 (34%), Positives = 102/196 (52%), Gaps = 10/196 (5%) Query: 22 LLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 LL A+TH S +H + ++ ERLEFLGD +L ++++ LF +F EGEL+ Sbjct: 36 LLVVAMTHRSFAHEHGKTGSTGTNERLEFLGDAVLQIVVTEYLFRNFPDVPEGELAPMRA 95 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + VS ++VAR L L +I + + SI +D +E+LI A YL G+E Sbjct: 96 ATVSQTPLAEVARRLHLGDYILLGIGEDRQGGREKDSILSDTLEALIGASYLTSGLESTR 155 Query: 137 TFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 ++++ + R L++ R D KT L E+A A PEY V SGPDH FT + Sbjct: 156 VTIERHLR-RYLRNAPRRAVGMDWKTHLSEFAAANSLGEPEYVVQG-SGPDHARVFTAQI 213 Query: 194 EISGLAPAQGMDCSKR 209 I+G +G SK+ Sbjct: 214 RIAGEVLGEGQGTSKK 229 >gi|237743502|ref|ZP_04573983.1| ribonuclease III [Fusobacterium sp. 7_1] gi|260496871|ref|ZP_05815991.1| ribonuclease III [Fusobacterium sp. 3_1_33] gi|229433281|gb|EEO43493.1| ribonuclease III [Fusobacterium sp. 7_1] gi|260196613|gb|EEW94140.1| ribonuclease III [Fusobacterium sp. 3_1_33] Length = 234 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 105/194 (54%), Gaps = 12/194 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ + Sbjct: 7 LEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLYKSYK 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS---FMTSIQADVVES 121 +A EG ++ +VS ++++R++ + F+ +S R +V S SI AD E+ Sbjct: 67 NASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLS---RGEVMSGGRNRESILADSFEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++ A+Y+D ++ A F + KQ ++ + D K+ LQE+ +F P YK+ Sbjct: 124 ILGAVYIDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPTYKLIA 183 Query: 180 RSGPDHDPRFTVVV 193 GPDH F + V Sbjct: 184 ERGPDHMKEFEIQV 197 >gi|257138458|ref|ZP_05586720.1| ribonuclease III [Burkholderia thailandensis E264] Length = 464 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 7/193 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F E Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFSKLDE 57 Query: 69 GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++I A++ Sbjct: 58 GDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVF 116 Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDGG E A + + + + +DAKT LQE+ P Y V G H Sbjct: 117 LDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAH 176 Query: 186 DPRFTVVVEISGL 198 + +F V + L Sbjct: 177 NQQFEVECTVPKL 189 >gi|226199978|ref|ZP_03795528.1| ribonuclease III [Burkholderia pseudomallei Pakistan 9] gi|225928034|gb|EEH24071.1| ribonuclease III [Burkholderia pseudomallei Pakistan 9] Length = 462 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 7/193 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F E Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFGKLDE 57 Query: 69 GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++I A++ Sbjct: 58 GDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVF 116 Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDGG E A + + + + +DAKT LQE+ P Y V G H Sbjct: 117 LDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAH 176 Query: 186 DPRFTVVVEISGL 198 + +F V + L Sbjct: 177 NQQFEVECTVPKL 189 >gi|284799722|ref|ZP_05984688.2| ribonuclease III [Neisseria subflava NJ9703] gi|284797336|gb|EFC52683.1| ribonuclease III [Neisseria subflava NJ9703] Length = 296 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 18/225 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + ++KR+GY F N LL++ALTH S + + E R EF+GD IL ++ +LF+ F Sbjct: 11 HRAIQKRLGYEFRNMELLQQALTHRSYNAKHNE---RFEFVGDSILNYSVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS +LV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LSEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRA----LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + D A V + +R L GK +D+KT LQE A+ P+Y++ ++ Sbjct: 128 VSFDADFSAAEKVVRHLFAERVKRADLNIGK--KDSKTALQEALQARRFALPKYRIEEQA 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDC-----SKRAAEQVAAAEVLK 221 D F + ++ L G C S++ AEQ AA E L+ Sbjct: 186 EQTADAMFVISCDLGEL----GFICNARGSSRKVAEQKAACEALE 226 >gi|304440214|ref|ZP_07400104.1| ribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371263|gb|EFM24879.1| ribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640] Length = 226 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 114/231 (49%), Gaps = 18/231 (7%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M L+Y I Y F N L ALTHSS S+ +E S ERLEFLGD +L L++ Sbjct: 1 MKNLKYLN----ISYEFKNEELFRTALTHSSYSNENKEKCKYSNERLEFLGDAVLDLVVG 56 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 F F +EG+LS+ +V + +++A++++L I + K+ SI A Sbjct: 57 EYFFKQF-KVREGQLSMMRAKVVKESSLAKIAKKINLGEMILLGKGEEKNNGREKLSILA 115 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQE---WAHAKFGV 171 D +E+LI A+YLD +VA F+ + K+ + D K+ LQE AH + Sbjct: 116 DSLEALIGAIYLDSSFDVAKEFILDIMSEELEKAHESSYLVDYKSRLQEVCQMAH----L 171 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 EY + +GP + F V + G +G S + +EQ+AA + L + Sbjct: 172 NIEYVLEKTNGPLNSRVFYSKVIVDGKVFGRGEGNSIKKSEQMAAKDALSK 222 >gi|327441090|dbj|BAK17455.1| dsRNA-specific ribonuclease [Solibacillus silvestris StLB046] Length = 253 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 104/218 (47%), Gaps = 7/218 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLF 60 ++ LE + F N+ LL +A THSS + ++ ERLEFLGD +L L +S LF Sbjct: 22 QFEILENEMNIHFQNKDLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EGEL+ S+V + A EL+ F+ + ++ ADV E Sbjct: 82 EKFPHMSEGELTKLRASIVCEPSLVVFANELNFGQFVLLGKGEELTGGRERPALLADVFE 141 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 S + ALYLD G+EV F+++ + ++ G F D K++LQE Y++ Sbjct: 142 SFVGALYLDQGLEVVVAFLERVVFPK-VEVGAFSHVMDFKSQLQEIIQQTNNGLLNYEIV 200 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GP H+ F V ++ G SK+ AEQ AA Sbjct: 201 DEKGPAHNRTFVSRVLLNSQELGIGRGKSKKEAEQQAA 238 >gi|297584006|ref|YP_003699786.1| ribonuclease III [Bacillus selenitireducens MLS10] gi|297142463|gb|ADH99220.1| ribonuclease III [Bacillus selenitireducens MLS10] Length = 261 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 7/226 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 +Y K + + + ++ +A THSS + ++ + ERLEFLGD +L L IS LF Sbjct: 28 KYKQFLKTLHVPYQDDNVFIQAFTHSSYVNEHRIRPHDDNERLEFLGDAVLELAISQYLF 87 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F+ EGE++ ++V + +++A L+ ++ + ++ ADV E Sbjct: 88 KLFEQMSEGEMTKLRAAIVCEPSLAKLADSLEFGDYVLLGKGEEMTGGRKRPALLADVFE 147 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 + I ALY+D G+E F+++Y + + G F D K++LQE+ + +Y++ Sbjct: 148 AFIGALYVDLGMEAVYDFLERYVYPK-IHDGSFSHMMDFKSQLQEFIQRENQGQVQYRIV 206 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G+ SK+ AEQ+AA E LK+ G Sbjct: 207 EEKGPAHAREFVSEVMLDDDQLGTGVGKSKKEAEQMAAQEALKKLG 252 >gi|312863862|ref|ZP_07724100.1| ribonuclease III [Streptococcus vestibularis F0396] gi|322516541|ref|ZP_08069457.1| ribonuclease III [Streptococcus vestibularis ATCC 49124] gi|311101398|gb|EFQ59603.1| ribonuclease III [Streptococcus vestibularis F0396] gi|322124929|gb|EFX96349.1| ribonuclease III [Streptococcus vestibularis ATCC 49124] Length = 229 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 7/205 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ G F + LLE A TH+S ++ ++ ERLEFLGD L L+IS L+ + Sbjct: 8 LEQDFGIVFNQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVISVYLYKRYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGE+S +++V E+ + ++ +IR+ K +I D+ E+ + Sbjct: 68 NKPEGEMSKMRSTIVREESLAGFSKACGFEQYIRLGKGEEKSGGRERATILGDLWEAFLG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G+ F+++ + K G F R D KT LQE V Y V SG Sbjct: 128 ALYLDQGLPAVEKFLNQVMIPQVEK-GNFDRVTDYKTALQERLQVNGTVDITYTVIDESG 186 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCS 207 P H FT+ V + G + G+ S Sbjct: 187 PAHAKEFTMQVAVDGKELSTGLGKS 211 >gi|256846347|ref|ZP_05551804.1| ribonuclease III [Fusobacterium sp. 3_1_36A2] gi|256718116|gb|EEU31672.1| ribonuclease III [Fusobacterium sp. 3_1_36A2] Length = 234 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 106/194 (54%), Gaps = 12/194 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ ++ Sbjct: 7 LEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLYKNYK 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS---FMTSIQADVVES 121 +A EG ++ +VS ++++R++ + F+ +S R +V S SI AD E+ Sbjct: 67 NASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLS---RGEVMSGGRNRESILADSFEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++ A+Y+D ++ A F + KQ ++ + D K+ LQE+ +F P Y++ Sbjct: 124 ILGAVYMDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPTYELIA 183 Query: 180 RSGPDHDPRFTVVV 193 GPDH F + V Sbjct: 184 ERGPDHMKEFEIQV 197 >gi|113475790|ref|YP_721851.1| RNAse III [Trichodesmium erythraeum IMS101] gi|110166838|gb|ABG51378.1| RNAse III [Trichodesmium erythraeum IMS101] Length = 233 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 16/225 (7%) Query: 17 FANRSLLEKALTHSS-ISHSY--QESYERLEFLGDRILGLLISTLLFNHFD---SAKEGE 70 F N+ LL++ALTH S ++ +Y +E E LEF+GD +LG L+ LL+ + + K E Sbjct: 8 FKNQKLLQQALTHRSYLNENYGDEEDNESLEFIGDALLGFLVGELLYRRYKEEHNLKPKE 67 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ + LV + ++ A +L + + +R+ KD ++ +D E++I A +LD Sbjct: 68 LTRIRSLLVDEKQLAKFAVQLGIGAKMRLGKGAEKDGGRKNPALLSDTFEAIIGAYFLDS 127 Query: 131 GIEVAGTFVDKYWKQRALK----------SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + F+ + ++ A K D K + Q+WA AKFG P Y+ Sbjct: 128 NLTKVKPFIKRLFEPVADNIILPNYGDNSQPKDLVDTKGKFQQWALAKFGENPRYESNNG 187 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G DH FT V + G G K+ AE+ AA + LK+ G+ Sbjct: 188 EGLDHAKIFTAEVRVRGKLYGVGKGNRKQEAEKSAAEKALKKVGL 232 >gi|34764313|ref|ZP_00145147.1| Ribonuclease III [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741211|ref|ZP_04571692.1| ribonuclease III [Fusobacterium sp. 4_1_13] gi|27885913|gb|EAA23255.1| Ribonuclease III [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229430743|gb|EEO40955.1| ribonuclease III [Fusobacterium sp. 4_1_13] Length = 234 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 106/194 (54%), Gaps = 12/194 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ ++ Sbjct: 7 LEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLYKNYK 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS---FMTSIQADVVES 121 +A EG ++ +VS ++++R++ + F+ +S R +V S SI AD E+ Sbjct: 67 NASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLS---RGEVMSGGRNRESILADSFEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++ A+Y+D ++ A F + KQ ++ + D K+ LQE+ +F P Y++ Sbjct: 124 ILGAVYMDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPTYELIA 183 Query: 180 RSGPDHDPRFTVVV 193 GPDH F + V Sbjct: 184 ERGPDHMKEFEIQV 197 >gi|224542836|ref|ZP_03683375.1| hypothetical protein CATMIT_02028 [Catenibacterium mitsuokai DSM 15897] gi|224524248|gb|EEF93353.1| hypothetical protein CATMIT_02028 [Catenibacterium mitsuokai DSM 15897] Length = 230 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/217 (32%), Positives = 107/217 (49%), Gaps = 12/217 (5%) Query: 11 KRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 KRIG L ++A THSS S+++ YERLEF+GD +L L +S +F K Sbjct: 15 KRIG-------LYKEAFTHSSYANESNAHIPDYERLEFMGDAVLQLFVSEFIFALHPEYK 67 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+L+ + LV E+ ++ + EL L + + K S+ A++ ES I ALY Sbjct: 68 EGQLTQLRSKLVREESLARFSEELHLGELLYLGVGEEKSGGRHRESVLANIYESFIGALY 127 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD G E ++K + + +F D KT+LQE + T Y V +GP + Sbjct: 128 LDCGKEQVIRILEKTIFKHVNEVNEFDDITDYKTKLQELVQSDDRKTVSYHVKSSTGPAN 187 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F + V + + G SK+ AEQ AA + L + Sbjct: 188 APEFVIEVILDDMILGTGKGTSKKRAEQHAAKDALMK 224 >gi|229918600|ref|YP_002887246.1| ribonuclease III [Exiguobacterium sp. AT1b] gi|229470029|gb|ACQ71801.1| ribonuclease III [Exiguobacterium sp. AT1b] Length = 259 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 109/221 (49%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +LE+R+ F+N LL +A THSS ++ ERLEFLGD +L L +S L+ Sbjct: 31 FKSLEERLDVQFSNHDLLMQAFTHSSYVNEQRGLRKDNERLEFLGDAVLELTVSRFLYET 90 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EGEL+ ++V + A + FI + ++ ADV ES Sbjct: 91 YPERSEGELTKLRAAIVCEPSLVNFAEAFAFSDFILLGKGEELTGGRKRPALLADVFESY 150 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTP-EYKVTF 179 I ALYLD GIE F+ + + L +G F + D K++LQE + G+ P Y++ Sbjct: 151 IGALYLDQGIEAVERFLAEAVFPKVL-AGVFEEQTDFKSQLQESVQRE-GLGPVSYEIIE 208 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP H F +S +G+ SK+ AEQ+AA E L Sbjct: 209 ERGPAHSREFVAHARLSDDIVGEGVGRSKKEAEQLAAKEAL 249 >gi|327284145|ref|XP_003226799.1| PREDICTED: ribonuclease 3-like [Anolis carolinensis] Length = 1323 Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 113/228 (49%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1055 KLTMFEDAIGVTFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1114 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + F +++D K + T AD++ES Sbjct: 1115 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVALRTKTLADLLESF 1173 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1174 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1232 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1233 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMCAAMDALEK 1280 Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 9/108 (8%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A+ Sbjct: 924 SRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAK 978 Query: 90 ELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 +L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 979 KLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1024 >gi|251781986|ref|YP_002996288.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390615|dbj|BAH81074.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 230 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 108/210 (51%), Gaps = 7/210 (3%) Query: 17 FANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F + +LLE A TH+S ++ ++ ERLEFLGD +L L+IS LF + EG++S Sbjct: 16 FEDHTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMS 75 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + +V E+ + +R ++I++ K +I D+ E+ + AL LD G+ Sbjct: 76 KLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGV 135 Query: 133 EVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 + F+ + + K G F +D KT LQE +K + +Y+V GP H +F Sbjct: 136 DEVRRFLQQVMIPQVEK-GNFEKVKDYKTCLQELLQSKGDIAIDYQVISEKGPAHAKQFE 194 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V V ++ ++G+ SK+ AEQ AA L Sbjct: 195 VAVFVNEEVLSKGLGKSKKMAEQDAAKNAL 224 >gi|256027058|ref|ZP_05440892.1| ribonuclease III [Fusobacterium sp. D11] gi|289765042|ref|ZP_06524420.1| ribonuclease III [Fusobacterium sp. D11] gi|289716597|gb|EFD80609.1| ribonuclease III [Fusobacterium sp. D11] Length = 234 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 105/194 (54%), Gaps = 12/194 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ + Sbjct: 7 LEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLYKSYK 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS---FMTSIQADVVES 121 +A EG ++ +VS ++++R++ + F+ +S R +V S SI AD E+ Sbjct: 67 NASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLS---RGEVMSGGRNRESILADSFEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++ A+Y+D ++ A F + KQ ++ + D K+ LQE+ +F P YK+ Sbjct: 124 ILGAVYIDSNLDDARNFTLSHIKQYIDHIEEDEDILDFKSILQEYVQKEFRTVPTYKLIA 183 Query: 180 RSGPDHDPRFTVVV 193 GPDH F + V Sbjct: 184 ERGPDHMKEFEIQV 197 >gi|170079136|ref|YP_001735774.1| ribonuclease III [Synechococcus sp. PCC 7002] gi|169886805|gb|ACB00519.1| ribonuclease III [Synechococcus sp. PCC 7002] Length = 258 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 97/194 (50%), Gaps = 15/194 (7%) Query: 16 AFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F LL +ALTH S ++ E+ ERLEFLGD +L ++ LL+ + +EGELS Sbjct: 6 PFQRSPLLLQALTHRSFANEQPETIQDNERLEFLGDAVLKFIMGKLLYERYPDFQEGELS 65 Query: 73 -VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 +R + + ++ A+ L L +R+ K+ I ++ E+++ A +LD G Sbjct: 66 RLRASLENNRHQLAEFAQVLGLDQILRLGKGAEKEGARQNPEILSNTFEAVVGAYFLDAG 125 Query: 132 IEVAGTFV--------DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 IE A FV D+ +Q S ++ K +LQEWA A G P+YK SG Sbjct: 126 IEAAIAFVETLVIPVADRLVQQ---PSDPLAQNFKGQLQEWALANHGEIPKYKTLNESGA 182 Query: 184 DHDPRFTVVVEISG 197 DH FTV V + G Sbjct: 183 DHAKTFTVAVYLQG 196 >gi|209525933|ref|ZP_03274467.1| Ribonuclease III [Arthrospira maxima CS-328] gi|209493610|gb|EDZ93931.1| Ribonuclease III [Arthrospira maxima CS-328] Length = 395 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 104/211 (49%), Gaps = 21/211 (9%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYER----LEFLGDRILGLLISTLLFNH 62 S L K+I F N LL ALTHSS + + + +R LEFLGD +L + L+N Sbjct: 167 SKLLKKI--PFQNVDLLNHALTHSSYLYEHPKEVKRDNELLEFLGDSVLNFISGEYLYNK 224 Query: 63 FDSAK-EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + S + EG+L+ ++LV + ++ A +L L +IR+ + S+ ++ E+ Sbjct: 225 YKSVRNEGDLTKLRSALVENKQLAKFAEKLALQQYIRLGKG-----AALNPSLLSNTFEA 279 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--------SGKFRRDAKTELQEWAHAKFG-VT 172 +I A +LD G++ F+ + + SGK D+K LQEW G +T Sbjct: 280 MIGAYFLDSGMKKVQEFLQPLFDSVIAEITSLSQGNSGKVAADSKNRLQEWVQKNIGPIT 339 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 PEY+ G DH +FTV V + G +G Sbjct: 340 PEYETIKEEGADHKKQFTVQVMVQGKVYGEG 370 >gi|121533802|ref|ZP_01665629.1| Ribonuclease III [Thermosinus carboxydivorans Nor1] gi|121307793|gb|EAX48708.1| Ribonuclease III [Thermosinus carboxydivorans Nor1] Length = 243 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 109/220 (49%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 L +G +F + LL +AL H+S ++ + E ERLEFLGD +L L+IS L+ +F Sbjct: 16 LAASLGISFNDLGLLHQALVHTSYANEVKGGVEHNERLEFLGDAVLELIISEYLYRNFPE 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL+ LV + +Q A L L ++ + TSI AD E++I A Sbjct: 76 LPEGELTKARARLVCEPSLAQCASRLGLGKYLLLGKGEAVSGGRERTSILADAFEAVIGA 135 Query: 126 LYLDGGIEVAGTFVDKYWKQR-AL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLDGG+ A FV + + AL + D KT LQE Y+V G Sbjct: 136 IYLDGGVSAATNFVLNHLHEDLALIWRGDYVFYDYKTVLQEVVQQAGECKISYEVVAEYG 195 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 PDH+ F V V ++ G +K+ AEQ AA E L++ Sbjct: 196 PDHNKTFEVSVLVNHQHLGAGSGKNKKEAEQNAAKEALQK 235 >gi|330836489|ref|YP_004411130.1| RNAse III [Spirochaeta coccoides DSM 17374] gi|329748392|gb|AEC01748.1| RNAse III [Spirochaeta coccoides DSM 17374] Length = 256 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 9/215 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +K G F + LL A TH S S ++ ERLEFLGD +LG ++S LF + + Sbjct: 28 FQKNAGIKFHSLELLNLAFTHRSFFNESRHEVDNNERLEFLGDSVLGFMVSEWLFLNLPA 87 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+ S + +V+ ++ +++A L + F+ + + +I AD +E++ AA Sbjct: 88 RHEGDFSKIRSYVVNEDSLAEIALSLHVDRFLIIGKGEEMNGGRTKKTILADCMEAIFAA 147 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD G++ + ++ + + ++D KT LQE ++ P Y++ SGP Sbjct: 148 YYLDAGLKPVQELILRHLVPAIMVVLDDRHKKDYKTLLQEIIQKRYHKYPVYELLRTSGP 207 Query: 184 DHDPRFTVVVEISG--LAPAQGMDCSKRAAEQVAA 216 +HD F V V + G PA G +K+ AEQ AA Sbjct: 208 EHDRTFWVQVNVVGNIFGPASG--ANKKEAEQNAA 240 >gi|322411350|gb|EFY02258.1| ribonuclease III [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 230 Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 109/210 (51%), Gaps = 7/210 (3%) Query: 17 FANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F +++LLE A TH+S ++ ++ ERLEFLGD +L L+IS LF + EG++S Sbjct: 16 FEDQTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMS 75 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + +V E+ + +R ++I++ K +I D+ E+ + AL LD G+ Sbjct: 76 KLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGV 135 Query: 133 EVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 + F+ K ++ G F +D KT LQE +K + +Y+V GP H +F Sbjct: 136 DEVRRFL-KLVMIPQVEKGNFEKVKDYKTCLQELLQSKGDIAIDYQVISEKGPAHAKQFE 194 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V V ++ ++G+ SK+ AEQ AA L Sbjct: 195 VAVFVNEEVLSKGLGKSKKMAEQDAAKNAL 224 >gi|222100439|ref|YP_002535007.1| Ribonuclease 3 [Thermotoga neapolitana DSM 4359] gi|254807907|sp|B9K9K8|RNC_THENN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|221572829|gb|ACM23641.1| Ribonuclease 3 [Thermotoga neapolitana DSM 4359] Length = 240 Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 11/218 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTLLFN 61 L+KR+G F + LL +AL HSS ++ + ES E+LEFLGD +L L + +L+ Sbjct: 12 LQKRLGVLFNDEELLFRALCHSSYANEQKQAGREDVESNEKLEFLGDAVLELFVCEILYR 71 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + A+ G+L+ +++ S E ++V+R L+L ++ + K SI AD E+ Sbjct: 72 KYPEAEVGDLARVKSAVASEEVLARVSRRLELGKYLFLGKGEEKTGGRERDSILADAFEA 131 Query: 122 LIAALYLDGGIE-VAGTFVDKY--WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 L+AALYLD G + + F D++ + ++ +K G+ D KT LQE + PEY + Sbjct: 132 LLAALYLDQGYQKIKDLFEDEFESYIEKIMK-GEILFDYKTALQEIVQREHKTPPEYVLV 190 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + F V V ++ A G +K+ AE+ AA Sbjct: 191 RTEKNGSEKLFVVEVRVNDETLAVGRGRTKKEAEKDAA 228 >gi|306836417|ref|ZP_07469394.1| ribonuclease III [Corynebacterium accolens ATCC 49726] gi|304567698|gb|EFM43286.1| ribonuclease III [Corynebacterium accolens ATCC 49726] Length = 256 Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 8/225 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLL 59 +A+ +S L + +G A +L ALTH S ++ + + ERLEFLGD +LGL ++ L Sbjct: 18 AAVDHSPLLESLGVALEPENL-RLALTHRSFANENGHLPNNERLEFLGDAVLGLSVAAKL 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S E ++S S+VS S +ARE++L I + + SI AD Sbjct: 77 YVTYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTT 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E++ A+Y + G E A + + + ++ A SG+ D KT LQE P Y Sbjct: 137 EAIFGAIYREHGFETARDVILRLFAEKIDNASVSGR-HLDWKTTLQELCAELKAPMPVYS 195 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GP+HD F+ V ++GL+ G +K+ AEQ AA E + Sbjct: 196 AT-ATGPEHDQTFSAVATVAGLSVGNGQGHNKKLAEQQAAQEACQ 239 >gi|229098318|ref|ZP_04229265.1| Ribonuclease 3 [Bacillus cereus Rock3-29] gi|229104411|ref|ZP_04235080.1| Ribonuclease 3 [Bacillus cereus Rock3-28] gi|229117335|ref|ZP_04246713.1| Ribonuclease 3 [Bacillus cereus Rock1-3] gi|228666235|gb|EEL21699.1| Ribonuclease 3 [Bacillus cereus Rock1-3] gi|228679109|gb|EEL33317.1| Ribonuclease 3 [Bacillus cereus Rock3-28] gi|228685216|gb|EEL39147.1| Ribonuclease 3 [Bacillus cereus Rock3-29] Length = 245 Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEKIGITFTDEKLLTQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G+E F+ + + + G F D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++ +A G SK+ AEQ AAAE LK+ Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240 >gi|167837348|ref|ZP_02464231.1| ribonuclease III [Burkholderia thailandensis MSMB43] Length = 452 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 99/193 (51%), Gaps = 7/193 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E R+ Y F N LL +ALTH S S ++ E RLEFLGD +L ++ LLF F E Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFGKLDE 57 Query: 69 GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G+LS VR N LV ++ ++A+ L+++ +R+ + SI AD E++I A++ Sbjct: 58 GDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVF 116 Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +DGG E A + + + + +DAKT LQE+ P Y V G H Sbjct: 117 VDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAH 176 Query: 186 DPRFTVVVEISGL 198 + +F V + L Sbjct: 177 NQQFEVECTVPKL 189 >gi|78186018|ref|YP_374061.1| ribonuclease III [Chlorobium luteolum DSM 273] gi|90101633|sp|Q3B6L3|RNC_PELLD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|78165920|gb|ABB23018.1| RNAse III [Chlorobium luteolum DSM 273] Length = 276 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 100/210 (47%), Gaps = 15/210 (7%) Query: 22 LLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 L ALTH S+ H S +RLEFLGD +LGL+IS L+ F EGELS Sbjct: 47 LYATALTHRSMVHDTTAPEITRSNQRLEFLGDSVLGLIISEYLYRRFPEGTEGELSSYRA 106 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +V+ ++ + AR LDL + + + TS AD E+L A+YLD G++ Sbjct: 107 KIVNGKSLAGFARNLDLGIHLIIGESADQQRIRTSTSTLADAFEALTGAIYLDRGLDAVR 166 Query: 137 TFVDKYWKQRALKSGKF------RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 F++ ++ + S F + K+ L E + P Y V G +H+ FT Sbjct: 167 EFIE----EQIIDSPAFEAMVSTENNHKSRLIEHTQSHQLPPPVYTVLSEEGAEHEKTFT 222 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + V +G +G K+ AEQ+AA E + Sbjct: 223 IEVSCNGRRLGRGTALRKKDAEQLAAEEAM 252 >gi|227503342|ref|ZP_03933391.1| ribonuclease III [Corynebacterium accolens ATCC 49725] gi|227075845|gb|EEI13808.1| ribonuclease III [Corynebacterium accolens ATCC 49725] Length = 256 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 114/225 (50%), Gaps = 8/225 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLL 59 +A+ +S L + +G A +L ALTH S ++ + + ERLEFLGD +LGL ++ L Sbjct: 18 AAVDHSPLLESLGVALEPENL-RLALTHRSFANENGHLPNNERLEFLGDAVLGLSVAAKL 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S E ++S S+VS S +ARE++L I + + SI AD Sbjct: 77 YVTYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTT 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E++ A+Y + G E A + + + ++ A SG+ D KT LQE P Y Sbjct: 137 EAIFGAIYREHGFETARDVILRLFAEKIDNASVSGR-HLDWKTTLQELCAELKAPMPVYS 195 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GP+HD F+ V ++GL G +K+ AEQ AA E + Sbjct: 196 AT-ATGPEHDQTFSAVATVAGLTVGNGQGHNKKLAEQQAAQEACQ 239 >gi|121996844|ref|YP_001001631.1| ribonuclease III [Halorhodospira halophila SL1] gi|121588249|gb|ABM60829.1| RNAse III [Halorhodospira halophila SL1] Length = 234 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 106/215 (49%), Gaps = 6/215 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++R+ Y F L++A+TH S + E RLEFLGD +L +++ +F+ + E Sbjct: 7 LQQRLDYQFLELERLQEAVTHRSAGGRHNE---RLEFLGDSVLNFVVAHEVFHRRPTDSE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS SLV+ + + +AR+++L +R+ K SI AD +E++ A+YL Sbjct: 64 GTLSRLRASLVNRSSLAAIARDIELGDHLRLGGGELKSGGHRRDSILADALEAVFGAVYL 123 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G E A + ++ R +L +D KT LQE + P Y+V G H Sbjct: 124 DAGFETAARVITGLYRSRLESLPDKAVLKDPKTRLQEVLQSTRRPLPGYQVLDVRGRAHH 183 Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220 RF V +S G S+R AEQ AA +L Sbjct: 184 QRFQVECRLSDSEQTTLGEAGSRRQAEQRAAEAML 218 >gi|312984414|ref|ZP_07791749.1| ribonuclease III [Lactobacillus crispatus CTV-05] gi|310894189|gb|EFQ43276.1| ribonuclease III [Lactobacillus crispatus CTV-05] Length = 229 Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 11/213 (5%) Query: 17 FANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N LLE+A THSS S+ + YE+LEFLGD +L L +S ++ H+ EGEL+ Sbjct: 18 FNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAVSNYVYLHYPKLNEGELT 77 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +++V E S+ A E I + + K ++ DV E+ AL+LD G+ Sbjct: 78 RLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLLEDVFEAFNGALFLDQGM 137 Query: 133 EVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRF 189 F+ + G+F RD KT+LQE V EY V S P H F Sbjct: 138 PAVEHFL-HLTVYPLIDKGEFDDSRDYKTDLQEVLQQDGPVNIEYTVISESQLPSH---F 193 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V ++I+G ++G +K+AAEQ AA L++ Sbjct: 194 VVELKINGKVESKGEGHNKKAAEQQAAKVALQK 226 >gi|145219011|ref|YP_001129720.1| RNAse III [Prosthecochloris vibrioformis DSM 265] gi|145205175|gb|ABP36218.1| RNAse III [Chlorobium phaeovibrioides DSM 265] Length = 259 Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 15/206 (7%) Query: 26 ALTHSSISHS-----YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 ALTH S H S +RLEFLGD ILGL+I+ LF + EGELS +V+ Sbjct: 51 ALTHRSAVHDPSTPLNTHSNQRLEFLGDAILGLVITDYLFRELPDSPEGELSNTRAKIVN 110 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 ++ + AR + + + + S AD +E+ I A++LD GI A +F++ Sbjct: 111 RKSLAGFARSIKIGDHLILGESADHAKIRVSESTLADALEAFIGAIWLDRGISAATSFIN 170 Query: 141 KYWKQRALKSGKFR------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 ++ ++ +F + K+ L E A P Y V G +H+ RFTV V Sbjct: 171 EH----VIEHRRFNTLITAENNHKSRLIEHTQALHLPPPRYSVISEEGAEHEKRFTVEVS 226 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVL 220 +G +G+ K+ AEQ AAAE + Sbjct: 227 CNGKVLGRGIAARKKDAEQHAAAEAM 252 >gi|291320365|ref|YP_003515628.1| ribonuclease III [Mycoplasma agalactiae] gi|290752699|emb|CBH40673.1| Ribonuclease III (RNase III) [Mycoplasma agalactiae] Length = 226 Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 108/202 (53%), Gaps = 8/202 (3%) Query: 25 KALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +A TH SS+++S ++Y+ LEFLGD IL +S +LFN F +G+L++ + LV ++ Sbjct: 23 QAFTHGSSVANSKGKNYQTLEFLGDAILQFYVSAILFNSFKDKNQGQLTLIRSKLVCTDS 82 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 +Q+A L L F+ +SS++ + AD+ ESL+AA++LD G+ F+DK Sbjct: 83 LNQIADLLKLKDFLVLSSNVVATEVLSSKKVGADIFESLVAAIFLDQGLPKVKEFLDKTL 142 Query: 144 KQ--RALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + K GK +D+KT LQE+ + F + T++S + F G Sbjct: 143 LPLVKQYKEGKIELKDSKTRLQEYMQS-FSKKTVFYQTYQS---ENNLFKAEAIYEGNVY 198 Query: 201 AQGMDCSKRAAEQVAAAEVLKR 222 G+ SK AE+ AA + L + Sbjct: 199 GSGVGKSKHEAEENAANDALNK 220 >gi|227890258|ref|ZP_04008063.1| ribonuclease III [Lactobacillus johnsonii ATCC 33200] gi|227849072|gb|EEJ59158.1| ribonuclease III [Lactobacillus johnsonii ATCC 33200] Length = 226 Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 101/206 (49%), Gaps = 7/206 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L+K+ G F N LLE A THSS + HS ++ YE+LEFLGD +L L +S L+ HF Sbjct: 9 NLKKKYGIKFNNEKLLEDAFTHSSYANEHSGRKDYEKLEFLGDAVLELAVSDYLYRHFPR 68 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL+ +++V E S+ A E I + K ++ DV E+ A Sbjct: 69 LNEGELTRMRSNIVRTEGFSEFAIECGFPEEIDLGKGEEKAGARKRKTLLEDVFEAFNGA 128 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 L+LD G+ F+ + G F RD KTELQE V EY+V S Sbjct: 129 LFLDQGMPAVQHFL-HLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQVI--SED 185 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 + P F V + ++G ++G +K+ Sbjct: 186 ESKPSFKVQLLVNGEKVSEGQGRNKK 211 >gi|29123082|gb|AAO65849.1| ribonuclease III [Mus musculus] Length = 1021 Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 753 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 812 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + V++D K + T AD++ES Sbjct: 813 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-VTNDKTKRPVALRTKTLADLLESF 871 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 872 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 930 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 931 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 978 Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 605 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 659 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 660 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 707 >gi|119713601|gb|ABL97652.1| ribonuclease III [uncultured marine bacterium EB0_39H12] Length = 218 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 114/220 (51%), Gaps = 16/220 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+ LE Y+F + L + ALTH S+S + ERLEFLGD IL L +S LFN + + Sbjct: 6 YTNLE----YSFQDEELFQLALTHKSLS---SHNNERLEFLGDAILNLYVSERLFNTYGN 58 Query: 66 AKEGELSVRFN-SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 KEG+L+ RF S+VS E +VA L+L++ I+ L K SI +V+E+LI Sbjct: 59 LKEGKLT-RFKASIVSRENLHRVAINLELSNHIK----LGKGESLQGNSILGNVLEALIG 113 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++LD +D +K LK + +D K+ LQE ++ P Y + + Sbjct: 114 AIFLDSDYSETKNVLDNIFKDDFLKLVEEEELKDPKSTLQELIQKQYQSLPIYSLNEQIS 173 Query: 183 PDHDPRFTVVVE-ISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + +F V + G QG +++ AE AA+ +L+ Sbjct: 174 DKKENQFEVTCSVVEGNLVTQGKGNTRKGAELNAASNMLE 213 >gi|299144133|ref|ZP_07037213.1| ribonuclease III [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518618|gb|EFI42357.1| ribonuclease III [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 233 Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 6/216 (2%) Query: 15 YAFANRSLLEKALTHSSI--SHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 Y F N + ALTHSS H+ ++ S ERLEFLGD +L L+I + + KEG Sbjct: 14 YEFKNDKYINIALTHSSYINEHNLKDTVSNERLEFLGDAVLDLIIGEYFYYSHKNLKEGS 73 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 LS + +V+ + ++A + + F+ K+ + S +D +E+LI A+Y+DG Sbjct: 74 LSKLRSKVVNENSLYKIATNISIGDFMYFGKGEIKNKGNLRESTLSDCLEALIGAIYIDG 133 Query: 131 GIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G++ + + + R ++ + D KT LQE +Y + GP +D Sbjct: 134 GLDAVRKVILRLFHDRIMEVENLKSLEDYKTMLQECIQRNKMGNIKYVIYDEKGPSNDKV 193 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F V I+ + G +K+++EQ+AA L R G Sbjct: 194 FYSNVLINDIIIGNGYGKTKKSSEQLAAKNALIRIG 229 >gi|58040241|ref|YP_192205.1| ribonuclease III [Gluconobacter oxydans 621H] gi|58002655|gb|AAW61549.1| Ribonuclease III [Gluconobacter oxydans 621H] Length = 174 Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 1/166 (0%) Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L + +EG L R LVS +++A ++ L++ +++S ++SI+AD Sbjct: 5 LLERYPDEQEGALGPRHAHLVSRTVLAEIADQVGLSASLQISPHEEDAGIRRLSSIRADA 64 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +E+L+ ALYLDGG+E A V +YW+ R + + ++ KT LQE+ ++ P Y++ Sbjct: 65 MEALLGALYLDGGLEPARRVVHQYWQSRIESADRPHKEPKTLLQEYMLSQGLPLPHYELL 124 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H P F V V G G SKR AE AA +LK G Sbjct: 125 SSDGPSHAPVFRVSVTTMGHT-GTGEAGSKRLAESAAATALLKHLG 169 >gi|149183216|ref|ZP_01861662.1| ribonuclease III [Bacillus sp. SG-1] gi|148849081|gb|EDL63285.1| ribonuclease III [Bacillus sp. SG-1] Length = 249 Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 11/226 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ +++ F N LL +A THSS + ++ E ERLEFLGD +L L +S L+ Sbjct: 19 KFKEFQRKHNIKFNNEKLLRQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTVSQFLY 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EGEL+ ++V + A EL + + ++ ADV E Sbjct: 79 KKYPTMSEGELTKLRAAIVCEPSLVTFANELKFGELVLLGKGEELTGGRERPALLADVFE 138 Query: 121 SLIAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYK 176 + I ALYLD G+E + +++ Y K + SG F D K++LQE T EY Sbjct: 139 AFIGALYLDQGLEPVLSILEENVYPK---INSGAFSHVMDFKSQLQELVQRDSAGTIEYG 195 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + GP H+ F V ++G G SK+ AEQ AA L++ Sbjct: 196 ILQEKGPAHNREFVSRVCLNGEELGIGTGRSKKEAEQHAAQMALEK 241 >gi|227878860|ref|ZP_03996766.1| ribonuclease III [Lactobacillus crispatus JV-V01] gi|256843377|ref|ZP_05548865.1| ribonuclease III [Lactobacillus crispatus 125-2-CHN] gi|256849801|ref|ZP_05555232.1| double stranded RNA-specific ribonuclease RNase [Lactobacillus crispatus MV-1A-US] gi|262046954|ref|ZP_06019914.1| ribonuclease III [Lactobacillus crispatus MV-3A-US] gi|293381175|ref|ZP_06627183.1| ribonuclease III [Lactobacillus crispatus 214-1] gi|227861551|gb|EEJ69164.1| ribonuclease III [Lactobacillus crispatus JV-V01] gi|256614797|gb|EEU19998.1| ribonuclease III [Lactobacillus crispatus 125-2-CHN] gi|256713290|gb|EEU28280.1| double stranded RNA-specific ribonuclease RNase [Lactobacillus crispatus MV-1A-US] gi|260572936|gb|EEX29496.1| ribonuclease III [Lactobacillus crispatus MV-3A-US] gi|290922215|gb|EFD99209.1| ribonuclease III [Lactobacillus crispatus 214-1] Length = 229 Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 11/213 (5%) Query: 17 FANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N LLE+A THSS S+ + YE+LEFLGD +L L +S ++ H+ EGEL+ Sbjct: 18 FNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAVSNYVYLHYPKLNEGELT 77 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +++V E S+ A E I + + K ++ DV E+ AL+LD G+ Sbjct: 78 RLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLLEDVFEAFNGALFLDQGM 137 Query: 133 EVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRF 189 F+ + G+F RD KT+LQE V EY V S P H F Sbjct: 138 PAVEHFL-HLTVYPLIDKGEFDDSRDYKTDLQEVLQQDGPVNIEYTVISESQLPSH---F 193 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V ++I+G ++G +K+AAEQ AA L++ Sbjct: 194 VVELKINGKVESKGEGHNKKAAEQQAAKFALQK 226 >gi|221633356|ref|YP_002522581.1| ribonuclease III [Thermomicrobium roseum DSM 5159] gi|221156675|gb|ACM05802.1| ribonuclease III [Thermomicrobium roseum DSM 5159] Length = 252 Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 112/227 (49%), Gaps = 14/227 (6%) Query: 13 IGYAFANRSLLEKALTH--------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +G AF LL +ALTH S + +E+ ERLEFLGD +L LL+S L+ F Sbjct: 25 LGIAFRRPDLLRQALTHLSYVYERSRSTQAAVEEANERLEFLGDAVLELLVSEFLYRRFP 84 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTSIQADVVESLI 123 +A EGEL+ +LV T ++ AR L F+ + S++ + I A E+++ Sbjct: 85 TASEGELTAYRAALVRTPTLARWARRFRLDEFLYLGRSEVPRPGRPVRERILAGAFEAVL 144 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 ALYLD GI V F+ + + A L + + K LQE + +TP Y+ + Sbjct: 145 GALYLDRGIRVVRRFLHRLLLEEAEGLIAIGQNENYKGRLQELIQDRLRITPVYRTIAVT 204 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR---EGI 225 GP H FT V I G SKRAAEQ AA L+R EGI Sbjct: 205 GPAHQRTFTAEVLIGERPYGVGHGPSKRAAEQEAARRALERLRAEGI 251 >gi|57530438|ref|NP_001006379.1| ribonuclease 3 [Gallus gallus] gi|53134951|emb|CAG32380.1| hypothetical protein RCJMB04_24a21 [Gallus gallus] Length = 1336 Score = 94.7 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1068 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1127 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + F +++D K + T AD++ES Sbjct: 1128 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVALRTKTLADLLESF 1186 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1187 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1245 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1246 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1293 Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 9/108 (8%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 S I+H+ ERLEFLGD ++ L S L+ F + +EG L+ ++V + + +A+ Sbjct: 922 SRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAK 976 Query: 90 ELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 +L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 977 KLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1022 >gi|169350084|ref|ZP_02867022.1| hypothetical protein CLOSPI_00826 [Clostridium spiroforme DSM 1552] gi|169293297|gb|EDS75430.1| hypothetical protein CLOSPI_00826 [Clostridium spiroforme DSM 1552] Length = 226 Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 110/209 (52%), Gaps = 12/209 (5%) Query: 22 LLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + ++A TH+S ++ + YERLEFLGD +L +S LF+ + + EG L+ + L Sbjct: 19 IFKQAFTHTSYANENKLKNHDYERLEFLGDAVLQYHVSRYLFDLYPTMPEGRLTKLRSKL 78 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 V E+ ++ ARELDL ++I + + + S+ AD+ E+ + A+ D G+E + Sbjct: 79 VREESLARFARELDLGTYIYLGAGEINNGGRDRDSVLADIFEAFMGAICHDCGME----Y 134 Query: 139 VDKYWKQ---RALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 VD K+ R + + D KT+LQE A T Y++ +GP ++P F + V Sbjct: 135 VDMMLKKTIYRHVNDVNYDDITDFKTKLQELIQADQRKTVTYELLSATGPSNNPVFEMAV 194 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + G+ SK+ AEQ AA + L + Sbjct: 195 RMDDMILGTGIGSSKKRAEQQAAKDALNK 223 >gi|30021937|ref|NP_833568.1| ribonuclease III [Bacillus cereus ATCC 14579] gi|206971258|ref|ZP_03232209.1| ribonuclease III [Bacillus cereus AH1134] gi|218232410|ref|YP_002368650.1| ribonuclease III [Bacillus cereus B4264] gi|218899002|ref|YP_002447413.1| ribonuclease III [Bacillus cereus G9842] gi|228902352|ref|ZP_04066509.1| Ribonuclease 3 [Bacillus thuringiensis IBL 4222] gi|228909674|ref|ZP_04073497.1| Ribonuclease 3 [Bacillus thuringiensis IBL 200] gi|228922603|ref|ZP_04085903.1| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954126|ref|ZP_04116154.1| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960065|ref|ZP_04121729.1| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228973866|ref|ZP_04134442.1| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980456|ref|ZP_04140766.1| Ribonuclease 3 [Bacillus thuringiensis Bt407] gi|229047536|ref|ZP_04193126.1| Ribonuclease 3 [Bacillus cereus AH676] gi|229071347|ref|ZP_04204570.1| Ribonuclease 3 [Bacillus cereus F65185] gi|229081104|ref|ZP_04213614.1| Ribonuclease 3 [Bacillus cereus Rock4-2] gi|229111320|ref|ZP_04240873.1| Ribonuclease 3 [Bacillus cereus Rock1-15] gi|229129125|ref|ZP_04258098.1| Ribonuclease 3 [Bacillus cereus BDRD-Cer4] gi|229146420|ref|ZP_04274791.1| Ribonuclease 3 [Bacillus cereus BDRD-ST24] gi|229152048|ref|ZP_04280243.1| Ribonuclease 3 [Bacillus cereus m1550] gi|229180125|ref|ZP_04307469.1| Ribonuclease 3 [Bacillus cereus 172560W] gi|229192018|ref|ZP_04318988.1| Ribonuclease 3 [Bacillus cereus ATCC 10876] gi|296504344|ref|YP_003666044.1| ribonuclease III [Bacillus thuringiensis BMB171] gi|38372411|sp|Q819V8|RNC_BACCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735367|sp|B7IUK8|RNC_BACC2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735368|sp|B7HDX2|RNC_BACC4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|29897493|gb|AAP10769.1| Ribonuclease III [Bacillus cereus ATCC 14579] gi|206734030|gb|EDZ51201.1| ribonuclease III [Bacillus cereus AH1134] gi|218160367|gb|ACK60359.1| ribonuclease III [Bacillus cereus B4264] gi|218544165|gb|ACK96559.1| ribonuclease III [Bacillus cereus G9842] gi|228591569|gb|EEK49418.1| Ribonuclease 3 [Bacillus cereus ATCC 10876] gi|228603334|gb|EEK60811.1| Ribonuclease 3 [Bacillus cereus 172560W] gi|228631397|gb|EEK88031.1| Ribonuclease 3 [Bacillus cereus m1550] gi|228637053|gb|EEK93512.1| Ribonuclease 3 [Bacillus cereus BDRD-ST24] gi|228654362|gb|EEL10227.1| Ribonuclease 3 [Bacillus cereus BDRD-Cer4] gi|228672096|gb|EEL27387.1| Ribonuclease 3 [Bacillus cereus Rock1-15] gi|228702148|gb|EEL54624.1| Ribonuclease 3 [Bacillus cereus Rock4-2] gi|228711801|gb|EEL63753.1| Ribonuclease 3 [Bacillus cereus F65185] gi|228723783|gb|EEL75138.1| Ribonuclease 3 [Bacillus cereus AH676] gi|228779276|gb|EEM27533.1| Ribonuclease 3 [Bacillus thuringiensis Bt407] gi|228785891|gb|EEM33894.1| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799581|gb|EEM46534.1| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805446|gb|EEM52037.1| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228837032|gb|EEM82373.1| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228849963|gb|EEM94794.1| Ribonuclease 3 [Bacillus thuringiensis IBL 200] gi|228857321|gb|EEN01824.1| Ribonuclease 3 [Bacillus thuringiensis IBL 4222] gi|296325396|gb|ADH08324.1| ribonuclease III [Bacillus thuringiensis BMB171] gi|326941618|gb|AEA17514.1| ribonuclease III [Bacillus thuringiensis serovar chinensis CT-43] Length = 245 Score = 94.7 bits (234), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G+E F+ + + + G F D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWEFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQ 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++ +A G SK+ AEQ AAAE LK+ Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240 >gi|160333099|ref|NP_001103942.1| ribonuclease 3 [Danio rerio] gi|124481653|gb|AAI33135.1| Zgc:158612 [Danio rerio] Length = 1289 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 113/228 (49%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1026 KLTNFEDAIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1085 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + F +++D K + T AD++ES Sbjct: 1086 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVALRTKTLADLLESF 1144 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1145 IAALYIDKDLEFVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1203 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1204 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1251 Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 77/184 (41%), Gaps = 59/184 (32%) Query: 9 LEKRIGYAFANRSLLEKALTHSS------------------------------ISHSYQE 38 L+K IGY F R LL+ A+TH S + H Y Sbjct: 799 LDKLIGYMFKERCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMYMR 858 Query: 39 SY-------------------------ERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 ERLEFLGD ++ L S L++ F S +EG L+ Sbjct: 859 KKGINTLINIMSRLGQDDPSPSRINHNERLEFLGDAVVEFLTSVHLYHLFPSLEEGGLAT 918 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGG 131 ++V + + +A++L+L F+ + D+C S + A+ E+LI A+YL+GG Sbjct: 919 YRTAIVQNQHLAMLAKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGG 976 Query: 132 IEVA 135 +E A Sbjct: 977 LEEA 980 >gi|73953918|ref|XP_868248.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 7 [Canis familiaris] Length = 1016 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 748 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 807 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 808 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 866 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 867 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 925 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 926 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 973 Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 600 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 654 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 655 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 702 >gi|82750837|ref|YP_416578.1| ribonuclease III [Staphylococcus aureus RF122] gi|90101646|sp|Q2YXI3|RNC_STAAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|82656368|emb|CAI80786.1| Ribonuclease III [Staphylococcus aureus RF122] Length = 243 Score = 94.7 bits (234), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 108/226 (47%), Gaps = 11/226 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 R+ T +G+ + N L ++A +HSS + + + ERLEFLGD +L L +S LF Sbjct: 16 RFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG L+ ++V + A ++ L I + K S+ +DV E Sbjct: 76 DKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDVFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + I ALYLD G+++ F +K + +Q L D KT+ QE+ H + Y Sbjct: 136 AFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLG---VVDFKTQFQEYVHQQNKGDVTYN 192 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + GP H FT V + G A A+G +K+ +EQ AA K+ Sbjct: 193 LIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQ 238 >gi|75762036|ref|ZP_00741948.1| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490482|gb|EAO53786.1| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 262 Score = 94.7 bits (234), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 36 FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 95 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 96 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 155 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G+E F+ + + + G F D K++LQE EY++ Sbjct: 156 FIGALYLDQGLETVWEFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQ 214 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++ +A G SK+ AEQ AAAE LK+ Sbjct: 215 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 257 >gi|224045068|ref|XP_002199233.1| PREDICTED: ribonuclease III, nuclear [Taeniopygia guttata] Length = 1338 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1070 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1129 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + F +++D K + T AD++ES Sbjct: 1130 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVTLRTKTLADLLESF 1188 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1189 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1247 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1248 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1295 Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 9/108 (8%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 S I+H+ ERLEFLGD ++ L S L+ F + +EG L+ ++V + + +A+ Sbjct: 924 SRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAK 978 Query: 90 ELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 +L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 979 KLELERFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1024 >gi|325265700|ref|ZP_08132389.1| ribonuclease III [Kingella denitrificans ATCC 33394] gi|324982831|gb|EGC18454.1| ribonuclease III [Kingella denitrificans ATCC 33394] Length = 242 Score = 94.7 bits (234), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 108/215 (50%), Gaps = 6/215 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++R+GY F LL++ALTH S + + ERLEF+GD I+ +++ +L++ F E Sbjct: 13 LQQRLGYTFRQPELLQQALTHRSAG---KNNNERLEFVGDGIVNFVVAQMLYHAFPDLPE 69 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LSV LV +++AREL + + + + K SI AD +E+L AA+ L Sbjct: 70 GRLSVLRTHLVKEAALAEMARELGVGAALTLGVGELKSGGHDRPSILADALEALFAAIRL 129 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D + + + + QR + + +D KT LQE A P+Y++ ++G Sbjct: 130 DADLPTVERIIQQLFSQRIAHIDQHQPAKDNKTRLQEALQACRLPLPKYRIEKQTGEGEH 189 Query: 187 PRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220 +F V ++ L S+R AEQ A + L Sbjct: 190 AQFDVSCDLGELGKITYAHAHSRREAEQECARQAL 224 >gi|42782941|ref|NP_980188.1| ribonuclease III [Bacillus cereus ATCC 10987] gi|47570283|ref|ZP_00240932.1| ribonuclease III [Bacillus cereus G9241] gi|206978506|ref|ZP_03239364.1| ribonuclease III [Bacillus cereus H3081.97] gi|217961269|ref|YP_002339837.1| ribonuclease III [Bacillus cereus AH187] gi|222097294|ref|YP_002531351.1| ribonuclease iii [Bacillus cereus Q1] gi|228986992|ref|ZP_04147118.1| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157425|ref|ZP_04285503.1| Ribonuclease 3 [Bacillus cereus ATCC 4342] gi|229197960|ref|ZP_04324674.1| Ribonuclease 3 [Bacillus cereus m1293] gi|81409451|sp|Q732M1|RNC_BACC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735369|sp|B7HLI2|RNC_BACC7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807238|sp|B9IVD8|RNC_BACCQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|42738868|gb|AAS42796.1| ribonuclease III [Bacillus cereus ATCC 10987] gi|47553047|gb|EAL11449.1| ribonuclease III [Bacillus cereus G9241] gi|206743285|gb|EDZ54734.1| ribonuclease III [Bacillus cereus H3081.97] gi|217063842|gb|ACJ78092.1| ribonuclease III [Bacillus cereus AH187] gi|221241352|gb|ACM14062.1| ribonuclease III [Bacillus cereus Q1] gi|228585439|gb|EEK43543.1| Ribonuclease 3 [Bacillus cereus m1293] gi|228626152|gb|EEK82901.1| Ribonuclease 3 [Bacillus cereus ATCC 4342] gi|228772770|gb|EEM21210.1| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|324327746|gb|ADY23006.1| ribonuclease III [Bacillus thuringiensis serovar finitimus YBT-020] Length = 245 Score = 94.7 bits (234), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G+E F+ + + + G F D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++ +A G SK+ AEQ AAAE LK+ Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240 >gi|73953908|ref|XP_854135.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 2 [Canis familiaris] Length = 1365 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1097 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1156 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1157 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1215 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1216 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1274 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1275 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1322 Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 949 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1003 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 1004 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1051 >gi|7022183|dbj|BAA91511.1| unnamed protein product [Homo sapiens] Length = 769 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 501 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 560 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 561 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 619 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 620 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 678 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 679 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 726 Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 353 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 407 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 408 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 455 >gi|212702556|ref|ZP_03310684.1| hypothetical protein DESPIG_00579 [Desulfovibrio piger ATCC 29098] gi|212673997|gb|EEB34480.1| hypothetical protein DESPIG_00579 [Desulfovibrio piger ATCC 29098] Length = 243 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 116/230 (50%), Gaps = 22/230 (9%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIST 57 +SA +E+ + Y F+ + ALTHSS ++ + Q ERLEFLGD +L L IS Sbjct: 11 ISAADLERIERILDYHFSRPERVALALTHSSWANEHGLGQAHNERLEFLGDAVLELCISW 70 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF F A+EG+++ + LV + +Q ARE + +R+ + ++ +D Sbjct: 71 ELFTRFPQAREGDMTRVRSQLVGTTSLAQRARETGIDQLLRLGRGEEQQGGRSRDAVLSD 130 Query: 118 VVESLIAALYLDGGIEVA--------GTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAK 168 V E+++A++Y DGG A GT +D+ + GK + +D KT LQE + A Sbjct: 131 VFEAVLASVYEDGGYAAAQKVVARIFGTLLDE------VSVGKPKTKDFKTSLQERSVAL 184 Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEI-SGLA-PAQGMDCSKRAAEQVAA 216 F P Y GP+H FTV V + SG A G C K AEQ AA Sbjct: 185 FHDRPVYTTLACEGPEHARHFTVQVSLPSGQQFTASGSSCKK--AEQEAA 232 >gi|296117605|ref|ZP_06836189.1| ribonuclease III [Corynebacterium ammoniagenes DSM 20306] gi|295969336|gb|EFG82577.1| ribonuclease III [Corynebacterium ammoniagenes DSM 20306] Length = 244 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 5/186 (2%) Query: 23 LEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 L ALTH S + H + + ERLEFLGD +LGL I+ L+ + + E ++S S+VS Sbjct: 38 LRLALTHRSFANEHGHLPNNERLEFLGDAVLGLSIAARLYEKYPTRPESDISKMRASIVS 97 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + VARE+ L +FI + SI AD E+L A+YL G E A + Sbjct: 98 RFGLADVAREIGLGAFILLGKGEANSNGRDKDSILADTTEALFGAIYLQHGFETARRVIL 157 Query: 141 KYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + + Q+ A S + D KT LQE + TP+Y T +GP+HD FT V + G Sbjct: 158 ELFAQKVDAAVSTRNHMDWKTTLQELCAERKLPTPDYSAT-STGPEHDQLFTAQVHVDGQ 216 Query: 199 APAQGM 204 +G+ Sbjct: 217 LLGEGV 222 >gi|169261416|gb|ACA52288.1| nuclear ribonuclease III protein [Xenopus tropicalis] Length = 1325 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 113/228 (49%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1061 KLTKFEEAIGVEFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1120 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + F +++D K T AD++ES Sbjct: 1121 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVVLRTKTLADLLESF 1179 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1180 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1238 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1239 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1286 Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F +EG L+ ++V + + + Sbjct: 913 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPLLEEGGLATYRTAIVQNQHLAML 967 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+L+ A+YL+GG+E A Sbjct: 968 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALMGAVYLEGGLEEA 1015 >gi|229086402|ref|ZP_04218578.1| Ribonuclease 3 [Bacillus cereus Rock3-44] gi|228696918|gb|EEL49727.1| Ribonuclease 3 [Bacillus cereus Rock3-44] Length = 245 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 112/223 (50%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + T +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKTFQQKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL + + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGNLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G++ F+ + + + G F D K++LQE EY++ Sbjct: 139 FIGALYLDQGLDTVWGFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++ +A G SK+ AEQ AAAE LK+ Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240 >gi|34784428|gb|AAH57687.1| Rnasen protein [Mus musculus] Length = 942 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 674 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 733 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 734 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 792 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 793 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 851 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 852 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 899 Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 526 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 580 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 581 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 628 >gi|42519393|ref|NP_965323.1| ribonuclease III [Lactobacillus johnsonii NCC 533] gi|81667674|sp|Q74IP8|RNC_LACJO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|41583681|gb|AAS09289.1| ribonuclease III [Lactobacillus johnsonii NCC 533] gi|329667082|gb|AEB93030.1| ribonuclease III [Lactobacillus johnsonii DPC 6026] Length = 226 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 100/207 (48%), Gaps = 7/207 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L+K+ G F N LLE A THSS + H ++ YE+LEFLGD +L L +S L+ HF Sbjct: 8 QNLKKKYGIKFNNEKLLEDAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSDYLYRHFP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ +++V E S+ A E I + K ++ DV E+ Sbjct: 68 RLNEGELTRMRSNIVRTEGFSEFAIECGFPEEINLGKGEEKAGARKRKTLLEDVFEAFNG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL+LD G+ F+ + G F RD KTELQE V EY+V S Sbjct: 128 ALFLDQGMPAVQHFL-HLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQVI--SE 184 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 + P F V + ++G ++G +K+ Sbjct: 185 DESKPSFKVQLLVNGEKVSEGQGRNKK 211 >gi|317121789|ref|YP_004101792.1| ribonuclease III [Thermaerobacter marianensis DSM 12885] gi|315591769|gb|ADU51065.1| ribonuclease III [Thermaerobacter marianensis DSM 12885] Length = 329 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/203 (35%), Positives = 107/203 (52%), Gaps = 9/203 (4%) Query: 22 LLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 L +ALTH+S + ++ ERLEFLGD +L L ++ +F + EGELS + Sbjct: 90 LFLEALTHASYRAEHPDTAGADNERLEFLGDAVLNLCVTDHIFRTYPQRPEGELSKLRAA 149 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 V AET + A+ L L +R+ S+ AD E+++AA+YL G+E A Sbjct: 150 TVRAETLAVTAQRLGLGELLRLGRGEEATGGRQRPSVLADAFEAVVAAVYLQEGLEGARA 209 Query: 138 FVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDPRFTVVV 193 F+ + +R +S D KT LQE + + G+ P Y+V SGP+HDPR+TV V Sbjct: 210 FILRTLGDEIRRLAESSGACDDPKTALQELSR-RLGLGEPSYRVIDASGPEHDPRYTVEV 268 Query: 194 EISGLAPAQGMDCSKRAAEQVAA 216 + G Q + SK+ AE+ AA Sbjct: 269 RVGGRPLGQAVGRSKKVAEREAA 291 >gi|114600835|ref|XP_001157306.1| PREDICTED: ribonuclease III, nuclear isoform 3 [Pan troglodytes] Length = 762 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 494 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 553 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 554 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 612 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 613 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 671 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 672 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 719 Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 346 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 400 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 401 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 448 >gi|309263205|ref|XP_001473806.2| PREDICTED: ribonuclease 3-like [Mus musculus] Length = 1343 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1075 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1134 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1135 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1193 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1194 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1252 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1253 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1300 Score = 40.0 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 24/122 (19%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS------- 80 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V Sbjct: 918 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 972 Query: 81 ---AETCSQVARELDLASFIRVSSDLRKDVCSFM----TSIQADVVESLIAALYLDGGIE 133 E+C+ + +D S D R VC F+ S+ + A+YL+G +E Sbjct: 973 AKLGESCAGESGVMD-----HDSPDHRGVVCFFVLVCYLSLLLTPASFHLGAVYLEGSLE 1027 Query: 134 VA 135 A Sbjct: 1028 EA 1029 >gi|301769069|ref|XP_002919953.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3-like [Ailuropoda melanoleuca] Length = 1369 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1101 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1160 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1161 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1219 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1220 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1278 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1279 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1326 Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 953 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1007 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 1008 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1055 >gi|297294054|ref|XP_002804372.1| PREDICTED: ribonuclease 3 isoform 2 [Macaca mulatta] gi|297294056|ref|XP_002804373.1| PREDICTED: ribonuclease 3 isoform 3 [Macaca mulatta] Length = 1374 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1283 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1284 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331 Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 958 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1012 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 1013 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1060 >gi|114600825|ref|XP_001157646.1| PREDICTED: ribonuclease III, nuclear isoform 8 [Pan troglodytes] Length = 1343 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1075 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1134 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1135 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1193 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1194 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1252 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1253 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1300 Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 927 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 981 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 982 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1029 >gi|114600823|ref|XP_001157589.1| PREDICTED: ribonuclease III, nuclear isoform 7 [Pan troglodytes] Length = 1382 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1114 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1173 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1174 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1232 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1233 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1291 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1292 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1339 Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 4/97 (4%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ + Sbjct: 974 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYA 1033 Query: 101 SDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 D+C S + A+ E+LI A+YL+G +E A Sbjct: 1034 HG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1068 >gi|4768838|gb|AAD29637.1|AF116910_1 putative ribonuclease III [Homo sapiens] Length = 541 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 115/233 (49%), Gaps = 22/233 (9%) Query: 5 RYSTLEKRIGYAFANRSLLEKALT-------HSSISHSYQESYERLEFLGDRILGLLIST 57 + + E+ IG F + LL +A T H ++ H+ +R+EFLGD I+ L+ + Sbjct: 273 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHN-----QRMEFLGDSIMQLVATE 327 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF HF EG L++ +SLV+ T ++VA EL + + +++D K + T AD Sbjct: 328 YLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLAD 386 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWA-----HAKF 169 ++ES IAALY+D +E TF++ + R LK + D K++LQ+ K Sbjct: 387 LLESFIAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKE 445 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P YK GP H +TV V G G S + AE AA + L++ Sbjct: 446 PDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 498 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 125 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 179 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 180 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 227 >gi|313897603|ref|ZP_07831145.1| ribonuclease III [Clostridium sp. HGF2] gi|312957555|gb|EFR39181.1| ribonuclease III [Clostridium sp. HGF2] Length = 227 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 6/217 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 K A++++ L+ +AL HSS + SY ERLEF+GD +L L + LF Sbjct: 9 KNQNIAYSDKKLITQALVHSSYVNEHKSYAHDNERLEFMGDAVLQLWTTKKLFLLEPELS 68 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+++ LV E ++ R+L L ++ + K SI AD+ E+L+ A++ Sbjct: 69 EGQMTTLRAQLVCEEALAEYNRQLGLGKYLMLGVGEEKTGGRQRDSILADMFEALLGAVF 128 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD G+E + + A+ K + D KT+LQE+ + T Y+ SGP + Sbjct: 129 LDQGMEAIDSILSAVVTP-AISRPKSEKVIDYKTKLQEYIQSDSRKTVHYETVNVSGPSN 187 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F V+V + + +G SK+ AEQ+AA + ++ Sbjct: 188 KPEFEVIVMLDDINLGRGKGFSKKRAEQMAAKDAFEK 224 >gi|73953916|ref|XP_868245.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 6 [Canis familiaris] Length = 635 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 115/233 (49%), Gaps = 22/233 (9%) Query: 5 RYSTLEKRIGYAFANRSLLEKALT-------HSSISHSYQESYERLEFLGDRILGLLIST 57 + + E+ IG F + LL +A T H ++ H+ +R+EFLGD I+ L+ + Sbjct: 367 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHN-----QRMEFLGDSIMQLVATE 421 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF HF EG L++ +SLV+ T ++VA EL + + +++D K + T AD Sbjct: 422 YLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLAD 480 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWA-----HAKF 169 ++ES IAALY+D +E TF++ + R LK + D K++LQ+ K Sbjct: 481 LLESFIAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKE 539 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P YK GP H +TV V G G S + AE AA + L++ Sbjct: 540 PDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 592 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 219 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 273 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 274 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 321 >gi|25028532|ref|NP_738586.1| ribonuclease III [Corynebacterium efficiens YS-314] gi|23493817|dbj|BAC18786.1| putative ribonuclease III [Corynebacterium efficiens YS-314] Length = 255 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 111/218 (50%), Gaps = 6/218 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLF 60 A+ ++ L +R+G +R LL ALTH S ++ + ERLEFLGD +LGL ++ L+ Sbjct: 28 AVNHADLLERLGVDI-DRDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLAVANRLY 86 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + S+ E ++S S+VS + +ARE++L FI + SI AD E Sbjct: 87 ELYPSSPESDISKMRASIVSRYGLADIAREINLGEFILLGKGELLTEGRSKDSILADTTE 146 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +L+ A++ G EVA V + + + +D KT LQE + EY+ T Sbjct: 147 ALLGAIFRQHGYEVARDVVLTLFHHKINHASAKGIHQDWKTTLQEELAQRKKPMVEYQTT 206 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDHD FT VV + + +G +K+ AEQ AA Sbjct: 207 -SVGPDHDLLFTAVVYLGDVEMGRGEGPNKKLAEQEAA 243 >gi|259507587|ref|ZP_05750487.1| ribonuclease III [Corynebacterium efficiens YS-314] gi|90101620|sp|Q8FP16|RNC_COREF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|259164766|gb|EEW49320.1| ribonuclease III [Corynebacterium efficiens YS-314] Length = 247 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 111/218 (50%), Gaps = 6/218 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLF 60 A+ ++ L +R+G +R LL ALTH S ++ + ERLEFLGD +LGL ++ L+ Sbjct: 20 AVNHADLLERLGVDI-DRDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLAVANRLY 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + S+ E ++S S+VS + +ARE++L FI + SI AD E Sbjct: 79 ELYPSSPESDISKMRASIVSRYGLADIAREINLGEFILLGKGELLTEGRSKDSILADTTE 138 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 +L+ A++ G EVA V + + + +D KT LQE + EY+ T Sbjct: 139 ALLGAIFRQHGYEVARDVVLTLFHHKINHASAKGIHQDWKTTLQEELAQRKKPMVEYQTT 198 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDHD FT VV + + +G +K+ AEQ AA Sbjct: 199 -SVGPDHDLLFTAVVYLGDVEMGRGEGPNKKLAEQEAA 235 >gi|15827877|ref|NP_302140.1| ribonuclease III [Mycobacterium leprae TN] gi|221230354|ref|YP_002503770.1| ribonuclease III [Mycobacterium leprae Br4923] gi|7531192|sp|O69469|RNC_MYCLE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|3150224|emb|CAA19196.1| ribonuclease III [Mycobacterium leprae] gi|13093430|emb|CAC30612.1| RNAse III [Mycobacterium leprae] gi|219933461|emb|CAR71754.1| RNAse III [Mycobacterium leprae Br4923] Length = 238 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 80/213 (37%), Positives = 105/213 (49%), Gaps = 20/213 (9%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S + H + ERLEFLGD +L L I+ LF+ EG+L+ S+V Sbjct: 20 LLSLALTHRSYAYEHGGLPTNERLEFLGDAVLSLTITDELFHRHPDRSEGDLAKLRASVV 79 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVA- 135 + + + VAR L R + + +SI AD +ESL+ A+YL GIEVA Sbjct: 80 NTQALAYVARNLSDGGLGVYLLLGRGETNTGGADKSSILADGMESLLGAIYLHHGIEVAR 139 Query: 136 -------GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 GT +D L +G D KT LQE A+ P Y VT +GPDHD Sbjct: 140 QVILRLFGTLLD---AAPTLGAG---LDWKTSLQELTAARGMGVPSYVVT-STGPDHDKE 192 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 FT VV + G+ SK+ AEQ AA+ K Sbjct: 193 FTAVVVVMDTEYGSGIGHSKKEAEQKAASAAWK 225 >gi|293376124|ref|ZP_06622372.1| ribonuclease III [Turicibacter sanguinis PC909] gi|325841637|ref|ZP_08167414.1| ribonuclease III [Turicibacter sp. HGF1] gi|292645251|gb|EFF63313.1| ribonuclease III [Turicibacter sanguinis PC909] gi|325489915|gb|EGC92263.1| ribonuclease III [Turicibacter sp. HGF1] Length = 236 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 100/198 (50%), Gaps = 7/198 (3%) Query: 25 KALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +A THSS + ++ E ERLE+LGD +L L +S LFN S EGE++ LV Sbjct: 26 QAFTHSSYVNEHRHLKIEDNERLEYLGDAVLELTVSNYLFNLKPSLSEGEMTKIRAQLVC 85 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + AR L+L + + ++ AD E+ + A+YLD G++ +FV Sbjct: 86 EPSLESYARNLNLGKLMLLGRGEENSGGRERPTVLADAFEAFVGAMYLDLGMDTVYSFVH 145 Query: 141 KYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + +A + G+ + D K+ LQE A EY++ +GP H+ F +V + G+ Sbjct: 146 EII-HKAYQQGEVTQVFDYKSTLQELVQADSKKAIEYRIISETGPAHNRSFEAIVLLDGI 204 Query: 199 APAQGMDCSKRAAEQVAA 216 +G+ +K+ AEQ AA Sbjct: 205 TLGRGIGKTKKEAEQQAA 222 >gi|30263852|ref|NP_846229.1| ribonuclease III [Bacillus anthracis str. Ames] gi|47529278|ref|YP_020627.1| ribonuclease III [Bacillus anthracis str. 'Ames Ancestor'] gi|49186699|ref|YP_029951.1| ribonuclease III [Bacillus anthracis str. Sterne] gi|49478414|ref|YP_037910.1| ribonuclease III [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165873286|ref|ZP_02217894.1| ribonuclease III [Bacillus anthracis str. A0488] gi|167636662|ref|ZP_02394952.1| ribonuclease III [Bacillus anthracis str. A0442] gi|167642023|ref|ZP_02400254.1| ribonuclease III [Bacillus anthracis str. A0193] gi|170689645|ref|ZP_02880826.1| ribonuclease III [Bacillus anthracis str. A0465] gi|177655964|ref|ZP_02937116.1| ribonuclease III [Bacillus anthracis str. A0174] gi|190565836|ref|ZP_03018755.1| ribonuclease III [Bacillus anthracis Tsiankovskii-I] gi|196035867|ref|ZP_03103269.1| ribonuclease III [Bacillus cereus W] gi|196042325|ref|ZP_03109601.1| ribonuclease III [Bacillus cereus NVH0597-99] gi|196047446|ref|ZP_03114658.1| ribonuclease III [Bacillus cereus 03BB108] gi|218904979|ref|YP_002452813.1| ribonuclease III [Bacillus cereus AH820] gi|225865830|ref|YP_002751208.1| ribonuclease III [Bacillus cereus 03BB102] gi|227813243|ref|YP_002813252.1| ribonuclease III [Bacillus anthracis str. CDC 684] gi|228916486|ref|ZP_04080052.1| Ribonuclease 3 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928897|ref|ZP_04091929.1| Ribonuclease 3 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935163|ref|ZP_04097990.1| Ribonuclease 3 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947568|ref|ZP_04109858.1| Ribonuclease 3 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229092891|ref|ZP_04224025.1| Ribonuclease 3 [Bacillus cereus Rock3-42] gi|229123363|ref|ZP_04252567.1| Ribonuclease 3 [Bacillus cereus 95/8201] gi|229186089|ref|ZP_04313258.1| Ribonuclease 3 [Bacillus cereus BGSC 6E1] gi|229599971|ref|YP_002868086.1| ribonuclease III [Bacillus anthracis str. A0248] gi|254683443|ref|ZP_05147303.1| ribonuclease III [Bacillus anthracis str. CNEVA-9066] gi|254721380|ref|ZP_05183169.1| ribonuclease III [Bacillus anthracis str. A1055] gi|254735887|ref|ZP_05193593.1| ribonuclease III [Bacillus anthracis str. Western North America USA6153] gi|254739520|ref|ZP_05197217.1| ribonuclease III [Bacillus anthracis str. Kruger B] gi|254751172|ref|ZP_05203211.1| ribonuclease III [Bacillus anthracis str. Vollum] gi|254756720|ref|ZP_05208749.1| ribonuclease III [Bacillus anthracis str. Australia 94] gi|38372420|sp|Q81WI8|RNC_BACAN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|81395098|sp|Q6HEW6|RNC_BACHK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735366|sp|B7JJT6|RNC_BACC0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807235|sp|C3P5Q0|RNC_BACAA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807236|sp|C3L778|RNC_BACAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807237|sp|C1EP73|RNC_BACC3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|30258496|gb|AAP27715.1| ribonuclease III [Bacillus anthracis str. Ames] gi|47504426|gb|AAT33102.1| ribonuclease III [Bacillus anthracis str. 'Ames Ancestor'] gi|49180626|gb|AAT56002.1| ribonuclease III [Bacillus anthracis str. Sterne] gi|49329970|gb|AAT60616.1| ribonuclease III [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164710971|gb|EDR16540.1| ribonuclease III [Bacillus anthracis str. A0488] gi|167510022|gb|EDR85437.1| ribonuclease III [Bacillus anthracis str. A0193] gi|167527913|gb|EDR90729.1| ribonuclease III [Bacillus anthracis str. A0442] gi|170666390|gb|EDT17172.1| ribonuclease III [Bacillus anthracis str. A0465] gi|172079908|gb|EDT65015.1| ribonuclease III [Bacillus anthracis str. A0174] gi|190562755|gb|EDV16721.1| ribonuclease III [Bacillus anthracis Tsiankovskii-I] gi|195991516|gb|EDX55482.1| ribonuclease III [Bacillus cereus W] gi|196021754|gb|EDX60449.1| ribonuclease III [Bacillus cereus 03BB108] gi|196026847|gb|EDX65478.1| ribonuclease III [Bacillus cereus NVH0597-99] gi|218539426|gb|ACK91824.1| ribonuclease III [Bacillus cereus AH820] gi|225790989|gb|ACO31206.1| ribonuclease III [Bacillus cereus 03BB102] gi|227006213|gb|ACP15956.1| ribonuclease III [Bacillus anthracis str. CDC 684] gi|228597265|gb|EEK54916.1| Ribonuclease 3 [Bacillus cereus BGSC 6E1] gi|228660139|gb|EEL15775.1| Ribonuclease 3 [Bacillus cereus 95/8201] gi|228690513|gb|EEL44296.1| Ribonuclease 3 [Bacillus cereus Rock3-42] gi|228812088|gb|EEM58419.1| Ribonuclease 3 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824528|gb|EEM70333.1| Ribonuclease 3 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830704|gb|EEM76309.1| Ribonuclease 3 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843065|gb|EEM88147.1| Ribonuclease 3 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229264379|gb|ACQ46016.1| ribonuclease III [Bacillus anthracis str. A0248] Length = 245 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G+E F+ + + + G F D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++ +A G SK+ AEQ AAAE LK+ Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240 >gi|297675037|ref|XP_002815506.1| PREDICTED: ribonuclease 3-like [Pongo abelii] Length = 1374 Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1283 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1284 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 958 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1012 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 1013 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1060 >gi|157326505|gb|ABV44384.1| ASL1/DROSHA fusion [Mus musculus] Length = 756 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 488 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 547 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 548 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 606 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWA-----HAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 607 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 665 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 666 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 713 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 340 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 394 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 395 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 442 >gi|33585614|gb|AAH55696.1| Rnasen protein [Mus musculus] Length = 780 Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 512 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 571 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 572 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 630 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 631 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 689 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 690 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 737 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 364 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 418 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 419 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 466 >gi|73953922|ref|XP_536514.2| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 1 [Canis familiaris] Length = 1328 Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1060 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1119 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1120 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1178 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1179 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1237 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1238 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1285 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 912 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 966 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 967 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1014 >gi|332251722|ref|XP_003274996.1| PREDICTED: ribonuclease 3-like [Nomascus leucogenys] Length = 1331 Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1063 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1122 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1123 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1181 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1182 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1240 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1241 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1288 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 915 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 969 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 970 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1017 >gi|149732818|ref|XP_001500764.1| PREDICTED: ribonuclease type III, nuclear isoform 1 [Equus caballus] Length = 1374 Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1283 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1284 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 958 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1012 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 1013 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1060 >gi|114600815|ref|XP_526954.2| PREDICTED: ribonuclease III, nuclear isoform 11 [Pan troglodytes] gi|114600817|ref|XP_001157424.1| PREDICTED: ribonuclease III, nuclear isoform 4 [Pan troglodytes] gi|114600819|ref|XP_001157533.1| PREDICTED: ribonuclease III, nuclear isoform 6 [Pan troglodytes] gi|332821657|ref|XP_001157472.2| PREDICTED: ribonuclease 3 isoform 5 [Pan troglodytes] Length = 1374 Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1283 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1284 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 958 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1012 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 1013 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1060 >gi|73953920|ref|XP_868251.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 8 [Canis familiaris] Length = 1297 Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1029 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1088 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1089 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1147 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1148 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1206 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1207 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1254 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 881 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 935 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 936 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 983 >gi|155030234|ref|NP_037367.3| ribonuclease 3 isoform 1 [Homo sapiens] gi|20139357|sp|Q9NRR4|RNC_HUMAN RecName: Full=Ribonuclease 3; AltName: Full=Protein Drosha; AltName: Full=Ribonuclease III; Short=RNase III; AltName: Full=p241 Length = 1374 Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1283 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1284 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 958 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1012 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 1013 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1060 >gi|326773636|ref|ZP_08232919.1| ribonuclease III [Actinomyces viscosus C505] gi|326636866|gb|EGE37769.1| ribonuclease III [Actinomyces viscosus C505] Length = 264 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/193 (36%), Positives = 95/193 (49%), Gaps = 7/193 (3%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALTH S +H + ERLEFLGD +LG++++ L+ EG+L+ + V Sbjct: 29 LLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHPEVPEGQLAKMRAATV 88 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + VAR+L L FI++ SI +D VE+LI A YL G+E T V Sbjct: 89 SEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETRTVV 148 Query: 140 DKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + R L S + R D KT LQE P Y+VT +GPDH FT + Sbjct: 149 TRLVS-RFLDSARTRGAGLDWKTSLQELTAVHQLGNPAYEVTG-TGPDHQRVFTASAIVD 206 Query: 197 GLAPAQGMDCSKR 209 G QG SK+ Sbjct: 207 GEVLGQGTGSSKK 219 >gi|15672784|ref|NP_266958.1| ribonuclease III [Lactococcus lactis subsp. lactis Il1403] gi|13878708|sp|Q9CHD0|RNC_LACLA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|12723723|gb|AAK04900.1|AE006313_7 ribonuclease III [Lactococcus lactis subsp. lactis Il1403] gi|326406354|gb|ADZ63425.1| ribonuclease III [Lactococcus lactis subsp. lactis CV56] Length = 231 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 7/219 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L+ G F + LL+ A THSS ++ + + ERLEFLGD L L+IS L+ + Sbjct: 8 LKNDYGLVFNDEDLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYLYRTYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGELS +S+V E+ + +R F+R+ K + ++ E+ + Sbjct: 68 EKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLFEAFLG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL++D G++ F+ ++ +K+ + + D KTELQE T YK+ G Sbjct: 128 ALFIDQGMDEVRKFI-QHVVIPHVKNDDYVKVIDYKTELQEVLQIGGETTISYKILKEEG 186 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P HD F V +G +G+ SK+ AEQ AA +K Sbjct: 187 PAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225 >gi|268319230|ref|YP_003292886.1| ribonuclease III [Lactobacillus johnsonii FI9785] gi|262397605|emb|CAX66619.1| ribonuclease III [Lactobacillus johnsonii FI9785] Length = 226 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 100/207 (48%), Gaps = 7/207 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L+K+ G F N LLE A THSS + H ++ YE+LEFLGD +L L +S L+ HF Sbjct: 8 QNLKKKYGIKFNNEKLLENAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSDYLYRHFP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ +++V E S+ A E I + K ++ DV E+ Sbjct: 68 RLNEGELTRMRSNIVRTEGFSEFAIECGFPEEIDLGKGEEKAGARKRKTLLEDVFEAFNG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL+LD G+ F+ + G F RD KTELQE V EY+V S Sbjct: 128 ALFLDQGMPAVQHFL-HLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQVI--SE 184 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 + P F V + ++G ++G +K+ Sbjct: 185 DESKPSFKVQLLVNGEKVSEGQGRNKK 211 >gi|40455575|gb|AAR85911.1| ribonuclease III-like protein [Rattus norvegicus] Length = 288 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 115/233 (49%), Gaps = 22/233 (9%) Query: 5 RYSTLEKRIGYAFANRSLLEKALT-------HSSISHSYQESYERLEFLGDRILGLLIST 57 + + E+ IG F + LL +A T H ++ H+ +R+EFLGD I+ L+ + Sbjct: 20 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHN-----QRMEFLGDSIMQLVATE 74 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF HF EG L++ +SLV+ T ++VA EL + + +++D K + T AD Sbjct: 75 YLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLAD 133 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWA-----HAKF 169 ++ES IAALY+D +E TF++ + R LK + D K++LQ+ K Sbjct: 134 LLESFIAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKE 192 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P YK GP H +TV V G G S + AE AA + L++ Sbjct: 193 PDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 245 >gi|325068495|ref|ZP_08127168.1| ribonuclease III [Actinomyces oris K20] Length = 264 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/193 (36%), Positives = 95/193 (49%), Gaps = 7/193 (3%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALTH S +H + ERLEFLGD +LG++++ L+ EG+L+ + V Sbjct: 29 LLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHPEVPEGQLAKMRAATV 88 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + VAR+L L FI++ SI +D VE+LI A YL G+E T V Sbjct: 89 SEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETRTVV 148 Query: 140 DKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + R L S + R D KT LQE P Y+VT +GPDH FT + Sbjct: 149 TRLVS-RFLDSARTRGAGLDWKTSLQELTAVHQLGNPAYEVTG-TGPDHQRVFTASAIVD 206 Query: 197 GLAPAQGMDCSKR 209 G QG SK+ Sbjct: 207 GEVLGQGTGSSKK 219 >gi|87301736|ref|ZP_01084576.1| putative ribonuclease III [Synechococcus sp. WH 5701] gi|87283953|gb|EAQ75907.1| putative ribonuclease III [Synechococcus sp. WH 5701] Length = 259 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 106/205 (51%), Gaps = 7/205 (3%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +E+ALTHSS ++ERLEFLGD +L L + L H + G+ S LVS Sbjct: 45 IEEALTHSSAGRPI--NHERLEFLGDAVLRLAAAEFLERHHRAMDVGQRSALRAQLVSDR 102 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141 +++ + + + + + D + T I+A++ E+LI LY G +E T++ Sbjct: 103 WLAELGKRCGIEAMVHLGPVAAGDSAARQT-IRAEICEALIGGLYETTGSLEPVHTWLTP 161 Query: 142 YWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGL 198 +W++ A L + +R + KT LQEW+ A+ P Y+ RS DP RF V++ G Sbjct: 162 HWQRSAKELLADPYRHNWKTGLQEWSQAQGLGLPNYRCEERSRRHGDPRRFHCSVDLKGQ 221 Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223 +G S+R AEQ AA L+++ Sbjct: 222 PVGEGWGGSRRDAEQQAARSALEQQ 246 >gi|329767729|ref|ZP_08259245.1| ribonuclease III [Gemella haemolysans M341] gi|328838830|gb|EGF88424.1| ribonuclease III [Gemella haemolysans M341] Length = 237 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 9/225 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNH 62 +TL K+ G+ + A +HSS ++ + +YERLEFLGD ++ L S LF Sbjct: 11 NTLNKKYGFNLKFSENFKNAFSHSSYTNEKRIAKHLNYERLEFLGDAVVELTTSEFLFKK 70 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EGEL+ S+V +T + A +L L I + K ++ AD+ ES Sbjct: 71 FYELPEGELTKLRASIVCEKTLVKYALQLGLDKCIYLGKGEEKMGGRSRAALLADIFESF 130 Query: 123 IAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTF 179 A+YL+ +EV TF+ + + + L+ F D KT LQE+ + K G EY V Sbjct: 131 TGAMYLESNLEVVKTFLHNTLFTEVQDLEYHSF-VDYKTILQEYISKIKLG-EIEYVVLD 188 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +GP H FT + I G G +K+ +EQ++A + L++ G Sbjct: 189 STGPSHSKTFTSAILIGGKQYGSGTATTKKESEQLSAKQALEKLG 233 >gi|114566311|ref|YP_753465.1| ribonuclease III [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318607|sp|Q0AYW0|RNC_SYNWW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|114337246|gb|ABI68094.1| RNAse III [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 233 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 5/209 (2%) Query: 17 FANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 +++ L+ ALTH S + + +RLEFLGD +L L+++ L+NH+ EGEL+ Sbjct: 19 YSSNELITMALTHPSYAQEKNTVANNQRLEFLGDAVLNLVVAEYLYNHYGRKAEGELTKI 78 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 +V + + AR ++L ++ + SI AD VE++I A+YLD G+E Sbjct: 79 RAKVVCEDALAIFARNINLGQYLLLGRGEEMSGGRKRKSILADAVEAVIGAIYLDQGLET 138 Query: 135 AGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 F+ + ++ SG + D K++LQE A+ Y + SGP H F Sbjct: 139 VQRFIIRQLEELISETASGDY-YDYKSKLQELVQARDKENVSYAIIEESGPAHAKVFVAG 197 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V A G SK+ AEQ AA +VL+ Sbjct: 198 VYYREQLLATGEGKSKKEAEQKAAQKVLQ 226 >gi|83814847|ref|YP_445467.1| ribonuclease III [Salinibacter ruber DSM 13855] gi|83756241|gb|ABC44354.1| ribonuclease III [Salinibacter ruber DSM 13855] Length = 248 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 104/220 (47%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + +E+ +G + S +ALTH S+ + S ERLEFLGD +L + + +L++ Sbjct: 19 AAIEQLVGRPVDDLSHYRRALTHRSLLRVHPARTFRSNERLEFLGDALLDVFVGEVLYDR 78 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ LVS + AR L L + +S + + SI AD E+ Sbjct: 79 FPEKDEGALTRLRARLVSERPLATYARGLGLGPHLLMSENAAEGDGRDNPSILADAFEAF 138 Query: 123 IAALYLDGGIEVAGTFV-DKYWKQRALKSGKFRRDA-KTELQEWAHAKFGVTPEYKVTFR 180 + A+YLD G E A FV D+ L+ R D K++L E A P Y V Sbjct: 139 VGAVYLDLGHEAARGFVQDRVLAPVDLEDVATRDDNYKSQLLEHLQALGRPQPTYHVVEE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP HD FTV V + A +G SK+ AEQ AA L Sbjct: 199 KGPSHDKTFTVEVRVGDAAYERGTAGSKQDAEQQAARRTL 238 >gi|27552890|gb|AAH41162.1| RNASEN protein [Homo sapiens] Length = 722 Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 454 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 513 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 514 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 572 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 573 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 631 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 632 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 679 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 306 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 360 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 361 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 408 >gi|297294058|ref|XP_001085611.2| PREDICTED: ribonuclease 3 isoform 1 [Macaca mulatta] Length = 1337 Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1187 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1246 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1247 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1294 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 921 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 975 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 976 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1023 >gi|291395193|ref|XP_002714143.1| PREDICTED: ribonuclease III, nuclear [Oryctolagus cuniculus] Length = 1338 Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1070 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1129 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1130 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1188 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1189 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1247 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1248 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1295 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 922 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 976 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 977 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1024 >gi|119631172|gb|EAX10767.1| ribonuclease III, nuclear, isoform CRA_a [Homo sapiens] gi|119631173|gb|EAX10768.1| ribonuclease III, nuclear, isoform CRA_a [Homo sapiens] Length = 1349 Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1081 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1140 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1141 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1199 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1200 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1258 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1259 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1306 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 933 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 987 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 988 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1035 >gi|155030236|ref|NP_001093882.1| ribonuclease 3 isoform 2 [Homo sapiens] gi|114600827|ref|XP_001157762.1| PREDICTED: ribonuclease 3 isoform 10 [Pan troglodytes] Length = 1337 Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1187 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1246 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1247 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1294 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 921 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 975 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 976 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1023 >gi|65321177|ref|ZP_00394136.1| COG0571: dsRNA-specific ribonuclease [Bacillus anthracis str. A2012] gi|118479071|ref|YP_896222.1| ribonuclease III [Bacillus thuringiensis str. Al Hakam] gi|118418296|gb|ABK86715.1| RNAse III [Bacillus thuringiensis str. Al Hakam] Length = 262 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 36 FKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 95 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 96 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 155 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G+E F+ + + + G F D K++LQE EY++ Sbjct: 156 FIGALYLDQGLETVWGFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 214 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++ +A G SK+ AEQ AAAE LK+ Sbjct: 215 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 257 >gi|296194850|ref|XP_002745134.1| PREDICTED: ribonuclease 3 isoform 1 [Callithrix jacchus] Length = 1374 Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1283 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1284 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 958 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1012 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 1013 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1060 >gi|114600829|ref|XP_001157712.1| PREDICTED: ribonuclease III, nuclear isoform 9 [Pan troglodytes] Length = 1306 Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1038 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1097 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1098 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1156 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1157 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1215 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1216 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1263 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 890 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 944 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 945 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 992 >gi|145593838|ref|YP_001158135.1| ribonuclease III [Salinispora tropica CNB-440] gi|145303175|gb|ABP53757.1| RNAse III [Salinispora tropica CNB-440] Length = 252 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 103/198 (52%), Gaps = 13/198 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE G A + LLE+ALTH S ++ + ERLEFLGD +LG++I+T LF++ Sbjct: 14 LEAAFGVAL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDL 72 Query: 67 KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ S+V+ ++VAR L L ++ + SI AD +E+L+ Sbjct: 73 PEGQLAKLRASVVNMRALAEVARGLGPTGLGPYLLLGKGEESTGGRDKASILADTLEALL 132 Query: 124 AALYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 A+YL+ G+E T + D + A + D KT LQE A+ PEY++ Sbjct: 133 GAIYLESGLETVATVIHRLFDPLMAESAGRGAAL--DWKTSLQELTAAQGLGVPEYRIEG 190 Query: 180 RSGPDHDPRFTVVVEISG 197 +GPDH FT V ++G Sbjct: 191 -TGPDHLKTFTAWVVVAG 207 >gi|229019045|ref|ZP_04175885.1| Ribonuclease 3 [Bacillus cereus AH1273] gi|228742247|gb|EEL92407.1| Ribonuclease 3 [Bacillus cereus AH1273] Length = 245 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F++ LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G+E F+ + + + G F D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEVVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQ 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++ +A G SK+ AEQ AAAE LK+ Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240 >gi|223986082|ref|ZP_03636108.1| hypothetical protein HOLDEFILI_03416 [Holdemania filiformis DSM 12042] gi|223961955|gb|EEF66441.1| hypothetical protein HOLDEFILI_03416 [Holdemania filiformis DSM 12042] Length = 247 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 5/218 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65 LE R G + L+E+A HSS + +++ ERLEF+GD +L L +S LF Sbjct: 7 LEAR-GIHCKDSRLIEQAFVHSSYVNEHKQLKHDNERLEFMGDAVLQLWVSDKLFRLDPP 65 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG ++ LV E + AR+L L SF+++ K SI AD+ E+++ A Sbjct: 66 LDEGHMTTFRAQLVCEEALAIYARQLQLNSFLKLGVGEEKTGGRERDSIIADMFEAMLGA 125 Query: 126 LYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LY D G+E + + + D KT+LQE+ + T Y+V +GP Sbjct: 126 LYEDSGMEPIDNILTEVITPHLSHPEEPIIVDYKTKLQEYVQSDSRKTVTYEVINTTGPS 185 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + P F V V++ G+ G SK+ AEQ LKR Sbjct: 186 NKPEFEVQVKLEGIILGTGKGNSKKKAEQKPLRTRLKR 223 >gi|228940937|ref|ZP_04103496.1| Ribonuclease 3 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228966797|ref|ZP_04127841.1| Ribonuclease 3 [Bacillus thuringiensis serovar sotto str. T04001] gi|228792896|gb|EEM40454.1| Ribonuclease 3 [Bacillus thuringiensis serovar sotto str. T04001] gi|228818773|gb|EEM64839.1| Ribonuclease 3 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 225 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 110/220 (50%), Gaps = 7/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF + Sbjct: 2 FQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYP 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGEL+ ++V + + A EL S + + ++ ADV E+ I Sbjct: 62 TMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIG 121 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G+E F+ + + + G F D K++LQE EY++ G Sbjct: 122 ALYLDQGLETVWEFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQEKG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P H+ F V ++ +A G SK+ AEQ AAAE LK+ Sbjct: 181 PAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 220 >gi|311739750|ref|ZP_07713585.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035] gi|311305566|gb|EFQ81634.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035] Length = 256 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 104/204 (50%), Gaps = 7/204 (3%) Query: 23 LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 L ALTH S ++ + + ERLEFLGD +LGL +++ L+ + S E ++S S+VS Sbjct: 38 LRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVASQLYITYPSRPESDISKMRASIVS 97 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 S +ARE++L I + + SI AD E++ A+Y + G E A + Sbjct: 98 RYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTEAIFGAIYREHGFETARDVIL 157 Query: 141 KYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + + ++ A SG+ D KT LQE P Y T +GP+HD F V ++G Sbjct: 158 RLFAEKIDNATVSGR-HLDWKTTLQELCAELKAPMPVYSAT-STGPEHDQTFNAVATVAG 215 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221 L G+ +K+ AEQ AA E + Sbjct: 216 LTVGNGVGHNKKLAEQQAAQEACQ 239 >gi|227543196|ref|ZP_03973245.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51866] gi|227181005|gb|EEI61977.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51866] Length = 250 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/216 (34%), Positives = 110/216 (50%), Gaps = 18/216 (8%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S ++ + ERLEFLGD +LG ++ LF + S+ E +S +V Sbjct: 37 LLRLALTHRSFANENGGLPNNERLEFLGDSVLGCSVAWKLFETYPSSPESVISKMRARIV 96 Query: 80 SAETCSQVARELDLASFI-----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 S + +ARE+ L +I + +D R+ SI AD E+L A++L+ G E Sbjct: 97 SRFGLADIAREIGLGKYILLGRGEILTDGREK-----DSILADTTEALFGAIFLEHGFET 151 Query: 135 AGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 A + + ++ + S D KT LQE A + PEY+ +F +GPDHD FT Sbjct: 152 ARHTILTLFHEKIVHASSDSIHTDWKTLLQERAAERKLPMPEYEASF-TGPDHDRFFTAT 210 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAE---VLKREGI 225 I G G +K+AAEQ+AA + VL+ + I Sbjct: 211 AIIDGKVVGTGQGHNKKAAEQLAAKQAVTVLREQNI 246 >gi|229031479|ref|ZP_04187479.1| Ribonuclease 3 [Bacillus cereus AH1271] gi|228729768|gb|EEL80748.1| Ribonuclease 3 [Bacillus cereus AH1271] Length = 245 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F++ LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G+E F+ + + + G F D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEVVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++ +A G SK+ AEQ AAAE LK+ Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240 >gi|297463231|ref|XP_002702571.1| PREDICTED: ribonuclease III, nuclear [Bos taurus] gi|297487774|ref|XP_002696435.1| PREDICTED: ribonuclease III, nuclear-like isoform 1 [Bos taurus] gi|296475747|gb|DAA17862.1| ribonuclease III, nuclear-like isoform 1 [Bos taurus] Length = 1367 Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1099 KLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1158 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1159 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1217 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1218 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1276 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1277 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1324 Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 951 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1005 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 1006 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1053 >gi|229174515|ref|ZP_04302047.1| Ribonuclease 3 [Bacillus cereus MM3] gi|228609075|gb|EEK66365.1| Ribonuclease 3 [Bacillus cereus MM3] Length = 245 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F++ LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G+E F+ + + + G F D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++ +A G SK+ AEQ AAAE LK+ Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240 >gi|309378209|emb|CBX23153.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 239 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 105/197 (53%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HAAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + +R +K F+ +DAKT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFSER-VKRADFQNQAKDAKTALQEALQARRFALPKYRIEEQIG 186 Query: 183 PDHDPRFTVVVEISGLA 199 +D F + ++ L Sbjct: 187 HANDSMFVISCDLGELG 203 >gi|296194852|ref|XP_002745135.1| PREDICTED: ribonuclease 3 isoform 2 [Callithrix jacchus] Length = 1337 Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1187 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1246 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1247 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1294 Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 921 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 975 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 976 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1023 >gi|149732820|ref|XP_001500777.1| PREDICTED: ribonuclease type III, nuclear isoform 2 [Equus caballus] Length = 1337 Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1187 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1246 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1247 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1294 Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 921 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 975 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 976 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1023 >gi|194306545|ref|NP_081075.3| ribonuclease 3 [Mus musculus] gi|194328670|ref|NP_001123621.1| ribonuclease 3 [Mus musculus] gi|81882947|sp|Q5HZJ0|RNC_MOUSE RecName: Full=Ribonuclease 3; AltName: Full=Protein Drosha; AltName: Full=Ribonuclease III; Short=RNase III gi|57242920|gb|AAH88999.1| Rnasen protein [Mus musculus] gi|74184402|dbj|BAE25729.1| unnamed protein product [Mus musculus] gi|74215950|dbj|BAE28629.1| unnamed protein product [Mus musculus] Length = 1373 Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1105 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1164 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1165 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1223 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1224 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1282 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1283 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1330 Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 957 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1011 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 1012 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1059 >gi|255325275|ref|ZP_05366381.1| ribonuclease III [Corynebacterium tuberculostearicum SK141] gi|255297840|gb|EET77151.1| ribonuclease III [Corynebacterium tuberculostearicum SK141] Length = 256 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 104/204 (50%), Gaps = 7/204 (3%) Query: 23 LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 L ALTH S ++ + + ERLEFLGD +LGL +++ L+ + S E ++S S+VS Sbjct: 38 LRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVASQLYITYPSRPESDISKMRASIVS 97 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 S +ARE++L I + + SI AD E++ A+Y + G E A + Sbjct: 98 RYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTEAIFGAIYREHGFETARDVIL 157 Query: 141 KYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + + ++ A SG+ D KT LQE P Y T +GP+HD F V ++G Sbjct: 158 RLFAEKIDNATVSGR-HLDWKTTLQELCAELKAPMPVYSAT-STGPEHDQTFNAVATVAG 215 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221 L G+ +K+ AEQ AA E + Sbjct: 216 LTVGNGVGHNKKLAEQQAAQEACQ 239 >gi|15615052|ref|NP_243355.1| ribonuclease III [Bacillus halodurans C-125] gi|20139354|sp|Q9KA05|RNC_BACHD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|10175109|dbj|BAB06208.1| ribonuclease III [Bacillus halodurans C-125] Length = 263 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 11/223 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + L + + FAN+ LL +A THSS + ++ + ERLEFLGD +L L +S L+ Sbjct: 35 FDELLRTLNLTFANKKLLVQAFTHSSYVNEHRIQSCKDNERLEFLGDAVLELAVSQYLYK 94 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F+ EG+++ S+V + +Q+A EL + + ++ ADV ES Sbjct: 95 AFEQMSEGDMTKLRASIVCEPSLAQLAEELHFGELVLLGKGEEMTGGRKRPALLADVFES 154 Query: 122 LIAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 + ALYLD G++ F+++ Y K + G F D K++LQE+ Y++ Sbjct: 155 FVGALYLDQGMDAVYLFLERTIYPK---ISEGAFSHMMDFKSQLQEFIQRDNLGHIHYEI 211 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP H+ F V ++ G SK+ AEQ AA + L Sbjct: 212 VQERGPAHNREFVSEVVLNNETLGVGTGRSKKEAEQHAAQQAL 254 >gi|237785779|ref|YP_002906484.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385] gi|237758691|gb|ACR17941.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385] Length = 246 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 97/201 (48%), Gaps = 5/201 (2%) Query: 23 LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 L ALTH S ++ + ERLEFLGD +LGL ++ L+ + E E+S +V+ Sbjct: 43 LRLALTHRSFANENGMLPNNERLEFLGDAVLGLSVAERLYRDYPDRTESEISKMRAGVVN 102 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + VARE+ L + + + SI AD E+++ A+YL+ G + A + Sbjct: 103 MYALADVAREIGLGDHVLLGRGEQLTNGKDKNSILADTTEAMLGAIYLEHGFQTAKDVIL 162 Query: 141 KYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + +K R + + D KTEL E + PEY T SGP HDP FT V + G Sbjct: 163 RLFKSRIESAPTVGLHMDWKTELLEKIAGRGLGEPEYNTTI-SGPAHDPHFTSTVSLQGK 221 Query: 199 APAQGMDCSKRAAEQVAAAEV 219 G +K+ AE AA E Sbjct: 222 VWGHGEGHTKKEAEHHAAREA 242 >gi|126321160|ref|XP_001375491.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 1388 Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1108 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1167 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1168 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1226 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1227 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1285 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1286 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1333 Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 960 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1014 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 1015 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1062 >gi|312869965|ref|ZP_07730104.1| ribonuclease III [Lactobacillus oris PB013-T2-3] gi|311094550|gb|EFQ52855.1| ribonuclease III [Lactobacillus oris PB013-T2-3] Length = 232 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 107/220 (48%), Gaps = 7/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI--SHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 L K F++ LL +A T +S H +Q + YER+EFLGD +L L++S ++ + Sbjct: 9 LAKEFDIHFSDPRLLAEAFTQASYVNEHPHQNLKFYERIEFLGDAVLELIVSEYIYKRYP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G+L+ ++V ++ S+ A+E +IR+ + D+ ES + Sbjct: 69 ELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEELAGARQRPGLLCDIFESFVG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G FV + + L G F DAKT LQE+ V EY + SG Sbjct: 129 ALYLDQGRPAVEKFVRRVIFPK-LDMGWFDHAVDAKTSLQEFLQRDGDVLIEYHLLEESG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +++P F V V +G A G SK+ AE AA LK+ Sbjct: 188 TENNPAFHVDVAANGQVIADGQGSSKKQAEMQAAQRALKK 227 >gi|37994704|gb|AAH60265.1| Rnasen protein [Mus musculus] Length = 1231 Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 963 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1022 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1023 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1081 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1082 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1140 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1141 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1188 Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 815 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 869 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 870 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 917 >gi|194676595|ref|XP_591998.4| PREDICTED: ribonuclease III, nuclear isoform 2 [Bos taurus] gi|297487776|ref|XP_002696436.1| PREDICTED: ribonuclease III, nuclear-like isoform 2 [Bos taurus] gi|296475748|gb|DAA17863.1| ribonuclease III, nuclear-like isoform 2 [Bos taurus] Length = 1330 Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1062 KLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1121 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1122 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1180 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1181 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1239 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1240 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1287 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 914 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 968 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 969 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1016 >gi|229162785|ref|ZP_04290742.1| Ribonuclease 3 [Bacillus cereus R309803] gi|228620667|gb|EEK77536.1| Ribonuclease 3 [Bacillus cereus R309803] Length = 245 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 110/223 (49%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G+E F+ + + + G F D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEVVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++ +A G SK+ AEQ AAAE LK+ Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240 >gi|329947035|ref|ZP_08294447.1| ribonuclease III [Actinomyces sp. oral taxon 170 str. F0386] gi|328526846|gb|EGF53859.1| ribonuclease III [Actinomyces sp. oral taxon 170 str. F0386] Length = 267 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/194 (35%), Positives = 97/194 (50%), Gaps = 7/194 (3%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LL+ ALTH S +H + ERLEFLGD +LG++++ L+ + EG+L+ + Sbjct: 28 GLLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHATVPEGQLAKMRAAT 87 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 VS + VAR+L L FI++ SI +D VE+LI A YL G+E T Sbjct: 88 VSEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETRTV 147 Query: 139 VDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 V + R L S + R D KT LQE A P Y+V+ +GPDH FT + Sbjct: 148 VTRLVS-RFLDSARTRGAGLDWKTSLQELTAAHQLGNPGYEVSG-TGPDHQRVFTASAVV 205 Query: 196 SGLAPAQGMDCSKR 209 G +G SK+ Sbjct: 206 DGQVMGRGTGSSKK 219 >gi|119713398|gb|ABL97460.1| ribonuclease III [uncultured marine bacterium HF130_81H07] Length = 220 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 11/222 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + LEK +GY+F + L KALTH S S +E+ E EFLGD +L L+IS +L F Sbjct: 5 FKKLEKNLGYSFQKKETLVKALTHVSKS---KENNEVFEFLGDSVLNLIISQILVEKFSM 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG LS+ + LVS T +++A++L+L SFI L +I + +E++ A Sbjct: 62 DDEGTLSLMRSKLVSRTTLNKIAKKLELDSFIVKGDSLAGQETP--ENILGNSLEAIFGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +Y + G+E ++ + + L+ G +++KT LQE+ P Y + Sbjct: 120 VYKESGLEFIQKIIETTFAKEIELLREGNL-KNSKTLLQEYCQKNKFSLPTYNQIEK--K 176 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 ++ F V ++ + ++G S + AEQ AAA +LK+ G+ Sbjct: 177 ENIYPFIVTCKLDD-SSSEGFGKSLKLAEQDAAARLLKKIGV 217 >gi|225024664|ref|ZP_03713856.1| hypothetical protein EIKCOROL_01546 [Eikenella corrodens ATCC 23834] gi|224942553|gb|EEG23762.1| hypothetical protein EIKCOROL_01546 [Eikenella corrodens ATCC 23834] Length = 257 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 101/193 (52%), Gaps = 5/193 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++ +G++F N L E+ALTH S S ++ ER EF+GD IL ++ +LF+ F E Sbjct: 25 LQRHLGHSFQNPRLFEQALTHRSYS---AQNNERFEFVGDAILDYSVAKMLFDAFPGYSE 81 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +LV+ + +++AR + + + + K SI AD VE+L+AA+ Sbjct: 82 GELSRLRANLVNQDVLAEIARSMGVGDALYLGVGELKSGGFDRPSILADAVEALLAAISF 141 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D A V + + +R + +D KT LQE A+ P+Y++ +SG D Sbjct: 142 DADFAAAEQTVRRLFARRIANIDLSNQGKDPKTLLQEALQARRLPLPKYRIEHQSGEGCD 201 Query: 187 PRFTVVVEISGLA 199 RF + ++ LA Sbjct: 202 ARFDIACDLGELA 214 >gi|295693172|ref|YP_003601782.1| ribonuclease iii [Lactobacillus crispatus ST1] gi|295031278|emb|CBL50757.1| Ribonuclease III [Lactobacillus crispatus ST1] Length = 229 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 108/221 (48%), Gaps = 11/221 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64 L+ F + LLE+A THSS S+ + YE+LEFLGD +L L +S ++ H+ Sbjct: 10 LKDEYNIVFNDEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAVSNYVYLHYP 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ +++V E S+ A E I + + K ++ DV E+ Sbjct: 70 KLNEGELTRLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLLEDVFEAFNG 129 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL+LD G+ F+ + G+F RD KT+LQE V EY V S Sbjct: 130 ALFLDQGMPAVEHFL-HLTVYPLIDKGEFDDSRDYKTDLQEVLQQDGPVNIEYTVISESQ 188 Query: 183 -PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P H F V ++I+G ++G +K+AAEQ AA L++ Sbjct: 189 LPSH---FVVELKINGKVESKGEGHNKKAAEQQAAKVALQK 226 >gi|52141634|ref|YP_085190.1| ribonuclease III [Bacillus cereus E33L] gi|81686565|sp|Q636H7|RNC_BACCZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|51975103|gb|AAU16653.1| ribonuclease III [Bacillus cereus E33L] Length = 245 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 110/223 (49%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGGLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G+E F+ + + + G F D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++ +A G SK+ AEQ AAAE LK+ Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240 >gi|119631174|gb|EAX10769.1| ribonuclease III, nuclear, isoform CRA_b [Homo sapiens] Length = 1120 Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 852 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 911 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 912 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 970 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 971 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1029 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1030 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1077 Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 704 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 758 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 759 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 806 >gi|160903376|ref|YP_001568957.1| ribonuclease III [Petrotoga mobilis SJ95] gi|160361020|gb|ABX32634.1| Ribonuclease III [Petrotoga mobilis SJ95] Length = 253 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 108/205 (52%), Gaps = 11/205 (5%) Query: 21 SLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 S+L +AL H S + +S ERLEFLGD +L L+IS L+N++ + EGE+S + Sbjct: 33 SVLFEALCHKSYVFDNENIQRKLDSNERLEFLGDAVLELVISEFLYNNYHLS-EGEMS-K 90 Query: 75 FNSLVSAETC-SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 +++ +E ++VA +L L FI +S K SI +D +E+L A +YL G E Sbjct: 91 ARAIIGSEIILAEVALKLRLDDFIFLSKGEDKQGGRTKKSILSDTMEALFACIYLSCGYE 150 Query: 134 VAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 A ++ K K+ + G D KT+LQE K PEY + SGP H R+ V Sbjct: 151 KAKKYIIKNMKEYIENAVEGNIFLDYKTKLQELTQEKTKKLPEYVLLSASGPSHMKRYKV 210 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAA 216 V++ G SK+ AEQ+AA Sbjct: 211 AVKLDDEILGIGEGFSKKFAEQLAA 235 >gi|312871483|ref|ZP_07731577.1| ribonuclease III [Lactobacillus iners LEAF 3008A-a] gi|311093003|gb|EFQ51353.1| ribonuclease III [Lactobacillus iners LEAF 3008A-a] Length = 189 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 92/175 (52%), Gaps = 5/175 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + L+++ F N LLE+ALTHSS S+ +Q ++YE+LEFLGD +L L IS L+ HF Sbjct: 8 NELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISDYLYRHFP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGEL+ +++V E SQ A E + +++ K ++ DV E+ Sbjct: 68 NMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLEDVFEAFNG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 AL+LD G+ F+ + G F RD KTELQE + +YKV Sbjct: 128 ALFLDQGMPAVQHFL-HLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYKV 181 >gi|257870561|ref|ZP_05650214.1| ribonuclease III [Enterococcus gallinarum EG2] gi|257804725|gb|EEV33547.1| ribonuclease III [Enterococcus gallinarum EG2] Length = 230 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLIS 56 M+ + L++ G F + LLE+A THSS + ++ + ERLEFLGD +L L++S Sbjct: 1 MNTQLMNELKEDYGIVFHDVDLLEQAFTHSSYVNEHRNLHLSDNERLEFLGDAVLELIVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ EG+L+ ++V ++ S A++ +IR+ S+ Sbjct: 61 RYLYRELPDLPEGKLTKLRAAIVREDSLSMFAKDCRFDQYIRLGKGEENSGGRKRPSLLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + ALYLD G+E F+ + +K+G F D KT LQE V+ Sbjct: 121 DLFEAFLGALYLDQGLESVDGFLTAVVFPK-VKAGAFSHEMDHKTRLQEVLQRSGDVSIN 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y++T GP H+ F V + +G SK+ +EQ AA L Sbjct: 180 YRLTKEEGPAHERIFWTEVYCDDVLIGEGQGKSKKLSEQAAAENAL 225 >gi|320533365|ref|ZP_08034057.1| ribonuclease III [Actinomyces sp. oral taxon 171 str. F0337] gi|320134435|gb|EFW26691.1| ribonuclease III [Actinomyces sp. oral taxon 171 str. F0337] Length = 264 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/193 (36%), Positives = 95/193 (49%), Gaps = 7/193 (3%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALTH S +H + ERLEFLGD +LG++++ L+ EG+L+ + V Sbjct: 29 LLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHSEVPEGQLAKMRAATV 88 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + VAR+L L FI++ SI +D VE+LI A YL G+E T V Sbjct: 89 SEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETRTVV 148 Query: 140 DKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + R L S + R D KT LQE A P Y+V +GPDH FT + Sbjct: 149 TRLV-SRFLDSARTRGAGLDWKTSLQELAAVHQLGNPVYEVAG-TGPDHQRVFTASAIVD 206 Query: 197 GLAPAQGMDCSKR 209 G QG SK+ Sbjct: 207 GEVLGQGTGSSKK 219 >gi|269794452|ref|YP_003313907.1| RNAse III [Sanguibacter keddieii DSM 10542] gi|269096637|gb|ACZ21073.1| RNAse III [Sanguibacter keddieii DSM 10542] Length = 234 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/199 (36%), Positives = 97/199 (48%), Gaps = 5/199 (2%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +LTH S +H + ERLEFLGD +LGL+ + LF EG+L+ + V Sbjct: 27 LLVLSLTHRSFAHEAGGIPTNERLEFLGDAVLGLVAAEALFRRHPDRPEGDLAKMRAASV 86 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + VAR L L +I + + SI +D VESLI A+YL G+E A +FV Sbjct: 87 SQRALAAVARRLSLGDYILLGKGESQTRGFDKDSILSDTVESLIGAVYLSHGLEEARSFV 146 Query: 140 DKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + + D KT LQE A + PEY + GPDH FT V I G Sbjct: 147 HRLLDSTLDAAADLGAGLDWKTSLQEAAAERNVGAPEY-TSEGEGPDHARIFTAHVIIDG 205 Query: 198 LAPAQGMDCSKRAAEQVAA 216 G +K+ AEQ+AA Sbjct: 206 EILGTGQGTAKKHAEQIAA 224 >gi|8886722|gb|AAF80558.1|AF189011_1 ribonuclease III [Homo sapiens] Length = 1374 Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1225 IAALYTDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1283 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1284 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331 Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 958 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1012 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 1013 AKKLELDPFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1060 >gi|237755458|ref|ZP_04584082.1| ribonuclease III [Sulfurihydrogenibium yellowstonense SS-5] gi|237692390|gb|EEP61374.1| ribonuclease III [Sulfurihydrogenibium yellowstonense SS-5] Length = 247 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 102/191 (53%), Gaps = 8/191 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 LE+ IGY F ++SLL A+TH S Y + YE LEFLGD ++ L+IS +L F Sbjct: 19 LEEIIGYTFKDKSLLLAAITHRSFVAEYHKKIQDYEVLEFLGDAVISLIISEILIKQFPY 78 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EGELS +++VS S++AR ++ F+ +S + + S+ DV E++ A Sbjct: 79 AREGELSQYRSAIVSEAYLSKLARNVNFQDFVLISKGEKYQKGAERESLLCDVFEAVFGA 138 Query: 126 LYLDG--GIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +Y D +++ +K +K+ ++ RD K+ LQ +G P YK+ Sbjct: 139 IYTDCQYNLDIPREIFNKNFKEIVINDIQQENLPRDYKSLLQIETQRLYGKIPTYKLISS 198 Query: 181 SGPDHDPRFTV 191 GP+HD FTV Sbjct: 199 EGPEHDKTFTV 209 >gi|125624543|ref|YP_001033026.1| ribonuclease III [Lactococcus lactis subsp. cremoris MG1363] gi|189043323|sp|A2RLZ8|RNC_LACLM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|124493351|emb|CAL98325.1| ribonuclease III [Lactococcus lactis subsp. cremoris MG1363] gi|300071337|gb|ADJ60737.1| ribonuclease III [Lactococcus lactis subsp. cremoris NZ9000] Length = 231 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 7/219 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L+ G F + LL+ A THSS ++ + + ERLEFLGD L L+IS L+ + Sbjct: 8 LKNDYGLVFNDEYLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYLYRTYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGELS +S+V E+ + +R F+R+ K + ++ E+ + Sbjct: 68 EKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLFEAFLG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL++D G++ F+ ++ +K+ + + D KTELQE T YK+ G Sbjct: 128 ALFIDQGMDEVRKFI-QHVVIPHVKNDDYVKVIDYKTELQEVLQIGGETTISYKILKEEG 186 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P HD F V +G +G+ SK+ AEQ AA +K Sbjct: 187 PAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225 >gi|314055212|ref|YP_004063550.1| ribonuclease III [Ostreococcus tauri virus 2] gi|313575103|emb|CBI70116.1| ribonuclease III [Ostreococcus tauri virus 2] Length = 230 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 107/214 (50%), Gaps = 10/214 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+ +G N S ++A TH S Y+ ES+E LEF+GD +LG +I+ LF+ ++ Sbjct: 8 IEQLVGTKIKNLSFYQRAFTHKSALKEYEQFNESFETLEFMGDSVLGFIITKFLFDRYEE 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG L+ LV +ET + +A +L L + + + +++ + I DV E+L+ A Sbjct: 68 RQEGFLTKARTKLVRSETLADIALKLGLNNMVLMDEKGQRNQWNNNPKILEDVFEALVGA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +Y+D G+ A FV + + L + + K L + PEY+V Sbjct: 128 IYMDLGLLHAKEFVLRIYNDPRYINLNAIMIDDNFKDHLMRYCQIMNFQLPEYRVV---- 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 H+ F + I+G +G SK+ AEQ+AA Sbjct: 184 GHHEGIFYIDAYINGQFGGRGQAKSKKQAEQLAA 217 >gi|256824933|ref|YP_003148893.1| RNAse III [Kytococcus sedentarius DSM 20547] gi|256688326|gb|ACV06128.1| RNAse III [Kytococcus sedentarius DSM 20547] Length = 228 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/195 (34%), Positives = 98/195 (50%), Gaps = 10/195 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSA 66 LE+ +G + LL +A+TH S S+ ++ ERLEFLGD +LGL+++ L+ Sbjct: 8 LEEVVGVPV-DADLLLQAVTHRSFSYENDDAPHNERLEFLGDSVLGLVVTNHLYRANPDL 66 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ +++VSA A LDL + R+ SI AD VE++I A+ Sbjct: 67 PEGELAKLRSAVVSARALGGEAGRLDLGDYFRLGRGEENSGGRAKNSILADGVEAVIGAV 126 Query: 127 YLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 YL G++ A T V D+ +Q D KT LQE A+ PEY++T SG Sbjct: 127 YLSSGLDAATTVVHHLLDELMEQSQTMGAAL--DWKTSLQELGSARGLGLPEYRIT-DSG 183 Query: 183 PDHDPRFTVVVEISG 197 PDH F + G Sbjct: 184 PDHAKLFEATAVLGG 198 >gi|116511619|ref|YP_808835.1| ribonuclease III [Lactococcus lactis subsp. cremoris SK11] gi|122940253|sp|Q030F9|RNC_LACLS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116107273|gb|ABJ72413.1| RNAse III [Lactococcus lactis subsp. cremoris SK11] Length = 231 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/219 (30%), Positives = 106/219 (48%), Gaps = 7/219 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L+ G F + LL+ A THSS ++ + + ERLEFLGD L L+IS L+ + Sbjct: 8 LKNDYGLVFNDEDLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYLYRTYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGELS +S+V E+ + +R F+R+ K + ++ E+ + Sbjct: 68 EKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLFEAFLG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL++D G++ F+ ++ +K+ + + D KTELQE T Y + G Sbjct: 128 ALFIDQGMDEVRKFI-QHVVIPHVKNDDYVKVIDYKTELQEVLQVGGETTITYNILKEEG 186 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P HD F V +G +G+ SK+ AEQ AA +K Sbjct: 187 PAHDRSFVAAVYNNGKELGRGLGKSKKVAEQKAAENAIK 225 >gi|159036823|ref|YP_001536076.1| ribonuclease III [Salinispora arenicola CNS-205] gi|157915658|gb|ABV97085.1| Ribonuclease III [Salinispora arenicola CNS-205] Length = 252 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/196 (34%), Positives = 105/196 (53%), Gaps = 9/196 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE G A + LLE+ALTH S ++ + ERLEFLGD +LG++I+T LF++ Sbjct: 14 LEAAFGVAL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDL 72 Query: 67 KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ S+V+ ++VAR L L ++ + SI AD +E+L+ Sbjct: 73 PEGQLAKLRASVVNMRALAEVARALGPTGLGPYLLLGKGEETTGGRDKASILADTLEALL 132 Query: 124 AALYLDGGIEVAGTFVDKYWKQ-RALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YL G++ A T + + + A +G+ D KT LQE A+ PEY++ + Sbjct: 133 GAIYLQCGLDTAATVIHRLFDPLMADSAGRGAALDWKTSLQELTAAQGLGVPEYRIEG-T 191 Query: 182 GPDHDPRFTVVVEISG 197 GPDH FT V ++G Sbjct: 192 GPDHLKTFTAWVVVAG 207 >gi|148377702|ref|YP_001256578.1| ribonuclease III (RNase III) [Mycoplasma agalactiae PG2] gi|148291748|emb|CAL59137.1| Ribonuclease III (RNase III) [Mycoplasma agalactiae PG2] Length = 226 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 107/202 (52%), Gaps = 8/202 (3%) Query: 25 KALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +A TH SS+++S ++Y+ LEFLGD IL +S +LFN F +G+L++ + LV ++ Sbjct: 23 QAFTHGSSVANSKGKNYQTLEFLGDAILQFYVSAILFNSFKDKNQGQLTLIRSKLVCTDS 82 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 +Q+A L L F+ +SS++ + AD+ ESL+AA++LD G+ F+DK Sbjct: 83 LNQIADLLKLKDFLVLSSNVVATEVLSSKKVGADIFESLVAAIFLDQGLPKVKDFLDKTL 142 Query: 144 KQ--RALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + K GK +D+KT LQE + F + T++S + F G Sbjct: 143 LPLVKQYKEGKIELKDSKTRLQEHMQS-FSKKTVFYQTYQS---ENNLFKAEAIYEGNVY 198 Query: 201 AQGMDCSKRAAEQVAAAEVLKR 222 G+ SK AE+ AA + L + Sbjct: 199 GSGVGKSKHEAEENAANDALNK 220 >gi|94469421|gb|ABF20199.1| ribonuclease III [Ehrlichia ruminantium] gi|94469427|gb|ABF20203.1| ribonuclease III [Ehrlichia ruminantium] Length = 145 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 78/137 (56%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 ++A+ ++L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK Sbjct: 3 EIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKN 62 Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 A +DAKT LQEWA +K P Y + +SGPDH+P FTV V I+ Sbjct: 63 SATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATG 122 Query: 206 CSKRAAEQVAAAEVLKR 222 +K+ AEQ AA+ +L + Sbjct: 123 HNKKLAEQKAASLMLAK 139 >gi|189345713|ref|YP_001942242.1| Ribonuclease III [Chlorobium limicola DSM 245] gi|189339860|gb|ACD89263.1| Ribonuclease III [Chlorobium limicola DSM 245] Length = 273 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 18/220 (8%) Query: 14 GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 G A +L ALTH S++H ES +RLEFLGD +L ++IS L+ F ++ EG Sbjct: 47 GSAGNEPALYLTALTHRSVTHDASVPGTESNQRLEFLGDAVLDMVISEYLYRSFPNSAEG 106 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRV--SSDLRKDVCSFMTSIQADVVESLIAALY 127 +LS +V+ ++ + A+ + L +++ + S+D K S S AD ESL A+Y Sbjct: 107 DLSSNRAKIVNRKSLAGFAQTMGLGNYLIIGESADCNKIRTS--ESALADAFESLTGAIY 164 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKFGVTPEYKVTFRS 181 LD G++ FV K + ++ F+ + K+ L E+ + P Y V + Sbjct: 165 LDKGLDAVRAFVMK----QVIEHVDFKTIVASEHNYKSRLIEYTQSHHIPPPVYTVIAQD 220 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 G +H+ FT+ V +G + +G K+ AEQ+AA E ++ Sbjct: 221 GAEHEKVFTIEVSCAGCSCGRGSAPRKKDAEQLAAKEAVE 260 >gi|312897519|ref|ZP_07756939.1| ribonuclease III [Megasphaera micronuciformis F0359] gi|310621371|gb|EFQ04911.1| ribonuclease III [Megasphaera micronuciformis F0359] Length = 238 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 110/227 (48%), Gaps = 11/227 (4%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLL 59 LR T IG F + LL++ALTHSS ++ + + ERLEFLGD +L +++ L Sbjct: 9 LRNFTKRLNIG-PFTDWHLLDQALTHSSYTNEDKTHHSMHNERLEFLGDAVLDMVVGEYL 67 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EG L+ S+VS E + V + ++R+ SI AD Sbjct: 68 YRRYPDMPEGNLTKARASIVSEEPLACVCAGFHMGDYLRLGKGEALTGGRTRNSIMADAF 127 Query: 120 ESLIAALYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 E+++ A+Y+D A F+ ++Y + ++ G + +D KT QE +Y Sbjct: 128 EAVVGAIYMDCSYSAARDFILTQLERYLQ--LVEKGIYGKDYKTYFQELLQRDGAQDIKY 185 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + GPDH+ F + V ++G G +K++AEQ AA L++ Sbjct: 186 HLCHEEGPDHNKTFFMEVIVNGTTMGMGSGKTKKSAEQHAAYAALEK 232 >gi|303231076|ref|ZP_07317816.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6] gi|302514207|gb|EFL56209.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6] Length = 247 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 104/209 (49%), Gaps = 8/209 (3%) Query: 21 SLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 S+L+ A TH+S ++ ++ + +RLEFLGD +L L+I LF + EG L+ Sbjct: 35 SILDCAFTHTSYANEHKSKHIHHNQRLEFLGDAVLDLIIGEYLFTTYPDMSEGNLTKIKA 94 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + V ++ + V+R L L ++ + + S SI AD ESLI ALY+ + Sbjct: 95 ATVCEDSLATVSRTLHLGDYLLLGHGEKSSGGSDRKSILADTFESLIGALYITTDYKTVM 154 Query: 137 TFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 FV ++AL+ GK +D KT LQE+ Y + SGPDH F + V Sbjct: 155 DFVLHQLAPNLKQALE-GKRGKDYKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEV 213 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 I G+ G SK+ AEQ AA L+R Sbjct: 214 SIDGITYEAGTGKSKKIAEQHAAQLTLER 242 >gi|74318104|ref|YP_315844.1| ribonuclease III [Thiobacillus denitrificans ATCC 25259] gi|90101653|sp|Q3SH50|RNC_THIDA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|74057599|gb|AAZ98039.1| ribonuclease III [Thiobacillus denitrificans ATCC 25259] Length = 226 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 98/195 (50%), Gaps = 11/195 (5%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 +AL + L++ +GY F+ LL++ALTH S + ERLEFLGD +L ++ L++ Sbjct: 3 NALLDARLQQALGYTFSRSGLLQQALTHRSYGAL---NNERLEFLGDSVLNCSVARALYD 59 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG LS +LV ET +++A L L +R+ K SI AD +ES Sbjct: 60 AFPDLPEGSLSRLRANLVRQETLAEIAGALRLGDSLRLGEGELKSGGFRRPSILADALES 119 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK-----SGKFRRDAKTELQEWAHAKFGVTPEYK 176 L A++LD G + A V + + + SGK D KT LQE ++ PEY+ Sbjct: 120 LFGAVFLDAGFDEAQRVVRRLFDPLVAQIDPKASGK---DPKTRLQEILQSRRLPLPEYR 176 Query: 177 VTFRSGPDHDPRFTV 191 + G HD F V Sbjct: 177 LVGTEGEAHDQSFIV 191 >gi|313844119|ref|YP_004061782.1| hypothetical protein OlV1_149c [Ostreococcus lucimarinus virus OlV1] gi|312599504|gb|ADQ91526.1| hypothetical protein OlV1_149c [Ostreococcus lucimarinus virus OlV1] Length = 230 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 10/214 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 +EK +G N SL +A TH S Y+ ES+E LEF+GD +LG +I+ LF+ ++ Sbjct: 8 IEKLVGTKIKNLSLYHRAFTHKSALKEYEQFNESFETLEFMGDSVLGFIITKFLFDRYEE 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG L+ LV +ET + +A ++ L + + + ++ + I DV E+L+ A Sbjct: 68 RQEGFLTKARTKLVRSETLADIALKMGLNNMVLMDEKGMRNNWNNNPKILEDVFEALVGA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +Y+D G+ A FV + + L + K L ++ PEY+V Sbjct: 128 IYMDLGLLHAKEFVLRIYNDPNFIDLNKIMIDDNFKDHLMKYCQIMNIPLPEYRVV---- 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 H+ F + I+G +G SK+ AEQ+AA Sbjct: 184 GHHEGIFYIDTYINGQFGGRGEAKSKKQAEQLAA 217 >gi|172040468|ref|YP_001800182.1| ribonuclease III [Corynebacterium urealyticum DSM 7109] gi|171851772|emb|CAQ04748.1| ribonuclease III [Corynebacterium urealyticum DSM 7109] Length = 245 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 99/199 (49%), Gaps = 5/199 (2%) Query: 22 LLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +L ALTH S +H + ERLEFLGD +LGL ++ L+ F E ++S +V Sbjct: 37 MLRLALTHRSFAHENDNVPNNERLEFLGDAVLGLSVAEQLYTQFPQRSESDISKMRAGVV 96 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 + + +AR L L +I + K SI AD VE+++ A+YL+ G VA V Sbjct: 97 NMYALAGLARNLGLGEYILLGRGEMKTDGQDKDSILADTVEAILGAIYLEHGFAVAKATV 156 Query: 140 DKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + +K K+ D KT +QE PEY+VT SGP+HD F +++ G Sbjct: 157 LRLFKSMIDKAPTVGLTMDWKTTVQERLREHDLPMPEYEVT-SSGPEHDKAFFATLKLDG 215 Query: 198 LAPAQGMDCSKRAAEQVAA 216 +G +K+ AE AA Sbjct: 216 KERTRGQGRTKKEAEHQAA 234 >gi|15924223|ref|NP_371757.1| ribonuclease III [Staphylococcus aureus subsp. aureus Mu50] gi|156979554|ref|YP_001441813.1| ribonuclease III [Staphylococcus aureus subsp. aureus Mu3] gi|255006020|ref|ZP_05144621.2| ribonuclease III [Staphylococcus aureus subsp. aureus Mu50-omega] gi|22654068|sp|Q931T1|RNC_STAAM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043357|sp|A7X1J9|RNC_STAA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|14247003|dbj|BAB57395.1| RNase III [Staphylococcus aureus subsp. aureus Mu50] gi|156721689|dbj|BAF78106.1| RNase III [Staphylococcus aureus subsp. aureus Mu3] Length = 243 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 11/226 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 R+ T +G+ + N L ++A +HSS + + + ERLEFLGD +L L +S LF Sbjct: 16 RFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG L+ ++V + A ++ L I + K S+ +D E Sbjct: 76 DKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + I ALYLD G+++ F +K + +Q L D KT+ QE+ H + Y Sbjct: 136 AFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLG---VVDFKTQFQEYVHQQNKGDVTYN 192 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + GP H FT V + G A A+G +K+ +EQ AA K+ Sbjct: 193 LIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAKSAYKQ 238 >gi|15926816|ref|NP_374349.1| ribonuclease III [Staphylococcus aureus subsp. aureus N315] gi|21282845|ref|NP_645933.1| ribonuclease III [Staphylococcus aureus subsp. aureus MW2] gi|49483396|ref|YP_040620.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA252] gi|49486072|ref|YP_043293.1| ribonuclease III [Staphylococcus aureus subsp. aureus MSSA476] gi|57651802|ref|YP_186108.1| ribonuclease III [Staphylococcus aureus subsp. aureus COL] gi|87160069|ref|YP_493823.1| ribonuclease III [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194940|ref|YP_499740.1| ribonuclease III [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267724|ref|YP_001246667.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH9] gi|150393782|ref|YP_001316457.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH1] gi|151221355|ref|YP_001332177.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newman] gi|161509405|ref|YP_001575064.1| ribonuclease III [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142023|ref|ZP_03566516.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315591|ref|ZP_04838804.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731850|ref|ZP_04866015.1| RNase III [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733529|ref|ZP_04867694.1| RNase III [Staphylococcus aureus subsp. aureus TCH130] gi|257425287|ref|ZP_05601712.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053] gi|257427947|ref|ZP_05604345.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322] gi|257430580|ref|ZP_05606962.1| ribonuclease III [Staphylococcus aureus subsp. aureus 68-397] gi|257433341|ref|ZP_05609699.1| ribonuclease III [Staphylococcus aureus subsp. aureus E1410] gi|257436183|ref|ZP_05612230.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876] gi|257795711|ref|ZP_05644690.1| ribonuclease III [Staphylococcus aureus A9781] gi|258415935|ref|ZP_05682205.1| ribonuclease III [Staphylococcus aureus A9763] gi|258419682|ref|ZP_05682649.1| ribonuclease III [Staphylococcus aureus A9719] gi|258423926|ref|ZP_05686811.1| ribonuclease III [Staphylococcus aureus A9635] gi|258434853|ref|ZP_05688927.1| ribonuclease III [Staphylococcus aureus A9299] gi|258444571|ref|ZP_05692900.1| ribonuclease III [Staphylococcus aureus A8115] gi|258447596|ref|ZP_05695740.1| ribonuclease III [Staphylococcus aureus A6300] gi|258449438|ref|ZP_05697541.1| ribonuclease III [Staphylococcus aureus A6224] gi|258454817|ref|ZP_05702781.1| ribonuclease III [Staphylococcus aureus A5937] gi|262048131|ref|ZP_06021018.1| RNase III [Staphylococcus aureus D30] gi|262051862|ref|ZP_06024078.1| RNase III [Staphylococcus aureus 930918-3] gi|269202849|ref|YP_003282118.1| ribonuclease III [Staphylococcus aureus subsp. aureus ED98] gi|282892720|ref|ZP_06300955.1| ribonuclease III [Staphylococcus aureus A8117] gi|282903787|ref|ZP_06311675.1| ribonuclease III [Staphylococcus aureus subsp. aureus C160] gi|282905551|ref|ZP_06313406.1| ribonuclease III [Staphylococcus aureus subsp. aureus Btn1260] gi|282908526|ref|ZP_06316356.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910805|ref|ZP_06318608.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049] gi|282914009|ref|ZP_06321796.1| ribonuclease III [Staphylococcus aureus subsp. aureus M899] gi|282916483|ref|ZP_06324245.1| ribonuclease III [Staphylococcus aureus subsp. aureus D139] gi|282918931|ref|ZP_06326666.1| ribonuclease III [Staphylococcus aureus subsp. aureus C427] gi|282920016|ref|ZP_06327745.1| ribonuclease III [Staphylococcus aureus A9765] gi|282924054|ref|ZP_06331730.1| ribonuclease III [Staphylococcus aureus subsp. aureus C101] gi|282927574|ref|ZP_06335190.1| ribonuclease III [Staphylococcus aureus A10102] gi|283770295|ref|ZP_06343187.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus H19] gi|283957975|ref|ZP_06375426.1| ribonuclease III [Staphylococcus aureus subsp. aureus A017934/97] gi|284024157|ref|ZP_06378555.1| ribonuclease III [Staphylococcus aureus subsp. aureus 132] gi|293501041|ref|ZP_06666892.1| ribonuclease III [Staphylococcus aureus subsp. aureus 58-424] gi|293510001|ref|ZP_06668709.1| ribonuclease III [Staphylococcus aureus subsp. aureus M809] gi|293526589|ref|ZP_06671274.1| ribonuclease III [Staphylococcus aureus subsp. aureus M1015] gi|294848227|ref|ZP_06788974.1| ribonuclease III [Staphylococcus aureus A9754] gi|295407172|ref|ZP_06816973.1| ribonuclease III [Staphylococcus aureus A8819] gi|295427719|ref|ZP_06820351.1| ribonuclease III [Staphylococcus aureus subsp. aureus EMRSA16] gi|296274790|ref|ZP_06857297.1| ribonuclease III [Staphylococcus aureus subsp. aureus MR1] gi|297208123|ref|ZP_06924554.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245941|ref|ZP_06929800.1| ribonuclease III [Staphylococcus aureus A8796] gi|297591322|ref|ZP_06949960.1| ribonuclease III [Staphylococcus aureus subsp. aureus MN8] gi|300912203|ref|ZP_07129646.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH70] gi|304381203|ref|ZP_07363856.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54039243|sp|P66669|RNC_STAAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54041615|sp|P66668|RNC_STAAN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56749389|sp|Q6G9Y0|RNC_STAAS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56749418|sp|Q6GHK2|RNC_STAAR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|73917582|sp|Q5HGJ9|RNC_STAAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122539710|sp|Q2FZ50|RNC_STAA8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|123486215|sp|Q2FHK5|RNC_STAA3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043358|sp|A6U152|RNC_STAA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043359|sp|A5ISB8|RNC_STAA9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043360|sp|A6QGD3|RNC_STAAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043361|sp|A8Z3R9|RNC_STAAT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|13701033|dbj|BAB42328.1| RNase III [Staphylococcus aureus subsp. aureus N315] gi|21204284|dbj|BAB94981.1| RNase III [Staphylococcus aureus subsp. aureus MW2] gi|49241525|emb|CAG40211.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus MRSA252] gi|49244515|emb|CAG42944.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus MSSA476] gi|57285988|gb|AAW38082.1| ribonuclease III [Staphylococcus aureus subsp. aureus COL] gi|87126043|gb|ABD20557.1| ribonuclease III [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202498|gb|ABD30308.1| ribonuclease III, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740793|gb|ABQ49091.1| RNAse III [Staphylococcus aureus subsp. aureus JH9] gi|149946234|gb|ABR52170.1| Ribonuclease III [Staphylococcus aureus subsp. aureus JH1] gi|150374155|dbj|BAF67415.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newman] gi|160368214|gb|ABX29185.1| ribonuclease III [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724449|gb|EES93178.1| RNase III [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728583|gb|EES97312.1| RNase III [Staphylococcus aureus subsp. aureus TCH130] gi|257271744|gb|EEV03882.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053] gi|257274788|gb|EEV06275.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322] gi|257278708|gb|EEV09327.1| ribonuclease III [Staphylococcus aureus subsp. aureus 68-397] gi|257281434|gb|EEV11571.1| ribonuclease III [Staphylococcus aureus subsp. aureus E1410] gi|257284465|gb|EEV14585.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876] gi|257789683|gb|EEV28023.1| ribonuclease III [Staphylococcus aureus A9781] gi|257839271|gb|EEV63745.1| ribonuclease III [Staphylococcus aureus A9763] gi|257844267|gb|EEV68649.1| ribonuclease III [Staphylococcus aureus A9719] gi|257845955|gb|EEV69984.1| ribonuclease III [Staphylococcus aureus A9635] gi|257849214|gb|EEV73196.1| ribonuclease III [Staphylococcus aureus A9299] gi|257850064|gb|EEV74017.1| ribonuclease III [Staphylococcus aureus A8115] gi|257853787|gb|EEV76746.1| ribonuclease III [Staphylococcus aureus A6300] gi|257857426|gb|EEV80324.1| ribonuclease III [Staphylococcus aureus A6224] gi|257863200|gb|EEV85964.1| ribonuclease III [Staphylococcus aureus A5937] gi|259160263|gb|EEW45291.1| RNase III [Staphylococcus aureus 930918-3] gi|259163697|gb|EEW48252.1| RNase III [Staphylococcus aureus D30] gi|262075139|gb|ACY11112.1| ribonuclease III [Staphylococcus aureus subsp. aureus ED98] gi|269940725|emb|CBI49106.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus TW20] gi|282314026|gb|EFB44418.1| ribonuclease III [Staphylococcus aureus subsp. aureus C101] gi|282316741|gb|EFB47115.1| ribonuclease III [Staphylococcus aureus subsp. aureus C427] gi|282319923|gb|EFB50271.1| ribonuclease III [Staphylococcus aureus subsp. aureus D139] gi|282322077|gb|EFB52401.1| ribonuclease III [Staphylococcus aureus subsp. aureus M899] gi|282325410|gb|EFB55719.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049] gi|282327588|gb|EFB57871.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330843|gb|EFB60357.1| ribonuclease III [Staphylococcus aureus subsp. aureus Btn1260] gi|282590577|gb|EFB95654.1| ribonuclease III [Staphylococcus aureus A10102] gi|282594732|gb|EFB99716.1| ribonuclease III [Staphylococcus aureus A9765] gi|282595405|gb|EFC00369.1| ribonuclease III [Staphylococcus aureus subsp. aureus C160] gi|282764717|gb|EFC04842.1| ribonuclease III [Staphylococcus aureus A8117] gi|283460442|gb|EFC07532.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus H19] gi|283470446|emb|CAQ49657.1| ribonuclease III [Staphylococcus aureus subsp. aureus ST398] gi|283790124|gb|EFC28941.1| ribonuclease III [Staphylococcus aureus subsp. aureus A017934/97] gi|285816915|gb|ADC37402.1| Ribonuclease III [Staphylococcus aureus 04-02981] gi|290920661|gb|EFD97724.1| ribonuclease III [Staphylococcus aureus subsp. aureus M1015] gi|291096046|gb|EFE26307.1| ribonuclease III [Staphylococcus aureus subsp. aureus 58-424] gi|291466945|gb|EFF09463.1| ribonuclease III [Staphylococcus aureus subsp. aureus M809] gi|294825027|gb|EFG41449.1| ribonuclease III [Staphylococcus aureus A9754] gi|294968025|gb|EFG44053.1| ribonuclease III [Staphylococcus aureus A8819] gi|295128077|gb|EFG57711.1| ribonuclease III [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887366|gb|EFH26268.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177105|gb|EFH36359.1| ribonuclease III [Staphylococcus aureus A8796] gi|297576208|gb|EFH94924.1| ribonuclease III [Staphylococcus aureus subsp. aureus MN8] gi|298694526|gb|ADI97748.1| Ribonuclease III [Staphylococcus aureus subsp. aureus ED133] gi|300886449|gb|EFK81651.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH70] gi|302332837|gb|ADL23030.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus JKD6159] gi|302751056|gb|ADL65233.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340186|gb|EFM06127.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438389|gb|ADQ77460.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH60] gi|312829627|emb|CBX34469.1| ribonuclease III [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131026|gb|EFT87010.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS03] gi|315194121|gb|EFU24514.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS00] gi|315198472|gb|EFU28801.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS01] gi|320140951|gb|EFW32798.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA131] gi|320144334|gb|EFW36100.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA177] gi|323441008|gb|EGA98715.1| ribonuclease III [Staphylococcus aureus O11] gi|323442325|gb|EGA99955.1| ribonuclease III [Staphylococcus aureus O46] gi|329313902|gb|AEB88315.1| Ribonuclease 3 [Staphylococcus aureus subsp. aureus T0131] gi|329724757|gb|EGG61262.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21189] gi|329727692|gb|EGG64148.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21172] gi|329733624|gb|EGG69952.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21193] Length = 243 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 11/226 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 R+ T +G+ + N L ++A +HSS + + + ERLEFLGD +L L +S LF Sbjct: 16 RFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG L+ ++V + A ++ L I + K S+ +D E Sbjct: 76 DKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + I ALYLD G+++ F +K + +Q L D KT+ QE+ H + Y Sbjct: 136 AFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLG---VVDFKTQFQEYVHQQNKGDVTYN 192 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + GP H FT V + G A A+G +K+ +EQ AA K+ Sbjct: 193 LIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQ 238 >gi|227495870|ref|ZP_03926181.1| ribonuclease III [Actinomyces urogenitalis DSM 15434] gi|226834547|gb|EEH66930.1| ribonuclease III [Actinomyces urogenitalis DSM 15434] Length = 276 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 71/201 (35%), Positives = 98/201 (48%), Gaps = 9/201 (4%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALTH S +H + ERLEFLGD +L ++++ LF EG+L+ + V Sbjct: 35 LLDLALTHRSWAHENGGLPTNERLEFLGDAVLQIIVTEDLFRDHPEVPEGQLAKMRAATV 94 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI----EVA 135 S + VAR+L L FI++ SI +D VE+LI A YL G+ EV Sbjct: 95 SEPALAGVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTVGLEPVREVV 154 Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 V ++ + + D KT LQE A +P Y+VT GPDH FT V + Sbjct: 155 LRLVSRFLTEAPSRGAGL--DWKTSLQELAAVHRLGSPSYRVT-SVGPDHARVFTAVAVV 211 Query: 196 SGLAPAQGMDCSKRAAEQVAA 216 G +G SK+ AE AA Sbjct: 212 DGQERGEGTGSSKKVAEHDAA 232 >gi|89898471|ref|YP_515581.1| ribonuclease III [Chlamydophila felis Fe/C-56] gi|123483118|sp|Q253V2|RNC_CHLFF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|89331843|dbj|BAE81436.1| ribonuclease III [Chlamydophila felis Fe/C-56] Length = 237 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 101/215 (46%), Gaps = 3/215 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E ++ + F LL ALTH S + + E ERLEFLGD +L L+++ LF F S Sbjct: 10 VEAKLKFTFTQPQLLVTALTHPSYRNETVTITEDSERLEFLGDAVLCLIVTEHLFLLFPS 69 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG LS +L++A +C Q L L ++ + R TS A++ E+++ A Sbjct: 70 MDEGTLSTARAALINAVSCCQYTDALGLGEYLLIGKGERIQNERGRTSAYANLFEAILGA 129 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +YLDGG+ A + + K LQ+ + P Y+ T P Sbjct: 130 VYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKQLRTLPVYQSTPWISPQG 189 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P + + V ++ +G SK+ AE++AA E L Sbjct: 190 APGYHIRVIVNDEIWGEGFALSKKEAEKLAAQEAL 224 >gi|258452531|ref|ZP_05700537.1| ribonuclease III [Staphylococcus aureus A5948] gi|257859749|gb|EEV82591.1| ribonuclease III [Staphylococcus aureus A5948] Length = 243 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 11/226 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 R+ T +G+ + N L ++A +HSS + + + ERLEFLGD +L L +S LF Sbjct: 16 RFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG L+ ++V + A ++ L I + K S+ +D E Sbjct: 76 DKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + I ALYLD G+++ F +K + +Q L D KT+ QE+ H + Y Sbjct: 136 AFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLG---VVDFKTQFQEYVHQQNKGDVTYN 192 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + GP H FT V + G A A+G +K+ +EQ AA K+ Sbjct: 193 LIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQ 238 >gi|218440872|ref|YP_002379201.1| ribonuclease III [Cyanothece sp. PCC 7424] gi|218173600|gb|ACK72333.1| Ribonuclease III [Cyanothece sp. PCC 7424] Length = 228 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 12/220 (5%) Query: 19 NRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 N+ L ALTH S + + +E ERLEFLGD +L + L+ + E +LS Sbjct: 9 NQQLWLCALTHRSYVNEHLEIKEHNERLEFLGDAVLAFVAGEFLYQRYPHLSEAQLSRLR 68 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 LV ++ A +L + +R+ KD ++ +D E++I A +LD GI+ Sbjct: 69 ARLVDETQLAKFAVQLGIGQLMRLGKGAIKDGGRENPALLSDTFEAIIGAYFLDAGIDAV 128 Query: 136 GTFVDKYWK---------QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 FV ++ Q + + + D K Q+W A F PEY + SGPDH Sbjct: 129 REFVRPLFQSVADILMVAQSEILTSEKLLDPKNRFQQWTLANFTQNPEYVIIEESGPDHA 188 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 FT V++ G+ G K+ A + AA LK+ G++ Sbjct: 189 KEFTAQVKVQGIVYGIGRGRRKQEATKTAAEAALKKIGLF 228 >gi|170709347|ref|ZP_02899762.1| ribonuclease III [Bacillus anthracis str. A0389] gi|170125742|gb|EDS94654.1| ribonuclease III [Bacillus anthracis str. A0389] Length = 245 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 110/223 (49%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I A YLD G+E F+ + + + G F D K++LQE EY++ Sbjct: 139 FIGAFYLDQGLETVWGFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++ +A G SK+ AEQ AAAE LK+ Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240 >gi|94469418|gb|ABF20197.1| ribonuclease III [Ehrlichia ruminantium] Length = 145 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 79/137 (57%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 ++A+ ++L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK Sbjct: 3 EIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKN 62 Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 A +DAKT LQEWA +K P Y + +SGPDH+P FTV V I+ + Sbjct: 63 SATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLRATG 122 Query: 206 CSKRAAEQVAAAEVLKR 222 +K+ AEQ AA+ +L + Sbjct: 123 HNKKLAEQKAASLMLAK 139 >gi|165973380|ref|NP_001107152.1| drosha, ribonuclease type III [Xenopus (Silurana) tropicalis] gi|163916533|gb|AAI57521.1| rnasen protein [Xenopus (Silurana) tropicalis] Length = 1325 Score = 92.4 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 112/228 (49%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL + T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1061 KLTKFEEAIGVEFTHVRLLARVFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1120 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + F +++D K T AD++ES Sbjct: 1121 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVVLRTKTLADLLESF 1179 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 1180 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1238 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 1239 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1286 Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F +EG L+ ++V + + + Sbjct: 913 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPLLEEGGLATYRTAIVQNQHLAML 967 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+L+ A+YL+GG+E A Sbjct: 968 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALMGAVYLEGGLEEA 1015 >gi|152976215|ref|YP_001375732.1| ribonuclease III [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189043291|sp|A7GRH9|RNC_BACCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|152024967|gb|ABS22737.1| Ribonuclease III [Bacillus cytotoxicus NVH 391-98] Length = 245 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 111/223 (49%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++++G F N LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FRAFQQKLGITFTNEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G++ F+ + + + G F D K++LQE EY++ Sbjct: 139 FIGALYLDQGLDTVWGFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++ +A G SK+ AEQ AAAE L++ Sbjct: 198 EKGPAHNREFVSRVTLNSVALGLGSGKSKKEAEQQAAAEALRK 240 >gi|293446921|ref|ZP_06663343.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B088] gi|291323751|gb|EFE63179.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B088] Length = 182 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 95/181 (52%), Gaps = 3/181 (1%) Query: 45 FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 FLGD IL +I+ L++ F EG++S +LV T +++ARE +L +R+ Sbjct: 1 FLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGEL 60 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQ 162 K SI AD VE+LI ++LD I+ + +++ R + G ++D KT LQ Sbjct: 61 KSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQ 120 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 E+ + P Y V G HD FT+ ++SGL+ P G S+R AEQ AA + LK Sbjct: 121 EYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALK 180 Query: 222 R 222 + Sbjct: 181 K 181 >gi|312879974|ref|ZP_07739774.1| ribonuclease III [Aminomonas paucivorans DSM 12260] gi|310783265|gb|EFQ23663.1| ribonuclease III [Aminomonas paucivorans DSM 12260] Length = 232 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 106/215 (49%), Gaps = 7/215 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L + + Y F + LL +ALTH+S ++ ERLEFLGD +L L +S L+ A Sbjct: 11 LGRALRYRFHRQELLTEALTHASFANESGLSRCNERLEFLGDAVLELCVSERLYRERPDA 70 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+L+ ++LV A ++ R + + + + R+ ++ AD E+++ A+ Sbjct: 71 EEGDLTRWRSALVCAPNLARWGRLWGIPACLLLGKGFRRG--GPNENMVADAFEAVLGAI 128 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG++ + L+ GK D K+ LQE + P Y++ +SGP H+ Sbjct: 129 YLDGGLDAVREVLHPLPLPEVLEEGK---DPKSRLQEVLQGQGHPCPRYELREQSGPPHE 185 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V V A G S R AE+ AA L+ Sbjct: 186 RWFVVEVSCGEQVLASGEGRSLREAERCAANRALE 220 >gi|240016009|ref|ZP_04722549.1| ribonuclease III [Neisseria gonorrhoeae FA6140] gi|240115103|ref|ZP_04729165.1| ribonuclease III [Neisseria gonorrhoeae PID18] Length = 239 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + +R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFAER-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 186 Query: 183 PDHDPRFTVVVEISGLA 199 +D F + ++ L Sbjct: 187 HANDSMFVISCDLGELG 203 >gi|323359692|ref|YP_004226088.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037] gi|323276063|dbj|BAJ76208.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037] Length = 230 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 107/218 (49%), Gaps = 15/218 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 S L +++G + LL ALTH S ++ ERLEFLGD +LG ++ LF Sbjct: 9 SALTEKLGVDI-DPELLSLALTHRSFAYENGGIPHNERLEFLGDSVLGQAVTVRLFTRHP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVES 121 EG+L+ R +VS ++VAR + L +R+ R ++ + SI AD +E+ Sbjct: 68 DLDEGQLAKRRAGVVSTIALAEVARGIGLGQHVRLG---RGEILTGGHDKDSILADTMEA 124 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVT-PEYKVT 178 +I A YL G + A V + + ++ D KT LQE A A+ V P Y V Sbjct: 125 IIGATYLSAGPDAATAMVLRLVEPLMADPARYGAAMDPKTSLQEIA-ARLSVPAPTYSVE 183 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +GPDHD RFT V + + G SK+ AE AA Sbjct: 184 A-AGPDHDRRFTATVRVGDVV-TTGTGSSKKQAEMAAA 219 >gi|259503531|ref|ZP_05746433.1| ribonuclease III [Lactobacillus antri DSM 16041] gi|259168609|gb|EEW53104.1| ribonuclease III [Lactobacillus antri DSM 16041] Length = 232 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 7/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64 L K F++ LL +A T +S + + YER+EFLGD +L L++S ++ + Sbjct: 9 LAKEFDIHFSDPRLLAEAFTQASYVNEHPNQNLKFYERIEFLGDAVLELIVSEYIYKRYP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G L+ ++V ++ S+ A+E +IR+ + D+ ES + Sbjct: 69 ELPQGRLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEELAGARQRPGLLCDIFESFVG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G FV + + L G F DAKT LQE+ V EY + SG Sbjct: 129 ALYLDQGRPAVEKFVQRVIFPK-LDMGWFDHAVDAKTSLQEFLQRDGDVLIEYHLLEESG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +++P F V V G A G SK+ AE AA LK+ Sbjct: 188 TENNPAFHVDVAADGQVIADGQGSSKKQAEMQAAQRALKK 227 >gi|325129784|gb|EGC52592.1| ribonuclease III [Neisseria meningitidis OX99.30304] gi|325133799|gb|EGC56455.1| ribonuclease III [Neisseria meningitidis M13399] gi|325135722|gb|EGC58334.1| ribonuclease III [Neisseria meningitidis M0579] gi|325141941|gb|EGC64381.1| ribonuclease III [Neisseria meningitidis 961-5945] gi|325143926|gb|EGC66236.1| ribonuclease III [Neisseria meningitidis M01-240013] gi|325197906|gb|ADY93362.1| ribonuclease III [Neisseria meningitidis G2136] gi|325202518|gb|ADY97972.1| ribonuclease III [Neisseria meningitidis M01-240149] gi|325206470|gb|ADZ01923.1| ribonuclease III [Neisseria meningitidis M04-240196] gi|325207732|gb|ADZ03184.1| ribonuclease III [Neisseria meningitidis NZ-05/33] Length = 239 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++KR+GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HAAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFADR-VRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 186 Query: 183 PDHDPRFTVVVEISGLA 199 +D F V ++ L Sbjct: 187 HANDSMFVVSCDLGELG 203 >gi|304404216|ref|ZP_07385878.1| ribonuclease III [Paenibacillus curdlanolyticus YK9] gi|304347194|gb|EFM13026.1| ribonuclease III [Paenibacillus curdlanolyticus YK9] Length = 232 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 8/222 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L++R+ F LL +A TH+S + ++ E ERLEFLGD +L LL+S LF + Sbjct: 9 LQQRLLIRFRQPRLLRQAFTHTSYVNEHRGKPIEDNERLEFLGDAVLQLLVSEHLFLTYP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGEL+ S+V + ++ A L L + + + + ++ AD+ E+ + Sbjct: 69 NRPEGELTRMRASIVCEPSLARFADLLGLGACVLLGRGEEQLGGRHRPALLADLFEAFVG 128 Query: 125 ALYLDGGIEVAGTFV-DKYWKQRALKSGKFRRDAKTELQEWA-HAKFGVTPEYKVTFRSG 182 A+YLD G++ F+ ++ + Q +D K++LQE A H G T EY++ G Sbjct: 129 AVYLDQGLDRVRLFLTERIFPQIEENGSLLVKDFKSKLQEKAQHGTLG-TVEYRIAEERG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA-AEVLKRE 223 P HD F V V I G+ +K+ AEQ +A A LK E Sbjct: 188 PAHDREFVVEVRIGDQPYGIGVGRTKKEAEQRSAEAACLKLE 229 >gi|227488592|ref|ZP_03918908.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51867] gi|227091486|gb|EEI26798.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51867] Length = 250 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 75/217 (34%), Positives = 111/217 (51%), Gaps = 20/217 (9%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S ++ + ERLEFLGD +LG ++ LF + S+ E +S +V Sbjct: 37 LLRLALTHRSFANENGGLPNNERLEFLGDSVLGCSVAWKLFETYPSSPESVISKMRARIV 96 Query: 80 SAETCSQVARELDLASFI-----RVSSDLR-KDVCSFMTSIQADVVESLIAALYLDGGIE 133 S + +ARE+ L +I + +D R KD SI AD E++ A++L+ G E Sbjct: 97 SRFGLADIAREIGLGKYILLGRGEILTDGRDKD------SILADTTEAIFGAIFLEHGFE 150 Query: 134 VAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 A + + ++ + S D KT LQE A + PEY+ +F +GPDHD FT Sbjct: 151 AARHTILTLFHEKIVHASSDSIHTDWKTLLQERAAERKLPMPEYEASF-TGPDHDRFFTA 209 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAE---VLKREGI 225 I G G +K+AAEQ+AA + VL+ + I Sbjct: 210 TAIIDGKVVGTGQGHNKKAAEQLAAKQAVTVLREQNI 246 >gi|227824522|ref|ZP_03989354.1| ribonuclease [Acidaminococcus sp. D21] gi|226905021|gb|EEH90939.1| ribonuclease [Acidaminococcus sp. D21] Length = 238 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 107/220 (48%), Gaps = 13/220 (5%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESY-----ERLEFLGDRILGLLISTLLFNHFDSA 66 R+G + SL++ ALTHSS ++ +E +RLEFLGD +L L++ST L+ + Sbjct: 15 RLGVTMQDLSLMDTALTHSSYAYECKEKVVPEFNQRLEFLGDSVLSLVVSTHLYLAYPEM 74 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG LS LV ET +++A++L + ++ + + SI AD ES++ A Sbjct: 75 DEGALSKFRAFLVCEETLAELAQDLAIGDYLLLGRGECHMGGRYNPSILADAFESVMGAY 134 Query: 127 YLDGGIE-----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 YLD G E + +DK + L + RD KT QE A+ Y+ Sbjct: 135 YLDAGYEKVRDLLTRVLIDKIPE---LTADGIDRDYKTRFQELIQAQGQTDIHYEEAGFD 191 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H+ F + V + G +K+ AEQ AA E L+ Sbjct: 192 GPPHNRTFFMKVIVGEKTYGTGSGRTKKLAEQRAAREALR 231 >gi|258652105|ref|YP_003201261.1| ribonuclease III [Nakamurella multipartita DSM 44233] gi|258555330|gb|ACV78272.1| ribonuclease III [Nakamurella multipartita DSM 44233] Length = 249 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 69/195 (35%), Positives = 97/195 (49%), Gaps = 11/195 (5%) Query: 26 ALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 ALTH S + H + ERLEFLGD +LG++++ L+ +EG L+ S+V+ Sbjct: 29 ALTHRSFAYEHGGLPTNERLEFLGDSVLGVVVTETLYRTHPELQEGRLAKLRASVVNMHA 88 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT-----F 138 + V R + L +R+ +SI AD VE++I A+YL G+EVA F Sbjct: 89 LAGVGRTIGLGDQLRLGKGEELTGGRDKSSIVADAVEAVIGAVYLQHGLEVARAVVLRLF 148 Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 D L +G D KT LQE A + PEY+V+ GPDH F V +SG Sbjct: 149 ADLLATAPQLGAGL---DWKTSLQELAAERGLGVPEYRVS-EEGPDHAKVFAARVLLSGS 204 Query: 199 APAQGMDCSKRAAEQ 213 A G +K+ AEQ Sbjct: 205 ARGTGTGRTKKEAEQ 219 >gi|218259360|ref|ZP_03475110.1| hypothetical protein PRABACTJOHN_00767 [Parabacteroides johnsonii DSM 18315] gi|218225152|gb|EEC97802.1| hypothetical protein PRABACTJOHN_00767 [Parabacteroides johnsonii DSM 18315] Length = 286 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 13/230 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M+ YS+L K +G+ N L E+A H S S + + ERLEFLGD IL +++ Sbjct: 15 MNKEPYSSLYKILGFYPDNIHLYEQAFHHKSSSIESSDGRWLNNERLEFLGDAILDAVVA 74 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++FNHF + +EG L+ + +V +T ++VA EL L + S+ V S + Sbjct: 75 DIVFNHFQNKREGFLTNTRSKIVQRDTLNRVAVELGLEKMVVYSA----KVNSHNNYMYG 130 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVT 172 + +E+LI A+YLD G EV F+ ++ + R + K+ L EW+ K ++ Sbjct: 131 NALEALIGAIYLDQGYEVCYNFIQNVLIKKYVNLETIARKEVNFKSSLIEWSQKNKLEIS 190 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + +F + D +P F V +S G+ SK+ ++Q AA +K+ Sbjct: 191 FDLIESF-TDNDGNPVFQTGVTLSDTQIGVGIGYSKKESQQSAAKMAIKK 239 >gi|281491298|ref|YP_003353278.1| ribonuclease III [Lactococcus lactis subsp. lactis KF147] gi|281375039|gb|ADA64557.1| Ribonuclease III [Lactococcus lactis subsp. lactis KF147] Length = 231 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 67/219 (30%), Positives = 106/219 (48%), Gaps = 7/219 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L+ G F + LL+ THSS ++ + + ERLEFLGD L L+IS L+ + Sbjct: 8 LKNDYGLVFNDEDLLKTVFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYLYRTYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGELS +S+V E+ + +R F+R+ K + ++ E+ + Sbjct: 68 EKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLFEAFLG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL++D G++ F+ ++ +K+ + + D KTELQE T YK+ G Sbjct: 128 ALFIDQGMDEVRKFI-QHVVIPHVKNDDYVKVIDYKTELQEVLQIGGETTISYKILKEEG 186 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P HD F V +G +G+ SK+ AEQ AA +K Sbjct: 187 PAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225 >gi|227494679|ref|ZP_03924995.1| ribonuclease III [Actinomyces coleocanis DSM 15436] gi|226831861|gb|EEH64244.1| ribonuclease III [Actinomyces coleocanis DSM 15436] Length = 256 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 71/201 (35%), Positives = 101/201 (50%), Gaps = 9/201 (4%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S + E ERLEFLGD +L ++++ L+ ++ + E LS ++V Sbjct: 35 LLILALTHRSFAFEVGNIEPNERLEFLGDSVLSIIVTEYLYKNYPQSSEANLSRMRGAIV 94 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S +T SQVAR + L FI + SI D+ E++I A YL G+E V Sbjct: 95 SEKTLSQVARNIRLGDFILLGKGENLTGGRDRDSILCDMTEAMIGATYLSHGLEATRRIV 154 Query: 140 DKYWK---QRALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + + + +RA++ GK D KT LQE+ A A G P Y+ GPDH F V + Sbjct: 155 EYHLRPFLERAVELGK-SSDYKTTLQEYCAEASLG-EPIYEAE-GFGPDHARYFIATVTV 211 Query: 196 SGLAPAQGMDCSKRAAEQVAA 216 G G SK+ A+ AA Sbjct: 212 GGELVGHGQASSKKGAKSEAA 232 >gi|301167246|emb|CBW26828.1| Ribonuclease III (RNase III) [Bacteriovorax marinus SJ] Length = 261 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 116/225 (51%), Gaps = 16/225 (7%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHF 63 L++ I + F N +LL +ALTHSS H ++SYERLEFLGD +L L+I+ LL F Sbjct: 27 NLQRNISHKFKNMALLYEALTHSSFGHECFGDSKKSYERLEFLGDSVLDLIITDLLQEKF 86 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG+LS SLV+ + ++A L++ + V K + +SI +DV E+++ Sbjct: 87 PAMVEGKLSKLRASLVNEVSLKELASSLEIERAVLVGKGELKAQGNLKSSILSDVFEAVL 146 Query: 124 AALYLDGGIEVAG----TFVDKYWK---QRALKSGKFRR-DAKTELQEWAHAKFGVTPEY 175 A+Y D +EV+ + ++ Y K Q L + + D+K+ LQE + F P+Y Sbjct: 147 GAIYKDSSLEVSKKSFISIIENYEKLSGQIYLDEKRLQEFDSKSRLQEMTMSLFKTLPKY 206 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 S + + +V+ + +G SK+ EQ A ++ Sbjct: 207 SAKELSNGNFEVEASVLDKF----LEKGEFSSKKKGEQKLAKNII 247 >gi|269797766|ref|YP_003311666.1| ribonuclease III [Veillonella parvula DSM 2008] gi|282849040|ref|ZP_06258429.1| ribonuclease III [Veillonella parvula ATCC 17745] gi|294791672|ref|ZP_06756820.1| ribonuclease III [Veillonella sp. 6_1_27] gi|294793530|ref|ZP_06758667.1| ribonuclease III [Veillonella sp. 3_1_44] gi|269094395|gb|ACZ24386.1| ribonuclease III [Veillonella parvula DSM 2008] gi|282581315|gb|EFB86709.1| ribonuclease III [Veillonella parvula ATCC 17745] gi|294455100|gb|EFG23472.1| ribonuclease III [Veillonella sp. 3_1_44] gi|294456902|gb|EFG25264.1| ribonuclease III [Veillonella sp. 6_1_27] Length = 246 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 69/217 (31%), Positives = 111/217 (51%), Gaps = 6/217 (2%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFDSAK 67 R+ ++ S+++ A TH+S ++ ++ + +RLEFLGD +L L+I LF + Sbjct: 25 RLDIPVSDISIIDCAFTHTSYANEHKSKHIHHNQRLEFLGDAVLDLIIGEYLFKTYPDMA 84 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ + V ++ + V+R L L ++ + R + SI AD ESLI A+Y Sbjct: 85 EGNLTKIKAATVCEDSLASVSRSLQLGQYLLLGHGERASGGNDRNSILADTFESLIGAIY 144 Query: 128 LDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 + + A FV K+ +++ GK +D KT LQE+ Y + SGPDH Sbjct: 145 ISTDYQTAMAFVLKHLTTYIMQALEGKRGKDYKTLLQEYVQRDGDKHIVYHLLSESGPDH 204 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F + VEI+G+ G SK+ AEQ AA L++ Sbjct: 205 AKTFHMEVEINGVTYEAGSGKSKKIAEQHAAQLTLEK 241 >gi|212695676|ref|ZP_03303804.1| hypothetical protein ANHYDRO_00193 [Anaerococcus hydrogenalis DSM 7454] gi|212677349|gb|EEB36956.1| hypothetical protein ANHYDRO_00193 [Anaerococcus hydrogenalis DSM 7454] Length = 228 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 108/193 (55%), Gaps = 17/193 (8%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+F N++L++ ALTHSS + ++ S ERLEFLGD IL L++S L+ + S E Sbjct: 18 IGYSFKNKNLIDVALTHSSYINESKDKNRSSNERLEFLGDSILDLVVSEELYKNHKSYPE 77 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI-----RVSSDLRKDVCSFMTSIQADVVESLI 123 G+L+ + +V + S+ + + +L+S++ +S + R+ S++AD E+ Sbjct: 78 GKLTKIRSRIVCTSSFSKASEKFNLSSYLLFGKGEISHNGREK-----KSVKADTFEAFC 132 Query: 124 AALYLDGGIEVAGTF-VDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 AA+YLD G F ++ Y++ + L++ D KT+LQE+ + +YK+ Sbjct: 133 AAIYLDAGYVFLKNFLMENYYQTVKELLENDLLFIDYKTKLQEYFNKTNRTILKYKLAKE 192 Query: 181 SGPDHDPRFTVVV 193 GP+H+ F + V Sbjct: 193 EGPEHNKTFYMDV 205 >gi|194097974|ref|YP_002001022.1| ribonuclease III [Neisseria gonorrhoeae NCCP11945] gi|239998445|ref|ZP_04718369.1| ribonuclease III [Neisseria gonorrhoeae 35/02] gi|240080149|ref|ZP_04724692.1| ribonuclease III [Neisseria gonorrhoeae FA19] gi|240117386|ref|ZP_04731448.1| ribonuclease III [Neisseria gonorrhoeae PID1] gi|240122943|ref|ZP_04735899.1| ribonuclease III [Neisseria gonorrhoeae PID332] gi|240125195|ref|ZP_04738081.1| ribonuclease III [Neisseria gonorrhoeae SK-92-679] gi|240127651|ref|ZP_04740312.1| ribonuclease III [Neisseria gonorrhoeae SK-93-1035] gi|238690180|sp|B4RJT7|RNC_NEIG2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|193933264|gb|ACF29088.1| ribonuclease III [Neisseria gonorrhoeae NCCP11945] Length = 239 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + +R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFAER-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 186 Query: 183 PDHDPRFTVVVEISGLA 199 +D F + ++ L Sbjct: 187 HANDSMFVISCDLGELG 203 >gi|146318845|ref|YP_001198557.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33] gi|145689651|gb|ABP90157.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33] Length = 196 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 66/195 (33%), Positives = 91/195 (46%), Gaps = 8/195 (4%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 ISH+ ERLEFLGD +L L+IS L+ + EGE+S ++ V E+ + +R Sbjct: 8 ISHN-----ERLEFLGDAVLQLMISKYLYQKYPDRPEGEMSKLRSTFVREESLAGFSRAC 62 Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 F+R+ K +I D E+ + AL LD G + F+ K R L+ G Sbjct: 63 GFDRFLRLGKGEEKSGGRNRDTILGDAFEAFLGALLLDKGEKTVEEFIHKVMIPR-LEKG 121 Query: 152 KFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 F R D KT LQE + Y+V SGP HD F V V +G SK+ Sbjct: 122 NFERVTDYKTALQEILQVNGEIAISYQVIAESGPAHDKTFEVEVSADQRVIGRGRGRSKK 181 Query: 210 AAEQVAAAEVLKREG 224 AEQ AA ++ G Sbjct: 182 LAEQAAAKNAVEARG 196 >gi|289450366|ref|YP_003474966.1| ribonuclease III [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184913|gb|ADC91338.1| ribonuclease III [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 245 Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 9/222 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHF 63 E +IGY+F N+ L +ALTHS+ S+ + E ERLEFLGD +LGL + LF F Sbjct: 17 NFENKIGYSFKNKKYLIEALTHSTYSYEHSMYGLECNERLEFLGDLVLGLTVGNHLFKTF 76 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG+LS +LV T + VA +L + + S AD E+++ Sbjct: 77 PTYPEGKLSKLKAALVCEPTLAIVAHNWELDKVLLLGKGEETSGGRNKPSSLADATEAVL 136 Query: 124 AALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTP-EYKVTF 179 A++ D A T + + + Q A+ +G D K+ L E K+ + + + Sbjct: 137 GAVFCDADFVAAATVILRALEPLIQEAV-AGNLVYDYKSALLEKIQTKYHSSQLRFVLLD 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +GP H P F + + + A + SK+ AEQ+AA + L+ Sbjct: 196 ETGPAHSPSFKMGIYLVNDLLATAIGSSKKEAEQIAAKQALQ 237 >gi|288923504|ref|ZP_06417623.1| ribonuclease III [Frankia sp. EUN1f] gi|288345162|gb|EFC79572.1| ribonuclease III [Frankia sp. EUN1f] Length = 281 Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 105/208 (50%), Gaps = 12/208 (5%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL++ALTH S ++ + ERLEFLGD +LGL+++ LF EG+L+ + Sbjct: 23 DPELLDRALTHRSYAYENGGLPTNERLEFLGDAVLGLIVTAALFRRHPDLPEGQLAKQRA 82 Query: 77 SLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S+V+ + VAR + + ++ + SI AD +E++I A+YL ++ Sbjct: 83 SVVNMRALADVARRIGPTGIGPYLLLGRGEEATGGRDKPSILADTLEAVIGAVYLSNSLD 142 Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 VA FV D + A + D KT LQE A G+ P V +GPDH RF Sbjct: 143 VASGFVHRLFDPLLDEAAGRGAGL--DWKTSLQEQT-ALLGLGPPDYVVTEAGPDHAKRF 199 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAA 217 T ++G +G SK+ AEQ AAA Sbjct: 200 TAFARVAGEVLGEGEGGSKKEAEQRAAA 227 >gi|188997575|ref|YP_001931826.1| Ribonuclease III [Sulfurihydrogenibium sp. YO3AOP1] gi|188932642|gb|ACD67272.1| Ribonuclease III [Sulfurihydrogenibium sp. YO3AOP1] Length = 249 Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 101/191 (52%), Gaps = 8/191 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65 LE+ IGY F ++SLL A+TH S Y + YE LEFLGD ++ L+IS +L F Sbjct: 24 LEQIIGYTFKDKSLLLAAITHRSFVAEYHKKIPDYEVLEFLGDAVISLIISEILIKQFPH 83 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EGELS +++VS S++AR + F+ +S + + S+ DV E++ A Sbjct: 84 AREGELSQYRSAIVSEAYLSKLARNIYFQDFVLISKGEKSQKGAERESLLCDVFEAVFGA 143 Query: 126 LYLDG--GIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +Y D +++ +K +K+ ++ RD K+ LQ +G P YK+ Sbjct: 144 IYTDCQYNLDIPREIFNKNFKEIVINDIQQENLPRDYKSLLQIETQRLYGKIPTYKLISS 203 Query: 181 SGPDHDPRFTV 191 GP+HD FTV Sbjct: 204 EGPEHDKTFTV 214 >gi|254493164|ref|ZP_05106335.1| ribonuclease III [Neisseria gonorrhoeae 1291] gi|268600776|ref|ZP_06134943.1| ribonuclease III [Neisseria gonorrhoeae PID18] gi|226512204|gb|EEH61549.1| ribonuclease III [Neisseria gonorrhoeae 1291] gi|268584907|gb|EEZ49583.1| ribonuclease III [Neisseria gonorrhoeae PID18] Length = 267 Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 39 HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 96 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + +R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 156 VSFDADFNTAEKVVRHLFAER-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 214 Query: 183 PDHDPRFTVVVEISGLA 199 +D F + ++ L Sbjct: 215 HANDSMFVISCDLGELG 231 >gi|56964064|ref|YP_175795.1| ribonuclease III [Bacillus clausii KSM-K16] gi|81365967|sp|Q5WFM6|RNC_BACSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56910307|dbj|BAD64834.1| ribonuclease III [Bacillus clausii KSM-K16] Length = 260 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 99/207 (47%), Gaps = 7/207 (3%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 R G F NR LL +A THSS + + ERLEFLGD +L L +S LF + + Sbjct: 39 RTGLTFENRKLLIQAFTHSSYVNEQRIFSSSDNERLEFLGDAVLELAVSQYLFKTYKNMS 98 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+++ S+V + ++ A EL + + ++ ADV E+ I ALY Sbjct: 99 EGDMTKLRASIVCEPSLARFAEELQFGKLVLLGKGEEVTGGRTRPALLADVFEAFIGALY 158 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +D G+E F+ ++ + +K G F + D K++LQE+ Y + GP H Sbjct: 159 MDQGLEPVFMFLARFMYPK-IKEGAFTYKMDFKSQLQEFVQRDNRGQIRYLIVQERGPAH 217 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAE 212 D F V+++ G SK+ AE Sbjct: 218 DREFVSDVQLNEETIGTGTGRSKKEAE 244 >gi|239917409|ref|YP_002956967.1| RNAse III [Micrococcus luteus NCTC 2665] gi|239838616|gb|ACS30413.1| RNAse III [Micrococcus luteus NCTC 2665] Length = 220 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 5/199 (2%) Query: 23 LEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LE+ALTH S ++ + ERLEFLGD +LG +++ +F + EG+L+ R ++VS Sbjct: 8 LERALTHRSFAYEQGGLPTNERLEFLGDSVLGYVVTDHIFTVYPDLAEGDLARRRAAVVS 67 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 ++VAR + + F+R+ + R+ + SI AD +E+LI A+Y+D G A V Sbjct: 68 TRALAKVARRIGIGPFVRLGTGERRTGGADKDSILADTLEALIGAVYVDHGAVAAAALVH 127 Query: 141 KYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 ++ + R D KT + E A ++ G+ GP HDPR+ + + Sbjct: 128 RHVVPLLDEPDLLRESTDWKTVVAEAA-SRHGLGAVRYAIEGQGPAHDPRYRATLVVGER 186 Query: 199 APAQGMDCSKRAAEQVAAA 217 + SK+ AE+ AAA Sbjct: 187 EYGSAVASSKKQAERDAAA 205 >gi|161869625|ref|YP_001598793.1| ribonuclease III [Neisseria meningitidis 053442] gi|161595178|gb|ABX72838.1| ribonuclease III [Neisseria meningitidis 053442] Length = 310 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 82 HAAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPK 138 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+D+ + + + K SI AD +E++ AA Sbjct: 139 LTEGELSRLRASLVNEGVLAEMAAEMDVGEGLYLGAGELKSGGFRRPSILADAMEAMFAA 198 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 199 VSFDADFNTAEKVVRHLFADR-VRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 257 Query: 183 PDHDPRFTVVVEISGLA 199 +D F + ++ L Sbjct: 258 HANDSMFVISCDLGELG 274 >gi|327403887|ref|YP_004344725.1| Ribonuclease 3 [Fluviicola taffensis DSM 16823] gi|327319395|gb|AEA43887.1| Ribonuclease 3 [Fluviicola taffensis DSM 16823] Length = 240 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 68/215 (31%), Positives = 112/215 (52%), Gaps = 12/215 (5%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSAKEG 69 R GY N L +A+TH SI++ Q+ + ERLEFLGD IL +I+ LF F EG Sbjct: 26 RFGYRPKNIELFYQAVTHRSIAYHGQKDFSNERLEFLGDAILDSIIAEFLFQRFPEEDEG 85 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 L+ + +VS +T S++ EL+L S +R + K ++S++ + E++I A+YLD Sbjct: 86 YLTKVKSKVVSRKTLSEIGEELELRSILRYN----KGRSINLSSLEGNAFEAIIGAIYLD 141 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 E + + ++ + K D K++L W+ + + E+ V R +H Sbjct: 142 SSYEETKKIIYNHIFRKYVDLNKILEEEIDFKSKLFIWSQKR-RLALEF-VVLREENNHG 199 Query: 187 PRF-TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F V+V+++ + +G SK+ AEQ AA E L Sbjct: 200 TWFYEVIVQVNSVNYGKGSGNSKKLAEQAAAKETL 234 >gi|254673607|emb|CBA09131.1| ribonuclease III [Neisseria meningitidis alpha275] Length = 267 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++KR+GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 39 HAAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPK 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 96 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 156 VSFDADFNTAEKVVRHLFADR-VRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 214 Query: 183 PDHDPRFTVVVEISGLA 199 +D F V ++ L Sbjct: 215 HANDSMFVVSCDLGELG 231 >gi|313668838|ref|YP_004049122.1| ribonuclease III [Neisseria lactamica ST-640] gi|313006300|emb|CBN87763.1| putative ribonuclease III [Neisseria lactamica 020-06] Length = 239 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 104/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HAAIQKKLGYAFRDISLLRQALTHRS---CHTKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + R ++ F+ +DAKT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFADR-VRRADFQNQAKDAKTALQEALQARRFALPKYRIEEQIG 186 Query: 183 PDHDPRFTVVVEISGLA 199 +D F + ++ L Sbjct: 187 HANDSMFVISCDLGELG 203 >gi|300783718|ref|YP_003764009.1| ribonuclease III [Amycolatopsis mediterranei U32] gi|299793232|gb|ADJ43607.1| ribonuclease III [Amycolatopsis mediterranei U32] Length = 234 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 105/208 (50%), Gaps = 14/208 (6%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL +LTH S ++ ERLEFLGD +LGL+++ L+N EG+L+ Sbjct: 10 DPELLRLSLTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLYNTHPDLPEGQLAKLRA 69 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIE 133 S+V+ ++VAR L + + + SI AD +E++I A+YL+ GIE Sbjct: 70 SVVNMHALARVARGLGEGGLGAHLLLGKGEELTGGRDKASILADGLEAVIGAVYLEHGIE 129 Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPR 188 +A V D + L+ D KT LQE A A GV PEYKV +GPDH Sbjct: 130 IARKLVHHLFDGLLAEAPLRGAGL--DWKTSLQELTASAGLGV-PEYKVE-DTGPDHRKE 185 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAA 216 FT V ++G G +K+ AEQ AA Sbjct: 186 FTATVLVAGRPLGHGAGSTKKEAEQKAA 213 >gi|126654291|ref|ZP_01726068.1| ribonuclease III [Bacillus sp. B14905] gi|126589255|gb|EAZ83416.1| ribonuclease III [Bacillus sp. B14905] Length = 254 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 7/218 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLF 60 ++ L+ + F N++LL +A THSS + ++ ERLEFLGD +L L +S LF Sbjct: 22 QFELLQHELNITFVNKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EGEL+ S+V + A EL F+ + ++ ADV E Sbjct: 82 EKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 S + ALYLD ++ +F+++ + ++ G F D K++LQE Y++ Sbjct: 142 SFVGALYLDQDLQTVVSFLERIVFPK-VEVGAFSHVMDFKSQLQEMVQQTNNGLLHYEII 200 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GP H+ F V ++G G SK+ AEQ AA Sbjct: 201 DEKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAA 238 >gi|320541047|ref|ZP_08040477.1| RNase III [Serratia symbiotica str. Tucson] gi|320028891|gb|EFW11140.1| RNase III [Serratia symbiotica str. Tucson] Length = 172 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 3/167 (1%) Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ F EG++S +LV T +++ARE DL +R+ K S SI AD Sbjct: 2 LYQRFPHIDEGDMSRMRATLVRGHTLAEMAREFDLGECLRLGPGELKSGGSRRESILADT 61 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 VE+LI ++LD ++ + +++ R + G ++D KT LQE P Y Sbjct: 62 VEALIGGVFLDSDMQRVERLILDWYRSRLDEISPGDKQKDPKTRLQELLQGHHLPLPSYL 121 Query: 177 VTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 V G HD FT+ ++SGL P G+ S+R AEQ AA + LK+ Sbjct: 122 VVQVRGEAHDQEFTIHCQVSGLNEPVMGIGSSRRKAEQAAAEQTLKK 168 >gi|268564825|ref|XP_002639240.1| C. briggsae CBR-DRSH-1 protein [Caenorhabditis briggsae] gi|74847096|sp|Q61XX9|RNC_CAEBR RecName: Full=Ribonuclease 3; AltName: Full=Protein drosha; AltName: Full=Ribonuclease III; Short=RNase III gi|187036021|emb|CAP24627.1| CBR-DRSH-1 protein [Caenorhabditis briggsae AF16] Length = 1061 Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 104/203 (51%), Gaps = 15/203 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+ IG F N LL KA T ++ + + +RLE+LGD +L L+IS L+ +F Sbjct: 811 FHRLEQIIGIEFNNIRLLAKAFTRRNVPFNDLTKGHNQRLEWLGDSVLQLIISDYLYRNF 870 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG +S+ SLVS +T S V +L F+ + + RK+ +AD+VE+ I Sbjct: 871 PLHHEGHMSLLRTSLVSNQTQSVVCDDLGFQEFV-IKAPHRKN--DLKMKDKADLVEAFI 927 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHA------KFGVTPE 174 ALY+D G+E +F+ + R + S K+ DAK+ LQ+W A PE Sbjct: 928 GALYVDKGLEYCRSFIRTVFCPRLKHFINSEKW-NDAKSHLQQWCLAIRDSRNPNPAMPE 986 Query: 175 YKVTFRSGPDHDPRFTVVVEISG 197 Y++ GP ++ F V V G Sbjct: 987 YRLLGIQGPTNNRIFRVAVYFRG 1009 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 54/195 (27%) Query: 7 STLEKRIGYAFANRSLLEKALTHSS---------------ISH-SYQESY---------- 40 S EK I Y F +R ++E AL HSS IS+ Y++ Y Sbjct: 587 SVFEKVIEYKFNDRRIVELALIHSSFRSYYGTTPDHVKNMISNCGYRKKYGAEERREKKK 646 Query: 41 ----------------------ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 ERLE+LGD ++ L+ S LF + EG L+ +L Sbjct: 647 GIISLFNIMGGETSGGEPILHNERLEYLGDAVVELIASHHLFFILNHHFEGGLATYRTAL 706 Query: 79 VSAETCSQVARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 V +++A + ++ + +DL + + A+ E+L+A ++LD GI Sbjct: 707 VQNRNLAKLAMNCRIDEMLQFAHGADLINE--AEWKHALANAFEALMAGVFLDSGIAPCD 764 Query: 137 TFVDK--YWKQRALK 149 K Y K +K Sbjct: 765 AIFSKAMYGKDPEMK 779 >gi|317125435|ref|YP_004099547.1| RNAse III [Intrasporangium calvum DSM 43043] gi|315589523|gb|ADU48820.1| RNAse III [Intrasporangium calvum DSM 43043] Length = 265 Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 70/217 (32%), Positives = 108/217 (49%), Gaps = 12/217 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+ +G + LL ++LTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 27 LEEVVGQEI-DEPLLLRSLTHRSFAYENGGVPNNERLEFLGDSVLGLVVTDTLYRSHPDL 85 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V+ + VAR DL ++ + SI AD +E+LI + Sbjct: 86 PEGQLAKLRAAVVNMRALADVARTFDLGQYVMLGKGEEATGGRDKASILADSMEALIGTV 145 Query: 127 YLDGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 YL I++A F+ ++ + L +G D KT LQ+ A A PEY+V Sbjct: 146 YLSTDIDLAAQFIHHHFDAILEEAATLGAG---LDWKTSLQQVAAAVGQGAPEYRVA-EQ 201 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 GPDH+ F V + +G SK+ AEQ AA E Sbjct: 202 GPDHEKEFHARVVLGEEVLGEGHGRSKKEAEQKAAQE 238 >gi|303229664|ref|ZP_07316452.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a] gi|302515789|gb|EFL57743.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a] Length = 247 Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 104/209 (49%), Gaps = 8/209 (3%) Query: 21 SLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 S+L+ A TH+S ++ ++ + +RLEFLGD +L L+I LF + EG L+ Sbjct: 35 SILDCAFTHTSYANEHKFKHIHHNQRLEFLGDAVLDLIIGEYLFTTYPDMSEGNLTKIKA 94 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + V ++ + V+R L L ++ + + S SI AD ESLI ALY+ + Sbjct: 95 ATVCEDSLATVSRTLHLGDYLLLGHGEKSSGGSDRKSILADTFESLIGALYITTDYKTVM 154 Query: 137 TFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 FV ++AL+ GK +D KT LQE+ Y + SGPDH F + V Sbjct: 155 DFVLHQLAPNLKQALE-GKRGKDYKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEV 213 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 I G+ G SK+ AEQ AA L+R Sbjct: 214 SIDGITYEAGTGKSKKIAEQHAAQLTLER 242 >gi|294507352|ref|YP_003571410.1| Ribonuclease III [Salinibacter ruber M8] gi|294343680|emb|CBH24458.1| Ribonuclease III [Salinibacter ruber M8] Length = 243 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 103/220 (46%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + +E+ +G + S +ALTH S+ + S ERLEFLGD +L + + +L++ Sbjct: 14 AAIEQLVGRPVDDLSHYRRALTHRSLLRVHPARTFRSNERLEFLGDALLDVFVGEVLYDR 73 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ LVS + AR L L + +S + + SI AD E+ Sbjct: 74 FPEKDEGALTRLRARLVSERPLATYARGLGLGPHLLMSENAAEGDGRDNPSILADAFEAF 133 Query: 123 IAALYLDGGIEVAGTFV-DKYWKQRALKSGKFRRDA-KTELQEWAHAKFGVTPEYKVTFR 180 + A+YLD G E A FV D+ L+ R D K++L E A P Y V Sbjct: 134 VGAVYLDLGHEAARGFVQDRVLAPVDLEDVATRDDNYKSQLLEHLQALGRPQPTYHVVEE 193 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP HD FTV V + +G SK+ AEQ AA L Sbjct: 194 KGPSHDKTFTVEVRVGDADYERGTAGSKQDAEQQAARRTL 233 >gi|59800710|ref|YP_207422.1| ribonuclease III [Neisseria gonorrhoeae FA 1090] gi|75432565|sp|Q5F9X7|RNC_NEIG1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|59717605|gb|AAW89010.1| putative ribonuclease III [Neisseria gonorrhoeae FA 1090] Length = 239 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + +R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFAER-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 186 Query: 183 PDHDPRFTVVVEISGLA 199 D F + ++ L Sbjct: 187 HADDSMFVISCDLGELG 203 >gi|297250746|ref|ZP_06864987.2| ribonuclease III [Neisseria polysaccharea ATCC 43768] gi|296838254|gb|EFH22192.1| ribonuclease III [Neisseria polysaccharea ATCC 43768] Length = 267 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 102/197 (51%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++KR+GYAF + SLL +ALTH S + E R EF+GD IL ++ +LF+ F Sbjct: 39 HAAIQKRLGYAFRDISLLRQALTHRSCHTKHNE---RFEFVGDSILNYTVARMLFDAFPK 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 96 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 156 VSFDADFNTAEKVVRHLFADR-VRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 214 Query: 183 PDHDPRFTVVVEISGLA 199 +D F V ++ L Sbjct: 215 YANDSMFVVSCDLGELG 231 >gi|268594306|ref|ZP_06128473.1| ribonuclease III [Neisseria gonorrhoeae 35/02] gi|268596300|ref|ZP_06130467.1| ribonuclease III [Neisseria gonorrhoeae FA19] gi|268603082|ref|ZP_06137249.1| ribonuclease III [Neisseria gonorrhoeae PID1] gi|268681562|ref|ZP_06148424.1| ribonuclease III [Neisseria gonorrhoeae PID332] gi|268683791|ref|ZP_06150653.1| ribonuclease III [Neisseria gonorrhoeae SK-92-679] gi|268686031|ref|ZP_06152893.1| ribonuclease III [Neisseria gonorrhoeae SK-93-1035] gi|268547695|gb|EEZ43113.1| ribonuclease III [Neisseria gonorrhoeae 35/02] gi|268550088|gb|EEZ45107.1| ribonuclease III [Neisseria gonorrhoeae FA19] gi|268587213|gb|EEZ51889.1| ribonuclease III [Neisseria gonorrhoeae PID1] gi|268621846|gb|EEZ54246.1| ribonuclease III [Neisseria gonorrhoeae PID332] gi|268624075|gb|EEZ56475.1| ribonuclease III [Neisseria gonorrhoeae SK-92-679] gi|268626315|gb|EEZ58715.1| ribonuclease III [Neisseria gonorrhoeae SK-93-1035] gi|317163728|gb|ADV07269.1| ribonuclease III [Neisseria gonorrhoeae TCDC-NG08107] Length = 267 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 39 HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 96 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + +R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 156 VSFDADFNTAEKVVRHLFAER-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 214 Query: 183 PDHDPRFTVVVEISGLA 199 +D F + ++ L Sbjct: 215 HANDSMFVISCDLGELG 231 >gi|332670942|ref|YP_004453950.1| ribonuclease III [Cellulomonas fimi ATCC 484] gi|332339980|gb|AEE46563.1| ribonuclease III [Cellulomonas fimi ATCC 484] Length = 258 Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 97/202 (48%), Gaps = 5/202 (2%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL ALTH S +H + ERLEFLGD +LGL+++ L+ EG L+ Sbjct: 17 DPELLVLALTHRSFAHEAGGIPTNERLEFLGDTVLGLVVTESLYRRHPEQPEGALAKMRA 76 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + VS + VARELDL +++ + + SI +D +E+L A+YL G+E A Sbjct: 77 ATVSQRALAGVARELDLGAYVLLGKGELATGGADKDSILSDTLEALFGAVYLAHGLETAR 136 Query: 137 TFVDKYWKQRALKSGKFRRDA--KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 VD++ + KT LQE + A P Y V GPDH FT Sbjct: 137 VVVDRFVGPTLDAAAALGAGLDWKTSLQELSAALGLGAPSYDVVGE-GPDHARTFTARAV 195 Query: 195 ISGLAPAQGMDCSKRAAEQVAA 216 I+G G +K+ AEQ AA Sbjct: 196 IAGEPRGAGSGPAKKLAEQHAA 217 >gi|309776509|ref|ZP_07671491.1| ribonuclease III [Erysipelotrichaceae bacterium 3_1_53] gi|308915737|gb|EFP61495.1| ribonuclease III [Erysipelotrichaceae bacterium 3_1_53] Length = 227 Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 107/212 (50%), Gaps = 6/212 (2%) Query: 16 AFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 A+++++L+ +AL HSS + SY ERLEF+GD +L L + LF EG+++ Sbjct: 14 AYSDKTLITQALVHSSYVNEHKSYAHDNERLEFMGDAVLQLWTTKKLFLLEPELSEGQMT 73 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV E ++ R+L L ++ + K SI AD+ E+L+ A++LD G+ Sbjct: 74 TLRAQLVCEEALAEYNRQLGLGKYLMLGVGEEKTGGRQRDSILADMFEALLGAVFLDQGM 133 Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 + A+ K + D KT+LQE+ + T Y+ SGP + P F Sbjct: 134 AAIDIILSAVVTP-AISRPKSEKVIDYKTKLQEYIQSDSRKTVHYETVNVSGPSNKPEFE 192 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V+V + + +G SK+ AEQ+AA + ++ Sbjct: 193 VIVMLDDINLGRGKGFSKKRAEQMAAKDAFEK 224 >gi|229168588|ref|ZP_04296311.1| Ribonuclease 3 [Bacillus cereus AH621] gi|228614994|gb|EEK72096.1| Ribonuclease 3 [Bacillus cereus AH621] Length = 245 Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 110/223 (49%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A E+ S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G+E+ ++ + + + G F D K++LQE EY++ Sbjct: 139 FIGALYLDQGLEIVWGYLKEVVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQ 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++ A G SK+ AEQ AAAE LK+ Sbjct: 198 EKGPAHNREFVSRVTLNNEALGLGSGKSKKEAEQQAAAEALKK 240 >gi|156359582|ref|XP_001624846.1| predicted protein [Nematostella vectensis] gi|156211649|gb|EDO32746.1| predicted protein [Nematostella vectensis] Length = 917 Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 17/223 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 E+ G F + LL +A TH + + +RLEFLGD +L ++S L+ HF Sbjct: 681 FEEGSGIPFTHIRLLARAFTHPQVGKNNLTLGDNQRLEFLGDSVLQFVVSVFLYQHFPDH 740 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQADVVESLIAA 125 EG L++ +SLV++ + +++AR+L+L FI +++R+ + ADV+E+LIAA Sbjct: 741 HEGHLTLLRSSLVNSRSQAEIARQLNLQEFINTGPTNVRE-------KMLADVLEALIAA 793 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHA-----KFGVTPEYKVT 178 +++D G+ F + R S + D+K++LQ+ A K P Y++ Sbjct: 794 VFVDKGLRHVEVFCRVCFFSRLEDSIVNQEWIDSKSQLQQCCLAMRTEGKSPDLPIYRIL 853 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +GP H ++ V V G +G S AE AA + L+ Sbjct: 854 QDAGPAHHKKYQVGVYFQGTRCGKGEGSSIHQAEMAAAKDALE 896 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 4/97 (4%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD +L L+ S LF EG L+ ++LV + +A+ LDL+ +++ S Sbjct: 537 ERLEFLGDAVLELICSKHLFFMLPDMDEGHLATFRSALVQNRHLALLAKMLDLSDYMQFS 596 Query: 101 SDLRKDVCS--FMTSIQADVVESLIAALYLDGGIEVA 135 D+C + A+ +E+L+ A+YL+ G++VA Sbjct: 597 HG--PDLCQEDDLNHAMANCLEALLGAVYLEAGLQVA 631 >gi|269214809|ref|ZP_05987185.2| ribonuclease III [Neisseria lactamica ATCC 23970] gi|269208949|gb|EEZ75404.1| ribonuclease III [Neisseria lactamica ATCC 23970] Length = 267 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 104/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 39 HAAIQKKLGYAFRDISLLRQALTHRS---CHTKHNERFEFVGDSILNYTVARMLFDAFPK 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 96 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + R ++ F+ +DAKT LQE A+ P+Y++ + G Sbjct: 156 VSFDADFNTAEKVVRHLFADR-VRRADFQNQAKDAKTALQEALQARRFALPKYRIEEQIG 214 Query: 183 PDHDPRFTVVVEISGLA 199 +D F + ++ L Sbjct: 215 HANDSMFVISCDLGELG 231 >gi|169827094|ref|YP_001697252.1| ribonuclease 3 [Lysinibacillus sphaericus C3-41] gi|168991582|gb|ACA39122.1| Ribonuclease 3 [Lysinibacillus sphaericus C3-41] Length = 254 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 7/218 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLF 60 ++ L+ + F N++LL +A THSS + ++ ERLEFLGD +L L +S LF Sbjct: 22 QFELLQHELNITFINKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EGEL+ S+V + A EL F+ + ++ ADV E Sbjct: 82 EKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 S + ALYLD ++ +F+++ + ++ G F D K++LQE Y++ Sbjct: 142 SFVGALYLDQDLQTVVSFLERIVFPK-VEVGAFSHVMDFKSQLQEMVQQTNNGLLHYEII 200 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GP H+ F V ++G G SK+ AEQ AA Sbjct: 201 DEKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAA 238 >gi|299536778|ref|ZP_07050086.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1] gi|298727790|gb|EFI68357.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1] Length = 254 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 7/218 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLF 60 ++ L+ + F N++LL +A THSS + ++ ERLEFLGD +L L +S LF Sbjct: 22 QFELLQHELNITFINKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EGEL+ S+V + A EL F+ + ++ ADV E Sbjct: 82 EKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 S + ALYLD ++ +F+++ + ++ G F D K++LQE Y++ Sbjct: 142 SFVGALYLDQDLQTVVSFLERVVFPK-VEVGAFSHVMDFKSQLQEMVQQTNNGLLHYEII 200 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GP H+ F V ++G G SK+ AEQ AA Sbjct: 201 DEKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAA 238 >gi|240013570|ref|ZP_04720483.1| ribonuclease III [Neisseria gonorrhoeae DGI18] gi|240112363|ref|ZP_04726853.1| ribonuclease III [Neisseria gonorrhoeae MS11] gi|240120639|ref|ZP_04733601.1| ribonuclease III [Neisseria gonorrhoeae PID24-1] gi|260441082|ref|ZP_05794898.1| ribonuclease III [Neisseria gonorrhoeae DGI2] Length = 239 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + +R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFAER-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 186 Query: 183 PDHDPRFTVVVEISGLA 199 D F + ++ L Sbjct: 187 HADDSMFVISCDLGELG 203 >gi|261408033|ref|YP_003244274.1| ribonuclease III [Paenibacillus sp. Y412MC10] gi|329929588|ref|ZP_08283295.1| ribonuclease III [Paenibacillus sp. HGF5] gi|261284496|gb|ACX66467.1| ribonuclease III [Paenibacillus sp. Y412MC10] gi|328936233|gb|EGG32685.1| ribonuclease III [Paenibacillus sp. HGF5] Length = 233 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 109/220 (49%), Gaps = 7/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI--SHSYQESY--ERLEFLGDRILGLLISTLLFNHFD 64 L+ ++ F N LL++A TH+S H + +S ERLEFLGD +L L +S L+N F Sbjct: 9 LQHKLQIQFRNAMLLKQAFTHASYVNEHRFSQSQDNERLEFLGDAVLELTVSEFLYNLFP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ ++V + Q A LD ++ + ++ ADV ES + Sbjct: 69 DRPEGELTKLRAAIVCEPSLVQFAVSLDFGRYVLLGKGEEMTGGRTRPALLADVFESFVG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWA-HAKFGVTPEYKVTFRSG 182 ALYLD G+E F+ + +G+ + D KTELQE H G EY++ G Sbjct: 129 ALYLDQGLEAVRRFLSDHVFPTVTVNGRPQMSDYKTELQELTQHHGMGAL-EYRIVEERG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P H+ F V + +G SK+ AEQ AAA LK+ Sbjct: 188 PAHEREFVSEVYMGSECLGRGSGRSKKEAEQQAAAVALKQ 227 >gi|315640113|ref|ZP_07895235.1| ribonuclease III [Enterococcus italicus DSM 15952] gi|315484090|gb|EFU74564.1| ribonuclease III [Enterococcus italicus DSM 15952] Length = 233 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 101/209 (48%), Gaps = 7/209 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 ++L++ F LLE+A THSS + ++ ERLEFLGD +L LL+S L+ Sbjct: 10 TSLKENYQIVFQEIGLLEQAFTHSSYVNEHRNMALSDNERLEFLGDAVLELLVSQYLYRK 69 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+L+ S+V ++ ++ ARE +IR+ S+ D+ ES Sbjct: 70 FPEIPEGKLTKLRASMVREDSLAEFARECGFDQYIRLGKGEENSGGRQRNSLLCDLFESF 129 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + ALYLD +E F+ K + + +G F D KT+LQE V +Y++T Sbjct: 130 LGALYLDQELEAVNQFLKKVVFPK-VDAGAFSHEMDHKTKLQEVLQRAGDVFIDYRLTNE 188 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V G +G SK+ Sbjct: 189 EGPAHERVFWTEVYCDGQLIGRGQGKSKK 217 >gi|238063283|ref|ZP_04607992.1| ribonuclease III [Micromonospora sp. ATCC 39149] gi|237885094|gb|EEP73922.1| ribonuclease III [Micromonospora sp. ATCC 39149] Length = 296 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 104/204 (50%), Gaps = 12/204 (5%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LLE+ALTH S ++ + ERLEFLGD +LG++I+T LF++ EG+L+ S+V Sbjct: 26 LLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDLPEGQLAKLRASVV 85 Query: 80 SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + + VAR L L +++ + SI AD +E+L+ A+YL G++ A Sbjct: 86 NMRALADVARGLGPDGLGAYLLLGKGEESTGGRDKASILADTLEALLGAIYLQYGLDTAA 145 Query: 137 TFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 + D + A + D KT LQE A PEY++ +GPDH FT Sbjct: 146 IVIHRLFDPLMAESAGRGAAL--DWKTSLQELTAALGLGVPEYRIEG-TGPDHLKTFTAW 202 Query: 193 VEISGLAPAQGMDCSKRAAEQVAA 216 V ++G SK+ AEQ AA Sbjct: 203 VVVAGNRYGGAEGRSKKEAEQRAA 226 >gi|254804568|ref|YP_003082789.1| ribonuclease III family protein [Neisseria meningitidis alpha14] gi|254668109|emb|CBA04665.1| ribonuclease III family protein [Neisseria meningitidis alpha14] gi|254670529|emb|CBA06329.1| ribonuclease III [Neisseria meningitidis alpha153] Length = 310 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++KR+GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 82 HAAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPK 138 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 139 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 198 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + +R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 199 VSFDADFNTAEKVVRHLFAER-VRRVDFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 257 Query: 183 PDHDPRFTVVVEISGLA 199 +D F V ++ L Sbjct: 258 HANDSMFVVSCDLGELG 274 >gi|313678609|ref|YP_004056349.1| ribonuclease III [Mycoplasma bovis PG45] gi|312950171|gb|ADR24766.1| ribonuclease III [Mycoplasma bovis PG45] Length = 224 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 107/202 (52%), Gaps = 8/202 (3%) Query: 25 KALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +A TH SS +++ ++Y+ LEFLGD IL +S +LFN F +G+L++ LV ++ Sbjct: 23 QAFTHGSSAANAKNKNYQTLEFLGDAILQFYVSAILFNVFKDKNQGQLTLIRAKLVCTDS 82 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 + +A L L F+ +SS++ + + AD+ ESL+AA+++D G+ F+DK Sbjct: 83 LNSIADRLKLKDFLLLSSNVVANEVLSSKKVGADIFESLVAAIFIDQGMPKVKEFLDKTL 142 Query: 144 KQ--RALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + K GK +D+KT LQE+ + F + T++S + +F G Sbjct: 143 LPLVKQYKEGKIELKDSKTRLQEYMQS-FSKKTVFYQTYQS---DNNQFKSEAIYEGNVY 198 Query: 201 AQGMDCSKRAAEQVAAAEVLKR 222 G+ SK AE+ AA + L + Sbjct: 199 GSGLGKSKHEAEENAANDALNK 220 >gi|315502406|ref|YP_004081293.1| ribonuclease iii [Micromonospora sp. L5] gi|315409025|gb|ADU07142.1| ribonuclease III [Micromonospora sp. L5] Length = 267 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/217 (33%), Positives = 109/217 (50%), Gaps = 13/217 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE G + + LLE+ALTH S ++ + ERLEFLGD +LG++I+T LF++ Sbjct: 14 LEAAFGVSL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDL 72 Query: 67 KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ S+V+ + VAR L L +++ + SI AD +E+L+ Sbjct: 73 PEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEEATGGRDKASILADTLEALL 132 Query: 124 AALYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 A+YL G++ A + D + A + D KT LQE A PEY++ Sbjct: 133 GAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAAL--DWKTSLQELTAALGLGVPEYRIEG 190 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +GPDH FT V ++G SK+ AEQ AA Sbjct: 191 -TGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAA 226 >gi|302865861|ref|YP_003834498.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029] gi|302568720|gb|ADL44922.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029] Length = 267 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/217 (33%), Positives = 109/217 (50%), Gaps = 13/217 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE G + + LLE+ALTH S ++ + ERLEFLGD +LG++I+T LF++ Sbjct: 14 LEAAFGVSL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDL 72 Query: 67 KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ S+V+ + VAR L L +++ + SI AD +E+L+ Sbjct: 73 PEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEEATGGRDKASILADTLEALL 132 Query: 124 AALYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 A+YL G++ A + D + A + D KT LQE A PEY++ Sbjct: 133 GAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAAL--DWKTSLQELTAALGLGVPEYRIEG 190 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +GPDH FT V ++G SK+ AEQ AA Sbjct: 191 -TGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAA 226 >gi|325203773|gb|ADY99226.1| ribonuclease III [Neisseria meningitidis M01-240355] Length = 239 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HAAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFADR-VRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 186 Query: 183 PDHDPRFTVVVEISGLA 199 +D F V ++ L Sbjct: 187 HANDSMFVVSCDLGELG 203 >gi|242373525|ref|ZP_04819099.1| ribonuclease III [Staphylococcus epidermidis M23864:W1] gi|242348888|gb|EES40490.1| ribonuclease III [Staphylococcus epidermidis M23864:W1] Length = 248 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 102/216 (47%), Gaps = 11/216 (5%) Query: 14 GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 G++F N L ++A +HSS + + + ERLEFLGD +L L +S LF+ EG Sbjct: 25 GFSFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPHLPEG 84 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 L+ ++V + A ++DL I + K S+ +D E+ + ALYLD Sbjct: 85 NLTKMRATIVCEPSLVIFANKIDLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLD 144 Query: 130 GGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 G+E F +K Y + L D KT+ QE+ H + Y++ GP H Sbjct: 145 QGLETVWAFAEKVIFPYVEDNELVG---VVDFKTQFQEFVHRQNKGDVTYRLIKEEGPAH 201 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 FT V + A A+G +K+ +EQ AA + K Sbjct: 202 HRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYK 237 >gi|315648181|ref|ZP_07901282.1| ribonuclease III [Paenibacillus vortex V453] gi|315276827|gb|EFU40170.1| ribonuclease III [Paenibacillus vortex V453] Length = 232 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 109/220 (49%), Gaps = 7/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI--SHSYQESY--ERLEFLGDRILGLLISTLLFNHFD 64 L+ ++ F N LL++A TH+S H + +S ERLEFLGD +L L +S L+N F Sbjct: 8 LQHKLQIQFRNAMLLKQAFTHASYVNEHRFSQSQDNERLEFLGDAVLELTVSEFLYNLFP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ ++V + Q A LD ++ + ++ ADV ES + Sbjct: 68 DRPEGELTKLRAAIVCEPSLVQFAVGLDFGRYVLLGKGEEMTGGRTRPALLADVFESFVG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWA-HAKFGVTPEYKVTFRSG 182 ALYLD G+E F+ + +G+ + D KTELQE H G EY++ G Sbjct: 128 ALYLDQGLEAVRRFLSDHVFPSVTVNGRPQMSDYKTELQELTQHHGMGAL-EYRIVEERG 186 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P H+ F V + +G SK+ AEQ AAA LK+ Sbjct: 187 PAHEREFVSEVYMGSECLGRGSGRSKKEAEQQAAAVALKQ 226 >gi|289705863|ref|ZP_06502243.1| ribonuclease III [Micrococcus luteus SK58] gi|289557406|gb|EFD50717.1| ribonuclease III [Micrococcus luteus SK58] Length = 244 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 5/199 (2%) Query: 23 LEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LE+ALTH S ++ + ERLEFLGD +LG +++ +F + EG+L+ R ++VS Sbjct: 32 LERALTHRSFAYEQGGLPTNERLEFLGDSVLGYVVTDHIFTVYPDLAEGDLARRRAAVVS 91 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 ++VAR + + F+R+ + R+ + SI AD +E+LI A+Y+D G A V Sbjct: 92 TRALAKVARRIGIGPFVRLGTGERRTGGADKDSILADTLEALIGAVYVDHGAVAAAALVH 151 Query: 141 KYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 ++ + R D KT + E A ++ G+ GP HDPR+ + + Sbjct: 152 RHVVPLLDEPDLLRESTDWKTVVAEAA-SRHGLGAVRYAIEGQGPAHDPRYRATLVVGER 210 Query: 199 APAQGMDCSKRAAEQVAAA 217 + SK+ AE+ AAA Sbjct: 211 EYDSAVASSKKQAERDAAA 229 >gi|298369788|ref|ZP_06981104.1| ribonuclease III [Neisseria sp. oral taxon 014 str. F0314] gi|298281248|gb|EFI22737.1| ribonuclease III [Neisseria sp. oral taxon 014 str. F0314] Length = 302 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 10/206 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +++R+G+ F LL++ALTH S + ++ ER EF+GD IL I+ +LF+ F Sbjct: 74 HQAIQRRLGHKFVRIELLQQALTHRSFN---AKNNERFEFVGDAILNYSIAKMLFDAFPK 130 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS +LV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 131 LTEGELSRLRANLVNEHVLAEIALEMNIGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 190 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D G A V + +R +K F+ +D KT LQE A+ P+Y++ + G Sbjct: 191 VSFDAGFAAAEEVVRHLFAER-VKRVDFKNQGKDNKTVLQEALQARHLPLPKYRIEEQVG 249 Query: 183 PDHDPRFTV---VVEISGLAPAQGMD 205 D RF V + E+ + AQG + Sbjct: 250 GVKDSRFVVSCDLGELGFICRAQGTN 275 >gi|293399592|ref|ZP_06643745.1| ribonuclease III [Neisseria gonorrhoeae F62] gi|291610161|gb|EFF39283.1| ribonuclease III [Neisseria gonorrhoeae F62] Length = 267 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 39 HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 96 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + +R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 156 VSFDADFNTAEKVVRHLFAER-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 214 Query: 183 PDHDPRFTVVVEISGLA 199 D F + ++ L Sbjct: 215 HADDSMFVISCDLGELG 231 >gi|54026155|ref|YP_120397.1| ribonuclease III [Nocardia farcinica IFM 10152] gi|81373706|sp|Q5YS08|RNC_NOCFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54017663|dbj|BAD59033.1| putative RNase III [Nocardia farcinica IFM 10152] Length = 240 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 104/204 (50%), Gaps = 10/204 (4%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S ++ + ERLEFLGD +LGL I+ L++ EGEL+ S+V Sbjct: 29 LLRLALTHRSYAYENGGLPTNERLEFLGDSVLGLSITERLYHEHPDKSEGELAKLRASVV 88 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVAG 136 + ++VAR L + + + SI AD +ESL+ A++L GI+VA Sbjct: 89 NMHALAEVARGLGEGGLGAHLLLGKGEELTGGRDKPSILADGMESLLGAVHLQHGIDVAR 148 Query: 137 TFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 V + + +R + G D KT LQE + P Y+++ +GPDHD FT Sbjct: 149 GVVLRLFADLLERGPRMGAG-LDWKTSLQELTAERGLGVPSYEIS-STGPDHDKEFTATT 206 Query: 194 EISGLAPAQGMDCSKRAAEQVAAA 217 I G A QG+ SK+ AEQ AA Sbjct: 207 VIGGRAYGQGVGRSKKEAEQKAAG 230 >gi|119489618|ref|ZP_01622378.1| Ribonuclease III [Lyngbya sp. PCC 8106] gi|119454530|gb|EAW35678.1| Ribonuclease III [Lyngbya sp. PCC 8106] Length = 233 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 106/214 (49%), Gaps = 13/214 (6%) Query: 25 KALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF-DSAKEGELSVRFNSLVS 80 +ALTH S + + ++ ERLEFLGD +LG L+ LL+ ++ + E +++ +LV Sbjct: 15 RALTHRSYVNEHPGDGKNNERLEFLGDAVLGFLVGELLYTYYPEELSEAKMTRLRAALVD 74 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + + A +L + +R+ KD ++ +D E+ I A YLD GIE F+ Sbjct: 75 EQQLGKFAAQLGIGEIMRLGKGAIKDGGYQNPALLSDTFEAYIGAYYLDAGIEKVREFIT 134 Query: 141 KYWKQRAL---------KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 + + A K+ + D+K Q+WA A+FG P+Y + +SGPDH F Sbjct: 135 PLFTKVANEILGMHTEEKNSEHLIDSKNRFQQWALAEFGENPKYFIIDQSGPDHAKEFIA 194 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 V + G K+ A++ AA LK+ GI Sbjct: 195 EVRVKDQVYGLGQGRRKQDAQKKAAEAALKKLGI 228 >gi|325131860|gb|EGC54560.1| ribonuclease III [Neisseria meningitidis M6190] gi|325137910|gb|EGC60485.1| ribonuclease III [Neisseria meningitidis ES14902] Length = 239 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFADR-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 186 Query: 183 PDHDPRFTVVVEISGLA 199 +D F V ++ L Sbjct: 187 HANDSMFVVSCDLGELG 203 >gi|256832889|ref|YP_003161616.1| ribonuclease III [Jonesia denitrificans DSM 20603] gi|256686420|gb|ACV09313.1| ribonuclease III [Jonesia denitrificans DSM 20603] Length = 241 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/200 (36%), Positives = 100/200 (50%), Gaps = 7/200 (3%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S +H + ERLEFLGD +LGL+ + LF EG+L+ + V Sbjct: 27 LLVLALTHRSFAHEAGGIPTNERLEFLGDAVLGLVSAEALFRGHPDRPEGDLARMRAATV 86 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S +Q AR L+L S+I + + + SI +D VE++I A+Y+ G+E A FV Sbjct: 87 SQRPLAQAARTLNLGSYILLGKGESRTGGADKDSILSDTVEAIIGAVYVTHGLETAREFV 146 Query: 140 DKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVT-PEYKVTFRSGPDHDPRFTVVVEIS 196 + + ++ D KT +QE A+ G P Y T + GPDH FT V I Sbjct: 147 HRLLGETMREAATMGAGLDWKTAIQELC-AQLGYPQPTYDFTSQ-GPDHARVFTSTVVIE 204 Query: 197 GLAPAQGMDCSKRAAEQVAA 216 G SK+ AEQ AA Sbjct: 205 DRRYGSGEGTSKKLAEQQAA 224 >gi|71894685|ref|YP_278793.1| dsRNA-specific ribonuclease III [Mycoplasma synoviae 53] gi|90101629|sp|Q4A589|RNC_MYCS5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71851473|gb|AAZ44082.1| dsRNA-specific ribonuclease III [Mycoplasma synoviae 53] Length = 231 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/216 (32%), Positives = 111/216 (51%), Gaps = 20/216 (9%) Query: 17 FANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 + N L +A TH + S + S YERLEFLGD ++G LIS F S + GELS Sbjct: 23 YKNIDLFIEATTHKTYSKVNKNSKDYERLEFLGDSLVGFLISDYCVREFSSLEPGELSRL 82 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 + LV ++A++L + I+ ++ +++ +DVVE+LIAA+YLD G++ Sbjct: 83 RSKLVDKLALFKIAQKLKVEQIIKTGPKKARNEVLSSSNVLSDVVEALIAAIYLDQGMQS 142 Query: 135 AGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY-------KVTFRSGPDHD 186 A F+ ++ + A K+ K +D K+ELQE+ T +Y K +F S H Sbjct: 143 AKDFIKSHFYEIANKAQNKPNKDPKSELQEYFQTISAETVKYETIEIPNKRSFESKAWH- 201 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + +I G G+ SK+ AE+ AAA L + Sbjct: 202 -----LNKIYGT----GVGLSKKDAEKNAAANALSK 228 >gi|323142424|ref|ZP_08077250.1| ribonuclease III [Phascolarctobacterium sp. YIT 12067] gi|322413117|gb|EFY04010.1| ribonuclease III [Phascolarctobacterium sp. YIT 12067] Length = 239 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 106/216 (49%), Gaps = 9/216 (4%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLLFNHFDSAK 67 +G + LL+ ALTH+S +H ++ ER+EFLGD +L +++ST ++ +F Sbjct: 16 LGIHMHDLELLDMALTHTSYAHEAKQYPKPHHNERIEFLGDSVLSVIVSTYMYKNFPDLA 75 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+L+ LV + + A+++ L ++++ SI AD ES++ A+Y Sbjct: 76 EGQLTKLRAYLVCEGSLYEYAKKIHLGDYLQLGKGEELSGGRERPSILADAFESVLGAIY 135 Query: 128 LDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LD G EV ++ + + G F D KT LQE+ Y + +GP+ Sbjct: 136 LDQGFEVVQAYLLGMMQSEIDFICRHGIF-NDYKTRLQEYLQRDGDADIHYVLLGSTGPE 194 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H+ FT V + +G +K+ +EQ AA + L Sbjct: 195 HNKVFTSQVMLGNTVIGEGSGRTKKDSEQHAAKQAL 230 >gi|268598421|ref|ZP_06132588.1| ribonuclease III [Neisseria gonorrhoeae MS11] gi|291044414|ref|ZP_06570123.1| ribonuclease III [Neisseria gonorrhoeae DGI2] gi|268582552|gb|EEZ47228.1| ribonuclease III [Neisseria gonorrhoeae MS11] gi|291011308|gb|EFE03304.1| ribonuclease III [Neisseria gonorrhoeae DGI2] Length = 267 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 39 HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 96 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + +R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 156 VSFDADFNTAEKVVRHLFAER-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 214 Query: 183 PDHDPRFTVVVEISGLA 199 D F + ++ L Sbjct: 215 HADDSMFVISCDLGELG 231 >gi|311742943|ref|ZP_07716751.1| ribonuclease III [Aeromicrobium marinum DSM 15272] gi|311313623|gb|EFQ83532.1| ribonuclease III [Aeromicrobium marinum DSM 15272] Length = 232 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 106/218 (48%), Gaps = 12/218 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58 M ALR +G + LL ALTH S ++ + + ERLEFLGD +LGL+++ Sbjct: 1 MDALR-----DVLGVPDLDPELLRHALTHRSYAYENGQIPNNERLEFLGDSVLGLVVTDS 55 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF EG+L+ ++VSA+ + VAR L + +R+ SI +D Sbjct: 56 LFRAHPDLPEGQLAKLRAAVVSAKALAVVARTLGIGDVVRLGRGEETTGGRDKASILSDT 115 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEW-AHAKFGVTPEY 175 VE++I A++L GIE A V + + + D KT LQE AH GV P Y Sbjct: 116 VEAVIGAVFLQFGIERAAEVVHRVFDPVMADAASLGAALDWKTSLQEMAAHHGLGV-PRY 174 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + +GPDH FT V + A G SK+ AEQ Sbjct: 175 HLEG-TGPDHARSFTAEVHLGERVFAGGAGRSKKEAEQ 211 >gi|57866684|ref|YP_188382.1| ribonuclease III [Staphylococcus epidermidis RP62A] gi|242242516|ref|ZP_04796961.1| ribonuclease III [Staphylococcus epidermidis W23144] gi|73917583|sp|Q5HPV8|RNC_STAEQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|57637342|gb|AAW54130.1| ribonuclease III [Staphylococcus epidermidis RP62A] gi|242234024|gb|EES36336.1| ribonuclease III [Staphylococcus epidermidis W23144] gi|319401475|gb|EFV89685.1| ribonuclease III [Staphylococcus epidermidis FRI909] Length = 245 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 11/225 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 +++ K +G F N L ++A +HSS + + E ERLEFLGD +L L +S LF Sbjct: 16 KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG L+ ++V + A ++ L I + K S+ +D E Sbjct: 76 DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + + ALYLD G++ TF +K Y + L D KT+ QE+ H++ Y+ Sbjct: 136 AFVGALYLDQGLDTVWTFAEKVIFPYVEDDELVG---VVDFKTQFQEYVHSQNKGDVTYQ 192 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + GP H FT V + A A+G +K+ +EQ AA + K Sbjct: 193 LIKEEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYK 237 >gi|29748104|gb|AAH50057.1| Rnasen protein [Mus musculus] Length = 705 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 437 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 496 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F E L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 497 FPDHHERHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 555 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174 IAALY+D +E TF++ + R LK + D K++LQ+ K P Sbjct: 556 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 614 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK GP H +TV V G G S + AE AA + L++ Sbjct: 615 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 662 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 289 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 343 Query: 88 ARELDLASFIRVSSDLRKDVCSF--MTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+CS + A+ E+LI A+YL+G +E A Sbjct: 344 AKKLELDRFMLYAHG--PDLCSESDLRHAMANCFEALIGAVYLEGSLEEA 391 >gi|5579373|gb|AAD45518.1|AF160248_1 ribonuclease [Caenorhabditis elegans] Length = 860 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 15/218 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+R+G F N LL KA T +I ++ + +RLE+LGD +L L++S L+ F Sbjct: 607 FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 666 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG +S+ SLVS +T + V +L F+ + + + +AD+VE+ I Sbjct: 667 PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFV-IKAPYK--TPELKLKDKADLVEAFI 723 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVT------PE 174 ALY+D GIE F+ + R ++S K+ DAK+ LQ+W A + PE Sbjct: 724 GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKW-NDAKSHLQQWCLAMRDPSSSEPDMPE 782 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 Y+V GP ++ F + V G A + + AE Sbjct: 783 YRVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAE 820 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 6/113 (5%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLE+LGD ++ L++S L+ EG L+ +LV + +A+ + ++ S Sbjct: 465 ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYS 524 Query: 101 --SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK--YWKQRALK 149 +DL +V F ++ A+ E+++AA+YLDGG+ K Y Q LK Sbjct: 525 HGADL-INVAEFKHAL-ANAFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLK 575 >gi|7499923|pir||T21419 hypothetical protein F26E4.13 - Caenorhabditis elegans Length = 412 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 15/218 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+R+G F N LL KA T +I ++ + +RLE+LGD +L L++S L+ F Sbjct: 162 FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 221 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG +S+ SLVS +T + V +L F+ + + + +AD+VE+ I Sbjct: 222 PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFV-IKAPYKTPELKLKD--KADLVEAFI 278 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVT------PE 174 ALY+D GIE F+ + R ++S K+ DAK+ LQ+W A + PE Sbjct: 279 GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKW-NDAKSHLQQWCLAMRDPSSSEPDMPE 337 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 Y+V GP ++ F + V G A + + AE Sbjct: 338 YRVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAE 375 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 6/113 (5%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLE+LGD ++ L++S L+ EG L+ +LV + +A+ + ++ S Sbjct: 20 ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYS 79 Query: 101 --SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK--YWKQRALK 149 +DL +V F ++ A+ E+++AA+YLDGG+ K Y Q LK Sbjct: 80 HGADL-INVAEFKHAL-ANAFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLK 130 >gi|312140459|ref|YP_004007795.1| ribonuclease iii [Rhodococcus equi 103S] gi|325675924|ref|ZP_08155607.1| ribonuclease III [Rhodococcus equi ATCC 33707] gi|311889798|emb|CBH49115.1| ribonuclease III [Rhodococcus equi 103S] gi|325553162|gb|EGD22841.1| ribonuclease III [Rhodococcus equi ATCC 33707] Length = 256 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 103/206 (50%), Gaps = 14/206 (6%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S + H + ERLEFLGD +LGL I+ L+ EGEL+ S+V Sbjct: 32 LLTLALTHRSYAYEHGGLPTNERLEFLGDSVLGLTITERLYTAHPEKSEGELAKIRASIV 91 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVA- 135 + ++VAR L + + + SI AD +ESL+ A++L+ GI+ A Sbjct: 92 NMHALAEVARGLGPGGLGAHLLLGKGEEMTGGRDKPSILADGMESLLGAIHLEHGIDTAR 151 Query: 136 ----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 F D + L +G D KT LQE + P Y++T +GPDHD FT Sbjct: 152 RVVLDLFADLLSRAPKLGAG---LDWKTSLQELTAERGIGVPSYEIT-ATGPDHDKEFTA 207 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAA 217 V + G A G+ SK+ AEQ AA+ Sbjct: 208 TVVVGGDAFGVGVGRSKKEAEQKAAS 233 >gi|24637290|gb|AAN63637.1|AF440766_1 ribonuclease III [Mus musculus] Length = 541 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 113/233 (48%), Gaps = 22/233 (9%) Query: 5 RYSTLEKRIGYAFANRSLLEKALT-------HSSISHSYQESYERLEFLGDRILGLLIST 57 + + E+ IG F + LL +A T H ++ H+ +R+EFLGD I+ L+ + Sbjct: 273 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHN-----QRMEFLGDSIMQLVATE 327 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF HF EG L++ +SLV+ T ++VA EL + + +++D K + T AD Sbjct: 328 YLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLAD 386 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWA-----HAKF 169 + ES IAALY+D +E TF++ + R LK + D K++LQ+ K Sbjct: 387 LWESFIAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKE 445 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P YK GP H + V V G G S + AE AA + L++ Sbjct: 446 PDIPLYKTLQTVGPSHARTYPVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 498 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 125 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAMVQNQHLAML 179 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 180 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 227 >gi|167755900|ref|ZP_02428027.1| hypothetical protein CLORAM_01417 [Clostridium ramosum DSM 1402] gi|237734864|ref|ZP_04565345.1| ribonuclease III [Mollicutes bacterium D7] gi|167704839|gb|EDS19418.1| hypothetical protein CLORAM_01417 [Clostridium ramosum DSM 1402] gi|229382192|gb|EEO32283.1| ribonuclease III [Coprobacillus sp. D7] Length = 226 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 4/216 (1%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +++ + N + ++A TH S ++ + YERLEFLGD +L +S +F+ + Sbjct: 8 QKMEIPYQNIEIFKEAFTHPSYANENKMKNHDYERLEFLGDAVLQYHVSRHIFDLYPELP 67 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ LV E+ ++ ARELDL I + + + S+ AD+ E+ + A+ Sbjct: 68 EGRLTKLRAKLVREESLARFARELDLGPLIYLGAGELNNGGRDRDSVLADIFEAFMGAIC 127 Query: 128 LDGGIEVAGTFVD-KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G E +D +K + D KT+LQE A T Y + SGP ++ Sbjct: 128 HDCGPEYVEKMLDITIYKHVEDVNYDEITDFKTKLQELIQADQRKTVTYDLISSSGPSNN 187 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F + V++ + G+ SK+ AEQ AA + L + Sbjct: 188 PVFEMAVKMDEMVLGVGVGSSKKRAEQQAAKDALNK 223 >gi|218291547|ref|ZP_03495421.1| Ribonuclease III [Alicyclobacillus acidocaldarius LAA1] gi|258511329|ref|YP_003184763.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218238642|gb|EED05867.1| Ribonuclease III [Alicyclobacillus acidocaldarius LAA1] gi|257478055|gb|ACV58374.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 241 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 5/205 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L+ + F + +LL++A TH+S + ++ E ERLEFLGD +L L++S L+ + Sbjct: 8 LQGLLNLQFNDVNLLKQAFTHASYRNEHRKLHVEDNERLEFLGDAVLELVVSDFLYRTYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ ++V + + A+ L +IR+ + ++ ADV E+ + Sbjct: 68 KMPEGELTRMRAAIVCEASLVRFAKRLSFDQYIRLGRGEERSGGRSRPALLADVFEAFLG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 ALYLD G+E FV + L D KT LQE + Y + GP Sbjct: 128 ALYLDQGLEAVRQFVHTHMVP-YLPDVSAGLDYKTALQELVQQRHQTPVRYVIVEERGPA 186 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209 H F V VE+ G G+ SK+ Sbjct: 187 HAREFVVQVELGGEVRGVGIGRSKK 211 >gi|317420155|emb|CBN82191.1| Ribonuclease 3 [Dicentrarchus labrax] Length = 1569 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 104/208 (50%), Gaps = 22/208 (10%) Query: 5 RYSTLEKRIGYAFANRSLLEKALT-------HSSISHSYQESYERLEFLGDRILGLLIST 57 + ++ E IG F + LL +A T H ++ H+ +R+EFLGD I+ L+ + Sbjct: 1359 KLTSFEDSIGVLFTHVRLLARAFTLRTVGFNHLTLGHN-----QRMEFLGDSIMQLVATE 1413 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF HF EG L++ +SLV+ T ++VA EL + F +++D K + T AD Sbjct: 1414 YLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQDFA-ITNDKTKRPVALRTKTLAD 1472 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWA-----HAKF 169 ++ES IAALY+D +E TF++ + R LK + D K++LQ+ K Sbjct: 1473 LLESFIAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKE 1531 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISG 197 P YK GP H +TV V G Sbjct: 1532 PDIPLYKTLQTVGPSHARTYTVAVYFKG 1559 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 71/186 (38%), Gaps = 59/186 (31%) Query: 9 LEKRIGYAFANRSLLEKALTHSS------------------------------ISHSYQ- 37 L+K IGY F R LL+ A+TH S + H Y Sbjct: 939 LDKLIGYVFKERCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMYMR 998 Query: 38 ------------------------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 ERLEFLGD ++ L S L+ F S +EG L+ Sbjct: 999 KKGINTLINIMSRLGQDDPSPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLAT 1058 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGG 131 ++V + + +A++L+L F+ + D+C S + A+ E+LI L Sbjct: 1059 YRTAIVQNQHLAMLAKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIEHFLLTRQ 1116 Query: 132 IEVAGT 137 ++A T Sbjct: 1117 TQIAHT 1122 >gi|300858757|ref|YP_003783740.1| ribonuclease III [Corynebacterium pseudotuberculosis FRC41] gi|300686211|gb|ADK29133.1| ribonuclease III [Corynebacterium pseudotuberculosis FRC41] gi|302206463|gb|ADL10805.1| Ribonuclease III [Corynebacterium pseudotuberculosis C231] gi|302331018|gb|ADL21212.1| Ribonuclease III [Corynebacterium pseudotuberculosis 1002] gi|308276705|gb|ADO26604.1| Ribonuclease III [Corynebacterium pseudotuberculosis I19] Length = 249 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 111/218 (50%), Gaps = 8/218 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + Y++L +G R LL ALTH S ++ + ERLEFLGD +LGL +++ L+ Sbjct: 21 INYASLIDSLGIDIP-RDLLMLALTHRSFANENGSLPNNERLEFLGDAVLGLSVASKLYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + S E ++S S+VS + +ARE+ L SFI + SI AD E+ Sbjct: 80 QYPSRAESDISKMRASIVSRYGLADIAREIKLGSFILLGKGELMTNGRDKESILADTTEA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YL G EVA V + + QR + + +D KT LQE A + P Y + Sbjct: 140 LLGAIYLAHGFEVARNTVLRLF-QRKIDTASAVGMHQDWKTTLQERAAERKLPIPVYTAS 198 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +GP+H FT VV + +G +K+ AEQ AA Sbjct: 199 -STGPEHSQIFTAVVTVGTTVLGEGTGPNKKLAEQAAA 235 >gi|160915457|ref|ZP_02077668.1| hypothetical protein EUBDOL_01465 [Eubacterium dolichum DSM 3991] gi|158432577|gb|EDP10866.1| hypothetical protein EUBDOL_01465 [Eubacterium dolichum DSM 3991] Length = 227 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 109/217 (50%), Gaps = 6/217 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHFDSAK 67 K+ G N+ + +ALTHSS + ++ S ERLEF+GD +L L + LF+ + Sbjct: 9 KQRGIQIENKERMVEALTHSSYVNEHKASKHDNERLEFMGDAVLQLWSTRKLFHLTPALS 68 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+++ LV E + R L ++ + K S+ AD+ E+++ A+Y Sbjct: 69 EGQMTTLRAQLVCEEALAAYNRTLGWGKYLLLGVGEEKTGGRNRDSLLADMFEAVLGAIY 128 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD G+E ++ A+ K D KT+LQE+ A Y++ SGP + Sbjct: 129 LDQGMEAVDIILESVLTP-AITQPKSESVIDYKTKLQEYIQADTRKNVHYELVSTSGPSN 187 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F V+V++ + +G+ SK+ AEQ+AA + ++ Sbjct: 188 APIFEVIVKLEDIIMGKGVGNSKKRAEQMAAKDAFEK 224 >gi|121634484|ref|YP_974729.1| ribonuclease III [Neisseria meningitidis FAM18] gi|120866190|emb|CAM09930.1| putative ribonuclease III [Neisseria meningitidis FAM18] Length = 267 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 39 HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 96 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 156 VSFDADFNTAEKVVRHLFADR-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 214 Query: 183 PDHDPRFTVVVEISGLA 199 +D F V ++ L Sbjct: 215 HANDSMFVVSCDLGELG 231 >gi|284045141|ref|YP_003395481.1| ribonuclease III [Conexibacter woesei DSM 14684] gi|283949362|gb|ADB52106.1| ribonuclease III [Conexibacter woesei DSM 14684] Length = 223 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 100/206 (48%), Gaps = 7/206 (3%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK--EGELSVRFNSLVSAE 82 + THSS + +SYERL FLGD +LGL ++T L+ ++ + G L+ VS Sbjct: 18 QVFTHSSWTDRRADSYERLAFLGDSVLGLAVTTHLYPRLEADRYGAGRLTKIRAQAVSGR 77 Query: 83 TCSQVARELDLASFIRVSSD----LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 +C +VA L + +R ++ D + A V+E++I A+YLD G E Sbjct: 78 SCMEVAERLGVPERLRAAAPQGVGQNADALVRTERVLASVIEAVIGAVYLDNGYETTAEA 137 Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 V + ++ + + D K+ LQE A+ G Y V GP HD F VV E++G Sbjct: 138 VVEAFEPEIETALEHPVDFKSALQERL-ARRGDVVAYSVASEEGPPHDRVFEVVAEVAGN 196 Query: 199 APAQGMDCSKRAAEQVAAAEVLKREG 224 G SK+ AEQ AA L+ G Sbjct: 197 QVGSGRGRSKKDAEQEAARTALEAMG 222 >gi|319937586|ref|ZP_08011991.1| ribonuclease III [Coprobacillus sp. 29_1] gi|319807426|gb|EFW04035.1| ribonuclease III [Coprobacillus sp. 29_1] Length = 232 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 102/210 (48%), Gaps = 4/210 (1%) Query: 17 FANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F SL ++A TH+S + H Y + YERLEF+GD +L L +S LF+ F EG L+ Sbjct: 14 FQKLSLYKEAFTHASYANEAHHYNKDYERLEFMGDAVLQLYVSDFLFHLFPDVPEGTLTT 73 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGI 132 + LV E+ ++ ++EL L + + K S+ A++ ES I ALYLD G Sbjct: 74 LRSKLVREESLARFSKELGLGELLFLGVGEEKSGGRERESVLANIFESFIGALYLDCGKD 133 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 EV ++ D KT LQE A T Y++ SGP + P F V Sbjct: 134 EVIKILEQTIFQHVNDLDYDDITDYKTTLQELIQADQRKTVTYELLETSGPSNAPEFKVA 193 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + + G SK+ AEQ AA + L + Sbjct: 194 VIMDEMRLGVGKGTSKKRAEQQAAKDALNK 223 >gi|163941587|ref|YP_001646471.1| ribonuclease III [Bacillus weihenstephanensis KBAB4] gi|229013032|ref|ZP_04170197.1| Ribonuclease 3 [Bacillus mycoides DSM 2048] gi|229134657|ref|ZP_04263466.1| Ribonuclease 3 [Bacillus cereus BDRD-ST196] gi|229564349|sp|A9VT87|RNC_BACWK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|163863784|gb|ABY44843.1| Ribonuclease III [Bacillus weihenstephanensis KBAB4] gi|228648703|gb|EEL04729.1| Ribonuclease 3 [Bacillus cereus BDRD-ST196] gi|228748286|gb|EEL98146.1| Ribonuclease 3 [Bacillus mycoides DSM 2048] Length = 245 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A E+ S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G+E ++ + + + G F D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGYLKEVVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQ 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++ A G SK+ AEQ AAAE LK+ Sbjct: 198 EKGPAHNREFVSRVTLNNEALGLGSGKSKKEAEQQAAAEALKK 240 >gi|226313209|ref|YP_002773103.1| ribonuclease III [Brevibacillus brevis NBRC 100599] gi|226096157|dbj|BAH44599.1| ribonuclease III [Brevibacillus brevis NBRC 100599] Length = 246 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 7/213 (3%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 + ++ L++ IG+ F + S+L +A THSS + + ERLEFLGD +L L +S Sbjct: 18 VMNFAQLQETIGFRFRDESVLRQAFTHSSYVNEQRGKRISDNERLEFLGDAVLELTVSQF 77 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ F EGE++ ++V + + A L+ + + ++ ADV Sbjct: 78 LYKTFPKMSEGEMTKLRAAIVCEPSLVKFAELLNFGDLVLLGKGEELTGGRQRPALLADV 137 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYK 176 E+ + ALYLD G+E +F++KY R + G+F + D K++LQE+ Y+ Sbjct: 138 FEAFVGALYLDQGLEAVFSFMEKYVYPR-IDKGEFAQVTDFKSQLQEFVQQDNLGDIHYR 196 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + GP H+ F V ++ + G SK+ Sbjct: 197 IVEEKGPAHNREFVSEVLLNNRSLGIGSGRSKK 229 >gi|300361933|ref|ZP_07058110.1| ribonuclease III [Lactobacillus gasseri JV-V03] gi|300354552|gb|EFJ70423.1| ribonuclease III [Lactobacillus gasseri JV-V03] Length = 226 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 102/207 (49%), Gaps = 7/207 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L+++ G F N +LLE A THSS + H ++ YE+LEFLGD +L L +S L+ HF Sbjct: 8 NNLKEKYGIKFNNENLLEDAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSDYLYRHFP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ +++V E S+ A E + I + K ++ DV E+ Sbjct: 68 RLNEGELTRMRSNIVRTEGFSEFAIECGFPAEINLGKGEEKAGARKRKTLLEDVFEAFNG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL+LD G+ F+ + G F RD KTELQE V EY+V + Sbjct: 128 ALFLDQGMPAVQHFL-HLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQVI--AE 184 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 + P F V + ++ ++G +K+ Sbjct: 185 DESKPYFKVQLLVNDKKISEGQGRNKK 211 >gi|229061452|ref|ZP_04198797.1| Ribonuclease 3 [Bacillus cereus AH603] gi|228717875|gb|EEL69523.1| Ribonuclease 3 [Bacillus cereus AH603] Length = 245 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A E+ S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G+E ++ + + + G F D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGYLKEVVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++ A G SK+ AEQ AAAE LK+ Sbjct: 198 EKGPAHNREFVSRVTLNNEALGLGSGKSKKEAEQQAAAEALKK 240 >gi|210622528|ref|ZP_03293221.1| hypothetical protein CLOHIR_01169 [Clostridium hiranonis DSM 13275] gi|210154163|gb|EEA85169.1| hypothetical protein CLOHIR_01169 [Clostridium hiranonis DSM 13275] Length = 204 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 87/171 (50%), Gaps = 4/171 (2%) Query: 29 HSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86 HSS S+ ++ ER+EFLGD +LGL+IS +F EGEL+ ++V + S+ Sbjct: 1 HSSYSNENKKFKYNERMEFLGDSVLGLVISDHIFKKETGVPEGELTKLRANIVCEGSLSE 60 Query: 87 VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146 A+ + L +I + SI AD E++IAA+YLDGGIE A F+ Sbjct: 61 AAKNIRLGDYILLGRGEEATGGRERKSILADAFEAVIAAIYLDGGIESASKFILSNLSDI 120 Query: 147 ALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 S GK RD KT+LQE YK+ GPDH+ F ++V + Sbjct: 121 IKDSIDGKIFRDYKTQLQEEIQKNGSSNIWYKLLDEDGPDHNKTFIMMVGV 171 >gi|218767809|ref|YP_002342321.1| ribonuclease III [Neisseria meningitidis Z2491] gi|22654074|sp|Q9JVD3|RNC_NEIMA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|121051817|emb|CAM08123.1| putative ribonuclease III [Neisseria meningitidis Z2491] Length = 239 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + +R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFAER-VRRVDFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 186 Query: 183 PDHDPRFTVVVEISGLA 199 +D F + ++ L Sbjct: 187 HANDSMFVISCDLGELG 203 >gi|163840519|ref|YP_001624924.1| ribonuclease III [Renibacterium salmoninarum ATCC 33209] gi|162953995|gb|ABY23510.1| ribonuclease III [Renibacterium salmoninarum ATCC 33209] Length = 273 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/214 (34%), Positives = 104/214 (48%), Gaps = 6/214 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L KR+G + L ALTH S ++ + ERLEFLGD +LGL ++ L+ Sbjct: 25 LLKRLGVDI-DAGTLRLALTHRSFAYENGGIPTNERLEFLGDSVLGLSVTDALYRDNPGL 83 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ R +++VS + VAREL + FI + SI AD +E+L A Sbjct: 84 AEGELAKRRSAVVSTRALAGVARELGVGEFILLGQGELLTDGKNKASILADTMEALFGAA 143 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 Y+ IE A V + +G F D KT +QE A + Y+VT + GPD Sbjct: 144 YICNDIETARQMVMRLVGPLLADAGNFGAATDWKTNIQEHAANRQLGPVRYEVTGQ-GPD 202 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 H + ++ I G + G SK+ AEQ AAA Sbjct: 203 HARTYQALLWIGGTSYQSGRGHSKKEAEQDAAAN 236 >gi|78183763|ref|YP_376197.1| ribonuclease III [Synechococcus sp. CC9902] gi|78168057|gb|ABB25154.1| RNAse III [Synechococcus sp. CC9902] Length = 249 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 SL+++AL H S S +++ERLEFLGD +L L + + + + G S LVS Sbjct: 28 SLVDEALIHVSAGRS--KNFERLEFLGDAVLRLAATEFIDQQYPNLPVGRCSSLRAQLVS 85 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG--IEVAGTF 138 +Q+ +L L SF+ + D + T +QAD E+LI A+Y G +E + Sbjct: 86 DRWLAQLGEQLQLESFLVLGPKALGDAAAQAT-LQADATEALIGAIYSGSGNNLEPIHHW 144 Query: 139 VDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEI 195 + +W+Q + + + KT LQEW+ A+ P Y T +S DP RF VE+ Sbjct: 145 LTPHWQQTTADVLARPHLFNGKTMLQEWSQAEGLGLPNYTTTEQSSRHGDPERFKSRVEV 204 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 A G S++ AEQ AA E ++R Sbjct: 205 GSRLSANGFGRSRKEAEQNAATEAVQR 231 >gi|17506883|ref|NP_492599.1| Ortholog of Drosophila DRoSHa gene family member (drsh-1) [Caenorhabditis elegans] gi|20141625|sp|O01326|RNC_CAEEL RecName: Full=Ribonuclease 3; AltName: Full=Protein drosha; AltName: Full=Ribonuclease III; Short=RNase III gi|15718161|emb|CAB03006.3| C. elegans protein F26E4.10a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 1086 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 15/218 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+R+G F N LL KA T +I ++ + +RLE+LGD +L L++S L+ F Sbjct: 833 FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 892 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG +S+ SLVS +T + V +L F+ + + + +AD+VE+ I Sbjct: 893 PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFV-IKAPYK--TPELKLKDKADLVEAFI 949 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVT------PE 174 ALY+D GIE F+ + R ++S K+ DAK+ LQ+W A + PE Sbjct: 950 GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKW-NDAKSHLQQWCLAMRDPSSSEPDMPE 1008 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 Y+V GP ++ F + V G A + + AE Sbjct: 1009 YRVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAE 1046 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 6/113 (5%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLE+LGD ++ L++S L+ EG L+ +LV + +A+ + ++ S Sbjct: 691 ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYS 750 Query: 101 --SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK--YWKQRALK 149 +DL +V F ++ A+ E+++AA+YLDGG+ K Y Q LK Sbjct: 751 HGADL-INVAEFKHAL-ANAFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLK 801 >gi|27467826|ref|NP_764463.1| RNase III [Staphylococcus epidermidis ATCC 12228] gi|251810663|ref|ZP_04825136.1| RNase III [Staphylococcus epidermidis BCM-HMP0060] gi|282876335|ref|ZP_06285202.1| ribonuclease III [Staphylococcus epidermidis SK135] gi|32129970|sp|Q8CPI1|RNC_STAES RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|27315371|gb|AAO04505.1|AE016747_2 RNase III [Staphylococcus epidermidis ATCC 12228] gi|251805823|gb|EES58480.1| RNase III [Staphylococcus epidermidis BCM-HMP0060] gi|281295360|gb|EFA87887.1| ribonuclease III [Staphylococcus epidermidis SK135] gi|329736334|gb|EGG72606.1| ribonuclease III [Staphylococcus epidermidis VCU028] Length = 245 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 11/225 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 +++ K +G F N L ++A +HSS + + E ERLEFLGD +L L +S LF Sbjct: 16 KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG L+ ++V + A ++ L I + K S+ +D E Sbjct: 76 DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + + ALYLD G++ TF +K Y + L D KT+ QE+ H++ Y+ Sbjct: 136 AFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVG---VVDFKTQFQEYVHSQNKGDVTYQ 192 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + GP H FT V + A A+G +K+ +EQ AA + K Sbjct: 193 LIKEEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYK 237 >gi|193202651|ref|NP_001122460.1| Ortholog of Drosophila DRoSHa gene family member (drsh-1) [Caenorhabditis elegans] gi|159572246|emb|CAP19331.1| C. elegans protein F26E4.10b, confirmed by transcript evidence [Caenorhabditis elegans] Length = 1083 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 15/218 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+R+G F N LL KA T +I ++ + +RLE+LGD +L L++S L+ F Sbjct: 833 FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 892 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG +S+ SLVS +T + V +L F+ + + + +AD+VE+ I Sbjct: 893 PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFV-IKAPYK--TPELKLKDKADLVEAFI 949 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVT------PE 174 ALY+D GIE F+ + R ++S K+ DAK+ LQ+W A + PE Sbjct: 950 GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKW-NDAKSHLQQWCLAMRDPSSSEPDMPE 1008 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 Y+V GP ++ F + V G A + + AE Sbjct: 1009 YRVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAE 1046 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 6/113 (5%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLE+LGD ++ L++S L+ EG L+ +LV + +A+ + ++ S Sbjct: 691 ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYS 750 Query: 101 --SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK--YWKQRALK 149 +DL +V F ++ A+ E+++AA+YLDGG+ K Y Q LK Sbjct: 751 HGADL-INVAEFKHAL-ANAFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLK 801 >gi|307069613|ref|YP_003878090.1| ribonuclease III [Candidatus Zinderia insecticola CARI] gi|306482873|gb|ADM89744.1| ribonuclease III [Candidatus Zinderia insecticola CARI] Length = 221 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 110/220 (50%), Gaps = 14/220 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK + Y F N+SLL ALTHSS S+ + E+LEFLGD IL I+++LFN F + E Sbjct: 4 LEKILRYNFNNKSLLFLALTHSSYSNI---NNEKLEFLGDSILNTCITSILFNKFKNESE 60 Query: 69 GELSVRFNS-LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G LS +F S LV E ++++++L +F+ + + K+ + SI + +E+L A+Y Sbjct: 61 GFLS-KFRSYLVRREKLYNISKKINLYNFLFLGNSEIKNSGNLKISILSSTLEALFGAIY 119 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFR-----RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +D + K +K F +D KT LQE P+Y++ Sbjct: 120 IDSDFNTINNIIYKLYK---FDINNFNIKYNIKDFKTLLQENLQKMKYFLPKYEIYKIYK 176 Query: 183 PDHDPRFTV-VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + F + + + GM + AEQ+AA +LK Sbjct: 177 LKNFQIFKIKCIFVEKNIITYGMAEKIKVAEQIAARFMLK 216 >gi|116629437|ref|YP_814609.1| dsRNA-specific ribonuclease [Lactobacillus gasseri ATCC 33323] gi|238852587|ref|ZP_04642997.1| ribonuclease III [Lactobacillus gasseri 202-4] gi|282850853|ref|ZP_06260227.1| ribonuclease III [Lactobacillus gasseri 224-1] gi|311110915|ref|ZP_07712312.1| ribonuclease III [Lactobacillus gasseri MV-22] gi|116095019|gb|ABJ60171.1| RNAse III [Lactobacillus gasseri ATCC 33323] gi|238834733|gb|EEQ26960.1| ribonuclease III [Lactobacillus gasseri 202-4] gi|282557805|gb|EFB63393.1| ribonuclease III [Lactobacillus gasseri 224-1] gi|311066069|gb|EFQ46409.1| ribonuclease III [Lactobacillus gasseri MV-22] Length = 226 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 101/206 (49%), Gaps = 7/206 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L+++ G F N +LLE A THSS + H ++ YE+LEFLGD +L L +S L+ HF Sbjct: 9 NLKEKYGIKFNNENLLEDAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSDYLYRHFPR 68 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL+ +++V E S+ A E + I + K ++ DV E+ A Sbjct: 69 LNEGELTRMRSNIVRTEGFSEFAIECGFPAEINLGKGEEKAGARKRKTLLEDVFEAFNGA 128 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 L+LD G+ F+ + G F RD KTELQE V EY+V + Sbjct: 129 LFLDQGMPAVQHFL-HLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQVI--AED 185 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 + P F V + ++ ++G +K+ Sbjct: 186 ESKPSFKVQLLVNDKKISEGQGRNKK 211 >gi|271969197|ref|YP_003343393.1| ribonuclease III [Streptosporangium roseum DSM 43021] gi|270512372|gb|ACZ90650.1| Ribonuclease III [Streptosporangium roseum DSM 43021] Length = 243 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 5/177 (2%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 ++LE+A+TH S ++ + ERLEFLGD +LGL+++ L+ + EG+L+ ++ Sbjct: 28 AILERAMTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRNHPDLPEGQLAKLRAAV 87 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 V+ + VAR L L F+R+ +SI AD +E+LI ++Y++ G++ A Sbjct: 88 VNMRALADVARTLGLGRFLRLGRGEEGTGGRDKSSILADTLEALIGSVYVNRGLDEAFRV 147 Query: 139 VDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 V + +S D KT LQE ++ PEY V SGPDH FT VV Sbjct: 148 VHLLFDPLITRSASLGAGLDWKTSLQELTASEALGVPEYHVE-ESGPDHAKSFTAVV 203 >gi|329724352|gb|EGG60864.1| ribonuclease III [Staphylococcus epidermidis VCU144] Length = 249 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 11/225 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 +++ K +G F N L ++A +HSS + + E ERLEFLGD +L L +S LF Sbjct: 16 KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG L+ ++V + A ++ L I + K S+ +D E Sbjct: 76 DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + + ALYLD G++ TF +K Y + L D KT+ QE+ H++ Y+ Sbjct: 136 AFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVG---VVDFKTQFQEYVHSQNKGDVTYQ 192 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + GP H FT V + A A+G +K+ +EQ AA + K Sbjct: 193 LIKEEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYK 237 >gi|293366802|ref|ZP_06613478.1| ribonuclease III [Staphylococcus epidermidis M23864:W2(grey)] gi|291319103|gb|EFE59473.1| ribonuclease III [Staphylococcus epidermidis M23864:W2(grey)] gi|329736553|gb|EGG72819.1| ribonuclease III [Staphylococcus epidermidis VCU045] Length = 245 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 11/225 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 +++ K +G F N L ++A +HSS + + E ERLEFLGD +L L +S LF Sbjct: 16 KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG L+ ++V + A ++ L I + K S+ +D E Sbjct: 76 DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + + ALYLD G++ TF +K Y + L D KT+ QE+ H++ Y+ Sbjct: 136 AFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVG---VVDFKTQFQEYVHSQNKGDVTYQ 192 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + GP H FT V + A A+G +K+ +EQ AA + K Sbjct: 193 LIKEEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYK 237 >gi|15676584|ref|NP_273728.1| ribonuclease III [Neisseria meningitidis MC58] gi|22654075|sp|Q9K0C8|RNC_NEIMB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|7225914|gb|AAF41104.1| ribonuclease III [Neisseria meningitidis MC58] gi|261392941|emb|CAX50526.1| ribonuclease III (RNase III) [Neisseria meningitidis 8013] gi|316983658|gb|EFV62639.1| ribonuclease III [Neisseria meningitidis H44/76] gi|325139865|gb|EGC62396.1| ribonuclease III [Neisseria meningitidis CU385] gi|325200628|gb|ADY96083.1| ribonuclease III [Neisseria meningitidis H44/76] Length = 239 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFADR-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 186 Query: 183 PDHDPRFTVVVEISGLA 199 +D F + ++ L Sbjct: 187 YANDSMFVISCDLGELG 203 >gi|225010255|ref|ZP_03700727.1| Ribonuclease III [Flavobacteria bacterium MS024-3C] gi|225005734|gb|EEG43684.1| Ribonuclease III [Flavobacteria bacterium MS024-3C] Length = 256 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 113/221 (51%), Gaps = 18/221 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ + +G+ N S+ +KA H S+ +YERLEFLGD +LG +IS ++N Sbjct: 31 FTGMRNILGFKPKNLSIYKKAFIHRSLHLKDPQGNPLNYERLEFLGDAMLGAIISKYIYN 90 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +A EG L+ + +VS E +++ +EL+L SF V S + KD F ++ +V E+ Sbjct: 91 EVPAADEGYLTKMRSKIVSREHLNELGKELNLLSF--VDSKVHKD--HFGDNVHGNVFEA 146 Query: 122 LIAALYLDGGIEVAGTFVDKYWK------QRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 L+ A+YLD G + F+ Y K A GK K+ L EW K T + Sbjct: 147 LVGAIYLDRGYKYCENFI--YLKIIEPHVDLAKLEGKV-TSYKSLLIEWCQ-KEKKTFNF 202 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 ++ SG D F+V + I+ ++G SK+ AE+ AA Sbjct: 203 QIFEDSGNDPIKHFSVRLAINKKVISKGRGPSKKKAEEQAA 243 >gi|284048724|ref|YP_003399063.1| ribonuclease III [Acidaminococcus fermentans DSM 20731] gi|283952945|gb|ADB47748.1| ribonuclease III [Acidaminococcus fermentans DSM 20731] Length = 234 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 107/231 (46%), Gaps = 10/231 (4%) Query: 1 MSALRYSTLE---KRIGYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILG 52 M R LE +++G + LL+ ALTH+S ++ +++ +RLEFLGD +L Sbjct: 1 MEEQRQKELEGLCRQLGMEMKDLHLLDMALTHTSYAYESKKNPRPQHNQRLEFLGDSVLS 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L++ST ++ EGELS LV ET +Q+A E L + + Sbjct: 61 LVVSTHIYKTCPQMDEGELSKLRAFLVCEETLAQLATENHLGDHLLLGKGEINLDGEENP 120 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFG 170 SI AD ES++ A YLD G +++ R L + RD KT LQE Sbjct: 121 SILADAFESVLGAYYLDQGFARVTGLLNRLLISRIPELTADGIDRDYKTRLQEVVQKDGP 180 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y GP H+ F + V ++G +G +K+ AEQ AA E LK Sbjct: 181 AEILYDQVSAEGPSHNRTFVMRVLVNGNELGKGRGRTKKEAEQRAAREALK 231 >gi|42561014|ref|NP_975465.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81400621|sp|Q6MTC9|RNC_MYCMS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|42492511|emb|CAE77107.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321343|gb|ADK69986.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 232 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/212 (33%), Positives = 109/212 (51%), Gaps = 10/212 (4%) Query: 19 NRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 N L +ALTH+S + H + SY+RLEFLGD IL + +S LF ++ EGEL+ Sbjct: 16 NEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFFNYSKLSEGELTRLRA 75 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL----DGGI 132 S V ET +VA++++L + +++ SI ADV E+L AA+YL DG + Sbjct: 76 STVREETLFRVAKDINLGALVKLGHGEYITKGYEKPSILADVFEALTAAIYLDQKEDGLV 135 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS--GPDHDPRFT 190 G + KY K + +D K+ELQE ++ +Y + ++ +T Sbjct: 136 TWLGQTLFKYIKDSNFIND--TKDFKSELQELLQSEKRSDLKYIIEKEDFFANENKILYT 193 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V V ++G G SK+ AEQ AA++ L + Sbjct: 194 VSVNLNGQKFGVGKGFSKQEAEQNAASDCLSK 225 >gi|330466266|ref|YP_004404009.1| ribonuclease iii [Verrucosispora maris AB-18-032] gi|328809237|gb|AEB43409.1| ribonuclease iii [Verrucosispora maris AB-18-032] Length = 287 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 73/217 (33%), Positives = 108/217 (49%), Gaps = 13/217 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE G + + LLE+ALTH S ++ + ERLEFLGD +LG++I+T LF++ Sbjct: 14 LEAAFGVSM-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDL 72 Query: 67 KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ S+V+ + VAR L L ++ + SI AD +E+L+ Sbjct: 73 PEGQLAKLRASVVNMRALADVARGLGPDGLGPYLLLGKGEETTGGRDKASILADTLEALL 132 Query: 124 AALYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 A+YL G++ A + D + A + D KT LQE A PEY++ Sbjct: 133 GAIYLQYGLDTAAEVIHRLFDPLMAESAGRGAAL--DWKTSLQELTAALGLGVPEYRIEG 190 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +GPDH FT V ++G SK+ AEQ AA Sbjct: 191 -AGPDHLKTFTAWVVVAGNRYGGADGRSKKEAEQRAA 226 >gi|291299631|ref|YP_003510909.1| ribonuclease III [Stackebrandtia nassauensis DSM 44728] gi|290568851|gb|ADD41816.1| ribonuclease III [Stackebrandtia nassauensis DSM 44728] Length = 243 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 108/204 (52%), Gaps = 12/204 (5%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +L A+TH S ++ + ERLEFLGD +LGL+++ L+ F EG+L+ S+V Sbjct: 27 MLTLAMTHRSYAYERGGLPTNERLEFLGDAVLGLVVTATLYRQFPDLPEGQLARLRASVV 86 Query: 80 SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + + VAR L + + + SI AD VE+L+ ALYL+ G++VA Sbjct: 87 NMRALAGVARALGPGGVGPHLLLGKGEESSGGRDKNSILADSVEALLGALYLEHGMDVAA 146 Query: 137 TFVDKYWK---QRALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 V K + + A + G D KT LQE + A GV P+Y+++ +GPDH RFT Sbjct: 147 GVVHKLFDPMIEVAARRGAA-LDWKTSLQELTSGAGLGV-PDYRIS-ETGPDHAKRFTAW 203 Query: 193 VEISGLAPAQGMDCSKRAAEQVAA 216 + G +G SK+ AEQ+AA Sbjct: 204 AVVGGEEFGEGTGGSKKEAEQIAA 227 >gi|256384023|gb|ACU78593.1| ribonuclease III [Mycoplasma mycoides subsp. capri str. GM12] gi|256384855|gb|ACU79424.1| ribonuclease III [Mycoplasma mycoides subsp. capri str. GM12] gi|296455406|gb|ADH21641.1| ribonuclease III [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 232 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 10/212 (4%) Query: 19 NRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 N L +ALTH+S + H + SY+RLEFLGD IL + +S LF ++ EGEL+ Sbjct: 16 NEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFFNYSKLSEGELTRLRA 75 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 S V ET +VA++++L + +++ SI ADV E+L AA+YLD + Sbjct: 76 STVREETLFRVAKDINLGALVKLGHGEYITKGYEKPSILADVFEALTAAIYLDQKEDGLV 135 Query: 137 TFVD----KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS--GPDHDPRFT 190 T++D KY K + +D K+ELQE ++ +Y + ++ +T Sbjct: 136 TWLDQTLFKYIKDSNFIND--TKDFKSELQELLQSEKRSDLKYIIEKEDFFANENKILYT 193 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V V ++G G SK+ AEQ AA++ L + Sbjct: 194 VSVNLNGQKFGVGKGFSKQEAEQNAASDCLSK 225 >gi|331703478|ref|YP_004400165.1| ribonuclease III [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802033|emb|CBW54187.1| Ribonuclease III [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 232 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 10/212 (4%) Query: 19 NRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 N L +ALTH+S + H + SY+RLEFLGD IL + +S LF ++ EGEL+ Sbjct: 16 NEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFFNYSKLSEGELTRLRA 75 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 S V ET +VA++++L + +++ SI ADV E+L AA+YLD + Sbjct: 76 STVREETLFRVAKDINLGALVKLGHGEYITKGYEKPSILADVFEALTAAIYLDQKEDGLV 135 Query: 137 TFVD----KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS--GPDHDPRFT 190 T++D KY K + +D K+ELQE ++ +Y + ++ +T Sbjct: 136 TWLDQTLFKYIKDSNFIND--TKDFKSELQELLQSEKRSDLKYIIEKEDFFANENKILYT 193 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V V ++G G SK+ AEQ AA++ L + Sbjct: 194 VSVNLNGQKFGVGKGFSKQEAEQNAASDCLSK 225 >gi|304388061|ref|ZP_07370190.1| ribonuclease III [Neisseria meningitidis ATCC 13091] gi|304337918|gb|EFM04058.1| ribonuclease III [Neisseria meningitidis ATCC 13091] Length = 267 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 39 HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 96 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 156 VSFDADFNTAEKVVRHLFADR-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 214 Query: 183 PDHDPRFTVVVEISGLA 199 +D F + ++ L Sbjct: 215 YANDSMFVISCDLGELG 231 >gi|94469415|gb|ABF20195.1| ribonuclease III [Ehrlichia ruminantium] Length = 138 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 74/132 (56%) Query: 91 LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 ++L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK A Sbjct: 1 INLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHM 60 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I+ +K+ Sbjct: 61 KVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATGHNKKL 120 Query: 211 AEQVAAAEVLKR 222 AEQ AA+ +L + Sbjct: 121 AEQKAASLMLAK 132 >gi|314933411|ref|ZP_07840776.1| ribonuclease III [Staphylococcus caprae C87] gi|313653561|gb|EFS17318.1| ribonuclease III [Staphylococcus caprae C87] Length = 245 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 102/216 (47%), Gaps = 11/216 (5%) Query: 14 GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 G++F N L ++A +HSS + + + ERLEFLGD +L L +S LF+ EG Sbjct: 25 GFSFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPHLPEG 84 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 L+ ++V + A ++DL I + K S+ +D E+ + ALYLD Sbjct: 85 NLTKMRATIVCEPSLVIFANKIDLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLD 144 Query: 130 GGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 G++ F +K Y + L D KT+ QE+ H + Y++ GP H Sbjct: 145 QGLDTVWKFAEKVIFPYVEDDELVG---VVDFKTQFQEYVHRQNKGDVTYRLIKEEGPAH 201 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 FT V + A A+G +K+ +EQ AA + K Sbjct: 202 HRLFTSEVILENNAVAEGKGKTKKESEQKAAEQAYK 237 >gi|295425203|ref|ZP_06817906.1| ribonuclease III [Lactobacillus amylolyticus DSM 11664] gi|295064979|gb|EFG55884.1| ribonuclease III [Lactobacillus amylolyticus DSM 11664] Length = 227 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/201 (33%), Positives = 98/201 (48%), Gaps = 10/201 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65 L ++ G F N LLE+A THSS ++ + E YE+LEFLGD +L L +S L+ H+ + Sbjct: 10 LNEKYGIKFHNEKLLEEAFTHSSYANEHPEGVRDYEKLEFLGDAVLELAVSDYLYRHYPN 69 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL+ +++V E S+ A E I + K ++ DV E+ A Sbjct: 70 LNEGELTRMRSNIVRTEGFSEFAIECGFQDEINLGKGEEKAGARHRKTLLEDVFEAFNGA 129 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG- 182 LYLD G++ F+ + G+F RD KT+LQE V EY S Sbjct: 130 LYLDQGMKAVTHFL-HLTVYPLIDKGEFDASRDYKTDLQELLQKDGPVNIEYVTLSESQL 188 Query: 183 PDHDPRFTVVVEISGLAPAQG 203 P H F V ++I+ +QG Sbjct: 189 PSH---FVVELKINDHVQSQG 206 >gi|313884921|ref|ZP_07818673.1| ribonuclease III [Eremococcus coleocola ACS-139-V-Col8] gi|312619612|gb|EFR31049.1| ribonuclease III [Eremococcus coleocola ACS-139-V-Col8] Length = 233 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 98/207 (47%), Gaps = 5/207 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 ++K G F N +L+ A H+S ++ + + ERLEFLGD +L L+ S LFN + Sbjct: 8 IQKNTGITFTNIEILQTAFCHTSYANEHAKEKLKDNERLEFLGDAVLELITSDFLFNTYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ LV + + VAR+ L I++ F SI +D E+ + Sbjct: 68 DKPEGQLTRMRAQLVKEPSLALVARKYQLDQLIQLGKGEEASGGRFRDSIVSDAFEAFLG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLD G F+ + + L+ K D KT QE ++ V +Y++ GP Sbjct: 128 AIYLDQGFARVTEFLQQALLKPHLQIIKVINIDYKTLFQEKVQSQGPVNIDYRLIKEEGP 187 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRA 210 H F V + + +QG SK++ Sbjct: 188 AHHRLFVVALYLDDQLVSQGQGYSKKS 214 >gi|319410059|emb|CBY90393.1| ribonuclease III [Neisseria meningitidis WUE 2594] Length = 310 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 7/197 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 82 HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 138 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 139 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 198 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D A V + +R ++ F+ +D KT LQE A+ P+Y++ + G Sbjct: 199 VSFDADFNTAEKVVRHLFAER-VRRVDFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 257 Query: 183 PDHDPRFTVVVEISGLA 199 +D F + ++ L Sbjct: 258 HANDSMFVISCDLGELG 274 >gi|186681704|ref|YP_001864900.1| ribonuclease III [Nostoc punctiforme PCC 73102] gi|186464156|gb|ACC79957.1| ribonuclease III [Nostoc punctiforme PCC 73102] Length = 239 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 108/199 (54%), Gaps = 7/199 (3%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL+ ALTH ++S S +YE+LEF+GD ++ L+ + +L+ ++ G+ + + LVS Sbjct: 31 LLDLALTHPTVSDS--ANYEQLEFVGDAVVRLVSAVVLWENYPDCPVGDFAAIRSVLVSD 88 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFVD 140 +Q+AR L ++ V+ D + + AD E+++ ALYL +E+ +++D Sbjct: 89 RILAQLARIYGLELYLLVAGSATADKVGQESRL-ADAFEAVLGALYLSTQNLELIRSWLD 147 Query: 141 KYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISG 197 ++++ ++ R + K LQEW A+F V PEY+V + P H+ RF V + G Sbjct: 148 PHFQELTTEIRLDPARLNYKAALQEWTQAQFKVLPEYRVVEVTQPHHNQERFMAEVWLHG 207 Query: 198 LAPAQGMDCSKRAAEQVAA 216 +G S + AEQ AA Sbjct: 208 KKLGEGKGRSIKTAEQAAA 226 >gi|254415469|ref|ZP_05029229.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420] gi|196177650|gb|EDX72654.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420] Length = 239 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 11/202 (5%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 STLE N +L ALTH S + + E ERLEFLGD +LG ++ LL+ + Sbjct: 9 STLEMNQLPTIKNETLRLSALTHRSYVNEHPKAGEHNERLEFLGDAVLGFVVGELLYKRY 68 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 E L+ +LV + ++ A +L + +R+ K+ ++ +D +E+ + Sbjct: 69 PDVSEAHLTRLRANLVDEKQLAKFASQLGIGDLMRLGKGADKEGGRQNPALLSDTLEAYM 128 Query: 124 AALYLDGGIEVAGTFV--------DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 AA Y++ GI+ F+ D Q++ K D K Q+WA A F P Y Sbjct: 129 AAYYIESGIDAVRQFIYPLFSRVADSIAVQQSDTEPKNLVDPKGRFQQWALANFVENPTY 188 Query: 176 KVTFRSGPDHDPRFTVVVEISG 197 + SG DH FT V + G Sbjct: 189 SIIDESGLDHAKEFTAEVRVKG 210 >gi|167764094|ref|ZP_02436221.1| hypothetical protein BACSTE_02477 [Bacteroides stercoris ATCC 43183] gi|167698210|gb|EDS14789.1| hypothetical protein BACSTE_02477 [Bacteroides stercoris ATCC 43183] Length = 315 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 112/225 (49%), Gaps = 13/225 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y K +G+ N E+AL H S S ++ + ERLEFLGD IL ++ +++ Sbjct: 20 YFCFYKILGFFPRNIRFYEQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGDIVYK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF+ +EG L+ + +V ET +++A E+ L ++ S+ S + + + E+ Sbjct: 80 HFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAH-AKFGVTPEYKV 177 I A+YLD G E F++K + + K R + K++L EW+ K V+ E Sbjct: 136 FIGAIYLDQGYERCKQFMEKKILKNYIDLDKMSRKEVNFKSKLIEWSQKTKMEVSFELIE 195 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F D++P F V I GL+ G SK+ ++Q AA LK+ Sbjct: 196 QFLD-QDYNPMFHTEVRIEGLSAGTGTGYSKKESQQNAAQMALKK 239 >gi|110637800|ref|YP_678007.1| ribonuclease III [Cytophaga hutchinsonii ATCC 33406] gi|110280481|gb|ABG58667.1| RNAse III [Cytophaga hutchinsonii ATCC 33406] Length = 247 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 16/220 (7%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLL 59 +RY T G N L + A+ H+S + +ESYERLE+LGD ILG +++ L Sbjct: 27 IRYVT-----GMWPGNLHLYQMAIVHTSAADENESGVKESYERLEYLGDSILGAVVAEYL 81 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F EG L+ + +V+ E +QV ++L L+ + + K S+ DVV Sbjct: 82 FKRFPFKDEGFLTEIRSRIVNREILNQVGKDLGLSDIVVFNGSKGK---QGHKSLYGDVV 138 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYK 176 E+++ A+YLD G E A FV K + ++ K+ L EW K E+ Sbjct: 139 EAIVGAVYLDKGFENAKKFVLKKIVSSQIDVDAIIQNNKNFKSILLEWCQ-KENKKLEFV 197 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + SG H F V ++ + QG+ SK+ AEQ AA Sbjct: 198 IIEESGHRHQKVFKAEVRVADESKGQGIGFSKKKAEQNAA 237 >gi|154493472|ref|ZP_02032792.1| hypothetical protein PARMER_02811 [Parabacteroides merdae ATCC 43184] gi|154086682|gb|EDN85727.1| hypothetical protein PARMER_02811 [Parabacteroides merdae ATCC 43184] Length = 301 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 13/230 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M+ YS+L K +G+ N L E+A H S S + + ERLEFLGD +L +++ Sbjct: 15 MNKEPYSSLYKILGFYPDNIHLYEQAFLHKSSSVESGDGRWLNNERLEFLGDAVLDAVVA 74 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +++ HF + +EG L+ + +V ET ++VA EL L + S+ L S + Sbjct: 75 DIVYKHFQNKREGFLTNTRSKIVQRETMNRVAVELGLDKMVVYSAKL----SSHNNHMYG 130 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVT 172 + +E+LI A+YLD G EV F+ ++ + R + K+ L EW+ K ++ Sbjct: 131 NALEALIGAIYLDQGYEVCYNFIQNVLIKKHVNLETIARKEVNFKSSLIEWSQKNKLEIS 190 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + +F + D +P F V +S G+ SK+ ++Q AA +K+ Sbjct: 191 FDLIESF-TDNDGNPVFQTGVTLSDTQIGVGIGYSKKESQQSAAKMAIKK 239 >gi|302525051|ref|ZP_07277393.1| ribonuclease III [Streptomyces sp. AA4] gi|302433946|gb|EFL05762.1| ribonuclease III [Streptomyces sp. AA4] Length = 246 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 102/208 (49%), Gaps = 14/208 (6%) Query: 19 NRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL +LTH S + H ERLEFLGD +LGL+++ L+ EG+L+ Sbjct: 25 DPELLRLSLTHRSYAYEHGGLPPNERLEFLGDAVLGLVVTDHLYTTHPDLPEGQLAKLRA 84 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIE 133 S+V+ + VAR L + + + SI AD +E++I A YL GIE Sbjct: 85 SVVNMHALAGVARGLGEGGLGAHLLLGKGEELTGGRDKASILADGLEAVIGATYLAHGIE 144 Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPR 188 VA V D + L+ D KT LQE A GV PEY+V SGPDH Sbjct: 145 VARKLVHHLFDGLLAEAPLRGAGL--DWKTSLQELTASGGLGV-PEYRVE-DSGPDHRKE 200 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAA 216 FT V ++G A +G +K+ AEQ AA Sbjct: 201 FTATVLVAGRALGEGNGTTKKEAEQKAA 228 >gi|294668882|ref|ZP_06733972.1| ribonuclease III [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309179|gb|EFE50422.1| ribonuclease III [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 233 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 107/211 (50%), Gaps = 6/211 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +++++ Y F LL +ALTH S S + E R EF+GD IL I+ +L++ F E Sbjct: 4 IQQKLQYRFKQPELLTRALTHRSYSSRHNE---RFEFVGDAILNYTIAKMLYDTFLDLPE 60 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS +LV+ +T +++A EL + + + + K SI +D +E++ AA+ Sbjct: 61 GRLSRLRANLVNQDTLAEIATELKVGDALLLGNGELKSGGFRRPSILSDAMEAMFAAVSF 120 Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D A V + +R ++ +DAKT LQE A+ P+Y++ + G + Sbjct: 121 DTDFNAAEQVVRHLFARRVGSISFDNEGKDAKTMLQEALQARRLALPKYRIEHQEGEGYT 180 Query: 187 PRFTVVVEISGLAPAQGMDC-SKRAAEQVAA 216 RFTV ++ L + S+RAAEQ A Sbjct: 181 ARFTVSCDLGELGFITTAEAHSRRAAEQQTA 211 >gi|126655310|ref|ZP_01726749.1| Ribonuclease III [Cyanothece sp. CCY0110] gi|126622789|gb|EAZ93494.1| Ribonuclease III [Cyanothece sp. CCY0110] Length = 240 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 109/204 (53%), Gaps = 7/204 (3%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N LL+ ALTH +IS + +Y++LEF+GD ++ L+ + +L + GE + + L Sbjct: 28 NLELLDLALTHPTISR--ENNYQQLEFVGDSVIRLVSAEILLETYPDELVGEFAAIRSIL 85 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGT 137 VS T ++ A + L ++ ++ + +D ++ + AD E+++ ALYL + + Sbjct: 86 VSDRTLAEFAEQYGLDRYLLMADSVAQDTMGRVSWL-ADAFEAVLGALYLSTKNMTLVRP 144 Query: 138 FVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVE 194 ++D ++A ++S R++ K LQEW A++ + PEY+VT + HD RF V Sbjct: 145 WLDPLLLKKAAEIRSDPARQNYKDALQEWTQAQYKILPEYRVTEQDKDRGHDERFFAEVS 204 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAE 218 + G SK+ AEQ AA + Sbjct: 205 LKDRKLGSGYGRSKKMAEQAAAKD 228 >gi|330983107|gb|EGH81210.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 132 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 54/129 (41%), Positives = 74/129 (57%), Gaps = 3/129 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF A Sbjct: 6 SRLERQLGYTFKDQELMVLALTHRSFAG---RNNERLEFLGDAILNFVAGEALFERSPQA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS LV ET + +AR DL ++R+ S K SI AD +E+LI A+ Sbjct: 63 REGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122 Query: 127 YLDGGIEVA 135 YLD G+E A Sbjct: 123 YLDAGMEAA 131 >gi|329770217|ref|ZP_08261607.1| ribonuclease III [Gemella sanguinis M325] gi|328837023|gb|EGF86667.1| ribonuclease III [Gemella sanguinis M325] Length = 237 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 104/204 (50%), Gaps = 9/204 (4%) Query: 26 ALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 A +HSS ++ + +YERLEFLGD ++ L S LF F + EGEL+ S+V Sbjct: 30 AFSHSSYTNEKRIAKHLNYERLEFLGDAVVELTTSEFLFKKFPNLAEGELTKLRASIVCE 89 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 +T + A +L+L I + K ++ AD+ ES A+YL+ G+E TF+ Sbjct: 90 KTLVKYALQLNLDKCIFLGKGEEKMGGRSRAALLADIFESFTGAMYLEAGLETVKTFLSN 149 Query: 142 --YWKQRALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + + + + F D KT LQE+ + K GV EY V SGP H FT V I G Sbjct: 150 TLFTEVDSFEYLSF-VDYKTILQEYVSKIKLGVI-EYTVLDSSGPSHLKTFTSAVIIDGK 207 Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222 G +K+ +EQ++A L++ Sbjct: 208 QYGSGTAKTKKESEQLSAKAALEK 231 >gi|223043742|ref|ZP_03613785.1| ribonuclease III [Staphylococcus capitis SK14] gi|222442839|gb|EEE48941.1| ribonuclease III [Staphylococcus capitis SK14] Length = 245 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 101/216 (46%), Gaps = 11/216 (5%) Query: 14 GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 G+ F N L ++A +HSS + + + ERLEFLGD +L L +S LF+ EG Sbjct: 25 GFNFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPHLPEG 84 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 L+ ++V + A ++DL I + K S+ +D E+ + ALYLD Sbjct: 85 NLTKMRATIVCEPSLVIFANKIDLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLD 144 Query: 130 GGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 G++ F +K Y + L D KT+ QE+ H + Y++ GP H Sbjct: 145 QGLDTVWKFAEKVIFPYVEDDELVG---VVDFKTQFQEYVHRQNKGDVTYRLIKEEGPAH 201 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 FT V + A A+G +K+ +EQ AA + K Sbjct: 202 HRLFTSEVILENNAVAEGKGKTKKESEQKAAEQAYK 237 >gi|240047461|ref|YP_002960849.1| Ribonuclease III [Mycoplasma conjunctivae HRC/581] gi|239985033|emb|CAT05026.1| Ribonuclease III [Mycoplasma conjunctivae] Length = 228 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 17/211 (8%) Query: 19 NRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 N + +ALTH S H S YE LEFLGD I+ +S +F+ + KEG+ S Sbjct: 22 NLEIYNQALTHKSYQHFNPNSSHYEMLEFLGDSIINFKVSEFIFSKINFQKEGQASQLRA 81 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +S+ T +++ +L L+ I+V KD+ + T ++ADV ES AA+YLD G EV Sbjct: 82 KSISSLTFAKICDDLQLSDLIQVGKG-AKDILT-NTKLKADVFESFCAAIYLDQGNEVLD 139 Query: 137 TFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV-- 193 F++KY +++ K +D K+E QE K K+T++S D F + Sbjct: 140 LFLEKYLYDFVIQNAKHNNKDPKSEFQE----KIQSFSTEKITYQSTKQSDGSFQSELIW 195 Query: 194 --EISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +I G+ + M + AE AA + L+R Sbjct: 196 DNQIFGVGSGKSM----KEAEFNAARQALER 222 >gi|100271808|gb|ABF69304.1| ribonuclease III [Ehrlichia ruminantium] gi|100271814|gb|ABF69308.1| ribonuclease III [Ehrlichia ruminantium] gi|100271820|gb|ABF69312.1| ribonuclease III [Ehrlichia ruminantium] gi|100271823|gb|ABF69314.1| ribonuclease III [Ehrlichia ruminantium] gi|100271826|gb|ABF69316.1| ribonuclease III [Ehrlichia ruminantium] gi|100271829|gb|ABF69318.1| ribonuclease III [Ehrlichia ruminantium] gi|100271835|gb|ABF69322.1| ribonuclease III [Ehrlichia ruminantium] gi|100271847|gb|ABF69330.1| ribonuclease III [Ehrlichia ruminantium] gi|108951328|gb|ABG25048.1| ribonuclease III [Ehrlichia ruminantium] gi|108951331|gb|ABG25050.1| ribonuclease III [Ehrlichia ruminantium] Length = 137 Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 73/131 (55%) Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 +L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK A Sbjct: 1 NLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I+ +K+ A Sbjct: 61 VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATGHNKKLA 120 Query: 212 EQVAAAEVLKR 222 EQ AA+ +L + Sbjct: 121 EQKAASLMLAK 131 >gi|81428322|ref|YP_395322.1| ribonuclease (RNase III) [Lactobacillus sakei subsp. sakei 23K] gi|90101628|sp|Q38XR8|RNC_LACSS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|78609964|emb|CAI55011.1| Ribonuclease (RNase III) [Lactobacillus sakei subsp. sakei 23K] Length = 230 Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 7/199 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M A S L R G F N +LL++A THSS + ++E ERLEFLGD ++ + +S Sbjct: 1 MDAALVSELRARYGIEFNNLALLDEAFTHSSYVNEHRELGLRDNERLEFLGDAVMEITVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+L+ ++V ++ S ++E +IR+ K+ ++ Sbjct: 61 EYLYKKYPDWPEGKLTRLRAAIVCTKSFSSFSKEAHFDRYIRLGKGEEKNGARARATLLE 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPE 174 D+ E+ AL+LD G + FV + + +++G+F + D KT LQE+ + + Sbjct: 121 DLFEAFNGALFLDQGRDAVVDFVSQVIFPK-IEAGEFSDQTDYKTNLQEFLQQDGEIEID 179 Query: 175 YKVTFRSGPDHDPRFTVVV 193 Y++ GP HD +F V V Sbjct: 180 YQLLAEVGPSHDRQFEVDV 198 >gi|158312991|ref|YP_001505499.1| ribonuclease III [Frankia sp. EAN1pec] gi|158108396|gb|ABW10593.1| Ribonuclease III [Frankia sp. EAN1pec] Length = 306 Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 104/202 (51%), Gaps = 14/202 (6%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL++ALTH S ++ + ERLEFLGD +LGL+++ LF EG+L+ + S+V Sbjct: 26 LLDRALTHRSYAYENGGLPTNERLEFLGDAVLGLIVTAALFRRHPDLPEGQLAKQRASVV 85 Query: 80 SAETCSQVARELDLA---SFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + + VAR + A ++ + SI AD +E++I A+YL ++VA Sbjct: 86 NMRALADVARRIGTAGIGPYLLLGRGEEATGGRDKPSILADTLEAVIGAVYLSNSLDVAS 145 Query: 137 TFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDPRFTV 191 FV D + A + D KT LQE A G+ P+Y VT +GPDH RFT Sbjct: 146 GFVHRLFDPLLDEAAGRGAGL--DWKTSLQEQT-ALLGLGPPDYAVT-EAGPDHAKRFTA 201 Query: 192 VVEISGLAPAQGMDCSKRAAEQ 213 ++G +G SK+ AEQ Sbjct: 202 FARVAGEVLGEGEGGSKKEAEQ 223 >gi|100271817|gb|ABF69310.1| ribonuclease III [Ehrlichia ruminantium] Length = 137 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 73/131 (55%) Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 +L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK A Sbjct: 1 NLGIFIIMSDGERSCGGAKNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I +K+ A Sbjct: 61 VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATGHNKKPA 120 Query: 212 EQVAAAEVLKR 222 EQ AA+ +L++ Sbjct: 121 EQKAASLMLEK 131 >gi|332664519|ref|YP_004447307.1| ribonuclease 3 [Haliscomenobacter hydrossis DSM 1100] gi|332333333|gb|AEE50434.1| Ribonuclease 3 [Haliscomenobacter hydrossis DSM 1100] Length = 248 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 114/225 (50%), Gaps = 14/225 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY-----ERLEFLGDRILGLLISTLLFNHF 63 L+ +GY AN + + A +H S S+S ++Y ERLE+LGD +LG +++ LF + Sbjct: 22 LKPLLGYTPANLGIFKLAFSHKSTSNSGDKAYPMQNNERLEYLGDAVLGTIVAEYLFKKY 81 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG L+ + LV ++ +++ +++L + + R S+ + VE+L+ Sbjct: 82 PDSNEGFLTKMRSKLVKRKSLNRIGDKMELELLLSEYNTTR-----LSRSMLGNAVEALV 136 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFR 180 A+YLD G FV + ++ + + R + K++L EW K G YK+ R Sbjct: 137 GAVYLDRGYASTKIFVINHMLRKYVNIHELERLDDNYKSQLLEWCQ-KSGKNVTYKLLAR 195 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + RF V V I+ A D +K++AEQ+A+ + + GI Sbjct: 196 YKFEKRDRFKVAVMINNKRVATADDFNKKSAEQMASEKAMIALGI 240 >gi|329942692|ref|ZP_08291471.1| ribonuclease III [Chlamydophila psittaci Cal10] gi|332287287|ref|YP_004422188.1| ribonuclease III [Chlamydophila psittaci 6BC] gi|313847871|emb|CBY16866.1| ribonuclease III [Chlamydophila psittaci RD1] gi|325506653|gb|ADZ18291.1| ribonuclease III [Chlamydophila psittaci 6BC] gi|328814952|gb|EGF84941.1| ribonuclease III [Chlamydophila psittaci Cal10] gi|328914533|gb|AEB55366.1| ribonuclease III [Chlamydophila psittaci 6BC] Length = 237 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 3/215 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E ++ + F LL ALTH S + + E ERLEFLGD +L L+++ LF F S Sbjct: 10 VEAKLNFTFTQPKLLVTALTHPSYRNETATITEDSERLEFLGDAVLCLIVTEHLFLLFPS 69 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG LS +L++A +C Q L L ++ + R TS A++ E+++ A Sbjct: 70 MDEGTLSTARAALINAVSCCQYTDALGLGEYLLIGKGERIQNERGRTSAYANLFEAILGA 129 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +YLDGG+ A + + K LQ+ P Y+ + P Sbjct: 130 VYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKHLRTLPVYQCESWTSPQG 189 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + V ++ +G SK+ AE++AA + L Sbjct: 190 ASGYHIRVIVNNEVWGEGFALSKKEAEKLAAQQAL 224 >gi|100271838|gb|ABF69324.1| ribonuclease III [Ehrlichia ruminantium] gi|100271841|gb|ABF69326.1| ribonuclease III [Ehrlichia ruminantium] Length = 137 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 73/131 (55%) Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 +L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK A Sbjct: 1 NLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I+ +K+ A Sbjct: 61 VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVGINSHETLHATGHNKKLA 120 Query: 212 EQVAAAEVLKR 222 EQ AA+ +L + Sbjct: 121 EQKAASLMLAK 131 >gi|224536731|ref|ZP_03677270.1| hypothetical protein BACCELL_01607 [Bacteroides cellulosilyticus DSM 14838] gi|224521647|gb|EEF90752.1| hypothetical protein BACCELL_01607 [Bacteroides cellulosilyticus DSM 14838] Length = 296 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 115/225 (51%), Gaps = 13/225 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y K +G+ N L ++AL H S S ++ + ERLEFLGD IL ++ +++ Sbjct: 20 YFCFYKILGFYPRNIQLYQQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGDIVYK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF+ +EG L+ + +V ET +++A E+ L ++ S+ S + + + E+ Sbjct: 80 HFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAH-AKFGVTPEYKV 177 I A+YLD G E F+++ + + K R + K++L EW+ +K V+ E Sbjct: 136 FIGAIYLDQGYERCKRFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQKSKVEVSFELIE 195 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F D++P F + I G++ +G SK+ ++Q AA LK+ Sbjct: 196 QFLD-EDYNPMFHTEIRIEGISAGKGTGYSKKESQQNAAQAALKK 239 >gi|284928941|ref|YP_003421463.1| RNAse III [cyanobacterium UCYN-A] gi|284809400|gb|ADB95105.1| RNAse III [cyanobacterium UCYN-A] Length = 243 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 108/199 (54%), Gaps = 7/199 (3%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 +L ALTH + S +++Y++LEF+GD ++ L+ + +L ++ + GE + + LVS Sbjct: 31 ILNLALTHPTFSQ--KDNYQQLEFVGDSVIRLVAAEILLENYPNELVGEFAAIRSILVSD 88 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVD 140 T ++ A L ++ ++ + KD ++ + AD E+L+ ALYL+ + + ++D Sbjct: 89 NTLAEFAEVYGLERYLLMAESVAKDKIGRVSWL-ADTFEALLGALYLNRQNMSLIRPWLD 147 Query: 141 KYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISG 197 +A +++ R++ K LQEW+ +++ + P+Y+V G +H RF V + Sbjct: 148 PLLITKAAEIRADPARQNYKDALQEWSQSQYKLLPKYQVVQHQGSENHHQRFFAEVWVKN 207 Query: 198 LAPAQGMDCSKRAAEQVAA 216 G CSK+ AEQ AA Sbjct: 208 NNLGSGYGCSKKVAEQAAA 226 >gi|227550768|ref|ZP_03980817.1| ribonuclease III [Enterococcus faecium TX1330] gi|314937654|ref|ZP_07844980.1| ribonuclease III [Enterococcus faecium TX0133a04] gi|314942847|ref|ZP_07849660.1| ribonuclease III [Enterococcus faecium TX0133C] gi|314948017|ref|ZP_07851421.1| ribonuclease III [Enterococcus faecium TX0082] gi|314950935|ref|ZP_07854004.1| ribonuclease III [Enterococcus faecium TX0133A] gi|314991417|ref|ZP_07856894.1| ribonuclease III [Enterococcus faecium TX0133B] gi|314995062|ref|ZP_07860182.1| ribonuclease III [Enterococcus faecium TX0133a01] gi|227180086|gb|EEI61058.1| ribonuclease III [Enterococcus faecium TX1330] gi|313590788|gb|EFR69633.1| ribonuclease III [Enterococcus faecium TX0133a01] gi|313593897|gb|EFR72742.1| ribonuclease III [Enterococcus faecium TX0133B] gi|313596944|gb|EFR75789.1| ribonuclease III [Enterococcus faecium TX0133A] gi|313598319|gb|EFR77164.1| ribonuclease III [Enterococcus faecium TX0133C] gi|313643031|gb|EFS07611.1| ribonuclease III [Enterococcus faecium TX0133a04] gi|313645615|gb|EFS10195.1| ribonuclease III [Enterococcus faecium TX0082] Length = 231 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 7/207 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L++ F + +LLE+A THSS + ++ ERLEFLGD +L L++S LF + Sbjct: 12 LKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYP 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ ++V ++ S+ A+E ++ + ++ D+ E+ + Sbjct: 72 HLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTRPALLCDLFEAFLG 131 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G + F++K + +K+G F D KT+LQE V+ EY++ G Sbjct: 132 ALYLDQGFDTTHAFIEKVIFPK-VKAGAFSHEMDHKTKLQEVLQKSGDVSIEYRLINEEG 190 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 P H+ F + V + G SK+ Sbjct: 191 PAHERVFWIEVYVDDQLIGTGQGKSKK 217 >gi|94469430|gb|ABF20205.1| ribonuclease III [Ehrlichia ruminantium] gi|100271805|gb|ABF69302.1| ribonuclease III [Ehrlichia ruminantium] gi|100271811|gb|ABF69306.1| ribonuclease III [Ehrlichia ruminantium] gi|100271844|gb|ABF69328.1| ribonuclease III [Ehrlichia ruminantium] Length = 137 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 73/131 (55%) Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 +L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK A Sbjct: 1 NLGIFIIMSDGERSCGGAKNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I +K+ A Sbjct: 61 VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATGHNKKLA 120 Query: 212 EQVAAAEVLKR 222 EQ AA+ +L++ Sbjct: 121 EQKAASLMLEK 131 >gi|152965344|ref|YP_001361128.1| ribonuclease III [Kineococcus radiotolerans SRS30216] gi|151359861|gb|ABS02864.1| Ribonuclease III [Kineococcus radiotolerans SRS30216] Length = 224 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 9/189 (4%) Query: 21 SLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 LLE ALTH S ++Y++ + ERLEFLGD +LGL+++ L+ F+ EG L+ Sbjct: 6 GLLELALTHRS--YAYEQGGLPTNERLEFLGDSVLGLVVTHELYTRFEDVSEGRLAKLRA 63 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 ++V++ + +AR LDL + +R+ +SI AD +E++I A +L G++ A Sbjct: 64 AVVNSRALADIARGLDLGAHVRLGKGELGTGGRDKSSILADTMEAVIGAAFLSVGMDGAR 123 Query: 137 TFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 FV + S + D KT LQE ++ P Y +T SGPDH FT Sbjct: 124 EFVLRLTSPLMDSSERLGAGTDWKTALQELTASEGLGVPSYAIT-DSGPDHAKNFTADAV 182 Query: 195 ISGLAPAQG 203 + G G Sbjct: 183 VGGTVLGHG 191 >gi|69246105|ref|ZP_00603811.1| Ribonuclease III [Enterococcus faecium DO] gi|257878770|ref|ZP_05658423.1| ribonuclease III [Enterococcus faecium 1,230,933] gi|257881410|ref|ZP_05661063.1| ribonuclease III [Enterococcus faecium 1,231,502] gi|257885678|ref|ZP_05665331.1| ribonuclease III [Enterococcus faecium 1,231,501] gi|257887975|ref|ZP_05667628.1| ribonuclease III [Enterococcus faecium 1,141,733] gi|257890628|ref|ZP_05670281.1| ribonuclease III [Enterococcus faecium 1,231,410] gi|257893222|ref|ZP_05672875.1| ribonuclease III [Enterococcus faecium 1,231,408] gi|257896407|ref|ZP_05676060.1| ribonuclease III [Enterococcus faecium Com12] gi|257899381|ref|ZP_05679034.1| ribonuclease III [Enterococcus faecium Com15] gi|260558338|ref|ZP_05830534.1| ribonuclease III [Enterococcus faecium C68] gi|261207043|ref|ZP_05921732.1| ribonuclease III [Enterococcus faecium TC 6] gi|289565324|ref|ZP_06445774.1| ribonuclease III [Enterococcus faecium D344SRF] gi|293379492|ref|ZP_06625636.1| ribonuclease III [Enterococcus faecium PC4.1] gi|293556818|ref|ZP_06675379.1| ribonuclease III [Enterococcus faecium E1039] gi|293562991|ref|ZP_06677458.1| ribonuclease III [Enterococcus faecium E1162] gi|293567880|ref|ZP_06679221.1| ribonuclease III [Enterococcus faecium E1071] gi|293570730|ref|ZP_06681780.1| ribonuclease III [Enterococcus faecium E980] gi|294614479|ref|ZP_06694394.1| ribonuclease III [Enterococcus faecium E1636] gi|294618515|ref|ZP_06698077.1| ribonuclease III [Enterococcus faecium E1679] gi|294621998|ref|ZP_06701142.1| ribonuclease III [Enterococcus faecium U0317] gi|68195400|gb|EAN09847.1| Ribonuclease III [Enterococcus faecium DO] gi|257812998|gb|EEV41756.1| ribonuclease III [Enterococcus faecium 1,230,933] gi|257817068|gb|EEV44396.1| ribonuclease III [Enterococcus faecium 1,231,502] gi|257821534|gb|EEV48664.1| ribonuclease III [Enterococcus faecium 1,231,501] gi|257824029|gb|EEV50961.1| ribonuclease III [Enterococcus faecium 1,141,733] gi|257826988|gb|EEV53614.1| ribonuclease III [Enterococcus faecium 1,231,410] gi|257829601|gb|EEV56208.1| ribonuclease III [Enterococcus faecium 1,231,408] gi|257832972|gb|EEV59393.1| ribonuclease III [Enterococcus faecium Com12] gi|257837293|gb|EEV62367.1| ribonuclease III [Enterococcus faecium Com15] gi|260075512|gb|EEW63818.1| ribonuclease III [Enterococcus faecium C68] gi|260078671|gb|EEW66373.1| ribonuclease III [Enterococcus faecium TC 6] gi|289162814|gb|EFD10664.1| ribonuclease III [Enterococcus faecium D344SRF] gi|291589465|gb|EFF21272.1| ribonuclease III [Enterococcus faecium E1071] gi|291592656|gb|EFF24250.1| ribonuclease III [Enterococcus faecium E1636] gi|291595215|gb|EFF26546.1| ribonuclease III [Enterococcus faecium E1679] gi|291598425|gb|EFF29498.1| ribonuclease III [Enterococcus faecium U0317] gi|291600902|gb|EFF31193.1| ribonuclease III [Enterococcus faecium E1039] gi|291605117|gb|EFF34584.1| ribonuclease III [Enterococcus faecium E1162] gi|291609202|gb|EFF38474.1| ribonuclease III [Enterococcus faecium E980] gi|292642015|gb|EFF60181.1| ribonuclease III [Enterococcus faecium PC4.1] Length = 228 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 7/207 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L++ F + +LLE+A THSS + ++ ERLEFLGD +L L++S LF + Sbjct: 9 LKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ ++V ++ S+ A+E ++ + ++ D+ E+ + Sbjct: 69 HLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTRPALLCDLFEAFLG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G + F++K + +K+G F D KT+LQE V+ EY++ G Sbjct: 129 ALYLDQGFDTTHAFIEKVIFPK-VKAGAFSHEMDHKTKLQEVLQKSGDVSIEYRLINEEG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 P H+ F + V + G SK+ Sbjct: 188 PAHERVFWIEVYVDDQLIGTGQGKSKK 214 >gi|100271832|gb|ABF69320.1| ribonuclease III [Ehrlichia ruminantium] Length = 137 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 73/131 (55%) Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 +L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK A Sbjct: 1 NLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I+ +K+ A Sbjct: 61 VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVGINSHETLHATGQNKKLA 120 Query: 212 EQVAAAEVLKR 222 EQ AA+ +L + Sbjct: 121 EQKAASLMLAK 131 >gi|325963729|ref|YP_004241635.1| RNAse III [Arthrobacter phenanthrenivorans Sphe3] gi|323469816|gb|ADX73501.1| RNAse III [Arthrobacter phenanthrenivorans Sphe3] Length = 242 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 101/208 (48%), Gaps = 12/208 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L KR+G F + L ALTH S ++ + ERLEFLGD ILG ++ L+ Sbjct: 7 LLKRLG-VFIDAGTLRLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDALYRDNPDL 65 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ R +++VS + + R L + +I + + SI AD +E+LI A Sbjct: 66 PEGDLAKRRSAVVSTRALAGIGRSLGIGEYIYLGQGEKLTQGKNKASILADTMEALIGAT 125 Query: 127 YLDGGIEVAGTFVDKYWKQ-----RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 Y+ IE A V + AL +G D KT +QE A ++ T Y V + Sbjct: 126 YVSNDIETARQLVMRLIGPLLKDAAALGAGT---DWKTSIQELAASRQLGTIHYAVDG-T 181 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDH FT V+ + G A +G SK+ Sbjct: 182 GPDHARTFTAVLHVGGTAYGKGSGHSKK 209 >gi|294675193|ref|YP_003575809.1| ribonuclease III [Prevotella ruminicola 23] gi|294472646|gb|ADE82035.1| ribonuclease III [Prevotella ruminicola 23] Length = 342 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 25/231 (10%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 +S+L + +G+ N + AL H SI + + ERLEFLGD IL + +++ Sbjct: 21 FSSLYEILGFYPHNIEYYKMALMHKSIRKRNDKGKPLNNERLEFLGDAILDAAVGYIVYR 80 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H++ +EG L+ + LVS ET ++A E+ L++ + +S+ S + ++ + E+ Sbjct: 81 HYEGKREGFLTNTRSKLVSRETLGKLATEMRLSNLL-ISAG---HSTSHNSYVEGNAFEA 136 Query: 122 LIAALYLDGGIE---------VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 L+ A+YLD G E V G F+D + A K F K++L EW+ K V Sbjct: 137 LVGAIYLDRGYEACLWFFENQVLGKFID--IDKVAFKEVNF----KSKLLEWSQ-KNRVR 189 Query: 173 PEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 EYK+T + ++ P FT +V I G+ G SK+ A+Q A+ + L+R Sbjct: 190 LEYKLTKQKKDENGSPVFTYMVIIEGVNGESGSGYSKKEAQQKASKDTLQR 240 >gi|293402241|ref|ZP_06646379.1| ribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304348|gb|EFE45599.1| ribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 227 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 8/217 (3%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 KRI Y ++ L+ +AL HSS + ++ ERLEF+GD +L L +T LF Sbjct: 11 KRIPYT--DKELIRQALVHSSYVNEHKTFAHDNERLEFMGDAVLQLWSTTKLFKLTPELS 68 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+++ LV E ++ R+L L ++ + K SI AD+ E+++ A+Y Sbjct: 69 EGQMTTLRAQLVCEEALAEYNRKLGLGRYLLLGVGEEKTGGRERDSILADMFEAVLGAIY 128 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD G++ +++ A+ K + D KT+LQE+ + T Y+ SGP + Sbjct: 129 LDSGMDSINVILEEVLTP-AITQPKSEKVIDYKTKLQEYIQSDSRKTVHYETIHVSGPSN 187 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F V V + + +G SK+ AEQ+AA + ++ Sbjct: 188 KPEFEVAVMLDDITLGRGKGFSKKRAEQMAAKDAFEK 224 >gi|29840106|ref|NP_829212.1| ribonuclease III [Chlamydophila caviae GPIC] gi|33301541|sp|Q823R4|RNC_CHLCV RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|29834454|gb|AAP05090.1| ribonuclease III [Chlamydophila caviae GPIC] Length = 237 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 3/215 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E ++ + F LL ALTH S + + E ERLEFLGD +L L+++ LF F S Sbjct: 10 VEAKLNFTFTQPKLLVTALTHPSYRNETVTITEDSERLEFLGDAVLCLIVTEHLFLLFPS 69 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG LS +L++A +C Q L L + + R TS A++ E+++ A Sbjct: 70 MDEGTLSTARAALINAVSCCQYTDALGLGEHLLIGKGERIQNERGRTSAYANLFEAVLGA 129 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +YLDGG+ A + + K LQ+ + P Y+ T + Sbjct: 130 VYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKQLRTLPVYQCTPWTSQQG 189 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P + + V ++ +G SK+ AE++AA + L Sbjct: 190 VPGYHIRVIVNDEVWGEGCALSKKEAEKLAAQKAL 224 >gi|86131058|ref|ZP_01049657.1| ribonuclease III [Dokdonia donghaensis MED134] gi|85818469|gb|EAQ39629.1| ribonuclease III [Dokdonia donghaensis MED134] Length = 245 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 107/211 (50%), Gaps = 12/211 (5%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IG+ N ++ EKA TH S+ ++ +YERLEFLGD +LG +I+ LFN E Sbjct: 26 IGFKPKNLAIYEKAFTHRSLGLKKEDGNPLNYERLEFLGDAMLGSVIAAHLFNEVQGGNE 85 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +VS + +++ R+L+L +++ S + +F +I ++ E+L+ A+YL Sbjct: 86 GYLTKMRSKVVSRKHLNELGRDLNLVRYVKASI----PIDNFGANIHGNLFEALVGAIYL 141 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D G F+ K + + K K+ L EW K T +++ +G D Sbjct: 142 DRGYRYCEKFIAKRVIEPYVDIEKLEGRIISYKSVLIEWCQ-KEKHTFKFETFEDTGQDA 200 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 F V + I G A+ SK+ AE++A+ Sbjct: 201 VKHFGVRLHIDGKIIAKARATSKKKAEEIAS 231 >gi|323489554|ref|ZP_08094781.1| ribonuclease 3 [Planococcus donghaensis MPA1U2] gi|323396685|gb|EGA89504.1| ribonuclease 3 [Planococcus donghaensis MPA1U2] Length = 251 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 104/223 (46%), Gaps = 7/223 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFN 61 + L+K + F +LL +A THSS + ++ ERLEFLGD +L L +S L+ Sbjct: 23 FEQLQKELNITFKKPTLLYQAFTHSSYVNEHRRKQFTDNERLEFLGDAVLELSVSHYLYM 82 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGEL+ ++V + A EL +I + ++ ADV ES Sbjct: 83 KYPEMSEGELTKLRAAIVCEPSLVLFANELGFGKYILLGKGEELTGGRTRPALLADVFES 142 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 I ALYLD G+E +F++ + + G F D K++LQE K T Y++ Sbjct: 143 YIGALYLDQGLEPVVSFLEMVLFPK-VDIGAFSHVMDYKSQLQELVQQKNTGTLSYEIID 201 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H F V ++ G SK+ AEQ AA +++ Sbjct: 202 EIGPAHSRVFVTRVSLADRELGVGNGRSKKEAEQQAAQLAIRK 244 >gi|224025527|ref|ZP_03643893.1| hypothetical protein BACCOPRO_02267 [Bacteroides coprophilus DSM 18228] gi|224018763|gb|EEF76761.1| hypothetical protein BACCOPRO_02267 [Bacteroides coprophilus DSM 18228] Length = 308 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 118/225 (52%), Gaps = 14/225 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62 Y + +G+ N + ++AL H S S + + ERLEFLGD IL +++ +++ Sbjct: 20 YLCFYRMLGFYPRNIEIYQQALLHKSSSVKEKGRLLNNERLEFLGDAILDAVVADIVYKK 79 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F+ +EG L+ + +V ET +QVA ++ L I+ ++ S + + + E+L Sbjct: 80 FEGKREGFLTNTRSKIVQRETLNQVAVQIGLDKLIKFTTRQ----SSHNSYMSGNAFEAL 135 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVT 178 + A+YLD G + F+++ + L K R + K++L EW+ KF V E+++T Sbjct: 136 VGAIYLDRGYDACKKFMEERIIAQYLNIDKISRKEVNFKSKLIEWSQKNKFEV--EFRLT 193 Query: 179 FRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +S D +P F V + + +G SK+ ++Q+AA E LK+ Sbjct: 194 GQSIDSDSNPIFETQVMVENIPAGEGKGYSKKESQQLAAQETLKQ 238 >gi|111225163|ref|YP_715957.1| ribonuclease III [Frankia alni ACN14a] gi|111152695|emb|CAJ64436.1| Ribonuclease III (RNase III) [Frankia alni ACN14a] Length = 272 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 102/207 (49%), Gaps = 12/207 (5%) Query: 16 AFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 A + LL++ALTH S ++ + ERLEFLGD +LGL+++ LF EG+L+ Sbjct: 20 AAVDPELLDRALTHRSYAYEKGGLPTNERLEFLGDAVLGLVVTAALFLRHPDLPEGQLAK 79 Query: 74 RFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 + S+V+ + VAR + L ++ + SI AD +E++I A+YL Sbjct: 80 QRASVVNMRALADVARGIGPDGLGPYLLLGRGEETTGGRDKASILADTLEAIIGAVYLSA 139 Query: 131 GIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 G++ A FV D + A + D KT LQE A + P V +GPDH Sbjct: 140 GLDAASIFVHRLFDPLLDEAAGRGAGL--DWKTSLQEQT-ALLALGPPEYVVEEAGPDHA 196 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQ 213 RFT I+G +G SK+ AEQ Sbjct: 197 KRFTAHARIAGEPLGEGEGGSKKEAEQ 223 >gi|18158946|pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution gi|18158947|pdb|1JFZ|B Chain B, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution gi|18158948|pdb|1JFZ|C Chain C, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution gi|18158949|pdb|1JFZ|D Chain D, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution gi|47168733|pdb|1RC5|A Chain A, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.30 Angstrom Resolution gi|47168734|pdb|1RC5|B Chain B, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.30 Angstrom Resolution gi|47168735|pdb|1RC5|C Chain C, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.30 Angstrom Resolution gi|47168736|pdb|1RC5|D Chain D, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.30 Angstrom Resolution Length = 154 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/123 (42%), Positives = 75/123 (60%), Gaps = 8/123 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK++GY F ++SLLEKALTH +S+S +E YE LEFLGD ++ I LL + + +E Sbjct: 8 LEKKLGYTFKDKSLLEKALTH--VSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKRE 65 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS L+S E + +A++L+L FIR+ +I DV E+L AA+Y+ Sbjct: 66 GFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFEALWAAVYI 119 Query: 129 DGG 131 D G Sbjct: 120 DSG 122 >gi|18158935|pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.15 Angstrom Resolution gi|18158936|pdb|1I4S|B Chain B, Crystal Structure Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.15 Angstrom Resolution Length = 147 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/123 (42%), Positives = 75/123 (60%), Gaps = 8/123 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK++GY F ++SLLEKALTH +S+S +E YE LEFLGD ++ I LL + + +E Sbjct: 7 LEKKLGYTFKDKSLLEKALTH--VSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKRE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS L+S E + +A++L+L FIR+ +I DV E+L AA+Y+ Sbjct: 65 GFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFEALWAAVYI 118 Query: 129 DGG 131 D G Sbjct: 119 DSG 121 >gi|256372281|ref|YP_003110105.1| ribonuclease III [Acidimicrobium ferrooxidans DSM 10331] gi|256008865|gb|ACU54432.1| ribonuclease III [Acidimicrobium ferrooxidans DSM 10331] Length = 263 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 101/211 (47%), Gaps = 20/211 (9%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 I A + ++ +AL H S S +S ERLEFLGD ++ L++S L+ + EG L+ Sbjct: 15 IPAALRDHPVVRQALVHKSASRDPLDSNERLEFLGDAVIELVVSDYLYRRYPDVDEGRLT 74 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 ++LVS + V + L I V + + A+ VE+L A+YL GG Sbjct: 75 QVRSALVSRRSLGSVGVQGGLLEAITVGQ-----ADALGPVLAANAVEALAGAVYLAGGF 129 Query: 133 EVAGTFVDKYWKQRALKSGKFRR--------DAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +++ FV A+ R D K+ L + P YKV++ SGPD Sbjct: 130 QLSVAFV------LAILGPSLERVDGDLVLGDYKSLLHQALAKLHHQPPRYKVSW-SGPD 182 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 HD R+ VVV++ G A G S++ AEQ A Sbjct: 183 HDRRYRVVVQLPGGFEAAGEGASRKEAEQEA 213 >gi|241888745|ref|ZP_04776051.1| ribonuclease III [Gemella haemolysans ATCC 10379] gi|241864421|gb|EER68797.1| ribonuclease III [Gemella haemolysans ATCC 10379] Length = 237 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 9/223 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNH 62 + L + G+ + + +HSS ++ + +YERLEFLGD ++ L S LF Sbjct: 11 NNLNEEYGFNLKFSENFKNSFSHSSYTNEKRIAKHLNYERLEFLGDAVVELTTSEFLFKK 70 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EGEL+ S+V +T + A +L L I + K ++ AD+ ES Sbjct: 71 FSELPEGELTKLRASIVCEKTLVKYALQLSLDKCIYLGKGEEKMGGRSRAALLADIFESF 130 Query: 123 IAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTF 179 A+YL+ +EV TF++ + + + L+ F D KT LQE+ + K G EY V Sbjct: 131 TGAMYLESNLEVVKTFLNNTLFTEVQDLEYHSF-VDYKTILQEYISKIKLG-EIEYVVLD 188 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGP H FT V I G +K+ +EQ++A + L++ Sbjct: 189 SSGPSHSKTFTSAVLIGRKQYGSGTATTKKESEQLSAKQALEK 231 >gi|62184964|ref|YP_219749.1| ribonuclease III [Chlamydophila abortus S26/3] gi|81312866|sp|Q5L6E3|RNC_CHLAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|62148031|emb|CAH63783.1| ribonuclease III [Chlamydophila abortus S26/3] Length = 237 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 3/215 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E ++ + F LL ALTH S + + E ERLEFLGD +L L+++ LF F S Sbjct: 10 VEAKLNFTFTQPKLLVTALTHPSYRNETATITEDSERLEFLGDAVLCLIVTEHLFLLFPS 69 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG LS +L++A +C Q L L ++ + R TS A++ E+++ A Sbjct: 70 MDEGTLSTARAALINAVSCCQYTDALGLGEYLLIGKGERIQNERGKTSAYANLFEAILGA 129 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +YLDGG+ A + + K LQ+ P Y+ + P Sbjct: 130 VYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKHLRTLPVYQYEPWTSPQG 189 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + V ++ +G SK+ AE++AA + L Sbjct: 190 ASGYHIRVLVNHEVWGEGFALSKKEAEKLAAQQAL 224 >gi|257866576|ref|ZP_05646229.1| ribonuclease III [Enterococcus casseliflavus EC30] gi|257872908|ref|ZP_05652561.1| ribonuclease III [Enterococcus casseliflavus EC10] gi|257876180|ref|ZP_05655833.1| ribonuclease III [Enterococcus casseliflavus EC20] gi|325567330|ref|ZP_08143997.1| ribonuclease III [Enterococcus casseliflavus ATCC 12755] gi|257800534|gb|EEV29562.1| ribonuclease III [Enterococcus casseliflavus EC30] gi|257807072|gb|EEV35894.1| ribonuclease III [Enterococcus casseliflavus EC10] gi|257810346|gb|EEV39166.1| ribonuclease III [Enterococcus casseliflavus EC20] gi|325158763|gb|EGC70909.1| ribonuclease III [Enterococcus casseliflavus ATCC 12755] Length = 230 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 7/211 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFD 64 L+++ F + LLE+A THSS + ++ + ERLEFLGD +L L++S L+ Sbjct: 9 LKEKFDIVFHDVDLLEQAFTHSSYVNEHRNLHLSDNERLEFLGDAVLELIVSRYLYRELP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ ++V ++ S A++ +IR+ S+ D+ E+ + Sbjct: 69 DLPEGKLTKLRAAIVREDSLSMFAKDCRFDEYIRLGKGEENSGGRKRPSLLCDLFEAFLG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G+E F+ K + +K+G F D KT LQE V+ Y++ +G Sbjct: 129 ALYLDQGLESVSGFLTKVVFPK-VKAGAFSHEMDHKTRLQEVLQRGGDVSINYRLIKEAG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 P H+ F V +G SK+ +EQ Sbjct: 188 PAHERIFWTEVYCDDTLIGKGQGKSKKLSEQ 218 >gi|227548991|ref|ZP_03979040.1| ribonuclease III [Corynebacterium lipophiloflavum DSM 44291] gi|227078942|gb|EEI16905.1| ribonuclease III [Corynebacterium lipophiloflavum DSM 44291] Length = 254 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/200 (34%), Positives = 100/200 (50%), Gaps = 7/200 (3%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +L ALTH S + H + ERLEFLGD +LGL ++ L+ F S E ++S S+V Sbjct: 39 ILRLALTHRSFANEHGPLPNNERLEFLGDAVLGLSVANSLYERFPSRPESDISKMRASIV 98 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + VARE+ L + + + SI AD E+L A+Y G E A V Sbjct: 99 SRYGLADVAREIGLGAHVLLGRGEEVTGGRDKDSILADTTEALFGAIYRQHGFEPARDVV 158 Query: 140 DKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + ++ + A +G+ +D KT LQE EY+ T GPDHD FT V + Sbjct: 159 LRLFESKLESATATGRH-QDWKTVLQERLAELKAPAAEYRAT-SVGPDHDQTFTADVFVG 216 Query: 197 GLAPAQGMDCSKRAAEQVAA 216 + +G+ +K+ AEQ AA Sbjct: 217 EDSRGRGVGPNKKLAEQEAA 236 >gi|317495799|ref|ZP_07954162.1| ribonuclease III [Gemella moribillum M424] gi|316913976|gb|EFV35459.1| ribonuclease III [Gemella moribillum M424] Length = 237 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 100/206 (48%), Gaps = 9/206 (4%) Query: 26 ALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 A +HSS ++ + +YERLEFLGD ++ L S LF F EGEL+ S+V Sbjct: 30 AFSHSSYTNEKKIAKHLNYERLEFLGDAVVELTTSEFLFKKFPKLAEGELTKLRASIVCE 89 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 +T + A +L+L I + K ++ AD+ ES ALYL+ +E F++ Sbjct: 90 KTLVKYALQLNLDKCIYLGRGEEKMGGRSRAALLADIFESFTGALYLETNLETVKIFLNN 149 Query: 142 --YWKQRALKSGKFRRDAKTELQEWAHA-KFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + + + F D KT LQE+ K G EYKV GP H F VEI G Sbjct: 150 TLFTEVEDYEYSSF-VDYKTILQEYVFKIKLG-EIEYKVLDSIGPSHSKTFISAVEIDGK 207 Query: 199 APAQGMDCSKRAAEQVAAAEVLKREG 224 G +K+ +EQ++A + L + G Sbjct: 208 QYGSGTAATKKESEQLSAKQALDKLG 233 >gi|213964554|ref|ZP_03392754.1| ribonuclease III [Corynebacterium amycolatum SK46] gi|213952747|gb|EEB64129.1| ribonuclease III [Corynebacterium amycolatum SK46] Length = 242 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 106/218 (48%), Gaps = 6/218 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLF 60 A+ ++ L ++G SL + ALTH S ++ + ERLEFLGD +LG+ ++ L+ Sbjct: 19 AVDHAPLLDKLGVELPEESL-KLALTHRSFANENGMLTNNERLEFLGDAVLGVCVAEELY 77 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F E ++S +V+ + +AR + L I + + + SI AD E Sbjct: 78 RRFPDRAEQDISKMRAGVVNMYALADLARSIGLGEHILLGRGEKATGGADKHSILADTTE 137 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +L+ A+YL G EVA V + + Q + RD KT LQE AK EY V Sbjct: 138 ALLGAIYLQHGFEVARETVLRLFNQMIDDAPTESRGRDWKTLLQERLAAKQLPAAEYTVR 197 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +GPDHD F V V + G+ G +K+ AE AA Sbjct: 198 -TTGPDHDLTFYVDVLVDGVVKGSGTGATKKEAEMHAA 234 >gi|172038048|ref|YP_001804549.1| ribonuclease III [Cyanothece sp. ATCC 51142] gi|171699502|gb|ACB52483.1| ribonuclease III [Cyanothece sp. ATCC 51142] Length = 242 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 109/204 (53%), Gaps = 7/204 (3%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N LL+ ALTH +IS + +Y++LEF+GD ++ L+ + +L + GE + + L Sbjct: 30 NLELLDLALTHPTISR--ETNYQQLEFVGDSVIRLVSAEILLETYPDELVGEFAAIRSIL 87 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGT 137 VS T ++ A + L ++ ++ + +D ++ + AD E+++ ALYL + + Sbjct: 88 VSDRTLAEFAEQYGLDRYLLMADSVAQDTMGRVSWL-ADAFEAVLGALYLSTKNMTLVRP 146 Query: 138 FVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVE 194 ++D ++A ++S R++ K LQEW A++ + P+Y+VT + HD RF V Sbjct: 147 WLDPLLLKKAAEIRSDPARQNYKDALQEWTQAQYKILPDYRVTEQHKDRGHDERFFAEVS 206 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAE 218 + G SK+ AEQ AA + Sbjct: 207 LKDRKLGSGYGRSKKMAEQAAAKD 230 >gi|314936605|ref|ZP_07843952.1| ribonuclease III [Staphylococcus hominis subsp. hominis C80] gi|313655224|gb|EFS18969.1| ribonuclease III [Staphylococcus hominis subsp. hominis C80] Length = 243 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 11/214 (5%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSA 66 K +G ++ + + ++A +HSS + + ERLEFLGD +L L +S LF+ + + Sbjct: 21 KMLGLSYTHVDVYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLFDKYPNL 80 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ ++V + A +++L I + K S+ +D E+ I AL Sbjct: 81 PEGNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKTGGRTRPSLVSDAFEAFIGAL 140 Query: 127 YLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 YLD G+EV F K Y + L D KT+ QE+ H++ Y + G Sbjct: 141 YLDQGLEVVWKFAQKVIFPYVEHNELIG---VVDFKTQFQEYIHSQSKGDVTYHLIKEEG 197 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 P H FT V + A A+G +K+ +EQ AA Sbjct: 198 PAHHRLFTSEVILENKAIAKGQGRTKKESEQKAA 231 >gi|228474955|ref|ZP_04059683.1| ribonuclease III [Staphylococcus hominis SK119] gi|228270940|gb|EEK12328.1| ribonuclease III [Staphylococcus hominis SK119] Length = 243 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 11/214 (5%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSA 66 K +G ++ + + ++A +HSS + + ERLEFLGD +L L +S LF+ + + Sbjct: 21 KMLGLSYTHLDVYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLFDKYPNL 80 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ ++V + A +++L I + K S+ +D E+ I AL Sbjct: 81 PEGNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKTGGRTRPSLVSDAFEAFIGAL 140 Query: 127 YLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 YLD G+EV F K Y + L D KT+ QE+ H++ Y + G Sbjct: 141 YLDQGLEVVWKFAQKVIFPYVEHNELIG---VVDFKTQFQEYIHSQSKGDVTYHLIKEEG 197 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 P H FT V + A A+G +K+ +EQ AA Sbjct: 198 PAHHRLFTSEVILENKAIAKGQGRTKKESEQKAA 231 >gi|269838233|ref|YP_003320461.1| ribonuclease III [Sphaerobacter thermophilus DSM 20745] gi|269787496|gb|ACZ39639.1| ribonuclease III [Sphaerobacter thermophilus DSM 20745] Length = 259 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 99/210 (47%), Gaps = 12/210 (5%) Query: 11 KRIGYAFANRSLLEKALTHSS------ISH--SYQESYERLEFLGDRILGLLISTLLFNH 62 +R+G F + LL ALTH S IS + ++S ERLEFLGD +LG++ + L+ Sbjct: 24 QRLGIEFRDLDLLRLALTHRSYLNELGISQIEAVRDSNERLEFLGDSVLGMITAEFLYRR 83 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ +LV ET ++ AR L + + I A E++ Sbjct: 84 FPRLPEGMLTAYRTALVRTETLARWARRFGLDELLYLGRGEITADGEIRDRILAGAFEAV 143 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 IAA+YLD GI F+ + + A + G+ + K LQE VTP Y+ Sbjct: 144 IAAIYLDRGIRATRRFLRQLLIEDAEQIITEGQ-ETNYKGRLQELVQEHMRVTPMYRTVA 202 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SGP HD FTV V + G G SKR Sbjct: 203 VSGPAHDRVFTVEVVVGGECLGVGTGSSKR 232 >gi|239636288|ref|ZP_04677290.1| ribonuclease III [Staphylococcus warneri L37603] gi|239597643|gb|EEQ80138.1| ribonuclease III [Staphylococcus warneri L37603] Length = 243 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 11/218 (5%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ + N L ++A +HSS + + + ERLEFLGD +L L +S LF+ E Sbjct: 24 LGFEYNNIELYQQAFSHSSFINDFNMDRLDHNERLEFLGDAVLELTVSRYLFDKHPDLPE 83 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ ++V + A ++ L I + K S+ +D E+ + ALYL Sbjct: 84 GNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYL 143 Query: 129 DGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D G++ F DK Y + L D KT+ QE+ H + Y++ GP Sbjct: 144 DQGLDTVWDFADKIIFPYVEDDELDG---VVDFKTQFQEFVHRQNKGDVTYRLIKEEGPA 200 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H FT V + A A+G +K+ +EQ AA K+ Sbjct: 201 HHRLFTSEVILEKQAIAEGQGKTKKESEQKAAERAYKQ 238 >gi|47225092|emb|CAF98719.1| unnamed protein product [Tetraodon nigroviridis] Length = 290 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 96/190 (50%), Gaps = 10/190 (5%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 +R+EFLGD I+ L+ + LF HF EG L++ +SLV+ T ++VA EL + F ++ Sbjct: 61 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-IT 119 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DA 157 +D K T AD++ES IAALY+D +E TF++ + R LK + D Sbjct: 120 NDKTKRPVVLRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDP 178 Query: 158 KTELQEWA-----HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 K++LQ+ K P YK GP H +TV V G G S + AE Sbjct: 179 KSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGDRIGCGKGPSIQQAE 238 Query: 213 QVAAAEVLKR 222 AA + L++ Sbjct: 239 MGAAMDALEK 248 >gi|229820101|ref|YP_002881627.1| ribonuclease III [Beutenbergia cavernae DSM 12333] gi|229566014|gb|ACQ79865.1| ribonuclease III [Beutenbergia cavernae DSM 12333] Length = 252 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 73/215 (33%), Positives = 106/215 (49%), Gaps = 8/215 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + +E+R+G + L A TH S +H + ERLEFLGD +LG++I+ LF Sbjct: 18 AAVEERLGVGI-DPELAVLAFTHRSFAHEAGGIPTNERLEFLGDSVLGVVITDHLFRSRP 76 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGEL+ + VS + VAREL L + + SI +D +E++I Sbjct: 77 DSSEGELAKMRAACVSQRALAVVARELRLGEHLLLGKGESATGGRDKDSILSDTLEAVIG 136 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGV-TPEYKVTFRS 181 A+YL G+EV + + + + D KT LQE + A+ G+ P Y V Sbjct: 137 AVYLTNGLEVVRDVLLRLLGPSLAVAAELGAGLDWKTSLQELS-AELGLGAPLYDVDG-V 194 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDHD RFT V I+ G +K+ AEQ AA Sbjct: 195 GPDHDRRFTAHVVIAERVWGSGTGSAKKHAEQEAA 229 >gi|94469424|gb|ABF20201.1| ribonuclease III [Ehrlichia ruminantium] Length = 145 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 77/137 (56%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 ++A+ ++L FI +S R + ++ + +E+LI A+YLDGG++ A F+ + K Sbjct: 3 EIAQSINLGIFIIMSDGERSCGGAKNSNNLENALEALIGAIYLDGGLKAAKDFIFLFRKN 62 Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 A +DAKT LQEWA +K P Y + +SGPDH+P FTV V I Sbjct: 63 SATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATG 122 Query: 206 CSKRAAEQVAAAEVLKR 222 +K+ AEQ AA+ +L++ Sbjct: 123 HNKKLAEQKAASLMLEK 139 >gi|297571639|ref|YP_003697413.1| ribonuclease III [Arcanobacterium haemolyticum DSM 20595] gi|296931986|gb|ADH92794.1| ribonuclease III [Arcanobacterium haemolyticum DSM 20595] Length = 235 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 6/199 (3%) Query: 22 LLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LL ALTH S + ++ + ERLEF+GD ILG +++ +F+ + EGELS ++ VS Sbjct: 21 LLTLALTHRSWAFEHECGNNERLEFMGDSILGAVVAEQIFHDYPEKSEGELSKIKSAAVS 80 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + +AR L+L ++IR+ + SI AD VE+LIAA Y GG+ V + V Sbjct: 81 ERALAGIARGLNLGAYIRLGKGEERTGGRDKDSILADTVEALIAATYEAGGLRVVISTVR 140 Query: 141 KYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF-RSGPDHDPRFTVVVEISG 197 + + +++ + D +T ++E A + G+ E T GPDH +T V I Sbjct: 141 HHLHAKIIEATQMGPALDWRTGMEEKAR-ELGIAGELSYTIVGEGPDHAKVYTARVFIGE 199 Query: 198 LAPAQGMDCSKRAAEQVAA 216 +G D + R A ++AA Sbjct: 200 TEWGRG-DATSRKASKLAA 217 >gi|182414805|ref|YP_001819871.1| ribonuclease III [Opitutus terrae PB90-1] gi|177842019|gb|ACB76271.1| Ribonuclease III [Opitutus terrae PB90-1] Length = 250 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 70/216 (32%), Positives = 104/216 (48%), Gaps = 6/216 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L+ R+ Y F + +LLE+A+TH+S + ES +RLEFLGD +L L+++ LF F Sbjct: 25 AALQTRLIYTFRDPALLERAVTHTSYLPENPDIAESNQRLEFLGDAVLQLILTEALFELF 84 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +EG LS R +L ++AREL L + + S +S D E+L+ Sbjct: 85 PGDREGPLSRRRAALTKGAFLVELARELQLDRCLLLGSSEEASGGRTRSSALEDAFEALV 144 Query: 124 AALYLDGGIEVAGTFV-DKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTP-EYKVTFR 180 ALYLD + + V Y + SG + K LQE ++G Y+VT Sbjct: 145 GALYLDSDLALTRRIVLGLYGDLPSRLSGVVNEENPKGRLQELIQPEYGNQALRYEVTGI 204 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 G DH + V V + G SK+ AE+ AA Sbjct: 205 EGEDHARAYEVAVFLHDRVLGSGRGPSKKLAEEAAA 240 >gi|313224789|emb|CBY20581.1| unnamed protein product [Oikopleura dioica] Length = 538 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 11/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNH 62 R + LE+ +G F N LL KALT ++ ++ + +RLEFLGD I L + LF H Sbjct: 210 RCAELEELLGVKFKNIRLLAKALTLKNVKYNDITKGHNQRLEFLGDAICNFLAAEYLFKH 269 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ ++V A T + VA+++ L F+ L D + I AD++ES Sbjct: 270 FPLHHEGHLTLLRCTMVGAPTQALVAQQIGLDKFVISRQSLSHDKMGWKQKILADLMESF 329 Query: 123 IAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVT--PEY 175 I AL++D GI F V Y + + + D K+ LQ+ + G PEY Sbjct: 330 IGALFIDRGIIAVDVFMKVAFYPRLKHFIMSQVWNDPKSCLQQCCLTLRPEEGTPDLPEY 389 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + T + R+ V V G +G S + AE+ AA + L++ Sbjct: 390 RTTTSNSSKM--RYRVEVFFRGERIGEGHGPSIQLAEKFAARKALEK 434 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 59/97 (60%), Gaps = 8/97 (8%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRV 99 ER EFLGD +LG ++S +F+ F + EG LS+ +LV + +A++L L F+ + Sbjct: 70 ERPEFLGDAVLGFVVSVSIFHLFPNLGEGALSMLRCALVCNVHLAALAQKLTLEDYFVYI 129 Query: 100 -SSDL--RKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S DL R+D + + A+ E+++ A+Y+DGG+E Sbjct: 130 HSQDLAKRED----LNNALANCFEAVLGAIYMDGGLE 162 >gi|197294673|ref|YP_001799214.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma australiense] gi|171854000|emb|CAM11965.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma australiense] Length = 222 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 108/216 (50%), Gaps = 9/216 (4%) Query: 11 KRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 K++ N +L KALTHSS S+ QE+ ERLEFLGD I+GLL++ L+ + Sbjct: 8 KKLNIVPKNIALYRKALTHSSYSNEKEFLQENNERLEFLGDAIIGLLMADYLYQK-NKEN 66 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQADVVESLIAAL 126 EG ++ + V ++ + A+ ++L +++ + + KD + SI AD E+L A+ Sbjct: 67 EGVMTKKRAQAVCEKSLTIYAKSINLQNYLFLGKGEKNKDFNT--KSIIADAFEALFGAI 124 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLD G A + K+ D KT+LQE ++ + +YK+ GP H Sbjct: 125 YLDLGYNSAKKVFQRLVIPHLPKAIDI-IDFKTQLQEIVQSEKKII-QYKIVSEEGPAHS 182 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +F V + G +K+ AEQ AA E L + Sbjct: 183 KKFIAEVYLDKKILGSGEGTTKKEAEQKAAQEALSK 218 >gi|321309555|ref|YP_004191884.1| ribonuclease III [Mycoplasma haemofelis str. Langford 1] gi|319801399|emb|CBY92045.1| ribonuclease III [Mycoplasma haemofelis str. Langford 1] Length = 229 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 13/219 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L K G +++L KA THSS + +++ YE+LEFLGD ++GL I++ LF Sbjct: 11 LNKSFGLTIKDKNLFTKAFTHSSYKGCNPNFKGDYEKLEFLGDSVIGLSIASELFKR--D 68 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 G +S + +VS + + V R+LD ++IRV + C SI DV E+ I A Sbjct: 69 ISLGAISTSKDQIVSGSSLAYVGRKLDFHNYIRVGN----SCCVISDSIIEDVYEAFIGA 124 Query: 126 LYLDGGIEVAGTFV-DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV--TFRSG 182 +Y + G E A V W + F D KT+L K+ Y + +F S Sbjct: 125 VYCEFGFETARKIVLSSLWNYFLMGELDFYFDYKTKLNTLVGQKYKGKVTYTLIDSFPS- 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 D F V + + + G+ + + AEQ AA + L Sbjct: 184 KDGSTTFKVSASWNNDSLSIGLGTTLKKAEQAAAQDALN 222 >gi|308494532|ref|XP_003109455.1| CRE-DRSH-1 protein [Caenorhabditis remanei] gi|308246868|gb|EFO90820.1| CRE-DRSH-1 protein [Caenorhabditis remanei] Length = 1073 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 16/225 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63 + LE + F N LL KA T ++ H+ + +RLE+LGD +L L++S LF + Sbjct: 821 FHKLENILNIKFNNIRLLAKAFTRRNVPHNDLTKGHNQRLEWLGDSVLQLVVSDYLFRRY 880 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG +S+ SLVS +T S V +L F+ +AD+VE+ I Sbjct: 881 PLHHEGHMSLLRTSLVSNQTQSVVCDDLGFLEFVVKPP---HKTPELKMKDKADLVEAFI 937 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEW------AHAKFGVTPE 174 ALY+D GIE +F+ + R + S ++ DAK+ LQ+W A P+ Sbjct: 938 GALYVDRGIEHCRSFIRIVFCPRLKHFINSEQW-NDAKSHLQQWCLAIRDAQNPNPAMPD 996 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 Y++ GP ++ F V V G A + + AE + AAE+ Sbjct: 997 YRILSIEGPTNNRIFKVGVYFRGKRLASAAESNVHKAE-LKAAEI 1040 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 4/94 (4%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLE+LGD ++ L++S L+ EG L+ +LV + +A+ + ++ + Sbjct: 679 ERLEYLGDAVVELIVSHHLYFMLPHHFEGGLATYRTALVQNRNLADLAKNCRIDEMLQYA 738 Query: 101 --SDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +DL + + A+ E+++AA+YLDGG+ Sbjct: 739 HGADLINE--AEWKHALANAFEAVVAAVYLDGGL 770 >gi|298245671|ref|ZP_06969477.1| ribonuclease III [Ktedonobacter racemifer DSM 44963] gi|297553152|gb|EFH87017.1| ribonuclease III [Ktedonobacter racemifer DSM 44963] Length = 251 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 14/227 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE + F +RSLL +A+TH S + ++SY+ LEFLGD I+ + ++ F +A Sbjct: 13 LEALLQVTFHDRSLLLRAITHHSCCTETALRDSYDTLEFLGDAIISAHVVEYIYRSFPNA 72 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTSIQADVVESLIAA 125 EG+++ + +VS + + ++L L FIRV ++LR S+ ADV+E+L+ A Sbjct: 73 SEGDMTALKSEVVSRRVFALIGQQLGLFPFIRVDIANLRTFNERSRDSLCADVLEALVGA 132 Query: 126 LYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +++D G EVA FV + +Q ++++ + K LQ+ + G P Y+V +S Sbjct: 133 IHIDQGSEVARDFVARAILPMVEQISVQADT---NPKGRLQKIILQRTGSLPRYRVLEQS 189 Query: 182 GPDHDPRFTVVV----EISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G ++D F V V + GL A + + R A + A + K+ G Sbjct: 190 GRNNDRIFLVGVYDQETLLGLGKASSIKEAGRLAAREALEALQKQRG 236 >gi|70726682|ref|YP_253596.1| ribonuclease III [Staphylococcus haemolyticus JCSC1435] gi|90101647|sp|Q4L5T5|RNC_STAHJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|68447406|dbj|BAE04990.1| ribonuclease III [Staphylococcus haemolyticus JCSC1435] Length = 245 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 11/214 (5%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSA 66 +G+ ++N L ++A +HSS + + ERLEFLGD +L L +S LF+ Sbjct: 22 NELGFTYSNIDLYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLFDKHPDL 81 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ ++V + A +++L I + K S+ +D E+ + AL Sbjct: 82 PEGNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKTGGRTRPSLVSDAFEAFVGAL 141 Query: 127 YLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 YLD G++V F +K Y + L D KT+ QE+ H++ Y++ G Sbjct: 142 YLDQGLDVVWQFAEKVIFPYVEDDELVG---VVDFKTQFQEYVHSQNRGDVTYRLIKEEG 198 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 P H FT V + A A G +K+ +EQ AA Sbjct: 199 PAHHRLFTSEVILENEAVATGQGKTKKESEQKAA 232 >gi|124004144|ref|ZP_01688990.1| ribonuclease III [Microscilla marina ATCC 23134] gi|123990214|gb|EAY29713.1| ribonuclease III [Microscilla marina ATCC 23134] Length = 248 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 20/216 (9%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IG+ N +L + AL+H+S S S Q ES ERLE+LGD ILG +++ LF + +E Sbjct: 28 IGHKPFNLALYQLALSHTSASKSLQDGFKESNERLEYLGDAILGAIVADYLFKKYPFKEE 87 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ +V+ E+ +Q++R++ + IR + + + S+ D +E+L+ A+YL Sbjct: 88 GFLTEIRARIVNRESLNQLSRKMGIQDLIRYEGNPKSNFT--YKSMGGDALEALVGAVYL 145 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF--------RRDAKTELQEWAHAKFGVTPEYKVTFR 180 D G FV R + G ++ K+ + EWA K ++++ Sbjct: 146 DKGFHYCRKFV-----VRKIVLGHLDLDDIIENNQNYKSIIIEWAQ-KNNRDLKFEIVRE 199 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 G H +F V I A+G SK+ AEQ AA Sbjct: 200 EGSKHQRQFIAQVIIDDEPVAKGSGFSKKKAEQAAA 235 >gi|315038614|ref|YP_004032182.1| ribonuclease III [Lactobacillus amylovorus GRL 1112] gi|312276747|gb|ADQ59387.1| ribonuclease III [Lactobacillus amylovorus GRL 1112] Length = 228 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/194 (34%), Positives = 95/194 (48%), Gaps = 11/194 (5%) Query: 17 FANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N LLE+A THSS S+ + ++ YE+LEFLGD +L L +S L+ H+ EGEL+ Sbjct: 18 FNNEKLLEEAFTHSSYSNEHPDAGIRDYEKLEFLGDAVLELAVSNYLYRHYPKLNEGELT 77 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +++V E S+ A E I + + K ++ DV E+ ALYLD G+ Sbjct: 78 RLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARNRKTLLEDVFEAFNGALYLDQGM 137 Query: 133 EVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRF 189 F+ + G+F RD KT+LQE V EY V S P H F Sbjct: 138 PAVEHFL-HLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVNIEYSVISESQLPSH---F 193 Query: 190 TVVVEISGLAPAQG 203 V ++I+ A +G Sbjct: 194 EVELKINDEAKTRG 207 >gi|169630337|ref|YP_001703986.1| ribonuclease III [Mycobacterium abscessus ATCC 19977] gi|169242304|emb|CAM63332.1| Ribonuclease III Rnc [Mycobacterium abscessus] Length = 258 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 9/210 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 R+ L IG + LL ALTH S ++ + ERLEFLGD +LGL I+ L++ Sbjct: 8 RHDDLRAAIGVQLGDE-LLTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITETLYHS 66 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVV 119 EG+L+ S+V+ + + VAR L L + + + +SI AD + Sbjct: 67 HPDRSEGDLAKLRASIVNTQALAGVARGLTGDGLGAHLLLGKGEENTGGRDKSSILADGM 126 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 ES++ A+YL+ G+E A V + + + K D KT LQE K P Y V Sbjct: 127 ESILGAVYLEHGLETARAVVLTLFGELLETAPKLGAGLDWKTSLQELTAEKGWGAPSYAV 186 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 T +GPDHD FT V ++ A G+ S Sbjct: 187 T-STGPDHDKEFTATVMVNDTAHGVGVGRS 215 >gi|325957095|ref|YP_004292507.1| ribonuclease III [Lactobacillus acidophilus 30SC] gi|325333660|gb|ADZ07568.1| ribonuclease III [Lactobacillus acidophilus 30SC] gi|327183818|gb|AEA32265.1| ribonuclease III [Lactobacillus amylovorus GRL 1118] Length = 228 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/194 (34%), Positives = 95/194 (48%), Gaps = 11/194 (5%) Query: 17 FANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N LLE+A THSS S+ + ++ YE+LEFLGD +L L +S L+ H+ EGEL+ Sbjct: 18 FNNEKLLEEAFTHSSYSNEHPDAGIRDYEKLEFLGDAVLELAVSNYLYRHYPKLNEGELT 77 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +++V E S+ A E I + + K ++ DV E+ ALYLD G+ Sbjct: 78 RLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARSRKTLLEDVFEAFNGALYLDQGM 137 Query: 133 EVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRF 189 F+ + G+F RD KT+LQE V EY V S P H F Sbjct: 138 PAVEHFL-HLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVNIEYSVISESQLPSH---F 193 Query: 190 TVVVEISGLAPAQG 203 V ++I+ A +G Sbjct: 194 EVELKINDEAKTRG 207 >gi|188593372|emb|CAP07635.1| drosha protein [Oikopleura dioica] Length = 1096 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 11/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNH 62 R + LE+ +G F N LL KALT ++ ++ + +RLEFLGD I L + LF H Sbjct: 768 RCAELEELLGVKFKNIRLLAKALTLKNVKYNDITKGHNQRLEFLGDAICNFLAAEYLFKH 827 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ ++V A T + VA+++ L F+ L D + I AD++ES Sbjct: 828 FPLHHEGHLTLLRCTMVGAPTQALVAQQIGLDKFVISRQSLSHDKMGWKQKILADLMESF 887 Query: 123 IAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVT--PEY 175 I AL++D GI F V Y + + + D K+ LQ+ + G PEY Sbjct: 888 IGALFIDRGIIAVDVFMKVAFYPRLKHFIMSQVWNDPKSCLQQCCLTLRPEEGTPDLPEY 947 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + T + R+ V V G +G S + AE+ AA + L++ Sbjct: 948 RTTTSNSSKM--RYRVEVFFRGERIGEGHGPSIQLAEKFAARKALEK 992 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 60/97 (61%), Gaps = 8/97 (8%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRV 99 ER EFLGD +LG ++S +F+ F + EG LS+ +LV + +A++L L F+ + Sbjct: 628 ERPEFLGDAVLGFVVSVSIFHLFPNLGEGALSMLRCALVCNVHLAALAQKLTLEDYFVYI 687 Query: 100 -SSDL--RKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S DL R+D+ + + A+ E+++ A+Y+DGG+E Sbjct: 688 HSQDLAKREDLNNAL----ANCFEAVLGAIYMDGGLE 720 >gi|116074432|ref|ZP_01471694.1| putative ribonuclease III [Synechococcus sp. RS9916] gi|116069737|gb|EAU75489.1| putative ribonuclease III [Synechococcus sp. RS9916] Length = 247 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 7/205 (3%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +L+++ALTH+S ++ERLEFLGD +L L S + H GE S LVS Sbjct: 40 ALVDEALTHTSTGRHI--NHERLEFLGDAVLRLAASEYIEQHHPQLPVGERSALRAQLVS 97 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFV 139 + + + + + + + R D + T ++A+ E+LI ALY G IE +++ Sbjct: 98 DRWLAALGDSIGIEAVQTIGAKARGDDAARAT-LRAEATEALIGALYQGWGSIEPVHSWL 156 Query: 140 DKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEIS 196 +W++ A+ + + +AK+ LQEW+ A+ P Y +S DP RF VE+ Sbjct: 157 TPHWQRTSAAVLADPHKGNAKSALQEWSQARKLGLPTYCSEEQSQRHGDPKRFRCQVELQ 216 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLK 221 G A+G S+R AEQ AA L+ Sbjct: 217 GKTLAEGWGGSRRDAEQRAAQAALQ 241 >gi|53711509|ref|YP_097501.1| ribonuclease III [Bacteroides fragilis YCH46] gi|81383900|sp|Q64ZV9|RNC_BACFR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|52214374|dbj|BAD46967.1| ribonuclease III [Bacteroides fragilis YCH46] Length = 290 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 13/225 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 YS + +G+ N L E+AL H S + ++ + ERLEFLGD IL ++ +++ Sbjct: 20 YSCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF+ +EG L+ + +V ET +++A E+ L I+ S+ S + + + E+ Sbjct: 80 HFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178 I A+YLD G E F+++ + + K R + K++L EW+ K + +++ Sbjct: 136 FIGAIYLDRGYECCKQFMERRIIEPYIDLDKLSRKEVNFKSKLIEWSQ-KNKMEVSFELI 194 Query: 179 FRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +S +++P F V I G+ G SK+ ++Q AA LK+ Sbjct: 195 EQSLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMTLKK 239 >gi|300868781|ref|ZP_07113390.1| ribonuclease III [Oscillatoria sp. PCC 6506] gi|300333217|emb|CBN58582.1| ribonuclease III [Oscillatoria sp. PCC 6506] Length = 237 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 107/204 (52%), Gaps = 15/204 (7%) Query: 5 RYSTLEK---RIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 R LEK ++G NR LL+ ALTH + S Q +YE+LEF+GD ++ L S L Sbjct: 8 RQKELEKLVEKLGLPDRNRVNWQLLDLALTHPTAST--QANYEQLEFIGDAVVRLAASEL 65 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + + GE + + LVS T +Q+A ++ VSS D + + AD Sbjct: 66 LFETYPGSSVGEFAAIRSLLVSDRTLAQIADSYGFGRYLIVSSSAACDKAGEESRL-ADA 124 Query: 119 VESLIAALYLD-GGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY 175 E+++AALYL +++ ++D +++ RA + S R++ K LQEW ++ + PEY Sbjct: 125 FEAVLAALYLSTNTLQLIRPWLDPHFQPRAAQILSDPARQNYKAALQEWTQGQYKILPEY 184 Query: 176 KVTFRSGPDH--DPRFTVVVEISG 197 V +G H + RFT V + G Sbjct: 185 NVK-ETGRVHGEEERFTAEVWLRG 207 >gi|265764902|ref|ZP_06093177.1| ribonuclease III [Bacteroides sp. 2_1_16] gi|263254286|gb|EEZ25720.1| ribonuclease III [Bacteroides sp. 2_1_16] Length = 290 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 13/225 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 YS + +G+ N L E+AL H S + ++ + ERLEFLGD IL ++ +++ Sbjct: 20 YSCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF+ +EG L+ + +V ET +++A E+ L I+ S+ S + + + E+ Sbjct: 80 HFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178 I A+YLD G E F+++ + + K R + K++L EW+ K + +++ Sbjct: 136 FIGAIYLDRGYECCKQFMERRIIEPYIDLDKLSRKEVNFKSKLIEWSQ-KNKMEVSFELI 194 Query: 179 FRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +S +++P F V I G+ G SK+ ++Q AA LK+ Sbjct: 195 EQSLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMTLKK 239 >gi|145296037|ref|YP_001138858.1| ribonuclease III [Corynebacterium glutamicum R] gi|140845957|dbj|BAF54956.1| hypothetical protein [Corynebacterium glutamicum R] Length = 247 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 103/207 (49%), Gaps = 5/207 (2%) Query: 20 RSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 R LL ALTH S ++ + ERLEFLGD +LGL ++ L+ + S+ E ++S S Sbjct: 36 RDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLSVANKLYEQYPSSPESDVSKMRAS 95 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 +VS + +ARE+DL + I + SI AD E+L+ A++ G E A Sbjct: 96 IVSRYGLADIAREIDLGNHILLGKGELLTEGRSKDSILADTTEALLGAIFRQHGFETARD 155 Query: 138 FVDKY--WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + + +K + +D KT LQE + EY T GPDHD FT +V + Sbjct: 156 VILRLFAYKIDNASARGIHQDWKTTLQEELAQRKRPMAEYSAT-SVGPDHDLVFTAIVTL 214 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G +G +K+ AEQ AA + ++ Sbjct: 215 EGEEMGRGEGPNKKLAEQEAARQAFRK 241 >gi|60679772|ref|YP_209916.1| putative ribonuclease III [Bacteroides fragilis NCTC 9343] gi|253564432|ref|ZP_04841889.1| ribonuclease 3 [Bacteroides sp. 3_2_5] gi|81317155|sp|Q5LIS2|RNC_BACFN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|60491206|emb|CAH05954.1| putative ribonuclease III [Bacteroides fragilis NCTC 9343] gi|251948208|gb|EES88490.1| ribonuclease 3 [Bacteroides sp. 3_2_5] gi|301161237|emb|CBW20775.1| putative ribonuclease III [Bacteroides fragilis 638R] Length = 290 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 13/225 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 YS + +G+ N L E+AL H S + ++ + ERLEFLGD IL ++ +++ Sbjct: 20 YSCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF+ +EG L+ + +V ET +++A E+ L I+ S+ S + + + E+ Sbjct: 80 HFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178 I A+YLD G E F+++ + + K R + K++L EW+ K + +++ Sbjct: 136 FIGAIYLDRGYECCKQFMERRIIEPYIDLDKLSRKEVNFKSKLIEWSQ-KNKMEVSFELI 194 Query: 179 FRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +S +++P F V I G+ G SK+ ++Q AA LK+ Sbjct: 195 EQSLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMTLKK 239 >gi|89895402|ref|YP_518889.1| hypothetical protein DSY2656 [Desulfitobacterium hafniense Y51] gi|89334850|dbj|BAE84445.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 262 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 16/222 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L KR+ + L ALTH S S E+ +RLEFLGD IL +++ L+ + Sbjct: 38 LAKRLELDESPNRLFTTALTHPSYLFENPQSGLENNQRLEFLGDAILDFVVAEYLYLSYP 97 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ ++V+ T ++ A+++ L + + + SI AD E+++ Sbjct: 98 ERPEGELTKMRAAVVNESTLARTAKKIRLGEELLLGKGEQVSGGRERPSILADAWEAIVG 157 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR-- 180 A+YL G + A V K+ + G + D KT LQE A + E +VT+R Sbjct: 158 AVYLQYGFQEARRVVLTLLKEEIAEVAQGNYG-DYKTMLQEKAQRE-----ETEVTYRIL 211 Query: 181 --SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDH+ RFT V + G +G+ +K+ AEQ AA +VL Sbjct: 212 AEEGPDHNKRFTAGVFLQGNLRGKGIGRTKKEAEQRAAQQVL 253 >gi|119962673|ref|YP_948196.1| ribonuclease III (RNase III) [Arthrobacter aurescens TC1] gi|119949532|gb|ABM08443.1| putative ribonuclease III (RNase III) [Arthrobacter aurescens TC1] Length = 236 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 97/205 (47%), Gaps = 6/205 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L KR+G + +L ALTH S ++ + ERLEFLGD ILG ++ L+ S Sbjct: 7 LLKRLGVSIDTETL-RLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDSLYRENPSL 65 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ R +++VS + + RE+ + FI + + SI AD +E+LI A Sbjct: 66 PEGELAKRRSAVVSTRALAGIGREIGVGEFIYLGQGEKLTDGKNKASILADTMEALIGAT 125 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YL IE A V + +G D KT +QE ++ Y V SGPD Sbjct: 126 YLSNDIETARQLVMRLVGPLLKDAGALGAGTDWKTSIQELTASRQLGAIHYAVEG-SGPD 184 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209 H F V+ I G +G SK+ Sbjct: 185 HARTFEAVLNIGGTPYGRGSGHSKK 209 >gi|209527991|ref|ZP_03276474.1| Ribonuclease III [Arthrospira maxima CS-328] gi|209491588|gb|EDZ91960.1| Ribonuclease III [Arthrospira maxima CS-328] Length = 246 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 108/202 (53%), Gaps = 12/202 (5%) Query: 5 RYSTLEK---RIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 R + LEK R+G + + LL+ ALTH S+S Q++YE+LEF+GD ++ L+ S L Sbjct: 12 RQNQLEKLIERLGLSTQQKIAWQLLDLALTHPSVST--QDNYEQLEFVGDSVVRLVASEL 69 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L + +A GE + + LVS ++++ L ++ V +D + + AD Sbjct: 70 LLETYPNAPVGEFAAVRSILVSDRILAEISNSYGLGRYLLVGGSATRDRLGEESRL-ADC 128 Query: 119 VESLIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEY 175 E+++AALYL +E+ ++D++ +RA + + R++ K LQEW + + + P+Y Sbjct: 129 FEAVLAALYLSTNTLELIRPWLDQHLLERATDIFNDPARQNYKAALQEWTQSCYKILPQY 188 Query: 176 KVTFRSGPDHDPRFTVVVEISG 197 KV + RFT V + G Sbjct: 189 KVNETGYAGDEARFTASVWLRG 210 >gi|227875300|ref|ZP_03993442.1| ribonuclease III [Mobiluncus mulieris ATCC 35243] gi|227844205|gb|EEJ54372.1| ribonuclease III [Mobiluncus mulieris ATCC 35243] Length = 261 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 10/200 (5%) Query: 22 LLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 LL A+TH S SH + ++ ERLEFLGD +L ++++ L+ +F EG L+ Sbjct: 30 LLVLAMTHRSFSHEHGKTGSRGTNERLEFLGDAVLQIIVTEYLYRNFPDEPEGTLAQMRA 89 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + VS ++VAR++ L ++R+ + SI +D +E+LI A +L G+ V Sbjct: 90 ATVSQTPLAEVARKIHLGEYLRLGVGEDRQGGRDKDSILSDTLEALIGATFLSCGLSVTR 149 Query: 137 TFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 V+++ + R L++ R D KT LQE A Y+V +GPDH F+ Sbjct: 150 VVVERHLR-RFLRNAPRRAVTLDWKTTLQELLSAADLGEVTYEVVA-TGPDHQKHFSAQA 207 Query: 194 EISGLAPAQGMDCSKRAAEQ 213 + G +G SK+ AE Sbjct: 208 LVEGENWGEGQGSSKKIAEH 227 >gi|189465040|ref|ZP_03013825.1| hypothetical protein BACINT_01384 [Bacteroides intestinalis DSM 17393] gi|189437314|gb|EDV06299.1| hypothetical protein BACINT_01384 [Bacteroides intestinalis DSM 17393] Length = 291 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 114/225 (50%), Gaps = 13/225 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y K +G+ N L ++AL H S S ++ + ERLEFLGD IL ++ +++ Sbjct: 20 YLCFYKILGFYPRNIQLYQQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGDIVYK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF+ +EG L+ + +V ET +++A E+ L ++ S+ S + + + E+ Sbjct: 80 HFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSA----RSSSHNSYMYGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAH-AKFGVTPEYKV 177 I A+YLD G + F+++ + + K R + K++L EW+ +K V+ E Sbjct: 136 FIGAIYLDQGYKRCKRFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQKSKVEVSFELIE 195 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F D++P F + I G+ +G SK+ ++Q AA LK+ Sbjct: 196 QFLD-EDYNPMFHTEIRIEGIPAGKGTGYSKKESQQNAAQAALKK 239 >gi|118470776|ref|YP_886758.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155] gi|118172063|gb|ABK72959.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155] Length = 230 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 111/226 (49%), Gaps = 15/226 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 ++ L + +G A LL ALTH S S+ + ERLEFLGD +LGL I+ L++ Sbjct: 5 HAALLEALGVALPAE-LLTIALTHRSYSYENGGLPTNERLEFLGDAVLGLTITEELYHRH 63 Query: 64 DSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+L+ S+V+ + + V R L L + + + + +SI AD VE Sbjct: 64 PDRAEGDLAKLRASIVNTQALADVGRGLTDEGLGAHLFLGKGEENSGGADKSSILADGVE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ-----RALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 SL+ A+YL+ G+ V + + + + L +G D K+ LQE A+ P Y Sbjct: 124 SLLGAIYLEHGLTVVREVILRLFGELLDTAPTLGAG---LDWKSSLQELTAARGLGAPAY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 VT +GPDHD F+ V I G+ +K+ AE AAA K Sbjct: 181 VVT-STGPDHDKEFSATVVIGEAEYGHGVGRTKKEAELKAAASAYK 225 >gi|269978187|ref|ZP_06185137.1| ribonuclease III [Mobiluncus mulieris 28-1] gi|306818562|ref|ZP_07452285.1| ribonuclease III [Mobiluncus mulieris ATCC 35239] gi|307700841|ref|ZP_07637866.1| ribonuclease III [Mobiluncus mulieris FB024-16] gi|269933696|gb|EEZ90280.1| ribonuclease III [Mobiluncus mulieris 28-1] gi|304648735|gb|EFM46037.1| ribonuclease III [Mobiluncus mulieris ATCC 35239] gi|307613836|gb|EFN93080.1| ribonuclease III [Mobiluncus mulieris FB024-16] Length = 269 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 10/200 (5%) Query: 22 LLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 LL A+TH S SH + ++ ERLEFLGD +L ++++ L+ +F EG L+ Sbjct: 38 LLVLAMTHRSFSHEHGKTGSRGTNERLEFLGDAVLQIIVTEYLYRNFPDEPEGTLAQMRA 97 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + VS ++VAR++ L ++R+ + SI +D +E+LI A +L G+ V Sbjct: 98 ATVSQTPLAEVARKIHLGEYLRLGVGEDRQGGRDKDSILSDTLEALIGATFLSCGLSVTR 157 Query: 137 TFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 V+++ + R L++ R D KT LQE A Y+V +GPDH F+ Sbjct: 158 VVVERHLR-RFLRNAPRRAVTLDWKTTLQELLSAADLGEVTYEVVA-TGPDHQKHFSAQA 215 Query: 194 EISGLAPAQGMDCSKRAAEQ 213 + G +G SK+ AE Sbjct: 216 LVEGENWGEGQGSSKKIAEH 235 >gi|330684635|gb|EGG96340.1| ribonuclease III [Staphylococcus epidermidis VCU121] Length = 235 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 11/212 (5%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ + N L ++A +HSS + + + ERLEFLGD +L L +S LF+ E Sbjct: 24 LGFEYNNIELYQQAFSHSSFINDFNMDRLDHNERLEFLGDAVLELTVSRYLFDKHPDLPE 83 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ ++V + A ++ L I + K S+ +D E+ + ALYL Sbjct: 84 GNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYL 143 Query: 129 DGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D G+++ F +K Y + L D KT+ QE+ H + Y++ GP Sbjct: 144 DQGLDIVWDFAEKIIFPYVEDDELDG---VVDFKTQFQEFVHRQNKGDVTYRLIKEEGPA 200 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 H FT V + A A+G +K+ +EQ AA Sbjct: 201 HHRLFTSEVILEKQAVAEGQGKTKKESEQKAA 232 >gi|255326576|ref|ZP_05367653.1| ribonuclease III [Rothia mucilaginosa ATCC 25296] gi|255296316|gb|EET75656.1| ribonuclease III [Rothia mucilaginosa ATCC 25296] Length = 229 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 108/220 (49%), Gaps = 12/220 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L KR+G + L +LTH S + + E ERLEFLGD +L L I+ ++ + Sbjct: 12 LRKRLGVDIDAETFL-LSLTHRSYAFENPGVEHNERLEFLGDSVLSLAIAEEVYRRYPDL 70 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL + +VS ++VAR+LDL +I + + SI AD +E++ Sbjct: 71 PEGELVKLHHVVVSTVALAKVARDLDLGRYILLGKGEIHTGGADKDSILADTMEAIFGLT 130 Query: 127 YLDGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 YL+ G E A V + ++ L SG RD KTEL A A+ Y+VT Sbjct: 131 YLECGREAARDLVLRLIAPLLDDEKVLNSG---RDWKTELLNLATARGWGDVRYEVTG-E 186 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDH +T V ++ G+ SK+ AE++AA + + Sbjct: 187 GPDHARVYTAVAIVANQQTGTGVGPSKKEAERLAAEQAYR 226 >gi|283457874|ref|YP_003362474.1| dsRNA-specific ribonuclease [Rothia mucilaginosa DY-18] gi|283133889|dbj|BAI64654.1| dsRNA-specific ribonuclease [Rothia mucilaginosa DY-18] Length = 229 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 108/220 (49%), Gaps = 12/220 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L KR+G + L +LTH S + + E ERLEFLGD +L L I+ ++ + Sbjct: 12 LRKRLGVDIDAETFL-LSLTHRSYAFENPGVEHNERLEFLGDSVLSLAIAEEVYRRYPDL 70 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL + +VS ++VAR+LDL +I + + SI AD +E++ Sbjct: 71 PEGELVKLHHVVVSTVALAKVARDLDLGRYILLGKGEIHTGGADKDSILADTMEAIFGLT 130 Query: 127 YLDGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 YL+ G E A V + ++ L SG RD KTEL A A+ Y+VT Sbjct: 131 YLECGREAARDLVLRLIAPLLDDEKVLNSG---RDWKTELLNLATARGWGDVRYEVTG-E 186 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDH +T V ++ G+ SK+ AE++AA + + Sbjct: 187 GPDHARVYTAVAIVANQQAGTGVGPSKKEAERLAAEQAYR 226 >gi|58337573|ref|YP_194158.1| ribonuclease III [Lactobacillus acidophilus NCFM] gi|227904215|ref|ZP_04022020.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus ATCC 4796] gi|75432899|sp|Q5FJJ7|RNC_LACAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|58254890|gb|AAV43127.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus NCFM] gi|227868234|gb|EEJ75655.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus ATCC 4796] Length = 228 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 96/204 (47%), Gaps = 11/204 (5%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62 + L+ F N LLE+A THSS S+ + + YE+LEFLGD +L L +S L+ H Sbjct: 8 NKLKNEYNIEFNNEKLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAVSNYLYRH 67 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EGEL+ +++V E S+ A E I + + K ++ DV E+ Sbjct: 68 YPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARNRKTLLEDVFEAF 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFR 180 AL+LD G+ F+ + G+F RD KT+LQE V EY V Sbjct: 128 NGALFLDQGMPAVERFL-HLTVYPLIAKGEFDDSRDYKTDLQELLQQNGPVNIEYSVISE 186 Query: 181 SG-PDHDPRFTVVVEISGLAPAQG 203 S P H F V ++I+ QG Sbjct: 187 SQLPSH---FVVELKINDQVQTQG 207 >gi|219669830|ref|YP_002460265.1| ribonuclease III [Desulfitobacterium hafniense DCB-2] gi|219540090|gb|ACL21829.1| Ribonuclease III [Desulfitobacterium hafniense DCB-2] Length = 262 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 16/222 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L KR+ L ALTH S S E+ +RLEFLGD IL +++ L+ + Sbjct: 38 LAKRLELDDPPNRLFTTALTHPSYLFENPQSGLENNQRLEFLGDAILDFVVAEYLYLSYP 97 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ ++V+ T ++ A+++ L + + + SI AD E+++ Sbjct: 98 ERPEGELTKMRAAVVNESTLARTAKKIRLGEELLLGKGEQVSGGRERPSILADAWEAIVG 157 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR-- 180 A+YL G + A V K+ + G + D KT LQE A + E +VT+R Sbjct: 158 AVYLQYGFQEARRVVLTLLKEEIAEVAQGNYG-DYKTMLQEKAQRE-----ETEVTYRIL 211 Query: 181 --SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDH+ RFT V + G +G+ +K+ AEQ AA +VL Sbjct: 212 AEEGPDHNKRFTAGVFLQGNLRGKGIGRTKKEAEQRAAQQVL 253 >gi|255010202|ref|ZP_05282328.1| ribonuclease III [Bacteroides fragilis 3_1_12] Length = 290 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 13/218 (5%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ N L E+AL H S + ++ + ERLEFLGD IL ++ +++ HF+ +E Sbjct: 27 LGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYQHFEGKRE 86 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V ET +++A E+ L I+ S+ S + + + E+ I A+YL Sbjct: 87 GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 142 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184 D G E F+ K + + K R + K++L EW+ K V+ E F + Sbjct: 143 DRGYECCKQFMQKKIIEPYIDLDKLSRKEVNFKSKLIEWSQKNKMEVSFELIEQFLD-KE 201 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 ++P F V I G+ G SK+ ++Q AA LK+ Sbjct: 202 NNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMALKK 239 >gi|289643138|ref|ZP_06475267.1| ribonuclease III [Frankia symbiont of Datisca glomerata] gi|289507030|gb|EFD28000.1| ribonuclease III [Frankia symbiont of Datisca glomerata] Length = 272 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 101/197 (51%), Gaps = 12/197 (6%) Query: 22 LLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 LLE ALTH S ++Y++ + ERLEFLGD +L L+++ LFN EG+L+ + S Sbjct: 26 LLELALTHRS--YAYEQGGLPTNERLEFLGDSVLSLVVTDALFNRHPDLPEGQLAKQRAS 83 Query: 78 LVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 +V+ ++VAR L + ++ + SI AD +E+LI A+YL G+ Sbjct: 84 VVNMRALAEVARTLGEKGIGPYLLLGRGEETTGGRDKASILADTLEALIGAVYLSSGLGS 143 Query: 135 AGTFVDKYWKQRA-LKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 A FV + + + +G+ D KT LQE + PEY+V GPDH RFT Sbjct: 144 ASEFVHRLFDPLLDVAAGRGAGLDWKTSLQERTASLLLGPPEYEVD-EFGPDHAKRFTAR 202 Query: 193 VEISGLAPAQGMDCSKR 209 ++G G SK+ Sbjct: 203 AVVAGRVLGHGDGGSKK 219 >gi|87123193|ref|ZP_01079044.1| putative ribonuclease III [Synechococcus sp. RS9917] gi|86168913|gb|EAQ70169.1| putative ribonuclease III [Synechococcus sp. RS9917] Length = 231 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 103/201 (51%), Gaps = 7/201 (3%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +ALTH+S +E+LEFLGD +L L + + + GE S LVS + Sbjct: 24 LNEALTHTS--SGLHPHHEQLEFLGDAVLRLAATEFIASTQPQLPMGERSALRAQLVSDQ 81 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 +Q+ ++ +A + ++ + DV T ++A++ E+LI A+Y GG++ ++ Y Sbjct: 82 WLAQLGEQIGIARWWQIGAMASGDVAGHAT-LRAELSEALIGAIYAIGGLQAVQAWLTPY 140 Query: 143 WKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLA 199 W+ A+ + R ++K+ LQEW+ + P Y S DP RF V + L Sbjct: 141 WQPTSAAVLADPHRGNSKSALQEWSQGQALGLPAYDTREASRRHGDPRRFHCRVSLPDLL 200 Query: 200 PAQGMDCSKRAAEQVAAAEVL 220 A+G S+R AEQ AAA +L Sbjct: 201 -AEGWGGSRREAEQHAAAALL 220 >gi|86742282|ref|YP_482682.1| ribonuclease III [Frankia sp. CcI3] gi|86569144|gb|ABD12953.1| RNAse III [Frankia sp. CcI3] Length = 270 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 96/189 (50%), Gaps = 16/189 (8%) Query: 19 NRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 + LL++ALTH S ++Y++ + ERLEFLGD +LGL+++ LF EG+L+ + Sbjct: 23 DPELLDRALTHRS--YAYEKGGLPTNERLEFLGDAVLGLVVTAALFIRHPDLPEGQLAKQ 80 Query: 75 FNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 S+V+ + VAR + L ++ + SI AD +E++I A+YL G Sbjct: 81 RASVVNMRALADVARGIGPTGLGPYLLLGRGEETTGGRDKASILADTLEAIIGAVYLSSG 140 Query: 132 IEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 ++VA FV D + A + D KT LQE PEY V +GPDH Sbjct: 141 LDVASGFVHRLFDPLLDEAAGRGAGL--DWKTSLQEQTAVLALGPPEYIVE-EAGPDHAK 197 Query: 188 RFTVVVEIS 196 RFT I+ Sbjct: 198 RFTAYARIA 206 >gi|313147996|ref|ZP_07810189.1| ribonuclease III [Bacteroides fragilis 3_1_12] gi|313136763|gb|EFR54123.1| ribonuclease III [Bacteroides fragilis 3_1_12] Length = 294 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 13/218 (5%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ N L E+AL H S + ++ + ERLEFLGD IL ++ +++ HF+ +E Sbjct: 31 LGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYQHFEGKRE 90 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V ET +++A E+ L I+ S+ S + + + E+ I A+YL Sbjct: 91 GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 146 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184 D G E F+ K + + K R + K++L EW+ K V+ E F + Sbjct: 147 DRGYECCKQFMQKKIIEPYIDLDKLSRKEVNFKSKLIEWSQKNKMEVSFELIEQFLD-KE 205 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 ++P F V I G+ G SK+ ++Q AA LK+ Sbjct: 206 NNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMALKK 243 >gi|161507714|ref|YP_001577671.1| ribonuclease III [Lactobacillus helveticus DPC 4571] gi|260101401|ref|ZP_05751638.1| ribonuclease III [Lactobacillus helveticus DSM 20075] gi|160348703|gb|ABX27377.1| Double stranded RNA-specific ribonuclease RNase [Lactobacillus helveticus DPC 4571] gi|260084741|gb|EEW68861.1| ribonuclease III [Lactobacillus helveticus DSM 20075] gi|323466305|gb|ADX69992.1| Double stranded RNA-specific ribonuclease RNase [Lactobacillus helveticus H10] Length = 228 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 93/194 (47%), Gaps = 11/194 (5%) Query: 17 FANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N LLE+A THSS S+ + YE+LEFLGD +L L +S L+ H+ EGEL+ Sbjct: 18 FNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAVSDYLYRHYPKLNEGELT 77 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +++V E S+ A E + I + + K ++ DV E+ AL+LD G+ Sbjct: 78 RLRSNIVRTEGFSEFAIECGFQNEIHLGNGEEKAGARKRKTLLEDVFEAFNGALFLDQGM 137 Query: 133 EVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRF 189 F+ + G+F RD KT+LQE V EY V S P P F Sbjct: 138 PAVQHFL-HLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVNIEYSVISESQLP---PHF 193 Query: 190 TVVVEISGLAPAQG 203 V ++I+ QG Sbjct: 194 VVELKINDQVQTQG 207 >gi|116490531|ref|YP_810075.1| dsRNA-specific ribonuclease [Oenococcus oeni PSU-1] gi|290889932|ref|ZP_06553019.1| hypothetical protein AWRIB429_0409 [Oenococcus oeni AWRIB429] gi|122277282|sp|Q04GL2|RNC_OENOB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116091256|gb|ABJ56410.1| RNAse III [Oenococcus oeni PSU-1] gi|290480542|gb|EFD89179.1| hypothetical protein AWRIB429_0409 [Oenococcus oeni AWRIB429] Length = 231 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 106/215 (49%), Gaps = 8/215 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 +++ G FAN+ LL +A T + + + E Y+RLEFLGD ++ L+++ LF + Sbjct: 8 IKEDFGIEFANQDLLLEAFTQGNYLNEHPEEKGRDYQRLEFLGDSVMQLIVADYLFTRYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + +EG+L+ ++V +++ S AR +IR+ S+ D+ E+ I Sbjct: 68 AWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELSGARNRDSLLEDIWEAFIG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALY D G + TF++K + A+ G F D K++LQE V EYKV Sbjct: 128 ALYKDQGAKAVFTFLNKAFFP-AIDEGFFEEFIDYKSKLQELLQKAGSVDIEYKVENEDL 186 Query: 183 PD-HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 D P F V V ++ A G S + AE+ AA Sbjct: 187 SDPQKPHFEVTVFVNDKAIGSGSGRSIKIAEKRAA 221 >gi|288560534|ref|YP_003424020.1| ribonuclease III Rnc [Methanobrevibacter ruminantium M1] gi|288543244|gb|ADC47128.1| ribonuclease III Rnc [Methanobrevibacter ruminantium M1] Length = 232 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 6/206 (2%) Query: 19 NRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 + L E A THSS S + YERLEFLGD +L +L S L N EG+L+ + Sbjct: 13 DMELYETAFTHSSYASKHHLNDYERLEFLGDSVLNMLTSEFLQNMHPDFGEGKLTKLRAN 72 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 V + E L ++++ + + + SI ADV ES + A+YLD GI Sbjct: 73 YVCQNALIVYSHEFGLDKCVKLNLEDNALTDNEVISITADVFESFLGAIYLDQGISKCKE 132 Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE--YKVTFRSGPDHDPRFTVVVEI 195 F+ F D K+ ++E+ A + E Y++ G HD F + + I Sbjct: 133 FLTITVFPYIENEQIFFHDYKSTIKEYGDA---IDKEITYELIEEHGAPHDKTFVMKILI 189 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLK 221 G+ G+ SK+ AEQVAA +K Sbjct: 190 DGVDFGHGVGKSKKEAEQVAACNAIK 215 >gi|19553272|ref|NP_601274.1| ribonuclease III [Corynebacterium glutamicum ATCC 13032] gi|62390909|ref|YP_226311.1| ribonuclease III [Corynebacterium glutamicum ATCC 13032] gi|28201879|sp|Q8NNV6|RNC_CORGL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|21324844|dbj|BAB99467.1| dsRNA-specific ribonuclease [Corynebacterium glutamicum ATCC 13032] gi|41326248|emb|CAF20410.1| RIBONUCLEASE III [Corynebacterium glutamicum ATCC 13032] Length = 247 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 102/207 (49%), Gaps = 5/207 (2%) Query: 20 RSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 R LL ALTH S ++ + ERLEFLGD +LGL ++ L+ + S+ E ++S S Sbjct: 36 RDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLSVANKLYEQYPSSPESDVSKMRAS 95 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 +VS + +ARE+DL + I + SI AD E+L A++ G E A Sbjct: 96 IVSRYGLADIAREIDLGNHILLGKGELLTEGRSKDSILADTTEALFGAIFRQHGFETARD 155 Query: 138 FVDKY--WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + + +K + +D KT LQE + EY T GPDHD FT +V + Sbjct: 156 VILRLFAYKIDNASARGIHQDWKTTLQEELAQRKRPMAEYSAT-SVGPDHDLVFTAIVTL 214 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G +G +K+ AEQ AA + ++ Sbjct: 215 EGEEMGRGEGPNKKLAEQEAAHQAFRK 241 >gi|299147039|ref|ZP_07040106.1| ribonuclease 3 [Bacteroides sp. 3_1_23] gi|298514924|gb|EFI38806.1| ribonuclease 3 [Bacteroides sp. 3_1_23] Length = 355 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 17/220 (7%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ N L E+AL H S S + + ERLEFLGD IL ++ +++ F+ +E Sbjct: 40 LGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFEGKRE 99 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V ET +++A E+ L I+ S+ S + + + E+ I A+YL Sbjct: 100 GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 155 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184 D G E F+++ R + K R + K++L EW+ K V+ E F D Sbjct: 156 DQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL---D 212 Query: 185 HD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 HD P F V I GL G SK+ ++Q AA +K+ Sbjct: 213 HDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252 >gi|145224771|ref|YP_001135449.1| ribonuclease III [Mycobacterium gilvum PYR-GCK] gi|315445101|ref|YP_004077980.1| RNAse III [Mycobacterium sp. Spyr1] gi|145217257|gb|ABP46661.1| RNAse III [Mycobacterium gilvum PYR-GCK] gi|315263404|gb|ADU00146.1| RNAse III [Mycobacterium sp. Spyr1] Length = 234 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 102/206 (49%), Gaps = 14/206 (6%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S S+ + ERLEFLGD +LGL I+ L++ EG+L+ S+V Sbjct: 20 LLTIALTHRSYSYENGGVPTNERLEFLGDSVLGLTITEELYHRHPDRSEGDLAKLRASIV 79 Query: 80 SAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + + + V R L L +++ + + +SI AD VESL+ A+YL+ G A Sbjct: 80 NTQALADVGRNLSEHGLGAYLLLGKGEENSGGADKSSILADGVESLLGAIYLEHGAVAAR 139 Query: 137 T-----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 F D L +G D K+ LQE + P Y VT +GPDHD FT Sbjct: 140 EVILRLFSDLLDTAPTLGAG---LDWKSSLQELTASLALGAPSYHVT-STGPDHDKEFTA 195 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAA 217 VV I+ G+ +K+ AE AA+ Sbjct: 196 VVIIAEREHGTGVGRTKKEAELKAAS 221 >gi|315920801|ref|ZP_07917041.1| ribonuclease III [Bacteroides sp. D2] gi|313694676|gb|EFS31511.1| ribonuclease III [Bacteroides sp. D2] Length = 330 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 17/220 (7%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ N L E+AL H S S + + ERLEFLGD IL ++ +++ F+ +E Sbjct: 16 LGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFEGKRE 75 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V ET +++A E+ L I+ S+ S + + + E+ I A+YL Sbjct: 76 GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 131 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184 D G E F+++ R + K R + K++L EW+ K V+ E F D Sbjct: 132 DQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL---D 188 Query: 185 HD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 HD P F V I GL G SK+ ++Q AA +K+ Sbjct: 189 HDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 228 >gi|319440517|ref|ZP_07989673.1| ribonuclease III [Corynebacterium variabile DSM 44702] Length = 247 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 6/206 (2%) Query: 21 SLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 +L AL+H S ++ + ERLEFLGD +LGL ++ L+ F E ++S + Sbjct: 36 GMLRLALSHRSFANENGNLPNNERLEFLGDALLGLSVAEQLYRQFPDRSESDISKMRAGV 95 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 V+ ++VAREL + I + + SI AD VE+++ A+YL+ G EVA Sbjct: 96 VNMYALAEVARELGMGGNILLGRGEEMTGGADKHSILADSVEAMLGAIYLECGFEVARAT 155 Query: 139 VDKYWKQR--ALKSGKFRRDAKTELQE-WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 V + ++++ S D KT L E + K P Y + GPDHD F+ V Sbjct: 156 VLRIFERKITTAPSTGLTMDWKTVLLEKMSDLKISGDPVYASDVK-GPDHDQTFSATVSF 214 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLK 221 G A G +K+ AE AA E + Sbjct: 215 DGEARGTGTGHTKKEAEHHAAREAYR 240 >gi|118587506|ref|ZP_01544930.1| ribonuclease III [Oenococcus oeni ATCC BAA-1163] gi|118431957|gb|EAV38699.1| ribonuclease III [Oenococcus oeni ATCC BAA-1163] Length = 243 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 8/215 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 +++ G FAN+ LL +A T + + + E Y+RLEFLGD ++ L+++ LF + Sbjct: 20 IKEDFGIEFANQDLLLEAFTQGNYLNEHPEEKGRDYQRLEFLGDSVMQLIVADYLFTRYP 79 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG+L+ ++V +++ S AR +IR+ S+ D+ E+ I Sbjct: 80 DWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELSGARNRDSLLEDIWEAFIG 139 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALY D G + TF++K + A+ G F D K++LQE V EYKV Sbjct: 140 ALYKDQGAKAVFTFLNKAFFP-AIDEGFFEEFIDYKSKLQELLQKAGSVDIEYKVENEDL 198 Query: 183 PD-HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 D P F V V ++ A G S + AE+ AA Sbjct: 199 SDPQKPHFEVTVFVNDKAIGSGSGRSIKIAEKRAA 233 >gi|199597132|ref|ZP_03210564.1| dsRNA-specific ribonuclease [Lactobacillus rhamnosus HN001] gi|258508646|ref|YP_003171397.1| ribonuclease III [Lactobacillus rhamnosus GG] gi|199591936|gb|EDZ00011.1| dsRNA-specific ribonuclease [Lactobacillus rhamnosus HN001] gi|257148573|emb|CAR87546.1| Ribonuclease III [Lactobacillus rhamnosus GG] gi|259649952|dbj|BAI42114.1| ribonuclease III [Lactobacillus rhamnosus GG] Length = 231 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 96/204 (47%), Gaps = 7/204 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 S L +R G F + SLL++A THSS + ++E ERLEFLGD +L L +S L+ Sbjct: 8 SELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYRK 67 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+L+ + V S ++E +I++ K ++ D+ E+ Sbjct: 68 FPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLEDLFEAF 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 ALYLD G E F + + + +G+F +D KT LQE V Y + Sbjct: 128 NGALYLDQGREANIKFAKRIIFPK-IDAGEFSADQDHKTALQETLQQNGDVAIVYHLLDE 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGM 204 GP H+ +F V VE+ G G Sbjct: 187 KGPAHERQFHVDVEVEGHVLGTGF 210 >gi|269957060|ref|YP_003326849.1| ribonuclease III [Xylanimonas cellulosilytica DSM 15894] gi|269305741|gb|ACZ31291.1| ribonuclease III [Xylanimonas cellulosilytica DSM 15894] Length = 239 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 106/222 (47%), Gaps = 13/222 (5%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + L +++G + LL ALTH S +H ERLEFLGD +LG++++ LF Sbjct: 13 TALLEKLGVPL-DPELLVLALTHRSFAHEAGGIPHNERLEFLGDSVLGVVVTEALFRRHP 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ + VS + + VAR L+L S++ + R+ SI +D VE+LI Sbjct: 72 DVSEGELAKMRAATVSQRSLAAVARRLELGSYVLLGKGERRTRGFDKDSILSDTVEALIG 131 Query: 125 ALYLDGGIEVAGTFV-----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 A Y+ G+E A V D L +G D KT LQE + P Y+V Sbjct: 132 ATYISHGLEAARELVHRLVDDTLDAAADLGAG---LDWKTSLQEACAERGYPAPTYEVDA 188 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP+H F V +G G +K+ AEQ AA + + Sbjct: 189 E-GPEHARAFHAQV-TAGPVLGLGHGTAKKHAEQEAAEQAYR 228 >gi|257457873|ref|ZP_05623032.1| ribonuclease III [Treponema vincentii ATCC 35580] gi|257444586|gb|EEV19670.1| ribonuclease III [Treponema vincentii ATCC 35580] Length = 245 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 8/204 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFD 64 T +K F N SLL+ A H S S+ + + + ERLEFLGD +LG++++ L+ Sbjct: 18 TFQKNAVCKFKNISLLDIAFHHRSFSNEHSDFPINNERLEFLGDSVLGMIVAAELYLAHP 77 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ ++VS ++ +A L++ ++ + ++ AD +E+LI Sbjct: 78 EKPEGDLAKIKAAVVSEDSLFPIALNLNIDKYLMLGHGEEVSGGRKKKALLADALEALIG 137 Query: 125 ALYLDGGIEVAGTFVDKYW--KQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181 ALYLD G +V FV K + + ++ K R RD K+ LQE+ K+ + P+Y + Sbjct: 138 ALYLDSGFKVVQRFVLKIIEPQMQLVEQNKHRYRDYKSLLQEYVQKKYRIIPKYLLVETH 197 Query: 182 GPDHDPRFTVVVEISG--LAPAQG 203 GPDHD F V V I PA G Sbjct: 198 GPDHDRVFQVKVVIKDKEYEPALG 221 >gi|28572359|ref|NP_789139.1| ribonuclease III [Tropheryma whipplei TW08/27] gi|28410490|emb|CAD66876.1| ribonuclease III [Tropheryma whipplei TW08/27] Length = 215 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 93/178 (52%), Gaps = 8/178 (4%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL A H S S + ++ ERLEFLGD +LGL++S LF EG+LS + +V Sbjct: 12 LLRTAFVHKSFSFENGACQNNERLEFLGDAVLGLVVSHYLFETCPEYTEGQLSAARSYIV 71 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + +Q+A+EL+L F+ + + TS+ AD++ESLI A+ +D G E A FV Sbjct: 72 SGTSIAQIAKELNLGQFMLLGKGEKLAGGMDKTSLLADLLESLIGAVMVDQGFESARDFV 131 Query: 140 DKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 ++ + G+F D KT+LQ+ + Y+V GP H F V ++ Sbjct: 132 LALVGEKLRQVGEFSVDDPKTKLQKLTRTQL----VYEVV-TEGPPHSRTFKASVIVN 184 >gi|295086176|emb|CBK67699.1| RNAse III [Bacteroides xylanisolvens XB1A] Length = 355 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 17/220 (7%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ N L E+AL H S S + + ERLEFLGD IL ++ +++ F+ +E Sbjct: 40 LGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFEGKRE 99 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V ET +++A E+ L I+ S+ S + + + E+ I A+YL Sbjct: 100 GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 155 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184 D G E F+++ R + K R + K++L EW+ K V+ E F D Sbjct: 156 DQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL---D 212 Query: 185 HD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 HD P F V I GL G SK+ ++Q AA +K+ Sbjct: 213 HDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252 >gi|224282434|ref|ZP_03645756.1| ribonuclease III [Bifidobacterium bifidum NCIMB 41171] gi|310286876|ref|YP_003938134.1| Ribonuclease III [Bifidobacterium bifidum S17] gi|311063777|ref|YP_003970502.1| ribonuclease III [Bifidobacterium bifidum PRL2010] gi|313139580|ref|ZP_07801773.1| ribonuclease 3 [Bifidobacterium bifidum NCIMB 41171] gi|309250812|gb|ADO52560.1| Ribonuclease III [Bifidobacterium bifidum S17] gi|310866096|gb|ADP35465.1| RncS Ribonuclease III [Bifidobacterium bifidum PRL2010] gi|313132090|gb|EFR49707.1| ribonuclease 3 [Bifidobacterium bifidum NCIMB 41171] Length = 255 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 75/210 (35%), Positives = 104/210 (49%), Gaps = 19/210 (9%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH + +YERLEFLGD +L L+ + LF EG+L+ V Sbjct: 22 LLIQALTHRSFSHEHPGTSNYERLEFLGDAVLELVSTETLFTLHPDMTEGQLAKMRAKAV 81 Query: 80 SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134 S E S +AR+ L + FI + + + +SI D+VESLI A +L+ GIE V Sbjct: 82 SEEALSAIARDKLHVGPFILLGHGEAESGGAEKSSILCDIVESLIGATFLEHGIEGARKV 141 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 +D + A + D KT L AH P Y+++ SGP++ FT Sbjct: 142 VHRLIDDTLAEVATEGPAL--DWKTSLTVKAHELGLDEPRYRMSV-SGPEYAQEFTAKAT 198 Query: 195 ISGLAP-----AQGMDCSKRAAEQVAAAEV 219 I P +G SKR A Q+AAAE+ Sbjct: 199 I---GPKDDIIGKGTGTSKRKA-QLAAAEM 224 >gi|333029521|ref|ZP_08457582.1| Ribonuclease 3 [Bacteroides coprosuis DSM 18011] gi|332740118|gb|EGJ70600.1| Ribonuclease 3 [Bacteroides coprosuis DSM 18011] Length = 276 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 112/222 (50%), Gaps = 21/222 (9%) Query: 13 IGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ + ++AL H S + Y ++ ERLEFLGD +L +++ LLF++FD KE Sbjct: 27 LGFVPNDLRYYQQALIHKSSTKVSKDGYYQNNERLEFLGDAVLDAVVADLLFHYFDEKKE 86 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V ET +++A E+ L I S+ S + + E+LI A+YL Sbjct: 87 GFLTNTRSKIVQRETLNKLAVEIGLDKHIIFST----KSSSHNNYMFGNAFEALIGAIYL 142 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFR----- 180 D G + F+++ + L + + + K++L EW G +YK+TF Sbjct: 143 DQGYKKCKAFIEQRIIDQFLDLDRLAQTELNFKSKLIEW-----GQKNKYKITFELIEEF 197 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +P F V + G++ +G+ SK+ ++Q A+ + L + Sbjct: 198 QDEQSNPVFQTEVLVEGISGGRGVGYSKKESQQNASEKTLDK 239 >gi|258539823|ref|YP_003174322.1| ribonuclease III [Lactobacillus rhamnosus Lc 705] gi|257151499|emb|CAR90471.1| Ribonuclease III [Lactobacillus rhamnosus Lc 705] Length = 231 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 96/204 (47%), Gaps = 7/204 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 S L +R G F + SLL++A THSS + ++E ERLEFLGD +L L +S L+ Sbjct: 8 SELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYRK 67 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+L+ + V S ++E +I++ K ++ D+ E+ Sbjct: 68 FPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLEDLFEAF 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 ALYLD G E F + + + +G+F +D KT LQE V Y + Sbjct: 128 NGALYLDQGREANIKFAKQIIFPK-IDAGEFSADQDHKTALQETLQQNGDVAIVYHLLDE 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGM 204 GP H+ +F V VE+ G G Sbjct: 187 KGPAHERQFHVDVEVEGRVLGTGF 210 >gi|160883983|ref|ZP_02064986.1| hypothetical protein BACOVA_01957 [Bacteroides ovatus ATCC 8483] gi|156110713|gb|EDO12458.1| hypothetical protein BACOVA_01957 [Bacteroides ovatus ATCC 8483] Length = 352 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 17/220 (7%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ N L E+AL H S S + + ERLEFLGD IL ++ +++ F+ +E Sbjct: 40 LGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFEGKRE 99 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V ET +++A E+ L I+ S+ S + + + E+ I A+YL Sbjct: 100 GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 155 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184 D G E F+++ R + K R + K++L EW+ K V+ E F D Sbjct: 156 DQGYERCKLFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL---D 212 Query: 185 HD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 HD P F V I GL G SK+ ++Q AA +K+ Sbjct: 213 HDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252 >gi|229552452|ref|ZP_04441177.1| ribonuclease III [Lactobacillus rhamnosus LMS2-1] gi|229314189|gb|EEN80162.1| ribonuclease III [Lactobacillus rhamnosus LMS2-1] Length = 231 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 96/204 (47%), Gaps = 7/204 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 S L +R G F + SLL++A THSS + ++E ERLEFLGD +L L +S L+ Sbjct: 8 SELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYRK 67 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+L+ + V S ++E +I++ K ++ D+ E+ Sbjct: 68 FPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLEDLFEAF 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 ALYLD G E F + + + +G+F +D KT LQE V Y + Sbjct: 128 NGALYLDQGREANIKFTKQIIFPK-IDAGEFSADQDHKTALQETLQQNGDVAIVYHLLDE 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGM 204 GP H+ +F V VE+ G G Sbjct: 187 KGPAHERQFHVDVEVEGRVLGTGF 210 >gi|237716739|ref|ZP_04547220.1| ribonuclease III [Bacteroides sp. D1] gi|262405515|ref|ZP_06082065.1| ribonuclease III [Bacteroides sp. 2_1_22] gi|298480489|ref|ZP_06998686.1| ribonuclease 3 [Bacteroides sp. D22] gi|229442722|gb|EEO48513.1| ribonuclease III [Bacteroides sp. D1] gi|262356390|gb|EEZ05480.1| ribonuclease III [Bacteroides sp. 2_1_22] gi|298273310|gb|EFI14874.1| ribonuclease 3 [Bacteroides sp. D22] Length = 331 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 17/220 (7%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ N L E+AL H S S + + ERLEFLGD IL ++ +++ F+ +E Sbjct: 16 LGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFEGKRE 75 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V ET +++A E+ L I+ S+ S + + + E+ I A+YL Sbjct: 76 GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 131 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184 D G E F+++ R + K R + K++L EW+ K V+ E F D Sbjct: 132 DQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL---D 188 Query: 185 HD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 HD P F V I GL G SK+ ++Q AA +K+ Sbjct: 189 HDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 228 >gi|159904268|ref|YP_001551612.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9211] gi|159889444|gb|ABX09658.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9211] Length = 249 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 107/206 (51%), Gaps = 7/206 (3%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 ++ +ALTH+S + + ++ERLEFLGD +L L S + +F + K G+ S LVS Sbjct: 43 NIFNEALTHTSTNS--KTNHERLEFLGDAVLRLAASEYIEENFPNLKVGDRSALRAQLVS 100 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFV 139 E ++V +E+++ F+ + KD + T +QA+ E++I ALY I+ ++ Sbjct: 101 DEWLTKVGQEINIKQFMLIGPKAHKDKAASAT-LQAEATEAMIGALYECLKDIKSIKVWL 159 Query: 140 DKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEIS 196 YW + +++ R ++K+ LQEW+ P YK S DP RF V I+ Sbjct: 160 KPYWDKTSKSVLEDPHRLNSKSALQEWSQGNGLDIPIYKNEELSQKHGDPRRFFCKVLIN 219 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKR 222 +G S++ AE+ AA + L + Sbjct: 220 KKILGEGWGSSRKQAEKEAALKALNK 245 >gi|237720469|ref|ZP_04550950.1| ribonuclease III [Bacteroides sp. 2_2_4] gi|229450220|gb|EEO56011.1| ribonuclease III [Bacteroides sp. 2_2_4] Length = 328 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 17/220 (7%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ N L E+AL H S S + + ERLEFLGD IL ++ +++ F+ +E Sbjct: 16 LGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFEGKRE 75 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V ET +++A E+ L I+ S+ S + + + E+ I A+YL Sbjct: 76 GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 131 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184 D G E F+++ R + K R + K++L EW+ K V+ E F D Sbjct: 132 DQGYERCKLFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL---D 188 Query: 185 HD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 HD P F V I GL G SK+ ++Q AA +K+ Sbjct: 189 HDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 228 >gi|83319588|ref|YP_424465.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535692|sp|Q2SRZ8|RNC_MYCCT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|83283474|gb|ABC01406.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 232 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/215 (31%), Positives = 112/215 (52%), Gaps = 16/215 (7%) Query: 19 NRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 ++ + ++ALTH+S ++ + SY+RLEFLGD IL + +S LF H+ EGEL+ + Sbjct: 16 DQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYVSKFLFFHYSKLGEGELTRLRS 75 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 S V E+ S++A++++L IR+ SI AD+ E+L AA+Y+D + G Sbjct: 76 STVREESLSRIAKDINLGQLIRLGHGELMTKGYEKQSILADIFEALTAAVYIDQNED--G 133 Query: 137 TFVDKYWKQRAL----KSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSG--PDHDP 187 + W ++ L K F +D K+ELQE ++ +Y + ++ Sbjct: 134 LLI---WLEQTLFKYMKDPTFINVTKDFKSELQELLQSEKRSDLKYIIENEEFFVNENKT 190 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +TV V + G G SK+ AEQ AA++ L + Sbjct: 191 LYTVSVNLDGQKFGVGKGYSKQEAEQNAASDCLSK 225 >gi|28493529|ref|NP_787690.1| ribonuclease III [Tropheryma whipplei str. Twist] gi|81437751|sp|Q83FY2|RNC_TROWT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101654|sp|Q83I82|RNC_TROW8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28476571|gb|AAO44659.1| ribonuclease III [Tropheryma whipplei str. Twist] Length = 223 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 93/178 (52%), Gaps = 8/178 (4%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL A H S S + ++ ERLEFLGD +LGL++S LF EG+LS + +V Sbjct: 20 LLRTAFVHKSFSFENGACQNNERLEFLGDAVLGLVVSHYLFETCPEYTEGQLSAARSYIV 79 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + +Q+A+EL+L F+ + + TS+ AD++ESLI A+ +D G E A FV Sbjct: 80 SGTSIAQIAKELNLGQFMLLGKGEKLAGGMDKTSLLADLLESLIGAVMVDQGFESARDFV 139 Query: 140 DKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 ++ + G+F D KT+LQ+ + Y+V GP H F V ++ Sbjct: 140 LALVGEKLRQVGEFSVDDPKTKLQKLTRTQL----VYEVV-TEGPPHSRTFKASVIVN 192 >gi|329964465|ref|ZP_08301519.1| ribonuclease III [Bacteroides fluxus YIT 12057] gi|328524865|gb|EGF51917.1| ribonuclease III [Bacteroides fluxus YIT 12057] Length = 294 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 113/225 (50%), Gaps = 13/225 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y K +G+ N + ++AL H S S ++ + ERLEFLGD IL ++ +++ Sbjct: 20 YLCFYKILGFFPHNIQIYQQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGDIVYK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HFD +EG L+ + +V ET +++A E+ L ++ S+ S + + + E+ Sbjct: 80 HFDGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKV 177 I A+YLD G + F+++ + + K R + K++L EW+ K V+ E + Sbjct: 136 FIGAIYLDQGYDRCKQFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQKNKMEVSFEL-I 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 D++P F V I G++ G SK+ ++Q AA LK+ Sbjct: 195 EQLLDEDYNPMFHTEVRIEGISAGTGTGYSKKESQQNAARMTLKK 239 >gi|319948353|ref|ZP_08022497.1| ribonuclease III [Dietzia cinnamea P4] gi|319437984|gb|EFV92960.1| ribonuclease III [Dietzia cinnamea P4] Length = 237 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 9/219 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S L+ +G A L +ALTH S + H ERLEFLGD +L L+++ L+N + Sbjct: 6 SALDAVLGVALPA-GLATQALTHRSYAYEHGGLPHNERLEFLGDAVLELVVTEYLYNAYP 64 Query: 65 SAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG+L+ SLV+ + +AREL L +R+ SI AD +E+ Sbjct: 65 DRPEGDLAKIRASLVNTYVLADIARELGDGGLGRHLRLGRGEELTGGRDKHSILADTLEA 124 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + ++YL G+E A ++K R + D KT LQE + Y++T Sbjct: 125 VFGSVYLTHGLETARGLIEKIIGDRLTVVPHLGAALDWKTSLQEKCASLGRSKARYEIT- 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 +GPDHD F+ VV + +G +K+ AEQ AA + Sbjct: 184 STGPDHDKTFSAVVFVGDDPLGEGTGRTKKEAEQKAAEQ 222 >gi|153807268|ref|ZP_01959936.1| hypothetical protein BACCAC_01546 [Bacteroides caccae ATCC 43185] gi|149130388|gb|EDM21598.1| hypothetical protein BACCAC_01546 [Bacteroides caccae ATCC 43185] Length = 329 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 108/218 (49%), Gaps = 13/218 (5%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ N L E+AL H S S + + ERLEFLGD IL ++ +++ F+ +E Sbjct: 40 LGFYPRNIQLYEQALLHKSSSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFEGKRE 99 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V ET +++A E+ L I+ S+ S + + + E+ I A+YL Sbjct: 100 GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 155 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAH-AKFGVTPEYKVTFRSGPD 184 D G E F+++ R + K R + K++L EW+ +K V+ E F D Sbjct: 156 DQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKSKLEVSFELIEQFLDQ-D 214 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +P F V I GL G SK+ ++Q AA +K+ Sbjct: 215 SNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252 >gi|260642610|ref|ZP_05416578.2| ribonuclease III [Bacteroides finegoldii DSM 17565] gi|260621352|gb|EEX44223.1| ribonuclease III [Bacteroides finegoldii DSM 17565] Length = 270 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 13/218 (5%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ N L E+AL H S S ++ + ERLEFLGD IL ++ +++ HF+ +E Sbjct: 27 LGFYPRNIQLYEQALLHKSTSLRSEKGRPLNNERLEFLGDAILDAIVGDIVYKHFEGKRE 86 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V ET +++A E+ L I+ S+ S + + + E+ I A+YL Sbjct: 87 GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 142 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184 D G E F+++ R + R + K++L EW+ K V+ E F D Sbjct: 143 DQGYERCKQFMEERIINRYIDLDILSRKEVNFKSKLIEWSQKNKMEVSFELIEQFLDR-D 201 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +P F V I G G SK+ ++Q AA +K+ Sbjct: 202 SNPVFQTEVRIEGFPAGTGTGYSKKESQQNAAQMAIKK 239 >gi|313665378|ref|YP_004047249.1| ribonuclease III [Mycoplasma leachii PG50] gi|312949374|gb|ADR23970.1| ribonuclease III [Mycoplasma leachii PG50] Length = 232 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 16/215 (7%) Query: 19 NRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 ++ + ++ALTH+S ++ + SY+RLEFLGD IL + S LF ++ EGEL+ Sbjct: 16 DQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYTSKFLFFNYSKLGEGELTRLRA 75 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 S+V E+ S++AR+++L IR+ SI AD+ E+L AA+YLD E G Sbjct: 76 SIVREESLSRIARDINLGQLIRLGHSELMTKGYEKQSILADIFEALTAAIYLDQSEE--G 133 Query: 137 TFVDKYWKQRAL----KSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRS--GPDHDP 187 + W ++ L K F +D K+ELQE ++ +Y ++ Sbjct: 134 LLI---WLEQTLFKYMKDPTFINVTKDFKSELQELLQSEKRSDLKYITENEEFFANENKT 190 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +TV + + G G SK+ AEQ AA++ L + Sbjct: 191 LYTVSINLDGQKFGVGKGYSKQEAEQNAASDCLSK 225 >gi|290343597|ref|YP_003494964.1| hypothetical protein OTV1_125 [Ostreococcus tauri virus 1] gi|260161012|emb|CAY39713.1| hypothetical protein OTV1_125 [Ostreococcus tauri virus 1] Length = 240 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 105/214 (49%), Gaps = 10/214 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65 +E+ +G + S ++A TH S Y++ S+E LEF+GD +LG +I+ LF+ ++ Sbjct: 8 IEQLVGTKIRDLSFYQRAFTHKSALKEYEQFNVSFETLEFMGDSVLGFIITKFLFDRYEE 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG L+ LV +ET + +A +L L + + ++ + I DV E+L+ A Sbjct: 68 RQEGFLTKARTKLVRSETLAAIALKLGLNKLVLMDEKGTRNGWNNNPKILEDVFEALVGA 127 Query: 126 LYLDGGIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +Y+D G+ A FV + + K L S + K +L PEY+V Sbjct: 128 IYMDLGLLHAKQFVLRIYNDPKYIDLNSIMVDDNFKDKLMRHCQVNNLPLPEYEVV---- 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + F V I+G +G SK+ AEQ+AA Sbjct: 184 SHWEGNFYVDALINGRFCGRGQAKSKKQAEQLAA 217 >gi|163955118|ref|YP_001648222.1| hypothetical protein OsV5_145f [Ostreococcus virus OsV5] gi|163638567|gb|ABY27926.1| hypothetical protein OsV5_145f [Ostreococcus virus OsV5] Length = 241 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 105/214 (49%), Gaps = 10/214 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65 +E+ +G + S ++A TH S Y++ S+E LEF+GD +LG +I+ LF+ ++ Sbjct: 8 IEQLVGTKIRDLSFYQRAFTHKSALKEYEQFNVSFETLEFMGDSVLGFIITKFLFDRYEE 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG L+ LV +ET + +A +L L + + ++ + I DV E+L+ A Sbjct: 68 RQEGFLTKARTKLVRSETLAAIALKLGLNKLVLMDEKGTRNGWNNNPKILEDVFEALVGA 127 Query: 126 LYLDGGIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +Y+D G+ A FV + + K L S + K +L PEY+V Sbjct: 128 IYMDLGLLHAKQFVLRIYNDPKYIDLNSIMVDDNFKDKLMRHCQVNNLPLPEYEVV---- 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + F V I+G +G SK+ AEQ+AA Sbjct: 184 SHWEGNFYVDALINGRFCGRGQAKSKKQAEQLAA 217 >gi|294660491|ref|NP_853275.2| ribonuclease 3 [Mycoplasma gallisepticum str. R(low)] gi|284812153|gb|AAP56843.2| Ribonuclease 3 (Ribonuclease III) [Mycoplasma gallisepticum str. R(low)] gi|284930761|gb|ADC30700.1| Ribonuclease 3 (Ribonuclease III) [Mycoplasma gallisepticum str. R(high)] gi|284931334|gb|ADC31272.1| Ribonuclease 3 (Ribonuclease III) [Mycoplasma gallisepticum str. F] Length = 655 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 18/220 (8%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 K+ N L E+ALTH+S ++ + +Y+RLEFLGD I+ +++ LFNH DS+ E Sbjct: 437 KKFKVVTNNIGLYEEALTHNSYANEMHLKYNYQRLEFLGDAIINKIVAEYLFNHSDSS-E 495 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GE++ ++ + T + A +L+L ++IRV L+ + I D+ E+ I A+YL Sbjct: 496 GEMTKDRIKIIQSNTLIKAATQLELINYIRVGEGLK--IAPLSPKILEDIFEAFIGAMYL 553 Query: 129 DGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK-FGVTPEYKVTF-RSG 182 D G ++ + Y+++ L D K+ QE H+ + Y+ T+ R Sbjct: 554 DQGEYAVRKILNDTIIGYYQKGQLTEN---TDYKSIFQEIIHSTGLNMKIHYERTYDRQK 610 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H TV + G+ +G D S AE AA E + + Sbjct: 611 NLH----TVSLYAGGIMYGEGKDSSTHKAEIKAAKEAISK 646 >gi|298387131|ref|ZP_06996685.1| ribonuclease 3 [Bacteroides sp. 1_1_14] gi|298260281|gb|EFI03151.1| ribonuclease 3 [Bacteroides sp. 1_1_14] Length = 324 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 109/220 (49%), Gaps = 17/220 (7%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ N + E+AL H S S ++ + ERLEFLGD IL ++ +++ F+ +E Sbjct: 40 LGFYPHNIQIYEQALLHKSSSVRSEKGRPLNNERLEFLGDAILDAIVGDIVYKRFEGKRE 99 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V ET +++A E+ L I+ S+ S + + + E+ I A+YL Sbjct: 100 GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 155 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184 D G E F+++ R + K R + K++L EW+ K V+ E F D Sbjct: 156 DQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL---D 212 Query: 185 HD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 HD P F V I GL G SK+ ++Q AA +K+ Sbjct: 213 HDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252 >gi|305681508|ref|ZP_07404315.1| ribonuclease III [Corynebacterium matruchotii ATCC 14266] gi|305659713|gb|EFM49213.1| ribonuclease III [Corynebacterium matruchotii ATCC 14266] Length = 259 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 7/205 (3%) Query: 22 LLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +L ALTH S ++ + ERLEFLGD +LGL ++ LF + + E ++S S+V Sbjct: 38 ILTLALTHRSFANENGMLPNNERLEFLGDAVLGLSVAGKLFEQYPTRPESDISKMRASIV 97 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + +ARE+ L +I + SI AD E+L+ A+Y G ++A V Sbjct: 98 SRYGLADIAREIGLGQYILLGKGELLTDGRNKDSILADTTEALLGAIYRIHGFDIARDVV 157 Query: 140 DKYWKQRA--LKSGKFRRDAKTELQE-WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + + + ++ +D KT LQE A K + P Y+ T GP+H+ FT V + Sbjct: 158 LRLFAHKISHAQATALHQDWKTSLQERLAEYKLPM-PVYEAT-SVGPEHEQVFTASVNVL 215 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLK 221 G +G +K+ AEQ A + L+ Sbjct: 216 GRIIGEGTGTNKKLAEQAGAHQALE 240 >gi|229140493|ref|ZP_04269048.1| Ribonuclease 3 [Bacillus cereus BDRD-ST26] gi|228643054|gb|EEK99330.1| Ribonuclease 3 [Bacillus cereus BDRD-ST26] Length = 210 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 101/204 (49%), Gaps = 7/204 (3%) Query: 25 KALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +A THSS + ++ E ERLEFLGD +L L +S LF + + EGEL+ ++V Sbjct: 3 QAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVC 62 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + + A EL S + + ++ ADV E+ I ALYLD G+E F+ Sbjct: 63 EPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLK 122 Query: 141 KYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + + + G F D K++LQE EY++ GP H+ F V ++ + Sbjct: 123 EIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTLNNV 181 Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222 A G SK+ AEQ AAAE LK+ Sbjct: 182 ALGLGSGKSKKEAEQQAAAEALKK 205 >gi|225021993|ref|ZP_03711185.1| hypothetical protein CORMATOL_02025 [Corynebacterium matruchotii ATCC 33806] gi|224945279|gb|EEG26488.1| hypothetical protein CORMATOL_02025 [Corynebacterium matruchotii ATCC 33806] Length = 259 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 7/205 (3%) Query: 22 LLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +L ALTH S ++ + ERLEFLGD +LGL ++ LF + + E ++S S+V Sbjct: 38 ILTLALTHRSFANENGMLPNNERLEFLGDAVLGLSVAGKLFEQYPTRPESDISKMRASIV 97 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + +ARE+ L +I + SI AD E+L+ A+Y G ++A V Sbjct: 98 SRYGLADIAREIGLGQYILLGKGELLTDGRNKDSILADTTEALLGAIYRIHGFDIARDVV 157 Query: 140 DKYWKQRA--LKSGKFRRDAKTELQE-WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + + + ++ +D KT LQE A K + P Y+ T GP+H+ FT V + Sbjct: 158 LRLFAHKISHAQATALHQDWKTSLQERLAEYKLPM-PVYEAT-SVGPEHEQVFTASVNVL 215 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLK 221 G +G +K+ AEQ A + L+ Sbjct: 216 GRIIGEGTGTNKKLAEQAGAHQALE 240 >gi|227892635|ref|ZP_04010440.1| ribonuclease III [Lactobacillus ultunensis DSM 16047] gi|227865567|gb|EEJ72988.1| ribonuclease III [Lactobacillus ultunensis DSM 16047] Length = 228 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 96/204 (47%), Gaps = 11/204 (5%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62 + L+ F N LLE+A THSS S+ + + YE+LEFLGD +L L +S L+ H Sbjct: 8 NKLKDEYNIEFNNEKLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAVSDYLYRH 67 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EGEL+ +++V E S+ A E I + + K ++ DV E+ Sbjct: 68 YPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARKRKTLLEDVFEAF 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFR 180 AL+LD G+ F+ + G+F RD KT+LQE V EY V Sbjct: 128 NGALFLDQGMPAVQHFL-HLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVDIEYTVVSE 186 Query: 181 SG-PDHDPRFTVVVEISGLAPAQG 203 S P H F V ++I+ QG Sbjct: 187 SQLPSH---FVVELKINDKVQTQG 207 >gi|239631967|ref|ZP_04674998.1| ribonuclease 3 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066653|ref|YP_003788676.1| dsRNA-specific ribonuclease [Lactobacillus casei str. Zhang] gi|239526432|gb|EEQ65433.1| ribonuclease 3 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439060|gb|ADK18826.1| dsRNA-specific ribonuclease [Lactobacillus casei str. Zhang] Length = 231 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 97/204 (47%), Gaps = 7/204 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 S L +R G F + SLL++A THSS + ++E ERLEFLGD +L L +S L+ Sbjct: 8 SELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYRK 67 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+L+ + V S ++E +I++ K ++ D+ E+ Sbjct: 68 FPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARKRLTLLEDLFEAF 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 ALYLD G + F ++ + + +G+F +D KT LQE V Y + Sbjct: 128 NGALYLDQGRDANIRFAEQIIFPK-IDAGEFSADQDHKTALQEVLQQNGDVAIVYHLLDE 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGM 204 GP H+ +F V VE+ G G Sbjct: 187 QGPAHERQFHVDVEVDGRVLGTGF 210 >gi|291618446|ref|YP_003521188.1| Rnc [Pantoea ananatis LMG 20103] gi|291153476|gb|ADD78060.1| Rnc [Pantoea ananatis LMG 20103] Length = 176 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 3/159 (1%) Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +I+ L++ F EG++S +LV T +++ARE DL +R+ K S Sbjct: 1 MIANALYHRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRES 60 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171 I AD VE+LI ++LD I+ + +++ R + G ++D KT LQE+ + Sbjct: 61 ILADTVEALIGGVFLDSDIQTVEKLILDWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 120 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKR 209 P Y V G HD FT+ ++SG+A P G+ S+R Sbjct: 121 LPSYLVVQVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRR 159 >gi|291572035|dbj|BAI94307.1| ribonuclease III [Arthrospira platensis NIES-39] Length = 246 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 105/198 (53%), Gaps = 12/198 (6%) Query: 5 RYSTLEK---RIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 R LEK R+G + ++ LL+ ALTH S+S Q++YE+LEF+GD ++ L S L Sbjct: 12 RQHQLEKLIERLGLSPQHKIAWQLLDLALTHPSVSS--QDNYEQLEFVGDSVVRLAASEL 69 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + +A GE + + LVS ++++ L ++ V +D + + AD Sbjct: 70 LFETYPNAPVGEFAAVRSILVSDRILAEISESYGLGRYLLVGGSATRDRLGEESRL-ADC 128 Query: 119 VESLIAALYLD-GGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY 175 E+++AALYL +E+ ++D + +RA + + R++ K LQEW + + + P+Y Sbjct: 129 FEAVLAALYLSTNTLELIRPWLDPHLLERATEIFNDPARQNYKAALQEWTQSCYKILPQY 188 Query: 176 KVTFRSGPDHDPRFTVVV 193 KV + RFT V Sbjct: 189 KVNETGYAGDEGRFTASV 206 >gi|220912984|ref|YP_002488293.1| ribonuclease III [Arthrobacter chlorophenolicus A6] gi|219859862|gb|ACL40204.1| Ribonuclease III [Arthrobacter chlorophenolicus A6] Length = 242 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/212 (32%), Positives = 98/212 (46%), Gaps = 20/212 (9%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L KR+G + L ALTH S ++ + ERLEFLGD ILG ++ L+ Sbjct: 7 LLKRLGVTI-DAGTLRLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDSLYRDNPDL 65 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ R +++VS + + R L + FI + + SI AD +E+LI A Sbjct: 66 PEGELAKRRSAVVSTRALANIGRSLGIGEFIYLGQGEKLTEGKNKASILADTMEALIGAT 125 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---------KTELQEWAHAKFGVTPEYKV 177 Y+ IE A V + G +DA KT +QE A ++ T Y V Sbjct: 126 YVSNDIETARQLVMRLI-------GPLLKDAAVLGAGTDWKTSIQELAASRQLGTIHYAV 178 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 +GPDH F+ V+ I G +G SK+ Sbjct: 179 EG-AGPDHARTFSAVLNIGGKPYGKGTGHSKK 209 >gi|226365983|ref|YP_002783766.1| ribonuclease III [Rhodococcus opacus B4] gi|226244473|dbj|BAH54821.1| ribonuclease III [Rhodococcus opacus B4] Length = 252 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 10/205 (4%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 SLL ALTH S ++ + ERLEFLGD +LG+ ++ L+ EG+L+ S+ Sbjct: 30 SLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTEKLYLAHPDKSEGDLAKIRASI 89 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVA 135 V+ ++VAR L + + + SI AD +ES++ A++L+ GI+ A Sbjct: 90 VNMHALAEVARSLGEGGLGAHLLLGKGEEMTGGRDKPSILADGMESILGAIHLEHGIDTA 149 Query: 136 GTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 V + QRA + G D KT LQE + P Y++T +GPDHD FT Sbjct: 150 RRVVLDLFSDLLQRAPRLGAG-LDWKTSLQELTAERGVGVPAYEITA-TGPDHDKEFTAT 207 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAA 217 V + G G+ SK+ AEQ AA+ Sbjct: 208 VIVGGKPLGVGIGRSKKEAEQKAAS 232 >gi|325290420|ref|YP_004266601.1| RNAse III [Syntrophobotulus glycolicus DSM 8271] gi|324965821|gb|ADY56600.1| RNAse III [Syntrophobotulus glycolicus DSM 8271] Length = 259 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 104/211 (49%), Gaps = 8/211 (3%) Query: 12 RIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 ++G LL ALTH S + S +E+ +RLEFLGD +L +I L+ + Sbjct: 39 KLGLENPENQLLYTALTHPSYTFENPASGRENNQRLEFLGDAVLDFVIGEYLYLKYRDKP 98 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EGEL+ ++V+ T ++ AR + + + + + SI AD +E++I A+Y Sbjct: 99 EGELTKMRAAVVNESTLARQARGIGIGQALFLGKGEQYSGGRERASILADALEAVIGAVY 158 Query: 128 LDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 L G E +F+ K + A+ G + D KT LQE A K + Y++ GPDH Sbjct: 159 LQYGFEEVRSFILKMLVPEIEAIDKGNY-GDFKTILQERAQ-KEDMEVSYRIIDEQGPDH 216 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + FT V + +G +K+ AEQ AA Sbjct: 217 NKLFTAGVYVQNNFYGKGTGKTKKEAEQHAA 247 >gi|119717505|ref|YP_924470.1| ribonuclease III [Nocardioides sp. JS614] gi|119538166|gb|ABL82783.1| RNAse III [Nocardioides sp. JS614] Length = 276 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 13/213 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 Y+ L +G + LLE+ALTH S ++ + ERLEFLGD +LG++++ L+ Sbjct: 34 NYAELRAALGDPTLDPELLERALTHRSFAYENGGLPTNERLEFLGDSVLGVVVTETLYLK 93 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG L+ ++V+A ++V R + + +++ SI +D VE++ Sbjct: 94 HPDLSEGRLAKLRAAVVNARALAEVGRRIGVGEHVKLGRGEESTGGRHKASILSDTVEAV 153 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ-----RALKSGKFRRDAKTELQEW-AHAKFGVTPEYK 176 I A++L GG + V + + AL +G D KT LQE A GV PEY Sbjct: 154 IGAVHLSGGFTTSAVVVHRLFDPLIEAASALGAG---LDWKTSLQELSAEHGLGV-PEY- 208 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 V GPDH FT V + G+ SK+ Sbjct: 209 VIEDDGPDHMKTFTAQVRVGEGLYGNGVGRSKK 241 >gi|330444350|ref|YP_004377336.1| ribonuclease III [Chlamydophila pecorum E58] gi|328807460|gb|AEB41633.1| ribonuclease III [Chlamydophila pecorum E58] Length = 231 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 3/215 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 +E ++ + F LL A TH S + E ERLEFLGD +LGL+++ LF F + Sbjct: 10 IESKLNFTFTQPQLLVTAFTHPSYRNESPVPIEDSERLEFLGDAVLGLIVTEHLFLLFPN 69 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG LS SLV A CS A L + + + R S QA++ E+++ A Sbjct: 70 LEEGVLSTIRASLVDASACSGYAESLGVCENLLIGKGERLQNQRGKLSSQANLFEAILGA 129 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +YLDGG+ A + + K LQ++ P+Y+ T + Sbjct: 130 IYLDGGLSPARQLTVPLLPSKEKLQPLMFGNPKNLLQQFTQKHLRTLPKYQATQYVSKEG 189 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V V I +G+ SK+ AE++AA L Sbjct: 190 VMSHHVQVFIHDELWGEGVAHSKKEAEKLAAQHAL 224 >gi|194333018|ref|YP_002014878.1| Ribonuclease III [Prosthecochloris aestuarii DSM 271] gi|194310836|gb|ACF45231.1| Ribonuclease III [Prosthecochloris aestuarii DSM 271] Length = 277 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 98/215 (45%), Gaps = 10/215 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--------SYERLEFLGDRILGLLISTLLF 60 +E+ I A+ + + A TH S H + S +RLEFLGD +L L+IS L+ Sbjct: 44 VEQLIRQPCASVDIYKTAFTHRSFVHDQHQGSSPAPFDSNQRLEFLGDAVLDLIISEHLY 103 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + EG LS + +V+ ++ + A+ + L + + + ++ + AD E Sbjct: 104 KLFPESDEGALSSTRSKIVNRKSLADFAQAIALGNQLIIGESADEEKIRKSEATMADAFE 163 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD G+ F+D + K + K+ L E+A A P+Y + Sbjct: 164 ALIGAIYLDKGLPAVQRFIDDHVMTIVDVPKLATIEHNHKSRLIEFAQANQLSHPQYTII 223 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 G +H FTV V G G K+ AEQ Sbjct: 224 REEGAEHQKTFTVEVSFDGKPFGTGTAARKKDAEQ 258 >gi|87117424|gb|ABD19999.1| Rnc [Shigella flexneri] Length = 178 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 3/172 (1%) Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +I+ L++ F A EG++S +LV T +++ARE +L +R+ K S Sbjct: 3 VIANALYHRFPRADEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRES 62 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171 I AD VE+LI ++LD I+ + +++ R + G ++D KT LQE+ + Sbjct: 63 ILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 122 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 P Y V G HD FT+ ++SGL+ P G S+R AEQ AA + LK+ Sbjct: 123 LPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 174 >gi|296171390|ref|ZP_06852723.1| ribonuclease III [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894165|gb|EFG73924.1| ribonuclease III [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 237 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/181 (35%), Positives = 93/181 (51%), Gaps = 8/181 (4%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S + H + ERLEFLGD +LGL I+ L++ EG+L+ S+V Sbjct: 19 LLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDELYHRHPDRSEGDLAKLRASVV 78 Query: 80 SAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + + + VAR+L L + + + +SI AD +ESL+ A+YL GI+ A Sbjct: 79 NTQALADVARKLSADGLGVHLFLGRGEANTGGADKSSILADGMESLLGAIYLQHGIDTAR 138 Query: 137 TFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + + A + D KT LQE A+ P Y VT +GPDHD FT VV Sbjct: 139 EVILRLFGGLLDAAPTLGAGLDWKTSLQELTAARGMGAPSYVVT-STGPDHDKEFTAVVV 197 Query: 195 I 195 + Sbjct: 198 V 198 >gi|309810296|ref|ZP_07704134.1| ribonuclease III [Dermacoccus sp. Ellin185] gi|308435724|gb|EFP59518.1| ribonuclease III [Dermacoccus sp. Ellin185] Length = 272 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 100/204 (49%), Gaps = 9/204 (4%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + SLL +ALTH S ++ ER EFLGD +LGL+++ L+ A EG L+ + Sbjct: 34 DESLLRRALTHRSFAYENGGIPHNERQEFLGDAVLGLVVTETLYTDQPDAPEGHLAKQRA 93 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE--- 133 ++V++ ++VAR L+L ++ + SI AD E++I ++L GGIE Sbjct: 94 AVVNSRALAEVARGLELGEYLLLGRGELATGGRDKDSILADTTEAVIGTVFLSGGIEAGR 153 Query: 134 -VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 + +D + + D KT LQE A P Y V GPDHD FT Sbjct: 154 RIVHHLIDPLMNRSSTMGAAL--DWKTSLQEATAAAGLGAPTY-VVEGEGPDHDKVFTAT 210 Query: 193 VEISGLAPAQGMDCSKRAAEQVAA 216 V + G G +K++AE +AA Sbjct: 211 VLVDGRTLGAGTGRNKKSAEMIAA 234 >gi|198414531|ref|XP_002121902.1| PREDICTED: similar to ribonuclease III, nuclear, partial [Ciona intestinalis] Length = 1224 Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 19/233 (8%) Query: 5 RYSTLEKRIGYAFANRSLLEKALT----HSSI-SHSYQESYERLEFLGDRILGLLISTLL 59 + + E IG F + LL KA T H +I +H + + RLEFLGD + L+ S L Sbjct: 962 KLTKFEDSIGVKFNHIRLLAKAFTWRNVHENILTHGHNQ---RLEFLGDSVCNLVASAYL 1018 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQAD 117 F + + EG L++ ++V+ T S VA EL + ++ + +D + V + AD Sbjct: 1019 FKLYPTHHEGHLTLLRATVVNGRTQSLVATELGMPEYVICTLDNDSTERVPEWREKNLAD 1078 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWA-----HAKF 169 ++E+ +AAL++D G++ TF+ + R LK + D K+ LQ+ K Sbjct: 1079 LLEAFVAALFIDKGLKYVKTFMKICFFPR-LKEFILTQEWNDPKSCLQQCCLTLRQEGKE 1137 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P Y+++ ++GP H ++ V V G +G S + AE+ AA L + Sbjct: 1138 PQLPTYEISHQTGPSHSRKYVVTVHFKGEEIGKGTGESIQRAERNAARTALNQ 1190 Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 81/208 (38%), Gaps = 64/208 (30%) Query: 4 LRY----STLEKRIGYAFANRSLLEKALTH------------------------------ 29 LRY TLEK+IGY F R L A+ H Sbjct: 726 LRYHLCLRTLEKKIGYEFKERKWLSHAMNHPSCQMNFGLNPDHVRNTLSNCGLRLPRYGD 785 Query: 30 SSISHSYQ-------------------------ESYERLEFLGDRILGLLISTLLFNHFD 64 SSI + Y E ERLEFLGD ++G S LF F Sbjct: 786 SSIHYKYTRKRGITTLIRIMARLGQQRPVLSPIEHNERLEFLGDAVVGYFTSVHLFLLFP 845 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESL 122 EG L+ LV+ + + +A L L F+ + D+C + + A+ E+L Sbjct: 846 DLSEGALTTFRTVLVNNQHLALLAERLQLDEFMLYAHG--PDLCRKADLRHAMANCFEAL 903 Query: 123 IAALYLDGGIEVAGTFVDKY-WKQRALK 149 + A+Y++ G+E A ++ W+ AL+ Sbjct: 904 MGAIYMEAGLERAQRLFGEFLWETEALQ 931 >gi|299136236|ref|ZP_07029420.1| ribonuclease III [Acidobacterium sp. MP5ACTX8] gi|298602360|gb|EFI58514.1| ribonuclease III [Acidobacterium sp. MP5ACTX8] Length = 289 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 120/251 (47%), Gaps = 47/251 (18%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY------------------------ERLE 44 L++ +G+ F LL ALTH S H+Y+ + E+LE Sbjct: 19 LQRLLGHRFTRPELLALALTHRS--HTYEARHGVPTVILPAHPDQRDQRNPPGTDNEQLE 76 Query: 45 FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 FLGD ILGL+++ L+ F + EGEL+ + LVS ++V L+L + + Sbjct: 77 FLGDSILGLVVTEALYREFPQSSEGELTRLRSILVSRARMAEVGVALELGEQLFLGKSAD 136 Query: 105 KDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTFVDKYWKQ------RALKSGK--- 152 ++ ++ A+ VE++IAA+YLD G++ V++Y + RA +G+ Sbjct: 137 QNGGRKKPALLANAVEAIIAAVYLDAGAKGLKAVRAIVERYVLEPDLDTMRAALAGEEGR 196 Query: 153 -FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG------LAPAQGMD 205 RD KT LQE A Y T ++GP H RF+V ++ G LA A+G Sbjct: 197 GALRDHKTVLQERVQASGLGRLRYVDTDQTGPAHQRRFSVEAQLEGEAGTRTLAAAEG-- 254 Query: 206 CSKRAAEQVAA 216 +K+ A+Q AA Sbjct: 255 SNKKEAQQRAA 265 >gi|307448395|pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni gi|307448397|pdb|3O2R|C Chain C, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 170 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 6/141 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ + Y F +++LL ALTH S SY ERLEFLGD +L L++ LF+ F E Sbjct: 31 LEQSLTYEFKDKNLLIHALTHKSFKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 88 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I A++L Sbjct: 89 GDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHL 148 Query: 129 DGGIEVAGT----FVDKYWKQ 145 + G E A T ++K + Q Sbjct: 149 EAGFEFAKTIALRLIEKNFPQ 169 >gi|317474593|ref|ZP_07933867.1| ribonuclease III [Bacteroides eggerthii 1_2_48FAA] gi|316909274|gb|EFV30954.1| ribonuclease III [Bacteroides eggerthii 1_2_48FAA] Length = 306 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 111/225 (49%), Gaps = 13/225 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y K +G+ N ++AL H S S ++ + ERLEFLGD IL ++ +++ Sbjct: 37 YFCFYKILGFFPRNIRFYQQALLHKSTSVRSEKGRPLNNERLEFLGDAILDAIVGDIVYK 96 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF+ +EG L+ + +V ET +++A E+ L ++ S+ S + + + E+ Sbjct: 97 HFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAFEA 152 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKV 177 LI A+YLD G E F+++ + + K R + K++L EW+ K V+ E Sbjct: 153 LIGAIYLDQGYERCKQFMEEKILKNYIDLDKMSRKEVNFKSKLIEWSQKNKMEVSFELIE 212 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F D++P F V I L G SK+ ++Q AA LK+ Sbjct: 213 QFLD-RDYNPMFHTEVLIENLPAGTGTGYSKKESQQNAAQMALKK 256 >gi|119025240|ref|YP_909085.1| ribonuclease III [Bifidobacterium adolescentis ATCC 15703] gi|118764824|dbj|BAF39003.1| ribonuclease III [Bifidobacterium adolescentis ATCC 15703] Length = 262 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 106/207 (51%), Gaps = 13/207 (6%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH ++ ++YERLEFLGD +L L+ + L+ EG+L+ V Sbjct: 18 LLVEALTHRSFSHEHEGAKNYERLEFLGDAVLELVSTETLYKVHPDMNEGQLAKMRAKAV 77 Query: 80 SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134 S E+ S++ARE L + +I + + + +SI D+VESLI A ++ GI+ V Sbjct: 78 SEESLSKIAREKLHVGPYILLGHGEAEQGGADKSSILCDIVESLIGATFIQHGIDEARRV 137 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VV 192 VD + A + D KT L AH P Y+ + +GP++ FT + Sbjct: 138 VHHLVDDTLAEVATEGPAL--DWKTSLTVKAHEMGLPDPHYQTSV-AGPEYALEFTARAI 194 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEV 219 + G G SKR A Q+AAAE+ Sbjct: 195 LGDGGEVIGVGTGSSKRKA-QLAAAEM 220 >gi|229491421|ref|ZP_04385245.1| ribonuclease III [Rhodococcus erythropolis SK121] gi|229321706|gb|EEN87503.1| ribonuclease III [Rhodococcus erythropolis SK121] Length = 257 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 102/211 (48%), Gaps = 14/211 (6%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LL ALTH S ++ + ERLEFLGD +LG+ ++ L+ EG+L+ S+ Sbjct: 30 GLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTENLYLSHPDKSEGDLAKIRASV 89 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVA 135 V+ ++VAR L + + + SI AD +ES++ A++L GIE A Sbjct: 90 VNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADGMESILGAIHLQHGIETA 149 Query: 136 -----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 F D + L +G D KT LQE P Y++T +GPDHD FT Sbjct: 150 RRVVLDLFDDLLTRAPLLGAG---LDWKTSLQELTAEHGAGVPVYEIT-ATGPDHDKEFT 205 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V ISG G+ SK+ AEQ AA+ K Sbjct: 206 ATVLISGKPLGVGVGRSKKEAEQKAASSAWK 236 >gi|303236120|ref|ZP_07322722.1| ribonuclease III [Prevotella disiens FB035-09AN] gi|302483702|gb|EFL46695.1| ribonuclease III [Prevotella disiens FB035-09AN] Length = 293 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 108/218 (49%), Gaps = 13/218 (5%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IG N + AL H S++ ++ + ERLEFLGD IL ++ ++F HF +E Sbjct: 27 IGILPHNLEYYKTALLHKSVARRNEKGRPINNERLEFLGDAILDAIVGDIVFQHFSGKRE 86 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V +T +++A+++ + I S+ R S + + + E+L+ ALYL Sbjct: 87 GFLTNTRSKIVQRDTLNRLAKDMGITRLI--LSNGRS--ASHNSYLGGNAFEALVGALYL 142 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYK-VTFRSGPD 184 D G F+ K + K + K++L EW K V E+K + F D Sbjct: 143 DHGYNACKKFMQKQILGELINIDKVAYKEVNFKSKLLEWTQ-KHKVEIEFKPLNFGKDSD 201 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +P F+ V + +A +G SK+ ++Q AA E ++R Sbjct: 202 GNPTFSFQVILENIACGEGKGYSKKESQQEAAKETMQR 239 >gi|111023481|ref|YP_706453.1| ribonuclease III [Rhodococcus jostii RHA1] gi|110823011|gb|ABG98295.1| ribonuclease III [Rhodococcus jostii RHA1] Length = 252 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 10/205 (4%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 SLL ALTH S ++ + ERLEFLGD +LG+ ++ L+ EG+L+ S+ Sbjct: 30 SLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTEKLYLAHPDKSEGDLAKIRASI 89 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVA 135 V+ ++VAR L + + + SI AD +ES++ A++L+ GI+ A Sbjct: 90 VNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADGMESILGAIHLEHGIDTA 149 Query: 136 GTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 V + QRA + G D KT LQE + P Y++T +GPDHD FT Sbjct: 150 RRVVLDLFSDLLQRAPRLGAG-LDWKTSLQELTAERGVGVPAYEITA-TGPDHDKEFTAT 207 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAA 217 V + G G+ SK+ AEQ AA+ Sbjct: 208 VIVGGKPLGVGIGRSKKEAEQKAAS 232 >gi|332878384|ref|ZP_08446107.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683649|gb|EGJ56523.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 262 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 19/221 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHF 63 Y+ ++ +GYA N S +A TH S + + ++SYERLEFLGD ILG +I+ +F + Sbjct: 33 YNKMKDLLGYAPKNLSFYSEAFTHPSYQYQKATRKSYERLEFLGDAILGAVIADYIFTNA 92 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ + +V +Q+ EL L SF+R ++ +I ++ E+LI Sbjct: 93 PEQDEGYLTKMRSKIVERRNLNQLGEELQLLSFLRTKLTPKQ----LGNNITGNLFEALI 148 Query: 124 AALYLDGGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAK---FGVTPEY 175 A+YLD G + F+++ Y + L+ K+ L EW F E Sbjct: 149 GAIYLDKGYKTCFKFIERKLILPYINIKNLEEKVI--SHKSLLIEWCQKHKRDFSFEAEE 206 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 V RS + F V + G + + SK+ AE+ AA Sbjct: 207 DVEDRSETKY---FVAKVYVEGFSVTRARATSKKRAEESAA 244 >gi|154486628|ref|ZP_02028035.1| hypothetical protein BIFADO_00445 [Bifidobacterium adolescentis L2-32] gi|154084491|gb|EDN83536.1| hypothetical protein BIFADO_00445 [Bifidobacterium adolescentis L2-32] Length = 298 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 106/207 (51%), Gaps = 13/207 (6%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH ++ ++YERLEFLGD +L L+ + L+ EG+L+ V Sbjct: 54 LLVEALTHRSFSHEHEGAKNYERLEFLGDAVLELVSTETLYKVHPDMNEGQLAKMRAKAV 113 Query: 80 SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134 S E+ S++ARE L + +I + + + +SI D+VESLI A ++ GI+ V Sbjct: 114 SEESLSKIAREKLHVGPYILLGHGEAEQGGADKSSILCDIVESLIGATFIQHGIDEARRV 173 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VV 192 VD + A + D KT L AH P Y+ + +GP++ FT + Sbjct: 174 VHHLVDDTLAEVATEGPAL--DWKTSLTVKAHEMGLPDPHYQTSV-AGPEYALEFTARAI 230 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEV 219 + G G SKR A Q+AAAE+ Sbjct: 231 LGDGGEVIGVGTGSSKRKA-QLAAAEM 256 >gi|116495089|ref|YP_806823.1| ribonuclease III [Lactobacillus casei ATCC 334] gi|191638593|ref|YP_001987759.1| ribonuclease III [Lactobacillus casei BL23] gi|227534896|ref|ZP_03964945.1| ribonuclease III [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|116105239|gb|ABJ70381.1| RNAse III [Lactobacillus casei ATCC 334] gi|190712895|emb|CAQ66901.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus casei BL23] gi|227187652|gb|EEI67719.1| ribonuclease III [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 231 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 96/204 (47%), Gaps = 7/204 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 S L +R G F + SLL++A THSS + ++E ERLEFLGD +L L +S L+ Sbjct: 8 SELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYRK 67 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+L+ + V S ++E +I++ K ++ D+ E+ Sbjct: 68 FPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARKRLTLLEDLFEAF 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 ALYLD G + F + + + +G+F +D KT LQE V Y + Sbjct: 128 NGALYLDQGRDANIRFAQQIIFPK-IDAGEFSADQDHKTALQEVLQQNGDVAIVYHLLDE 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGM 204 GP H+ +F V VE+ G G Sbjct: 187 QGPAHERQFHVDVEVDGRVLGTGF 210 >gi|193215269|ref|YP_001996468.1| ribonuclease III [Chloroherpeton thalassium ATCC 35110] gi|193088746|gb|ACF14021.1| Ribonuclease III [Chloroherpeton thalassium ATCC 35110] Length = 269 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/213 (31%), Positives = 98/213 (46%), Gaps = 16/213 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSS------ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 +E G+ +N E ALTH S S S ERLEFLGD +L L+++ L+ Sbjct: 43 IESLTGFPISNVIHYETALTHRSAIDLNVYSKKKFVSNERLEFLGDAVLDLVVAECLYTR 102 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+L+ + LV+A T + AR++ L S + VS + AD E+L Sbjct: 103 FPDYDEGKLTKLRSQLVNARTLASFARKIHLGSLLIVSEAAEAIGVRDSETTLADAFEAL 162 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKFGVTPEYK 176 + A+YLD F++K + L+ FR + K+ L E+A A P Y Sbjct: 163 VGAIYLDSDYLQTKRFLEK----KILEGIDFRELSSTDNNFKSVLLEYAQAHHLEIPTYT 218 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 V GP H FTV V I +G+ SK+ Sbjct: 219 VIDEEGPSHKKVFTVAVYIGDEMLGKGVGRSKK 251 >gi|108798917|ref|YP_639114.1| ribonuclease III [Mycobacterium sp. MCS] gi|119868032|ref|YP_937984.1| ribonuclease III [Mycobacterium sp. KMS] gi|126434517|ref|YP_001070208.1| ribonuclease III [Mycobacterium sp. JLS] gi|108769336|gb|ABG08058.1| RNAse III [Mycobacterium sp. MCS] gi|119694121|gb|ABL91194.1| RNAse III [Mycobacterium sp. KMS] gi|126234317|gb|ABN97717.1| RNAse III [Mycobacterium sp. JLS] Length = 234 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 97/193 (50%), Gaps = 14/193 (7%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S S H + ERLEFLGD +LGL I+ LF+ EG+L+ S+V Sbjct: 20 LLTIALTHRSYSYEHGGLPTNERLEFLGDSVLGLTITEELFHRHPDRSEGDLAKLRASIV 79 Query: 80 SAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + + V R+L L S++ + + +SI AD VESL+ A+Y+ G+ V Sbjct: 80 NTGALADVGRKLSDDGLGSYLLLGKGEESSGGADKSSILADGVESLLGAIYVQHGLTVTR 139 Query: 137 TFVDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 + + + L +G D K+ LQE A+ P Y VT +GPDHD FT Sbjct: 140 EVILRLFAGLLDTAPTLGAG---LDWKSSLQELTAARGLGAPHYVVT-STGPDHDKEFTA 195 Query: 192 VVEISGLAPAQGM 204 V ++ + +G+ Sbjct: 196 TVLVTDIEYGRGV 208 >gi|87117520|gb|ABD20063.1| Rnc [Shigella boydii] Length = 178 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 3/172 (1%) Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +I+ +L++ F EG++S +LV T +++ARE +L +R+ K S Sbjct: 3 VIANVLYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRES 62 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171 I AD VE+LI ++LD I+ + +++ R + G ++D KT LQE+ + Sbjct: 63 ILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 122 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 P Y V G HD FT+ ++SGL+ P G S+R AEQ AA + LK+ Sbjct: 123 LPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 174 >gi|327382635|gb|AEA54111.1| ribonuclease III [Lactobacillus casei LC2W] gi|327385829|gb|AEA57303.1| ribonuclease III [Lactobacillus casei BD-II] Length = 231 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 96/204 (47%), Gaps = 7/204 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 S L +R G F + SLL++A THSS + ++E ERLEFLGD +L L +S L+ Sbjct: 8 SELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYRK 67 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+L+ + V S ++E +I++ K ++ D+ E+ Sbjct: 68 FPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARKRLTLLEDLFEAF 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 ALYLD G + F + + + +G+F +D KT LQE V Y + Sbjct: 128 NGALYLDQGRDANIRFAQQIIFPK-IDAGEFSDDQDHKTALQEVLQQNGDVAIVYHLLDE 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGM 204 GP H+ +F V VE+ G G Sbjct: 187 QGPAHERQFHVDVEVDGRVLGTGF 210 >gi|294791394|ref|ZP_06756551.1| ribonuclease III [Scardovia inopinata F0304] gi|294457865|gb|EFG26219.1| ribonuclease III [Scardovia inopinata F0304] Length = 271 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/200 (33%), Positives = 105/200 (52%), Gaps = 6/200 (3%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 L +ALTH S + H +YERLEFLGD +L L+I+ L+ + + EG++S + +V Sbjct: 38 LFVEALTHRSFTNEHPLAHNYERLEFLGDAVLELVITETLYKNHPTYSEGQMSRIRSKVV 97 Query: 80 SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 S E+ S++AR+ L ++ FI + ++D ++ SI DVVESLI A++++ GI+ A Sbjct: 98 SEESLSEIARDKLKISQFILLGIGEQRDKGAYKPSILCDVVESLIGAVFIEQGIDKARQV 157 Query: 139 VDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + + D KT + AH Y++ SGP++ FT + I+ Sbjct: 158 IHHLLDDNLAFYTTEGPALDWKTAIVIKAHKMNLGEVSYRMEM-SGPENHLEFTAYLLIN 216 Query: 197 GLAPAQGMDCSKRAAEQVAA 216 A G SKR A+ AA Sbjct: 217 DQDVAWGRGSSKRKAQLDAA 236 >gi|108804222|ref|YP_644159.1| RNAse III [Rubrobacter xylanophilus DSM 9941] gi|108765465|gb|ABG04347.1| RNAse III [Rubrobacter xylanophilus DSM 9941] Length = 233 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 99/205 (48%), Gaps = 12/205 (5%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 L ++ALTH S++ Y S RLEFLGD IL ++ L+F+ + EG+L+ LV Sbjct: 27 PLRKRALTHPSVADPYH-SNGRLEFLGDSILNHRVAELVFHSYPELLEGDLTRIRAHLVR 85 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + V R L I S S+ AD VE++I A YL V T +D Sbjct: 86 KSFLASVGRSEGLEEMIESSV--------INDSVIADTVEAIIGAAYLIDKNLVLRT-ID 136 Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + + + + R D KT LQE A+ G+ P Y+V + GP H P F V + G Sbjct: 137 EIFNPAEVDTDELR-DWKTLLQETLQAE-GLRPTYRVISKQGPPHRPVFISGVSVDGEEV 194 Query: 201 AQGMDCSKRAAEQVAAAEVLKREGI 225 A G S + +EQ AA L+ G+ Sbjct: 195 ATGRGSSIKQSEQAAARAALEILGV 219 >gi|162447098|ref|YP_001620230.1| dsRNA-specific ribonuclease III [Acholeplasma laidlawii PG-8A] gi|161985205|gb|ABX80854.1| dsRNA-specific ribonuclease III [Acholeplasma laidlawii PG-8A] Length = 219 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/200 (33%), Positives = 100/200 (50%), Gaps = 9/200 (4%) Query: 25 KALTHSSISHSYQESY-ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +ALTH+S +H Q + ERLEFLGD ++ L++ST LF H D + +G L+ R V E Sbjct: 20 QALTHTSYAHENQTDHNERLEFLGDAVIELMMSTYLFTH-DQSNQGVLTKRRAQAVREEA 78 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 A+++DL S +R+ + + S + AD E+ ALY+D G + +K Sbjct: 79 LVLYAQKMDLESKMRLGNGEQIAKPSMI----ADAFEAFFGALYMDQGFDKTYEIFNKVV 134 Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-SGLAPAQ 202 L + +D KT+LQE+ + + YK GP H P F V + + + Sbjct: 135 IPH-LNLVEHIKDYKTQLQEFIQLERK-SLSYKTVKVGGPSHRPIFKSEVFLENSIMLGT 192 Query: 203 GMDCSKRAAEQVAAAEVLKR 222 G S + AEQ AA E L + Sbjct: 193 GQGSSTKEAEQNAAKEALSK 212 >gi|83589801|ref|YP_429810.1| ribonuclease III [Moorella thermoacetica ATCC 39073] gi|123524697|sp|Q2RJX2|RNC_MOOTA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|83572715|gb|ABC19267.1| RNAse III [Moorella thermoacetica ATCC 39073] Length = 233 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 5/167 (2%) Query: 23 LEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 L+ ALTH + + H +RLEFLGD +LGL+++T L+ HF EG+L+ ++V Sbjct: 26 LDLALTHPTYAFEHHLPGDNQRLEFLGDAVLGLVVATYLYQHFPQLPEGDLTRMRAAVVC 85 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + +VAR L + +R+ S AD +E++I ++YL GG E+A FV Sbjct: 86 EASLVKVARRLRVGDLLRLGQGEEHSGGRERPSNLADAMEAIIGSVYLSGGYELARDFVL 145 Query: 141 KYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 + + L F D+K+ LQE+ ++ YK+ GPDH Sbjct: 146 QIFTPALEILSDTSF-IDSKSALQEFVQSQGTENVVYKILEEWGPDH 191 >gi|71042598|pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii From Mycobacterium Tuberculosis Length = 242 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/181 (35%), Positives = 92/181 (50%), Gaps = 8/181 (4%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S ++ + ERLEFLGD +LGL I+ LF+ EG+L+ S+V Sbjct: 22 LLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVV 81 Query: 80 SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + + + VAR L L + + + +SI AD +ESL+ A+YL G+E A Sbjct: 82 NTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAR 141 Query: 137 TFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + + A + D KT LQE A+ P Y VT +GPDHD FT VV Sbjct: 142 EVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVT-STGPDHDKEFTAVVV 200 Query: 195 I 195 + Sbjct: 201 V 201 >gi|15610062|ref|NP_217441.1| ribonuclease III [Mycobacterium tuberculosis H37Rv] gi|15842471|ref|NP_337508.1| ribonuclease III [Mycobacterium tuberculosis CDC1551] gi|31794102|ref|NP_856595.1| ribonuclease III [Mycobacterium bovis AF2122/97] gi|121638807|ref|YP_979031.1| ribonuclease III [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662771|ref|YP_001284294.1| ribonuclease III [Mycobacterium tuberculosis H37Ra] gi|148824115|ref|YP_001288869.1| ribonuclease III [Mycobacterium tuberculosis F11] gi|167969555|ref|ZP_02551832.1| ribonuclease III [Mycobacterium tuberculosis H37Ra] gi|215404901|ref|ZP_03417082.1| ribonuclease III [Mycobacterium tuberculosis 02_1987] gi|215412768|ref|ZP_03421480.1| ribonuclease III [Mycobacterium tuberculosis 94_M4241A] gi|215428370|ref|ZP_03426289.1| ribonuclease III [Mycobacterium tuberculosis T92] gi|215431873|ref|ZP_03429792.1| ribonuclease III [Mycobacterium tuberculosis EAS054] gi|215447189|ref|ZP_03433941.1| ribonuclease III [Mycobacterium tuberculosis T85] gi|218754678|ref|ZP_03533474.1| ribonuclease III [Mycobacterium tuberculosis GM 1503] gi|224991299|ref|YP_002645988.1| ribonuclease III [Mycobacterium bovis BCG str. Tokyo 172] gi|253797986|ref|YP_003030987.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 1435] gi|254365562|ref|ZP_04981607.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis str. Haarlem] gi|254551999|ref|ZP_05142446.1| ribonuclease III [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187945|ref|ZP_05765419.1| ribonuclease III [Mycobacterium tuberculosis CPHL_A] gi|260202061|ref|ZP_05769552.1| ribonuclease III [Mycobacterium tuberculosis T46] gi|260206245|ref|ZP_05773736.1| ribonuclease III [Mycobacterium tuberculosis K85] gi|289444482|ref|ZP_06434226.1| ribonuclease III [Mycobacterium tuberculosis T46] gi|289448592|ref|ZP_06438336.1| ribonuclease III rnc [Mycobacterium tuberculosis CPHL_A] gi|289553284|ref|ZP_06442494.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 605] gi|289575632|ref|ZP_06455859.1| ribonuclease III rnc [Mycobacterium tuberculosis K85] gi|289746725|ref|ZP_06506103.1| ribonuclease III [Mycobacterium tuberculosis 02_1987] gi|289751594|ref|ZP_06510972.1| ribonuclease III rnc [Mycobacterium tuberculosis T92] gi|289755039|ref|ZP_06514417.1| ribonuclease III [Mycobacterium tuberculosis EAS054] gi|289759048|ref|ZP_06518426.1| ribonuclease III [Mycobacterium tuberculosis T85] gi|289763102|ref|ZP_06522480.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis GM 1503] gi|297635545|ref|ZP_06953325.1| ribonuclease III [Mycobacterium tuberculosis KZN 4207] gi|297732544|ref|ZP_06961662.1| ribonuclease III [Mycobacterium tuberculosis KZN R506] gi|298526395|ref|ZP_07013804.1| ribonuclease III [Mycobacterium tuberculosis 94_M4241A] gi|306777216|ref|ZP_07415553.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu001] gi|306781126|ref|ZP_07419463.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu002] gi|306785762|ref|ZP_07424084.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu003] gi|306789802|ref|ZP_07428124.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu004] gi|306794615|ref|ZP_07432917.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu005] gi|306798860|ref|ZP_07437162.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu006] gi|306804705|ref|ZP_07441373.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu008] gi|306808897|ref|ZP_07445565.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu007] gi|306968996|ref|ZP_07481657.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu009] gi|306973333|ref|ZP_07485994.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu010] gi|307081039|ref|ZP_07490209.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu011] gi|307085639|ref|ZP_07494752.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu012] gi|313659876|ref|ZP_07816756.1| ribonuclease III [Mycobacterium tuberculosis KZN V2475] gi|54039242|sp|P66667|RNC_MYCBO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54041614|sp|P66666|RNC_MYCTU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|1405961|emb|CAA98974.1| PROBABLE RIBONUCLEASE III RNC (RNASE III) [Mycobacterium tuberculosis H37Rv] gi|13882776|gb|AAK47322.1| ribonuclease III [Mycobacterium tuberculosis CDC1551] gi|31619697|emb|CAD96637.1| PROBABLE RIBONUCLEASE III RNC (RNASE III) [Mycobacterium bovis AF2122/97] gi|121494455|emb|CAL72936.1| Probable ribonuclease III rnc (rnase III) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151075|gb|EBA43120.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis str. Haarlem] gi|148506923|gb|ABQ74732.1| ribonuclease III [Mycobacterium tuberculosis H37Ra] gi|148722642|gb|ABR07267.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis F11] gi|224774414|dbj|BAH27220.1| ribonuclease III [Mycobacterium bovis BCG str. Tokyo 172] gi|253319489|gb|ACT24092.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 1435] gi|289417401|gb|EFD14641.1| ribonuclease III [Mycobacterium tuberculosis T46] gi|289421550|gb|EFD18751.1| ribonuclease III rnc [Mycobacterium tuberculosis CPHL_A] gi|289437916|gb|EFD20409.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 605] gi|289540063|gb|EFD44641.1| ribonuclease III rnc [Mycobacterium tuberculosis K85] gi|289687253|gb|EFD54741.1| ribonuclease III [Mycobacterium tuberculosis 02_1987] gi|289692181|gb|EFD59610.1| ribonuclease III rnc [Mycobacterium tuberculosis T92] gi|289695626|gb|EFD63055.1| ribonuclease III [Mycobacterium tuberculosis EAS054] gi|289710608|gb|EFD74624.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis GM 1503] gi|289714612|gb|EFD78624.1| ribonuclease III [Mycobacterium tuberculosis T85] gi|298496189|gb|EFI31483.1| ribonuclease III [Mycobacterium tuberculosis 94_M4241A] gi|308214363|gb|EFO73762.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu001] gi|308326021|gb|EFP14872.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu002] gi|308329542|gb|EFP18393.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu003] gi|308333690|gb|EFP22541.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu004] gi|308337033|gb|EFP25884.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu005] gi|308340847|gb|EFP29698.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu006] gi|308344741|gb|EFP33592.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu007] gi|308348661|gb|EFP37512.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu008] gi|308353417|gb|EFP42268.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu009] gi|308357236|gb|EFP46087.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu010] gi|308361245|gb|EFP50096.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu011] gi|308364828|gb|EFP53679.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu012] gi|323718456|gb|EGB27628.1| ribonuclease III rnc [Mycobacterium tuberculosis CDC1551A] gi|326904540|gb|EGE51473.1| ribonuclease III rnc [Mycobacterium tuberculosis W-148] gi|328457760|gb|AEB03183.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 4207] Length = 240 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/181 (35%), Positives = 92/181 (50%), Gaps = 8/181 (4%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S ++ + ERLEFLGD +LGL I+ LF+ EG+L+ S+V Sbjct: 20 LLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVV 79 Query: 80 SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + + + VAR L L + + + +SI AD +ESL+ A+YL G+E A Sbjct: 80 NTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAR 139 Query: 137 TFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + + A + D KT LQE A+ P Y VT +GPDHD FT VV Sbjct: 140 EVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVT-STGPDHDKEFTAVVV 198 Query: 195 I 195 + Sbjct: 199 V 199 >gi|116671047|ref|YP_831980.1| ribonuclease III [Arthrobacter sp. FB24] gi|116611156|gb|ABK03880.1| RNAse III [Arthrobacter sp. FB24] Length = 240 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 102/210 (48%), Gaps = 16/210 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L KR+G + + L ALTH S ++Y+ + ERLEFLGD ILG ++ L+ Sbjct: 8 LLKRLGVSI-DAGTLRLALTHRS--YAYENGGIPTNERLEFLGDSILGFSVTDALYRDNP 64 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+L+ R +++VS + + R L + +I + + SI AD +E+LI Sbjct: 65 ALPEGDLAKRRSAVVSTRALAGIGRSLGIGEYIYLGQGEKLTDGKNKASILADTMEALIG 124 Query: 125 ALYLDGGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 A Y+ IE A V + AL +G D KT +QE A ++ + Y V Sbjct: 125 ATYVSNDIETARQLVMRLIGPLLQDAAALGAGT---DWKTSIQELAASRQLGSIYYAVEG 181 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SGPDH F V+ I G QG SK+ Sbjct: 182 -SGPDHARTFVAVLRIGGTDYGQGAGRSKK 210 >gi|332291744|ref|YP_004430353.1| Ribonuclease III [Krokinobacter diaphorus 4H-3-7-5] gi|332169830|gb|AEE19085.1| Ribonuclease III [Krokinobacter diaphorus 4H-3-7-5] Length = 245 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 12/211 (5%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IG+ EKA TH S+ + +YERLEFLGD +LG +I+ LFN E Sbjct: 26 IGFKPKEIKYYEKAFTHRSLGLKKADGNPLNYERLEFLGDAMLGSVIAAHLFNAVQGGNE 85 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +VS + +++ R+L+L ++R S L +F +I ++ E+L+ A+YL Sbjct: 86 GYLTKMRSKVVSRKHLNELGRDLNLVRYVRASIPLD----NFGVNIHGNLFEALVGAIYL 141 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D G + F+ K + + K K+ L EW K T +++ +G D Sbjct: 142 DRGYKYCEKFIAKRVIEPYVDIEKLEGRIISYKSVLIEWCQ-KEKRTFKFETFEDTGQDT 200 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 F V + I G A+ SK+ AE++A+ Sbjct: 201 VKHFGVKLFIDGKVVAKARATSKKKAEEIAS 231 >gi|254822109|ref|ZP_05227110.1| ribonuclease III [Mycobacterium intracellulare ATCC 13950] Length = 235 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 94/182 (51%), Gaps = 8/182 (4%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S + H + ERLEFLGD +LGL I+ L++ EG+L+ S+V Sbjct: 19 LLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDELYHRHPDRSEGDLAKLRASVV 78 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVAG 136 + + + V R+L R + + +SI AD +ESL+ A+YL+ GI+VA Sbjct: 79 NTQALADVGRKLCEGGLGVHLLLGRGEANTGGADKSSILADGMESLLGAIYLEHGIDVAR 138 Query: 137 TFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + + A + D KT LQE A+ P Y VT +GPDHD FT VV Sbjct: 139 EVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARSMGAPSYVVT-STGPDHDKEFTAVVV 197 Query: 195 IS 196 ++ Sbjct: 198 VA 199 >gi|90101612|sp|Q8A2E8|RNC_BACTN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 311 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 109/220 (49%), Gaps = 17/220 (7%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ N + E+AL H S + ++ + ERLEFLGD IL ++ +++ F+ +E Sbjct: 27 LGFYPHNIQIYEQALLHKSSAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYKRFEGKRE 86 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V ET +++A E+ L I+ S+ S + + + E+ I A+YL Sbjct: 87 GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 142 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184 D G E F+++ R + K R + K++L EW+ K V+ E F D Sbjct: 143 DQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL---D 199 Query: 185 HD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 HD P F V I GL G SK+ ++Q AA +K+ Sbjct: 200 HDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 239 >gi|317129239|ref|YP_004095521.1| ribonuclease III [Bacillus cellulosilyticus DSM 2522] gi|315474187|gb|ADU30790.1| ribonuclease III [Bacillus cellulosilyticus DSM 2522] Length = 253 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 11/212 (5%) Query: 19 NRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 N + +A THSS + ++ + ERLEFLGD +L L IS LF ++ + EGE++ Sbjct: 42 NVDIYIQAFTHSSYVNEHRIRPHDDNERLEFLGDAVLELAISQYLFKNYANMSEGEMTKL 101 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 ++V + +++A EL + + ++ ADV ES + ALYLD G++ Sbjct: 102 RAAIVCEPSLAKIADELKFGERVLLGKGEEMTGGRKRPALLADVFESFVGALYLDLGMDA 161 Query: 135 AGTF--VDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 F V+ Y K + G F D K++LQE + +YK+ GP H F Sbjct: 162 VYDFLKVNVYPK---IADGAFSDMMDYKSQLQELVQREGQGQIQYKIVQERGPAHAREFV 218 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + G SK+ AEQ+AA + L++ Sbjct: 219 SEVWLENKLLGIGAGRSKKEAEQMAAQKALEK 250 >gi|254431519|ref|ZP_05045222.1| ribonuclease III [Cyanobium sp. PCC 7001] gi|197625972|gb|EDY38531.1| ribonuclease III [Cyanobium sp. PCC 7001] Length = 245 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 102/204 (50%), Gaps = 9/204 (4%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +E+ALTH+S + ++ERLEFLGD +L L S L H G S + LVS Sbjct: 36 IEEALTHTSARQ--RGNHERLEFLGDAVLRLAASEYLHRHHPQLGVGSQSALRSQLVSDR 93 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG--IEVAGTFVD 140 +++A L + R+ R D T ++A++ E+LI A+Y G +E T++ Sbjct: 94 WLAELADSCGLETVWRIGPMARGDRAGIAT-VRAELCEALIGAVYRCWGDSLEPVLTWLT 152 Query: 141 KYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEI-S 196 +W+Q + L + R + K+ LQEW + P Y RS DP RF+ + + + Sbjct: 153 PHWQQASQELLADPDRHNWKSALQEWTQGQGLGLPSYSCEERSTLHADPRRFSCRLTLGA 212 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVL 220 G G S+RAAEQ AA + L Sbjct: 213 GNESWDGWGPSRRAAEQDAARQAL 236 >gi|317506412|ref|ZP_07964217.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974] gi|316255292|gb|EFV14557.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974] Length = 347 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 105/204 (51%), Gaps = 8/204 (3%) Query: 21 SLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 SLL ALTH S ++ + E + ERLEFLGD +LGL+I+ L+ +EGEL+ ++ Sbjct: 127 SLLTLALTHRSWANEHGEVPTNERLEFLGDTVLGLVITEQLYVTHPDKEEGELAKLRANI 186 Query: 79 VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 VS + +++AR L L ++ + + + SI AD +E+L+ A+++ GIE A Sbjct: 187 VSTISLAEIARRLGKGGLGEYLYLGNGEMRTGGKNKDSILADGLEALLGAVHIQYGIEKA 246 Query: 136 GTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 V ++ + D KT LQE A+ G+ P +GPDH+ FT VV Sbjct: 247 REVVLHLCAPLLARAARLGAGLDWKTSLQELC-ARRGLRPPVYEVAEAGPDHEKLFTAVV 305 Query: 194 EISGLAPAQGMDCSKRAAEQVAAA 217 I + G +K+ AE AA Sbjct: 306 LIEEKSLGTGSGRTKKEAEMKAAG 329 >gi|29348766|ref|NP_812269.1| ribonuclease III [Bacteroides thetaiotaomicron VPI-5482] gi|253568891|ref|ZP_04846301.1| ribonuclease III [Bacteroides sp. 1_1_6] gi|29340672|gb|AAO78463.1| ribonuclease III [Bacteroides thetaiotaomicron VPI-5482] gi|251840910|gb|EES68991.1| ribonuclease III [Bacteroides sp. 1_1_6] Length = 324 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 109/220 (49%), Gaps = 17/220 (7%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ N + E+AL H S + ++ + ERLEFLGD IL ++ +++ F+ +E Sbjct: 40 LGFYPHNIQIYEQALLHKSSAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYKRFEGKRE 99 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V ET +++A E+ L I+ S+ S + + + E+ I A+YL Sbjct: 100 GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 155 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184 D G E F+++ R + K R + K++L EW+ K V+ E F D Sbjct: 156 DQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL---D 212 Query: 185 HD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 HD P F V I GL G SK+ ++Q AA +K+ Sbjct: 213 HDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252 >gi|289550987|ref|YP_003471891.1| Ribonuclease III [Staphylococcus lugdunensis HKU09-01] gi|315658482|ref|ZP_07911354.1| ribonuclease III [Staphylococcus lugdunensis M23590] gi|289180519|gb|ADC87764.1| Ribonuclease III [Staphylococcus lugdunensis HKU09-01] gi|315496811|gb|EFU85134.1| ribonuclease III [Staphylococcus lugdunensis M23590] Length = 243 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 11/220 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 R+ +G F N L ++A +HSS + + E ERLEFLGD +L + +S LF Sbjct: 16 RFEQKMNELGIHFDNIKLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLEVTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG L+ ++V + A ++ L I + K S+ +D E Sbjct: 76 DKHPNLPEGNLTKMRATIVCEPSLVIFANKIQLNQLILLGKGEEKTGGRTRPSLISDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + + ALYLD G+ F +K Y + L D KT+ QE+ H++ Y+ Sbjct: 136 AFVGALYLDQGLGAVWHFAEKVIFPYVEDDELIG---VVDFKTQFQEFVHSQNKGDVMYR 192 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + GP H FT V + A A G +K+ +EQ AA Sbjct: 193 LVKEEGPAHHRLFTSEVILEQQAIAHGQGKTKKESEQKAA 232 >gi|320528410|ref|ZP_08029572.1| ribonuclease III [Solobacterium moorei F0204] gi|320131324|gb|EFW23892.1| ribonuclease III [Solobacterium moorei F0204] Length = 226 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 6/208 (2%) Query: 19 NRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 N ++++A HSS +H ++ ERLEF+GD +L L S ++ + EG ++ Sbjct: 18 NAKMIQQAFIHSSYAHEHKNKNDNERLEFMGDAVLQLWSSNAIYPL--NLSEGHMTRLRA 75 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 LV + + R+L L ++ + S K +I AD+ E+ + AL+LD G++ Sbjct: 76 QLVCEKALAIYGRQLHLNDYLLLGSGEEKTGGRNKDAIIADMFEAFLGALFLDQGMDAVD 135 Query: 137 TFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + R D KT+LQE+ + T +Y++ +GP + P F + V Sbjct: 136 NILSEVITPRLAHPEDVGVIHDYKTKLQEYVQSDSRQTVKYELVSETGPSNAPEFVMNVL 195 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + GL G SK+ AEQ AA ++ Sbjct: 196 VDGLVLGTGSGQSKKQAEQNAARNAFEK 223 >gi|87117463|gb|ABD20025.1| Rnc [Shigella dysenteriae] Length = 178 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 3/172 (1%) Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +I+ L++ F EG++S +LV T +++ARE +L +R+ K S Sbjct: 3 VIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRES 62 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171 I AD VE+LI ++LD I+ + +++ R + G ++D KT LQE+ + Sbjct: 63 ILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 122 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 P Y V G HD FT+ ++SGL+ P G S+R AEQ AA + LK+ Sbjct: 123 LPTYMVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 174 >gi|148238540|ref|YP_001223927.1| ribonuclease III [Synechococcus sp. WH 7803] gi|147847079|emb|CAK22630.1| Ribonuclease III [Synechococcus sp. WH 7803] Length = 240 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 99/203 (48%), Gaps = 6/203 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +ALTH+S +E+LEFLGD +L L S + + GE S LVS Sbjct: 32 LNEALTHTS--SGLNPHHEQLEFLGDAVLRLAASEFIATAYPQMPVGERSSLRAQLVSDR 89 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 +Q+ + +A + R+ D + T I+A++ E+LI A+Y G++ ++ + Sbjct: 90 WLAQLGEAIAIAQWWRIGPKASGDPSAAAT-IRAELSEALIGAVYRIAGLQTVQAWLTPH 148 Query: 143 WKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLA 199 W+ A+ + +R ++K+ LQEW+ + P Y + S DP RF V + Sbjct: 149 WQTSAEAVLADPYRGNSKSALQEWSQGQGLGLPRYSCSEVSQSHGDPKRFQASVTLPPDL 208 Query: 200 PAQGMDCSKRAAEQVAAAEVLKR 222 A G S+R AEQ AA ++ + Sbjct: 209 SAAGWGGSRREAEQQAAEALMAQ 231 >gi|312131056|ref|YP_003998396.1| rnase iii [Leadbetterella byssophila DSM 17132] gi|311907602|gb|ADQ18043.1| RNAse III [Leadbetterella byssophila DSM 17132] Length = 242 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 103/217 (47%), Gaps = 23/217 (10%) Query: 13 IGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +G +N L + A H+S S ++ES ERLEFLGD +LGL++ LF + Sbjct: 24 VGAKPSNPLLYQLAFRHTSASKESMFKGFRESNERLEFLGDAVLGLIVGEYLFKKYPFKN 83 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ + +V+ E+ + V R L L + I SD ++ TS+ D +E+LI A+Y Sbjct: 84 EGFLTEIRSRIVNRESLNNVGRRLGLENLI--ESDGARNFQR--TSLLGDAMEALIGAIY 139 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDA--------KTELQEWAHAKFGVTPEYKVTF 179 LD G + FV L S F D K+ + WA ++ G E+ + Sbjct: 140 LDKGYKFTQKFV-----VSKLLSNHFDLDEVISNNTNYKSSILSWAQSE-GKKVEFVIVE 193 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 G +H F V + G + G +K+ AEQ A+ Sbjct: 194 EKGKNHSREFVAQVLVDGEIISNGNGWNKKKAEQDAS 230 >gi|296393287|ref|YP_003658171.1| ribonuclease III [Segniliparus rotundus DSM 44985] gi|296180434|gb|ADG97340.1| ribonuclease III [Segniliparus rotundus DSM 44985] Length = 338 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 8/204 (3%) Query: 21 SLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 SL+ ALTH S ++ + E + ERLEFLGD +LGL+++ L+ +EGEL+ ++ Sbjct: 118 SLMTLALTHRSWANEHGEVPTNERLEFLGDTVLGLVVTEQLYVTHPDKEEGELAKLRANI 177 Query: 79 VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 VS + +++AR L L ++ + + + SI AD +E++I A+++ GIE A Sbjct: 178 VSTASLAEIARRLGKGGLGEYLYLGNGEVRTGGKNKDSILADGLEAVIGAVHIQYGIEKA 237 Query: 136 GTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 V ++ + D KT LQE + P Y+VT +GPDH+ FT VV Sbjct: 238 REVVLALCAPLLARAARLGAGLDWKTSLQELCARRGLRPPVYEVT-EAGPDHEKLFTAVV 296 Query: 194 EISGLAPAQGMDCSKRAAEQVAAA 217 I + G +K+ AE AA Sbjct: 297 LIEEKSLGTGSGRTKKEAEMKAAG 320 >gi|183601845|ref|ZP_02963214.1| ribonuclease III [Bifidobacterium animalis subsp. lactis HN019] gi|219682760|ref|YP_002469143.1| ribonuclease III [Bifidobacterium animalis subsp. lactis AD011] gi|241190336|ref|YP_002967730.1| ribonuclease III [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195742|ref|YP_002969297.1| ribonuclease III [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218730|gb|EDT89372.1| ribonuclease III [Bifidobacterium animalis subsp. lactis HN019] gi|219620410|gb|ACL28567.1| ribonuclease III [Bifidobacterium animalis subsp. lactis AD011] gi|240248728|gb|ACS45668.1| ribonuclease III [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250296|gb|ACS47235.1| ribonuclease III [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793323|gb|ADG32858.1| ribonuclease III [Bifidobacterium animalis subsp. lactis V9] Length = 258 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 106/210 (50%), Gaps = 21/210 (10%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH ++ ++YERLEFLGD +L +++ LF + EG+L+ V Sbjct: 30 LLVEALTHRSFSHEHEGVKNYERLEFLGDAVLEFVVTETLFKQYPDKSEGQLAKIRAKAV 89 Query: 80 SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI----EV 134 S E+ S +AR+ L + +I + + + +SI D+VESLI A ++ G+ EV Sbjct: 90 SEESLSAIARDRLHVGPYILLGHGESEQGGAEKSSILCDIVESLIGATFVQYGVDKAREV 149 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV- 193 VD + A + D KT L AH P Y+++ GP++ FT Sbjct: 150 VHHLVDDTLAEVATEGPAL--DWKTSLTVKAHEMGLPEPRYQMSV-GGPEYALEFTAFAM 206 Query: 194 -----EISGLAPAQGMDCSKRAAEQVAAAE 218 E+ G+ G SKR A Q+AAAE Sbjct: 207 LGDSKEVLGV----GNGSSKRKA-QLAAAE 231 >gi|257068990|ref|YP_003155245.1| RNAse III [Brachybacterium faecium DSM 4810] gi|256559808|gb|ACU85655.1| RNAse III [Brachybacterium faecium DSM 4810] Length = 250 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 8/213 (3%) Query: 14 GYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 G + LLE +LTH S S+ ERLEFLGD +L L ++ L+ + EG+L Sbjct: 27 GADLQDSGLLELSLTHRSYSYENDGLPHNERLEFLGDAVLQLAVTEHLYAAHPTLPEGDL 86 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + R + VS + +A +LDL +++R+ SI AD E++I A++L G Sbjct: 87 ARRRAATVSTRALAVIASKLDLGAYVRLGRGEDLTGGRAKASILADTTEAVIGAVHLALG 146 Query: 132 IEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +V+ FV + L S +F D K+ LQE A A+ G Y ++ SG +H Sbjct: 147 QDVSRRFVLDLLRP-LLDSDEFLEAGYDFKSRLQEIAAAE-GENVTYALS-ESGLEHQKV 203 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +T V + G+ A+G SK+ AE AA ++ Sbjct: 204 YTATVTVPGIVTARGDGASKKDAELAAAQNAVR 236 >gi|289178059|gb|ADC85305.1| Ribonuclease III [Bifidobacterium animalis subsp. lactis BB-12] Length = 270 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 106/210 (50%), Gaps = 21/210 (10%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH ++ ++YERLEFLGD +L +++ LF + EG+L+ V Sbjct: 42 LLVEALTHRSFSHEHEGVKNYERLEFLGDAVLEFVVTETLFKQYPDKSEGQLAKIRAKAV 101 Query: 80 SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI----EV 134 S E+ S +AR+ L + +I + + + +SI D+VESLI A ++ G+ EV Sbjct: 102 SEESLSAIARDRLHVGPYILLGHGESEQGGAEKSSILCDIVESLIGATFVQYGVDKAREV 161 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV- 193 VD + A + D KT L AH P Y+++ GP++ FT Sbjct: 162 VHHLVDDTLAEVATEGPAL--DWKTSLTVKAHEMGLPEPRYQMSV-GGPEYALEFTAFAM 218 Query: 194 -----EISGLAPAQGMDCSKRAAEQVAAAE 218 E+ G+ G SKR A Q+AAAE Sbjct: 219 LGDSKEVLGV----GNGSSKRKA-QLAAAE 243 >gi|212716732|ref|ZP_03324860.1| hypothetical protein BIFCAT_01669 [Bifidobacterium catenulatum DSM 16992] gi|212660436|gb|EEB21011.1| hypothetical protein BIFCAT_01669 [Bifidobacterium catenulatum DSM 16992] Length = 278 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 105/206 (50%), Gaps = 13/206 (6%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH ++YERLEFLGD +L L+ + L+ EG+L+ V Sbjct: 33 LLVEALTHRSFSHENPGAKNYERLEFLGDAVLELVSTETLYKAHPDMNEGQLAKMRAKAV 92 Query: 80 SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134 S E+ S++ARE L+ +I + + +SI D+VESLI A ++ GI+ V Sbjct: 93 SEESLSKIAREKLNAGPYILLGHGESDQGGADKSSILCDIVESLIGATFIQHGIDEARRV 152 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 VD+ + A + D KT L AH P Y+++ SGP++ FT V Sbjct: 153 VHHLVDETLAEVATEGPAL--DWKTSLTVKAHGMGFGEPRYQMSV-SGPEYAQVFTANVM 209 Query: 195 I--SGLAPAQGMDCSKRAAEQVAAAE 218 + S + G SKR A Q+AAAE Sbjct: 210 LGESDEIISTGTGTSKRKA-QLAAAE 234 >gi|120403163|ref|YP_952992.1| ribonuclease III [Mycobacterium vanbaalenii PYR-1] gi|119955981|gb|ABM12986.1| RNAse III [Mycobacterium vanbaalenii PYR-1] Length = 235 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 94/185 (50%), Gaps = 14/185 (7%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S S+ + ERLEFLGD +LGL I+ L++ EG+L+ S+V Sbjct: 20 LLTIALTHRSYSYENGGVPTNERLEFLGDSVLGLTITEELYHRHPDRSEGDLAKLRASIV 79 Query: 80 SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + + + V R L L +++ + + +SI AD VESL+ A+YL+ G EVA Sbjct: 80 NTQALADVGRNLTEHGLGAYLLLGKGEENSGGADKSSILADGVESLLGAIYLECGGEVAR 139 Query: 137 TFVDKYWKQ-----RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 + + + L +G D K+ LQE ++ P Y VT +GPDHD FT Sbjct: 140 EVILRLFSSLLDTAPTLGAG---LDWKSSLQELTASRGLGAPTYVVT-STGPDHDKEFTA 195 Query: 192 VVEIS 196 V + Sbjct: 196 AVMVG 200 >gi|307703518|ref|ZP_07640460.1| ribonuclease III [Streptococcus oralis ATCC 35037] gi|307622925|gb|EFO01920.1| ribonuclease III [Streptococcus oralis ATCC 35037] Length = 190 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 3/180 (1%) Query: 45 FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 FLGD +L LLIS L+ + EG+LS +V E+ + AR+ FI++ Sbjct: 6 FLGDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEE 65 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQ 162 K +I D E+ + AL LD + F+ + + +++G F +D KT LQ Sbjct: 66 KSGGRNRDTILGDAFEAFLGALLLDKDVARVKEFIYQVMIPK-VEAGDFEMIKDYKTHLQ 124 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E V Y+VT +GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 125 ELLQVNGDVDIRYQVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 184 >gi|225351172|ref|ZP_03742195.1| hypothetical protein BIFPSEUDO_02762 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158628|gb|EEG71870.1| hypothetical protein BIFPSEUDO_02762 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 275 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 105/206 (50%), Gaps = 13/206 (6%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH ++YERLEFLGD +L L+ + L+ EG+L+ V Sbjct: 33 LLVEALTHRSFSHENPGAKNYERLEFLGDAVLELVSTETLYKAHPDMNEGQLAKMRAKAV 92 Query: 80 SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134 S E+ S++ARE L+ +I + + +SI D+VESLI A ++ GI+ V Sbjct: 93 SEESLSKIAREKLNAGPYILLGHGESDQGGADKSSILCDIVESLIGATFIQHGIDEARRV 152 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 VD+ + A + D KT L AH P Y+++ SGP++ FT V Sbjct: 153 VHHLVDETLAEVATEGPAL--DWKTSLTVKAHGMGFGEPRYQMSV-SGPEYAQVFTANVM 209 Query: 195 I--SGLAPAQGMDCSKRAAEQVAAAE 218 + S + G SKR A Q+AAAE Sbjct: 210 LGESDEIISTGTGTSKRKA-QLAAAE 234 >gi|218131792|ref|ZP_03460596.1| hypothetical protein BACEGG_03413 [Bacteroides eggerthii DSM 20697] gi|217986095|gb|EEC52434.1| hypothetical protein BACEGG_03413 [Bacteroides eggerthii DSM 20697] Length = 301 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 113/225 (50%), Gaps = 13/225 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y K +G+ N ++AL H S S ++ + ERLEFLGD IL ++ +++ Sbjct: 32 YFCFYKILGFFPRNIRFYQQALLHKSTSVRSEKGRPLNNERLEFLGDAILDAIVGDIVYK 91 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF+ +EG L+ + +V ET +++A E+ L ++ S+ S + + + E+ Sbjct: 92 HFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAFEA 147 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178 LI A+YLD G E F+++ + + K R + K++L EW+ K + +++ Sbjct: 148 LIGAIYLDQGYERCKQFMEEKILKNYIDLDKMSRKEVNFKSKLIEWSQ-KNKMEVSFELI 206 Query: 179 FRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +S D++P F V I L G SK+ ++Q AA LK+ Sbjct: 207 EQSLDRDYNPMFHTEVLIENLPAGTGTGYSKKESQQNAAQMALKK 251 >gi|290508248|ref|ZP_06547619.1| ribonuclease III [Klebsiella sp. 1_1_55] gi|289777642|gb|EFD85639.1| ribonuclease III [Klebsiella sp. 1_1_55] Length = 176 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 3/172 (1%) Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +I+ L++ F EG++S +LV T +++ARE +L +R+ K S Sbjct: 1 MIANALYHRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRES 60 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171 I AD VE+LI ++LD I+ + +++ R + G ++D KT LQE+ + Sbjct: 61 ILADTVEALIGGVFLDSDIQNVERLILSWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 120 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 P Y V G HD FT+ ++SGL+ P G S+R AEQ AA + LK+ Sbjct: 121 LPSYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 172 >gi|24379904|ref|NP_721859.1| ribonuclease III [Streptococcus mutans UA159] gi|81451148|sp|Q8DT66|RNC_STRMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|24377882|gb|AAN59165.1|AE014983_6 putative ribonuclease III [Streptococcus mutans UA159] Length = 231 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 11/225 (4%) Query: 8 TLEKRIG----YAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 TLEK++ F+++ LLE A TH+S ++ ++ ERLEFLGD +L L IS L Sbjct: 3 TLEKKLAEDFKIVFSDKELLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLTISHYL 62 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F+ + EG+LS + +V E+ + +R +I++ K +I D+ Sbjct: 63 FDKYPQKAEGDLSKMRSMIVREESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDLF 122 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E+ + AL LD G++ F+++ + +++ + R D KT LQE V +Y+V Sbjct: 123 EAFLGALLLDAGLKAVEAFLNQVVIPK-VENNNYERVTDYKTALQELLQVDGDVLIDYEV 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGP H F V V ++ + G SK+ AEQ AA L++ Sbjct: 182 LKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALEK 226 >gi|33864214|ref|NP_895774.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9313] gi|33635798|emb|CAE22123.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9313] Length = 281 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 105/207 (50%), Gaps = 11/207 (5%) Query: 21 SLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 +++++ALTH+S QE ++ERLEFLGD +L L S + HF GE S L Sbjct: 52 AVIDEALTHTSA----QEIINHERLEFLGDAVLRLAASEYIDRHFPRMNVGERSALRAHL 107 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGT 137 VS ++V + + + S + + D S ++QA+ E+LI ALY +E Sbjct: 108 VSDRWLAEVGQRIGIESVLIIGPMAAGDA-SAKPTLQAEATEALIGALYECWQSLEPIHR 166 Query: 138 FVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVE 194 ++ +W++ A+ + R ++K+ LQEW+ A+ P Y+ RS DP R+ V Sbjct: 167 WLTPHWQEASSAVLTDPHRLNSKSALQEWSQARGLGLPRYECAERSKQHGDPQRYVCQVH 226 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + +G S+R AEQ AA L+ Sbjct: 227 LDDRPIGEGWGGSRRNAEQEAARRSLQ 253 >gi|255017842|ref|ZP_05289968.1| ribonuclease III [Listeria monocytogenes FSL F2-515] Length = 158 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 4/141 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F N LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSXYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDK 141 S I ALYLD GI+ TF+++ Sbjct: 123 SFIGALYLDNGIDKVVTFLER 143 >gi|325105464|ref|YP_004275118.1| ribonuclease III [Pedobacter saltans DSM 12145] gi|324974312|gb|ADY53296.1| ribonuclease III [Pedobacter saltans DSM 12145] Length = 242 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 103/228 (45%), Gaps = 17/228 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L IG+ N SL A H SI+ + S ERLEFLGD +LG +++ +LF + Sbjct: 21 LRNLIGFVPGNLSLYRMAFRHKSIALGIKKGVKNSNERLEFLGDAVLGAVVAEVLFKMYP 80 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +VS +Q+ ++L I ++ S +S+ D E+L+ Sbjct: 81 YKDEGFLTEMRSKIVSRANLNQLGKKLGFNKLIEFDPS-TVNISSKQSSLLGDAFEALVG 139 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSG-------KFRRDAKTELQEWAHAKFGVTPEYKV 177 A+YLD G F + R L + K+ L EW + ++ + Sbjct: 140 AVYLDKGY----NFTKDFLINRILNPHVDIHTLEVTETNFKSRLIEWCQ-RLSKEIQFNL 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 D D FT+ V I G A G+D +K+ AE++AA + + G+ Sbjct: 195 IPNQEGDSDKLFTIQVVIDGELMATGVDYNKKNAEKLAAEKTCEMLGV 242 >gi|87117418|gb|ABD19995.1| Rnc [Shigella flexneri] gi|87117421|gb|ABD19997.1| Rnc [Shigella flexneri] gi|87117427|gb|ABD20001.1| Rnc [Shigella flexneri] gi|87117430|gb|ABD20003.1| Rnc [Shigella dysenteriae] gi|87117433|gb|ABD20005.1| Rnc [Shigella flexneri] gi|87117436|gb|ABD20007.1| Rnc [Shigella flexneri] gi|87117439|gb|ABD20009.1| Rnc [Shigella flexneri] gi|87117442|gb|ABD20011.1| Rnc [Shigella boydii] gi|87117445|gb|ABD20013.1| Rnc [Shigella dysenteriae] gi|87117448|gb|ABD20015.1| Rnc [Shigella dysenteriae] gi|87117451|gb|ABD20017.1| Rnc [Shigella boydii] gi|87117454|gb|ABD20019.1| Rnc [Shigella boydii] gi|87117457|gb|ABD20021.1| Rnc [Shigella dysenteriae] gi|87117460|gb|ABD20023.1| Rnc [Shigella dysenteriae] gi|87117466|gb|ABD20027.1| Rnc [Shigella dysenteriae] gi|87117469|gb|ABD20029.1| Rnc [Shigella boydii] gi|87117472|gb|ABD20031.1| Rnc [Shigella boydii] gi|87117475|gb|ABD20033.1| Rnc [Shigella boydii] gi|87117478|gb|ABD20035.1| Rnc [Shigella dysenteriae] gi|87117481|gb|ABD20037.1| Rnc [Shigella flexneri] gi|87117484|gb|ABD20039.1| Rnc [Shigella dysenteriae] gi|87117487|gb|ABD20041.1| Rnc [Shigella boydii] gi|87117490|gb|ABD20043.1| Rnc [Shigella boydii] gi|87117493|gb|ABD20045.1| Rnc [Shigella boydii] gi|87117499|gb|ABD20049.1| Rnc [Shigella dysenteriae] gi|87117502|gb|ABD20051.1| Rnc [Shigella boydii] gi|87117505|gb|ABD20053.1| Rnc [Shigella dysenteriae] gi|87117508|gb|ABD20055.1| Rnc [Shigella boydii] gi|87117511|gb|ABD20057.1| Rnc [Shigella boydii] gi|87117517|gb|ABD20061.1| Rnc [Shigella boydii] gi|87117523|gb|ABD20065.1| Rnc [Shigella boydii] gi|87117526|gb|ABD20067.1| Rnc [Shigella flexneri] gi|87117529|gb|ABD20069.1| Rnc [Shigella flexneri] gi|87117532|gb|ABD20071.1| Rnc [Shigella boydii] gi|87117535|gb|ABD20073.1| Rnc [Escherichia coli] gi|87117538|gb|ABD20075.1| Rnc [Escherichia coli] gi|87117541|gb|ABD20077.1| Rnc [Escherichia coli] Length = 178 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 3/172 (1%) Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +I+ L++ F EG++S +LV T +++ARE +L +R+ K S Sbjct: 3 VIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRES 62 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171 I AD VE+LI ++LD I+ + +++ R + G ++D KT LQE+ + Sbjct: 63 ILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 122 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 P Y V G HD FT+ ++SGL+ P G S+R AEQ AA + LK+ Sbjct: 123 LPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 174 >gi|87117496|gb|ABD20047.1| Rnc [Shigella dysenteriae] Length = 178 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 3/172 (1%) Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +I+ L++ F EG++S +LV T +++ARE +L +R+ K S Sbjct: 3 VIANALYHRFPCVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRES 62 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171 I AD VE+LI ++LD I+ + +++ R + G ++D KT LQE+ + Sbjct: 63 ILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 122 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 P Y V G HD FT+ ++SGL+ P G S+R AEQ AA + LK+ Sbjct: 123 LPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 174 >gi|290580116|ref|YP_003484508.1| putative ribonuclease III [Streptococcus mutans NN2025] gi|254997015|dbj|BAH87616.1| putative ribonuclease III [Streptococcus mutans NN2025] Length = 231 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 11/225 (4%) Query: 8 TLEKRIG----YAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 TLEK++ F+++ LLE A TH+S ++ ++ ERLEFLGD +L L IS L Sbjct: 3 TLEKKLAEDFKIVFSDKELLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLTISRYL 62 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F+ + EG+LS + +V E+ + +R +I++ K +I D+ Sbjct: 63 FDKYPQKAEGDLSKMRSMIVREESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDLF 122 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E+ + AL LD G++ F+++ + +++ + R D KT LQE V +Y+V Sbjct: 123 EAFLGALLLDAGLKAVEAFLNQVVIPK-VENNNYERVTDYKTALQELLQVDGDVLIDYEV 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGP H F V V ++ + G SK+ AEQ AA L++ Sbjct: 182 LKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALEK 226 >gi|118462414|ref|YP_882955.1| ribonuclease III [Mycobacterium avium 104] gi|254776229|ref|ZP_05217745.1| ribonuclease III [Mycobacterium avium subsp. avium ATCC 25291] gi|118163701|gb|ABK64598.1| ribonuclease III [Mycobacterium avium 104] Length = 237 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 93/182 (51%), Gaps = 8/182 (4%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S + H + ERLEFLGD +LGL I+ L++ EG+L+ S+V Sbjct: 19 LLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDALYHRHPDRTEGDLAKLRASVV 78 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVAG 136 + + + VAR+L R + + +SI AD +ESL+ A+YL GI+ A Sbjct: 79 NTQALADVARKLCDGGLGAHLLLGRGEANTGGADKSSILADGMESLLGAIYLQHGIDTAR 138 Query: 137 TFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + + A + D KT LQE A+ P Y VT +GPDHD FT VV Sbjct: 139 EVILRLFGALLDAAPTLGAGLDWKTSLQELTAARGMGAPSYLVT-STGPDHDKEFTAVVV 197 Query: 195 IS 196 ++ Sbjct: 198 VA 199 >gi|270294929|ref|ZP_06201130.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317477924|ref|ZP_07937108.1| ribonuclease III [Bacteroides sp. 4_1_36] gi|270274176|gb|EFA20037.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316905940|gb|EFV27710.1| ribonuclease III [Bacteroides sp. 4_1_36] Length = 309 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 112/218 (51%), Gaps = 13/218 (5%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ + + ++AL H SIS ++ + ERLEFLGD IL ++ +++ HF+ +E Sbjct: 44 LGFFPRDIKVYQQALLHKSISMRSEKGRPINNERLEFLGDAILDAIVGDIVYRHFEGRRE 103 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V ET +++A E+ L ++ S+ S + + + E+ I A+YL Sbjct: 104 GFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAFEAFIGAIYL 159 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184 D G + F+++ + + K R + K++L EW+ K V+ E F + Sbjct: 160 DQGYDRCKQFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQKNKMEVSFELIEQFLD-EE 218 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 ++P F V I G++ G SK+ ++Q AA LK+ Sbjct: 219 YNPMFHTEVRIEGISAGTGTGYSKKESQQNAAQMALKK 256 >gi|293363981|ref|ZP_06610717.1| ribonuclease III [Mycoplasma alligatoris A21JP2] gi|292552471|gb|EFF41245.1| ribonuclease III [Mycoplasma alligatoris A21JP2] Length = 226 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 33/223 (14%) Query: 19 NRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 N+ + +AL H S S ESYERLEFLGD +L L +S+ ++ F + ++G+++ Sbjct: 20 NKLIYFQALKHGSFVKKQSKLESYERLEFLGDSVLQLFVSSYIYTKFPNMEQGKMTELRA 79 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +V+A + SQV+ ++ L + ++ T +Q+D+ ES+I A+++D G+ A Sbjct: 80 KVVNANSLSQVSNKIGLINLLKTGGGQTAVSVKSSTKVQSDIFESIIGAIFVDLGLNHAY 139 Query: 137 TF--------VDKYWKQRALKSGKFRRDAKTELQEW------AHAKFGVTPEYKVTFRSG 182 F +D +K +D KT LQE+ + K+ V +F + Sbjct: 140 KFIRLHLSSTIDNLFKHE-------NKDPKTRLQEYFQNISRENIKYIVDQLPNKSFSAK 192 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 HD +V I G SK+ +E AA E LK+ I Sbjct: 193 ATHDK---IVYGI-------GKGSSKKESEINAALEALKKLNI 225 >gi|41409093|ref|NP_961929.1| ribonuclease III [Mycobacterium avium subsp. paratuberculosis K-10] gi|81413486|sp|Q73VL8|RNC_MYCPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|41397452|gb|AAS05312.1| Rnc [Mycobacterium avium subsp. paratuberculosis K-10] Length = 237 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 93/182 (51%), Gaps = 8/182 (4%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S + H + ERLEFLGD +LGL I+ L++ EG+L+ S+V Sbjct: 19 LLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDALYHRHPDRTEGDLAKLRASVV 78 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVAG 136 + + + VAR+L R + + +SI AD +ESL+ A+YL GI+ A Sbjct: 79 NTQALADVARKLCDGGLGAHLLLGRGEANTGGADKSSILADGMESLLGAIYLQHGIDTAR 138 Query: 137 TFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + + A + D KT LQE A+ P Y VT +GPDHD FT VV Sbjct: 139 EVILRLFGALLDAAPTLGAGLDWKTSLQELTAARGMGAPSYLVT-STGPDHDKEFTAVVV 197 Query: 195 IS 196 ++ Sbjct: 198 VA 199 >gi|160888577|ref|ZP_02069580.1| hypothetical protein BACUNI_00994 [Bacteroides uniformis ATCC 8492] gi|156861891|gb|EDO55322.1| hypothetical protein BACUNI_00994 [Bacteroides uniformis ATCC 8492] Length = 306 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 112/218 (51%), Gaps = 13/218 (5%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ + + ++AL H SIS ++ + ERLEFLGD IL ++ +++ HF+ +E Sbjct: 41 LGFFPRDIKVYQQALLHKSISMRSEKGRPINNERLEFLGDAILDAIVGDIVYRHFEGRRE 100 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V ET +++A E+ L ++ S+ S + + + E+ I A+YL Sbjct: 101 GFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAFEAFIGAIYL 156 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184 D G + F+++ + + K R + K++L EW+ K V+ E F + Sbjct: 157 DQGYDRCKQFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQKNKMEVSFELIEQFLD-EE 215 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 ++P F V I G++ G SK+ ++Q AA LK+ Sbjct: 216 YNPMFHTEVRIEGISAGTGTGYSKKESQQNAAQMALKK 253 >gi|295396031|ref|ZP_06806215.1| ribonuclease III [Brevibacterium mcbrellneri ATCC 49030] gi|294971119|gb|EFG47010.1| ribonuclease III [Brevibacterium mcbrellneri ATCC 49030] Length = 230 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 106/221 (47%), Gaps = 8/221 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S L KR+G + L +LTH S + + + ERLEFLGD +L L + LF+H Sbjct: 2 SELNKRLGVDI-DPETLRLSLTHRSYAFENGGIPTNERLEFLGDAVLQLKTTKWLFDHNT 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EG L+ +++V++ + VAR + F+ + + + SI AD VE++I Sbjct: 61 EASEGRLAKMRSAVVNSRALAGVARTYGIGEFLLLGNGEERTGGRDKDSILADTVEAIIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A Y+ G + A V++ + A+ G D KT LQE A Y VT Sbjct: 121 ACYVSQGPDAANALVERLVGPLLEDAVNLGA-GMDYKTTLQEAAADLSLGAVHYDVTGE- 178 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH FT V + A G SK+ AE VAA +K+ Sbjct: 179 GPDHARVFTAVAYLGETRWASGEGTSKKNAELVAAEIAVKK 219 >gi|328777204|ref|XP_394444.3| PREDICTED: ribonuclease 3 [Apis mellifera] Length = 1290 Score = 81.6 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T SI ++ S +RLEFLGD +L L++S L+ + Sbjct: 1010 KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKY 1069 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ +T + V +L + + + T +AD++E+ Sbjct: 1070 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGN----PKAELKTKDRADLLEAF 1125 Query: 123 IAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPE 174 + ALY+D G+E F D + + + + D K++LQ+ + P Sbjct: 1126 LGALYVDKGLEYCRVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1185 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV GP + +TV V G A+ S + AE +A E L++ Sbjct: 1186 YKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEK 1233 Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 41/110 (37%), Positives = 66/110 (60%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T SSI+H+ ERLEFLGD ++ L S LF+ F +EG L+ ++V + + + Sbjct: 861 TESSIAHN-----ERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVL 915 Query: 88 ARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L ++ + SDL D+ + A+ E+L+ +L+LDGGIEVA Sbjct: 916 AKKLNLEEYMLYAHGSDLCHDL--ELRHAMANCFEALMGSLFLDGGIEVA 963 >gi|116071631|ref|ZP_01468899.1| Ribonuclease III [Synechococcus sp. BL107] gi|116065254|gb|EAU71012.1| Ribonuclease III [Synechococcus sp. BL107] Length = 251 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 8/206 (3%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +L+++ALTH IS +++ERLEFLGD +L L + + +H+ + G S LVS Sbjct: 28 NLVDEALTH--ISAGRGKNFERLEFLGDAVLRLAATEFIDHHYPNLPVGSCSSLRAQLVS 85 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY--LDGGIEVAGTF 138 +Q+ +L L SF+ + D + T + AD E+LI A+Y D +E + Sbjct: 86 DRWLTQLGEKLQLESFLVIGPKALGDEAARAT-LHADATEALIGAIYSGSDNNLEPIHQW 144 Query: 139 VDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEI 195 + W+Q + + K+ LQEW+ A+ P Y T +S DP RF V++ Sbjct: 145 LTPQWQQTTADVFATPHLFNGKSILQEWSQAEGLGLPNYITTEQSCRHGDPERFKSHVQV 204 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLK 221 A G S++ AEQ AA+ ++ Sbjct: 205 GTRLGADGFGRSRKYAEQNAASNAVQ 230 >gi|86605510|ref|YP_474273.1| ribonuclease III [Synechococcus sp. JA-3-3Ab] gi|86554052|gb|ABC99010.1| ribonuclease III [Synechococcus sp. JA-3-3Ab] Length = 241 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 10/193 (5%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL++AL H S+ Q + +RLEFLGD +L +L + LF + GEL+ + L+S Sbjct: 34 LLDQALIHPSLDG--QRNNDRLEFLGDSVLRILATEFLFQSYPHLSVGELTAVRSDLISD 91 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG---TF 138 +++A L ++ V S + D+ + AD E+++ +LYL G+ + Sbjct: 92 AHLAELADLHGLERYLEVGSSSQNDLAGRERRL-ADAFEAVLGSLYLSWGMHTLARLHPW 150 Query: 139 VDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 +D Y++QR + RR+ K LQE +G PEY++ + +H P FT+ V Sbjct: 151 LDPYFRQRVEQWFQDPTRRNPKAALQELTQRLWGTLPEYRLV--AAREHPPHFTMEVWGH 208 Query: 197 GLAPAQGMDCSKR 209 G +G SK+ Sbjct: 209 GQCWGRGEGRSKK 221 >gi|329954117|ref|ZP_08295212.1| ribonuclease III [Bacteroides clarus YIT 12056] gi|328528094|gb|EGF55074.1| ribonuclease III [Bacteroides clarus YIT 12056] Length = 327 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 13/207 (6%) Query: 24 EKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 ++AL H S S ++ + ERLEFLGD IL ++ +++ HF+ +EG L+ + +V Sbjct: 50 QQALLHKSTSVRSEKGRPLNNERLEFLGDAILDAIVGDIVYKHFEGRREGFLTNTRSKIV 109 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 ET +++A E+ L ++ S+ S + + + E+ I A+YLD G E F+ Sbjct: 110 QRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAFEAFIGAIYLDQGYERCKQFM 165 Query: 140 DKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 +K + + K R + K++L EW+ K V+ E F D++P F V I Sbjct: 166 EKKILKNYIDLDKMSRKEVNFKSKLIEWSQKNKMEVSFELIEQFLDR-DYNPMFHTEVRI 224 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 L+ G SK+ ++Q AA LK+ Sbjct: 225 ESLSAGTGTGYSKKESQQNAAQMALKK 251 >gi|171741390|ref|ZP_02917197.1| hypothetical protein BIFDEN_00473 [Bifidobacterium dentium ATCC 27678] gi|171277004|gb|EDT44665.1| hypothetical protein BIFDEN_00473 [Bifidobacterium dentium ATCC 27678] Length = 229 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 106/206 (51%), Gaps = 13/206 (6%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH + ++YERLEFLGD +L L+ + L+ EG+L+ V Sbjct: 18 LLVEALTHRSFSHEHPGAKNYERLEFLGDAVLELVSTETLYAAHPDMTEGQLAKMRAKAV 77 Query: 80 SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134 S E+ S +ARE L + +I + + + + +SI D+VESLI A ++ GI+ V Sbjct: 78 SEESLSHIAREKLHVGPYILLGNGEAEQHGAEKSSILCDIVESLIGATFIQHGIDEARKV 137 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VV 192 VD + A + D KT L AH P Y+++ SGP++ FT + Sbjct: 138 VHHLVDDTLAEVATEGPAL--DWKTSLTVKAHDMGLGEPYYRMSV-SGPEYAQVFTAKAM 194 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAE 218 +E S G SKR A Q+AAAE Sbjct: 195 LEGSDEVIGIGKGSSKRKA-QLAAAE 219 >gi|157952932|ref|YP_001497824.1| hypothetical protein NY2A_B628R [Paramecium bursaria Chlorella virus NY2A] gi|155123159|gb|ABT15027.1| hypothetical protein NY2A_B628R [Paramecium bursaria Chlorella virus NY2A] Length = 268 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 105/234 (44%), Gaps = 31/234 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +E IG + + A ++++I + +YER+EF+GD +LG +I+ L+++F Sbjct: 45 NDIEYLIGMPIIDFEYYKTAFSYNAIVEG-ESTYERMEFVGDSVLGFIIARYLYDNFPGK 103 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG LS VS + S +A + L +F+ + + I DV E+L+ A+ Sbjct: 104 DEGFLSRLRTKFVSGKFLSSIALRMGLHNFVIMHQKGLYRGWNTNPRILEDVFEALMGAI 163 Query: 127 YLDGGIEVAGTF---------------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 Y D GI A F +D +K R LK + K ELQ Sbjct: 164 YFDLGINAAKQFFMSTLVKYADIHNLMIDTNYKDRLLKHTR-----KIELQR-------- 210 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PE+ F G +P F V V I+G + G S++ AEQ A+ L GI Sbjct: 211 -PEFVSVFEKG-GANPSFVVDVVINGQKISTGTGKSRKDAEQNASKLALYSMGI 262 >gi|157953758|ref|YP_001498649.1| hypothetical protein AR158_C568R [Paramecium bursaria Chlorella virus AR158] gi|156068406|gb|ABU44113.1| hypothetical protein AR158_C568R [Paramecium bursaria Chlorella virus AR158] Length = 268 Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 105/234 (44%), Gaps = 31/234 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +E IG + + A ++++I + +YER+EF+GD +LG +I+ L+++F Sbjct: 45 NDIEYLIGMPIIDFEYYKTAFSYNAIVEG-ESTYERMEFVGDSVLGFIIARYLYDNFPGK 103 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG LS VS + S +A + L +F+ + + I DV E+L+ A+ Sbjct: 104 DEGFLSRLRTKFVSGKFLSSIALRMGLHNFVIMHQKGLYRGWNTNPRILEDVFEALMGAI 163 Query: 127 YLDGGIEVAGTF---------------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 Y D GI A F +D +K R LK + K ELQ Sbjct: 164 YFDLGINAAKQFFMSTLVKYADIHNLMIDTNYKDRLLKHTR-----KIELQR-------- 210 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PE+ F G +P F V V I+G + G S++ AEQ A+ L GI Sbjct: 211 -PEFVSVFEKG-GANPSFVVDVVINGQKISTGTGKSRKDAEQNASKLALYSMGI 262 >gi|221126960|ref|XP_002167020.1| PREDICTED: similar to ribonuclease III, nuclear [Hydra magnipapillata] Length = 576 Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 110/222 (49%), Gaps = 25/222 (11%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHS-------SISHSYQESYERLEFLGDRILGL 53 ++ ++ TLEK+IG F + SLL KALTHS +I+ +YE+LEFLGD IL Sbjct: 350 LTLQKFVTLEKKIGVEFTHISLLVKALTHSVKGLDDETITRG---NYEQLEFLGDAILKY 406 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 + S L+ HF + +EG L++ SL++ + ++ + E+DL +I + + T Sbjct: 407 ICSDYLYKHFPNHQEGHLTLLRISLINLKCLAKASEEIDLIKYIVFHPNHEPSTTNEKTF 466 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD---AKTELQEWAHAKFG 170 +DV E+ +AAL+LD G+ ++ R LK +D K++LQ+ + + Sbjct: 467 --SDVFEAFLAALHLDKGLLHCQKLIEVCILSR-LKEFILSQDWLEPKSQLQQCCNTYYN 523 Query: 171 VT-------PEYKVTFRSGPDHDPRFTVVVEISG--LAPAQG 203 T P YK S + F V V +G L QG Sbjct: 524 KTKPDKVEHPVYKRIKLSTINGVQNFKVGVYFNGKRLGTGQG 565 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S LF F G+LS+ + LV E +A +L+L F+ V R V + Sbjct: 230 SMHLFLMFPEKGPGKLSIFRSGLVQGEHLRTIANKLNLVDFLLVKH--RSQVLQNLGYFL 287 Query: 116 ADVVESLIAALYLDGGIEVAGTFV 139 + VE++I A+YLD G+E A + + Sbjct: 288 GNAVEAVIGAVYLDAGLEKADSLI 311 >gi|68536283|ref|YP_250988.1| ribonuclease III [Corynebacterium jeikeium K411] gi|90101621|sp|Q4JUY7|RNC_CORJK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|68263882|emb|CAI37370.1| ribonuclease III [Corynebacterium jeikeium K411] Length = 244 Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 22 LLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S ++ + + ERLEFLGD +LGL ++ L+ F E ++S + +V Sbjct: 37 LLRLALTHRSFANENGHLPNNERLEFLGDAVLGLAVAEQLYRQFPERAESDISKMRSGVV 96 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 + + VAR L + +I + SI AD VES++ A+YL G EVA V Sbjct: 97 NMYALADVARRLGMGDYILLGRGEMLTGGKDKHSILADSVESMLGAIYLHHGFEVARATV 156 Query: 140 DKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + + ++ ++ D KT L E P Y+V GP+HD F V I Sbjct: 157 LRLFAEKITEAPTTGLTMDWKTVLLEKLSDMKLPLPTYEVR-GEGPEHDKTFYATVTIED 215 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKR 222 L G +K+ AE AA + +++ Sbjct: 216 LV-THGEGHTKKVAEHAAAKQAVQK 239 >gi|73953910|ref|XP_868231.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 3 [Canis familiaris] Length = 1282 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 7/164 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1103 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1162 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1163 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1221 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQE 163 IAALY+D +E TF++ + R LK + D K++LQ+ Sbjct: 1222 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQ 1264 Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 949 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1003 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 1004 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1051 >gi|323343670|ref|ZP_08083897.1| ribonuclease 3 [Prevotella oralis ATCC 33269] gi|323095489|gb|EFZ38063.1| ribonuclease 3 [Prevotella oralis ATCC 33269] Length = 361 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 116/225 (51%), Gaps = 13/225 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 YS+L + IG+ N S + AL H SI S + ERLEFLGD IL ++ ++++ Sbjct: 22 YSSLYRIIGFYPRNISYYKLALMHKSIMRRNSKGKPVNNERLEFLGDAILDAIVGHIVYD 81 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV +T +++A+E+ + I +S+ S+M + E+ Sbjct: 82 HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGINRLI-LSNGRSSSHNSYMG---GNAFEA 137 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKV- 177 L+ A+YLD G + F++K + + K + K++L EW+ K V E+K+ Sbjct: 138 LVGAIYLDRGYDACMRFMNKRILAQMINIDKVAYKEVNFKSKLIEWSQ-KNRVRMEFKML 196 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + P F +V + G+ G SK+ ++Q+A+ L+R Sbjct: 197 DQKKDKNGSPMFQYMVCLEGVDGCSGTGYSKKESQQLASKLTLER 241 >gi|332885395|gb|EGK05644.1| hypothetical protein HMPREF9456_02446 [Dysgonomonas mossii DSM 22836] Length = 290 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 112/225 (49%), Gaps = 13/225 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y + K G+ N +L E+AL H S S ++ + ERLEFLGD IL +++ ++F Sbjct: 20 YVSFYKIFGFYPYNITLYEQALLHKSSSIKLKDGKWINNERLEFLGDAILDAIVADIVFK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F+ KEG L+ + +V ET +++A EL + I+ S+ R + T + + +E+ Sbjct: 80 EFEYKKEGFLTNMRSKIVQRETLNKLALELGIDKLIKTSA--RNTTPN--THMYGNALEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHA-KFGVTPEYKV 177 LI A+YLD G V+ FV + + L + + K+ L EW+ K V+ + Sbjct: 136 LIGAIYLDQGYRVSKKFVLERLIKEHLNIDTVAEQEANYKSRLIEWSQKQKISVSFDLVD 195 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +F ++ P F V I G G SK+ ++Q AA E + Sbjct: 196 SF-VDENNTPIFKTAVVILGEQAGLGTGYSKKESQQKAAKEAFNK 239 >gi|283455260|ref|YP_003359824.1| ribonuclease III [Bifidobacterium dentium Bd1] gi|283101894|gb|ADB09000.1| rncS Ribonuclease III [Bifidobacterium dentium Bd1] Length = 294 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 106/206 (51%), Gaps = 13/206 (6%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH + ++YERLEFLGD +L L+ + L+ EG+L+ V Sbjct: 83 LLVEALTHRSFSHEHPGAKNYERLEFLGDAVLELVSTETLYAAHPDMTEGQLAKMRAKAV 142 Query: 80 SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134 S E+ S +ARE L + +I + + + + +SI D+VESLI A ++ GI+ V Sbjct: 143 SEESLSHIAREKLHVGPYILLGNGEAEQHGAEKSSILCDIVESLIGATFIQHGIDEARKV 202 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VV 192 VD + A + D KT L AH P Y+++ SGP++ FT + Sbjct: 203 VHHLVDDTLAEVATEGPAL--DWKTSLTVKAHDMGLGEPYYRMSV-SGPEYAQVFTAKAM 259 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAE 218 +E S G SKR A Q+AAAE Sbjct: 260 LEGSDEVIGIGKGSSKRKA-QLAAAE 284 >gi|306823678|ref|ZP_07457053.1| ribonuclease III [Bifidobacterium dentium ATCC 27679] gi|309802879|ref|ZP_07696980.1| ribonuclease III [Bifidobacterium dentium JCVIHMP022] gi|304553385|gb|EFM41297.1| ribonuclease III [Bifidobacterium dentium ATCC 27679] gi|308220346|gb|EFO76657.1| ribonuclease III [Bifidobacterium dentium JCVIHMP022] Length = 294 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 106/206 (51%), Gaps = 13/206 (6%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH + ++YERLEFLGD +L L+ + L+ EG+L+ V Sbjct: 83 LLVEALTHRSFSHEHPGAKNYERLEFLGDAVLELVSTETLYAAHPDMTEGQLAKMRAKAV 142 Query: 80 SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134 S E+ S +ARE L + +I + + + + +SI D+VESLI A ++ GI+ V Sbjct: 143 SEESLSHIAREKLHVGPYILLGNGEAEQHGAEKSSILCDIVESLIGATFIQHGIDEARKV 202 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VV 192 VD + A + D KT L AH P Y+++ SGP++ FT + Sbjct: 203 VHHLVDDTLAEVATEGPAL--DWKTSLTVKAHDMGLGEPYYRMSV-SGPEYAQVFTAKAM 259 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAE 218 +E S G SKR A Q+AAAE Sbjct: 260 LEGSDEVIGIGKGSSKRKA-QLAAAE 284 >gi|87117514|gb|ABD20059.1| Rnc [Shigella boydii] Length = 178 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 3/172 (1%) Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +I+ L++ F EG++S +LV T +++ARE +L +R+ K S Sbjct: 3 VIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRES 62 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171 I AD VE+LI ++LD I + +++ R + G ++D KT LQE+ + Sbjct: 63 ILADTVEALIGGVFLDSDIRTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 122 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 P Y V G HD FT+ ++SGL+ P G S+R AEQ AA + LK+ Sbjct: 123 LPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 174 >gi|124024288|ref|YP_001018595.1| ribonuclease III [Prochlorococcus marinus str. MIT 9303] gi|123964574|gb|ABM79330.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9303] Length = 262 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 104/207 (50%), Gaps = 11/207 (5%) Query: 21 SLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 ++L++ALTH+S QE ++ERLEFLGD +L L S + HF GE S L Sbjct: 52 AILDEALTHTSA----QEIINHERLEFLGDAVLRLAASEYIDRHFPRMDVGERSALRAHL 107 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGT 137 VS ++V + + + + + + D S ++QA+ E+LI ALY +E Sbjct: 108 VSDRWLAEVGQRIGIEAVLIIGPMAAGDA-SAKPTLQAEATEALIGALYECWQSLEPIHH 166 Query: 138 FVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVE 194 ++ +W + A+ + R ++K+ LQEW+ A+ P Y+ RS DP R+ V Sbjct: 167 WLTPHWHEASSAVLADPHRLNSKSALQEWSQARGLGLPRYECAERSKQHGDPQRYLCQVH 226 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + +G S+R AEQ AA L+ Sbjct: 227 LDNRPIGEGWGGSRRNAEQEAARHSLE 253 >gi|332830459|gb|EGK03087.1| hypothetical protein HMPREF9455_01337 [Dysgonomonas gadei ATCC BAA-286] Length = 273 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 13/225 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y + K +G+ N +L E+AL H S S ++ + ERLEFLGD IL +++ ++F Sbjct: 20 YVSFCKILGFYPYNITLYEQALLHKSSSIKLKDGRWINNERLEFLGDAILDAIVADIVFK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F+ KEG L+ + +V ET +++A E+ + I+ S+ R + T + + +E+ Sbjct: 80 EFEYKKEGFLTNMRSKIVQRETLNRLALEIGIDKLIKTST--RNTTPN--THMYGNALEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHA-KFGVTPEYKV 177 I A+YLD G A FV + Q L + + K+ L EW+ K V+ + Sbjct: 136 FIGAIYLDQGYRAAKRFVFERLIQEHLNIESVAELEANYKSRLIEWSQKQKISVSFDLID 195 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +F ++ P F V I G G SK+ ++Q AA E + Sbjct: 196 SF-VDENNTPIFKTAVIIMGEQAGLGTGYSKKESQQKAAKEAYNK 239 >gi|330723844|gb|AEC46214.1| Ribonuclease III [Mycoplasma hyorhinis MCLD] Length = 225 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 5/148 (3%) Query: 19 NRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 N SL E+A TH S H + YE LEFLGD +L L S +F + D+ EG ++ + Sbjct: 17 NLSLYEQAFTHKSYHHVRPNKPHYEMLEFLGDSLLNLQTSLYIFKNIDAKNEGNATILRS 76 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +VS+ + ++++ +L L+ +++V+ + + + T I+AD++ESL AA+YLD + Sbjct: 77 QIVSSVSFAKISDKLQLSKYLKVAKGSEEILNN--TKIKADILESLTAAIYLDQDKKTFE 134 Query: 137 TFVDKYWKQRALK-SGKFRRDAKTELQE 163 FV K K S K +D K+E QE Sbjct: 135 DFVKKILHSLVKKQSKKVIKDPKSEFQE 162 >gi|315606951|ref|ZP_07881957.1| ribonuclease III [Prevotella buccae ATCC 33574] gi|315251332|gb|EFU31315.1| ribonuclease III [Prevotella buccae ATCC 33574] Length = 371 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 18/230 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y++L IG+ + L E+AL H S+ + + ERLEFLGD IL ++ ++F Sbjct: 20 YTSLYDIIGFYPRDIRLYEQALMHKSVMRRNAKGRPVNNERLEFLGDAILDAIVGDIVFK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV +T +++A+E+ ++ I + S + + + E+ Sbjct: 80 HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGISQLILSNG----HNSSHNSYLGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ ALYLD G + F+ K + + K + K++L EW K V ++K+ Sbjct: 136 LVGALYLDRGYDACMKFMQKRILSQMINIDKVAYKEVNFKSKLIEWGQ-KNRVKLDFKL- 193 Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223 G D D P F I G G SK+ ++Q A+ E LKRE Sbjct: 194 LSQGKDKDGNPMFAYQAVIEGCEGGTGKGYSKKESQQTASKLTLEKLKRE 243 >gi|313763647|gb|EFS35011.1| ribonuclease III [Propionibacterium acnes HL013PA1] gi|313773586|gb|EFS39552.1| ribonuclease III [Propionibacterium acnes HL074PA1] gi|313794040|gb|EFS42064.1| ribonuclease III [Propionibacterium acnes HL110PA1] gi|313801428|gb|EFS42679.1| ribonuclease III [Propionibacterium acnes HL110PA2] gi|313811637|gb|EFS49351.1| ribonuclease III [Propionibacterium acnes HL083PA1] gi|313813554|gb|EFS51268.1| ribonuclease III [Propionibacterium acnes HL025PA1] gi|313816825|gb|EFS54539.1| ribonuclease III [Propionibacterium acnes HL059PA1] gi|313829556|gb|EFS67270.1| ribonuclease III [Propionibacterium acnes HL063PA2] gi|313831378|gb|EFS69092.1| ribonuclease III [Propionibacterium acnes HL007PA1] gi|313834990|gb|EFS72704.1| ribonuclease III [Propionibacterium acnes HL056PA1] gi|313839852|gb|EFS77566.1| ribonuclease III [Propionibacterium acnes HL086PA1] gi|314914649|gb|EFS78480.1| ribonuclease III [Propionibacterium acnes HL005PA4] gi|314919238|gb|EFS83069.1| ribonuclease III [Propionibacterium acnes HL050PA1] gi|314920852|gb|EFS84683.1| ribonuclease III [Propionibacterium acnes HL050PA3] gi|314930530|gb|EFS94361.1| ribonuclease III [Propionibacterium acnes HL067PA1] gi|314957411|gb|EFT01514.1| ribonuclease III [Propionibacterium acnes HL002PA1] gi|314963605|gb|EFT07705.1| ribonuclease III [Propionibacterium acnes HL082PA1] gi|314968563|gb|EFT12661.1| ribonuclease III [Propionibacterium acnes HL037PA1] gi|314974253|gb|EFT18349.1| ribonuclease III [Propionibacterium acnes HL053PA1] gi|314976742|gb|EFT20837.1| ribonuclease III [Propionibacterium acnes HL045PA1] gi|314984443|gb|EFT28535.1| ribonuclease III [Propionibacterium acnes HL005PA1] gi|315079459|gb|EFT51452.1| ribonuclease III [Propionibacterium acnes HL053PA2] gi|315081314|gb|EFT53290.1| ribonuclease III [Propionibacterium acnes HL078PA1] gi|315095393|gb|EFT67369.1| ribonuclease III [Propionibacterium acnes HL038PA1] gi|315099274|gb|EFT71250.1| ribonuclease III [Propionibacterium acnes HL059PA2] gi|315100492|gb|EFT72468.1| ribonuclease III [Propionibacterium acnes HL046PA1] gi|315109074|gb|EFT81050.1| ribonuclease III [Propionibacterium acnes HL030PA2] gi|327328345|gb|EGE70107.1| ribonuclease III [Propionibacterium acnes HL096PA2] gi|327334306|gb|EGE76020.1| ribonuclease III [Propionibacterium acnes HL097PA1] gi|327444129|gb|EGE90783.1| ribonuclease III [Propionibacterium acnes HL043PA2] gi|327444991|gb|EGE91645.1| ribonuclease III [Propionibacterium acnes HL043PA1] gi|327451940|gb|EGE98594.1| ribonuclease III [Propionibacterium acnes HL092PA1] gi|327455025|gb|EGF01680.1| ribonuclease III [Propionibacterium acnes HL087PA3] gi|327457687|gb|EGF04342.1| ribonuclease III [Propionibacterium acnes HL083PA2] gi|328755143|gb|EGF68759.1| ribonuclease III [Propionibacterium acnes HL087PA1] gi|328758079|gb|EGF71695.1| ribonuclease III [Propionibacterium acnes HL025PA2] gi|328760097|gb|EGF73676.1| ribonuclease III [Propionibacterium acnes HL099PA1] Length = 265 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALTH S + + + ERLEFLGD IL + ++ L+ F EG+L+ +++V Sbjct: 53 LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 112 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + Q+AR+L + I++ + TSI AD E+L+ A+ L G+ V Sbjct: 113 STVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPDVLRLV 172 Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + A +SG D KT LQE+ P Y++ SGPDH+ R+ + Sbjct: 173 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 230 Query: 197 GLAPAQGMDCSKRAAEQVAA 216 G A +K+ AEQ AA Sbjct: 231 GRLHAAYTGHNKKEAEQGAA 250 >gi|332706107|ref|ZP_08426179.1| RNAse III [Lyngbya majuscula 3L] gi|332355199|gb|EGJ34667.1| RNAse III [Lyngbya majuscula 3L] Length = 237 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 92/163 (56%), Gaps = 6/163 (3%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N SLL+ ALTH SIS +++YE+LEF+GD ++ L S L+ ++ ++ GE + + L Sbjct: 28 NWSLLDLALTHCSIS--AEDNYEQLEFVGDAVIRLASSEWLWENYPNSSVGEFAAIRSVL 85 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGT 137 VS SQ+AR L ++ VS+ D TS AD E+++ ALYL +E+ Sbjct: 86 VSDRILSQLARSYGLERYLLVSNSAAGDKVG-ETSRLADAFEAILGALYLSTHTLELVRP 144 Query: 138 FVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++D + ++ ++ R++ K LQEW A + + P+Y +T Sbjct: 145 WLDPHLQKLTTEIRQDPARQNYKDALQEWTQAHYKLLPKYHLT 187 >gi|257055001|ref|YP_003132833.1| RNAse III [Saccharomonospora viridis DSM 43017] gi|256584873|gb|ACU96006.1| RNAse III [Saccharomonospora viridis DSM 43017] Length = 250 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/185 (36%), Positives = 95/185 (51%), Gaps = 12/185 (6%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S ++ ERLEFLGD +LGL+++ L+ EG+L+ S+V Sbjct: 28 LLTLALTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLYRQHPDLPEGQLAKLRASVV 87 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVAG 136 + + VAR L + + + SI AD +E++I A+YL+ GIE A Sbjct: 88 NMHALAGVARSLGEGGLGAHLLLGKGEELTGGRDKASILADGLEAVIGAVYLEHGIETAR 147 Query: 137 TFVDKYWKQRALKSGKFRR---DAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 + V + + R L R D KT LQE A A GV PEYKV +GPDH F+ V Sbjct: 148 SLVHRLFG-RLLAEAPRRGAGLDWKTSLQELTASAGLGV-PEYKV-VDTGPDHRKEFSAV 204 Query: 193 VEISG 197 V ++G Sbjct: 205 VLVNG 209 >gi|332299505|ref|YP_004441426.1| Ribonuclease 3 [Porphyromonas asaccharolytica DSM 20707] gi|332176568|gb|AEE12258.1| Ribonuclease 3 [Porphyromonas asaccharolytica DSM 20707] Length = 259 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 105/224 (46%), Gaps = 16/224 (7%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 +TL RIG L A+ H S S +E + ERLEFLGD +L I T L+ Sbjct: 29 TTLFDRIGIVPVRTDLYLLAMRHRSCSIVGEEGEKLNNERLEFLGDAVLEASICTYLYQL 88 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFMTSIQADVVES 121 + EGELS +SLVS ++V R L L + I V S L V I + VE+ Sbjct: 89 HPTWDEGELSKCKSSLVSRPVNNEVGRRLHLERYIIMVPSALDNSV-----DIYGNTVEA 143 Query: 122 LIAALYLDGGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 LI A+YLD G FV + ++ + ++ K+EL EW K ++ E+++ Sbjct: 144 LIGAIYLDQGYARTQEFVRDFILPTYRDMQAHTVASIQNYKSELIEWVQ-KHHLSHEFRL 202 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 HD F V I G +G SK+ A+Q AA + LK Sbjct: 203 EEHEMAPHD-HFIYSVWIDGKPVGRGAGSSKKRAQQEAARDTLK 245 >gi|289426387|ref|ZP_06428130.1| ribonuclease III [Propionibacterium acnes SK187] gi|289428762|ref|ZP_06430445.1| ribonuclease III [Propionibacterium acnes J165] gi|295130991|ref|YP_003581654.1| ribonuclease III [Propionibacterium acnes SK137] gi|289153115|gb|EFD01833.1| ribonuclease III [Propionibacterium acnes SK187] gi|289158160|gb|EFD06380.1| ribonuclease III [Propionibacterium acnes J165] gi|291376694|gb|ADE00549.1| ribonuclease III [Propionibacterium acnes SK137] gi|332675870|gb|AEE72686.1| ribonuclease III [Propionibacterium acnes 266] Length = 246 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALTH S + + + ERLEFLGD IL + ++ L+ F EG+L+ +++V Sbjct: 34 LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 93 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + Q+AR+L + I++ + TSI AD E+L+ A+ L G+ V Sbjct: 94 STVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPDVLRLV 153 Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + A +SG D KT LQE+ P Y++ SGPDH+ R+ + Sbjct: 154 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 211 Query: 197 GLAPAQGMDCSKRAAEQVAA 216 G A +K+ AEQ AA Sbjct: 212 GRLHAAYTGHNKKEAEQGAA 231 >gi|313819677|gb|EFS57391.1| ribonuclease III [Propionibacterium acnes HL046PA2] gi|313822217|gb|EFS59931.1| ribonuclease III [Propionibacterium acnes HL036PA1] gi|313823550|gb|EFS61264.1| ribonuclease III [Propionibacterium acnes HL036PA2] gi|314924611|gb|EFS88442.1| ribonuclease III [Propionibacterium acnes HL036PA3] gi|314962025|gb|EFT06126.1| ribonuclease III [Propionibacterium acnes HL002PA2] gi|315087196|gb|EFT59172.1| ribonuclease III [Propionibacterium acnes HL002PA3] Length = 265 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALTH S + + + ERLEFLGD IL + ++ L+ F EG+L+ +++V Sbjct: 53 LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 112 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + Q+AR+L + I++ + TSI AD E+L+ A+ L G+ V Sbjct: 113 STVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPDVLRLV 172 Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + A +SG D KT LQE+ P Y++ SGPDH+ R+ + Sbjct: 173 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 230 Query: 197 GLAPAQGMDCSKRAAEQVAA 216 G A +K+ AEQ AA Sbjct: 231 GRLHAAYTGHNKKEAEQGAA 250 >gi|301312334|ref|ZP_07218251.1| ribonuclease III [Bacteroides sp. 20_3] gi|300829756|gb|EFK60409.1| ribonuclease III [Bacteroides sp. 20_3] Length = 280 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 15/226 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L K +G+ N + E+AL H S S + + ERLEFLGD IL ++ +++ Sbjct: 24 YLSLSKILGFYPDNLQIYEQALLHKSSSVETDDGKWLNNERLEFLGDGILDAAVADIVYK 83 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + +EG L+ + +V ET ++VA +L L + S+ + S + + +E+ Sbjct: 84 RYPNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYST----KINSHNNHMYGNALEA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178 LI A+YLD G +V F+ ++ + R + K+ L EW+ K ++ + + Sbjct: 140 LIGAIYLDQGYDVCYKFIRDVMIEKYIDVDTLVRKEINFKSNLIEWSQ-KNKISISFDL- 197 Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 S DHD P F +++ G G+ SK+ ++Q A+ +KR Sbjct: 198 IESFTDHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKR 243 >gi|149371093|ref|ZP_01890688.1| putative ribonuclease III [unidentified eubacterium SCB49] gi|149355879|gb|EDM44437.1| putative ribonuclease III [unidentified eubacterium SCB49] Length = 247 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 106/216 (49%), Gaps = 12/216 (5%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63 ++K +G+ + ++ E+A TH S + +E +YERLEFLGD +L +I+ L+ Sbjct: 21 VIKKLLGFKPKDITIYEEAFTHRSTNEKTREGHAQNYERLEFLGDAMLSAVIAAHLYKKV 80 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ + +VS E +++ R+L+L +R + +++ F ++ +V ESL+ Sbjct: 81 PGGNEGYLTKMRSKVVSREHLNELGRDLELIKHLRTTIPIKQ----FGGNVHGNVFESLV 136 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWAHAKFGVTPEYKVTFR 180 A+YLD G F++K + + K K+ EW K ++ V Sbjct: 137 GAIYLDRGYRYCEKFINKRVIKPYVDIKKLEGKVISYKSLFIEWCQ-KHKSQFKFAVYED 195 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +G D F V + + + + SK+ AE++AA Sbjct: 196 TGNDKLKHFAVKLHLDNVVVGKARATSKKKAEEMAA 231 >gi|288925905|ref|ZP_06419835.1| ribonuclease III [Prevotella buccae D17] gi|288337329|gb|EFC75685.1| ribonuclease III [Prevotella buccae D17] Length = 370 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 18/230 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y++L IG+ + L E+AL H S+ + + ERLEFLGD IL ++ ++F Sbjct: 19 YTSLYDIIGFYPRDIRLYEQALMHKSVMRRNAKGRPVNNERLEFLGDAILDAIVGDIVFK 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV +T +++A+E+ ++ I + S + + + E+ Sbjct: 79 HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGISQLILSNG----HNSSHNSYLGGNAFEA 134 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ ALYLD G + F+ K + + K + K++L EW K V ++K+ Sbjct: 135 LVGALYLDRGYDACMKFMQKRILSQMINIDKVAYKEVNFKSKLIEWGQ-KNRVKLDFKL- 192 Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223 G D D P F I G G SK+ ++Q A+ E LKRE Sbjct: 193 LSQGKDKDGNPMFAYQAVIEGCEGGTGKGYSKKESQQTASKLTLEKLKRE 242 >gi|88808139|ref|ZP_01123650.1| putative ribonuclease III [Synechococcus sp. WH 7805] gi|88788178|gb|EAR19334.1| putative ribonuclease III [Synechococcus sp. WH 7805] Length = 269 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 98/201 (48%), Gaps = 6/201 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +ALTH+S +E+LEFLGD +L L S + + GE S LVS Sbjct: 61 LNEALTHTS--SGLHPHHEQLEFLGDAVLRLAASEFIAVAYPQMPVGERSSLRAQLVSDR 118 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 +Q+ + + + R+ D + T I+A++ E+LI A+Y G++ T++ + Sbjct: 119 WLTQLGEAITIEEWWRIGPKASGDPTAAAT-IRAELSEALIGAMYRIAGLQAVQTWLTPH 177 Query: 143 WKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLA 199 W++ A+ + R ++K+ LQEW+ + P Y + S DP RF V + Sbjct: 178 WQRSAEAVLADPHRGNSKSALQEWSQGRGLGLPRYACSEVSQRHGDPKRFQASVTLPPDL 237 Query: 200 PAQGMDCSKRAAEQVAAAEVL 220 A G S+R AEQ AA ++ Sbjct: 238 AADGWGGSRREAEQQAAEALM 258 >gi|332881433|ref|ZP_08449083.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680809|gb|EGJ53756.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 297 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 22/227 (9%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNH 62 YS+ K +G+ + E+AL H S S Q S+ ERLEFLGD IL ++ ++F H Sbjct: 21 YSSFYKILGFYPHHIQYYEQALHHKSSSIKKQGSWINNERLEFLGDAILDAVVGDIVFRH 80 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F +EG L+ + +V ET +++A E+ L I +SS S+M + E++ Sbjct: 81 FKGKREGFLTNTRSKIVQRETLNRLAVEIGLDKLI-ISSTHSSTHNSYMC---GNAFEAM 136 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTF 179 + A+YLD G F+ K + + K + K++L EW + ++TF Sbjct: 137 VGAIYLDRGYSYCMRFIGKRIMTQLINIDKLAYKEVNFKSKLIEWGQKR-----RVEITF 191 Query: 180 ------RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 R G P FT + I G+ +G SK+ ++Q+AA + L Sbjct: 192 DLIDQAREGSS-TPVFTTQITIEGVTCCKGRGYSKKESQQLAAKDTL 237 >gi|313807892|gb|EFS46373.1| ribonuclease III [Propionibacterium acnes HL087PA2] gi|313825876|gb|EFS63590.1| ribonuclease III [Propionibacterium acnes HL063PA1] gi|314986461|gb|EFT30553.1| ribonuclease III [Propionibacterium acnes HL005PA2] gi|314990820|gb|EFT34911.1| ribonuclease III [Propionibacterium acnes HL005PA3] gi|315083515|gb|EFT55491.1| ribonuclease III [Propionibacterium acnes HL027PA2] gi|327329789|gb|EGE71545.1| ribonuclease III [Propionibacterium acnes HL096PA3] gi|327446474|gb|EGE93128.1| ribonuclease III [Propionibacterium acnes HL013PA2] gi|328752230|gb|EGF65846.1| ribonuclease III [Propionibacterium acnes HL020PA1] Length = 265 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALTH S + + + ERLEFLGD IL + ++ L+ F EG+L+ +++V Sbjct: 53 LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 112 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + Q+AR+L + I++ + TSI AD E+L+ A+ L G+ V Sbjct: 113 STVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPDVLRLV 172 Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + A +SG D KT LQE+ P Y++ SGPDH+ R+ + Sbjct: 173 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 230 Query: 197 GLAPAQGMDCSKRAAEQVAA 216 G A +K+ AEQ AA Sbjct: 231 GRLHAAYTGHNKKEAEQGAA 250 >gi|183981795|ref|YP_001850086.1| ribonuclease III Rnc [Mycobacterium marinum M] gi|183175121|gb|ACC40231.1| ribonuclease III Rnc [Mycobacterium marinum M] Length = 241 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 95/188 (50%), Gaps = 20/188 (10%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 L+ ALTH S ++ + ERLEFLGD +LGL I+ LF+ EG+L+ S+V Sbjct: 18 LVTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDELFHRHPERSEGDLAKLRASVV 77 Query: 80 SAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA- 135 + + + VAR L L + + + + +SI AD +ESL+ A+YL G+EVA Sbjct: 78 NTQALADVARHLSEHGLGAHMLLGRGEANTGGADKSSILADGMESLLGAIYLHHGMEVAR 137 Query: 136 -------GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G +D L +G D KT LQE ++ P Y VT +GPDH Sbjct: 138 EAILRIFGPLLD---AAPTLGAG---LDWKTSLQELTASRSLGAPSYAVT-STGPDHHKE 190 Query: 189 FTVVVEIS 196 FT VV ++ Sbjct: 191 FTAVVVVN 198 >gi|255027417|ref|ZP_05299403.1| ribonuclease III [Listeria monocytogenes FSL J2-003] Length = 151 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 78/141 (55%), Gaps = 4/141 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDK 141 S I ALYLD GI+ TF+++ Sbjct: 123 SFIGALYLDNGIDKVVTFLER 143 >gi|313836649|gb|EFS74363.1| ribonuclease III [Propionibacterium acnes HL037PA2] gi|314928156|gb|EFS91987.1| ribonuclease III [Propionibacterium acnes HL044PA1] gi|314972155|gb|EFT16252.1| ribonuclease III [Propionibacterium acnes HL037PA3] gi|328907982|gb|EGG27742.1| ribonuclease III [Propionibacterium sp. P08] Length = 259 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALTH S + + + ERLEFLGD IL + ++ L+ F EG+L+ +++V Sbjct: 47 LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 106 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + Q+AR L + +++ + TSI AD E+L+ A+ L G+ A V Sbjct: 107 STVSLGQLARRLGIGPQVKLGRGEERTGGHDKTSILADTTEALLGAVELSSGLPDALRLV 166 Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + A +SG D KT LQE+ P Y++ SGPDH+ R+ + Sbjct: 167 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 224 Query: 197 GLAPAQGMDCSKRAAEQVAA 216 G A +K+ AEQ AA Sbjct: 225 GRLHAAYTGHNKKEAEQGAA 244 >gi|260578984|ref|ZP_05846886.1| ribonuclease III [Corynebacterium jeikeium ATCC 43734] gi|258602849|gb|EEW16124.1| ribonuclease III [Corynebacterium jeikeium ATCC 43734] Length = 244 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 22 LLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S ++ + + ERLEFLGD +LGL ++ L+ F E ++S + +V Sbjct: 37 LLRLALTHRSFANENGHLPNNERLEFLGDAVLGLAVAEQLYRQFPERAESDISKMRSGVV 96 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 + + VAR L + +I + SI AD VES++ A+YL G +VA V Sbjct: 97 NMYALADVARHLGMGDYILLGRGEMLTGGKDKHSILADSVESMLGAIYLHHGFDVARATV 156 Query: 140 DKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + + ++ ++ D KT L E P Y+V GP+HD F V I Sbjct: 157 LRLFAEKITEAPTTGLTMDWKTVLLEKLSDMKLPLPTYEVR-GEGPEHDKTFYATVTIED 215 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKR 222 L G +K+ AE AA + +++ Sbjct: 216 LV-THGEGHTKKVAEHAAAKQAVQK 239 >gi|194757473|ref|XP_001960989.1| GF13644 [Drosophila ananassae] gi|190622287|gb|EDV37811.1| GF13644 [Drosophila ananassae] Length = 1303 Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 106/225 (47%), Gaps = 17/225 (7%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ IG F + LL +A T SI +H S +RLEFLGD +L L+ S L+ HF Sbjct: 956 TKFEESIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1015 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS+ +SLV+ T + V +L + + +DL+ T +AD++E+ + Sbjct: 1016 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPQYANPKADLK-------TKDRADLLEAFLG 1068 Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEYK 176 ALY+D G+ F V + + + + D K++LQ+ + P YK Sbjct: 1069 ALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1128 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V SGP + + V V A S + AE AA + L+ Sbjct: 1129 VVEASGPTNTRVYKVAVYFRSKRLATSNGSSIQQAEMNAAKQALE 1173 Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S+I+H+ ERLEFLGD ++ L S LF F +EG L+ ++V + + + Sbjct: 805 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 859 Query: 88 ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144 A++L L F+ + D+C + A+ E+L+ AL LDGGI+VA F D ++ Sbjct: 860 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 917 Query: 145 Q 145 Q Sbjct: 918 Q 918 >gi|118617606|ref|YP_905938.1| ribonuclease III [Mycobacterium ulcerans Agy99] gi|118569716|gb|ABL04467.1| ribonuclease III Rnc [Mycobacterium ulcerans Agy99] Length = 243 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 95/188 (50%), Gaps = 20/188 (10%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 L+ ALTH S ++ + ERLEFLGD +LGL I+ LF+ EG+L+ S+V Sbjct: 20 LVTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDELFHRHPERSEGDLAKLRASVV 79 Query: 80 SAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA- 135 + + + VAR L L + + + + +SI AD +ESL+ A+YL G+EVA Sbjct: 80 NTQALADVARHLSDHGLGAHMLLGRGEANTGGADKSSILADGMESLLGAIYLHHGMEVAR 139 Query: 136 -------GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G +D L +G D KT LQE ++ P Y VT +GPDH Sbjct: 140 EAILRIFGPLLD---AAPTLGAG---LDWKTSLQELTASRSLGAPSYAVT-STGPDHHKE 192 Query: 189 FTVVVEIS 196 FT VV ++ Sbjct: 193 FTAVVVVN 200 >gi|225012041|ref|ZP_03702478.1| Ribonuclease III [Flavobacteria bacterium MS024-2A] gi|225003596|gb|EEG41569.1| Ribonuclease III [Flavobacteria bacterium MS024-2A] Length = 236 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 8/138 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L+K++ N+ L +KA THSS++ +E ++ERLEFLGD +L +++ LFN Sbjct: 11 LQKKLNIRTRNKELYKKAFTHSSVNLKDKEGNTINFERLEFLGDALLSTIVAEYLFNFHP 70 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 AKEGEL+ +VS + + +++ L +SS + +F +I +++ESLI Sbjct: 71 EAKEGELTKLRAKIVSRSQLNSIGKQMGLFELADISSHHK----TFGENIHGNLIESLIG 126 Query: 125 ALYLDGGIEVAGTFVDKY 142 AL++D G +V KY Sbjct: 127 ALFIDKGYNKTKDYVLKY 144 >gi|329120775|ref|ZP_08249436.1| ribonuclease III [Neisseria bacilliformis ATCC BAA-1200] gi|327460145|gb|EGF06483.1| ribonuclease III [Neisseria bacilliformis ATCC BAA-1200] Length = 316 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 107/217 (49%), Gaps = 7/217 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ IG+ FA+ +LL++ALTH S S + E R EF+GD IL ++ +LF+ + E Sbjct: 87 LQAAIGHTFADPALLDRALTHRSFSSRHNE---RFEFVGDAILNYTVARMLFDAYPQLPE 143 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS +LV+ ++ A L++ + + + K SI AD +E++ AA+ Sbjct: 144 GRLSRLRANLVNQTVLAETAAALNIGDALLLGAGELKSGGFRRPSILADAMEAVFAAVSF 203 Query: 129 DGGIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D A V + + +R K +DAKT LQE A+ P+Y++ + G Sbjct: 204 DADFAAAEAVVRRLFAERVANIDCGEKEAKDAKTRLQEALQAQRFALPKYRIDKQEGEGS 263 Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 FTV ++ L + +RAAEQ AA L+ Sbjct: 264 GAWFTVSCDLGELGFVSTAQAAGRRAAEQEAAKTALE 300 >gi|331698524|ref|YP_004334763.1| Ribonuclease 3 [Pseudonocardia dioxanivorans CB1190] gi|326953213|gb|AEA26910.1| Ribonuclease 3 [Pseudonocardia dioxanivorans CB1190] Length = 238 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 100/207 (48%), Gaps = 16/207 (7%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S ++ + ERLEFLGD +L ++++ L+ EG+L+ S+V Sbjct: 19 LLTLALTHRSYAYENGGLPTNERLEFLGDSVLSIVVTERLYLDHPDLPEGQLAKLRASVV 78 Query: 80 SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE--- 133 + + VA EL L + + + SI AD E+LI A+YL G+E Sbjct: 79 NMNALAGVAAELVPDGLGAHLFLGRGEELTGGRAKASILADATEALIGAVYLQHGLETSR 138 Query: 134 --VAGTFVDKYWKQRALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPRFT 190 + F D L +G D KT LQE A A+ GV PEY++T GPDH FT Sbjct: 139 DVIHRLFADLLRNAPLLGAG---LDWKTSLQELTAAAELGV-PEYRIT-EDGPDHLKTFT 193 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAA 217 + G G +K+ AEQ AAA Sbjct: 194 ATAVVGGRELGSGDGRTKKEAEQKAAA 220 >gi|75907020|ref|YP_321316.1| ribonuclease III [Anabaena variabilis ATCC 29413] gi|75700745|gb|ABA20421.1| RNAse III [Anabaena variabilis ATCC 29413] Length = 242 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 88/160 (55%), Gaps = 6/160 (3%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL+ ALTH ++S S +YE+LEF+GD ++ L + +L+ + G+ + + LVS Sbjct: 31 LLDLALTHPTVSES--ANYEQLEFVGDAVVRLAAAVMLWETYPDCPVGDFAAIRSVLVSD 88 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVD 140 +Q+ARE L + V+ D + + AD E+++ ALYL +E+ ++D Sbjct: 89 RILAQLAREYGLELHLLVAGSATSDKIGQESRL-ADAFEAVLGALYLSTSNLELIRPWLD 147 Query: 141 KYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++Q A ++ R + K LQEW A+F V PEY+V Sbjct: 148 HHFRQLAAEIRLDPARLNYKAALQEWTQAQFKVLPEYRVV 187 >gi|256419408|ref|YP_003120061.1| ribonuclease III [Chitinophaga pinensis DSM 2588] gi|256034316|gb|ACU57860.1| ribonuclease III [Chitinophaga pinensis DSM 2588] Length = 253 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 17/228 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y L +G+A N SL E AL+H S + ES ERLE+LGD ILG +I LF + Sbjct: 32 YKDLYNLLGFAPGNFSLYEVALSHRSSKEKFLESNERLEYLGDAILGAIIGDYLFKKYPY 91 Query: 66 AKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG L+ + +V+ + + +A ++ L + + +S L+ ++ I + +E+L Sbjct: 92 KTEGYLTEMRSKIVNRQQLNDIAIKMGLRKLTIYDKYNSFLK------ISQIFGNTLEAL 145 Query: 123 IAALYLDGGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 + A+YLD G FV + Y L++ + K +L WA+ K G T E+ + Sbjct: 146 VGAVYLDKGYNRTKQFVHQRLIVPYIDLEQLEN--VEMNHKNKLYGWAN-KHGKTLEFDL 202 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + FTV + G G +K+ A Q+AA + ++ G+ Sbjct: 203 LEEQMDNGRRIFTVGAVVDGELICSGKAFNKKDASQIAAQQAIELLGL 250 >gi|86134672|ref|ZP_01053254.1| ribonuclease III [Polaribacter sp. MED152] gi|85821535|gb|EAQ42682.1| ribonuclease III [Polaribacter sp. MED152] Length = 245 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 110/226 (48%), Gaps = 22/226 (9%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 Y L+ + ++ S +KA TH S+ S +YERLEFLGD ILG +I++ L+ Sbjct: 19 YFELKTLLNFSPKKISKYKKAFTHRSVQMTDSKGNPINYERLEFLGDSILGSVIASYLYK 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ + +VS E +++ ++L+L F++ + D + +I ++ E+ Sbjct: 79 KVPTGSEGYLTQMRSKIVSREHLNELGKDLELIRFVKSNIDQN----TVGDNIHGNIFEA 134 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR------DAKTELQEWAHAKFGVTPEY 175 L+ A+YLD G A F+ ++ L R K + EW + +Y Sbjct: 135 LVGAIYLDRGYNYAQKFI---YENVILPYVNIERLEGKITSYKGLIIEWCQKQ---KKKY 188 Query: 176 KV-TFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 K T+ SG + F+V V I G A+G SK+ AE+ A+ V Sbjct: 189 KFETYEDSGNEAIKHFSVKVSIDGEQVAKGRATSKKKAEEQASKRV 234 >gi|150024312|ref|YP_001295138.1| ribonuclease III [Flavobacterium psychrophilum JIP02/86] gi|149770853|emb|CAL42318.1| Ribonuclease III [Flavobacterium psychrophilum JIP02/86] Length = 246 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 12/221 (5%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTL 58 L +S LEK +G+ N + +A TH S++ ++ +YERLEF+GD +LG +I+ Sbjct: 17 GLFFSKLEKILGFKPLNLTHFRRAFTHRSMNKLDEKGNPMNYERLEFMGDAMLGSVIAAH 76 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LFN + EG L+ + +VS E +++ ++L+L F+ L+ +F +I ++ Sbjct: 77 LFNMSPTGDEGYLTKMRSKIVSREHLNELGKDLNLIQFLESKVTLQ----NFGENIHGNL 132 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWAHAKFGVTPEY 175 E+ + A+YLD G F+ K + + K K+ L EW + V Y Sbjct: 133 FEAFVGAIYLDRGFVYCEKFIHKKVIKPYVDIDKLEGKVISYKSLLIEWCQKEKRVF-HY 191 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + F V + I G A+ SK+ AE++A+ Sbjct: 192 DIYEDEDAGKLKYFGVKLSIDGKVVAKARATSKKKAEEIAS 232 >gi|304373283|ref|YP_003856492.1| Ribonuclease III [Mycoplasma hyorhinis HUB-1] gi|304309474|gb|ADM21954.1| Ribonuclease III [Mycoplasma hyorhinis HUB-1] Length = 225 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 5/146 (3%) Query: 21 SLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 SL E+A TH S H + YE LEFLGD +L L S +F + D+ EG ++ + + Sbjct: 19 SLYEQAFTHKSYHHVRPNKPHYEMLEFLGDSLLNLQTSLYIFKNIDAKNEGNATILRSQI 78 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 VS+ + ++++ +L L+ +++V+ + + + T I+AD++ESL AA+YLD + F Sbjct: 79 VSSVSFAKISEKLQLSKYLKVAKGSEEILNN--TKIKADILESLTAAIYLDQDKKTFEDF 136 Query: 139 VDKYWKQRALK-SGKFRRDAKTELQE 163 V K K S K +D K+E QE Sbjct: 137 VKKILHSLVKKQSKKVIKDPKSEFQE 162 >gi|256842428|ref|ZP_05547931.1| ribonuclease III [Parabacteroides sp. D13] gi|262384660|ref|ZP_06077793.1| ribonuclease III [Bacteroides sp. 2_1_33B] gi|256736035|gb|EEU49366.1| ribonuclease III [Parabacteroides sp. D13] gi|262293641|gb|EEY81576.1| ribonuclease III [Bacteroides sp. 2_1_33B] Length = 280 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 17/227 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L K +G+ N + E+AL H S S + + ERLEFLGD IL ++ +++ Sbjct: 24 YLSLSKILGFYPDNLQIYEQALLHKSSSVETGDGKWLNNERLEFLGDGILDAAVADIVYK 83 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + +EG L+ + +V ET ++VA +L L + S+ + S + + +E+ Sbjct: 84 RYPNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYST----KINSHNNHMYGNALEA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKV 177 LI A+YLD G +V F+ ++ + R + K+ L EW+ K ++ + Sbjct: 140 LIGAIYLDQGYDVCYKFIRDVMIEKYIDVDMLVRKEINFKSNLIEWSQKNKISISFDLIE 199 Query: 178 TFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +F DHD P F +++ G G+ SK+ ++Q A+ +KR Sbjct: 200 SF---TDHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKR 243 >gi|150009420|ref|YP_001304163.1| ribonuclease III [Parabacteroides distasonis ATCC 8503] gi|298377793|ref|ZP_06987743.1| ribonuclease III [Bacteroides sp. 3_1_19] gi|149937844|gb|ABR44541.1| ribonuclease III [Parabacteroides distasonis ATCC 8503] gi|298265239|gb|EFI06902.1| ribonuclease III [Bacteroides sp. 3_1_19] Length = 280 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 15/226 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L K +G+ N + E+AL H S S + + ERLEFLGD IL ++ +++ Sbjct: 24 YLSLSKILGFYPDNLQIYEQALLHKSSSVETGDGKWLNNERLEFLGDGILDAAVADIVYK 83 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + +EG L+ + +V ET ++VA +L L + S+ + S + + +E+ Sbjct: 84 RYPNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYST----KINSHNNHMYGNALEA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178 LI A+YLD G +V F+ ++ + R + K+ L EW+ K ++ + + Sbjct: 140 LIGAIYLDQGYDVCYKFIRDVMIEKYIDVDMLVRKEINFKSNLIEWSQ-KNKISISFDL- 197 Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 S DHD P F +++ G G+ SK+ ++Q A+ +KR Sbjct: 198 IESFTDHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKR 243 >gi|321475336|gb|EFX86299.1| hypothetical protein DAPPUDRAFT_442 [Daphnia pulex] Length = 939 Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 107/225 (47%), Gaps = 16/225 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 E+ IG F + LL +A T SI + S +RLEFLGD +L L+ S L+ F Sbjct: 704 FEESIGIKFTHIRLLARAFTDRSIGFNNLTLGSNQRLEFLGDTVLQLIASEYLYKFFPEH 763 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG LS+ +SLV+ T + V +L + ++ SS T +AD++E+ + AL Sbjct: 764 HEGHLSLLRSSLVNNRTQAVVCDDLGMTNYALYSS----PKAELKTKDRADLLEAFLGAL 819 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGV------TPEYKV 177 Y+D G+E TF + R L+ + D K++LQ+ + P YKV Sbjct: 820 YVDKGLEDCQTFCQVCFFPR-LQDFILHQDWNDPKSKLQQCCLTLRTMDGGEPDIPVYKV 878 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP + ++V V G+ A S + AE AA E L++ Sbjct: 879 IECKGPTNTRVYSVAVYFRGIRLASASGHSIQQAEMNAAKEALEK 923 Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 9/116 (7%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 L +K T SSI+H+ ERLEFLGD ++ L S L++ F +EG L+ ++V Sbjct: 545 LGKKQETESSITHN-----ERLEFLGDAVVEFLASIHLYHMFPDLEEGGLATYRAAIVQN 599 Query: 82 ETCSQVARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 + +Q+A+ L L F+ + SDL D+ + A+ E+L+ AL+LDGGI VA Sbjct: 600 QHLAQLAKNLQLDQFMLYAHGSDLCHDL--ELRHAMANCFEALMGALFLDGGINVA 653 >gi|73662845|ref|YP_301626.1| ribonuclease III [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|90101648|sp|Q49X17|RNC_STAS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|72495360|dbj|BAE18681.1| dsRNA-specific ribonuclease RNase III [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 244 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 11/219 (5%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSA 66 + + F L ++A +HSS + + + ERLEFLGD +L L +S LF+ + Sbjct: 22 QELNLDFNRVDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKYPEL 81 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ ++V + A ++ L I + K S+ +D E+ + AL Sbjct: 82 PEGNLTKMRATIVCEPSLVIFANKIQLNDLILLGKGEEKTGGRTRPSLVSDAFEAFVGAL 141 Query: 127 YLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 YLD G+E F ++ Y + L D KT+ QE+ H + Y++ G Sbjct: 142 YLDQGLEAVWQFSEQIIFPYVEDDELDG---VVDFKTQFQEYVHRQNKGDVTYRLINEEG 198 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P H FT V + A A+G +K+ +EQ AA K Sbjct: 199 PAHHRLFTSEVILEEDAVAEGKGKTKKESEQKAAERAYK 237 >gi|265752863|ref|ZP_06088432.1| ribonuclease 3 [Bacteroides sp. 3_1_33FAA] gi|263236049|gb|EEZ21544.1| ribonuclease 3 [Bacteroides sp. 3_1_33FAA] Length = 308 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 114/219 (52%), Gaps = 13/219 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y K +G+ + S+ E+AL H S+S ++ + ERLEFLGD IL +++ +++ Sbjct: 20 YFRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIVYK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F+ +EG L+ + +V ET +++A E+ L I+ ++ + S+M + E+ Sbjct: 80 RFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTAR-QSSHNSYMC---GNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKV 177 L+ A+YLD G F++ + K R + K++L EW+ +F VT E + Sbjct: 136 LVGAIYLDRGYRACKYFMEHRIIGSYINLEKISRKEVNFKSKLIEWSQKNRFEVTFEL-I 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T ++P F V + G++ +G SK+ ++Q+AA Sbjct: 195 TQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAA 233 >gi|150003618|ref|YP_001298362.1| putative ribonuclease III [Bacteroides vulgatus ATCC 8482] gi|189043292|sp|A6KZ76|RNC_BACV8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|149932042|gb|ABR38740.1| putative ribonuclease III [Bacteroides vulgatus ATCC 8482] Length = 308 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 114/219 (52%), Gaps = 13/219 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y K +G+ + S+ E+AL H S+S ++ + ERLEFLGD IL +++ +++ Sbjct: 20 YLRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIVYK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F+ +EG L+ + +V ET +++A E+ L I+ ++ + S+M + E+ Sbjct: 80 RFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTAR-QSSHNSYMC---GNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKV 177 L+ A+YLD G F++ + K R + K++L EW+ +F VT E + Sbjct: 136 LVGAIYLDRGYRACKYFMEHRIIGPYINLEKISRKEVNFKSKLIEWSQKNRFEVTFEL-I 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T ++P F V + G++ +G SK+ ++Q+AA Sbjct: 195 TQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAA 233 >gi|157119283|ref|XP_001653338.1| ribonuclease iii [Aedes aegypti] gi|108875392|gb|EAT39617.1| ribonuclease iii [Aedes aegypti] Length = 1374 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 14/225 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + E IG F + LL +A T SI + S +RLEFLGD +L L+ S L+ HF Sbjct: 946 TKFEDAIGVNFNHIRLLARAFTDRSIGFTNLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1005 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS+ +SLV+ T + V +L + ++ V S+ + D+ T +AD++E+ + Sbjct: 1006 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMTTYA-VYSNPKADL---KTKDRADLLEAFLG 1061 Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE---YK 176 ALY+D G+E TF V + + + + D K++LQ+ G P+ YK Sbjct: 1062 ALYVDKGLEHCETFCHVCLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPIYK 1121 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V +GP + +TV V G A S + AE AA + L+ Sbjct: 1122 VIECNGPTNTRVYTVAVYFRGKRLACSNGHSIQQAEMNAAKKALE 1166 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S+I+H+ ERLEFLGD ++ + S LF+ F +EG L+ ++V + + + Sbjct: 795 TDSNITHN-----ERLEFLGDAVVEFITSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVL 849 Query: 88 ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVA 135 A+ L L F+ + D+C + A+ E+L+ AL LDGGIE A Sbjct: 850 AKTLHLEEFMLYAHG--SDLCHELELRHALANCFEALMGALLLDGGIETA 897 >gi|212692274|ref|ZP_03300402.1| hypothetical protein BACDOR_01770 [Bacteroides dorei DSM 17855] gi|237726085|ref|ZP_04556566.1| ribonuclease 3 [Bacteroides sp. D4] gi|212665151|gb|EEB25723.1| hypothetical protein BACDOR_01770 [Bacteroides dorei DSM 17855] gi|229435893|gb|EEO45970.1| ribonuclease 3 [Bacteroides dorei 5_1_36/D4] Length = 308 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 114/219 (52%), Gaps = 13/219 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y K +G+ + S+ E+AL H S+S ++ + ERLEFLGD IL +++ +++ Sbjct: 20 YFRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIVYK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F+ +EG L+ + +V ET +++A E+ L I+ ++ + S+M + E+ Sbjct: 80 RFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTAR-QSSHNSYMC---GNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKV 177 L+ A+YLD G F++ + K R + K++L EW+ +F VT E + Sbjct: 136 LVGAIYLDRGYRACKYFMEHRIIGSYINLEKISRKEVNFKSKLIEWSQKNRFEVTFEL-I 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T ++P F V + G++ +G SK+ ++Q+AA Sbjct: 195 TQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAA 233 >gi|213963479|ref|ZP_03391733.1| ribonuclease III [Capnocytophaga sputigena Capno] gi|213953887|gb|EEB65215.1| ribonuclease III [Capnocytophaga sputigena Capno] Length = 252 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 15/219 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 Y+ ++ +G+A N S +A TH S + ++SYERLEFLGD ILG +I+ +F + Sbjct: 23 YNKIKNLLGFAPKNLSYYSEAFTHPSYQFQKATRKSYERLEFLGDAILGAVIADYIFTNA 82 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ + +V +Q+ +++ L F+R R+ +I ++ E+LI Sbjct: 83 PEQDEGYLTKMRSKIVERRNLNQLGKDMGLLDFLRTKLTPRQ----LGNNITGNLFEALI 138 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWAHAK---FGVTPEYKV 177 A+YLD G + F+++ + K+ L EW F E + Sbjct: 139 GAIYLDRGYKACFRFIERELILPHINIKNLEGKVISHKSLLIEWCQKHKLDFAFEAEEDM 198 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 RS + F V + G + + SK+ AE++AA Sbjct: 199 EDRSETKY---FVAKVHVQGFSVTRARSTSKKKAEEIAA 234 >gi|254881153|ref|ZP_05253863.1| ribonuclease III [Bacteroides sp. 4_3_47FAA] gi|294777572|ref|ZP_06743023.1| ribonuclease III [Bacteroides vulgatus PC510] gi|254833946|gb|EET14255.1| ribonuclease III [Bacteroides sp. 4_3_47FAA] gi|294448640|gb|EFG17189.1| ribonuclease III [Bacteroides vulgatus PC510] Length = 308 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 114/219 (52%), Gaps = 13/219 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y K +G+ + S+ E+AL H S+S ++ + ERLEFLGD IL +++ +++ Sbjct: 20 YLRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIVYK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F+ +EG L+ + +V ET +++A E+ L I+ ++ + S+M + E+ Sbjct: 80 RFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTAR-QSSHNSYMC---GNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKV 177 L+ A+YLD G F++ + K R + K++L EW+ +F VT E + Sbjct: 136 LVGAIYLDRGYRACKYFMEHRIIGPYINLEKISRKEVNFKSKLIEWSQKNRFEVTFEL-I 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T ++P F V + G++ +G SK+ ++Q+AA Sbjct: 195 TQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAA 233 >gi|318042834|ref|ZP_07974790.1| putative ribonuclease III [Synechococcus sp. CB0101] Length = 242 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 96/198 (48%), Gaps = 7/198 (3%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 G A + +++ALTH+S + ++E+LEFLGD +L L S L H GE S Sbjct: 26 GLASTGWAAVDEALTHTSAGLAI--NHEQLEFLGDAVLRLAASEYLEQHHPELSVGERSA 83 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGI 132 LVS ++V + ++ +R+ D + T ++A+ E+LI ALY G + Sbjct: 84 LRAQLVSDRWLAEVGEAIGISDALRIGPTAGGDATALST-LRAEATEALIGALYRAFGSL 142 Query: 133 EVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RF 189 ++ W++ RA+ S R + K+ LQEW+ AK P Y+ RS DP RF Sbjct: 143 APVHQWLTPSWERTSRAVLSDPHRGNCKSALQEWSQAKALGLPTYRTKERSKRHGDPQRF 202 Query: 190 TVVVEISGLAPAQGMDCS 207 V + G A+G S Sbjct: 203 HCHVGLEGWISAEGWGGS 220 >gi|315104262|gb|EFT76238.1| ribonuclease III [Propionibacterium acnes HL050PA2] gi|315106730|gb|EFT78706.1| ribonuclease III [Propionibacterium acnes HL030PA1] Length = 265 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALTH S + + + ERLEFLGD IL + ++ L+ F EG+L+ +++V Sbjct: 53 LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 112 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + ++AR+L + I++ + TSI AD E+L+ A+ L G+ V Sbjct: 113 STVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPNVLRLV 172 Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + A +SG D KT LQE+ P Y++ SGPDH+ R+ + Sbjct: 173 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 230 Query: 197 GLAPAQGMDCSKRAAEQVAA 216 G A +K+ AEQ AA Sbjct: 231 GRLHAAYTGHNKKEAEQGAA 250 >gi|119489560|ref|ZP_01622320.1| Ribonuclease III [Lyngbya sp. PCC 8106] gi|119454472|gb|EAW35620.1| Ribonuclease III [Lyngbya sp. PCC 8106] Length = 395 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 23/226 (10%) Query: 17 FANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHFDSAK-EGEL 71 F + LL++ALTH + + + E+LEFLGD +L L L+ + + EGEL Sbjct: 175 FQDARLLQRALTHRTYVFEHPTKTEGDNEQLEFLGDSVLNFLAGDYLYEQYSHRRDEGEL 234 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + R +S V +Q A +L+L ++++ +S+ ++ E+++ A YLD G Sbjct: 235 TRRRSSFVDNSQFAQFAVKLNLGEWMQLGKGEELQGGRTKSSLLSNTFEAVMGAYYLDSG 294 Query: 132 IEVAGTFVDKYWK------------QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 IE + +++ Q+ L D K LQ A PEY V Sbjct: 295 IEAVRELIKPFFESVDTATVEDSIPQQTLI------DVKGRLQNLAQTNDLPIPEYYVVS 348 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G DH FTV V I+ +G K+ AE+ AA + L+ G+ Sbjct: 349 EMGKDHAKIFTVEVRINRKFYGRGTGNKKKEAEKQAAIDALQCLGL 394 >gi|161621795|ref|YP_056158.2| ribonuclease III [Propionibacterium acnes KPA171202] Length = 246 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALTH S + + + ERLEFLGD IL + ++ L+ F EG+L+ +++V Sbjct: 34 LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 93 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + ++AR+L + I++ + TSI AD E+L+ A+ L G+ V Sbjct: 94 STVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPNVLRLV 153 Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + A +SG D KT LQE+ P Y++ SGPDH+ R+ + Sbjct: 154 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 211 Query: 197 GLAPAQGMDCSKRAAEQVAA 216 G A +K+ AEQ AA Sbjct: 212 GRLHAAYTGHNKKEAEQGAA 231 >gi|85057423|ref|YP_456339.1| dsRNA-specific ribonuclease [Aster yellows witches'-broom phytoplasma AYWB] gi|123518419|sp|Q2NJY3|RNC_AYWBP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|84789528|gb|ABC65260.1| dsRNA-specific ribonuclease [Aster yellows witches'-broom phytoplasma AYWB] Length = 237 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 104/208 (50%), Gaps = 9/208 (4%) Query: 19 NRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 N L ++ALTHSS S+ QE ERLEFLGD I+GLL++ L++ EG ++ + Sbjct: 17 NLVLYKQALTHSSYSNEQTPPQEDNERLEFLGDAIVGLLMADYLYSQ-SKEDEGIMTKKR 75 Query: 76 NSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 V ++ + A++++L +++ + + KD + I AD E+L A+YLD G Sbjct: 76 AQAVCEKSLTIYAQKIELQNYLLLGKGEKNKDFNA--KGIMADTFEALFGAIYLDLGYLT 133 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 A K+ + D KT+LQE ++ T +YK+ GP H F V Sbjct: 134 AKKVFHNIVLPHLAKT-IYIIDFKTQLQEIVQSE-KKTIQYKIVQEQGPAHSKNFVAEVY 191 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + G +K++AEQ AA + L + Sbjct: 192 LEKNLLGTGEGSTKKSAEQKAAQQALSK 219 >gi|260654634|ref|ZP_05860124.1| ribonuclease III [Jonquetella anthropi E3_33 E1] gi|260630650|gb|EEX48844.1| ribonuclease III [Jonquetella anthropi E3_33 E1] Length = 239 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 77/217 (35%), Positives = 112/217 (51%), Gaps = 12/217 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFD 64 S +KR G F + +LL+ ALTH S + +RLEFLGD ++ +S LF Sbjct: 15 LSAFQKRSGLVFRDPALLDLALTHRSFAAERGGGDNQRLEFLGDALIEGAVSAELFCSRT 74 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+L+ R LV ++ ++ A +L L +R + +++AD E+L A Sbjct: 75 NDDEGKLTRRRARLVCQKSLARCADKLGLGELLRRG----RGQTEATEAMKADAFEALAA 130 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 ALYLDGG E VD + DAKT L +W A VT ++ T R+GPD Sbjct: 131 ALYLDGGAEAMRGLVDLILSEPLAPL-----DAKTLLCQWG-ASCRVTVTFEETGRTGPD 184 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H+P F V V+ +G A G S+ AAEQ AA +V++ Sbjct: 185 HEPHFFVRVQ-AGSETACGEGPSRLAAEQDAAGKVIR 220 >gi|187735104|ref|YP_001877216.1| Ribonuclease III [Akkermansia muciniphila ATCC BAA-835] gi|187425156|gb|ACD04435.1| Ribonuclease III [Akkermansia muciniphila ATCC BAA-835] Length = 231 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 92/211 (43%), Gaps = 6/211 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + ++ LE ++GY F N LL +ALTH S + +YERLEFLGD IL L ++ L++ Sbjct: 1 MNHTALEDKLGYRFNNPDLLVQALTHPSTDSKPETRRAYERLEFLGDAILQLAVTQYLYH 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H + EGEL+ VS + L L I + + SI A+ ES Sbjct: 61 HMPQSPEGELTQLRARTVSRANLGKYGFILGLDKHIALGKGEERAGGRGKNSIIANTFES 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178 + A+ LD E A + + AL S + K ELQ TP Y+ Sbjct: 121 VFGAMSLDSDYETAKAVALRVLHE-ALDSAASHPKEINPKGELQAILQDILPETPSYETE 179 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + D + RF V G A G SKR Sbjct: 180 EKGPRDAENRFESRVFWHGHAIGAGSGASKR 210 >gi|316976669|gb|EFV59916.1| putative RNase3 domain protein [Trichinella spiralis] Length = 1460 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 + + E+RIG F + LL +A T + +++ +RLEFLGD +L L+ + L+ H Sbjct: 783 KLTEFEQRIGVRFNHIRLLARAFTRKCVGYNFLTLGHNQRLEFLGDSVLQLVTTEYLYKH 842 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQADVVES 121 F +EG LS+ +SLV+ T + + +L++ +FI + + LR + +AD+VE+ Sbjct: 843 FPDHQEGHLSLLRSSLVNNRTQAVICDDLEIPNFILQPPAFLRNEPQELRMKDKADLVEA 902 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQE 163 + AL++D ++ FV + R + + +R D K++LQ+ Sbjct: 903 FLGALFVDHSLDYCAAFVRHCFLPRLKQFIEEQRWCDPKSQLQQ 946 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 9/112 (8%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLE+LGD ++ L + LF F +EG L+ +V S++A ++ L F+ + Sbjct: 640 ERLEYLGDAVIEFLTTIHLFYIFPDLEEGALAPYRTLMVQNSHLSKLAAKMGLDEFMLFA 699 Query: 101 SDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY-----WKQ 145 D+C M A+ E+++ A+YLDGG+ VA ++ W Q Sbjct: 700 HG--PDLCFEEDMRHAMANAFEAILGAVYLDGGVHVADRVFGRFLFPPDWNQ 749 >gi|155371010|ref|YP_001426544.1| hypothetical protein ATCV1_Z063L [Acanthocystis turfacea Chlorella virus 1] gi|155124330|gb|ABT16197.1| hypothetical protein ATCV1_Z063L [Acanthocystis turfacea Chlorella virus 1] Length = 268 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 99/232 (42%), Gaps = 31/232 (13%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E IG + +L A +++ + + E++ERLEFLGD +LG LI+ L++ F E Sbjct: 47 IEGLIGMPVCDFNLYVTAFSYNPLEEN-GETFERLEFLGDSVLGFLIARYLYDVFPGKNE 105 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ VS + S++A +L L FI +S D E+LI A+YL Sbjct: 106 GVLTRLRVKFVSGKLLSKLAHQLGLHEFIIMSQKGLYRCWHTNPKTLEDAFEALIGAIYL 165 Query: 129 DGGIEVAGTF---------------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 D GI A F +D K R +K + AK P Sbjct: 166 DLGINAARQFLMSVLTKHVNIYELMIDANHKDRLVKHCRVLNLAK--------------P 211 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + TF G + F V I + +G +++ AEQ AA L R GI Sbjct: 212 TFVTTFERG-GTNSMFVVEARIDNVPHGEGTGTTRKDAEQAAARTALLRLGI 262 >gi|312599268|gb|ADQ91291.1| hypothetical protein BpV2_124 [Bathycoccus sp. RCC1105 virus BpV2] Length = 242 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 103/217 (47%), Gaps = 12/217 (5%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++E +G N L +KA H SI S S+E LEF+GD +LG +I+ LF+ + Sbjct: 6 QSVELLVGTKLTNLDLYQKAFRHKSILKEDESLDGSFETLEFIGDSVLGFVITKFLFDRY 65 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 ++ +EG L+ LV ET + +A +L L +++++ ++ I DV E+L+ Sbjct: 66 ENRQEGFLTKARTKLVRGETLADIATKLGLYNWVQMDEKGMRNEWFKNPKILEDVFEALV 125 Query: 124 AALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 A+Y+D G+ A F+ + + S + K L PEY+V Sbjct: 126 GAIYMDLGLLHAKQFILNIYTNPEYVNMNSIMVDDNFKDHLMRHCQTNNLSLPEYRVL-- 183 Query: 181 SGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +H+ F + V + + +G +K+ AEQ AA Sbjct: 184 ---NHENGIFYIDVYVDNVFLGRGHAKNKKQAEQHAA 217 >gi|322803055|gb|EFZ23143.1| hypothetical protein SINV_00854 [Solenopsis invicta] Length = 1447 Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T SI ++ S +RLEFLGD +L L++S L+ Sbjct: 990 KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1049 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ +T + V +L + + + T +AD++E+ Sbjct: 1050 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGN----PKAELKTKDRADLLEAF 1105 Query: 123 IAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPE 174 + ALY+D G++ F D + + + + D K++LQ+ + P Sbjct: 1106 LGALYVDKGLKYCHIFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1165 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV GP + +TV V G A S + AE +A E L++ Sbjct: 1166 YKVIECKGPTNTRVYTVAVYFQGKRLATASGHSIQEAEMNSAKEALEK 1213 Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 9/113 (7%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 K T SSI+H+ ERLEFLGD ++ L S LF+ F +EG L+ ++V + Sbjct: 838 KTETESSIAHN-----ERLEFLGDAVVEFLTSIHLFHMFPELEEGGLATYRAAIVQNQHL 892 Query: 85 SQVARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 + +A++L+L ++ + SDL D+ + A+ E+L+ +L+LDGGIEVA Sbjct: 893 AVLAKKLNLEEYMLYAHGSDLCHDL--ELRHAMANCFEALMGSLFLDGGIEVA 943 >gi|50840533|gb|AAT83200.1| ribonuclease III [Propionibacterium acnes KPA171202] Length = 366 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALTH S + + + ERLEFLGD IL + ++ L+ F EG+L+ +++V Sbjct: 154 LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 213 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + ++AR+L + I++ + TSI AD E+L+ A+ L G+ V Sbjct: 214 STVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPNVLRLV 273 Query: 140 DKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + A +SG D KT LQE+ P Y++ SGPDH+ R+ + Sbjct: 274 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 331 Query: 197 GLAPAQGMDCSKRAAEQVAA 216 G A +K+ AEQ AA Sbjct: 332 GRLHAAYTGHNKKEAEQGAA 351 >gi|261878907|ref|ZP_06005334.1| ribonuclease III [Prevotella bergensis DSM 17361] gi|270334489|gb|EFA45275.1| ribonuclease III [Prevotella bergensis DSM 17361] Length = 366 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 114/224 (50%), Gaps = 15/224 (6%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63 +L + IG+ + S + AL H S++ + + ERLEFLGD IL + +++ HF Sbjct: 28 SLYRIIGFYPHDISHYKMALLHKSVTQHNKMGKRVNNERLEFLGDAILDAAVGDIVYRHF 87 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 KEG L+ + LV +T +++A+EL + I +S+ S+M + E+L+ Sbjct: 88 PGKKEGFLTNTRSKLVQRDTLNKLAKELGINDLI-LSNGCSSSHNSYMG---GNAFEALV 143 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFR 180 A+YLD G + F+ K + + K + K++L EW+ K + ++++ + Sbjct: 144 GAIYLDRGYDACMHFLKKRILAQMINIDKMAYKEVNFKSKLIEWSQ-KNHIKMDFEL-LK 201 Query: 181 SGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 D + P F+ V + G+A +G SK+ ++Q A E LKR Sbjct: 202 EDKDKNGSPTFSYRVMLEGIAGCEGTGFSKKESQQKACKETLKR 245 >gi|307448396|pdb|3O2R|B Chain B, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni gi|307448398|pdb|3O2R|D Chain D, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 144 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 78/131 (59%), Gaps = 5/131 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSA 66 LE+ + Y F +++LL ALTH S ++SY ERLEFLGD +L L++ LF+ F Sbjct: 5 LEQSLTYEFKDKNLLIHALTHKSFX---KKSYNNERLEFLGDAVLDLVVGEYLFHKFAKD 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I A+ Sbjct: 62 AEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAI 121 Query: 127 YLDGGIEVAGT 137 +L+ G E A T Sbjct: 122 HLEAGFEFAKT 132 >gi|330996547|ref|ZP_08320429.1| ribonuclease III [Paraprevotella xylaniphila YIT 11841] gi|329573103|gb|EGG54722.1| ribonuclease III [Paraprevotella xylaniphila YIT 11841] Length = 297 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 22/227 (9%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNH 62 YS+ K +G+ + E+AL H S S Q S+ ERLEFLGD IL ++ ++F H Sbjct: 21 YSSFYKILGFYPHHIQYYEQALHHKSSSIKKQGSWINNERLEFLGDAILDAVVGDIVFRH 80 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ + +V ET +++A E+ L I +SS S+M + E++ Sbjct: 81 FKGKHEGFLTNTRSKIVQRETLNKLAVEIGLDKLI-ISSTHSSTHNSYMC---GNAFEAM 136 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTF 179 + A+YLD G F+ K + + K + K++L EW + ++TF Sbjct: 137 VGAIYLDRGYSYCMRFIGKRIMTQLINIDKLAYKEVNFKSKLIEWGQKR-----RVEITF 191 Query: 180 ------RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + G + P FT + I G+ +G SK+ ++Q+AA + L Sbjct: 192 DLIDQAQEG-NSTPVFTTQITIEGVTCCKGRGYSKKESQQLAAKDTL 237 >gi|226305918|ref|YP_002765878.1| ribonuclease III [Rhodococcus erythropolis PR4] gi|226185035|dbj|BAH33139.1| probable ribonuclease III [Rhodococcus erythropolis PR4] Length = 257 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 101/211 (47%), Gaps = 14/211 (6%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LL ALTH S ++ + ERLEFLGD +LG+ ++ L+ EG+L+ S+ Sbjct: 30 GLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTENLYLSHPDKSEGDLAKIRASV 89 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVA 135 V+ ++VAR L + + + SI AD +ES++ A++L GI+ A Sbjct: 90 VNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADGMESILGAIHLQHGIDTA 149 Query: 136 -----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 F D + L +G D KT LQE P Y++T +GPDHD FT Sbjct: 150 RRVVLDLFDDLLTRAPLLGAG---LDWKTSLQELTAEHGAGVPVYEIT-ATGPDHDKEFT 205 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V IS G+ SK+ AEQ AA+ K Sbjct: 206 ATVLISDKPLGVGVGRSKKEAEQKAASSAWK 236 >gi|119509571|ref|ZP_01628718.1| ribonuclease III [Nodularia spumigena CCY9414] gi|119465760|gb|EAW46650.1| ribonuclease III [Nodularia spumigena CCY9414] Length = 226 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 7/211 (3%) Query: 17 FANRSLLEKALTHSS-ISHSYQESY-ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 F N LL++ALTH S ++ + E + ERLEFLGD +L + L+ + E E++ R Sbjct: 7 FQNEKLLQQALTHRSYVNENPGEKHNERLEFLGDALLTFISGEYLYTRYPEIAEDEMTRR 66 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL--DGGI 132 ++LV + ++ A E+ L +R+ +D ++ + ES++ A YL D I Sbjct: 67 RSALVDEKQLAKFAIEVGLDFKMRLGRGAIQDGGFQSPNLLSSAFESVVGAYYLDCDRNI 126 Query: 133 EVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFG-VTPEYKVTFRSGPDHDPRF 189 E + + +A+ + D+K QEW AKFG + P+Y G DH P + Sbjct: 127 EKIRPIIADLFNSVPQAIMEIRSNVDSKNRFQEWVQAKFGTLLPKYITERIGGQDHAPEY 186 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V + G K+ AE+ AA L Sbjct: 187 LAQVFVGEQVYGYGKARGKKEAEKQAAENAL 217 >gi|314923852|gb|EFS87683.1| ribonuclease III [Propionibacterium acnes HL001PA1] gi|314966091|gb|EFT10190.1| ribonuclease III [Propionibacterium acnes HL082PA2] gi|314981862|gb|EFT25955.1| ribonuclease III [Propionibacterium acnes HL110PA3] gi|315090788|gb|EFT62764.1| ribonuclease III [Propionibacterium acnes HL110PA4] gi|315094941|gb|EFT66917.1| ribonuclease III [Propionibacterium acnes HL060PA1] gi|327328032|gb|EGE69801.1| ribonuclease III [Propionibacterium acnes HL103PA1] Length = 265 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALTH S + + + ERLEFLGD IL + ++ L+ F EG+L+ +++V Sbjct: 53 LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 112 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + ++AR+L + I++ + TSI AD E+L+ A+ L G+ V Sbjct: 113 STVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPDVLRLV 172 Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + A +SG D KT LQE+ P Y++ SGPDH+ R+ + Sbjct: 173 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 230 Query: 197 GLAPAQGMDCSKRAAEQVAA 216 G A +K+ AEQ AA Sbjct: 231 GRLYAAYTGHNKKEAEQGAA 250 >gi|282854597|ref|ZP_06263932.1| ribonuclease III [Propionibacterium acnes J139] gi|282582179|gb|EFB87561.1| ribonuclease III [Propionibacterium acnes J139] Length = 246 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALTH S + + + ERLEFLGD IL + ++ L+ F EG+L+ +++V Sbjct: 34 LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 93 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + ++AR+L + I++ + TSI AD E+L+ A+ L G+ V Sbjct: 94 STVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPDVLRLV 153 Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + A +SG D KT LQE+ P Y++ SGPDH+ R+ + Sbjct: 154 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 211 Query: 197 GLAPAQGMDCSKRAAEQVAA 216 G A +K+ AEQ AA Sbjct: 212 GRLYAAYTGHNKKEAEQGAA 231 >gi|146298900|ref|YP_001193491.1| ribonuclease III [Flavobacterium johnsoniae UW101] gi|146153318|gb|ABQ04172.1| Ribonuclease III [Flavobacterium johnsoniae UW101] Length = 246 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 107/220 (48%), Gaps = 16/220 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLLF 60 + T++K +G+ N +KA TH S S+ E +YERLEFLGD +L +I+ LF Sbjct: 20 FDTIQKILGFQPINIEFYKKAFTHRS-SNKLDEAGHPINYERLEFLGDAMLSAVIAAHLF 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG L+ + +VS E +++ ++L+L F+ + + V F +I ++ E Sbjct: 79 NKAPNGDEGYLTKMRSKIVSREHLNELGKDLNLVRFV----ESKVPVQHFGENIHGNIFE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 SLI A+YLD G F+ K + A GK K+ + EW + + Y Sbjct: 135 SLIGAIYLDKGYSYCERFIQKRVITPYVDIARLEGKV-ISYKSLVIEWCQKEKRIF-HYD 192 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + +G D F V + I A+ SK+ AE+ A+ Sbjct: 193 IFEDNGIDGQRLFGVKLSIDDKVVARARATSKKKAEEKAS 232 >gi|332017989|gb|EGI58626.1| Ribonuclease 3 [Acromyrmex echinatior] Length = 1326 Score = 78.2 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T SI ++ S +RLEFLGD +L L++S L+ + Sbjct: 1036 KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKY 1095 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ +T + V +L + + + T +AD++E+ Sbjct: 1096 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGN----PKAELKTKDRADLLEAF 1151 Query: 123 IAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPE 174 + ALY+D G++ F D + + + + D K++LQ+ + P Sbjct: 1152 LGALYVDKGLKYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1211 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV GP + +TV V G A S + AE +A E L++ Sbjct: 1212 YKVIECKGPTNTRVYTVAVYFQGKRLATASGHSIQEAEMNSAKEALEK 1259 Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 9/113 (7%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 K T SSI+H+ ERLEFLGD ++ L S LF+ F +EG L+ ++V + Sbjct: 884 KTETESSIAHN-----ERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHL 938 Query: 85 SQVARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 + +A++L+L ++ + SDL D+ + A+ E+L+ +L+LDGGIEVA Sbjct: 939 AVLAKKLNLEEYMLYAHGSDLCHDL--ELRHAMANCFEALMGSLFLDGGIEVA 989 >gi|328723672|ref|XP_003247913.1| PREDICTED: ribonuclease 3-like [Acyrthosiphon pisum] Length = 1273 Score = 78.2 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 18/229 (7%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 + + E IG F + LL +A T S+ + S +RLEFLGD +L L+ S L+ + Sbjct: 964 KLTNFEDSIGIKFTHIRLLARAFTDRSVGFTNLTLGSNQRLEFLGDTVLQLIASDYLYKY 1023 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T S V +L + S+ ++ T +AD++E+ Sbjct: 1024 FPEHHEGHLSLLRSSLVNNRTQSVVCDDLGMVSYALYAN----PKAELKTKDRADLLEAF 1079 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR----ALKSGKFRRDAKTELQEWAHAKFGV------T 172 + ALY+D G+ F + + R LK D K++LQ+ V Sbjct: 1080 LGALYIDKGLTFCQAFCNVCFFPRLHDFILKQD--WNDPKSKLQQCCLTLRSVDGGEPDI 1137 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P YKV GP + ++TV V + +Q S + AE AA L+ Sbjct: 1138 PVYKVIECMGPTNGRKYTVAVYFKSVRLSQATGHSIQRAEMNAANSALE 1186 Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 24/152 (15%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F +S +E + H+ ERLEFLGD ++ + S LFN F +EG L+ Sbjct: 809 FGKKSEMESNIMHN----------ERLEFLGDAVVEFVSSIHLFNMFPDIEEGGLATFRA 858 Query: 77 SLVSAETCSQVARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 ++V + + +A+ L L F+ + SDL D S + A+ E+L+ AL+LDGGIEV Sbjct: 859 AIVQNQHLAVLAKTLKLDDFMLYAHGSDLCHD--SELKHAMANCFEALMGALFLDGGIEV 916 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 A K F RD+ L W + Sbjct: 917 ADRVFGK----------TFYRDSPEYLDIWVN 938 >gi|254442236|ref|ZP_05055712.1| ribonuclease III [Verrucomicrobiae bacterium DG1235] gi|198256544|gb|EDY80852.1| ribonuclease III [Verrucomicrobiae bacterium DG1235] Length = 263 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 101/214 (47%), Gaps = 6/214 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE ++GY F + LL ++LTH S + ++ +RLEFLGD ++ L+++ L+ F S Sbjct: 39 LENKLGYTFKTKGLLHQSLTHPSFLLNTKDQLKNNQRLEFLGDSVIQLVLTEKLYEKFPS 98 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG+L+ + + + +AREL L ++ + R + S D E+LI A Sbjct: 99 LREGKLTSIRSGYARGDYMAGIARELKLGDYLILKPKDRNAGVAENDSALGDAFEALIGA 158 Query: 126 LYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTP-EYKVTFRSG 182 +YLD E + + + + A + + K +LQE G Y+ ++G Sbjct: 159 IYLDSDFETSRKIILELYNYLDTAPTAKGVIANPKGKLQELIQPVHGNNALRYETIAQTG 218 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 H+ F V V +G +K+ A + AA Sbjct: 219 EAHEREFEVAVFCHDEQLGKGAGRTKKEAAEKAA 252 >gi|319640160|ref|ZP_07994887.1| ribonuclease 3 [Bacteroides sp. 3_1_40A] gi|317388438|gb|EFV69290.1| ribonuclease 3 [Bacteroides sp. 3_1_40A] Length = 308 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 113/219 (51%), Gaps = 13/219 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y K +G+ + S+ E+AL H S+S ++ + ERLEFLGD IL +++ +++ Sbjct: 20 YLRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIVYK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F+ +EG L+ + +V ET +++A E+ L I+ ++ + S+M + E+ Sbjct: 80 RFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTAR-QSSHNSYMC---GNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKV 177 L+ A+YLD G F++ + K R + K++L EW+ +F VT E + Sbjct: 136 LVGAIYLDRGYRACKYFMEHRIIGPYINLEKISRKEVNFKSKLIEWSQKNRFEVTFEL-I 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T + P F V + G++ +G SK+ ++Q+AA Sbjct: 195 TQSHDQGYSPTFESEVLVEGISGGKGTGYSKKESQQMAA 233 >gi|155370768|ref|YP_001426302.1| hypothetical protein FR483_N670L [Paramecium bursaria Chlorella virus FR483] gi|155122358|gb|ABT14226.1| hypothetical protein MT325_M672L [Paramecium bursaria chlorella virus MT325] gi|155124088|gb|ABT15955.1| hypothetical protein FR483_N670L [Paramecium bursaria Chlorella virus FR483] Length = 266 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 3/214 (1%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +G + L A +++ I E++ERLEFLGD +LG LI+ L++ F EG L+ Sbjct: 49 VGMPVGDFGLYVTAFSYNPILEG-GETFERLEFLGDSVLGFLIAKYLYDTFPGKNEGILT 107 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 VS + S++A L L ++I +S + I D E+LI A+YLDGGI Sbjct: 108 RIRVKFVSGKFLSKLALNLGLHNYIIMSQKGLYRGWNTNPKILEDAFEALIGAIYLDGGI 167 Query: 133 EVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 A F + A ++ + K L + PE+ + F G + F V Sbjct: 168 NAAKQFFMTTLARHANIQELLIDSNHKDRLAKHCRRLSLGRPEFVIQFERG-GANSLFIV 226 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 V + G A+G +++ AEQ A + L GI Sbjct: 227 GVHVDGNKFAEGSGTTRKDAEQDACNKALLHMGI 260 >gi|315225570|ref|ZP_07867380.1| ribonuclease III [Capnocytophaga ochracea F0287] gi|314944514|gb|EFS96553.1| ribonuclease III [Capnocytophaga ochracea F0287] Length = 252 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 108/225 (48%), Gaps = 27/225 (12%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 Y+ +++ +G+ N S +A TH S + ++SYERLEFLGD ILG +I+ +F + Sbjct: 23 YTKIKELLGFPPKNLSYYSEAFTHPSYQFQKATRKSYERLEFLGDAILGAVIADYIFTNA 82 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ + +V +Q+ +++ L F+R R+ +I ++ E+LI Sbjct: 83 PEQDEGYLTKMRSKIVERRNLNQLGKDMRLLDFLRTKLTPRQ----LGNNITGNLFEALI 138 Query: 124 AALYLDGGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 A+YLD G + F+++ Y + L+ GK K+ L EW ++K+ Sbjct: 139 GAIYLDRGYKACFKFIERELILPYINIKNLE-GKV-ISHKSLLIEWCQ-------KHKLD 189 Query: 179 FRSGPDHDPR-------FTVVVEISGLAPAQGMDCSKRAAEQVAA 216 F + D F V + G + + SK+ AE++AA Sbjct: 190 FAFEAEEDIEDCSETKFFVAKVHVQGFSVTRARSTSKKKAEEIAA 234 >gi|269101846|ref|ZP_06154543.1| ribonuclease III [Photobacterium damselae subsp. damselae CIP 102761] gi|268161744|gb|EEZ40240.1| ribonuclease III [Photobacterium damselae subsp. damselae CIP 102761] Length = 178 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 3/162 (1%) Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 + +I+ L++ F + EG++S +LV +T +++ RE +L + + K Sbjct: 1 MSFVIADDLYHRFPNVDEGDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFR 60 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAK 168 SI AD VE++I A+YLD IE V +++ R ++ G ++D KT LQE + Sbjct: 61 RDSILADCVEAIIGAIYLDSDIEKVRNIVLDWYQSRLETIQPGVNQKDPKTRLQECLQGR 120 Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKR 209 P Y VT G H+ FTV E++GL P G S+R Sbjct: 121 RLPLPAYTVTKVHGEAHNQEFTVQCEVTGLDKPVVGKGGSRR 162 >gi|308177247|ref|YP_003916653.1| ribonuclease III [Arthrobacter arilaitensis Re117] gi|307744710|emb|CBT75682.1| ribonuclease III [Arthrobacter arilaitensis Re117] Length = 225 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 69/214 (32%), Positives = 106/214 (49%), Gaps = 14/214 (6%) Query: 11 KRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 KR+G + + A TH S S H + ERLEFLGD ILG ++ L+ F E Sbjct: 2 KRLGINIDSETF-RLAFTHRSYSYEHGGIPTNERLEFLGDSILGFCVAEYLYASFPDLPE 60 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ R ++VS + +AR+L++ + + + + +SI AD +E+++ A YL Sbjct: 61 GDLAKRRAAIVSTRALAMIARDLEVGEHLFLGRGESQSNGANKSSILADTMEAILGATYL 120 Query: 129 DGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQ-EWAHAKFGVTPEYKVTFRSG 182 G++ A V ++ R L + D KT +Q E A K G Y+VT SG Sbjct: 121 VQGMDEARALVLRFVTPLLEDPRLLGA---TTDWKTVIQEEVASQKLGEMC-YEVT-GSG 175 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 PDH + + I + +G SK+ AEQ AA Sbjct: 176 PDHARTYVAKLCIGAKSYGEGHGPSKKEAEQEAA 209 >gi|313886831|ref|ZP_07820536.1| ribonuclease III [Porphyromonas asaccharolytica PR426713P-I] gi|312923721|gb|EFR34525.1| ribonuclease III [Porphyromonas asaccharolytica PR426713P-I] Length = 259 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 104/224 (46%), Gaps = 16/224 (7%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNH 62 +TL RIG L A+ H S S + + ERLEFLGD +L I T L+ Sbjct: 29 TTLFDRIGILPVRTDLYLLAMRHRSCSIVGEGGEKLNNERLEFLGDAVLEASICTYLYQL 88 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFMTSIQADVVES 121 + EGELS +SLVS ++V R L L + I V S L V I + VE+ Sbjct: 89 HPTWDEGELSKCKSSLVSRPVNNEVGRRLHLERYIIMVPSALDNSV-----DIYGNTVEA 143 Query: 122 LIAALYLDGGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 LI A+YLD G FV + ++ + ++ K+EL EW K ++ E+++ Sbjct: 144 LIGAIYLDQGYARTQEFVRDFILPTYRDMQAHTVASIQNYKSELIEWVQ-KHHLSHEFRL 202 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 HD F V I G +G SK+ A+Q AA + LK Sbjct: 203 EEHEMAPHD-HFIYSVWIDGKPVGRGAGSSKKRAQQEAARDTLK 245 >gi|256820149|ref|YP_003141428.1| ribonuclease III [Capnocytophaga ochracea DSM 7271] gi|256581732|gb|ACU92867.1| ribonuclease III [Capnocytophaga ochracea DSM 7271] Length = 252 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 108/225 (48%), Gaps = 27/225 (12%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 Y+ +++ +G+ N S +A TH S + ++SYERLEFLGD ILG +I+ +F + Sbjct: 23 YTKIKELLGFPPKNLSYYSEAFTHPSYQFQKATRKSYERLEFLGDAILGAVIADYIFTNA 82 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ + +V +Q+ +++ L F+R R+ +I ++ E+LI Sbjct: 83 PEQDEGYLTKMRSKIVERRNLNQLGKDMRLLDFLRTKLTPRQ----LGNNITGNLFEALI 138 Query: 124 AALYLDGGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 A+YLD G + F+++ Y + L+ GK K+ L EW ++K+ Sbjct: 139 GAIYLDRGYKACFKFIERELILPYINIKNLE-GKV-ISHKSLLIEWCQ-------KHKLD 189 Query: 179 FRSGPDHDPR-------FTVVVEISGLAPAQGMDCSKRAAEQVAA 216 F + D F V + G + + SK+ AE++AA Sbjct: 190 FAFEAEEDIEDCSETKFFVAKVHVQGFSVTRARSTSKKKAEEIAA 234 >gi|291456081|ref|ZP_06595471.1| ribonuclease III [Bifidobacterium breve DSM 20213] gi|291382490|gb|EFE90008.1| ribonuclease III [Bifidobacterium breve DSM 20213] Length = 247 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 101/207 (48%), Gaps = 15/207 (7%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH + +YERLEFLGD +L L+ + LF EG+L+ V Sbjct: 32 LLVQALTHRSFSHEHPGVSNYERLEFLGDAVLELVTTETLFTIHPDMNEGQLAKMRAKAV 91 Query: 80 SAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134 S + S +A+ +L + +I + + + SI D+VESLI A +L+ GI+ V Sbjct: 92 SEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLIGATFLEHGIDEARKV 151 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 +D + A + D KT L AH P Y + SGP++ FT V Sbjct: 152 IHRLIDDTLAEVATEGPAL--DWKTSLTVKAHHLGKAEPVYHMEV-SGPEYAQIFTAKVT 208 Query: 195 ISGLAP---AQGMDCSKRAAEQVAAAE 218 + G P G SKR A Q+AAAE Sbjct: 209 L-GDNPEIIGTGKGSSKRKA-QLAAAE 233 >gi|255016282|ref|ZP_05288408.1| ribonuclease III [Bacteroides sp. 2_1_7] Length = 256 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 112/224 (50%), Gaps = 15/224 (6%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63 +L K +G+ N + E+AL H S S + + ERLEFLGD IL ++ +++ + Sbjct: 2 SLSKILGFYPDNLQIYEQALLHKSSSVETGDGKWLNNERLEFLGDGILDAAVADIVYKRY 61 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + +EG L+ + +V ET ++VA +L L + S+ + S + + +E+LI Sbjct: 62 PNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYST----KINSHNNHMYGNALEALI 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFR 180 A+YLD G +V F+ ++ + R + K+ L EW+ K ++ + + Sbjct: 118 GAIYLDQGYDVCYKFIRDVMIEKYIDVDMLVRKEINFKSNLIEWSQ-KNKISISFDL-IE 175 Query: 181 SGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 S DHD P F +++ G G+ SK+ ++Q A+ +KR Sbjct: 176 SFTDHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKR 219 >gi|237711457|ref|ZP_04541938.1| ribonuclease III [Bacteroides sp. 9_1_42FAA] gi|229454152|gb|EEO59873.1| ribonuclease III [Bacteroides sp. 9_1_42FAA] Length = 283 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 112/212 (52%), Gaps = 13/212 (6%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ + S+ E+AL H S+S ++ + ERLEFLGD IL +++ +++ F+ +E Sbjct: 2 LGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIVYKRFEGKRE 61 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V ET +++A E+ L I+ ++ + S+M + E+L+ A+YL Sbjct: 62 GFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTAR-QSSHNSYMC---GNAFEALVGAIYL 117 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184 D G F++ + K R + K++L EW+ +F VT E +T Sbjct: 118 DRGYRACKYFMEHRIIGSYINLEKISRKEVNFKSKLIEWSQKNRFEVTFEL-ITQSHDQG 176 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 ++P F V + G++ +G SK+ ++Q+AA Sbjct: 177 YNPTFESEVLVEGISGGKGTGYSKKESQQMAA 208 >gi|119487905|ref|ZP_01621402.1| Ribonuclease III [Lyngbya sp. PCC 8106] gi|119455481|gb|EAW36619.1| Ribonuclease III [Lyngbya sp. PCC 8106] Length = 242 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 8/186 (4%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL+ ALTH SIS + +YE+LEF+GD ++ L S L+ + GE S + LVS Sbjct: 31 LLDLALTHPSIS--MEANYEQLEFVGDAVVRLAASEFLWETYPKQPVGEFSAIRSVLVSD 88 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFVD 140 +++A + ++ + +D + + AD +E+++AA YL +++ +++ Sbjct: 89 RFLAEIAESYGMGRYLLIGGSAAQDRMGEQSRL-ADCLEAILAAFYLSTHNLQLIHPWLE 147 Query: 141 KYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISG 197 ++++ A + R++ K LQEW + + V PEY VT SGP D R+T V G Sbjct: 148 PHFQKGATQILRDPARQNYKAALQEWTQSHYKVLPEYTVT-ESGPMGDEERYTAQVWFQG 206 Query: 198 LAPAQG 203 +G Sbjct: 207 KPVGEG 212 >gi|15229816|ref|NP_189978.1| ribonuclease III family protein [Arabidopsis thaliana] gi|7594553|emb|CAB88120.1| putative protein [Arabidopsis thaliana] gi|94450858|gb|ABF19799.1| dicer-like 3 [Arabidopsis thaliana] gi|332644321|gb|AEE77842.1| protein dicer-like 3 [Arabidopsis thaliana] Length = 1531 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 26/155 (16%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++I + F+ + LL++A+THSS+ SY SYERLEFLGD +L LI+ LFN ++ Sbjct: 1152 LERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFNTYEQTGP 1209 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ------------ 115 GE++ ++ V+ E +QVA + +L + + R ++ L + ++ S Q Sbjct: 1210 GEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPSI 1269 Query: 116 ------ADVVESLIAALYLDGGIEVAGTFVDKYWK 144 DVVES+ AL +D ++ +D+ W+ Sbjct: 1270 QGPKALGDVVESIAGALLIDTRLD-----LDQVWR 1299 Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 ++ ++ S+LE A+T + S+ S ERLE LGD +L + S LF + EG+LS Sbjct: 949 NFSISSTSILE-AVTTLTCPESF--SMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSR 1005 Query: 74 RFNSLVSAETCSQVARELDLASFIR 98 + S++S ++ L +IR Sbjct: 1006 QRQSIISNSNLHRLTTSRKLQGYIR 1030 >gi|307208065|gb|EFN85596.1| Ribonuclease 3 [Harpegnathos saltator] Length = 1328 Score = 78.2 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T SI ++ S +RLEFLGD +L L++S L+ Sbjct: 1041 KLTKFEESIGIKFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1100 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ +T + V +L + + + T +AD++E+ Sbjct: 1101 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGN----PKAELKTKDRADLLEAF 1156 Query: 123 IAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPE 174 + ALY+D G + F D + + + + D K++LQ+ + P Sbjct: 1157 LGALYVDKGFKYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1216 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV GP + +TV V G A+ S + AE +A E L++ Sbjct: 1217 YKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEK 1264 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 41/110 (37%), Positives = 66/110 (60%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T SSI+H+ ERLEFLGD ++ L S LF+ F +EG L+ ++V + + + Sbjct: 892 TESSIAHN-----ERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVL 946 Query: 88 ARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L ++ + SDL D+ + A+ E+L+ +L+LDGGIEVA Sbjct: 947 AKKLNLEEYMLYAHGSDLCHDL--ELRHAMANCFEALMGSLFLDGGIEVA 994 >gi|238479965|ref|NP_001154663.1| ribonuclease III family protein [Arabidopsis thaliana] gi|322518661|sp|Q9LXW7|DCL3_ARATH RecName: Full=Endoribonuclease Dicer homolog 3; AltName: Full=Dicer-like protein 3; Short=AtDCL3 gi|332644322|gb|AEE77843.1| protein dicer-like 3 [Arabidopsis thaliana] Length = 1580 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 26/155 (16%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++I + F+ + LL++A+THSS+ SY SYERLEFLGD +L LI+ LFN ++ Sbjct: 1201 LERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFNTYEQTGP 1258 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ------------ 115 GE++ ++ V+ E +QVA + +L + + R ++ L + ++ S Q Sbjct: 1259 GEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPSI 1318 Query: 116 ------ADVVESLIAALYLDGGIEVAGTFVDKYWK 144 DVVES+ AL +D ++ +D+ W+ Sbjct: 1319 QGPKALGDVVESIAGALLIDTRLD-----LDQVWR 1348 Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 ++ ++ S+LE A+T + S+ S ERLE LGD +L + S LF + EG+LS Sbjct: 998 NFSISSTSILE-AVTTLTCPESF--SMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSR 1054 Query: 74 RFNSLVSAETCSQVARELDLASFIR 98 + S++S ++ L +IR Sbjct: 1055 QRQSIISNSNLHRLTTSRKLQGYIR 1079 >gi|332644323|gb|AEE77844.1| protein dicer-like 3 [Arabidopsis thaliana] Length = 1570 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 26/155 (16%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++I + F+ + LL++A+THSS+ SY SYERLEFLGD +L LI+ LFN ++ Sbjct: 1191 LERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFNTYEQTGP 1248 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ------------ 115 GE++ ++ V+ E +QVA + +L + + R ++ L + ++ S Q Sbjct: 1249 GEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPSI 1308 Query: 116 ------ADVVESLIAALYLDGGIEVAGTFVDKYWK 144 DVVES+ AL +D ++ +D+ W+ Sbjct: 1309 QGPKALGDVVESIAGALLIDTRLD-----LDQVWR 1338 Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 ++ ++ S+LE A+T + S+ S ERLE LGD +L + S LF + EG+LS Sbjct: 988 NFSISSTSILE-AVTTLTCPESF--SMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSR 1044 Query: 74 RFNSLVSAETCSQVARELDLASFIR 98 + S++S ++ L +IR Sbjct: 1045 QRQSIISNSNLHRLTTSRKLQGYIR 1069 >gi|242078881|ref|XP_002444209.1| hypothetical protein SORBIDRAFT_07g015020 [Sorghum bicolor] gi|241940559|gb|EES13704.1| hypothetical protein SORBIDRAFT_07g015020 [Sorghum bicolor] Length = 291 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 19/148 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 MSA + +E +GY FA++SL+E ALTH S Y+ ++YERLE+LGD +L L+S Sbjct: 22 MSAEDVAAIEAVLGYEFADKSLVELALTHGSFYFPYRPGDTYERLEYLGDGVLTCLMSRE 81 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ-- 115 +F ++ + G L+ + V E ++VA + L F+R + L+ +C F+ ++ Sbjct: 82 VFRNYRTLPPGPLTRLRAANVDTEKLARVAVDRGLHRFLRHKAPKLQDQICLFIEEMRKY 141 Query: 116 --------------ADVVESLIAALYLD 129 D+VESLI A+Y D Sbjct: 142 PVHSNGLLDPPKVLCDIVESLIGAIYWD 169 >gi|238479963|ref|NP_001154662.1| ribonuclease III family protein [Arabidopsis thaliana] Length = 1577 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 26/155 (16%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++I + F+ + LL++A+THSS+ SY SYERLEFLGD +L LI+ LFN ++ Sbjct: 1198 LERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFNTYEQTGP 1255 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ------------ 115 GE++ ++ V+ E +QVA + +L + + R ++ L + ++ S Q Sbjct: 1256 GEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPSI 1315 Query: 116 ------ADVVESLIAALYLDGGIEVAGTFVDKYWK 144 DVVES+ AL +D ++ +D+ W+ Sbjct: 1316 QGPKALGDVVESIAGALLIDTRLD-----LDQVWR 1345 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 ++ ++ S+LE A+T + S+ S ERLE LGD +L + S LF + EG+LS Sbjct: 995 NFSISSTSILE-AVTTLTCPESF--SMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSR 1051 Query: 74 RFNSLVSAETCSQVARELDLASFIR 98 + S++S ++ L +IR Sbjct: 1052 QRQSIISNSNLHRLTTSRKLQGYIR 1076 >gi|314954310|gb|EFS98716.1| ribonuclease III [Propionibacterium acnes HL027PA1] Length = 265 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 98/200 (49%), Gaps = 7/200 (3%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALTH S + + + ERLEFLGD IL + ++ L+ F EG+L+ +++V Sbjct: 53 LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 112 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + Q+AR+L + I++ + TSI AD E+L+ A+ L G+ V Sbjct: 113 STVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPDVLRLV 172 Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + A +SG D KT LQE+ P Y++ GPDH+ R+ + Sbjct: 173 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-FGPDHNRRYCARANVD 230 Query: 197 GLAPAQGMDCSKRAAEQVAA 216 G A +K+ AEQ AA Sbjct: 231 GRLHAAYTGHNKKEAEQGAA 250 >gi|283782836|ref|YP_003373590.1| ribonuclease III [Gardnerella vaginalis 409-05] gi|283442034|gb|ADB14500.1| ribonuclease III [Gardnerella vaginalis 409-05] Length = 242 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 104/212 (49%), Gaps = 21/212 (9%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH + +YERLEFLGD +L L+ + LF+ EG+L+ V Sbjct: 29 LLVEALTHRSFSHEHPGTRNYERLEFLGDAVLELVSTETLFSAHPDMTEGQLAKMRAKAV 88 Query: 80 SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 S S VARE L + ++I + + + SI D+VE+LI A +++ GI+ A Sbjct: 89 SEWALSAVAREKLHVGAYILLGRGEMEQGGNNKDSILCDIVEALIGATFVEHGIDEARRV 148 Query: 139 VDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV-- 193 V + L G D KT L AH PEY++ SGP++ P F Sbjct: 149 VHRLIDDTLAEVLTEGPA-LDWKTSLTVKAHDMGLEDPEYRMAV-SGPEYAPVFEARAVL 206 Query: 194 ------EISGLAPAQGMDCSKRAAEQVAAAEV 219 E+ G+ G SKR A Q+AAAE+ Sbjct: 207 AHKDGDEVLGV----GSGSSKRKA-QLAAAEI 233 >gi|282901362|ref|ZP_06309287.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505] gi|281193641|gb|EFA68613.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505] Length = 228 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 109/223 (48%), Gaps = 13/223 (5%) Query: 17 FANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F N L+ +ALTH S ++ + ERLEFLGD IL + L++ + E EL+ Sbjct: 7 FKNEKLVRQALTHRSYANENPTEGDHNERLEFLGDAILNFISGEYLYSRYPQKGEDELTR 66 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG-- 131 R ++LV + ++ A E+ L +R+ +D ++ + E++I A YLD Sbjct: 67 RRSALVEEKQLAKFALEVGLNLKMRLGKGTIQDGGYQNPNLLSSTFEAVIGAYYLDNNCN 126 Query: 132 ---IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTFRSGPDHDP 187 ++VA + + Q ++S ++ D+K QEW K P+YK G H P Sbjct: 127 IEAVKVAVEPLFDFVSQHTIES-RYNVDSKNRFQEWVQKKLCANPPKYKTQQIGGSPHLP 185 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKREGIWT 227 F V + G QG +K+ AE+ AA + L+REG+++ Sbjct: 186 EFASRVLVDGKEFGQGKGKNKKDAEKAAAEDAIARLQREGLFS 228 >gi|298253314|ref|ZP_06977106.1| dsRNA-specific ribonuclease [Gardnerella vaginalis 5-1] gi|297532709|gb|EFH71595.1| dsRNA-specific ribonuclease [Gardnerella vaginalis 5-1] Length = 276 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 104/212 (49%), Gaps = 21/212 (9%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH + +YERLEFLGD +L L+ + LF+ EG+L+ V Sbjct: 63 LLVEALTHRSFSHEHPGTRNYERLEFLGDAVLELVSTETLFSAHPDMTEGQLAKMRAKAV 122 Query: 80 SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 S S VARE L + ++I + + + SI D+VE+LI A +++ GI+ A Sbjct: 123 SEWALSAVAREKLHVGAYILLGRGEMEQGGNNKDSILCDIVEALIGATFVEHGIDEARRV 182 Query: 139 VDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV-- 193 V + L G D KT L AH PEY++ SGP++ P F Sbjct: 183 VHRLIDDTLAEVLTEGPA-LDWKTSLTVKAHDMGLEDPEYRMAV-SGPEYAPVFEARAVL 240 Query: 194 ------EISGLAPAQGMDCSKRAAEQVAAAEV 219 E+ G+ G SKR A Q+AAAE+ Sbjct: 241 ARKDGDEVLGV----GSGSSKRKA-QLAAAEI 267 >gi|295397856|ref|ZP_06807919.1| ribonuclease III [Aerococcus viridans ATCC 11563] gi|294973901|gb|EFG49665.1| ribonuclease III [Aerococcus viridans ATCC 11563] Length = 247 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 7/193 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L R G + + +A THSS + Q + ER+EFLGD +L L++S L+ ++ Sbjct: 26 LADRFGLEIQDETHYIEAFTHSSYVNENQNLALQDNERIEFLGDAVLELVVSNYLYRNYP 85 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG +S +V E+ ++ E F+R+ + S+ D+ ES++ Sbjct: 86 EMDEGRMSSLRALIVREESLAKRCVECGFDQFVRLGNGEEASNGRKRPSLLCDLFESVLG 145 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G++ + + +K+G F R DAKT LQE + + Y++ SG Sbjct: 146 AIYLDLGLDAIEHLMSLTIYPK-IKNGDFTRLSDAKTALQEELQKEGAIQLAYELESESG 204 Query: 183 PDHDPRFTVVVEI 195 P H F V V + Sbjct: 205 PAHSKEFHVAVRL 217 >gi|297815500|ref|XP_002875633.1| hypothetical protein ARALYDRAFT_484824 [Arabidopsis lyrata subsp. lyrata] gi|297321471|gb|EFH51892.1| hypothetical protein ARALYDRAFT_484824 [Arabidopsis lyrata subsp. lyrata] Length = 1521 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 85/155 (54%), Gaps = 26/155 (16%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE++I + F+ + LL++A+THSS+ SY SYERLEFLGD +L LI+ LFN ++ Sbjct: 1142 LERKIQHEFSAKFLLKEAITHSSVHESY--SYERLEFLGDSVLDFLITRHLFNTYEQTGP 1199 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ------------ 115 GE++ ++ V+ E +QVA + +L + R ++ L + ++ S Q Sbjct: 1200 GEMTDLRSACVNNENFAQVAVKNNLHIHLQRCATVLENQINEYLMSFQKPDETGRSIPSI 1259 Query: 116 ------ADVVESLIAALYLDGGIEVAGTFVDKYWK 144 DVVES+ AL +D ++ +D+ W+ Sbjct: 1260 QGPKALGDVVESIAGALLIDTRLD-----LDQVWR 1289 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 ++ ++ S+LE A+T + ++ S ERLE LGD +L + S LF + EG+LS Sbjct: 939 NFSISSTSILE-AVTTLTCPEAF--SMERLELLGDSVLKYVASCYLFLKYPDKDEGQLSR 995 Query: 74 RFNSLVSAETCSQVARELDLASFIR 98 + S++S ++A L +IR Sbjct: 996 QRQSIISNSNLHRLATNRKLQGYIR 1020 >gi|297242888|ref|ZP_06926826.1| dsRNA-specific ribonuclease [Gardnerella vaginalis AMD] gi|296889099|gb|EFH27833.1| dsRNA-specific ribonuclease [Gardnerella vaginalis AMD] Length = 273 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 104/212 (49%), Gaps = 21/212 (9%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH + +YERLEFLGD +L L+ + LF+ EG+L+ V Sbjct: 60 LLVEALTHRSFSHEHPGTRNYERLEFLGDAVLELVSTETLFSAHPDMTEGQLAKMRAKAV 119 Query: 80 SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 S S VARE L + ++I + + + SI D+VE+LI A +++ GI+ A Sbjct: 120 SEWALSAVAREKLHVGAYILLGRGEMEQGGNNKDSILCDIVEALIGATFVEHGIDEARRV 179 Query: 139 VDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV-- 193 V + L G D KT L AH PEY++ SGP++ P F Sbjct: 180 VHRLIDDTLAEVLTEGPA-LDWKTSLTVKAHDMGLEDPEYRMAV-SGPEYAPVFEARAVL 237 Query: 194 ------EISGLAPAQGMDCSKRAAEQVAAAEV 219 E+ G+ G SKR A Q+AAAE+ Sbjct: 238 AHKDGDEVLGV----GSGSSKRKA-QLAAAEI 264 >gi|294155354|ref|YP_003559738.1| ribonuclease III [Mycoplasma crocodyli MP145] gi|291600141|gb|ADE19637.1| ribonuclease III [Mycoplasma crocodyli MP145] Length = 223 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 106/213 (49%), Gaps = 20/213 (9%) Query: 19 NRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 N + +A+THSS S + YERLEFLGD ++ ++S+ LF D +G+++ Sbjct: 20 NTKIYLQAITHSSFFSSSNKKNSYERLEFLGDSVIQFVVSSELFK-MDDLNQGKMTELRA 78 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +V AET + ++ + L ++ + ++ T IQ DV E+++ A+Y+D G+++A Sbjct: 79 KVVRAETLASISIAIGLIDILKTAPGGSQETIKNSTKIQCDVFEAIVGAIYVDQGLDIAY 138 Query: 137 TFVDKYWKQRALKSGKF-RRDAKTELQEW------AHAKFGVTPEYKVTFRSGPDHDPRF 189 FV K+ KQ + + +D K+ LQE+ + K+ V F++ H+ Sbjct: 139 NFVFKFIKQYINGARQVENKDPKSRLQEYFQNFSKENIKYNVNQLPNKIFQARAIHE--- 195 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G G SK+ AE AA + LK+ Sbjct: 196 -------GSVYGMGQGYSKKEAEIEAAIDALKK 221 >gi|158297080|ref|XP_555381.3| AGAP008087-PA [Anopheles gambiae str. PEST] gi|157015023|gb|EAL39656.3| AGAP008087-PA [Anopheles gambiae str. PEST] Length = 1404 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 112/225 (49%), Gaps = 18/225 (8%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 E IG F + LL +A T SI + S +RLEFLGD +L L+ S L+ HF Sbjct: 953 FEDSIGVQFNHIRLLARAFTDRSIGFTNLTLGSNQRLEFLGDTVLQLICSEYLYRHFPEH 1012 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG LS+ +SLV+ T + V +L + + V S+ + D+ T +AD++E+ + AL Sbjct: 1013 HEGHLSLLRSSLVNNRTQAVVCDDLGMTQYA-VYSNPKADL---KTKDRADLLEAFLGAL 1068 Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE---YKVT 178 Y+D G+E F V + + + + D K++LQ+ G P+ YKV Sbjct: 1069 YVDKGLEYCEMFCHVCLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPVYKVI 1128 Query: 179 FRSGPDHDPRFTVVVEISG--LAPAQGMDCSKRAAEQVAAAEVLK 221 +GP + ++V V G LA A G S + AE AA + L+ Sbjct: 1129 ECTGPTNTRVYSVAVYFRGKRLACADGH--SIQQAEMNAAKQALE 1171 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S+I+H+ ERLEFLGD ++ + S LF+ F +EG L+ ++V + + + Sbjct: 800 TDSNITHN-----ERLEFLGDAVVEFITSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVL 854 Query: 88 ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVA 135 A++L L F+ + D+C + A+ E+L+ AL LDGGIEVA Sbjct: 855 AKKLHLEEFMLYAHG--SDLCHELELRHALANCFEALMGALLLDGGIEVA 902 >gi|9632031|ref|NP_048820.1| hypothetical protein PBCV1_A464R [Paramecium bursaria Chlorella virus 1] gi|2500556|sp|Q98514|A464_PBCV1 RecName: Full=Putative protein A464R gi|1620135|gb|AAC96831.1| similar to Bacillus ribonuclease III, corresponds to Swiss-Prot Accession Number P51833 [Paramecium bursaria Chlorella virus 1] Length = 275 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 31/232 (13%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E IG + S + A ++++I + +YER+EF+GD +LG +I+ L+++F E Sbjct: 54 VEYLIGMPIIDFSYYKTAFSYNAIVEG-EATYERMEFVGDSVLGFIIARYLYDNFPGKDE 112 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS VS + S +A + L +++ + + I DV E+L+ A+Y Sbjct: 113 GFLSRLRTKFVSGKFLSSIALRMGLHNYVIMHQKGLYRGWNTNPRILEDVFEALMGAIYF 172 Query: 129 DGGIEVAGTF---------------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 D GI A F +D +K R LK + K EL P Sbjct: 173 DLGINAAKQFFMTTLAKYADMQSLMLDTNYKDRLLKHTR-----KVELPR---------P 218 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 E+ F G +P F V V I+G + G S++ AEQ A+ L G+ Sbjct: 219 EFVSVFEKG-GANPSFIVDVVINGQKISTGTGKSRKDAEQNASKIALHTMGV 269 >gi|195119378|ref|XP_002004208.1| GI19789 [Drosophila mojavensis] gi|193909276|gb|EDW08143.1| GI19789 [Drosophila mojavensis] Length = 1297 Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 14/225 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E IG F + LL +A T SI +H S +RLEFLGD +L L+ S L+ HF Sbjct: 936 TRFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS+ +SLV+ T + V +L + F V ++ + D+ T +AD++E+ + Sbjct: 996 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKFA-VYANPKADL---KTKDRADLLEAFLG 1051 Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEYK 176 ALY+D G+ F V + + + + D K++LQ+ + P YK Sbjct: 1052 ALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1111 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V SGP + + V V A S + AE AA + L+ Sbjct: 1112 VVEASGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALE 1156 Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S+I+H+ ERLEFLGD ++ L S LF F +EG L+ ++V + + + Sbjct: 785 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 839 Query: 88 ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144 A++L L F+ + D+C + A+ E+L+ AL LDGGI+VA F D ++ Sbjct: 840 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 897 Query: 145 Q 145 Q Sbjct: 898 Q 898 >gi|88801614|ref|ZP_01117142.1| putative ribonuclease III [Polaribacter irgensii 23-P] gi|88782272|gb|EAR13449.1| putative ribonuclease III [Polaribacter irgensii 23-P] Length = 245 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 106/219 (48%), Gaps = 14/219 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L+K + ++ + + +KA TH S+ ++ +YERLEFLGD ILG +IS L+ Sbjct: 22 LKKLLKFSPTSINKYKKAFTHRSVQMIDRKGIPINYERLEFLGDSILGAVISAYLYKEAP 81 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +VS E +++ ++L+L F++ + D + +I ++ E+LI Sbjct: 82 KGSEGYLTQMRSKIVSREHLNELGKDLNLIRFVKSNIDQ----ANVGDNIHGNIFEALIG 137 Query: 125 ALYLDGGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 A+YLD G F+ + + A GK K + EW K + Sbjct: 138 AIYLDKGFNFCQKFIHQNVIAPYVDIAKLEGKI-TSYKGLIIEWCQ-KQKKRYAFDAYED 195 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 SG + F+V + I G A+G SK+ AE+ A+ V Sbjct: 196 SGNETTKHFSVKISIDGQQIAKGRATSKKKAEEQASKRV 234 >gi|314978880|gb|EFT22974.1| ribonuclease III [Propionibacterium acnes HL072PA2] gi|315089369|gb|EFT61345.1| ribonuclease III [Propionibacterium acnes HL072PA1] Length = 265 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 98/200 (49%), Gaps = 7/200 (3%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALTH S + + + ERLEFLGD IL + ++ L+ F EG+L+ +++V Sbjct: 53 LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 112 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + +AR+L + I++ + TSI AD E+L+ A+ L G+ V Sbjct: 113 STVSLGLLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPDVLRLV 172 Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + A +SG D KT LQE+ P Y++ SGPDH+ R+ + Sbjct: 173 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 230 Query: 197 GLAPAQGMDCSKRAAEQVAA 216 G A +K+ AEQ AA Sbjct: 231 GRLHAAYTGHNKKEAEQGAA 250 >gi|308235889|ref|ZP_07666626.1| ribonuclease III [Gardnerella vaginalis ATCC 14018] Length = 309 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 106/209 (50%), Gaps = 17/209 (8%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH + ++YERLEFLGD +L L+ + LF+ EG+L+ V Sbjct: 88 LLVEALTHRSFSHEHPGTKNYERLEFLGDAVLELVSTETLFSAHPDMTEGQLAKLRAKAV 147 Query: 80 SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 S S VAR+ L + +I + + + SI D+VE+LI A +++ GI+ A Sbjct: 148 SEWALSAVARDKLHVGPYILLGHGEMEHGGAQKDSILCDIVEALIGATFVEHGIDEARAV 207 Query: 139 VDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF---TVV 192 V + L G D KT L AH P+Y+++ SGPD+ P F V+ Sbjct: 208 VHRLIDDTLAEVLTEGPA-LDWKTSLTVLAHEMGLDEPQYRMSV-SGPDYAPVFHARAVL 265 Query: 193 VEISG---LAPAQGMDCSKRAAEQVAAAE 218 SG L A G SKR A Q+AAA+ Sbjct: 266 AHESGDELLGEADG--SSKRKA-QLAAAD 291 >gi|189462275|ref|ZP_03011060.1| hypothetical protein BACCOP_02961 [Bacteroides coprocola DSM 17136] gi|189431014|gb|EDU99998.1| hypothetical protein BACCOP_02961 [Bacteroides coprocola DSM 17136] Length = 314 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 15/226 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y K +G+ N + ++AL H S S + + ERLEFLGD IL +++ +++ Sbjct: 20 YLCFYKMLGFYPRNIEIYQQALLHKSSSIKAGKGRLLNNERLEFLGDAILDAIVADIVYK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F+ +EG L+ + +V ET ++VA E+ L I+ ++ + S+M + E+ Sbjct: 80 KFEGKREGFLTNTRSKIVQRETLNRVAVEIGLDKLIKYTTR-QSSHNSYMC---GNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKV 177 LI A+YLD G F+++ + L K R + K++L EW+ KF V E+ + Sbjct: 136 LIGAIYLDRGYRACKKFMEERIINQYLNLEKISRKEVNFKSKLIEWSQKNKFCV--EFNL 193 Query: 178 TFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +S D +P F + + + G SK+ ++Q AA L + Sbjct: 194 IEQSLDSDQNPIFETQITVENIPAGTGKGYSKKESQQEAAHATLTK 239 >gi|317968415|ref|ZP_07969805.1| putative ribonuclease III [Synechococcus sp. CB0205] Length = 236 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 98/198 (49%), Gaps = 7/198 (3%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L++ALTH+S S ++E+LEFLGD +L L S L H+ + G+ S LVS Sbjct: 29 LDEALTHTSAGLSV--NHEKLEFLGDAVLRLAASEFLEQHYPNLSVGQSSALRAQLVSDR 86 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141 ++ R + + + +R+ D S +++A+ E+ I ALY L G + ++ Sbjct: 87 WLGELGRAVGIDAVLRIGPTAAGDT-SARETLRAEACEACIGALYRLWGDLTPVLLWLTP 145 Query: 142 YWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGL 198 +W+ RA ++ + K+ LQEW+ + P+Y+ S DP RF V + Sbjct: 146 HWQATARAFEADPHLHNWKSALQEWSQGQKRGLPDYRCEEVSQVHADPRRFHCQVSLGKT 205 Query: 199 APAQGMDCSKRAAEQVAA 216 +G S+R AEQ AA Sbjct: 206 TLGEGWGRSRRQAEQEAA 223 >gi|288800507|ref|ZP_06405965.1| ribonuclease III [Prevotella sp. oral taxon 299 str. F0039] gi|288332720|gb|EFC71200.1| ribonuclease III [Prevotella sp. oral taxon 299 str. F0039] Length = 321 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 108/225 (48%), Gaps = 29/225 (12%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ N L + AL+H SI ++ + ERLEFLGD IL ++ +++ HF +E Sbjct: 7 LGFYPRNIELYQMALSHKSIHFKNKKGKPVNNERLEFLGDAILDAIVGDIVYKHFPGKRE 66 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + LV ET +++A+E+ L+ I SS S+M + E+LI ALYL Sbjct: 67 GFLTNTRSKLVQRETLNKIAQEIGLSRLI-YSSGRNFSHNSYMA---GNAFEALIGALYL 122 Query: 129 DGGIEVAGTFV-DKYWKQR------ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF-- 179 D G + F+ +K K+ A K F K+ L EWA + + F Sbjct: 123 DRGYNLCMRFMQEKILKKMVNIDTVAYKEVNF----KSRLIEWAQKN-----KMNIAFNL 173 Query: 180 ---RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + + +P F V I G+ SK+ ++Q+A+ E L+ Sbjct: 174 LEQKKDEEGNPVFKYCVVIEGIKCNSASGFSKKESQQLASEETLE 218 >gi|311115015|ref|YP_003986236.1| ribonuclease III [Gardnerella vaginalis ATCC 14019] gi|310946509|gb|ADP39213.1| ribonuclease III [Gardnerella vaginalis ATCC 14019] Length = 298 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 106/209 (50%), Gaps = 17/209 (8%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH + ++YERLEFLGD +L L+ + LF+ EG+L+ V Sbjct: 77 LLVEALTHRSFSHEHPGTKNYERLEFLGDAVLELVSTETLFSAHPDMTEGQLAKLRAKAV 136 Query: 80 SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 S S VAR+ L + +I + + + SI D+VE+LI A +++ GI+ A Sbjct: 137 SEWALSAVARDKLHVGPYILLGHGEMEHGGAQKDSILCDIVEALIGATFVEHGIDEARAV 196 Query: 139 VDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF---TVV 192 V + L G D KT L AH P+Y+++ SGPD+ P F V+ Sbjct: 197 VHRLIDDTLAEVLTEGPA-LDWKTSLTVLAHEMGLDEPQYRMSV-SGPDYAPVFHARAVL 254 Query: 193 VEISG---LAPAQGMDCSKRAAEQVAAAE 218 SG L A G SKR A Q+AAA+ Sbjct: 255 AHESGDELLGEADG--SSKRKA-QLAAAD 280 >gi|67923480|ref|ZP_00516956.1| Ribonuclease III [Crocosphaera watsonii WH 8501] gi|67854668|gb|EAM49951.1| Ribonuclease III [Crocosphaera watsonii WH 8501] Length = 238 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 104/201 (51%), Gaps = 7/201 (3%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL+ ALTH +IS + +Y++LEF+GD ++ L+ + +L + + GE + + LVS Sbjct: 31 LLDLALTHPTISK--ENNYQQLEFVGDSVVRLVSAEILLETYPNELVGEFAAIRSILVSD 88 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFVD 140 T ++ A L ++ + + +D ++ + AD E+++ ALYL + + ++D Sbjct: 89 RTLAEFADNYGLDRYLLMIDSVAQDKIGRVSWL-ADTFEAVLGALYLSTQNMTLIRPWLD 147 Query: 141 KYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISG 197 Q+A ++S R++ K LQEW ++ + P+Y+V + H RF V + Sbjct: 148 PLLLQKAAEIRSDPARQNYKDALQEWTQGQYKILPDYRVAEQHQNRGHHQRFFAEVWLKD 207 Query: 198 LAPAQGMDCSKRAAEQVAAAE 218 G SK+ AEQ AA + Sbjct: 208 RQLGSGYGRSKKMAEQAAAKD 228 >gi|328696734|ref|XP_003240110.1| PREDICTED: endoribonuclease dcr-1-like isoform 3 [Acyrthosiphon pisum] Length = 1630 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 32/156 (20%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y LE+RIGY+F ++ LL +ALTH + + E Y+RLEFLGD IL LI+T + H Sbjct: 1373 YELLERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYH 1432 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD----------------------- 102 GE++ +SLV+ T + ++ + L FI S Sbjct: 1433 KTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQE 1492 Query: 103 ----LRKDVCSFMTSIQ-----ADVVESLIAALYLD 129 + + C S+ D+ ESLIAA+YLD Sbjct: 1493 VLYLIEESDCYAAESVDVPKVLGDLFESLIAAIYLD 1528 Score = 41.2 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +YER+E GD L +S +LF+ F S EG L+ LV V R L+L S++ Sbjct: 1151 NYERMETYGDSFLKFAVSLVLFDAFPSDNEGVLTELKMKLVGNRNLLYVGRNLNLGSYLV 1210 Query: 99 VS 100 V+ Sbjct: 1211 VN 1212 >gi|328696732|ref|XP_001945890.2| PREDICTED: endoribonuclease dcr-1-like isoform 1 [Acyrthosiphon pisum] Length = 1691 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 32/156 (20%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y LE+RIGY+F ++ LL +ALTH + + E Y+RLEFLGD IL LI+T + H Sbjct: 1434 YELLERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYH 1493 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD----------------------- 102 GE++ +SLV+ T + ++ + L FI S Sbjct: 1494 KTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQE 1553 Query: 103 ----LRKDVCSFMTSIQ-----ADVVESLIAALYLD 129 + + C S+ D+ ESLIAA+YLD Sbjct: 1554 VLYLIEESDCYAAESVDVPKVLGDLFESLIAAIYLD 1589 Score = 41.2 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +YER+E GD L +S +LF+ F S EG L+ LV V R L+L S++ Sbjct: 1212 NYERMETYGDSFLKFAVSLVLFDAFPSDNEGVLTELKMKLVGNRNLLYVGRNLNLGSYLV 1271 Query: 99 VS 100 V+ Sbjct: 1272 VN 1273 >gi|328696730|ref|XP_003240109.1| PREDICTED: endoribonuclease dcr-1-like isoform 2 [Acyrthosiphon pisum] Length = 1648 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 32/156 (20%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y LE+RIGY+F ++ LL +ALTH + + E Y+RLEFLGD IL LI+T + H Sbjct: 1391 YELLERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYH 1450 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD----------------------- 102 GE++ +SLV+ T + ++ + L FI S Sbjct: 1451 KTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQE 1510 Query: 103 ----LRKDVCSFMTSIQ-----ADVVESLIAALYLD 129 + + C S+ D+ ESLIAA+YLD Sbjct: 1511 VLYLIEESDCYAAESVDVPKVLGDLFESLIAAIYLD 1546 Score = 41.2 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +YER+E GD L +S +LF+ F S EG L+ LV V R L+L S++ Sbjct: 1169 NYERMETYGDSFLKFAVSLVLFDAFPSDNEGVLTELKMKLVGNRNLLYVGRNLNLGSYLV 1228 Query: 99 VS 100 V+ Sbjct: 1229 VN 1230 >gi|284022406|gb|ADB65770.1| drosha [Marsupenaeus japonicus] Length = 400 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 14/224 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 S E+ IG F + LL +A T SI + S +RLEFLGD +L L+ S L+ +F Sbjct: 143 SKFEESIGVHFNHIRLLARAFTDRSIGFNNLTLGSNQRLEFLGDTVLQLVASEYLYKYFP 202 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS+ +SLV+ T + V +L + ++ + S L+ ++ T +AD++E+ + Sbjct: 203 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMTAYT-MYSHLKTEL---KTKDRADLLEAFLG 258 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGV------TPEYK 176 ALY+D G++ F + R + + D K++LQ+ + P YK Sbjct: 259 ALYIDRGLDYCRAFCQVCFFPRLHQFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPIYK 318 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V GP + +TV V G A+ S + AE AA E L Sbjct: 319 VIECKGPTNTRVYTVAVYFRGRRLAKASGHSIQQAEMNAAREAL 362 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 4/95 (4%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS-- 100 EF GD ++ L S LF+ F S +EG L+ ++V + + +A +L L F+ + Sbjct: 2 FEFFGDAVVEFLTSIHLFHLFPSLEEGGLATYRAAIVQNQHLAVLAEKLGLDQFMLYAHG 61 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 SDL D + A+ E+L+ A++LD GIE A Sbjct: 62 SDLCHDF--ELRHAMANCFEALMGAIFLDTGIEDA 94 >gi|325281581|ref|YP_004254123.1| Ribonuclease 3 [Odoribacter splanchnicus DSM 20712] gi|324313390|gb|ADY33943.1| Ribonuclease 3 [Odoribacter splanchnicus DSM 20712] Length = 246 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 27/222 (12%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAK 67 +IG+ N+SL AL H S S + +YERLEFLGD +LG +++ LL+ F Sbjct: 26 QIGFVPNNKSLYRLALLHKSASKMTSKGVVLNYERLEFLGDAVLGAIVAELLYKFFPKKD 85 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ + +VS E+ +++A + L + SD+ ++ I DV E+ I A++ Sbjct: 86 EGFLTRVRSKVVSRESLNELAINIGLDKAVVAKSDISRN-----KHIYGDVFEAFIGAMF 140 Query: 128 LDGGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 LD G F++K ++ + L + + K+ L EW KV Sbjct: 141 LDQGFVNTKRFIEKFIFPNFFDIKDLVT--IDTNYKSRLIEWGQKN-------KVDIHFQ 191 Query: 183 PDHDPR----FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 D R F V +S +G SK+ AEQ AA V+ Sbjct: 192 TDEVARGRRKFCCTVMLSEEEKGKGEGTSKKEAEQNAAKIVI 233 >gi|149278306|ref|ZP_01884444.1| ribonuclease III [Pedobacter sp. BAL39] gi|149231072|gb|EDM36453.1| ribonuclease III [Pedobacter sp. BAL39] Length = 242 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 107/217 (49%), Gaps = 13/217 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L+ +G+ N L + A H S++ + + S ERLEFLGD ILG +++ LLF ++ Sbjct: 21 LKNILGFVPGNTILYQMAFRHRSVAKVLKNGSRSSNERLEFLGDAILGSVVAELLFKNYP 80 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V+ +Q+AR++ I V +V + S+ D E+LI Sbjct: 81 YKEEGFLTEMRSKIVNRANLNQLARKMGFDQLI-VFDQKTVNVQTKHHSMLGDAFEALIG 139 Query: 125 ALYLDGGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 A+YLD G F+ K Y L+ + + K++L EW + G +++ Sbjct: 140 AIYLDKGYNFTKDFLLKRIIKPYVDIHTLELTE--TNFKSKLIEWCQ-RHGKDVIFEMVQ 196 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 S D FT+ I G + G D +K+ AE++AA Sbjct: 197 NSEGDSPKLFTISAVIDGESVGIGRDYNKKNAEKLAA 233 >gi|227545817|ref|ZP_03975866.1| ribonuclease III [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213933|gb|EEI81772.1| ribonuclease III [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 242 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 101/206 (49%), Gaps = 13/206 (6%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH + +YERLEFLGD +L L+ + LF EG+L+ V Sbjct: 27 LLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHPDMTEGQLAKMRAKAV 86 Query: 80 SAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134 S + S +A+ +L + +I + + + SI D+VESLI A +L+ GI+ V Sbjct: 87 SEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLIGATFLEHGIDEARKV 146 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 +D + A + D KT L AH P Y + SGP++ FT V Sbjct: 147 IHRLIDDTLAEVATEGPAL--DWKTSLTVKAHGLGKEEPVYHMEV-SGPEYAQIFTARVS 203 Query: 195 I--SGLAPAQGMDCSKRAAEQVAAAE 218 + +G G SKR A Q+AAAE Sbjct: 204 LGENGDTIGIGKGSSKRKA-QLAAAE 228 >gi|262202009|ref|YP_003273217.1| ribonuclease III [Gordonia bronchialis DSM 43247] gi|262085356|gb|ACY21324.1| ribonuclease III [Gordonia bronchialis DSM 43247] Length = 262 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 101/201 (50%), Gaps = 20/201 (9%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S ++ + ERLEFLGD +LG++I+ L+ + EGEL+ S+V Sbjct: 25 LLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVVITERLYLSYPDRPEGELAKIRASVV 84 Query: 80 SAETCSQVARELDLASFIR---------VSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 + + VAR L R ++ KD SI AD +ESL A++++ Sbjct: 85 NMHALADVARSLGPGGLGRHLYLGRGEEMTGGRDKD------SILADGLESLFGAVFIEH 138 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G+ + + + + ++G D KT LQE + + P+Y+++ +GPDH+ Sbjct: 139 GLATSKRVILRLFDDVIDRAGTLGAGLDWKTSLQELSAEQGLGPPQYQIS-STGPDHNKE 197 Query: 189 FTVVVEISGLAPAQGMDCSKR 209 FT V ++G + G+ +K+ Sbjct: 198 FTAVAVVAGESLGNGVGRTKK 218 >gi|150402698|ref|YP_001329992.1| ribonuclease III [Methanococcus maripaludis C7] gi|150033728|gb|ABR65841.1| Ribonuclease III [Methanococcus maripaludis C7] Length = 229 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 100/221 (45%), Gaps = 7/221 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + L ++ F + + ++A HSS + + E ERLE+LGD +L L+IS LF Sbjct: 3 NFEKLLSKLDIKFNDLDIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLELIISEYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +S EGE+S V A++L ++ + +I +DV E Sbjct: 63 KK-ESLSEGEMSKLRAKYVCESALFTYAKKLKFNDYVLLGKGELNSKGYNKPAIISDVFE 121 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179 + IAA+YLD G++ A FV+ + ++ K D KT LQE+ T EY Sbjct: 122 AFIAAIYLDQGLDSAKKFVNNHIIPIIEENSKELFIDYKTRLQEFPELN-NKTIEYINLE 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 G HD +F V V+ +G SK+ AE AA L Sbjct: 181 EVGEPHDKKFIVAVKSGRKMLGKGTGKSKKEAEMKAAKNAL 221 >gi|183508806|ref|ZP_02958264.1| ribonuclease III [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182675758|gb|EDT87663.1| ribonuclease III [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 236 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 20/215 (9%) Query: 19 NRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNH-------FDSAKEG 69 N S+ +ALTH S + H ++Y+RLEFLGD + +IS +FN+ S EG Sbjct: 19 NLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNFIFNYKIKDNEKMHSLDEG 78 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 E++ +++V +E S A++L L F+ + L +D + M I D+ E+ I A+ D Sbjct: 79 EMTRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARMEKIYEDIFEAFIGAVAQD 138 Query: 130 GGIEVAGTFVD----KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 GI+ ++ KY+++ + +++D KT QE A YK+ G Sbjct: 139 QGIKKVSLILEKTLIKYFREGQI---NYQKDYKTIFQEQAQRINKKPIMYKLVRNEGDKK 195 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + I G+ G+ +++ AE +AA + Sbjct: 196 EVHLVWNDLIYGI----GIASTRKEAEILAAKNAI 226 >gi|326798772|ref|YP_004316591.1| ribonuclease 3 [Sphingobacterium sp. 21] gi|326549536|gb|ADZ77921.1| Ribonuclease 3 [Sphingobacterium sp. 21] Length = 243 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 17/228 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L+ +G+ N L + A H S++ + S ERLEFLGD ILG +++ LLF + Sbjct: 21 LKNLLGFIPGNLYLYQMAFRHKSVAVQVKKGTKNSNERLEFLGDAILGAVVAELLFKMYP 80 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +VS +Q+AR+L I+ S + +S+ D E+LI Sbjct: 81 YKDEGFLTEMRSKIVSRVHLNQLARKLGFDELIQYDSKMV-GYPGKSSSLLGDAFEALIG 139 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSG-------KFRRDAKTELQEWAHAKFGVTPEYKV 177 A+YLD G F + R +K + + K+ L EW + G ++V Sbjct: 140 AVYLDKGY----MFTRNFLLSRIIKPHVDIHLLEQTETNFKSRLIEWCQST-GNEVLFEV 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + + FTV ISG G D +K+ AE++AA + + GI Sbjct: 195 ANNAEGESAKLFTVEAIISGEVRGTGRDYNKKNAEKLAAEKACEALGI 242 >gi|167752469|ref|ZP_02424596.1| hypothetical protein ALIPUT_00720 [Alistipes putredinis DSM 17216] gi|167659538|gb|EDS03668.1| hypothetical protein ALIPUT_00720 [Alistipes putredinis DSM 17216] Length = 264 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 11/221 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS----ISHSYQESYERLEFLGDRILGLLISTLLFN 61 Y +++ G+ N L + AL H S ++ Q + ERLEFLGD ++ + S L+ Sbjct: 20 YRIIDELFGFVPHNIELYKLALIHKSASLVLADGRQINNERLEFLGDAVIEAVTSDYLYI 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +EG L+ + +VS ++ + +AR + L ++ + + I D E+ Sbjct: 80 EFPDRQEGFLTQLRSKIVSRQSLNTIARTIGLDRYVIANPTGSTN----QKHIYGDAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 +I A+YLD G E A + R L D K+ L EW V Sbjct: 136 MIGAIYLDQGYEFANRLLINNIYYRYLNLDNLTDEETDFKSRLIEWCQKTHHTIAFETVH 195 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 R+ + P F V I G+ G SK+ AEQ AA V Sbjct: 196 GRNYSSNHPIFDATVVIDGIRVGHGQGESKKEAEQCAAHSV 236 >gi|13357763|ref|NP_078037.1| ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762098|ref|YP_001752286.1| ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920496|ref|ZP_02931789.1| ribonuclease III [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171920571|ref|ZP_02931835.1| ribonuclease III [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178791|ref|ZP_02964587.1| ribonuclease III [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|186701949|ref|ZP_02971588.1| ribonuclease III [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|188024220|ref|ZP_02996925.1| ribonuclease III [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188524062|ref|ZP_03004155.1| ribonuclease III [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867699|ref|ZP_03079700.1| ribonuclease III [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273484|ref|ZP_03206020.1| ribonuclease III [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554634|ref|YP_002284601.1| ribonuclease III [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550368|ref|ZP_03771317.1| ribonuclease III [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551297|ref|ZP_03772243.1| ribonuclease III [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|22654077|sp|Q9PQT8|RNC_UREPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|11263399|pir||F82919 ribonuclease III UU205 [imported] - Ureaplasma urealyticum gi|6899171|gb|AAF30612.1|AE002120_4 ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827675|gb|ACA32937.1| ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902964|gb|EDT49253.1| ribonuclease III [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171903275|gb|EDT49564.1| ribonuclease III [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209411|gb|EDU06454.1| ribonuclease III [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|186700702|gb|EDU18984.1| ribonuclease III [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|188018874|gb|EDU56914.1| ribonuclease III [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|195659811|gb|EDX53191.1| ribonuclease III [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660554|gb|EDX53810.1| ribonuclease III [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250004|gb|EDY74784.1| ribonuclease III [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209542135|gb|ACI60364.1| ribonuclease III [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379112|gb|EEH01477.1| ribonuclease III [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379522|gb|EEH01884.1| ribonuclease III [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 236 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 20/215 (9%) Query: 19 NRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNH-------FDSAKEG 69 N S+ +ALTH S + H ++Y+RLEFLGD + +IS +FN+ S EG Sbjct: 19 NLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNFIFNYKIKDNEKMRSLDEG 78 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 E++ +++V +E S A++L L F+ + L +D + M I D+ E+ I A+ D Sbjct: 79 EMTRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARMEKIYEDIFEAFIGAVAQD 138 Query: 130 GGIEVAGTFVD----KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 GI+ ++ KY+++ + +++D KT QE A YK+ G Sbjct: 139 QGIKKVSLILEKTLIKYFREGQI---NYQKDYKTIFQEQAQRINKKPIMYKLVRNEGDKK 195 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + I G+ G+ +++ AE +AA + Sbjct: 196 EVHLVWNDLIYGI----GIASTRKEAEILAAKNAI 226 >gi|188518513|ref|ZP_03003985.1| ribonuclease III [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188997913|gb|EDU67010.1| ribonuclease III [Ureaplasma urealyticum serovar 11 str. ATCC 33695] Length = 239 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 20/215 (9%) Query: 19 NRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNH-------FDSAKEG 69 N S+ +ALTH S + H ++Y+RLEFLGD + +IS +FN+ S EG Sbjct: 19 NLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNFIFNYKIKDNEKMRSLDEG 78 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 E++ +++V +E S A++L L F+ + L +D + M I D+ E+ I A+ D Sbjct: 79 EMTRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARMEKIYEDIFEAFIGAVAQD 138 Query: 130 GGIEVAGTFVD----KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 GI+ ++ KY+++ + +++D KT QE A YK+ G Sbjct: 139 QGIKKVSLILEKTLIKYFREGQI---NYQKDYKTIFQEQAQRINKKPIMYKLVRNEGDKK 195 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + I G+ G+ +++ AE +AA + Sbjct: 196 EVHLVWNDLIYGI----GIASTRKEAEILAAKNAI 226 >gi|296139284|ref|YP_003646527.1| ribonuclease III [Tsukamurella paurometabola DSM 20162] gi|296027418|gb|ADG78188.1| ribonuclease III [Tsukamurella paurometabola DSM 20162] Length = 249 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/182 (34%), Positives = 95/182 (52%), Gaps = 10/182 (5%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S ++ + ERLEFLGD +LG+ ++ L+ EGEL+ S+V Sbjct: 28 LLTLALTHRSYAYEAGGLPTNERLEFLGDSVLGISVTEWLYVTHPDKPEGELAKIRASVV 87 Query: 80 SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + ++VAR+L L + + + SI AD +E+L+ A++++ GI+ A Sbjct: 88 NMHALARVARKLGEGGLGAHLYLGRGEELTGGRDKDSILADGMEALLGAVHIEHGIDTAR 147 Query: 137 TFVDKYWKQRALKSGKFRR--DAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + V + ++ S D KT LQE A GV P Y++T +GPDHD FT VV Sbjct: 148 SVVLRLFEPMLTTSSTMGAGLDWKTSLQELTAERDLGV-PAYRIT-STGPDHDKEFTAVV 205 Query: 194 EI 195 I Sbjct: 206 VI 207 >gi|23464896|ref|NP_695499.1| ribonuclease III [Bifidobacterium longum NCC2705] gi|23325487|gb|AAN24135.1| ribonuclease III [Bifidobacterium longum NCC2705] Length = 277 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 101/206 (49%), Gaps = 13/206 (6%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH + +YERLEFLGD +L L+ + LF EG+L+ V Sbjct: 62 LLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHPDMTEGQLAKMRAKAV 121 Query: 80 SAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134 S + S +A+ +L + +I + + + SI D+VESLI A +L+ GI+ V Sbjct: 122 SEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLIGATFLEHGIDEARKV 181 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 +D + A + D KT L AH P Y + SGP++ FT V Sbjct: 182 IHRLIDDTLAEVATEGPAL--DWKTSLTVKAHGLGKEEPVYHMEV-SGPEYAQIFTARVS 238 Query: 195 I--SGLAPAQGMDCSKRAAEQVAAAE 218 + +G G SKR A Q+AAAE Sbjct: 239 LGENGDIIGIGKGSSKRKA-QLAAAE 263 >gi|167538060|ref|XP_001750696.1| hypothetical protein [Monosiga brevicollis MX1] gi|163770830|gb|EDQ84509.1| predicted protein [Monosiga brevicollis MX1] Length = 603 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 107/227 (47%), Gaps = 25/227 (11%) Query: 15 YAFANRS-LLEK---ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 Y+ AN + +LE+ ALTH S + + Q S ERLEFLGDR+L L + L++ F EG Sbjct: 289 YSAANITYVLERTRPALTHGSRASAEQPSNERLEFLGDRVLNLAAAEHLYHAFPKEGEGV 348 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRV--SSDLRKDVCSFMTSIQADVVESLIAALYL 128 L+ + +++V+A+ +A+ L L I+V DL S T + D VE+L+ A+ L Sbjct: 349 LTKKLSAMVNAQALHGMAKRLKLDQHIQVIEGVDL-----SERTRVLGDAVEALLGAILL 403 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG A W ++ R + K LQ A KF T R + + Sbjct: 404 DGGWPAALAVTHHLW---SISHTPTRTNFKEALQILAQ-KFEPHELPIYTPRGCDESESV 459 Query: 189 FTVVVEISGLAPA----------QGMDCSKRAAEQVAAAEVLKREGI 225 T V + P+ G S +AAEQ AA VLK+ I Sbjct: 460 RTWHVRVEANLPSSWWGPIQLMGHGQGTSIKAAEQAAAISVLKQLNI 506 >gi|150399590|ref|YP_001323357.1| ribonuclease III [Methanococcus vannielii SB] gi|150012293|gb|ABR54745.1| Ribonuclease III [Methanococcus vannielii SB] Length = 227 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 101/205 (49%), Gaps = 7/205 (3%) Query: 17 FANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N ++ ++A HSS + + E ERLE+LGD +L L++S LF + EGE+S Sbjct: 15 FNNLNIFKQAFIHSSYVNEHDNENLEDNERLEYLGDAVLELVVSEYLFEN-KLLNEGEMS 73 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + V + A++L+ +I + +I +DV E+ IAA+YLD G+ Sbjct: 74 KLRSKYVCEYSLFLYAKKLNFGDYILLGKGEINSNGFNRPTILSDVFEAFIAAIYLDLGL 133 Query: 133 EVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 F +K+ + S K D KT+LQE ++ T Y + G HD F V Sbjct: 134 CSVKKFFNKFIVPIIEENSKKLFIDYKTKLQEMIQSE-NKTVRYILLEELGEPHDKEFIV 192 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAA 216 V+I ++G+ SK+ AE+ AA Sbjct: 193 AVKIGRKIISKGVGKSKKDAERQAA 217 >gi|239622484|ref|ZP_04665515.1| ribonuclease III [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514481|gb|EEQ54348.1| ribonuclease III [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 272 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 101/206 (49%), Gaps = 13/206 (6%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH + +YERLEFLGD +L L+ + LF EG+L+ V Sbjct: 57 LLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHPDMTEGQLAKMRAKAV 116 Query: 80 SAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134 S + S +A+ +L + +I + + + SI D+VESLI A +L+ GI+ V Sbjct: 117 SEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLIGATFLEHGIDEARKV 176 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 +D + A + D KT L AH P Y + SGP++ FT V Sbjct: 177 IHRLIDDTLAEVATEGPAL--DWKTSLTVKAHGLGKEEPVYHMEV-SGPEYAQIFTARVS 233 Query: 195 I--SGLAPAQGMDCSKRAAEQVAAAE 218 + +G G SKR A Q+AAAE Sbjct: 234 LGENGDIIGIGKGSSKRKA-QLAAAE 258 >gi|325000484|ref|ZP_08121596.1| RNAse III [Pseudonocardia sp. P1] Length = 249 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 68/213 (31%), Positives = 95/213 (44%), Gaps = 19/213 (8%) Query: 19 NRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL ALTH S + H + ERLEFLGD +L ++I+ L+ EG+L+ Sbjct: 25 DEELLTLALTHRSYAYEHGGLPTNERLEFLGDSVLSIVITERLYRDHPDLPEGQLAKLRA 84 Query: 77 SLVSAETCSQVARELD--------LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 S+V+ + VA L L +++ + SI AD E+L+ A+YL Sbjct: 85 SVVNMHALAGVAVALPTPGESSDGLGAYLYLGRGEELTGGRSKASILADATEALLGAVYL 144 Query: 129 DGGIE-----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 G+E V F D L +G D KT LQE A PEY++ GP Sbjct: 145 QHGLEPSRELVHRLFADLLHSAPLLGAG---LDWKTSLQELTAAGGHGVPEYRID-EEGP 200 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 DH FT + G G +K+ AEQ AA Sbjct: 201 DHLKVFTATAVVGGRDLGSGAGRTKKEAEQKAA 233 >gi|254411633|ref|ZP_05025409.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420] gi|196181355|gb|EDX76343.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420] Length = 278 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 99/187 (52%), Gaps = 9/187 (4%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L+ ALTH S+S +Y++LEF+GD ++ + S LLF + +A G+ + + LVS Sbjct: 74 LDLALTHPSMSRDV--NYDQLEFVGDAVVRMAASELLFETYPNASVGDFAAIRSVLVSDR 131 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFVDK 141 +Q+A+E L ++ ++ D M+ + AD E+++ ALYL +E+ ++D Sbjct: 132 ILAQLAQEYGLERYLLLAPSAAADPRGEMSRL-ADAFEAIVGALYLSTHTLELIRPWLDP 190 Query: 142 YWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISG- 197 ++++ + R++ K LQEW A + PEY++T + + D RFT V G Sbjct: 191 HFQRLTEDILKDPARQNYKDALQEWTQAHYKSLPEYRLTETNPIEADENRFTAQVWFKGQ 250 Query: 198 -LAPAQG 203 L QG Sbjct: 251 QLGEGQG 257 >gi|325299342|ref|YP_004259259.1| Ribonuclease 3 [Bacteroides salanitronis DSM 18170] gi|324318895|gb|ADY36786.1| Ribonuclease 3 [Bacteroides salanitronis DSM 18170] Length = 325 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/218 (27%), Positives = 109/218 (50%), Gaps = 15/218 (6%) Query: 14 GYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 G+ N + ++AL H S S ++ + ERLEFLGD IL +++ +++ F+ +EG Sbjct: 28 GFYPRNIDIYKQALLHKSSSIKNEKGRLLNNERLEFLGDAILDAVVADIVYKRFEKKREG 87 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 L+ + +V ET + +A ++ L ++ ++ S + + + E+LI ALYLD Sbjct: 88 FLTNTRSKIVQRETLNHIAVQIGLDKLVKFTTRQ----SSHNSYMGGNAFEALIGALYLD 143 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPDH 185 G F+++ + L K R + K++L EW+ KF + + + +S D Sbjct: 144 RGYRACKKFMEERIISQYLDIDKLSRKEVNFKSKLIEWSQKNKFQIA--FNLVNQSLDDE 201 Query: 186 -DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +P F + + + G SK+ ++Q AA E LK+ Sbjct: 202 LNPIFNTQILVENVPAGTGKGYSKKESQQEAAHETLKK 239 >gi|319900438|ref|YP_004160166.1| RNAse III [Bacteroides helcogenes P 36-108] gi|319415469|gb|ADV42580.1| RNAse III [Bacteroides helcogenes P 36-108] Length = 290 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 112/218 (51%), Gaps = 13/218 (5%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ N + ++AL H SIS ++ + ERLEFLGD IL ++ +++ HF+ +E Sbjct: 27 LGFFPRNIQIYQQALLHKSISIRSEKGRPLNNERLEFLGDAILDAIVGDIVYKHFEGRRE 86 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V ET +++A E+ L ++ SS S + + + E+ + A+YL Sbjct: 87 GFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSS----RSSSHNSYMYGNAFEAFVGAIYL 142 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184 D G + F+++ + + K R + K++L EW+ K V+ E + D Sbjct: 143 DQGYDRCKWFMEEKIFKHYIDLDKMSRKEVNFKSKLIEWSQKNKMEVSFEL-IKQLLDKD 201 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 ++P F + I G++ G SK+ ++Q AA L++ Sbjct: 202 YNPMFHTEIRIEGVSAGTGTGYSKKESQQNAAQIALRK 239 >gi|311747672|ref|ZP_07721457.1| ribonuclease III [Algoriphagus sp. PR1] gi|126575659|gb|EAZ79969.1| ribonuclease III [Algoriphagus sp. PR1] Length = 250 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 21/210 (10%) Query: 19 NRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 N +L + ALT SS+ S ++ S ERLEFLGD ILG +++ LF + EG L+ Sbjct: 39 NIALYKLALTPSSLGEETSKGFKISNERLEFLGDAILGAVVAEYLFQKYPYRDEGFLTET 98 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 + LV+ E+ + ++ L + + R + + S+ D++E+ + A+YLD G Sbjct: 99 RSKLVNRESLNATGVKIGLKKILNLEIGDRNFIGN--KSLYGDILEAFLGAVYLDKGYH- 155 Query: 135 AGTFVDKYWKQRALKSGKFRRDA--------KTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 F K+ +R L F D K+++ EW+ + EYK+ G Sbjct: 156 ---FTKKFILKRILLH--FDLDGMITTVSNYKSKIIEWSQRE-NKNIEYKILHVHGNQRF 209 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 F V +EI G +QG +K+ AEQ A+ Sbjct: 210 KEFIVALEIDGEEASQGKGPTKKKAEQEAS 239 >gi|46190765|ref|ZP_00121069.2| COG0571: dsRNA-specific ribonuclease [Bifidobacterium longum DJO10A] gi|189439904|ref|YP_001954985.1| ribonuclease III [Bifidobacterium longum DJO10A] gi|312133320|ref|YP_004000659.1| rnc [Bifidobacterium longum subsp. longum BBMN68] gi|317482014|ref|ZP_07941039.1| ribonuclease III [Bifidobacterium sp. 12_1_47BFAA] gi|322688500|ref|YP_004208234.1| ribonuclease III [Bifidobacterium longum subsp. infantis 157F] gi|322690510|ref|YP_004220080.1| ribonuclease III [Bifidobacterium longum subsp. longum JCM 1217] gi|90101613|sp|Q8G7H1|RNC_BIFLO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189428339|gb|ACD98487.1| dsRNA-specific ribonuclease [Bifidobacterium longum DJO10A] gi|291517392|emb|CBK71008.1| RNAse III [Bifidobacterium longum subsp. longum F8] gi|311772536|gb|ADQ02024.1| Rnc [Bifidobacterium longum subsp. longum BBMN68] gi|316916581|gb|EFV37978.1| ribonuclease III [Bifidobacterium sp. 12_1_47BFAA] gi|320455366|dbj|BAJ65988.1| ribonuclease III [Bifidobacterium longum subsp. longum JCM 1217] gi|320459836|dbj|BAJ70456.1| ribonuclease III [Bifidobacterium longum subsp. infantis 157F] Length = 242 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 101/206 (49%), Gaps = 13/206 (6%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH + +YERLEFLGD +L L+ + LF EG+L+ V Sbjct: 27 LLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHPDMTEGQLAKMRAKAV 86 Query: 80 SAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134 S + S +A+ +L + +I + + + SI D+VESLI A +L+ GI+ V Sbjct: 87 SEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLIGATFLEHGIDEARKV 146 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 +D + A + D KT L AH P Y + SGP++ FT V Sbjct: 147 IHRLIDDTLAEVATEGPAL--DWKTSLTVKAHGLGKEEPVYHMEV-SGPEYAQIFTARVS 203 Query: 195 I--SGLAPAQGMDCSKRAAEQVAAAE 218 + +G G SKR A Q+AAAE Sbjct: 204 LGENGDIIGIGKGSSKRKA-QLAAAE 228 >gi|296453545|ref|YP_003660688.1| ribonuclease III [Bifidobacterium longum subsp. longum JDM301] gi|296182976|gb|ADG99857.1| Ribonuclease III [Bifidobacterium longum subsp. longum JDM301] Length = 242 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 101/206 (49%), Gaps = 13/206 (6%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH + +YERLEFLGD +L L+ + LF EG+L+ V Sbjct: 27 LLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHPDMTEGQLAKMRAKAV 86 Query: 80 SAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134 S + S +A+ +L + +I + + + SI D+VESLI A +L+ GI+ V Sbjct: 87 SEDALSAIAKTKLKVGPYILLGHGETEQGGAEKNSILCDIVESLIGATFLEHGIDEARKV 146 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 +D + A + D KT L AH P Y + SGP++ FT V Sbjct: 147 IHRLIDDTLAEVATEGPAL--DWKTSLTVKAHGLGKDEPVYHMEV-SGPEYAQIFTARVS 203 Query: 195 I--SGLAPAQGMDCSKRAAEQVAAAE 218 + +G G SKR A Q+AAAE Sbjct: 204 LGENGDIIGIGKGSSKRKA-QLAAAE 228 >gi|325286163|ref|YP_004261953.1| ribonuclease III [Cellulophaga lytica DSM 7489] gi|324321617|gb|ADY29082.1| ribonuclease III [Cellulophaga lytica DSM 7489] Length = 246 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 104/220 (47%), Gaps = 30/220 (13%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ N S+ KA H S + ++ +YERLEFLGD +LG +IS L+N E Sbjct: 26 LGFKPKNISIYRKAFLHRSANKKDKDGNPLNYERLEFLGDSMLGTIISKYLYNEVPLGDE 85 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAAL 126 G L+ + +VS E +++ ++L+L ++ R+S F +I +V E+L+ A+ Sbjct: 86 GYLTKMRSKIVSREHLNELGKDLELIKYVESRISK------SHFGDNIHGNVFEALVGAI 139 Query: 127 YLDGGIE---------VAGTFVD-KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 YLD G + V G +VD + + R + K+ + EW K Y Sbjct: 140 YLDRGYQYCEKFINERVIGPYVDIEQLEGRVI-------SYKSLVIEWCQ-KQKKQFNYN 191 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 V +G D F V + I A+ SK+ AE+ A+ Sbjct: 192 VYEDTGNDTLKHFAVKLSIDNNVIAKARATSKKKAEEAAS 231 >gi|213691313|ref|YP_002321899.1| Ribonuclease III [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522774|gb|ACJ51521.1| Ribonuclease III [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457380|dbj|BAJ68001.1| ribonuclease III [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 242 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 101/206 (49%), Gaps = 13/206 (6%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH + +YERLEFLGD +L L+ + LF EG+L+ V Sbjct: 27 LLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHPDMTEGQLAKMRAKAV 86 Query: 80 SAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134 S + S +A+ +L + +I + + + SI D+VESLI A +L+ GI+ V Sbjct: 87 SEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLIGATFLEHGIDEARKV 146 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 +D + A + D KT L AH P Y + SGP++ FT V Sbjct: 147 LHRLIDDTLAEVATEGPAL--DWKTSLTVKAHGLGKEEPVYHMEV-SGPEYAQIFTARVS 203 Query: 195 I--SGLAPAQGMDCSKRAAEQVAAAE 218 + +G G SKR A Q+AAAE Sbjct: 204 LGENGDIIGIGKGSSKRKA-QLAAAE 228 >gi|305665924|ref|YP_003862211.1| putative ribonuclease III [Maribacter sp. HTCC2170] gi|88710699|gb|EAR02931.1| putative ribonuclease III [Maribacter sp. HTCC2170] Length = 245 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 22/220 (10%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 + K +G+ N + +KA H S + ++ +YERLEFLGD +LG +IS L+N Sbjct: 22 ITKILGFKPKNLKIFKKAFLHRSANRKDEDGNPMNYERLEFLGDAMLGTIISKHLYNEVP 81 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +VS E +++ ++L+L F+ + R F +I +V E+L+ Sbjct: 82 DGDEGYLTKMRSKIVSREHLNELGKDLNLIKFV----ESRIPKTHFGDNIHGNVFEALVG 137 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKS--------GKFRRDAKTELQEWAHAKFGVTPEYK 176 A+YLD G + +K+ +R + GK K+ + EW K + +Y Sbjct: 138 AIYLDRGY----NYCEKFIHERVILPYVDIEQLEGKV-ISYKSLVIEWCQ-KQKKSFKYN 191 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 V +G D F V + I A+ SK+ AE+ A+ Sbjct: 192 VYEDTGKDVLKHFAVKLSIGDNVVAKARATSKKKAEERAS 231 >gi|313768121|ref|YP_004061552.1| hypothetical protein BpV1_122 [Bathycoccus sp. RCC1105 virus BpV1] gi|312599728|gb|ADQ91749.1| hypothetical protein BpV1_122 [Bathycoccus sp. RCC1105 virus BpV1] Length = 242 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 12/217 (5%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++E +G L +KA H SI S S+E LEF+GD +LG +I+ LF+ + Sbjct: 6 QSVELLVGTKITKLDLYQKAFRHKSILKEDESLDGSFETLEFIGDSVLGFVITKFLFDRY 65 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 ++ +EG L+ LV ET + +A +L L +++++ ++ I DV E+L+ Sbjct: 66 ENRQEGFLTKARTKLVRGETLADIATKLGLYNWVQMDEKGMRNEWFKNPKILEDVFEALV 125 Query: 124 AALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 A+Y+D G+ A F+ + + S + K L PEY+V Sbjct: 126 GAIYMDLGLLHAKQFILNIYTNPEYVNMNSIMVDDNFKDHLMRHCQTNNLSLPEYRVL-- 183 Query: 181 SGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +H+ F + V + + +G +K+ AEQ AA Sbjct: 184 ---NHENGIFYIDVYVDNVFLGRGHAKNKKQAEQHAA 217 >gi|124026759|ref|YP_001015874.1| putative ribonuclease III [Prochlorococcus marinus str. NATL1A] gi|123961827|gb|ABM76610.1| putative ribonuclease III [Prochlorococcus marinus str. NATL1A] Length = 247 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 108/203 (53%), Gaps = 7/203 (3%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 + ++LTHSS + +YE LEFLGD +L L+ S + N + + GE S + LVS + Sbjct: 39 INESLTHSSANSEI--NYENLEFLGDAVLRLIASDFIKNKYPYMQVGERSELRSHLVSDQ 96 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI-EVAGTFVDK 141 +V +++++ + + + + +D + T IQA+ E+LI ALY + E ++ Sbjct: 97 WLEEVGKKIEIKNVLVIGNKALRDKSASAT-IQAEATEALIGALYESLTVLEPIKDWLIP 155 Query: 142 YWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVT-FRSGPDHDPRFTVVVEISGL 198 +W++++ + + +++ K+ LQE +K P YK T D+ RF V + Sbjct: 156 FWEEKSKEVLADPHKKNYKSALQELTQSKGLSIPIYKTTEIDKKHDNPERFFCNVYVKNR 215 Query: 199 APAQGMDCSKRAAEQVAAAEVLK 221 + A+G S + AE+ AA++ LK Sbjct: 216 SIAEGSGKSMKQAEKNAASKALK 238 >gi|222151066|ref|YP_002560220.1| ribonuclease III [Macrococcus caseolyticus JCSC5402] gi|222120189|dbj|BAH17524.1| ribonuclease III [Macrococcus caseolyticus JCSC5402] Length = 242 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 90/203 (44%), Gaps = 9/203 (4%) Query: 25 KALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +A +HSS + ++ + ERLEFLGD +L L++S L+ EG L+ ++V Sbjct: 34 QAFSHSSFINDFKLDKNKDNERLEFLGDAVLELMVSQYLYQQHRDLPEGRLTKLRAAIVC 93 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + A+ L I + K S+ ADV E+ + ALYLD G +V F + Sbjct: 94 EPSLVTFAKMLKFDQLILLGKGEEKTGGRTRPSLIADVFEAFVGALYLDQGHDVTKRFFN 153 Query: 141 KYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 Y L G D KT LQE+ H + Y++ GP H FT V + Sbjct: 154 SYIFPAITEDLLHGLI--DYKTCLQEYIHKTKNLQVTYRLVKEEGPAHFKAFTSEVYVED 211 Query: 198 LAPAQGMDCSKRAAEQVAAAEVL 220 G +K+ +EQ AA L Sbjct: 212 KVIGTGTGRTKKESEQQAAQTAL 234 >gi|261337990|ref|ZP_05965874.1| ribonuclease III [Bifidobacterium gallicum DSM 20093] gi|270277492|gb|EFA23346.1| ribonuclease III [Bifidobacterium gallicum DSM 20093] Length = 247 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 97/206 (47%), Gaps = 12/206 (5%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S SH +YERLEFLGD +L L+ + LF EGEL+ V Sbjct: 35 LLVEALTHRSFSHENPGTRNYERLEFLGDAVLELVATESLFTDHPDLSEGELAKMRAKAV 94 Query: 80 SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134 S E S+VARE L + +I + + + SI D+VESLI A +++ GIE V Sbjct: 95 SEEELSRVAREKLHVGPYILLGNGEAAQGGADKDSILCDIVESLIGATFVEHGIEGARPV 154 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVV 192 +D + + D KT L AH P +++ GP++ P + V+ Sbjct: 155 VHHLIDDVLAEMMTEGPAL--DWKTSLVIKAHELGMDEPHFRMAV-GGPEYAPEYHAQVL 211 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAE 218 + G SKR A+ AA E Sbjct: 212 IGDDDRVWGTGDGSSKRKAQLAAAHE 237 >gi|298491860|ref|YP_003722037.1| ribonuclease III ['Nostoc azollae' 0708] gi|298233778|gb|ADI64914.1| ribonuclease III ['Nostoc azollae' 0708] Length = 237 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 94/166 (56%), Gaps = 6/166 (3%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LL+ ALTH+++S S +YE+LEF+GD ++ L+ + +L+ H+ G+ + + LVS Sbjct: 30 PLLDLALTHATVSES--ANYEQLEFVGDAVVRLVAAVVLWEHYPYCSVGDFAAIRSVLVS 87 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFV 139 SQ+ARE L ++ V+ D + + AD E+++ ALYL +E+ ++ Sbjct: 88 DRILSQLAREYGLELYLLVAGSATADHVGQESRL-ADAFEAVLGALYLSTHNLELIRPWL 146 Query: 140 DKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 D ++++ + ++ R + K LQEW A+F + PEY+V + P Sbjct: 147 DPHFQELTKEIRLDPARLNYKAALQEWTQAQFKILPEYRVMEVNQP 192 >gi|195332283|ref|XP_002032828.1| GM20991 [Drosophila sechellia] gi|194124798|gb|EDW46841.1| GM20991 [Drosophila sechellia] Length = 1310 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 108/225 (48%), Gaps = 14/225 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E IG F + LL +A T SI +H S +RLEFLGD +L L+ S L+ HF Sbjct: 960 TKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1019 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS+ +SLV+ T + V +L + F V ++ + D+ T +AD++E+ + Sbjct: 1020 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKFA-VYANPKADL---KTKDRADLLEAFLG 1075 Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE---YK 176 ALY+D G+ F V + + + + D K++LQ+ G P+ YK Sbjct: 1076 ALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1135 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V SGP + + V V A S + AE AA + L+ Sbjct: 1136 VVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALE 1180 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S+I+H+ ERLEFLGD ++ L S LF F +EG L+ ++V + + + Sbjct: 809 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 863 Query: 88 ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144 A++L L F+ + D+C + A+ E+L+ AL LDGGI+VA F D ++ Sbjct: 864 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 921 Query: 145 Q 145 Q Sbjct: 922 Q 922 >gi|195581370|ref|XP_002080507.1| GD10519 [Drosophila simulans] gi|194192516|gb|EDX06092.1| GD10519 [Drosophila simulans] Length = 1310 Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 14/225 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E IG F + LL +A T SI +H S +RLEFLGD +L L+ S L+ HF Sbjct: 960 TKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1019 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS+ +SLV+ T + V +L + + V ++ + D+ T +AD++E+ + Sbjct: 1020 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYA-VYANPKADL---KTKDRADLLEAFLG 1075 Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEYK 176 ALY+D G+ F V + + + + D K++LQ+ + P YK Sbjct: 1076 ALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1135 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V SGP + + V V A S + AE AA + L+ Sbjct: 1136 VVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALE 1180 Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S+I+H+ ERLEFLGD ++ L S LF F +EG L+ ++V + + + Sbjct: 809 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 863 Query: 88 ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144 A++L L F+ + D+C + A+ E+L+ AL LDGGI+VA F D ++ Sbjct: 864 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 921 Query: 145 Q 145 Q Sbjct: 922 Q 922 >gi|300770264|ref|ZP_07080143.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33861] gi|300762740|gb|EFK59557.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33861] Length = 229 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 23/222 (10%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L+ +G+ N L + A H S++ + +E S ERLEFLGD ILG +++ LLF + Sbjct: 4 LKNLLGFVPENIRLYQMAFRHKSVATAIKEGAKNSNERLEFLGDAILGSVVAELLFKKYP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQADVVES 121 EG L+ + +VS +Q++R+L L I+ + + SF S+ D E+ Sbjct: 64 YKDEGFLTEMRSKIVSRANLNQLSRKLGLNELIQYDARM----ISFPNKQGSLLGDAFEA 119 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-------KFRRDAKTELQEWAHAKFGVTPE 174 L+ A+YLD G TF + R +K+ + K+ L EW G + Sbjct: 120 LVGAVYLDKGY----TFTKSFLLNRIIKTHVDIQLLEVTETNFKSRLIEWCQ-HLGKDVQ 174 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + T + F++ + G G D +K++AE++AA Sbjct: 175 FLPTANPEGESSKMFSIEAIVEGEVCGIGRDFNKKSAEKLAA 216 >gi|255037664|ref|YP_003088285.1| ribonuclease III [Dyadobacter fermentans DSM 18053] gi|254950420|gb|ACT95120.1| ribonuclease III [Dyadobacter fermentans DSM 18053] Length = 248 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 10/213 (4%) Query: 13 IGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 IG +N + + A H+S S ++ES ERLE+LGD +LG++++ LF + Sbjct: 31 IGDKPSNLGVYQLAFRHTSASRETAIKGFRESNERLEYLGDAVLGMVVAEFLFTKYPYKD 90 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ + +V+ E+ +Q++R+L L I + R S +S+ D +E+ + A+Y Sbjct: 91 EGFLTEIRSRIVNRESLNQISRKLGLDRLIEYDGNRRG--MSPRSSMYGDALEAFVGAIY 148 Query: 128 LDGGIEVAGTF-VDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD G TF + K L S + + K+ + EWA + G +++ G H Sbjct: 149 LDKGFRFTRTFIISKLITHYDLDSIIQNNVNFKSLIIEWAQRE-GKEIRFEILEERGTRH 207 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 F + ++ A G +K+ AEQ A+ + Sbjct: 208 HREFISQILVNDEPFAIGNGFTKKKAEQSASEQ 240 >gi|33864688|ref|NP_896247.1| putative ribonuclease III [Synechococcus sp. WH 8102] gi|33632211|emb|CAE06667.1| putative ribonuclease III [Synechococcus sp. WH 8102] Length = 238 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 105/210 (50%), Gaps = 11/210 (5%) Query: 8 TLEKRIGYA-FANRSLL---EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 +L KR+G + SLL E+A+TH+S + + ERLEFLGD +L L + L H Sbjct: 11 SLIKRLGLEDMDSPSLLLEVERAMTHTSSGRT--DHNERLEFLGDAVLRLAATLYLDRHH 68 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 G+ S LVS +++ +D+ S + + D + T+I+AD E+LI Sbjct: 69 PGLTVGDSSSLRAQLVSDRWLAELGEAIDIESCLILGVKALGDAAA-RTTIRADATEALI 127 Query: 124 AALY-LDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ALY + G +E ++ +W++ + + + R + KT LQEW+ + PEY R Sbjct: 128 GALYKVSGSLEPILGWLTPHWQRTSADVLAAPHRFNGKTTLQEWSQGQGLGLPEYSTEER 187 Query: 181 SGPDHDP-RFTVVVEISGLAPAQGMDCSKR 209 S DP RF V ++ A+G S++ Sbjct: 188 SQVHGDPQRFRSTVRVASKVLAEGHGRSRK 217 >gi|282896739|ref|ZP_06304747.1| Ribonuclease III [Raphidiopsis brookii D9] gi|281198457|gb|EFA73345.1| Ribonuclease III [Raphidiopsis brookii D9] Length = 276 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 10/196 (5%) Query: 17 FANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F + LL +ALTH S ++ S + ERLEFLGD IL + L++ + E EL+ Sbjct: 56 FEDEKLLRQALTHRSYANENPSEGDHNERLEFLGDAILNFISGEYLYSRYPQKGEDELTR 115 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG--G 131 R ++LV + ++ A E+ L +R+ +D ++ + E++I A YLD Sbjct: 116 RRSALVEEKQLAKFALEVGLNVKMRLGKGTIQDGGYQNPNLLSSTFEAIIGAYYLDNNCN 175 Query: 132 IEVAGTFVDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTFRSGPDHDP 187 IE V+ + Q ++S ++ D+K QEW K P+YK G H P Sbjct: 176 IEAVKLAVEPLFDFVSQHTIES-RYNVDSKNRFQEWVQKKLCANPPKYKTQQIGGSPHLP 234 Query: 188 RFTVVVEISGLAPAQG 203 F V + G QG Sbjct: 235 EFFSRVLVDGKEFGQG 250 >gi|300727555|ref|ZP_07060946.1| ribonuclease III [Prevotella bryantii B14] gi|299775258|gb|EFI71859.1| ribonuclease III [Prevotella bryantii B14] Length = 360 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 21/228 (9%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 S+L +G+ + L ++AL H SI H + + ERLEFLGD IL ++ +++ H Sbjct: 21 SSLYDILGFYPHDIKLYKQALMHKSIMHRNSKGKPVNNERLEFLGDAILDAIVGDIVYQH 80 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F +EG L+ + LV +T +++A+E+ + I + S + + + E+L Sbjct: 81 FPGKREGFLTNTRSKLVQRDTLNKLAQEMGITQLILSNG----HSSSHNSYVGGNAFEAL 136 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTF 179 + A+YLD G F+ + + K + K++L EW+ K++F Sbjct: 137 VGAVYLDRGYNACMNFMQNRILAKMINIDKVAYKEVNFKSKLIEWSQKN-----RVKLSF 191 Query: 180 R-SGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +G D D P F+ V I + A+G SK+ ++Q+A+ L + Sbjct: 192 EMTGQDKDKNGSPIFSYKVVIENIDGAEGKGYSKKESQQIASKGTLDK 239 >gi|220905831|ref|YP_002481142.1| Ribonuclease III [Cyanothece sp. PCC 7425] gi|219862442|gb|ACL42781.1| Ribonuclease III [Cyanothece sp. PCC 7425] Length = 238 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 88/185 (47%), Gaps = 6/185 (3%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL+ ALTH + S Q +YE+LEF GD + L ++ L + GE + + LVS Sbjct: 31 LLDLALTHPTFSP--QANYEQLEFFGDAVARLTVAQFLRQTYPDRSVGEWTAIRSVLVSD 88 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVD 140 T + + L F+ + S D S TS AD +E+L+AALYL + ++D Sbjct: 89 RTLATIGDSYGLERFLLMGSSAAAD-ASGQTSRLADAMEALLAALYLSTSDFRLIHPWLD 147 Query: 141 KYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 ++W+ A+ + ++ K LQ W A PEY+V + RF V + G+ Sbjct: 148 RHWQPLAEAILNDPAHQNYKAALQTWTQATSRTLPEYRVQEIQQASPEERFQAEVWVQGV 207 Query: 199 APAQG 203 QG Sbjct: 208 LLGQG 212 >gi|312890952|ref|ZP_07750480.1| ribonuclease III [Mucilaginibacter paludis DSM 18603] gi|311296568|gb|EFQ73709.1| ribonuclease III [Mucilaginibacter paludis DSM 18603] Length = 241 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 107/221 (48%), Gaps = 22/221 (9%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L+ +G+ N SL A H S++ + ++ S ERLEFLGD ILG +++ +LF + Sbjct: 21 LKNLLGFVPGNLSLYRLAFRHKSVAQNVKKGVKNSNERLEFLGDAILGCVVAEVLFKLYP 80 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +VS +Q+AR+L I S R + S+ D E+L+ Sbjct: 81 YEDEGFLTELRSKIVSRVNLNQLARKLGFEQLIEYDS--RMVGSTRQGSLLGDAFEALVG 138 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWA--HAKFGVTPEYKVTF 179 A+YLD G + F+ + + + K + + K++L EW H+K V+F Sbjct: 139 AVYLDKGYDFTKNFLVNHIIKSHIDIHKLEQTESNFKSKLIEWCQRHSK-------DVSF 191 Query: 180 ---RSGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + P+ FT+ I G G + +K+ AE++AA Sbjct: 192 DLVENKEGESPKLFTIQASIDGEVLGVGKEFNKKNAEKLAA 232 >gi|15291861|gb|AAK93199.1| LD29995p [Drosophila melanogaster] Length = 1071 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 14/225 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E IG F + LL +A T SI +H S +RLEFLGD +L L+ S L+ HF Sbjct: 720 TKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 779 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS+ +SLV+ T + V +L + + V ++ + D+ T +AD++E+ + Sbjct: 780 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYA-VYANPKADL---KTKDRADLLEAFLG 835 Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEYK 176 ALY+D G+ F V + + + + D K++LQ+ + P YK Sbjct: 836 ALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 895 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V SGP + + V V A S + AE AA + L+ Sbjct: 896 VVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALE 940 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S+I+H+ ERLEFLGD ++ L S LF F +EG L+ ++V + + + Sbjct: 569 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 623 Query: 88 ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144 A++L L F+ + D+C + A+ E+L+ AL LDGGI+VA F D ++ Sbjct: 624 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 681 Query: 145 Q 145 Q Sbjct: 682 Q 682 >gi|56752450|ref|YP_173151.1| ribonuclease III [Synechococcus elongatus PCC 6301] gi|81300454|ref|YP_400662.1| RNAse III [Synechococcus elongatus PCC 7942] gi|56687409|dbj|BAD80631.1| ribonuclease III [Synechococcus elongatus PCC 6301] gi|81169335|gb|ABB57675.1| RNAse III [Synechococcus elongatus PCC 7942] Length = 247 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 7/168 (4%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +++ALTH S + ++ Y+RLEFLGD +L L I+ L H+ G+ S + L S Sbjct: 40 IDRALTHPSAA---EDHYDRLEFLGDAVLRLAIADFLDRHYPDLSVGDCSALRSELGSDR 96 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFVDK 141 T + +A +L +RV D + + A+ E+L+ ALYL ++ +++D Sbjct: 97 TLAAIAASYNLERVLRVGKTAANDRAGQQSRL-AEAFEALLGALYLSQRNLDPIRSWLDP 155 Query: 142 YWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 + +QR A+ R + K LQEW ++ PEY+ RS DP Sbjct: 156 HLQQRATAMLQDPTRGNYKAALQEWTLQRYQELPEYRTEQRSDACGDP 203 >gi|212550552|ref|YP_002308869.1| ribonuclease III [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|229564347|sp|B6YQI6|RNC_AZOPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|212548790|dbj|BAG83458.1| ribonuclease III [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 261 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 22/223 (9%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLF 60 Y L + +G+ N S+ EKAL H S S YQ + ERLEFLGD I +I+ +L+ Sbjct: 20 YFALYRMLGFPPKNFSIYEKALLHKSSSKRDENGCYQNN-ERLEFLGDAIFNAIIAVILY 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + EG L+ + +V +T ++A +L + I +S+ ++ I + +E Sbjct: 79 KKFPTNDEGFLTNTRSKIVKRDTLDKIAYQLGINHLIMISAKVKNH-----KHIMGNTLE 133 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWAHAKFGVTPEYKV 177 + I A+YLD G FV+K + R+ K++L EW K + +++ Sbjct: 134 AFIGAIYLDKGYLKTKEFVEKRIINPYIDIDTLVREEVNFKSKLFEWCQ-KHKILLQFQ- 191 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQ----GMDCSKRAAEQVAA 216 T + D++ VV +I L G+ SKR ++Q A+ Sbjct: 192 TLENFTDNNR--NVVFQIQALLNNHIAGIGIGYSKRESQQHAS 232 >gi|299142079|ref|ZP_07035213.1| ribonuclease 3 [Prevotella oris C735] gi|298576541|gb|EFI48413.1| ribonuclease 3 [Prevotella oris C735] Length = 363 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 15/226 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 YS+L +G+ N S + AL H SI + + ERLEFLGD IL ++ +++ Sbjct: 20 YSSLYAILGFYPRNISYYKLALMHKSIMRRNAKGKPVNNERLEFLGDAILDAIVGDIVYQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV +T +++A EL ++ I +S+ S+M + E+ Sbjct: 80 HFPGKREGFLTNTRSKLVQRDTLNKLANELGISKLI-LSNGRSSSHNSYMG---GNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G + F+ + + K + K++L EW+ K V ++++ Sbjct: 136 LVGAVYLDRGYDACMNFMQHRILTQMINIDKVAYKEVNFKSKLIEWSQ-KNRVKLDFEI- 193 Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G D + P F V I G+ G+ SK+ ++Q+A L++ Sbjct: 194 LEQGKDKNGSPIFNYKVVIEGIDGCDGVGYSKKESQQLACKLTLEQ 239 >gi|198459728|ref|XP_001361471.2| GA21287 [Drosophila pseudoobscura pseudoobscura] gi|198136788|gb|EAL26049.2| GA21287 [Drosophila pseudoobscura pseudoobscura] Length = 1292 Score = 75.1 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 107/225 (47%), Gaps = 14/225 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E IG F + LL +A T SI +H S +RLEFLGD +L L+ S L+ HF Sbjct: 941 TKFEDSIGLKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLISSEYLYRHFP 1000 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS+ +SLV+ T + V +L + + V ++ + D+ T +AD++E+ + Sbjct: 1001 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMTKYA-VYANPKADL---KTKDRADLLEAFLG 1056 Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEYK 176 +LY+D G+ F V + + + + D K++LQ+ + P YK Sbjct: 1057 SLYVDKGLLFCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1116 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V SGP + + V V A S + AE AA + L+ Sbjct: 1117 VVEASGPTNTRVYKVAVYFRSKRLATSSGASIQQAEMNAAKQALE 1161 Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S+I+H+ ERLEFLGD ++ L S LF F +EG L+ ++V + + + Sbjct: 790 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 844 Query: 88 ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVA 135 A++L L F+ + D+C + A+ E+L+ AL LDGGI+VA Sbjct: 845 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVA 892 >gi|134102537|ref|YP_001108198.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338] gi|291007096|ref|ZP_06565069.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338] gi|133915160|emb|CAM05273.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338] Length = 236 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 68/191 (35%), Positives = 96/191 (50%), Gaps = 12/191 (6%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S ++ ERLEFLGD +LGL+I+ L+N EG+L+ S+V Sbjct: 12 LLTLALTHRSYAYENGGLPPNERLEFLGDAVLGLVITDRLYNEHPDLPEGQLAKLRASVV 71 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVAG 136 + + VAR L R + + SI AD +E+++ A+YL GI+VA Sbjct: 72 NMHALAGVARGLGEGGLGEYLLLGRGEELTGGRDKASILADGLEAVLGAVYLQDGIDVAR 131 Query: 137 TFVDKYWKQ---RALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 + + ++ A + G D KT LQE A A GV PEY+V GPDH F+ Sbjct: 132 DVIHRLFEPLLTEAPQRGAG-LDWKTSLQELTAAAALGV-PEYRVE-EQGPDHRKEFSAY 188 Query: 193 VEISGLAPAQG 203 V ++G QG Sbjct: 189 VSVAGDTLGQG 199 >gi|242021933|ref|XP_002431397.1| ribonuclease III, putative [Pediculus humanus corporis] gi|212516673|gb|EEB18659.1| ribonuclease III, putative [Pediculus humanus corporis] Length = 1410 Score = 75.1 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 14/228 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + E+ G F + LL +A T S+ ++ S +RLEFLGD +L L+ S L+ +F Sbjct: 1152 TKFEEATGIEFKHIRLLARAFTDRSVGYTNLTLGSNQRLEFLGDSVLQLIASEYLYKYFP 1211 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS+ +SLV+ +T S V +L + + ++ +AD++E+ + Sbjct: 1212 EHHEGHLSLLRSSLVNNKTQSVVCDDLGMTQYAVYAN----PKVELKVKDRADLLEAFLG 1267 Query: 125 ALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE---YK 176 ALY+D G+++ F D + + + + D K++LQ+ V P+ YK Sbjct: 1268 ALYVDNGLDICRVFCDVCFFPRLQIFIMNQDWNDPKSKLQQCCLTLRTMDNVEPDIPIYK 1327 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V GP + +TV V A+ S + AE AA + ++ G Sbjct: 1328 VVECKGPTNTRVYTVAVYFRNKRLAKATGHSIQQAEMNAAQKAMEVSG 1375 Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 9/113 (7%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 K T S+I H+ ERLEFLGD ++ + S LF+ F +EG L+ +LV + Sbjct: 998 KNETQSNIYHN-----ERLEFLGDAVVEFITSIHLFHIFRDLEEGGLATYRAALVQNQHL 1052 Query: 85 SQVARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 S +A++L+L F+ + SDL D+ + A+ E+L+ AL+LDGGIE A Sbjct: 1053 SVLAKKLNLDEFMLYAHGSDLCHDL--ELKHAMANCFEALMGALFLDGGIESA 1103 >gi|225159274|ref|ZP_03725574.1| Ribonuclease III [Opitutaceae bacterium TAV2] gi|224802127|gb|EEG20399.1| Ribonuclease III [Opitutaceae bacterium TAV2] Length = 250 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 3/130 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L+ RIG+ F +LLE A+TH S + ++ +RLE LGD +L LL++ L+ F Sbjct: 22 AALQMRIGHKFTTPALLETAITHPSWLQDNPGAPDNNQRLELLGDAVLQLLLTHELYTLF 81 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + +EG LS R L +Q+ARE+ L + +R+S+ + S D E+L Sbjct: 82 PTDREGPLSKRRAVLSRGGFLAQLAREVGLDTVLRLSASEEQTGGRQRDSALEDAFEALF 141 Query: 124 AALYLDGGIE 133 ALYLD G++ Sbjct: 142 GALYLDAGLD 151 >gi|119510841|ref|ZP_01629966.1| Ribonuclease III [Nodularia spumigena CCY9414] gi|119464520|gb|EAW45432.1| Ribonuclease III [Nodularia spumigena CCY9414] Length = 239 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 6/160 (3%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL+ ALTH ++S S +YE+LEF+GD ++ L + +L+ + G+ + + LVS Sbjct: 31 LLDLALTHPTVSES--ANYEQLEFVGDAVVRLAAAVVLWETYPDCPVGDFAAIRSVLVSD 88 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVD 140 +Q+ARE L ++ V+ D + + AD E+++ ALYL +E+ ++D Sbjct: 89 RILAQLAREYSLQLYLLVAGSATSDKIGLESRL-ADAFEAVLGALYLSTNNLELIRPWLD 147 Query: 141 KYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + K+ A ++ R + K LQEW A+F V PEY+VT Sbjct: 148 FHLKKLATEIRLDPARLNYKAALQEWTQAEFKVLPEYRVT 187 >gi|13508284|ref|NP_110234.1| ribonuclease III [Mycoplasma pneumoniae M129] gi|2500551|sp|P75233|RNC_MYCPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|1673968|gb|AAB95945.1| ribonuclease III [Mycoplasma pneumoniae M129] gi|301633525|gb|ADK87079.1| ribonuclease III [Mycoplasma pneumoniae FH] Length = 282 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 72/127 (56%), Gaps = 8/127 (6%) Query: 19 NRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 N E A HSS + ++ SY+RLEFLGD ++ +++ LF + + EG L+ Sbjct: 31 NWQFYEDAFVHSSYVNENEDARASYDRLEFLGDALIDFIVAKKLFELYPNYNEGMLTRTK 90 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 +V E +++ +EL+ +FI++ + + ++ DV+E+L+AA+Y D GIE A Sbjct: 91 IEIVKGENLNRIGKELNFGNFIKLGKGM-----PYTETLFGDVLEALVAAIYEDLGIEKA 145 Query: 136 GTFVDKY 142 FV+++ Sbjct: 146 NQFVEEH 152 >gi|330982653|gb|EGH80756.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 176 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 85/170 (50%), Gaps = 3/170 (1%) Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF A+EG+LS LV ET + +AR DL ++R+ S K SI AD Sbjct: 2 LFERSPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADA 61 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 +E+LI A+YLD G+E A V + +L +D KT LQE+ ++ P Y+ Sbjct: 62 LEALIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYE 121 Query: 177 VTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 V G H F V EI+ L ++G S+R AEQVAAA L G+ Sbjct: 122 VVDIQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQVAAAAALIALGV 171 >gi|195026766|ref|XP_001986330.1| GH21300 [Drosophila grimshawi] gi|193902330|gb|EDW01197.1| GH21300 [Drosophila grimshawi] Length = 1324 Score = 74.7 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 14/225 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +G F + LL +A T SI +H S +RLEFLGD +L L+ S L+ HF Sbjct: 968 TKFEDSVGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1027 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS+ +SLV+ T + V +L + + V ++ + D+ T +AD++E+ + Sbjct: 1028 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPQYA-VYANPKADL---KTKDRADLLEAFLG 1083 Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEYK 176 ALY+D G+ F V + + + + D K++LQ+ + P YK Sbjct: 1084 ALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1143 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V +GP + + V V A S + AE AA + L+ Sbjct: 1144 VVEATGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALE 1188 Score = 48.9 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S+I+H+ ERLEFLGD ++ L S LF F +EG L+ ++V + + + Sbjct: 817 TLSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 871 Query: 88 ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144 A++L L F+ + D+C + A+ E+L+ AL LDGGI+VA F D ++ Sbjct: 872 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 929 Query: 145 Q 145 Q Sbjct: 930 Q 930 >gi|281424694|ref|ZP_06255607.1| ribonuclease III [Prevotella oris F0302] gi|281401064|gb|EFB31895.1| ribonuclease III [Prevotella oris F0302] Length = 363 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 15/226 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 YS+L +G+ N S + AL H SI + + ERLEFLGD IL ++ +++ Sbjct: 20 YSSLYAILGFYPRNISYYKLALMHKSIMRRNAKGKPVNNERLEFLGDAILDAIVGDIVYQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV +T +++A EL ++ I +S+ S+M + E+ Sbjct: 80 HFPGKREGFLTNTRSKLVQRDTLNKLANELGISKLI-LSNGRSSSHNSYMG---GNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G + F+ + + K + K++L EW+ K V +++ Sbjct: 136 LVGAVYLDRGYDACMNFMQHRILTQMINIDKVAYKEVNFKSKLIEWSQ-KNRVKLNFEI- 193 Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G D + P F V I G+ G+ SK+ ++Q+A L++ Sbjct: 194 LEQGKDKNGSPIFNYKVVIEGIDGCDGVGYSKKESQQLACKLTLEQ 239 >gi|195402669|ref|XP_002059927.1| GJ15113 [Drosophila virilis] gi|194140793|gb|EDW57264.1| GJ15113 [Drosophila virilis] Length = 1306 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 14/225 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E IG F + LL +A T SI +H S +RLEFLGD +L L+ S L+ HF Sbjct: 957 TKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1016 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS+ +SLV+ T + V +L + + V ++ + D+ T +AD++E+ + Sbjct: 1017 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYA-VYANPKADL---KTKDRADLLEAFLG 1072 Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEYK 176 ALY+D G+ F V + + + + D K++LQ+ + P YK Sbjct: 1073 ALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1132 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V SGP + + V V A S + AE AA + L+ Sbjct: 1133 VVEASGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALE 1177 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S+I+H+ ERLEFLGD ++ L S LF F +EG L+ ++V + + + Sbjct: 806 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 860 Query: 88 ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144 A++L L F+ + D+C + A+ E+L+ AL LDGGI+VA F D ++ Sbjct: 861 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 918 Query: 145 Q 145 Q Sbjct: 919 Q 919 >gi|284039991|ref|YP_003389921.1| ribonuclease III [Spirosoma linguale DSM 74] gi|283819284|gb|ADB41122.1| ribonuclease III [Spirosoma linguale DSM 74] Length = 253 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 17/203 (8%) Query: 13 IGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 IG +N L + AL H+S S + ++ES ERLE+LGD +LG++I+ LF + Sbjct: 35 IGARPSNLGLYQLALRHTSASKATAIEGFRESNERLEYLGDAVLGMVIAEFLFKKYPYKD 94 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ + +V+ ET + +AR++ L I + + + TS+ D +E+L+ A+Y Sbjct: 95 EGFLTEIRSRIVNRETLNGIARKIGLDQLIEYDGSRTRSLPA-RTSMYGDALEALVGAVY 153 Query: 128 LDGGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 LD G + F+ K Y + +++ + K+ L EWA + G +++ G Sbjct: 154 LDKGFRFSRRFILKDLLAHYDIESVVQNNG---NYKSRLIEWAQRE-GKEIRFEIVSEKG 209 Query: 183 PDHDPRFT--VVVEISGLAPAQG 203 H F VV++ A G Sbjct: 210 NSHFREFISQVVIDDEPFATGSG 232 >gi|298492780|ref|YP_003722957.1| ribonuclease III ['Nostoc azollae' 0708] gi|298234698|gb|ADI65834.1| ribonuclease III ['Nostoc azollae' 0708] Length = 227 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 8/190 (4%) Query: 16 AFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F LL +ALTH S + E ERLEFLGD IL + L+ + E EL+ Sbjct: 6 TFNREKLLCQALTHRSYVNENPGEGEHNERLEFLGDAILNFISGQYLYRRYPQKGEDELT 65 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 R ++LV + ++ A E+ L +R+ +D ++ + E++I A YLD Sbjct: 66 RRRSALVEEKQLAKFAIEVGLDFRMRLGKGAIRDGGFQNPNLLSSTFEAVIGAYYLDNNC 125 Query: 133 EVAG--TFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR-SGPDHDP 187 EV T ++ + + + + D+K QEW + G P VT + GP H P Sbjct: 126 EVEPIRTIIEPLFDSVSEDIIEPRSNVDSKNRFQEWVQKEIGANPPKYVTEQIGGPSHAP 185 Query: 188 RFTVVVEISG 197 F V + G Sbjct: 186 EFIARVLVDG 195 >gi|260061436|ref|YP_003194516.1| putative ribonuclease III [Robiginitalea biformata HTCC2501] gi|88785568|gb|EAR16737.1| putative ribonuclease III [Robiginitalea biformata HTCC2501] Length = 245 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 105/213 (49%), Gaps = 16/213 (7%) Query: 13 IGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ + + ++A H S++ + + +YERLEFLGD +LG +IS L+N + E Sbjct: 26 LGFKPKSLEVYKRAFLHRSVNKKDKNGHPMNYERLEFLGDSMLGTIISKHLYNEVPAGDE 85 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +VS + +++ ++L L +F+ + R F +I +V E+L+ A+YL Sbjct: 86 GYLTKMRSKIVSRKHLNELGKDLGLLNFV----ESRIPKAHFGENIHGNVFEALVGAIYL 141 Query: 129 DGGIEVAGTF-----VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 D G + F ++ Y L+ K+ + EW K E++V +G Sbjct: 142 DRGYKYCEKFIQSRVIEPYVDIEQLEGQVI--SYKSLVIEWCQ-KQKKEFEFEVYEDTGN 198 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 D F V + I G A+ SK+ AE+ A+ Sbjct: 199 DPVKHFAVKLHIDGRILAKARATSKKKAEEKAS 231 >gi|188995567|ref|YP_001929819.1| putative ribonuclease III [Porphyromonas gingivalis ATCC 33277] gi|188595247|dbj|BAG34222.1| putative ribonuclease III [Porphyromonas gingivalis ATCC 33277] Length = 261 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 14/218 (6%) Query: 13 IGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ + + E A HSS S Y+ + ERLEFLGD +L IS L+ E Sbjct: 30 LGFKPSRIAFYELAFRHSSCSLVDDEGYRLNNERLEFLGDSVLATAISGYLYRQHPHWDE 89 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S R +++V + + VA++L L F+ V R ++ + I + +E+LI A+YL Sbjct: 90 GDMSQRRSAIVKRQINNVVAKKLRLDRFLIV----RGEISQMSSDIMGNTLEALIGAIYL 145 Query: 129 DGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D G + A FV + + + K+ L EWA K + E+++ Sbjct: 146 DKGYQAAEKFVLTRFIPVFHELEDSLTDTTTNYKSLLLEWAQ-KHHLNLEFRLISEPKRA 204 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H F V + G G+ +K+ A Q AA + L++ Sbjct: 205 HG-HFNYAVFVDGHRIGSGIGMNKKEAHQNAAHDALEK 241 >gi|91215536|ref|ZP_01252507.1| putative ribonuclease III [Psychroflexus torquis ATCC 700755] gi|91186488|gb|EAS72860.1| putative ribonuclease III [Psychroflexus torquis ATCC 700755] Length = 245 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 12/222 (5%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 + + + +++ I + S+ ++A THSS+ E SYERLEFLGD ILG +IST Sbjct: 16 NGIFFKKIQRIIKVKHKSLSIYKQAFTHSSLKLKDDEGKFISYERLEFLGDSILGAVIST 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF + EG L+ + +VS + + + DLA + K +I + Sbjct: 76 YLFENAPHGDEGYLTKMRSKIVSRKNLNLLGESFDLADLTLSEIPVEK----MGKNINGN 131 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWAHAKFGVTPE 174 + E+LI A+Y+D G + F+ K + + K + K+ + EW K E Sbjct: 132 LFEALIGAIYVDKGFKDCEAFIYKKVIREDVDLAKLEKRVMSYKSLMIEWCQ-KNKFPFE 190 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + + G D + F V + I+ + + SK+ AE+ A+ Sbjct: 191 FVIEDDFGKDEEKHFAVKLIINNEISGKARETSKKRAEEKAS 232 >gi|282877263|ref|ZP_06286095.1| RNase3 domain protein [Prevotella buccalis ATCC 35310] gi|281300604|gb|EFA92941.1| RNase3 domain protein [Prevotella buccalis ATCC 35310] Length = 350 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 18/230 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 YS+L + IG+ + S + AL H S+ + + ERLEFLGD IL + +++ Sbjct: 20 YSSLYRIIGFYPHDISYYKLALMHKSVMRRNAKGKPVNNERLEFLGDAILDATVGHIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV T +++A E+ + I +SS S+M + E+ Sbjct: 80 HFPGKREGFLTNTRSKLVQRSTLNKLANEMGICKLI-LSSGRNASHNSYMG---GNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G + F+ + L K + K++L EW+ K V +K+ Sbjct: 136 LVGAIYLDRGYDACMRFMKDRILKEMLNIDKVAYKEVNFKSKLIEWSQ-KNKVKINFKL- 193 Query: 179 FRSGPDH--DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223 G D +P F E+ G+ G SK+ ++Q+A+ E LKR+ Sbjct: 194 LNQGQDKNGNPVFKYAAELEGIEGCSGEGFSKKESQQLASKLTLEQLKRK 243 >gi|226528435|ref|NP_001141713.1| hypothetical protein LOC100273842 [Zea mays] gi|194705648|gb|ACF86908.1| unknown [Zea mays] Length = 329 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 19/152 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58 MSA + +E +GY F ++SL+E ALTH S + ++YERLE+LGD +L L+S Sbjct: 43 MSAKDVTAIEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSRE 102 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ-- 115 +F + + + G L+ + V E ++VA L F+R + L+ +C F+ ++ Sbjct: 103 VFRTYRTLQPGPLTRLRAANVDTEKLARVAVHRGLHRFLRHKAPKLQDQICFFIEEMRKY 162 Query: 116 --------------ADVVESLIAALYLDGGIE 133 D+VESLI A+YLD + Sbjct: 163 PVHSNGLLDPPKVLCDIVESLIGAIYLDSNFD 194 >gi|17137682|ref|NP_477436.1| drosha [Drosophila melanogaster] gi|4868118|gb|AAD31170.1| ribonuclease [Drosophila melanogaster] gi|7304132|gb|AAF59169.1| drosha [Drosophila melanogaster] gi|68051279|gb|AAY84903.1| LD20030p [Drosophila melanogaster] Length = 1327 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 14/225 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E IG F + LL +A T SI +H S +RLEFLGD +L L+ S L+ HF Sbjct: 976 TKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1035 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS+ +SLV+ T + V +L + + V ++ + D+ T +AD++E+ + Sbjct: 1036 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYA-VYANPKADL---KTKDRADLLEAFLG 1091 Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE---YK 176 ALY+D G+ F V + + + + D K++LQ+ G P+ YK Sbjct: 1092 ALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1151 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V SGP + + V V A S + AE AA + L+ Sbjct: 1152 VVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALE 1196 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S+I+H+ ERLEFLGD ++ L S LF F +EG L+ ++V + + + Sbjct: 825 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 879 Query: 88 ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144 A++L L F+ + D+C + A+ E+L+ AL LDGGI+VA F D ++ Sbjct: 880 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 937 Query: 145 Q 145 Q Sbjct: 938 Q 938 >gi|228470695|ref|ZP_04055546.1| ribonuclease III [Porphyromonas uenonis 60-3] gi|228307552|gb|EEK16548.1| ribonuclease III [Porphyromonas uenonis 60-3] Length = 243 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 105/224 (46%), Gaps = 16/224 (7%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNH 62 ++L RIG L A+ H S + + + ERLEFLGD +L I T L++ Sbjct: 13 TSLFDRIGIVPVRTDLYLLAMRHRSCTIIGEGGEKLNNERLEFLGDAVLEASICTYLYHL 72 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFMTSIQADVVES 121 + EG+LS +SLVS ++V R L L + I V S L V I + VE+ Sbjct: 73 HPTWDEGDLSKCKSSLVSRPVNNEVGRRLHLERYIIMVPSALDNSV-----DIYGNTVEA 127 Query: 122 LIAALYLDGGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 LI A+YLD G FV Y ++ + ++ K+EL EW K ++ E+++ Sbjct: 128 LIGAIYLDQGYARTQDFVRDYILPTYRDMREHTVASIQNYKSELIEWVQ-KHHLSHEFRL 186 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 HD F V I G +G SK+ A+Q AA + L+ Sbjct: 187 EEHQTMPHD-HFIYSVWIDGKPVGRGAGSSKKRAQQEAARDTLE 229 >gi|148241236|ref|YP_001226393.1| ribonuclease III [Synechococcus sp. RCC307] gi|147849546|emb|CAK27040.1| Ribonuclease III [Synechococcus sp. RCC307] Length = 236 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 11/208 (5%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L ALTH+S + ++E LEFLGD +L L + L + GE S LVS Sbjct: 25 LHTALTHTSAG--LEVNHEELEFLGDAVLRLACAEFLEENNSKLSVGERSAFRAQLVSDR 82 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL-----DGGIEVAGT 137 +++A EL L I+ S D + +++A+ E+L+ A+YL DGG+ Sbjct: 83 WLAELAAELQLDGLIKQGSATAADT-TARATVRAECCEALVGAVYLAWGGADGGLHAVRQ 141 Query: 138 FVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVE 194 ++D W++ L+ R + K+ LQE A+ P Y T + D RF VV Sbjct: 142 WLDPQWQRSCLELAEDPHRHNWKSALQELTQAQQAGLPSYSTTEENSNHGDQRRFRSVVS 201 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 ++ G S+R AEQ AA L++ Sbjct: 202 VNAKEKGCGWGPSRRLAEQEAARAALEQ 229 >gi|194863666|ref|XP_001970553.1| GG23313 [Drosophila erecta] gi|190662420|gb|EDV59612.1| GG23313 [Drosophila erecta] Length = 1329 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 14/225 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E IG F + LL +A T SI +H S +RLEFLGD +L L+ S L+ HF Sbjct: 975 TKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1034 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS+ +SLV+ T + V +L + + V ++ + D+ T +AD++E+ + Sbjct: 1035 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYA-VYANPKADL---KTKDRADLLEAFLG 1090 Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE---YK 176 ALY+D G+ F V + + + + D K++LQ+ G P+ YK Sbjct: 1091 ALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1150 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V SGP + + V V A S + AE AA + L+ Sbjct: 1151 VVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALE 1195 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S+I+H+ ERLEFLGD ++ L S LF F +EG L+ ++V + + + Sbjct: 824 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 878 Query: 88 ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144 A++L L F+ + D+C + A+ E+L+ AL LDGGI+VA F D ++ Sbjct: 879 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 936 Query: 145 Q 145 Q Sbjct: 937 Q 937 >gi|195624966|gb|ACG34313.1| endoribonuclease Dicer [Zea mays] Length = 329 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 19/152 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58 MSA + +E +GY F ++SL+E ALTH S + ++YERLE+LGD +L L+S Sbjct: 43 MSAKDVTAIEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSRE 102 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ-- 115 +F + + + G L+ + V E ++VA L F+R + L+ +C F+ ++ Sbjct: 103 VFRTYRTLQPGPLTRLRAANVDTEKLARVAVHRGLYRFLRHKAPKLQDQICFFIEEMRKY 162 Query: 116 --------------ADVVESLIAALYLDGGIE 133 D+VESLI A+YLD + Sbjct: 163 PVHSNGLLDPPKVLCDIVESLIGAIYLDSNFD 194 >gi|34541386|ref|NP_905865.1| ribonuclease III [Porphyromonas gingivalis W83] gi|34397703|gb|AAQ66764.1| ribonuclease III [Porphyromonas gingivalis W83] Length = 237 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 14/218 (6%) Query: 13 IGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ + + E A HSS S Y+ + ERLEFLGD +L IS L+ E Sbjct: 6 LGFKPSRIAFYELAFRHSSCSLVDDEGYRLNNERLEFLGDSVLATAISGYLYRQHPHWDE 65 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S R +++V + + VA++L L F+ V R ++ + I + +E+LI A+YL Sbjct: 66 GDMSQRRSAIVKRQINNVVAKKLRLDRFLIV----RGEISQMSSDIMGNTLEALIGAIYL 121 Query: 129 DGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D G + A FV + + + K+ L EWA K + E+++ Sbjct: 122 DKGYQAAEKFVLTRFIPVFHELEDSLTDTTTNYKSLLLEWAQ-KHHLNLEFRLISEPKRA 180 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H F V + G G+ +K+ A Q AA + L++ Sbjct: 181 HG-HFNYAVFVDGHRIGSGIGMNKKEAHQNAAHDALEK 217 >gi|194476942|ref|YP_002049121.1| putative ribonuclease III [Paulinella chromatophora] gi|171191949|gb|ACB42911.1| putative ribonuclease III [Paulinella chromatophora] Length = 246 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 109/225 (48%), Gaps = 10/225 (4%) Query: 4 LRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 LR LEK G NR L +++ALTH+S ++E+LEFLGD +L L + L + Sbjct: 17 LRGLGLEKLDGINLRNRDLAMVDEALTHTSAELGI--NHEKLEFLGDAVLRLAAAEHLLS 74 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H+ + G+ S LVS +++ + + IR+ + D + T ++A+ E+ Sbjct: 75 HYPTLSVGQSSALRAQLVSDRWLAEIGESCGIETVIRIGAAASGDQAARQT-LRAESTEA 133 Query: 122 LIAALY--LDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 LI ALY + +E ++ +W++ AL + + + K+ LQEW+ A+ P Y+ Sbjct: 134 LIGALYSSWENSLEPVNHWLSLHWQRSSIALLTDPYCYNWKSALQEWSQAEGLGLPNYRS 193 Query: 178 TFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + D RF V I +G ++R AEQ AA L Sbjct: 194 KEINRLHGDLSRFHSCVFIETKYLGEGFGGARREAEQQAARSALN 238 >gi|288928881|ref|ZP_06422727.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella sp. oral taxon 317 str. F0108] gi|288329865|gb|EFC68450.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella sp. oral taxon 317 str. F0108] Length = 459 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 15/226 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 YS+L + +G+ N S + AL H S+ ++ + ERLEFLGD IL ++ +++ Sbjct: 20 YSSLFEILGFYPRNISYYKLALMHKSVMRRGANGKPVNNERLEFLGDAILDAIVGDIVYR 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV ET +++A+E+ ++ I +SS S+M + E+ Sbjct: 80 HFPGKREGFLTNTRSKLVQRETLNRLAQEMGISRLI-LSSGHTSSHNSYMG---GNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G F++K + + K + K++L EW+ K V ++ + Sbjct: 136 LVGAIYLDRGYSSCMRFMEKRILAKMINIDKVAYKEVNFKSKLIEWSQ-KNRVKLDF-IV 193 Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G D + P F V + G+ G SK+ ++Q+A+ L+R Sbjct: 194 KEQGKDKNGSPFFLFCVHLEGVEGCNGRGYSKKESQQLASKLTLER 239 >gi|317504409|ref|ZP_07962390.1| ribonuclease III [Prevotella salivae DSM 15606] gi|315664455|gb|EFV04141.1| ribonuclease III [Prevotella salivae DSM 15606] Length = 364 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 111/225 (49%), Gaps = 13/225 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 YS+L +G+ + S + AL H SI + + ERLEFLGD IL ++ +++ Sbjct: 20 YSSLYTILGFYPRDISYYKLALMHKSIMKRNAKGKPVNNERLEFLGDAILDAIVGHIVYQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV ET +++A EL + I +S+ S+M + E+ Sbjct: 80 HFPGKREGFLTNTRSKLVQRETLNKLANELGINQLI-LSNGRSSSHNSYMG---GNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G + F+ + + K + K++L EW+ K V + + Sbjct: 136 LVGAVYLDRGYDACMNFMKNRILAQMINIDKVAYKEVNFKSKLIEWSQ-KNRVRLTFDIL 194 Query: 179 FRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +S ++ P F V I G+ G+ SK+ ++Q+A+ L+R Sbjct: 195 EQSKDNNGSPVFNYKVVIEGIDGCNGVGYSKKESQQLASKLTLER 239 >gi|229818312|ref|ZP_04448593.1| hypothetical protein BIFANG_03612 [Bifidobacterium angulatum DSM 20098] gi|229784182|gb|EEP20296.1| hypothetical protein BIFANG_03612 [Bifidobacterium angulatum DSM 20098] Length = 246 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 97/204 (47%), Gaps = 20/204 (9%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S +H + + YERLEFLGD +L L+ + LF EGEL+ V Sbjct: 38 LLVQALTHRSFAHEHPGAKHYERLEFLGDAVLELISTETLFRLHPDMSEGELAKMRAKAV 97 Query: 80 SAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134 S E S +AR +L + +I + + +SI D+VESLI A +L+ GI+ V Sbjct: 98 SEEALSAIARTKLHVEPYILLGHGEATQGGAQKSSILCDIVESLIGATFLEHGIDGARKV 157 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV- 193 +D + A + D KT L AH P Y + SGP++ FT V Sbjct: 158 VHRLIDDTLAEVATEGPAL--DWKTSLTVKAHHLGKGEPVYHMAV-SGPEYAQVFTARVS 214 Query: 194 -----EISGLAPAQGMDCSKRAAE 212 EI G+ G SKR A+ Sbjct: 215 LGDDEEILGV----GKGSSKRKAQ 234 >gi|330889504|gb|EGH22165.1| ribonuclease III [Pseudomonas syringae pv. mori str. 301020] Length = 171 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 84/166 (50%), Gaps = 3/166 (1%) Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+L Sbjct: 1 FPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 60 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLD G+E A V + +L +D KT LQE+ ++ P Y+V Sbjct: 61 IGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDI 120 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 G H F V EI+ L ++G S+R AEQVAAA L G+ Sbjct: 121 QGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQVAAAAALIALGV 166 >gi|256077012|ref|XP_002574802.1| ribonuclease III [Schistosoma mansoni] gi|238660017|emb|CAZ31035.1| ribonuclease III, putative [Schistosoma mansoni] Length = 907 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 29/167 (17%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 R+ L++++GY F LL +A+TH SSI+ Y +Y+RLEFLGD ILG +IS LF Sbjct: 683 RFFQLQEKLGYYFKGIELLAEAMTHQSSINKQYWGNYQRLEFLGDSILGHIISNYLFQKC 742 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFI-------------------------- 97 ++ G L+ +++VS + V E D+ FI Sbjct: 743 PNSSPGALTTARSTVVSNINLANVVVEHDIYPFIDFGNCSLKACIDDIKSIHRQTDSHFE 802 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLD--GGIEVAGTFVDKY 142 R+ +K + ADV ES++ A+++D G +VA + + ++ Sbjct: 803 RIELITKKVSSGLNVKVLADVFESILGAIFVDSNGNHQVASSIIHRF 849 >gi|195474532|ref|XP_002089545.1| GE19158 [Drosophila yakuba] gi|194175646|gb|EDW89257.1| GE19158 [Drosophila yakuba] Length = 1328 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 14/225 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E IG F + LL +A T SI +H S +RLEFLGD +L L+ S L+ HF Sbjct: 976 TKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1035 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS+ +SLV+ T + V +L + + V ++ + D+ T +AD++E+ + Sbjct: 1036 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYA-VYANPKADL---KTKDRADLLEAFLG 1091 Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE---YK 176 ALY+D G+ F V + + + + D K++LQ+ G P+ YK Sbjct: 1092 ALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1151 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V SGP + + V V A S + AE AA + L+ Sbjct: 1152 VVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALE 1196 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S+I+H+ ERLEFLGD ++ L S LF F +EG L+ ++V + + + Sbjct: 825 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 879 Query: 88 ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144 A++L L F+ + D+C + A+ E+L+ AL LDGGI+VA F D ++ Sbjct: 880 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 937 Query: 145 Q 145 Q Sbjct: 938 Q 938 >gi|225460893|ref|XP_002278706.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 364 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 21/145 (14%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ I Y F N+ LLE+ALTHSS + S SY+RLEF+GD LG +S +F + S Sbjct: 35 VERIINYKFRNKKLLEEALTHSSYTDS--ASYQRLEFIGDAALGCALSNYVFLAYPSLDP 92 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQ------------ 115 G+LS+ + +S E ++VA + L ++R ++ D V F ++Q Sbjct: 93 GQLSLIRAANISTEKLARVAVRVGLYQYVRHNAAALDDKVREFALAVQEEGDSVLYGGSV 152 Query: 116 ------ADVVESLIAALYLDGGIEV 134 AD+VES+ AA+Y+D ++ Sbjct: 153 KAPKFLADIVESVAAAIYVDCNFDL 177 >gi|297737474|emb|CBI26675.3| unnamed protein product [Vitis vinifera] Length = 337 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 21/145 (14%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ I Y F N+ LLE+ALTHSS + S SY+RLEF+GD LG +S +F + S Sbjct: 8 VERIINYKFRNKKLLEEALTHSSYTDS--ASYQRLEFIGDAALGCALSNYVFLAYPSLDP 65 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQ------------ 115 G+LS+ + +S E ++VA + L ++R ++ D V F ++Q Sbjct: 66 GQLSLIRAANISTEKLARVAVRVGLYQYVRHNAAALDDKVREFALAVQEEGDSVLYGGSV 125 Query: 116 ------ADVVESLIAALYLDGGIEV 134 AD+VES+ AA+Y+D ++ Sbjct: 126 KAPKFLADIVESVAAAIYVDCNFDL 150 >gi|45359089|ref|NP_988646.1| ribonuclease III family protein [Methanococcus maripaludis S2] gi|45047964|emb|CAF31082.1| Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain [Methanococcus maripaludis S2] Length = 230 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 7/221 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + L ++ F + ++ ++A HSS + + E ERLE+LGD +L L+IS LF Sbjct: 4 NFEKLLSKLDIQFNDLNIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLDLIISEYLF 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ EGE+S V A++L +++ + +I +DV E Sbjct: 64 KK-ENLSEGEMSKLRAKYVCESALFTYAKKLKFNNYVLLGKGEINSKGYNKPAIVSDVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179 + IAA+YLD G++ FV ++ +S K D KT+LQE+ + Y Sbjct: 123 AFIAAIYLDQGLDSVKKFVYEFIIPIIEESSKELFIDYKTKLQEFPEL-INKSINYVNLE 181 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +G HD +F + V+ +G+ SK+ AE AA L Sbjct: 182 ETGEAHDKKFVIAVKSGRKILGKGIGKSKKEAEMKAAKNAL 222 >gi|258648277|ref|ZP_05735746.1| ribonuclease III [Prevotella tannerae ATCC 51259] gi|260852193|gb|EEX72062.1| ribonuclease III [Prevotella tannerae ATCC 51259] Length = 284 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 20/211 (9%) Query: 26 ALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 A HSS + + + ERLEFLGD +L +++S ++F F+ +EG L+ + +V Sbjct: 40 AFAHSSSEYKGRNGRTVNNERLEFLGDAVLEMVVSDIVFRRFERKREGFLTGTRSKIVQR 99 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 T +Q+A E ++ +R S S ++I + E+ ALYLD G A F K Sbjct: 100 ATLNQLAEETGISKLLRTSM----RATSHNSNIGGNAFEAFFGALYLDRGYRAAYRFFAK 155 Query: 142 -----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV-TFRSGPDHDPRFTVVVEI 195 + A+ K + K++L EW+ K + E+K+ + + P F V + Sbjct: 156 RILGVHINLEAV--AKKEENFKSKLLEWSQ-KNRLRAEFKLDRTENNASNGPVFYTTVRL 212 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 GL +G SK+ ++Q AA LKRE Sbjct: 213 EGLEAGKGSGYSKKESQQKAAKAALMKLKRE 243 >gi|86608239|ref|YP_477001.1| ribonuclease III [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556781|gb|ABD01738.1| ribonuclease III [Synechococcus sp. JA-2-3B'a(2-13)] Length = 240 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 10/193 (5%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL++AL H S+ + + +RLE LGD +L +L++ LF + GEL+ + L S Sbjct: 34 LLDQALIHPSLDG--RRNNDRLELLGDSVLRILVTEFLFQSYPHLSVGELTAIRSDLTSD 91 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG---TF 138 +++A L ++ V S + D+ + AD E+L+ A YL GI + Sbjct: 92 AYLAELADLHGLDRYLEVGSSSQNDLAGRGRRL-ADAFEALLGAFYLSWGIYTLPRLHPW 150 Query: 139 VDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 +D Y +R + RR+ K LQE +G PEY++ + +H P FT+ V Sbjct: 151 LDPYLHRRVEQWFQDPTRRNPKAALQELTQRLWGSLPEYRLV--AAQEHPPHFTMEVWGQ 208 Query: 197 GLAPAQGMDCSKR 209 G +G SK+ Sbjct: 209 GRCWGRGEGRSKK 221 >gi|72383017|ref|YP_292372.1| RNAse III [Prochlorococcus marinus str. NATL2A] gi|72002867|gb|AAZ58669.1| RNAse III [Prochlorococcus marinus str. NATL2A] Length = 247 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 107/203 (52%), Gaps = 7/203 (3%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 + ++LTHSS + +YE LEFLGD +L L+ S + N + + GE S + LVS Sbjct: 39 INESLTHSSANSEI--NYENLEFLGDAVLRLIASDFIKNKYPYMQVGERSELRSHLVSDL 96 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI-EVAGTFVDK 141 +V +++++ S + + + +D + T IQA+ E+LI ALY I E ++ Sbjct: 97 WLEEVGKKIEINSVLVIGNKALRDKSANAT-IQAEATEALIGALYESLTIVEPIKDWLIP 155 Query: 142 YWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYK-VTFRSGPDHDPRFTVVVEISGL 198 +W++++ + + +++ K+ LQE +K P YK + D+ RF V + Sbjct: 156 FWEEKSKEVLADPHKKNYKSALQELTQSKGLSIPIYKTIEIDKKHDNPKRFFCNVYVKNR 215 Query: 199 APAQGMDCSKRAAEQVAAAEVLK 221 + A+G S + AE+ AA++ LK Sbjct: 216 SIAEGSGKSIKQAEKNAASKALK 238 >gi|307564748|ref|ZP_07627276.1| ribonuclease III [Prevotella amnii CRIS 21A-A] gi|307346470|gb|EFN91779.1| ribonuclease III [Prevotella amnii CRIS 21A-A] Length = 266 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 108/225 (48%), Gaps = 13/225 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + G+ N S + AL H S+S ++ + ERLEFLGD +L +++ +++N Sbjct: 20 YLSLYQITGFIPHNISYYKTALLHKSVSQRNKKGKLINNERLEFLGDAVLDCVVADIVYN 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F + +EG L+ + +V ET ++V+ E+ + ++ + C +I + E+ Sbjct: 80 RFPNKREGFLTNTRSKIVKRETLNKVSTEMGINKMLKQNGHTITHNC----NIAGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHA-KFGVTPEYKV 177 L+ ALY+D G F+ + L K + K++L EW K VT + +V Sbjct: 136 LVGALYIDHGYNACMIFMRDHVCGCLLSIEKMAYQEMNYKSKLIEWTQKNKVSVTFD-EV 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + +P F V I + +G +K+ ++Q AA KR Sbjct: 195 KTSIDENGNPIFLAQVVIGNVRCEEGKGFTKKESQQNAAKLTYKR 239 >gi|227538735|ref|ZP_03968784.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33300] gi|227241244|gb|EEI91259.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33300] Length = 229 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 23/222 (10%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L+ +G+ N L + A H S++ + +E S ERLEFLGD ILG +++ LLF + Sbjct: 4 LKNLLGFVPENVRLYQMAFRHKSVATAIKEGAKNSNERLEFLGDAILGSVVAELLFKKYP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQADVVES 121 EG L+ + +VS +Q++R+L L I+ + + SF S+ D E+ Sbjct: 64 YKDEGFLTEMRSKIVSRANLNQLSRKLGLNELIQYDARM----ISFPNKQGSLLGDAFEA 119 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-------KFRRDAKTELQEWAHAKFGVTPE 174 L+ A+YLD G F + R +K+ + K+ L EW G + Sbjct: 120 LVGAVYLDKGY----AFTKSFLLNRIIKTHVDIQLLEVTETNFKSRLIEWCQ-HLGKDVQ 174 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + T + F++ + G G D +K++AE++AA Sbjct: 175 FLPTANPEGESSKMFSIEAIVEGEVCGIGRDFNKKSAEKLAA 216 >gi|159905527|ref|YP_001549189.1| ribonuclease III [Methanococcus maripaludis C6] gi|159887020|gb|ABX01957.1| Ribonuclease III [Methanococcus maripaludis C6] Length = 229 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 7/221 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + L ++ F + ++ ++A HSS + + E ERLE+LGD +L L+IS LF Sbjct: 3 NFEKLLSKLDIKFNDLNIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLELIISEYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ EGE+S V A++L +++ + +I +DV E Sbjct: 63 KQ-ENLSEGEMSKLRAKYVCESALFTYAKKLKFDNYVLLGKGELISKGYNKPAIVSDVFE 121 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179 + IAA+YLD G+ A FV + +S K D KT+LQE+ + Y Sbjct: 122 AFIAAIYLDQGLNSAKKFVYNHILPIIEESSKELFIDYKTKLQEFPEL-INKSINYVNLE 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +G HD +F V V+ +G+ SK+ AE AA L Sbjct: 181 EAGEPHDKKFVVAVKQDRKILGKGIGKSKKEAEMKAAKNAL 221 >gi|156553364|ref|XP_001601748.1| PREDICTED: similar to ribonuclease iii [Nasonia vitripennis] Length = 1381 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F++ LL +A T SI ++ S +RLEFLGD +L L++S L+ Sbjct: 1019 KLTKFEEGIGVEFSHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1078 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ +T + V +L + + + T +AD++E+ Sbjct: 1079 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGN----PKAELKTKDRADLLEAF 1134 Query: 123 IAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE--- 174 + ALY+D G+ F + + + + + D K++LQ+ G P+ Sbjct: 1135 LGALYVDKGLLHCQVFCNVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1194 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV GP + +TV V G A+ S + AE +A E L++ Sbjct: 1195 YKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEK 1242 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 9/115 (7%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 K T SSI+H+ ERLEFLGD ++ L S LF+ F +EG L+ ++V + Sbjct: 867 KKETESSIAHN-----ERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHL 921 Query: 85 SQVARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 + +A++L+L ++ + SDL D+ + A+ E+L+ AL+LDGGI +A T Sbjct: 922 AVLAKKLNLEQYMLYAHGSDLCHDL--ELRHAMANCFEALMGALFLDGGIRIADT 974 >gi|189241708|ref|XP_967454.2| PREDICTED: similar to ribonuclease iii [Tribolium castaneum] Length = 1180 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 16/227 (7%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +G F + LL +A T S+ ++ S +RLEFLGD +L L+ S L+ +F Sbjct: 869 TKFEESVGLQFNHIRLLARAFTDRSVGYTNLTLGSNQRLEFLGDTVLQLIASEYLYKYFP 928 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS+ +SLV+ T + V +L ++++ V ++ + ++ T +AD++E+ I Sbjct: 929 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMSNYA-VYNNPKAEL---KTKDRADLLEAFIG 984 Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEYK 176 ALY+D G+E F V + + + + D K++LQ+ + P YK Sbjct: 985 ALYVDQGLEFCEVFCQVTLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPVYK 1044 Query: 177 --VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V F + + +TV V G A M S + AE AA + L+ Sbjct: 1045 SVVCFTNSEVNTRVYTVAVYFRGRRLASAMGHSIQQAEMNAAKKALE 1091 Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 13/124 (10%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S+I+H+ ERLEFLGD ++ L S LF F +EG L+ ++V + + + Sbjct: 718 TESNITHN-----ERLEFLGDAVVEFLSSIHLFYTFPDLEEGGLATYRAAIVQNQHLAVL 772 Query: 88 ARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 A+ L L F+ + SDL D+ + A+ E+L+ AL+LDGGI V VD+ + + Sbjct: 773 AKTLKLDQFMLYAHGSDLCHDL--ELRHAMANCFEALMGALFLDGGINV----VDRVFSE 826 Query: 146 RALK 149 K Sbjct: 827 TLFK 830 >gi|325123052|gb|ADY82575.1| ribonuclease III, ds RNA [Acinetobacter calcoaceticus PHEA-2] Length = 176 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 3/172 (1%) Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 ++I+ L++ + + EG L+ +LV E ++A +L L+ + +S+ K Sbjct: 1 MIIANYLYHAYPNENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRE 60 Query: 113 SIQADVVESLIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKF 169 SI AD VE++I A+YLD G + + V K++ ++ +D K+ LQE+ A+ Sbjct: 61 SILADTVEAIIGAIYLDSGDLNLLKDIVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQARK 120 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P Y+V G F V + GL G S+R AEQ AAAE+LK Sbjct: 121 KPLPVYEVVDIQGDAPHQHFKVECVVDGLPKIYGEGSSRRFAEQAAAAEILK 172 >gi|256077671|ref|XP_002575125.1| ribonuclease III [Schistosoma mansoni] gi|238660353|emb|CAZ31358.1| ribonuclease III, putative [Schistosoma mansoni] Length = 1531 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 11/228 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 + TLE +G F + +L +A+T ++ +RLEFLGD +L + + LF H Sbjct: 1061 KLCTLEDTLGIKFKHLRVLARAMTIRKTGFNFYTLGDNQRLEFLGDSLLKYVSTDYLFRH 1120 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVE 120 F EG LS+ NSLV+ T + V EL L ++ R +D + + +AD++E Sbjct: 1121 FPRHHEGHLSLLKNSLVNKYTQASVCSELGLEHYVIHRNKNDNCNNSQNQNVKYRADLLE 1180 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQE--WAHAKFGVTPE-- 174 + I AL++D + F + R ++ + DAK++LQ+ PE Sbjct: 1181 AFIGALFVDKDLAWVERFCQICFWPRLVEFILKQEWNDAKSKLQQCCLTFRSLNEDPEIA 1240 Query: 175 -YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YKV SGP + + V V G A G S + A+ AA + L+ Sbjct: 1241 HYKVLEHSGPTNQRVYRVGVYFRGQRLATGEGRSVQQAQMEAAKKALE 1288 Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 4/96 (4%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD ++ ++ S LF F EG L ++V + +++A L + ++ + Sbjct: 920 ERLEFLGDAVVEVISSIHLFFMFPELSEGHLDAYRQAIVQNQHLAELAVRLGIHKYLLYT 979 Query: 101 SDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEV 134 + D C T I A D E+L+AA+ LD G+++ Sbjct: 980 HSV--DFCYDSTFIYARSDAFEALMAAITLDAGLDI 1013 >gi|256077669|ref|XP_002575124.1| ribonuclease III [Schistosoma mansoni] gi|238660352|emb|CAZ31357.1| ribonuclease III, putative [Schistosoma mansoni] Length = 1577 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 11/228 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 + TLE +G F + +L +A+T ++ +RLEFLGD +L + + LF H Sbjct: 1107 KLCTLEDTLGIKFKHLRVLARAMTIRKTGFNFYTLGDNQRLEFLGDSLLKYVSTDYLFRH 1166 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVE 120 F EG LS+ NSLV+ T + V EL L ++ R +D + + +AD++E Sbjct: 1167 FPRHHEGHLSLLKNSLVNKYTQASVCSELGLEHYVIHRNKNDNCNNSQNQNVKYRADLLE 1226 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQE--WAHAKFGVTPE-- 174 + I AL++D + F + R ++ + DAK++LQ+ PE Sbjct: 1227 AFIGALFVDKDLAWVERFCQICFWPRLVEFILKQEWNDAKSKLQQCCLTFRSLNEDPEIA 1286 Query: 175 -YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YKV SGP + + V V G A G S + A+ AA + L+ Sbjct: 1287 HYKVLEHSGPTNQRVYRVGVYFRGQRLATGEGRSVQQAQMEAAKKALE 1334 Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 4/96 (4%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD ++ ++ S LF F EG L ++V + +++A L + ++ + Sbjct: 966 ERLEFLGDAVVEVISSIHLFFMFPELSEGHLDAYRQAIVQNQHLAELAVRLGIHKYLLYT 1025 Query: 101 SDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEV 134 + D C T I A D E+L+AA+ LD G+++ Sbjct: 1026 HSV--DFCYDSTFIYARSDAFEALMAAITLDAGLDI 1059 >gi|255660287|ref|ZP_05405696.1| ribonuclease III [Mycoplasma genitalium G37] Length = 271 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 8/147 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61 + +T K + N EKA H+S + ++ ESY+RLEFLGD ++ +++ LF Sbjct: 26 KLATFLKNLDIFPNNWEFFEKAFIHASYINEHEDVSESYDRLEFLGDALIDFVVAKKLFE 85 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ +V E +++ EL L F+++S+ + DV+E+ Sbjct: 86 LYPKYNEGLLTRTKIEIVKGENLNRIGMELKLGDFVKLSNG-----AELTENTVGDVLEA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL 148 L+ A+Y D G++ A FV+KY +R Sbjct: 141 LVGAIYEDMGMKKATEFVEKYIFERTF 167 >gi|282897359|ref|ZP_06305361.1| Ribonuclease III [Raphidiopsis brookii D9] gi|281198011|gb|EFA72905.1| Ribonuclease III [Raphidiopsis brookii D9] Length = 240 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 104/200 (52%), Gaps = 7/200 (3%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LL+ ALTH ++S S +YE+LEF+GD ++ L+ + +L+ + G+ + + LVS Sbjct: 30 PLLDLALTHPTVSES--ANYEQLEFVGDAVVRLVAAVVLWESYPDCCVGDFAAIRSVLVS 87 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFV 139 +++ARE DL ++ V+ D + + AD E+L+ ALYL + + ++ Sbjct: 88 DRILARLAREYDLELYLLVAGSATADNVGQESRL-ADAFEALLGALYLSTQNLILIRPWL 146 Query: 140 DKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT-FRSGPDHDPRFTVVVEIS 196 D ++++ A ++ R + K LQEW A + V PEY+V + RF V + Sbjct: 147 DPHFQELAEQIRLDPARLNYKAALQEWTQAGYKVLPEYRVVEVNQSQNAHERFLAQVWLH 206 Query: 197 GLAPAQGMDCSKRAAEQVAA 216 QG S +AAEQ AA Sbjct: 207 EKILGQGKGRSIKAAEQEAA 226 >gi|12045228|ref|NP_073039.1| ribonuclease III [Mycoplasma genitalium G37] gi|1350804|sp|P47607|RNC_MYCGE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|3844954|gb|AAC71594.1| ribonuclease III [Mycoplasma genitalium G37] gi|166078923|gb|ABY79541.1| ribonuclease III [synthetic Mycoplasma genitalium JCVI-1.0] Length = 262 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 8/147 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61 + +T K + N EKA H+S + ++ ESY+RLEFLGD ++ +++ LF Sbjct: 17 KLATFLKNLDIFPNNWEFFEKAFIHASYINEHEDVSESYDRLEFLGDALIDFVVAKKLFE 76 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ +V E +++ EL L F+++S+ + DV+E+ Sbjct: 77 LYPKYNEGLLTRTKIEIVKGENLNRIGMELKLGDFVKLSNG-----AELTENTVGDVLEA 131 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL 148 L+ A+Y D G++ A FV+KY +R Sbjct: 132 LVGAIYEDMGMKKATEFVEKYIFERTF 158 >gi|184200693|ref|YP_001854900.1| ribonuclease III [Kocuria rhizophila DC2201] gi|183580923|dbj|BAG29394.1| ribonuclease III [Kocuria rhizophila DC2201] Length = 234 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 98/209 (46%), Gaps = 14/209 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L +R+G +L ALTH S + H + ERLEFLGD +L L ++ +++ + Sbjct: 10 LLERLGVDLDTETL-RIALTHRSYAYEHPGEVHNERLEFLGDAVLQLAVTDEIYHRYPEW 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ S+VSA + VAR L L IR+ + S SI AD E++I A+ Sbjct: 69 DEGRLAKLRASVVSARALAGVARSLGLGPHIRLGKGEVRTHGSDKASILADTTEAVIGAV 128 Query: 127 YLDGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGV-TPEYKVTFR 180 Y G A V + R L G RD KT + E A+ G+ T Y+V Sbjct: 129 YESLGPVPARDLVLRMMVPLLEDTRVLHEG---RDWKTHIVELV-AQHGLGTVRYEVEG- 183 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 +GPDH+ FT + G G SK+ Sbjct: 184 TGPDHERHFTADAVVDGNVLGHGEGTSKK 212 >gi|159027736|emb|CAO89606.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 234 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 94/175 (53%), Gaps = 7/175 (4%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL+ ALTH S+S ++YE+LEF+GD ++ L+ + +L + A GE + + +VS Sbjct: 31 LLDLALTHPSVSRD--KNYEQLEFVGDSVVRLVAAEVLLETYPEALVGEFAALRSMMVSD 88 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV-AGTFVD 140 T ++ A ++ VSS D ++ + AD E+++ ALYL + +++D Sbjct: 89 RTLAEFADRYGFERYLLVSSSTSIDRAGRISRL-ADAFEAVLGALYLSTQTMILVRSWLD 147 Query: 141 KYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + +++A ++ R++ K LQEW AK+ P+Y V +G D + RF V Sbjct: 148 EPLREKAAEIRRDPARQNYKDALQEWTQAKYKKLPQYLVKEINGLDQE-RFCAEV 201 >gi|75909289|ref|YP_323585.1| ribonuclease III [Anabaena variabilis ATCC 29413] gi|75703014|gb|ABA22690.1| RNAse III [Anabaena variabilis ATCC 29413] Length = 228 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 8/185 (4%) Query: 17 FANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F + LL +ALTH S + E ERLEFLGD IL L L+ E EL+ Sbjct: 7 FRDEKLLRRALTHRSYVNENPEEGEHNERLEFLGDAILNFLSGEYLYRSHPDRGEDELTR 66 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG--G 131 R ++LV + ++ A E+ L +R+ +D ++ + E++I A YLD Sbjct: 67 RRSALVDEKQLAKFAIEVGLDFRMRLGKGAIRDGGYQNPNLLSSTFEAVIGAYYLDNNSN 126 Query: 132 IEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR-SGPDHDPR 188 IE ++ ++ + R D+K QEW G TP +T + SGP H P Sbjct: 127 IEAVRVIIEPLFESVPEQIVVVRSNVDSKNRFQEWVQRNIGPTPPKYLTKQISGPSHAPE 186 Query: 189 FTVVV 193 F V Sbjct: 187 FQAKV 191 >gi|198275414|ref|ZP_03207945.1| hypothetical protein BACPLE_01577 [Bacteroides plebeius DSM 17135] gi|198271750|gb|EDY96020.1| hypothetical protein BACPLE_01577 [Bacteroides plebeius DSM 17135] Length = 339 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 112/225 (49%), Gaps = 14/225 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62 Y K +G+ N + ++AL H S S + + ERLEFLGD IL +++ +++ Sbjct: 20 YLCFYKILGFYPRNIEIYQQALLHKSSSVKAKGRLLNNERLEFLGDAILDAVVADIVYKR 79 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F+ +EG L+ + +V ET +Q+A ++ L I+ ++ + S+M + E+L Sbjct: 80 FEGKREGFLTNTRSKIVQRETLNQIAVKIGLDKLIKYTT-RQSSHNSYMC---GNAFEAL 135 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVT 178 + A+YLD G F+++ + L K R + K++L EW KF + E+ + Sbjct: 136 VGAIYLDRGYATCKFFMEERIIKPYLNLEKLSRKEVNFKSKLIEWGQKNKFLI--EFNLL 193 Query: 179 FRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 ++ +P F V + + QG SK+ ++Q AA E L + Sbjct: 194 EQTVDEQQNPVFETQVVVEQIPAGQGKGYSKKESQQEAAHETLNK 238 >gi|134045095|ref|YP_001096581.1| ribonuclease III [Methanococcus maripaludis C5] gi|132662720|gb|ABO34366.1| RNAse III [Methanococcus maripaludis C5] Length = 229 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 7/221 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + L ++ F + ++ ++A HSS + + E ERLE+LGD +L L+I LF Sbjct: 3 NFEKLLSKLDIKFNDLNIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLELIIIEYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ EGE+S V A++L+ ++I + +I +DV E Sbjct: 63 KK-ENLSEGEMSKLRAKYVCESALFTYAKKLNFNNYILLGKGELNSKGYNKPAIISDVFE 121 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179 + IAA+YLD G++ A FV +S K D KT LQE T +Y Sbjct: 122 AFIAAIYLDQGLDSAKKFVYNNIIPIIEESSKELFIDHKTRLQELPELN-NKTIKYVKLE 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +G HD +F + V+ +G+ SK+ AE AA L Sbjct: 181 EAGKPHDKKFVIAVKSGQKMLGKGIGKSKKEAEMKAAKNAL 221 >gi|84498322|ref|ZP_00997119.1| ribonuclease III [Janibacter sp. HTCC2649] gi|84381822|gb|EAP97705.1| ribonuclease III [Janibacter sp. HTCC2649] Length = 249 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 86/193 (44%), Gaps = 5/193 (2%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 +LL +ALTH S ++ ERLEFLGD +LGL+++ L+ EG+L+ ++ Sbjct: 27 ALLGRALTHRSYAYEAGGIPHNERLEFLGDSVLGLVVTDSLYVTHPDLTEGQLAKLRAAV 86 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 V+ + V R L L ++ + SI AD VE++I A Y G+ AG Sbjct: 87 VNMRALAAVGRTLGLGDYLHLGRGEESTGGRDKDSILADTVEAVIGATYCSAGLVAAGDL 146 Query: 139 VDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 V S D KT LQE A P V GP+H F+ V + Sbjct: 147 VHHLLDPLMASSATLGAGLDWKTSLQEIC-ALHSAGPVEYVLEEDGPEHSKTFSARVLVG 205 Query: 197 GLAPAQGMDCSKR 209 G+ G+ +K+ Sbjct: 206 GVEHGSGVGRTKK 218 >gi|302344776|ref|YP_003813129.1| ribonuclease III [Prevotella melaninogenica ATCC 25845] gi|302149813|gb|ADK96075.1| ribonuclease III [Prevotella melaninogenica ATCC 25845] Length = 365 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 25/231 (10%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + IG + S + AL H S++ + + ERLEFLGD IL ++ +++ Sbjct: 31 YLSLYQIIGIIPHDISYYKTALLHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 90 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + +V +T +++A+E+ + I + S + + + E+ Sbjct: 91 HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGIGQLILSNG----QTSSHNSYLGGNAFEA 146 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---------RRDAKTELQEWAHAKFGVT 172 L+ ALYLD G K+ KQ+ L GK + K++L EW+ K V Sbjct: 147 LVGALYLDHGYNACM----KFMKQQVL--GKLINIDKVAYKEVNFKSKLIEWSQ-KNKVN 199 Query: 173 PEYK-VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E+K + + P F V + G+ +G SK+ ++Q A+ L+R Sbjct: 200 MEFKLIENQKDKQGSPTFHFQVIMEGIPCGEGHGYSKKESQQEASKLTLQR 250 >gi|126178317|ref|YP_001046282.1| ribonuclease III [Methanoculleus marisnigri JR1] gi|125861111|gb|ABN56300.1| RNAse III [Methanoculleus marisnigri JR1] Length = 258 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 28/215 (13%) Query: 21 SLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 L ++ALTH S ++ + E ERLEFLG+ +L +I+ L+ +D GE++ R Sbjct: 55 PLYDRALTHRSYANHGEYPAETFEDNERLEFLGNYVLDFVIADHLYGEYD-LPPGEMNRR 113 Query: 75 FNSLVSAETCSQVARELDLASFIR-----VSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 QV R LA +R + +R+ SI AD E+LI A+YLD Sbjct: 114 L----------QVTRNTKLAEIVRRQGLGIDGAVRRRGQPPTDSIVADAFEALIGAIYLD 163 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTF-RSGPDHDP 187 G+ VA V +++ + R+ + LQE+ A G E + F ++GP + P Sbjct: 164 RGLGVARDVVLAIFEEE-IAECDTHRNYRGRLQEYVARENLG---ELEYAFLQTGPGNCP 219 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + V + G+ +G +K+ A +AA E L R Sbjct: 220 VWAARVTVGGIPFGEGEARTKQGAAMIAAKEALAR 254 >gi|304382096|ref|ZP_07364607.1| ribonuclease 3 [Prevotella marshii DSM 16973] gi|304336694|gb|EFM02919.1| ribonuclease 3 [Prevotella marshii DSM 16973] Length = 359 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 111/222 (50%), Gaps = 13/222 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L + IG+ S ++AL H S++ + + ERLEFLGD IL ++ +++ HF Sbjct: 23 LRRIIGFYPHEISYYQQALMHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYQHFP 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + LV ET +++A+E+ + + I +SS S+M + E+L+ Sbjct: 83 GKREGFLTNTRSKLVQRETLNRLAKEMGINNLI-LSSGRTSSHNSYMG---GNAFEALVG 138 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYK-VTFR 180 A+YLD G F++ + + K + K++L EW+ K + +++ V + Sbjct: 139 AIYLDKGYNACMKFMNHRILGQIINLDKMAYKEVNFKSKLIEWSQ-KNRIRLDFELVEQK 197 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +P FT V + + G SK+ ++Q A+ + LK+ Sbjct: 198 KDESGNPVFTCKVVLEDVEGCCGTGFSKKESQQTASEKTLKK 239 >gi|312375831|gb|EFR23111.1| hypothetical protein AND_13526 [Anopheles darlingi] Length = 1254 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 18/228 (7%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + E IG F++ LL +A T S+ + S +RLEFLGD +L L+ S L+ HF Sbjct: 779 TRFEDSIGVKFSHIRLLARAFTDRSMGFTNLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 838 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS+ +SLV+ T + V +L + + V S+ + ++ T +AD++E+ + Sbjct: 839 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMTQYA-VYSNPKAEL---KTKDRADLLEAFLG 894 Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE---YK 176 ALY+D G+ F V + + + + D K++LQ+ G P+ YK Sbjct: 895 ALYVDKGLVYCEKFCQVCLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPLYK 954 Query: 177 VTFRSGPDHDPRFTVVVEISG--LAPAQGMDCSKRAAEQVAAAEVLKR 222 V +GP + ++V V G LA A G S + AE AA + L++ Sbjct: 955 VIECTGPTNTRVYSVAVYFRGKRLACANGH--SIQQAEMNAARQALEK 1000 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S+I+H+ ERLEFLGD ++ + S LF+ F +EG L+ ++V + + + Sbjct: 627 TDSNITHN-----ERLEFLGDAVVEFITSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVL 681 Query: 88 ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVA 135 A++L L F+ + D+C + A+ E+L+ AL LDGGI VA Sbjct: 682 AKKLHLEEFMLYAHG--SDLCHELELRHALANCFEALMGALLLDGGIAVA 729 >gi|288801829|ref|ZP_06407271.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella melaninogenica D18] gi|288335871|gb|EFC74304.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella melaninogenica D18] Length = 354 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 25/231 (10%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + IG + S + AL H S++ + + ERLEFLGD IL ++ +++ Sbjct: 20 YLSLYQIIGIIPHDISYYKTALLHKSVARRNAKGKPINNERLEFLGDAILDAIVGDIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + +V +T +++A+E+ + I + S + + + E+ Sbjct: 80 HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGIGQLILSNG----QTSSHNSYLGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---------RRDAKTELQEWAHAKFGVT 172 L+ ALYLD G K+ KQ+ L GK + K++L EW+ K V Sbjct: 136 LVGALYLDHGYNACM----KFMKQQVL--GKLINIDKVAYKEVNFKSKLIEWSQ-KNKVN 188 Query: 173 PEYK-VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E+K + + P F V + G+ +G SK+ ++Q A+ L+R Sbjct: 189 MEFKLIENQKDKQGSPTFHFQVIMEGIPCGEGHGYSKKESQQEASKLTLQR 239 >gi|319952824|ref|YP_004164091.1| rnase iii [Cellulophaga algicola DSM 14237] gi|319421484|gb|ADV48593.1| RNAse III [Cellulophaga algicola DSM 14237] Length = 245 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 16/213 (7%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ ++ +KA H S + ++ +YERLEFLGD +LG +IS L+ + E Sbjct: 26 LGFKPKKLAVYKKAFLHRSANIRDEDGTPMNYERLEFLGDSMLGTIISKYLYTEVPTGDE 85 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +VS E +++ +EL+L ++ + R F +I +V E+L+ A+YL Sbjct: 86 GYLTKMRSKIVSREHLNELGKELNLIHYV----ESRIPKSHFGDNIHGNVYEALVGAIYL 141 Query: 129 DGGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 D G + F+ K Y L+ GK K+ L EW K + Y + +G Sbjct: 142 DRGYKYCEKFIHKSVIVPYVDIEQLE-GKV-ISYKSLLIEWCQ-KQKKSFYYDIYEDTGN 198 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 D F V + I+ ++ SK+ AE++A+ Sbjct: 199 DAVKHFAVKLHINKKIVSKARATSKKKAEEIAS 231 >gi|224476345|ref|YP_002633951.1| ribonuclease III [Staphylococcus carnosus subsp. carnosus TM300] gi|254807899|sp|B9DPJ2|RNC_STACT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|222420952|emb|CAL27766.1| putative ribonuclease III [Staphylococcus carnosus subsp. carnosus TM300] Length = 242 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 15/206 (7%) Query: 21 SLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 L ++A +HSS + + ERLEFLGD +L L +S LF+ + EG L+ Sbjct: 32 PLYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLFDKYPELPEGNLTKMRA 91 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 ++V + A ++ L I + K S+ +D E+ + ALYLD G++ Sbjct: 92 TIVCEPSLVIFANKIQLNELILLGKGEEKTGGRTRPSLVSDAFEAFVGALYLDQGLDAVW 151 Query: 137 TFVDK----YWKQRALKSGKFRRDAKTELQEWAH--AKFGVTPEYKVTFRSGPDHDPRFT 190 F ++ + + L D KT+ QE H +K VT Y++ GP H FT Sbjct: 152 QFSEEVIFPHVEDDELMG---VVDFKTQFQELIHRLSKGNVT--YRLIDEQGPAHHRLFT 206 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAA 216 V + G A+G +K+ +EQ AA Sbjct: 207 SEVLLEGEPVAKGQGRTKKESEQKAA 232 >gi|170594121|ref|XP_001901812.1| RNase3 domain containing protein [Brugia malayi] gi|158590756|gb|EDP29371.1| RNase3 domain containing protein [Brugia malayi] Length = 1329 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 104/230 (45%), Gaps = 12/230 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 LEK IG F + +L KA T +I + +RLEFLGD +L L+ + L+ HF Sbjct: 1020 LEKNIGITFKHIRVLAKAFTRRNIGFNNLTLGHNQRLEFLGDTVLQLITTDYLYKHFPYH 1079 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-TSIQADVVESLIAA 125 EG LS+ LVS T S + ++ + ++ ++K + +AD+VE+ + A Sbjct: 1080 HEGHLSILRTCLVSNRTQSVICDDIGMTKYLVTPKVMQKSGMPVLRVKDKADLVEAFLGA 1139 Query: 126 LYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEYKV 177 LY+D G + F + + + + + D K++LQ+ + PEY+ Sbjct: 1140 LYVDRGFDYCKVFCRICFFPRLKFFIIAQHWNDPKSQLQQCCLTLRQMDGGEPDIPEYRT 1199 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL-KREGIW 226 GP + + V V A G + + A+ AA L KR ++ Sbjct: 1200 IAVEGPTNTRIYKVAVYFRKKRLAVGCGHTMQLAQMRAAENALIKRSDLF 1249 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 9/111 (8%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 K S ++H+ ERLEFLGD ++ + + LF F EG L+ +++V + Sbjct: 864 KKAEQSPLNHN-----ERLEFLGDAVIEFITTIHLFYMFSELDEGGLATYRSTMVQNKNL 918 Query: 85 SQVARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIE 133 + +A+++ L F+ + D+C S + A+ E+++AA+YLD GI+ Sbjct: 919 ALLAKKIGLDEFMLYAHG--PDLCHESDLRHAMANAFEAMMAAIYLDAGID 967 >gi|254233016|ref|ZP_04926343.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis C] gi|124602075|gb|EAY61085.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis C] Length = 198 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 80/158 (50%), Gaps = 6/158 (3%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRV 99 +EFLGD +LGL I+ LF+ EG+L+ S+V+ + + VAR L L + + Sbjct: 1 MEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLL 60 Query: 100 SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDA 157 + +SI AD +ESL+ A+YL G+E A + + + A + D Sbjct: 61 GRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDW 120 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 KT LQE A+ P Y VT +GPDHD FT VV + Sbjct: 121 KTSLQELTAARGLGAPSYLVT-STGPDHDKEFTAVVVV 157 >gi|33241211|ref|NP_876153.1| dsRNA-specific ribonuclease/ribonuclease III [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|5738536|emb|CAB52818.1| ribonuclease III [Prochlorococcus marinus] gi|33238741|gb|AAQ00806.1| dsRNA-specific ribonuclease/ribonuclease III [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 249 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 7/205 (3%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 +L +ALTH+S + S ++ERLEF GD +L L S + +HF G+ S LVS Sbjct: 45 ILNEALTHTSFNLSI--NHERLEFQGDAVLRLAASEYIQSHFPKLSVGDRSALRAQLVSD 102 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVD 140 ++V ++ + + + +++ KD + T I A+ E+LI ALY I+ +++ Sbjct: 103 RWLAKVGYKIGIKTTMLIANKALKDEAATDT-ICAEGTEALIGALYECLRNIDAIQNWLE 161 Query: 141 KYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISG 197 YW + + + +++ K+ LQEW+ + P Y + S D RF V I Sbjct: 162 PYWNIESEEVLADPHKQNEKSALQEWSQGQGLNKPIYTIKEISKQHGDLKRFYCTVHIQN 221 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKR 222 +G S++ A++ AA E LK+ Sbjct: 222 DFRGEGWGSSRKKAQKEAAKEALKK 246 >gi|195455348|ref|XP_002074681.1| GK23200 [Drosophila willistoni] gi|194170766|gb|EDW85667.1| GK23200 [Drosophila willistoni] Length = 1320 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 108/225 (48%), Gaps = 14/225 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +G F + LL +A T SI +H S +RLEFLGD +L L+ S L+ HF Sbjct: 962 TKFEDSVGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1021 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS+ +SLV+ T + V +L + + V ++ + D+ T +AD++E+ + Sbjct: 1022 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYA-VYANPKADL---KTKDRADLLEAFLG 1077 Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE---YK 176 +LY+D G+ F V + + + + D K++LQ+ G P+ YK Sbjct: 1078 SLYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1137 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V SGP + + V V A S + AE AA + L+ Sbjct: 1138 VVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALE 1182 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S+I+H+ ERLEFLGD ++ L S LF F +EG L+ ++V + + + Sbjct: 811 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 865 Query: 88 ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144 A++L L F+ + D+C + A+ E+L+ AL LDGGI+VA F D ++ Sbjct: 866 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 923 Query: 145 Q 145 Q Sbjct: 924 Q 924 >gi|225447097|ref|XP_002270948.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 236 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 25/167 (14%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ +GY+F N+ LLE+A TH+S + Q SYERLEF+GD +L LLI+ F + + Sbjct: 33 VEQILGYSFTNKRLLEEAYTHASCQKN-QFSYERLEFMGDSVLSLLITKEQFFLYPDLQP 91 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ------------ 115 G L+ ++ V E ++VA + L F+R + + + F +I+ Sbjct: 92 GRLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQIYEFAEAIKEYPLHSNGQIEV 151 Query: 116 ----ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRD 156 ADVVES I A+++D VD WK G++ R+D Sbjct: 152 PKVLADVVESTIGAVFVD-----CNCSVDTVWKDYFAGRGEYPLRKD 193 >gi|315604391|ref|ZP_07879457.1| ribonuclease III [Actinomyces sp. oral taxon 180 str. F0310] gi|315314097|gb|EFU62148.1| ribonuclease III [Actinomyces sp. oral taxon 180 str. F0310] Length = 241 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 99/209 (47%), Gaps = 9/209 (4%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 +LL+ AL H S ++ + ERLEFLGD +L ++I+ L+ + E +LS + Sbjct: 29 TLLQLALVHRSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRAAT 88 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 VS + + AR + L F+ + SI +D E+LI A YL G+E A Sbjct: 89 VSQQPLAAAARRIGLGDFVFLGKGESTHGGRDKDSILSDTFEALIGATYLTSGLEEARRV 148 Query: 139 VDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVV 193 + + A G+ +D KT L E++ +K Y+V GPDH FT V Sbjct: 149 ILARLGFLLADAPSRGQH-QDWKTLLVEYSQSKGLGEVSYEVEG-EGPDHQRVFTARAYV 206 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 S A +G SK+ AE AA + +KR Sbjct: 207 SESSEALGEGRASSKKHAENAAAQDAMKR 235 >gi|260910581|ref|ZP_05917245.1| ribonuclease 3 [Prevotella sp. oral taxon 472 str. F0295] gi|260635280|gb|EEX53306.1| ribonuclease 3 [Prevotella sp. oral taxon 472 str. F0295] Length = 473 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 116/226 (51%), Gaps = 15/226 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 YS+L + +G+ N + AL H S+ ++ + ERLEFLGD IL ++ +++ Sbjct: 20 YSSLFEILGFYPRNIGYYKLALMHKSVMRRGANGKPVNNERLEFLGDAILDAIVGDIVYR 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV ET +++A+E+ ++ I +SS S+M + E+ Sbjct: 80 HFPGKREGFLTNTRSKLVQRETLNRLAQEMGISRLI-LSSGHSSSHNSYMG---GNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G F++K + + K + K++L EW+ K V ++ + Sbjct: 136 LVGAIYLDRGYASCMRFMEKRILTKMINIDKVAYKEVNFKSKLIEWSQ-KNRVKLDF-IV 193 Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G D + P F VE+ G+ +G SK+ ++Q+A+ L+R Sbjct: 194 KEQGKDKNGSPFFLFCVELEGIEGCKGRGYSKKESQQLASKLTLER 239 >gi|195151442|ref|XP_002016656.1| GL11697 [Drosophila persimilis] gi|194110503|gb|EDW32546.1| GL11697 [Drosophila persimilis] Length = 1262 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 108/225 (48%), Gaps = 14/225 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E IG F + LL +A T SI +H S +RLEFLGD +L L+ S L+ HF Sbjct: 941 TKFEDSIGLKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLISSEYLYRHFP 1000 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS+ +SLV+ T + V +L + + V ++ + D+ T +AD++E+ + Sbjct: 1001 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMTKYA-VYANPKADL---KTKDRADLLEAFLG 1056 Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE---YK 176 +LY+D G+ F V + + + + D K++LQ+ G P+ YK Sbjct: 1057 SLYVDKGLLFCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1116 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V SGP + + V V A S + AE AA + L+ Sbjct: 1117 VVEASGPTNTRVYKVAVYFRSKRLATSSGASIQQAEMNAAKQALE 1161 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S+I+H+ ERLEFLGD ++ L S LF F +EG L+ ++V + + + Sbjct: 790 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 844 Query: 88 ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVA 135 A++L L F+ + D+C + A+ E+L+ AL LDGGI+VA Sbjct: 845 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVA 892 >gi|157285009|gb|ABV31244.1| dicer-like 1 [Physcomitrella patens] Length = 1662 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 109/249 (43%), Gaps = 40/249 (16%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ + +LE IG+ F RSLL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1316 MLSIDFDSLEASIGHKFRKRSLLVEAITHASRPSSGVPGYQRLEFVGDAVLDYLITRFLF 1375 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115 + G L+ + V+ E ++VA + +R SS L + +F+ IQ Sbjct: 1376 FKYTDLPPGRLTDLRAAAVNNENFARVAVKHSFHLHLRHGSSALETQIRNFVNDIQTELD 1435 Query: 116 ------------------ADVVESLIAALYLDGGIEVAGTFVDKYWK------QRALKSG 151 D++ES+ AL+LD +E D WK Q + Sbjct: 1436 KPGVNSFGLGDFKAPKVLGDILESIAGALFLDACLE-----TDHVWKVFEPLLQPMVTPE 1490 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 ELQE + EYK + R+G TV V + G+ + K+ A Sbjct: 1491 TLPMHPVRELQERCQQQAEAL-EYKAS-RAG----NVATVEVYVDGVQIGSAQNAQKKMA 1544 Query: 212 EQVAAAEVL 220 +++AA L Sbjct: 1545 QKLAARNAL 1553 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ +I Y A +LE ALT +S ++ SYER E LGD L ++S LF + E Sbjct: 1096 LKHQIDYPIAASKVLE-ALTAASCQETF--SYERAELLGDAYLKWVVSRRLFLKYPCKHE 1152 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR 98 G+L+ +VS Q A + L S+I+ Sbjct: 1153 GQLTRMRQQIVSNSVLYQYALDKGLQSYIQ 1182 >gi|324501501|gb|ADY40667.1| Ribonuclease 3 DROSHA [Ascaris suum] Length = 1304 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 11/225 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + EK IG F + +L KA T ++ + +RLEFLGD +L L+ + L+ HF Sbjct: 1000 TEFEKSIGVTFKHIRVLAKAFTRRNVGFNNLTLGHNQRLEFLGDTVLQLITTDYLYKHFP 1059 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-TSIQADVVESLI 123 EG LS+ LVS +T S + ++ + ++ + ++K+ + +AD+VES + Sbjct: 1060 MHHEGHLSILRTCLVSNKTQSVICDDVGMTKYLVMPKAMQKNGAPVLRVKDKADLVESFL 1119 Query: 124 AALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEY 175 ALY+D G+ F V + + + + D K++LQ+ V PEY Sbjct: 1120 GALYVDRGLGYCKVFCRVCFFPRLKFFIVSQRWNDPKSQLQQCCLTLRQVDGGEPDIPEY 1179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + GP + + V V A G + + A+ AA L Sbjct: 1180 RTIAVEGPTNTRVYKVAVYFRKKRLAVGSGHTMQIAQMHAAENAL 1224 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 9/111 (8%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 K + S ++H+ ERLEFLGD ++ + + LF F EG L+ +++V + Sbjct: 846 KKVEQSPLNHN-----ERLEFLGDAVIEFITTIHLFFMFTELDEGGLATYRSTMVQNKNL 900 Query: 85 SQVARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIE 133 + +A+++ L F+ + D+C S + A+ E+++AA+YLD GI+ Sbjct: 901 AVLAKKIGLDEFMLYAHG--PDLCHESDLRHAMANAFEAMMAAIYLDAGID 949 >gi|256379958|ref|YP_003103618.1| ribonuclease III [Actinosynnema mirum DSM 43827] gi|255924261|gb|ACU39772.1| ribonuclease III [Actinosynnema mirum DSM 43827] Length = 267 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 65/186 (34%), Positives = 90/186 (48%), Gaps = 14/186 (7%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S ++ ERLEFLGD +LGL+++ L+ EG+L+ S+V Sbjct: 28 LLTLALTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLYRAHPDRPEGQLAKLRASVV 87 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVAG 136 + + VAR L R + + SI AD +E++I A+YL GI+ A Sbjct: 88 NMHALAGVARGLGADGLGGHLLLGRGEELTGGRDKASILADGLEAVIGAVYLQFGIDTAR 147 Query: 137 TFV----DKYWKQRALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPRFTV 191 V D + L+ D KT LQE A + GV PEY+V + GPDH FT Sbjct: 148 QLVHHLFDPLLAEAPLRGAGL--DWKTSLQELTASSGLGV-PEYRVDDQ-GPDHRKEFTA 203 Query: 192 VVEISG 197 V + G Sbjct: 204 TVYVGG 209 >gi|126642554|ref|YP_001085538.1| ribonuclease III [Acinetobacter baumannii ATCC 17978] Length = 176 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 3/172 (1%) Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 ++I+ L++ + EG L+ +LV E ++A +L L+ + +S+ K Sbjct: 1 MIIANYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRE 60 Query: 113 SIQADVVESLIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKF 169 SI AD VE++I A+YLD + + V K++ ++ +D K+ LQE+ A+ Sbjct: 61 SILADTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARK 120 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P Y+V G F V + GL+ G S+R AEQ AAAE+LK Sbjct: 121 KPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILK 172 >gi|312069951|ref|XP_003137921.1| RNase3 domain-containing protein [Loa loa] gi|307766916|gb|EFO26150.1| RNase3 domain-containing protein [Loa loa] Length = 1297 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 104/230 (45%), Gaps = 12/230 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 LEK IG F + +L KA T +I + +RLEFLGD +L L+ + L+ HF Sbjct: 990 LEKSIGVTFKHIRVLAKAFTRRNIGFNNLTLGHNQRLEFLGDTVLQLITTDYLYKHFPYH 1049 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-TSIQADVVESLIAA 125 EG LS+ LVS T S + ++ + ++ ++K + +AD+VE+ + A Sbjct: 1050 HEGHLSILRTCLVSNRTQSVICDDIGMTKYLVTPKVMQKSGLPILRVKDKADLVEAFLGA 1109 Query: 126 LYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEYKV 177 LY+D G + F + + + + + D K++LQ+ + PEY+ Sbjct: 1110 LYVDRGFDYCKVFCRICFFPRLKFFIIAQHWNDPKSQLQQCCLTLRQMDGGEPDIPEYRT 1169 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL-KREGIW 226 GP + + V V A G + + A+ AA L KR ++ Sbjct: 1170 IAVEGPTNTRIYKVAVYFRKKRLAVGCGHTMQLAQMRAAENALIKRSDLF 1219 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 9/111 (8%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 K S ++H+ ERLEFLGD ++ + + LF F EG L+ +++V + Sbjct: 834 KKAEQSPLNHN-----ERLEFLGDAVIEFITTIHLFYMFSELDEGGLATYRSTMVQNKNL 888 Query: 85 SQVARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIE 133 + +A+++ L F+ + D+C S + A+ E+++AA+YLD GI+ Sbjct: 889 AVLAKKIGLDEFMLYAHG--PDLCHESDLRHAMANAFEAMMAAIYLDAGID 937 >gi|168010516|ref|XP_001757950.1| dsRNA-specific nuclease dicer and related ribonuclease [Physcomitrella patens subsp. patens] gi|162690827|gb|EDQ77192.1| dsRNA-specific nuclease dicer and related ribonuclease [Physcomitrella patens subsp. patens] Length = 1662 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 109/249 (43%), Gaps = 40/249 (16%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ + +LE IG+ F RSLL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1316 MLSIDFDSLEASIGHKFRKRSLLVEAITHASRPSSGVPCYQRLEFVGDAVLDYLITRFLF 1375 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115 + G L+ + V+ E ++VA + +R SS L + +F+ IQ Sbjct: 1376 FKYTDLPPGRLTDLRAAAVNNENFARVAVKHSFHLHLRHGSSALETQIRNFVNDIQTELD 1435 Query: 116 ------------------ADVVESLIAALYLDGGIEVAGTFVDKYWK------QRALKSG 151 D++ES+ AL+LD +E D WK Q + Sbjct: 1436 KPGVNSFGLGDFKAPKVLGDILESIAGALFLDACLE-----TDHVWKVFEPLLQPMVTPE 1490 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 ELQE + EYK + R+G TV V + G+ + K+ A Sbjct: 1491 TLPMHPVRELQERCQQQAEAL-EYKAS-RAG----NVATVEVYVDGVQIGSAQNAQKKMA 1544 Query: 212 EQVAAAEVL 220 +++AA L Sbjct: 1545 QKLAARNAL 1553 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ +I Y A +LE ALT +S ++ SYER E LGD L ++S LF + E Sbjct: 1096 LKHQIDYPIAASKVLE-ALTAASCQETF--SYERAELLGDAYLKWVVSRRLFLKYPCKHE 1152 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR 98 G+L+ +VS Q A + L S+I+ Sbjct: 1153 GQLTRMRQQIVSNSVLYQYALDKGLQSYIQ 1182 >gi|297739192|emb|CBI28843.3| unnamed protein product [Vitis vinifera] Length = 287 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 23/153 (15%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ +GY+F N+ LLE+A TH+S + Q SYERLEF+GD +L LLI+ F + + Sbjct: 33 VEQILGYSFTNKRLLEEAYTHASCQKN-QFSYERLEFMGDSVLSLLITKEQFFLYPDLQP 91 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ------------ 115 G L+ ++ V E ++VA + L F+R + + + F +I+ Sbjct: 92 GRLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQIYEFAEAIKEYPLHSNGQIEV 151 Query: 116 ----ADVVESLIAALYLDGGIEVAGTFVDKYWK 144 ADVVES I A+++D VD WK Sbjct: 152 PKVLADVVESTIGAVFVD-----CNCSVDTVWK 179 >gi|47459246|ref|YP_016108.1| ribonuclease III [Mycoplasma mobile 163K] gi|81614213|sp|Q6KHN3|RNC_MYCMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|47458575|gb|AAT27897.1| ribonuclease III [Mycoplasma mobile 163K] Length = 246 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 97/210 (46%), Gaps = 25/210 (11%) Query: 25 KALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +ALTH + + H+ ESY+ LEF+GD IL + S +F HF + EGE S+ + + Sbjct: 29 QALTHKTYANEHANIESYDILEFIGDAILQMKSSIFIFQHFQNITEGEASL----IRAKN 84 Query: 83 TCSQVARE-------LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 CS E L + S LR++V I AD+ ES +AA+YLD G E Sbjct: 85 VCSSGLSELSKKLGLSKLLLISKGSEHLRENV-----KINADLFESFVAAIYLDLGDEKL 139 Query: 136 GTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 F+ + Y L+S K D K+ QE+ + EYK+T F Sbjct: 140 EEFLKEIFYPYISTTNLESIK---DPKSSFQEYIQSYSNEIIEYKITQLENELRSELFKA 196 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + +G+ G +K+ AE+ AA L+ Sbjct: 197 ELMHNGITYGVGFGKTKKVAEEEAATRALE 226 >gi|298207213|ref|YP_003715392.1| putative ribonuclease III [Croceibacter atlanticus HTCC2559] gi|83849849|gb|EAP87717.1| putative ribonuclease III [Croceibacter atlanticus HTCC2559] Length = 247 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 76/138 (55%), Gaps = 8/138 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFN 61 +S ++ +G+ N +KA TH S++ ++YERLEFLGD +L +I+ LF+ Sbjct: 19 FSAIQNLVGFKPTNLKPYKKAFTHRSLNEVDELGNAQNYERLEFLGDAMLSAIIAAHLFS 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG L+ +VS + +++ ++LDL S ++ +++ K F +I ++ E+ Sbjct: 79 AVPGGNEGYLTKMRAKVVSRKHLNELGKDLDLVSLVK--TNIPK--TQFGANIHGNLFEA 134 Query: 122 LIAALYLDGGIEVAGTFV 139 LI A+YLD G + F+ Sbjct: 135 LIGAIYLDKGYKSCKRFI 152 >gi|282901412|ref|ZP_06309337.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505] gi|281193691|gb|EFA68663.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505] Length = 238 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 105/200 (52%), Gaps = 7/200 (3%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LL+ ALTH ++S S +YE+LEF+GD ++ L+ + +L+ + G+ + + LVS Sbjct: 30 PLLDLALTHPTVSES--ANYEQLEFVGDAVVRLVAAVVLWESYPDCCVGDFAAIRSVLVS 87 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFV 139 +++ARE L ++ V+ D + + AD E+L+ ALYL + + ++ Sbjct: 88 DRILARLAREYGLELYLLVAGSATADNVGQESRL-ADAFEALLGALYLSTQNLILIRPWL 146 Query: 140 DKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEIS 196 D ++++ A ++ + + K LQEW A + V PEY+V + P + RF V + Sbjct: 147 DPHFQELAEQIRLDPAKLNYKAALQEWTQAGYKVLPEYRVVEVNQPQNPHERFLAQVWLH 206 Query: 197 GLAPAQGMDCSKRAAEQVAA 216 QG S +AAEQ AA Sbjct: 207 EKILGQGKGRSIKAAEQEAA 226 >gi|269115244|ref|YP_003303007.1| dsRNA-specific ribonuclease III [Mycoplasma hominis] gi|268322869|emb|CAX37604.1| dsRNA-specific ribonuclease III [Mycoplasma hominis ATCC 23114] Length = 231 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 100/209 (47%), Gaps = 15/209 (7%) Query: 20 RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 R A THSS S+ ++ ESY+ LEFLGD +LG ++S +F+++ + EG+ + + Sbjct: 28 RRYFCNAFTHSSYSNEHKNLESYQYLEFLGDSVLGFVVSDFIFDNYKNFGEGKATKLKSE 87 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI----E 133 +V +++ + +R + + +D++ES I A Y G+ E Sbjct: 88 IVDKNALGFLSKYYGFPNCLRTGKSAFANGKGIKSD--SDLIESFIGACYKACGLKFTKE 145 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + F+DK K+ KT+LQE + +G P Y+ ++ +F V Sbjct: 146 IIYHFIDKILKKF---HNSINEHPKTKLQELVQSNWGCRPRYE----DQALNNGKFESKV 198 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 I+ +G+ SK+ ++ AA++ LK+ Sbjct: 199 FINNNLYGEGIGQSKKESQTKAASDALKK 227 >gi|241895655|ref|ZP_04782951.1| dsRNA-specific ribonuclease [Weissella paramesenteroides ATCC 33313] gi|241871022|gb|EER74773.1| dsRNA-specific ribonuclease [Weissella paramesenteroides ATCC 33313] Length = 232 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 17 FANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F + LLE+ALT ++ + + Y+RLEFLGD ++ + LF F + EG L+ Sbjct: 17 FNDLKLLEEALTQANYINEHPGYKGGDYQRLEFLGDAVMQQSTAVYLFKRFPNWDEGRLT 76 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 S+V + ++REL L ++++ S+ D+ E+ I AL+LD G Sbjct: 77 ELRISMVQTRAFAALSRELHLDRYVQLGRGEELSGARNRDSLLEDLWEAFIGALFLDQGQ 136 Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEY-KVTFRSGPDHDPRF 189 EV F+++ + + G + + D K++LQE+ V Y K+ ++ +++ F Sbjct: 137 EVVMNFLEEMMFVK-IDEGFYDQFVDYKSKLQEYLQRHGTVKIAYTKLDEQAISNNEQVF 195 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAA 216 T+ V + G A G S + AE++AA Sbjct: 196 TIQVSVDGKPLATGEGKSTKDAEKMAA 222 >gi|294787403|ref|ZP_06752656.1| ribonuclease III [Parascardovia denticolens F0305] gi|315227028|ref|ZP_07868815.1| ribonuclease III [Parascardovia denticolens DSM 10105] gi|294484759|gb|EFG32394.1| ribonuclease III [Parascardovia denticolens F0305] gi|315119478|gb|EFT82611.1| ribonuclease III [Parascardovia denticolens DSM 10105] Length = 290 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 71/117 (60%), Gaps = 3/117 (2%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +ALTH S + H +YERLEFLGD +L L+ + L+ + EG++S + +V Sbjct: 33 LLIEALTHRSFANEHPGTRNYERLEFLGDAVLELVATETLYKAHPNYTEGQMSKIRSKVV 92 Query: 80 SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 S E+ +++AR+ L ++ I + R+D + SI D+VESL A++++ GIE A Sbjct: 93 SEESLAEIARDKLKISPMILLGIGERRDGGADKDSILCDIVESLFGAIFVEYGIETA 149 >gi|255534075|ref|YP_003094447.1| ribonuclease III [Pedobacter heparinus DSM 2366] gi|255347059|gb|ACU06385.1| ribonuclease III [Pedobacter heparinus DSM 2366] Length = 242 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 13/217 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L+ +G+ N +L + A H S++ + + S ERLEFLGD +LG +I+ LLF + Sbjct: 21 LKNILGFVPGNATLYKMAFRHRSVAKILKNGSRSSNERLEFLGDAVLGSVIAELLFKSYP 80 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V+ +Q+AR++ I V +V + S+ D E+LI Sbjct: 81 YKEEGFLTEMRSKIVNRANLNQLARKMGFDQLI-VFDQKAVNVQTKHHSMLGDAFEALIG 139 Query: 125 ALYLDGGIEVAGTF-----VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 A+YLD G F V Y L+ + + K++L EW + G + + Sbjct: 140 AVYLDKGYNFTREFLLKRIVKPYIDIHTLELTE--TNFKSKLIEWCQ-RHGKDITFDMME 196 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + FT+ + G + G D +K+ AE++AA Sbjct: 197 NEEGESAKLFTIQAVVEGESYGIGRDYNKKNAEKLAA 233 >gi|194246455|ref|YP_002004094.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma mali] gi|259491959|sp|B3R075|RNC_PHYMT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|193806812|emb|CAP18239.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma mali] Length = 225 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 99/203 (48%), Gaps = 7/203 (3%) Query: 21 SLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 SL + ++THSS ++ + + ERLEFLGD ++ LL++ L+ + EG +S + Sbjct: 17 SLYKMSITHSSYANENKLKKKDNERLEFLGDAVINLLMADYLYTKKEKENEGFMSKKRAQ 76 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 V ++ A+ + L ++I + + + SI A+ E+L A+YLD G +A Sbjct: 77 SVCEDSLVIYAKSIQLQNYILLGKGEKNK--NINNSILANAFEALFGAIYLDLGYYIAKK 134 Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 R L + D KT+LQE ++ T Y +T G DH FT V + Sbjct: 135 VFILIVIPR-LSNIIDNIDFKTQLQELVQSQ-KKTISYYITEEKGLDHSKEFTAEVFLEK 192 Query: 198 LAPAQGMDCSKRAAEQVAAAEVL 220 +G +K++AEQ AA VL Sbjct: 193 KNVGRGFGKTKKSAEQDAARYVL 215 >gi|296111745|ref|YP_003622127.1| dsRNA-specific ribonuclease RNaseIII [Leuconostoc kimchii IMSNU 11154] gi|295833277|gb|ADG41158.1| dsRNA-specific ribonuclease RNaseIII [Leuconostoc kimchii IMSNU 11154] Length = 233 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 8/212 (3%) Query: 17 FANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N LL +ALT + + + + Y+RLEFLGD ++ + ++ LF + S EG+L+ Sbjct: 18 FHNEELLREALTQRNYLNEHPDEPGRDYQRLEFLGDSVMQVSVAEYLFKRYPSWHEGQLT 77 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 ++V + + +R L IR+ S+ D+ E+ I ALYLD G Sbjct: 78 EMRIAMVQTRSFAHFSRVAHLNEGIRLGKGEEMSGARDRDSLLEDIWEAFIGALYLDQGS 137 Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV-TFRSGPDHDPRF 189 E TF+D+ A+ + F R D K+ LQE V Y+ + + ++ F Sbjct: 138 EAVRTFLDQTLFA-AIDTDFFDRFIDFKSRLQEKLQKNGAVDIAYRTESEKQMIGNEQLF 196 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V + A+G S + AE+VAA LK Sbjct: 197 EASVSVDNRELARGTGKSIKDAEKVAARAALK 228 >gi|300172910|ref|YP_003772075.1| ribonuclease III [Leuconostoc gasicomitatum LMG 18811] gi|299887288|emb|CBL91256.1| Ribonuclease III [Leuconostoc gasicomitatum LMG 18811] Length = 233 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 10/213 (4%) Query: 17 FANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F + SLL++ALT + + +Q+ Y+RLEFLGD ++ + ++ LF + + EG+L+ Sbjct: 18 FNDDSLLQEALTQRNYLNEHQDESGRDYQRLEFLGDSVMQVSVAEYLFKRYPNWHEGQLT 77 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 ++V + + +R + L IR+ S+ D+ E+ I ALYLD G+ Sbjct: 78 EMRIAMVQTRSFAHFSRVVHLNEGIRLGKGEEMSGARDRDSLLEDIWEAFIGALYLDQGL 137 Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGP--DHDPR 188 E F+D+ A+ + F R D K+ LQE K G Y T P + Sbjct: 138 EAVSVFLDQTLFA-AIDTDFFDRFIDFKSRLQEKLQ-KNGAVDIYYRTESEQPLAGNTQL 195 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F + + A+G S + AE+ AA LK Sbjct: 196 FEASISVDDHELARGTGKSIKDAEKAAARTALK 228 >gi|330945754|gb|EGH47188.1| ribonuclease III [Pseudomonas syringae pv. pisi str. 1704B] Length = 164 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/140 (35%), Positives = 69/140 (49%), Gaps = 2/140 (1%) Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF F A+EG+LS LV ET + +AR DL ++R+ S K SI AD Sbjct: 12 LFERFPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADA 71 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 +E+LI A+YLD G+E A V + +L +D KT LQE+ ++ P Y+ Sbjct: 72 LEALIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYE 131 Query: 177 VTFRSGPDHDPRFTVVVEIS 196 V G H F V EI+ Sbjct: 132 VVDIQGEPHCRTFFVECEIN 151 >gi|326334475|ref|ZP_08200686.1| ribonuclease 3 [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693244|gb|EGD35172.1| ribonuclease 3 [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 255 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 99/217 (45%), Gaps = 16/217 (7%) Query: 9 LEKRIGYAFANRSLLEKALT---HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +EK +G+ E+A T + S + SYERLEFLGD ILG +I+ +F + Sbjct: 22 MEKLLGFPPKEIRYYEEAFTLGSNRSQDLGHPISYERLEFLGDAILGAVIAHFVFLQAPN 81 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ +V + +Q+ EL L +++ RK + +I +++E+L+ A Sbjct: 82 KDEGDLTKMRTRMVRRDNLNQIGEELQLREYLQTE---RKSLL-LSGNISGNLLEALVGA 137 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWA---HAKFGVTPEYKVTF 179 +YLD G + A F+ + L K+ + EWA H E T+ Sbjct: 138 IYLDRGYQKATEFIHRILIDANLSMKDLENKVISYKSLMVEWAQKYHKTIAFIAEEDPTY 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + + F V I+ + D SK+ AE+ AA Sbjct: 198 KGKIKY---FQARVMINDKVYTKAHDTSKKKAEERAA 231 >gi|299473645|emb|CBN78039.1| RNAseIII [Ectocarpus siliculosus] Length = 523 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 9/128 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E +GY F +R LL ALTH S +H+ ++ LE+LGD +L L +S+ LF Sbjct: 17 VEHALGYCFGDRRLLLTALTHRSFCNETHTASGDFDELEWLGDSVLQLAVSSWLFRSAKG 76 Query: 66 AKE--GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 ++ G+LS V + C AR+L+L ++R+ + V T I AD E+++ Sbjct: 77 SRRSSGQLSATRQRFVDSHACESFARQLNLLPYLRIGHG--QPVGG--TKILADCFEAVL 132 Query: 124 AALYLDGG 131 A+Y+D G Sbjct: 133 GAVYVDAG 140 >gi|332638233|ref|ZP_08417096.1| ribonuclease III [Weissella cibaria KACC 11862] Length = 232 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 8/207 (3%) Query: 17 FANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F + SLLE+ALT ++ + + Y+RLEFLGD ++ + LF + EG L+ Sbjct: 17 FNDVSLLEEALTQANYINEHPNYTGNDYQRLEFLGDAVMQQSTAVYLFKRYPEWDEGRLT 76 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 S+V + ++REL L ++++ S+ D+ E+ I AL+LD G Sbjct: 77 ELRISMVQTRAFAALSRELHLDQYVQLGRGEELSGARNRDSLLEDLWEAFIGALFLDQGQ 136 Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEY-KVTFRSGPDHDPRF 189 +V F+ + + G + R D K++LQE V Y K+ R +++ F Sbjct: 137 DVVMHFLGDIMFNK-IDEGFYDRFVDYKSKLQEHLQRHGSVKITYTKLGERPVENNEQIF 195 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAA 216 TV V ++ A G S + AE+VAA Sbjct: 196 TVQVAVNDQVLATGEGKSTKEAEKVAA 222 >gi|147770295|emb|CAN62473.1| hypothetical protein VITISV_005321 [Vitis vinifera] Length = 287 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 18/143 (12%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ +GY+F N+ LLE+A TH+S + Q SYERLEF+GD +L LLI+ F + + Sbjct: 33 VEQILGYSFTNKRLLEEAYTHASCQKN-QFSYERLEFMGDSVLSLLITKEQFFLYPDLQP 91 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ------------ 115 G L+ ++ V E ++VA + L F+R + + + F +I+ Sbjct: 92 GRLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQIYEFAEAIKEYPLHSNGQIEV 151 Query: 116 ----ADVVESLIAALYLDGGIEV 134 ADVVES I A+++D V Sbjct: 152 PKVLADVVESTIGAVFVDCNCSV 174 >gi|170076696|ref|YP_001733334.1| ribonuclease III [Synechococcus sp. PCC 7002] gi|169884365|gb|ACA98078.1| ribonuclease III [Synechococcus sp. PCC 7002] Length = 239 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 97/192 (50%), Gaps = 9/192 (4%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL+ ALTH SIS ++YE+LEF+GD ++ L S +L+ + + GE + + LVS Sbjct: 29 LLDLALTHPSISPD--KNYEQLEFIGDAVVRLAASEVLYAEYPAEPVGEFAAIRSILVSD 86 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL-DGGIEVAGTFVD 140 T ++ A +L ++ + S+ AD E+++ AL+L + + ++D Sbjct: 87 RTLAEFAHRYNLKKYLSYHGHYH---GAGEISLLADAFEAMLGALFLTTNDLSLVHPWLD 143 Query: 141 KYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH-DPRFTVVVEISG 197 ++ + +A +K R + K LQ W+ ++ P Y+VT H + RF V++ Sbjct: 144 EHLRHKAAEIKQDPARENYKDALQTWSQGEYQKLPTYQVTENPEFRHEEERFLAEVKLGD 203 Query: 198 LAPAQGMDCSKR 209 +G+ SK+ Sbjct: 204 TLLGKGVGRSKK 215 >gi|284992411|ref|YP_003410965.1| ribonuclease III [Geodermatophilus obscurus DSM 43160] gi|284065656|gb|ADB76594.1| ribonuclease III [Geodermatophilus obscurus DSM 43160] Length = 270 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 89/191 (46%), Gaps = 12/191 (6%) Query: 28 THSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 TH S + H + ERLEFLGD +LGL+++ L+ EG L+ S+V+ + + Sbjct: 51 THRSYAYEHGGLPTNERLEFLGDSVLGLVVTDELYQRHPDLPEGRLAKLRASVVNMTSLA 110 Query: 86 QVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVAGTFV--- 139 VAR L R + + SI AD VE++I A+++ G++ A V Sbjct: 111 GVARRLGDGGLGPHLLLGRGEETTGGRDKDSILADAVEAIIGAVHVGLGLDTAAAIVHRL 170 Query: 140 -DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 D Q A + D KT LQE A+ G+ V +GPDH FT V ++G Sbjct: 171 FDPLLDQAATRGAGL--DWKTSLQELG-ARLGLGAPTYVVEDTGPDHAKTFTAAVVLAGT 227 Query: 199 APAQGMDCSKR 209 +G +K+ Sbjct: 228 VYGRGAGRTKK 238 >gi|126662618|ref|ZP_01733617.1| putative ribonuclease III [Flavobacteria bacterium BAL38] gi|126625997|gb|EAZ96686.1| putative ribonuclease III [Flavobacteria bacterium BAL38] Length = 260 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 13/147 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + + K +G+ +KA TH S + ++ +YERLEFLGD +LG +I+ L+N Sbjct: 34 FEKITKILGFEPKELRYYKKAFTHRSTNKVDEKGNPFNYERLEFLGDAMLGSVIAAHLYN 93 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVV 119 S EG L+ + +VS E +++ R+ +L F+ +V+S+ F +I ++ Sbjct: 94 EVPSGDEGYLTKMRSKIVSREHLNELGRDFNLVHFVESKVNSN------QFGENIHGNLF 147 Query: 120 ESLIAALYLDGGIEVAGTFV-DKYWKQ 145 E+ I A+YLD G F+ +K KQ Sbjct: 148 EAFIGAIYLDRGFTYCEMFIRNKIIKQ 174 >gi|39939094|ref|NP_950860.1| dsRNA-specific ribonuclease [Onion yellows phytoplasma OY-M] gi|81402281|sp|Q6YPW7|RNC_ONYPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|39722203|dbj|BAD04693.1| dsRNA-specific ribonuclease [Onion yellows phytoplasma OY-M] Length = 238 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 99/202 (49%), Gaps = 11/202 (5%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFD 64 TL + + N +L ++ALTHSS S+ QE ERLEFLGD I+GLL++ L++ Sbjct: 6 TLFQTLNITPQNLTLYKQALTHSSYSNEQNPPQEDNERLEFLGDAIVGLLMADYLYSQ-S 64 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTSIQADVVESLI 123 EG ++ + V + + A ++L +++ + + KD + SI AD E+L Sbjct: 65 KEDEGIMTKKRAQAVCERSLTIYAHNIELQNYLLLGKGEKNKDFNA--KSIIADTFEALF 122 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLD G A K+ + D KT+LQE ++ T +YK+ GP Sbjct: 123 GAIYLDLGYLTAKKVFHNIVLPHLAKT-IYIIDFKTQLQEIVQSE-KKTIQYKIVQEQGP 180 Query: 184 DHDPRFT--VVVEISGLAPAQG 203 H F V +E + L +G Sbjct: 181 AHSKNFVAEVYLEKNLLGTGEG 202 >gi|115292171|emb|CAK32533.1| putative dicer-like protein [Mucor circinelloides] Length = 1529 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 23/149 (15%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +GY F N +L+ +ALTH+S+++S Y+RLEFLGD +L ++ LF + +A G L Sbjct: 1258 LGYEFQNEALIAEALTHASVTNSSVPCYQRLEFLGDAVLDFCVTNYLFEKYHTAPPGTLH 1317 Query: 73 VRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM-------------------T 112 S V+ + S + +L L IR S+ V F Sbjct: 1318 DLRKSSVNNDILSVLCIQLGLHVHIRHFSTTFPSAVKQFQELVVASQDEKGEYWLNFNPP 1377 Query: 113 SIQADVVESLIAALYLDGGIE---VAGTF 138 + +DVVESLI A+++D G V G F Sbjct: 1378 KVLSDVVESLIGAVFVDAGFNLDPVLGLF 1406 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 20/112 (17%) Query: 37 QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 ++ Y+RLEFLGD +L + ST +F + E EL+ ++S + A +L L + Sbjct: 1076 EKDYQRLEFLGDSVLKFITSTYVFVTLPISNEFELTESRMRMISNTALFKSAIQLRLYEY 1135 Query: 97 I----------RVSSDLRKDVCSFMT----------SIQADVVESLIAALYL 128 I R + L KD + M ADVVES + A YL Sbjct: 1136 ICSQNLPRRFYRPPNYLCKDDSAEMIKSLTYHKLSDKTLADVVESTLGASYL 1187 >gi|17231599|ref|NP_488147.1| ribonuclease III [Nostoc sp. PCC 7120] gi|17133242|dbj|BAB75806.1| ribonuclease III [Nostoc sp. PCC 7120] Length = 202 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 4/143 (2%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +YE+LEF+GD ++ L + +L+ + G+ + + LVS +Q+ARE L + Sbjct: 6 NYEQLEFVGDAVVRLAAAVMLWETYPDCPVGDFAAIRSVLVSDRILAQLAREYGLELHLL 65 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRR 155 V+ D + + AD E+++ ALYL +E+ ++D +++Q A ++ R Sbjct: 66 VAGSATSDKIGQESRL-ADAFEAVLGALYLSTSNLELIRPWLDHHFRQLAAEIRLDPARL 124 Query: 156 DAKTELQEWAHAKFGVTPEYKVT 178 + K LQEW A+F V PEY+V Sbjct: 125 NYKAALQEWTQAQFKVLPEYRVV 147 >gi|270001216|gb|EEZ97663.1| hypothetical protein TcasGA2_TC016208 [Tribolium castaneum] Length = 1063 Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 77/134 (57%), Gaps = 6/134 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +G F + LL +A T S+ ++ S +RLEFLGD +L L+ S L+ +F Sbjct: 869 TKFEESVGLQFNHIRLLARAFTDRSVGYTNLTLGSNQRLEFLGDTVLQLIASEYLYKYFP 928 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS+ +SLV+ T + V +L ++++ V ++ + ++ T +AD++E+ I Sbjct: 929 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMSNYA-VYNNPKAEL---KTKDRADLLEAFIG 984 Query: 125 ALYLDGGIEVAGTF 138 ALY+D G+E F Sbjct: 985 ALYVDQGLEFCEVF 998 Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 13/124 (10%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S+I+H+ ERLEFLGD ++ L S LF F +EG L+ ++V + + + Sbjct: 718 TESNITHN-----ERLEFLGDAVVEFLSSIHLFYTFPDLEEGGLATYRAAIVQNQHLAVL 772 Query: 88 ARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 A+ L L F+ + SDL D+ + A+ E+L+ AL+LDGGI V VD+ + + Sbjct: 773 AKTLKLDQFMLYAHGSDLCHDL--ELRHAMANCFEALMGALFLDGGINV----VDRVFSE 826 Query: 146 RALK 149 K Sbjct: 827 TLFK 830 >gi|281421655|ref|ZP_06252654.1| ribonuclease 3 [Prevotella copri DSM 18205] gi|281404289|gb|EFB34969.1| ribonuclease 3 [Prevotella copri DSM 18205] Length = 360 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 15/226 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + +G+ + S + AL H SI H + + ERLEFLGD +L ++ +++ Sbjct: 20 YLSLYEILGFYPHDISYYKMALLHKSIMHRNSKGKPVNNERLEFLGDAVLDAVVGDIVYQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV +T +++A+E+ + I +S+ S+M + E+ Sbjct: 80 HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGINQLI-LSNGHSSSHNSYMG---GNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G + F+ K + + K + K++L EW+ K V ++ V Sbjct: 136 LVGAIYLDRGYDACMYFMQKRILAQMINIDKVAYKEVNFKSKLIEWSQ-KNRVKLDF-VM 193 Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 D + P FT V + G+ G SK+ ++QVA+ L++ Sbjct: 194 LDQQKDKNGSPIFTYQVVLEGVDGGVGKGYSKKESQQVASKTSLEK 239 >gi|307169891|gb|EFN62400.1| Ribonuclease 3 [Camponotus floridanus] Length = 1167 Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 6/138 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T SI ++ S +RLEFLGD +L L++S L+ Sbjct: 990 KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1049 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ +T + V +L + + + T +AD++E+ Sbjct: 1050 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGN----PKAELKTKDRADLLEAF 1105 Query: 123 IAALYLDGGIEVAGTFVD 140 + ALY+D G++ F D Sbjct: 1106 LGALYVDKGLKYCHVFCD 1123 Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 13/128 (10%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 K T SSI+H+ ERLEFLGD ++ L S LF+ F +EG L+ ++V + Sbjct: 838 KTETESSIAHN-----ERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHL 892 Query: 85 SQVARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 + +A++L L ++ + SDL D+ + A+ E+L+ +L+LDGGIEVA D+ Sbjct: 893 AVLAKKLSLEEYMLYAHGSDLCHDL--ELRHAMANCFEALMGSLFLDGGIEVA----DRV 946 Query: 143 WKQRALKS 150 + + KS Sbjct: 947 FGETLFKS 954 >gi|228472309|ref|ZP_04057075.1| ribonuclease 3 [Capnocytophaga gingivalis ATCC 33624] gi|228276512|gb|EEK15236.1| ribonuclease 3 [Capnocytophaga gingivalis ATCC 33624] Length = 232 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 100/226 (44%), Gaps = 19/226 (8%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+ +G+ E+A T ++ S SYERLEFLGD ILG +I+ +F Sbjct: 1 MEQLLGFPPKEIHYYEEAFTLGTVRTDSAQPHISYERLEFLGDAILGAVIAHFVFLQAPD 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT-SIQADVVESLIA 124 EG+L+ +V E +Q+ +L L + L D + ++ +I +++E+L+ Sbjct: 61 KNEGDLTKMRTRMVRRENLNQIGEDLRLREY------LLADKHTLLSGNIAGNLLEALVG 114 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWA---HAKFGVTPEYKVT 178 A+YLD G A F+ + L K+ + EWA H E T Sbjct: 115 AIYLDRGYSKATEFIHRILIDTNLSMRDLENKVISYKSLMVEWAQKYHKTIAFVSEEDPT 174 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 ++ + F V I+ A+ D SK+ AE+ AA R G Sbjct: 175 YKGRTKY---FQAKVMINDKVFAKAHDTSKKKAEERAAKRAFFRAG 217 >gi|218189575|gb|EEC72002.1| hypothetical protein OsI_04862 [Oryza sativa Indica Group] Length = 1858 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 23/152 (15%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE ++GY+F+ + LL +ALTH S + YERLEFLGD +L +L++ LFN Sbjct: 1175 FEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHK 1234 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQ-------- 115 EGEL+ ++ V+ E +QVA + + F++ SS L D + ++ ++ Sbjct: 1235 DTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVE 1294 Query: 116 -------------ADVVESLIAALYLDGGIEV 134 D+VES+ A+ LD +++ Sbjct: 1295 LLSDGLPKGPKVLGDIVESIAGAILLDTKLDL 1326 >gi|224116530|ref|XP_002317324.1| predicted protein [Populus trichocarpa] gi|222860389|gb|EEE97936.1| predicted protein [Populus trichocarpa] Length = 217 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 75/142 (52%), Gaps = 23/142 (16%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +EK + Y F N+ LE+ALTHSS + S SY+R+EFLGD LGL +S ++ + Sbjct: 8 VEKILNYKFKNKRHLEEALTHSSYTDS--ASYQRMEFLGDAALGLALSNYVYLAYPQLDP 65 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLRKDVCSFMT 112 G LS+ + +S E ++VA + L F+R VS + D + Sbjct: 66 GHLSLLRAANISTEKLARVAIKHGLYRFVRHNATALDDKVKEFSDAVSGEDDDDALVYGG 125 Query: 113 SIQ-----ADVVESLIAALYLD 129 SI+ AD+VES+ AA+Y+D Sbjct: 126 SIKAPKILADIVESVAAAVYVD 147 >gi|222619725|gb|EEE55857.1| hypothetical protein OsJ_04485 [Oryza sativa Japonica Group] Length = 1839 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 23/152 (15%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE ++GY+F+ + LL +ALTH S + YERLEFLGD +L +L++ LFN Sbjct: 1175 FEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHK 1234 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQ-------- 115 EGEL+ ++ V+ E +QVA + + F++ SS L D + ++ ++ Sbjct: 1235 DTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVE 1294 Query: 116 -------------ADVVESLIAALYLDGGIEV 134 D+VES+ A+ LD +++ Sbjct: 1295 LLSDGLPKGPKVLGDIVESIAGAILLDTKLDL 1326 >gi|301107618|ref|XP_002902891.1| ribonuclease 3, putative [Phytophthora infestans T30-4] gi|262098009|gb|EEY56061.1| ribonuclease 3, putative [Phytophthora infestans T30-4] Length = 312 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 20/186 (10%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI--SHSYQE-------SYERLEFLGDRILGLLISTLL 59 L++RIG F + +LL+ ALTH ++ E S LEFLGD +LG + + Sbjct: 126 LQERIGVKFQDVTLLQSALTHHGCLPTNPVPEDVPVVRLSNRSLEFLGDSLLGAAAAGYV 185 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-----VCSFMTSI 114 + +EG+LS ++LV+ +T S+++ +L + + + V +I Sbjct: 186 YQMLPRHQEGQLSRAKSALVNNDTLSKISADLGITDLLLWPPGFNEARGAPLVAKGRVTI 245 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD----AKTELQEWAHAKFG 170 A VESLIAA+YLD G+E A FV R+++ RD ELQ + Sbjct: 246 AAGSVESLIAAIYLDQGMETAMKFVTTQILPRSVEYAT--RDVIWEPIVELQNLLQGHYY 303 Query: 171 VTPEYK 176 P YK Sbjct: 304 GQPVYK 309 >gi|115441737|ref|NP_001045148.1| Os01g0909200 [Oryza sativa Japonica Group] gi|75321191|sp|Q5N870|DCL3A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3a; AltName: Full=Dicer-like protein 3a; Short=OsDCL3a gi|56785369|dbj|BAD82327.1| putative Endoribonuclease Dicer homolog [Oryza sativa Japonica Group] gi|113534679|dbj|BAF07062.1| Os01g0909200 [Oryza sativa Japonica Group] Length = 1651 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 23/152 (15%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE ++GY+F+ + LL +ALTH S + YERLEFLGD +L +L++ LFN Sbjct: 1241 FEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHK 1300 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQ-------- 115 EGEL+ ++ V+ E +QVA + + F++ SS L D + ++ ++ Sbjct: 1301 DTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVE 1360 Query: 116 -------------ADVVESLIAALYLDGGIEV 134 D+VES+ A+ LD +++ Sbjct: 1361 LLSDGLPKGPKVLGDIVESIAGAILLDTKLDL 1392 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 4/94 (4%) Query: 7 STLEKRIGYAFANRS--LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S L IGY+ +N S L+ +A+T S + S ERLE LGD +L +S LF F Sbjct: 1032 SQLRSEIGYSDSNISSFLILEAITTLRCSEDF--SMERLELLGDSVLKYAVSCHLFLKFP 1089 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + EG+LS ++ T ++ E ++ ++R Sbjct: 1090 NKDEGQLSSIRCHMICNATLYKLGIERNVQGYVR 1123 >gi|260436673|ref|ZP_05790643.1| ribonuclease III [Synechococcus sp. WH 8109] gi|260414547|gb|EEX07843.1| ribonuclease III [Synechococcus sp. WH 8109] Length = 241 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 94/205 (45%), Gaps = 7/205 (3%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +L+++ALTH +S + ERLEFLGD +L L + + G S LVS Sbjct: 28 ALVDQALTH--VSSGRTRNLERLEFLGDAVLRLAATEFIDRDHTDLAVGACSNLRAQLVS 85 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFV 139 + V LD+ + V + D S + ++AD E+LI ALY G +E ++ Sbjct: 86 DRWLADVGSALDIEQHLLVGRHAQGDR-SAQSRLRADATEALIGALYSALGNVEAIHRWL 144 Query: 140 DKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEIS 196 +W +A+ + + + KT LQEW+ + P Y S DP RF V I Sbjct: 145 TPHWCATAQAVLTNPHQFNGKTTLQEWSQGQGLGLPNYATEECSRQHGDPERFRCRVSIQ 204 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLK 221 A+ S++ AEQ AA L+ Sbjct: 205 DRELAEAKGRSRKEAEQNAATAALQ 229 >gi|313206470|ref|YP_004045647.1| rnase iii [Riemerella anatipestifer DSM 15868] gi|312445786|gb|ADQ82141.1| RNAse III [Riemerella anatipestifer DSM 15868] gi|315023589|gb|EFT36593.1| Ribonuclease III [Riemerella anatipestifer RA-YM] gi|325336084|gb|ADZ12358.1| dsRNA-specific ribonuclease [Riemerella anatipestifer RA-GD] Length = 247 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 11/210 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK +G S ++A + S S Q +Y+RLEFLGD +LG ++S L+ + E Sbjct: 30 LEKILGIQPKEVSWYQEAFSLKSTSS--QLNYDRLEFLGDAVLGSIVSYYLYRQYPQESE 87 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V+ + +Q+ +L+L S + K+ F+ + +++E+L+ A+Y+ Sbjct: 88 GFLTQMKSKIVNRKNLNQIGEKLNLTSLV------LKNGSKFVADLSGNLLEALVGAIYM 141 Query: 129 DGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G E V LK K+ L EW+ K + +YK P Sbjct: 142 DFGYEKCQKVVLSKILTHSEMLKLENKIISYKSLLLEWSQ-KNKIKIDYKTEEEFLPSKV 200 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 F + + G A + SK+ +E+ AA Sbjct: 201 KMFKTYIFVGGSKVASATETSKKKSEEKAA 230 >gi|312384091|gb|EFR28902.1| hypothetical protein AND_02573 [Anopheles darlingi] Length = 1155 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 107/226 (47%), Gaps = 18/226 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 E IG F + LL +A T S ++ + +RLEFLGD +L L+ + ++ HF Sbjct: 679 FEDSIGVKFNHIRLLARAFTDRSRGYTALTLGTNQRLEFLGDAVLKLIGTEHVYRHFPKH 738 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 L+ N LVS T + V +L +A + +S+ +AD++E+ I AL Sbjct: 739 HSQHLADWRNQLVSNRTLATVCDDLGMAHYAIISN----PKTELKMKDRADLLEAFIGAL 794 Query: 127 YLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAK---FGVTPE---YKVT 178 Y+D G+ + + + + L + R D KT+LQ+ HA +G TP+ YK+ Sbjct: 795 YVDKGLLHCEKLCEVCLFPRLQELIENQERNDPKTKLQQHCHATHPMYGSTPDHPLYKLI 854 Query: 179 FRSGPDHDPRFTVVVEISG--LAPAQGMDCSKRAAEQVAAAEVLKR 222 G + TV V G LA A G S R AE+ AA L++ Sbjct: 855 GCIGSMKNRVCTVGVYFRGKQLAIANGH--SIRQAEENAARLALEQ 898 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 72/170 (42%), Gaps = 48/170 (28%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----------------------------------- 33 LEK+I Y F NR L+ ALTH + + Sbjct: 463 LEKQIDYRFTNRYTLQLALTHRTYANNGGTNPDHVRNVLANCGILNMNPRKRNVHSMIRP 522 Query: 34 HSYQES--------YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 HS ++S ERL FLGD ++ S LF+ F + EG LSV ++V + Sbjct: 523 HSGKKSETAFNRRHNERLAFLGDAVIVFSASVPLFHMFPNLGEGGLSVYRGAIVEKQHLV 582 Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 +A++L L F+R + + AD ++L+ AL LDGGI VA Sbjct: 583 VLAKKLHLEEFLRCAHG-----SAASNRTVADCFQALMGALLLDGGIAVA 627 >gi|163786802|ref|ZP_02181250.1| hypothetical protein FBALC1_16492 [Flavobacteriales bacterium ALC-1] gi|159878662|gb|EDP72718.1| hypothetical protein FBALC1_16492 [Flavobacteriales bacterium ALC-1] Length = 247 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 22/200 (11%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L+K +G+ ++SL KA TH S++ + +YERLEF+GD +L +I+ LF Sbjct: 23 LKKILGFKPKSKSLYIKAFTHRSMNIKNKNGNAINYERLEFVGDAMLSSVIAAYLFEQVP 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +VS E +++ ++L L ++ R +F +I ++ E+L+ Sbjct: 83 HGDEGYLTKMRSKVVSREHLNELGKDLGLIDLVQS----RIPKSNFGNNIHGNLFEALVG 138 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKS--------GKFRRDAKTELQEWAHAKFGVTPEYK 176 A+YLD G + F +K+ +R + GK K+ L EW K T +Y Sbjct: 139 AIYLDKGYK----FCEKFIYKRVINPYVDIETLEGKV-ISYKSLLIEWCQ-KEKNTFDYN 192 Query: 177 VTFRSGPDHDPRFTVVVEIS 196 V +G D F+V + I+ Sbjct: 193 VYEDTGKDELKHFSVKLSIN 212 >gi|94272417|ref|ZP_01292119.1| Ribonuclease III [delta proteobacterium MLMS-1] gi|93450139|gb|EAT01469.1| Ribonuclease III [delta proteobacterium MLMS-1] Length = 156 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 1/134 (0%) Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +LV+ E + +AR+L L FIR+ SI A E+L+ A+YLDGG E A Sbjct: 1 ALVNEEHLAGMARQLALGEFIRLGRGEEATGGRDKPSILAATFEALVGAVYLDGGYEPAL 60 Query: 137 TFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + + R D+K+ LQE + G P Y + GPDHD RFTV VE+ Sbjct: 61 ALLRPLFAPWVANPPLPRISDSKSALQEVLQQRHGEGPVYYLENEEGPDHDKRFTVRVEL 120 Query: 196 SGLAPAQGMDCSKR 209 G +G K+ Sbjct: 121 QGKVLGRGRGRGKK 134 >gi|311977725|ref|YP_003986845.1| probable ribonuclease 3 [Acanthamoeba polyphaga mimivirus] gi|82000280|sp|Q5UQT7|RNC_MIMIV RecName: Full=Probable ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|55416962|gb|AAV50612.1| RNAse III (dsRNA binding motif) [Acanthamoeba polyphaga mimivirus] gi|308204768|gb|ADO18569.1| probable ribonuclease 3 [Acanthamoeba polyphaga mimivirus] Length = 538 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 100/200 (50%), Gaps = 20/200 (10%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 SI ++S ERL+FLGD ++ +I LFN + + EG L+ L ++E+ +A++ Sbjct: 341 SIVRLQKKSNERLQFLGDAVIHFIIGEYLFNKYADSGEGYLTRLRCKLENSESLFFLAKQ 400 Query: 91 LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 D++S++ +S ++ +I +E+ + ALYL+ G+ GT KQ L+ Sbjct: 401 SDISSYLLISQNIEVLHGRENVNIIGGGLEAFVGALYLNIGL---GTV-----KQFLLEI 452 Query: 151 GKFRRD----AKTE-------LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 + D A+ E LQ + K+G P YK+ GPDH FT+ + + Sbjct: 453 MRIELDINQIAENETNYKDLILQLYNKNKWG-HPVYKILKEEGPDHCKIFTMGLYLGNKL 511 Query: 200 PAQGMDCSKRAAEQVAAAEV 219 G SK+ AEQ+A+ ++ Sbjct: 512 MGIGKASSKKKAEQIASKKM 531 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/216 (22%), Positives = 100/216 (46%), Gaps = 14/216 (6%) Query: 17 FANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 + + + E+A+ H S+I ++YERLE+LGD I ++I+ ++ ++ EG L+ Sbjct: 40 YVDMHIFEEAMLHVSTIYEESDKTYERLEYLGDAIFHMIITEYFYHRYNEENEGFLTRLR 99 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 + ++ ++++ L L +F+++ S I D+ ES I A YL+ G++ Sbjct: 100 IRIERGDSMVELSKNLGLNNFVQIYG------ISLNDHILEDIFESFIGAFYLNFGMKYT 153 Query: 136 GTFVDKYWKQRALKSGKFRRDAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 F+ K ++ S D + L+ + K+G P+Y P ++ R + Sbjct: 154 RLFIIKLIEKHKNLSELIAYDDNYKDLLLRYFHQMKWG-HPKYIEEIVIDPKNNQRNKFI 212 Query: 193 VEISGL---APAQGMDCSKRAAEQVAAAEVLKREGI 225 ++ G +K+ +EQ+A+ L G+ Sbjct: 213 SKVKNPFDKVIGIGSASTKKKSEQLASQMALTNLGV 248 >gi|255577153|ref|XP_002529460.1| ribonuclease III, putative [Ricinus communis] gi|223531076|gb|EEF32926.1| ribonuclease III, putative [Ricinus communis] Length = 342 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 22/143 (15%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S +EK + Y F N+ L+E+ALTHSS + S +Y+RLEF+GD LGL +S +F + Sbjct: 8 SAVEKILNYTFKNKQLVEEALTHSSYTAS--PNYQRLEFIGDAALGLALSNHVFLAYPDL 65 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSF--------------- 110 G LS+ + +S E ++VA + L F+R ++ D V F Sbjct: 66 DPGHLSLLRAANISTEKLARVAVKHGLFRFLRHNATALDDKVKEFSDAVLREEDEAVAHG 125 Query: 111 ----MTSIQADVVESLIAALYLD 129 + AD+VES+ AA+Y+D Sbjct: 126 GTVKAPKVLADIVESVAAAVYVD 148 >gi|158334880|ref|YP_001516052.1| ribonuclease III [Acaryochloris marina MBIC11017] gi|158305121|gb|ABW26738.1| ribonuclease III [Acaryochloris marina MBIC11017] Length = 247 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 92/208 (44%), Gaps = 26/208 (12%) Query: 5 RYSTLEKRI------GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 R LEK I G A LL+ ALTH S S + +YE+LEF+GD ++ LL + L Sbjct: 8 RQRQLEKLIQRLGLPGNAPIRWDLLDLALTHPSASG--RANYEQLEFVGDSVVRLLAAVL 65 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L GE S + LVS + +A L F+ + KD S AD Sbjct: 66 LQAENAQGSVGEWSAIRSVLVSDRHLATLAANYGLDRFLLLGPSTLKDRRG-QDSRLADA 124 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDA-----KTELQEWAHAKFGV 171 E+++ ALYL G + + W Q L K+ + R D K LQ+W A + Sbjct: 125 FEAVLGALYLSTG----DLSLIQPWLQDPLRNKAEQVRIDPAYQNYKAALQQWTQAVYQQ 180 Query: 172 TPEYKVTFRSGPDHDP------RFTVVV 193 PEY+V S P DP RFT V Sbjct: 181 LPEYRVQETSPPSQDPSDVMADRFTAEV 208 >gi|166368821|ref|YP_001661094.1| ribonuclease III [Microcystis aeruginosa NIES-843] gi|166091194|dbj|BAG05902.1| ribonuclease III [Microcystis aeruginosa NIES-843] Length = 234 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 6/159 (3%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL+ ALTH SIS ++YE+LEF+GD ++ L + +L + A GE + + +VS Sbjct: 31 LLDLALTHPSISRD--KNYEQLEFVGDSVVRLAAAEVLLETYPEALVGEFAALRSMMVSD 88 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV-AGTFVD 140 T ++ A ++ VSS D ++ + AD E+++ ALYL V +++D Sbjct: 89 RTLAEFADRYGFERYLLVSSSTSIDQAGRISRL-ADAFEAVLGALYLSTQTMVLVRSWLD 147 Query: 141 KYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 + +++A ++ R++ K LQEW A + P+Y V Sbjct: 148 EPLREKAAEIRRDPARQNYKDALQEWTQATYKKLPQYLV 186 >gi|332519389|ref|ZP_08395856.1| ribonuclease III [Lacinutrix algicola 5H-3-7-4] gi|332045237|gb|EGI81430.1| ribonuclease III [Lacinutrix algicola 5H-3-7-4] Length = 247 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 12/205 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 + T+ + IGY + A TH S+ S +YERLEFLGD +L +I+ L+ Sbjct: 19 FITVSQIIGYKPKTIKHFKTAFTHRSMNIRNSKGNIVNYERLEFLGDAMLSAVIAHHLYE 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 S EG L+ + +VS E +++ R+L L + V S + K F +I ++ ES Sbjct: 79 EVPSGDEGYLTKMRSKVVSREHLNELGRDLKLINL--VESKIPKG--QFGDNIHGNLFES 134 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWAHAKFGVTPEYKVT 178 L+ A+YLDGG + F+ K + + K+ L EW K T +Y V Sbjct: 135 LVGAIYLDGGFKACEKFIYKRVITPFVDIEQLEGKVISYKSLLIEWCQ-KEKKTFDYNVY 193 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQG 203 +G D+ F+V + I ++G Sbjct: 194 EDTGNDNIRHFSVKLSIDNKIVSKG 218 >gi|262340868|ref|YP_003283723.1| ribonuclease III [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272205|gb|ACY40113.1| ribonuclease III [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 250 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 107/224 (47%), Gaps = 24/224 (10%) Query: 9 LEKRIGYAFANRSLLEKALTHS------SISHSYQESYERLEFLGDRILGLLISTLLFNH 62 L K +G+ N L++ +S +++ +Y +++RLEFLGD +L +IS L Sbjct: 22 LIKILGFCPKNTKFLKEVFIYSFSTKRKNLNPNYSVNFQRLEFLGDAVLNSIISHFLCEK 81 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 KEGEL+ + +V ++++R+L +A L K V S +I + +E+L Sbjct: 82 LPEKKEGELTQIRSKIVCRRNLNEISRKLTIADIF-----LEKSVTS--DNILGNTLEAL 134 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWAHA-KFGVTPEYKVT 178 I +YL+ G + FV + + K + + K + EW+ KF + + T Sbjct: 135 IGFIYLEIGYQGCKNFVHQKILHSHVNITKLQNEIFSYKVWMIEWSQKNKFLINFK---T 191 Query: 179 FRSGPDHDPRFTVVV-EISGLA---PAQGMDCSKRAAEQVAAAE 218 FR D D + + E++ L +G SK+ +E++AA E Sbjct: 192 FREKEDKDKNLIIYLSELTILGFEIQTKGRGSSKKKSEEMAAKE 235 >gi|282858948|ref|ZP_06268088.1| ribonuclease III [Prevotella bivia JCVIHMP010] gi|282588330|gb|EFB93495.1| ribonuclease III [Prevotella bivia JCVIHMP010] Length = 333 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 111/225 (49%), Gaps = 13/225 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + G + S + AL H S+S ++ + ERLEFLGD +L +++ +++ Sbjct: 20 YLSLYQITGLIPHDISYYKTALLHKSVSRRNEKGKLVNNERLEFLGDAVLDCVVADIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F + +EG L+ + LV ET ++V+ E+ + ++ + C ++ + E+ Sbjct: 80 RFPNKREGFLTNTRSKLVKRETLNKVSTEMGIDKMLKQNGHTVTHNC----NVAGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEY-KV 177 L+ ALYLD G + F+ + ++ +R + K++L EW K VT + +V Sbjct: 136 LVGALYLDHGYDACMNFMRNRVFGHLVNVEKMAYREMNYKSKLIEWTQ-KNKVTVIFDEV 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + +P F V I + +G +K+ ++Q AA + +R Sbjct: 195 NTSTDENGNPVFLAQVIIGNVRCEEGKGFTKKESQQNAAKQTYRR 239 >gi|78780081|ref|YP_398193.1| RNAse III [Prochlorococcus marinus str. MIT 9312] gi|78713580|gb|ABB50757.1| RNAse III [Prochlorococcus marinus str. MIT 9312] Length = 249 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 7/204 (3%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +A HSS +YE+LEF GD +L L S + ++ GE S +VS E Sbjct: 42 FNQAFIHSSEDKII--NYEKLEFFGDAVLRLAASNFIEKNYPQMSVGERSELRAQIVSDE 99 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141 +++ R++D+ I D S +I + E+LI A+Y I+ ++D Sbjct: 100 WLTKLGRKIDIEKLIIKGPKALGDQNS-KNTIIGEATEALIGAVYKCFNSIQEVNLWLDD 158 Query: 142 YWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGL 198 W++ + ++ +KT LQEW +K P YK+ S + DP RF+ + + GL Sbjct: 159 IWEEDSEIFLKAPYKFKSKTVLQEWCQSKGFDLPVYKIIEVSKKNGDPKRFSCDIFVEGL 218 Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222 + S + AE AA ++++ Sbjct: 219 KESSAFGKSHKQAETNAAKVLIEK 242 >gi|260591983|ref|ZP_05857441.1| ribonuclease 3 [Prevotella veroralis F0319] gi|260536267|gb|EEX18884.1| ribonuclease 3 [Prevotella veroralis F0319] Length = 354 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 13/225 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L IG+ N + AL H SI+ + + ERLEFLGD IL ++ +++ Sbjct: 20 YLSLYHIIGFIPHNIDYYKTALLHKSIARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + +V +T +++A+E+ + I +S+ S+M + E+ Sbjct: 80 HFPYKREGFLTNTRSKIVQRDTLNRLAKEMGINQLI-LSNGHSSSHNSYMG---GNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYK-V 177 L+ ALYLD G F+ K + K + K++L EW+ K V E++ + Sbjct: 136 LVGALYLDHGYNACMEFMRKQILGELINIDKVAYKEVNFKSKLIEWSQ-KNKVNMEFRLI 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F V + +A +G SK+ +Q AA L+R Sbjct: 195 EHEKDKQGSPTFHFQVFMEEIACGEGRGYSKKEGQQEAAKLTLQR 239 >gi|167234451|ref|NP_001107840.1| Dicer-2 [Tribolium castaneum] gi|270002830|gb|EEZ99277.1| hypothetical protein TcasGA2_TC001108 [Tribolium castaneum] Length = 1623 Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 2/108 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ +E+R+GY F NR+ L +ALTHSS S + SYERLEFLGD +L LI+ +F H Sbjct: 1370 QWREIEQRLGYTFTNRAFLLQALTHSSYSPNRITLSYERLEFLGDAVLDFLITCYIFEHC 1429 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSF 110 + G+++ +SLV+ T + + F + ++S+L+ + F Sbjct: 1430 GHLEPGQVTDLRSSLVNNNTFASLVVRCGFHKFLLMMNSNLQGHIDKF 1477 >gi|33862159|ref|NP_893720.1| putative ribonuclease III [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634377|emb|CAE20062.1| putative ribonuclease III [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 249 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 7/204 (3%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +ALTHSS ++ +YE+LEF GD +L L S + + S G S + +VS E Sbjct: 42 FNEALTHSSANNIV--NYEKLEFFGDAVLRLSASDFIERTYKSMSVGSRSELRSQIVSDE 99 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141 +++ +++ + I D S +I A+ E+LI A+Y I ++D Sbjct: 100 WLTELGKKIFIEKVIIKGPKAMGDENS-KDTIIAETSEALIGAIYKCFNSINEVNIWLDN 158 Query: 142 YWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGL 198 +WK+ A + +AK+ LQEW ++ P YK+ S DP RF+ + I+G Sbjct: 159 FWKKDAELYLQAPHKYNAKSALQEWCQSQGFDLPIYKIYEVSKNHGDPKRFSCEIYINGS 218 Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222 A S + AE+ AA+ ++++ Sbjct: 219 KKAFSFGHSHKKAEKNAASILIQK 242 >gi|167046026|gb|ABZ10544.1| dicer-like protein C [Placozoa sp. DMJ-2008] Length = 352 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 35/162 (21%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSA 66 LEK IGY+F N+ + +ALTHSS H ES ++LEFLGD IL +I+ FN A Sbjct: 185 LEKVIGYSFQNKLFMIRALTHSSYHHHNIAIESNQKLEFLGDTILQYIIARHFFNSHPDA 244 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSI----------- 114 K +L ++V+ + + + + ++ +I + S DL +D+ F+ I Sbjct: 245 KPAKLHDFQEAIVNNKCLADIGIAIGVSKYIFQESPDLFRDINQFVKIITCDYMIDDEMN 304 Query: 115 ---------------------QADVVESLIAALYLDGGIEVA 135 +DVVE+LI A+Y+D G +A Sbjct: 305 YNDRTEALFENFTEEVKIPKPMSDVVEALIGAIYIDTGESIA 346 >gi|17227776|ref|NP_484324.1| ribonuclease III [Nostoc sp. PCC 7120] gi|22654062|sp|Q8Z023|RNC_ANASP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|17135258|dbj|BAB77804.1| ribonuclease III [Nostoc sp. PCC 7120] Length = 228 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 8/201 (3%) Query: 17 FANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F + LL +ALTH S + E ERLEFLGD IL L L+ E EL+ Sbjct: 7 FRDDKLLRRALTHRSYVNENPEEGEHNERLEFLGDAILNFLSGEYLYRSHPDRGEDELTR 66 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG--G 131 R ++LV + ++ A E+ L +R+ +D ++ + E++I A YLD Sbjct: 67 RRSALVDEKQLAKFAIEVGLDFKMRLGKGAIRDGGYQNPNLLSSTFEAVIGAYYLDNNSN 126 Query: 132 IEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR-SGPDHDPR 188 IE ++ ++ + R D+K QEW G TP +T + G H P Sbjct: 127 IEAVRAIIEPLFESVPEQIVVVRSNVDSKNRFQEWVQRNIGPTPPKYLTEQIGGFSHAPE 186 Query: 189 FTVVVEISGLAPAQGMDCSKR 209 F V + +G+ +K+ Sbjct: 187 FKATVLVGEKEYGEGIGKNKK 207 >gi|89889945|ref|ZP_01201456.1| ribonuclease III (Rnase III), double-stranded RNA binding motif [Flavobacteria bacterium BBFL7] gi|89518218|gb|EAS20874.1| ribonuclease III (Rnase III), double-stranded RNA binding motif [Flavobacteria bacterium BBFL7] Length = 246 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 8/137 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 ++K G N + KA TH S+S + SYERLEFLGD ILG +I+ ++N Sbjct: 23 IKKITGITPKNIDIYRKAFTHKSMSLKDADGNPISYERLEFLGDAILGSVIAEYIYNEVP 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +VS E +++ + L F + R +F ++ ++ E+L+ Sbjct: 83 HGDEGYLTKMRSKIVSREHLNELGLDFGLIDFAKTQVPER----NFGANVHGNLFEALVG 138 Query: 125 ALYLDGGIEVAGTFVDK 141 A+YLD G + F+ + Sbjct: 139 AIYLDKGYKRTQNFISR 155 >gi|15828634|ref|NP_325994.1| ribonuclease III (RNase III) [Mycoplasma pulmonis UAB CTIP] gi|14089576|emb|CAC13336.1| RIBONUCLEASE III (RNASE III) [Mycoplasma pulmonis] Length = 241 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 107/209 (51%), Gaps = 13/209 (6%) Query: 20 RSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAK--EGELSVRFN 76 +++ +A TH++ + Y+ +SYE LEFLGD IL +S +F + +S K G ++ + Sbjct: 37 KNIFFQAFTHTTFHNLYKAKSYEMLEFLGDAILQKNVSEYIFKNTESNKINPGTATLIRS 96 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 LV+ S +A+EL L F+ + + V + + +D+ ESL AA+Y+ G +V Sbjct: 97 KLVNKTCLSNLAKELKLDKFLLLPKGQEELVKN--EKVLSDLFESLCAAIYITKGNDVLE 154 Query: 137 TFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD-HDPRFTVVV 193 F+ KY K + L+ K ++AK QE A +Y ++F ++ + Sbjct: 155 VFLQKYLYPKMQDLEY-KTLKNAKGRFQEIFQATTKSAGKYVISFDEEKKIYEAKLIHSE 213 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 I G+ G +K+ AEQ AA + LK+ Sbjct: 214 TIYGI----GYGKNKKEAEQNAAEDALKK 238 >gi|283769480|ref|ZP_06342376.1| ribonuclease III [Bulleidia extructa W1219] gi|283103748|gb|EFC05134.1| ribonuclease III [Bulleidia extructa W1219] Length = 226 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 8/188 (4%) Query: 22 LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 L+E+ALTHSS + H + ERLEF+GD +L L S ++ + EG+++ + LV Sbjct: 19 LIEQALTHSSYANEHGSKADNERLEFMGDAVLQLWSSAQIYPL--NLSEGQMTRLRSQLV 76 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI----EVA 135 + +R+L L +IR+ +I AD +E+ + AL+LD G+ + Sbjct: 77 CESALANYSRQLGLNQYIRLGKGEEHSGGREKDAIIADALEAFLGALFLDQGMLAVDLIL 136 Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + + +Q + D KT LQE A + Y++ GP + P F + + Sbjct: 137 RQVITPHLQQAKEIVQGVQLDYKTRLQEVVQADSRRSLVYQLVSEKGPSNAPTFMMNAVV 196 Query: 196 SGLAPAQG 203 GL G Sbjct: 197 DGLVLGTG 204 >gi|168039663|ref|XP_001772316.1| predicted protein [Physcomitrella patens subsp. patens] gi|162676303|gb|EDQ62787.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1275 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 117/248 (47%), Gaps = 34/248 (13%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +S + S LE + Y F N+ LL +ALTH+S + Y+RLEFLGD +L LI+ + Sbjct: 694 LSEAKVSELEILLNYKFQNKGLLVEALTHASCRRHSGDCYQRLEFLGDAVLDFLITKHFY 753 Query: 61 NHFDSAK--EGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFM------ 111 + + K G L+ ++ V+ E ++VA +L + + SSDL V ++ Sbjct: 754 ANSANLKRDPGLLTDLRSAAVNNECFARVAVRHNLHLYLLHNSSDLAARVDKYVHGSTTD 813 Query: 112 -----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKT 159 + +D+VESL A++LD G ++ + V K + + R + Sbjct: 814 AQCHGWNGDSGPKVLSDLVESLAGAVFLDSGYKLDTVWNVFKQLLKPLVTPATLRLEPIR 873 Query: 160 ELQEWAHA-KFGVTPEYKVTFRSGPDHDPRFTVVVE-----ISGLAPAQGMDCSKRAAEQ 213 EL E KFG P YK + D D TV VE I+G+ G +++A + Sbjct: 874 ELWELCQTEKFG-EPNYKKKREAMGDFD--MTVTVELKDETITGV----GRKPDEKSARK 926 Query: 214 VAAAEVLK 221 VAA + L+ Sbjct: 927 VAAIQALE 934 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 47/197 (23%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +L+ +A+T S S+ S E LE LGD L + +S LF + EGELS R +L+ Sbjct: 512 NLMLEAITTSKCQESF--SLEGLELLGDAFLEVSVSERLFLLHNRLDEGELSKRRTNLIC 569 Query: 81 AETCSQVARE-----------------------LDLAS--FIR----------VSSDLRK 105 + ++ RE ++L S +IR +R+ Sbjct: 570 NKMLERLGRERGIMVSKSCRDTTRSTYKQFEIMINLVSENYIRDTQFSPKEWATPGRVRE 629 Query: 106 DVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161 C + +Q ADV E+LI A Y+ GG+E A + + + S R +A+T + Sbjct: 630 TQCK-LPPLQGKTIADVFEALIGAHYIHGGVEAAQAMMGWLGCEVGV-SSSIREEARTRV 687 Query: 162 QEWAHAKFGVTPEYKVT 178 H + + E KV+ Sbjct: 688 ----HGQLELLSEAKVS 700 >gi|116618659|ref|YP_819030.1| dsRNA-specific ribonuclease [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271141|sp|Q03VW5|RNC_LEUMM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116097506|gb|ABJ62657.1| RNAse III [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 236 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 7/177 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 S + K+ +F + SLL +ALT + + + + Y+RLEFLGD ++ ++++ LF Sbjct: 8 SYILKKFNISFNDESLLTEALTQRNYLNEHPDEKGRDYQRLEFLGDSVMQMIVAEYLFKR 67 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+L+ ++V + + +R + L IR+ S+ D+ E+ Sbjct: 68 YPDWHEGQLTEMRIAMVQTRSFAHFSRMVHLNEGIRLGKGEEMSGARDRDSLLEDIWEAF 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 I ALYLD G +V F+++ A+ + F R D K+ LQE K V +Y+ Sbjct: 128 IGALYLDQGADVVRQFLNQTLFA-AIDTDFFDRFIDFKSRLQERLQTKGSVDIDYQT 183 >gi|255536416|ref|YP_003096787.1| Ribonuclease III [Flavobacteriaceae bacterium 3519-10] gi|255342612|gb|ACU08725.1| Ribonuclease III [Flavobacteriaceae bacterium 3519-10] Length = 254 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 35/224 (15%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 + K G + N +L +A + + S Q ++YERLEFLGD +LG +IS LF+ + A Sbjct: 29 ISKITGCSVQNINLYREAFSLKTASPRTQVKNYERLEFLGDSVLGAIISCHLFSTYPHAN 88 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ + +V+ + +++ EL L F++ S + + +++E+LI ALY Sbjct: 89 EGYLTQMKSKIVNRKNLNKLGDELGLTGFLQNESP-----STLSENTSGNLLEALIGALY 143 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRR------DAKTELQEWA-----HAKFGVTPEYK 176 LD E V +R L + + K+ L EW+ H ++ E + Sbjct: 144 LDVDYETCKKVV----LERLLTPSEINKLENKIVSYKSLLLEWSQKKKEHIRYDTEQEMQ 199 Query: 177 ----VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 V FRS V+ I+ A + SK+ AE+ AA Sbjct: 200 AGKNVVFRS----------VIWINDRKVANATETSKKKAEEKAA 233 >gi|78211701|ref|YP_380480.1| RNAse III [Synechococcus sp. CC9605] gi|78196160|gb|ABB33925.1| Ribonuclease III [Synechococcus sp. CC9605] Length = 241 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 7/204 (3%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 L+++A+TH +S + ERLEFLGD +L L + + H G S LVS Sbjct: 29 LVDQAMTH--VSSGRDRNLERLEFLGDAVLRLAATEFIDRHHADLTVGACSNLRAQLVSD 86 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVD 140 + V L + + + + D S + ++AD E+LI ALY G ++ ++ Sbjct: 87 RWLADVGEALGIEEHLLLGRHAQGDR-SARSRLRADATEALIGALYTALGNLKAIHRWLT 145 Query: 141 KYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISG 197 +W +A+ + + KT LQEW+ + P Y S DP RF V I G Sbjct: 146 PHWSATTQAVLATPHQFGGKTTLQEWSQGQGLGLPRYATEECSRQHGDPERFRCQVSIQG 205 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221 A+ S++ AEQ AA L+ Sbjct: 206 RNLAEAKGRSRKEAEQNAATAALQ 229 >gi|125555283|gb|EAZ00889.1| hypothetical protein OsI_22916 [Oryza sativa Indica Group] Length = 276 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 19/148 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58 M + +E +GY F +++L+E+ALTH S + Y+ +YERLE+LGD +L ++S Sbjct: 34 MGPGEVAAVESLLGYEFRDKALVEQALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSRE 93 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------ 111 +F + + G L+ + V E ++VA L F+R + +L + F+ Sbjct: 94 VFLTYGQLQPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMY 153 Query: 112 ----------TSIQADVVESLIAALYLD 129 + DVVESLI A+Y D Sbjct: 154 PIHSNGLLDPPKVLCDVVESLIGAIYCD 181 >gi|52548547|gb|AAU82396.1| ribonuclease III [uncultured archaeon GZfos17C7] Length = 248 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 75/125 (60%), Gaps = 8/125 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSA 66 LEK IG+ F N +LLE+A+T S S+ + +S Y+RLEFLGDR+L L+++ LF SA Sbjct: 3 LEKLIGHKFKNIALLEEAITTGSYSNEHPDSSDYQRLEFLGDRVLSLILAEELFKLSKSA 62 Query: 67 --KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+++ L + ++ + L ++IR +++ R+D+ + ADV E++ Sbjct: 63 SLDEGKMTFLKAELENNLRLAEYGENMGLRNYIR-ANEKREDI---RPKVIADVFEAICG 118 Query: 125 ALYLD 129 A+Y D Sbjct: 119 AVYQD 123 >gi|163754630|ref|ZP_02161752.1| putative ribonuclease III [Kordia algicida OT-1] gi|161325571|gb|EDP96898.1| putative ribonuclease III [Kordia algicida OT-1] Length = 244 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 8/138 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 ++ LE +G+ + + +KA TH S++ + +YERLEFLGD +L +IS LF Sbjct: 19 FAELEDILGFKTKRKKIYKKAFTHRSMNKKDAKGNSVNYERLEFLGDAMLSSVISAYLFT 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 S EG L+ + +VS E +++ R+L L V S + KD +F +I ++ E+ Sbjct: 79 EVPSGNEGYLTKMRSKIVSREHLNELGRDLKLIDL--VQSRIPKD--NFGENIHGNLFEA 134 Query: 122 LIAALYLDGGIEVAGTFV 139 LI A++LD G + F+ Sbjct: 135 LIGAIFLDKGYKYCERFI 152 >gi|282881269|ref|ZP_06289955.1| ribonuclease III [Prevotella timonensis CRIS 5C-B1] gi|281304859|gb|EFA96933.1| ribonuclease III [Prevotella timonensis CRIS 5C-B1] Length = 347 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 24/233 (10%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 YS+L IG+ + S + AL H S+ + + ERLEFLGD +L ++ +++ Sbjct: 20 YSSLYNIIGFYPHDISYYKLALMHKSVMRRNAKGRPVNNERLEFLGDAVLDAIVGHIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV T +++A E+ + S + + + E+ Sbjct: 80 HFPGKREGFLTNTRSKLVQRSTLNKLANEMGICK----LLLSSGRSSSHNSYVGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G + F+ L K + K++L EW+ K+ Sbjct: 136 LVGAIYLDRGYDACMRFMKNRILSEMLNIDKVAYKEVNFKSKLIEWSQKN-----RVKIH 190 Query: 179 F-----RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223 F + + +P F +VE+ G+ G SK+ ++Q+A+ E LKR+ Sbjct: 191 FNLLEQKKDENGNPIFKYLVELEGIEGCSGEGFSKKESQQLASKLTLEQLKRQ 243 >gi|195997771|ref|XP_002108754.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens] gi|190589530|gb|EDV29552.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens] Length = 1018 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 35/162 (21%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LEK IGY+F N+ + +ALTHSS H ES ++LEFLGD IL +I+ FN A Sbjct: 817 LEKVIGYSFQNKLFMIRALTHSSYHHHDIAIESNQKLEFLGDTILQYIIARHFFNSHPDA 876 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDV--------CSFMTSIQ-- 115 K +L ++V+ + + + + ++ ++ + S DL +D+ C +M + Sbjct: 877 KPAKLHDFQEAIVNNKCLAVIGIAIGVSKYVFQESPDLFRDIDQFAKIITCDYMIDDEMN 936 Query: 116 ----------------------ADVVESLIAALYLDGGIEVA 135 +DVVE+LI A+Y+D G +A Sbjct: 937 YNDRTEALFENFTEEVKIPKPVSDVVEALIGAIYIDTGESIA 978 >gi|308190056|ref|YP_003922987.1| ribonuclease III [Mycoplasma fermentans JER] gi|319777350|ref|YP_004137001.1| ribonuclease iii [Mycoplasma fermentans M64] gi|238809526|dbj|BAH69316.1| hypothetical protein [Mycoplasma fermentans PG18] gi|307624798|gb|ADN69103.1| ribonuclease III [Mycoplasma fermentans JER] gi|318038425|gb|ADV34624.1| Ribonuclease III [Mycoplasma fermentans M64] Length = 236 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 97/193 (50%), Gaps = 20/193 (10%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97 +Y+ LEFLGD IL L S +F F + G +++ + LV ++ ++++ ++ L F+ Sbjct: 52 NYQDLEFLGDAILQYLSSDFVFKKFPNLSAGNMTLIRSKLVCTKSLNEISTKIGLKDFLL 111 Query: 98 ----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 ++S D ++ V + AD+ E+ IAA+YLD ++V F++K +K G F Sbjct: 112 TAPGQMSKDAKRSV-----KVGADIFEAFIAAIYLDTNLKVVKEFLNKTVFD--IKIGDF 164 Query: 154 R----RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 +DAKT QE + + Y V+ +S + + +I G+ G SK Sbjct: 165 DIKHLKDAKTAFQEQIQSFSKLAVMYIVSEKSPTEFEAHAVHDNKIYGI----GFGKSKA 220 Query: 210 AAEQVAAAEVLKR 222 AE+ AA + L + Sbjct: 221 EAEENAALDALHK 233 >gi|193216954|ref|YP_002000196.1| ribonuclease III [Mycoplasma arthritidis 158L3-1] gi|193002277|gb|ACF07492.1| ribonuclease III [Mycoplasma arthritidis 158L3-1] Length = 222 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 7/201 (3%) Query: 25 KALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 K+LTH S S ++ +YE LEFLGD +L S +F +F EGE + +VS E Sbjct: 20 KSLTHKSFDQSDHFKFNYEYLEFLGDAVLEFYTSDRIFQNFPKYTEGEATRHRQMIVSNE 79 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTS-IQADVVESLIAALYLDGGIEVAGTFVDK 141 +++A ++ L R + +++ + S + +D+ ES I ALY GI ++D Sbjct: 80 NLAKIAHKIGLVEIARFGKKVFEEIKNIPNSKVFSDMFESFIGALYFGLGIGPTFQYLDS 139 Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 L +D K+ QE A ++ ++ + + ++ F + + Sbjct: 140 VLLDSVLNVID-SKDPKSYFQEIIQANGNLS---RLRYVTVAQNNGEFKSELLVDQKVFG 195 Query: 202 QGMDCSKRAAEQVAAAEVLKR 222 G SK+ AE+ AA LK+ Sbjct: 196 VGYGHSKKQAEKAAAISALKK 216 >gi|325859734|ref|ZP_08172864.1| ribonuclease III [Prevotella denticola CRIS 18C-A] gi|327312785|ref|YP_004328222.1| ribonuclease III [Prevotella denticola F0289] gi|325482660|gb|EGC85663.1| ribonuclease III [Prevotella denticola CRIS 18C-A] gi|326945209|gb|AEA21094.1| ribonuclease III [Prevotella denticola F0289] Length = 356 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 106/225 (47%), Gaps = 13/225 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + IG + + + AL H S++ + + ERLEFLGD IL ++ +++ Sbjct: 20 YLSLYQIIGIIPHDITYYKTALLHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + +V +T +++A+E+ + I + S + + + E+ Sbjct: 80 HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGINQLILSNG----HSSSHNSYLGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYK-V 177 L+ ALYLD G F+ + K + K++L EW+ K V E+K + Sbjct: 136 LVGALYLDHGYNACMKFMKTQILGELINIDKVAYKEVNFKSKLIEWSQ-KNKVKMEFKLI 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + P F V + GL +G SK+ ++Q A+ L+R Sbjct: 195 ENQKDKQGSPTFYFQVLMEGLPCGEGRGYSKKESQQEASKLTLQR 239 >gi|282855648|ref|ZP_06264959.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Pyramidobacter piscolens W5455] gi|282586496|gb|EFB91753.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Pyramidobacter piscolens W5455] Length = 253 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 95/223 (42%), Gaps = 13/223 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNH 62 R +L+KR GY F + LL A T S + S ERLEFLGD L LL+ L+ Sbjct: 13 RADSLQKRTGYQFRDPELLRLAFTQRSGAGGPNPSMNNERLEFLGDAALSLLVGEALYRE 72 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + A EG +++ + LV S E +RV D ++ D VE+ Sbjct: 73 YPEADEGFMTIERSKLVCGRNLSAWGYEAGFDQMLRVC-----DGVEVSDAMVEDSVEAA 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ-EWAHAKFGVTPEYKVTFRS 181 A +LDGG++ + + +G D++ L+ + ++ K G P Y T R Sbjct: 128 AGAFFLDGGLDAVRALLQSFSDYPDQGAGF---DSRRHLERDCSYEKLGA-PRYD-TMRR 182 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + F V + G+ + AE+ AA + + R G Sbjct: 183 RANGKIIFESSVSLDKEPSGTGIGADRTEAERNAARDAMCRLG 225 >gi|124486133|ref|YP_001030749.1| hypothetical protein Mlab_1315 [Methanocorpusculum labreanum Z] gi|124363674|gb|ABN07482.1| ribonuclease III [Methanocorpusculum labreanum Z] Length = 145 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 11/147 (7%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLL 59 + YS L +IGY FAN LL ALT ++ + S E+ + L LGD +L L++ L Sbjct: 1 MNYSDLYAKIGYTFANVDLLLHALTRTAYARENELSMSETMDSLAVLGDAVLDLIVIRRL 60 Query: 60 F--NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTSIQA 116 FD +GE++ + LV+ ++A ++ L ++R +LR + + + A Sbjct: 61 IEEGEFD---KGEITRKKIDLVNMTVVRKLAEDIGLPEYMRWGKGELRMQIWTS-GRVSA 116 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYW 143 + E+L+ A YLDGG+E + +D W Sbjct: 117 ECFEALMGAAYLDGGVEASSAILDHVW 143 >gi|115468004|ref|NP_001057601.1| Os06g0358800 [Oryza sativa Japonica Group] gi|75254269|sp|Q69KJ0|RTL3_ORYSJ RecName: Full=Ribonuclease 3-like protein 3; AltName: Full=Ribonuclease III-like protein 3; Short=RNase III-like protein 3 gi|51091751|dbj|BAD36550.1| CAF protein-like [Oryza sativa Japonica Group] gi|113595641|dbj|BAF19515.1| Os06g0358800 [Oryza sativa Japonica Group] gi|125597181|gb|EAZ36961.1| hypothetical protein OsJ_21299 [Oryza sativa Japonica Group] Length = 299 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 19/148 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58 M + +E +GY F +++L+E+ALTH S + Y+ +YERLE+LGD +L ++S Sbjct: 34 MGPGEVAAVESLLGYEFRDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSRE 93 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------ 111 +F + + G L+ + V E ++VA L F+R + +L + F+ Sbjct: 94 VFLTYGQLQPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMY 153 Query: 112 ----------TSIQADVVESLIAALYLD 129 + DVVESLI A+Y D Sbjct: 154 PIHSNGLLDPPKVLCDVVESLIGAIYCD 181 >gi|18402610|ref|NP_566661.1| RTL2 (RNASE THREE-LIKE PROTEIN 2); double-stranded RNA binding / ribonuclease III [Arabidopsis thaliana] gi|75274109|sp|Q9LTQ0|RTL2_ARATH RecName: Full=Ribonuclease 3-like protein 2; AltName: Full=Ribonuclease III-like protein 2; Short=RNase III-like protein 2; AltName: Full=Ribonuclease three-like protein 2 gi|9294562|dbj|BAB02825.1| unnamed protein product [Arabidopsis thaliana] gi|332642855|gb|AEE76376.1| RNAse THREE-like protein 2 [Arabidopsis thaliana] Length = 391 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 22/151 (14%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +EK + Y F+N+SLL++A+TH+S + SYERLEF+GD +GL IS L+ + S + Sbjct: 63 VEKILNYKFSNKSLLKEAITHTSCTDF--PSYERLEFIGDSAIGLAISNYLYLTYPSLEP 120 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSF----------------- 110 +LS+ + VS E ++V+ L SF+R ++ L + V F Sbjct: 121 HDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDDLSVSYGGL 180 Query: 111 --MTSIQADVVESLIAALYLDGGIEVAGTFV 139 + AD+ ESL A+Y+D ++ +V Sbjct: 181 VKAPKVLADLFESLAGAVYVDVNFDLQRLWV 211 >gi|307150902|ref|YP_003886286.1| ribonuclease III [Cyanothece sp. PCC 7822] gi|306981130|gb|ADN13011.1| ribonuclease III [Cyanothece sp. PCC 7822] Length = 235 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 9/176 (5%) Query: 8 TLEKRIGY---AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 TL +++G A N SLL+ AL H S S + +Y++LEF+GD ++ L + +L + Sbjct: 14 TLVQKLGLPDTAAVNWSLLDLALIHPSFSR--EVNYQQLEFVGDAVVRLAAAEVLLETYP 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A GE + + +VS T ++ A L ++ S D ++ + AD E+L+ Sbjct: 72 DALVGEFAALRSMMVSDRTLAEFADVYGLERYLLTSERSSTDEAGRVSRL-ADGFEALLG 130 Query: 125 ALYLDG-GIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ALYL +++ ++D+ + +A ++ R + K LQEW A + + PEY+V Sbjct: 131 ALYLSTHNMKLIRPWLDELLQNKAAEIRLDPARLNYKDALQEWTQAHYKLLPEYRV 186 >gi|325268333|ref|ZP_08134966.1| ribonuclease 3 [Prevotella multiformis DSM 16608] gi|324989475|gb|EGC21425.1| ribonuclease 3 [Prevotella multiformis DSM 16608] Length = 356 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 21/229 (9%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + IG + + + AL H S++ + + ERLEFLGD IL ++ +++ Sbjct: 20 YLSLYQIIGIIPHDITYYKTALLHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + +V +T +++A+E+ + I + S + + + E+ Sbjct: 80 HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGINQLILSNG----HSSSHNSYLGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL-------KSGKFRRDAKTELQEWAHAKFGVTPE 174 L+ ALYLD G F+ K R L K + K++L EW+ K V E Sbjct: 136 LVGALYLDHGYNACMQFM----KTRILGELINIDKVAYKEVNFKSKLIEWSQ-KNKVKME 190 Query: 175 YK-VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +K + + P F V + GL +G SK+ ++Q A+ L+R Sbjct: 191 FKLIENQKDKQGSPTFYFQVLMEGLPCGEGRGYSKKESQQEASKLTLQR 239 >gi|213389868|gb|ACJ45995.1| putative ribonuclease III [Palm lethal yellowing phytoplasma] Length = 207 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 94/197 (47%), Gaps = 13/197 (6%) Query: 19 NRSLLEKALTHSSISH--SYQES-YERLEFLGDRILGLLISTLLF--NHFDSAKEGELSV 73 N SL ALTHSS ++ +Q + ERLEFLGD ++ L++ L+ N +D EG ++ Sbjct: 16 NISLYINALTHSSYANESPFQNNDNERLEFLGDAVINFLMANYLYRKNKYD---EGSMTK 72 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + V ++ A E+DL +I + +K SI AD E+L A+YLD G E Sbjct: 73 KRAQAVCIDSLLIYANEIDLKEYILLGKGEQKRYIH-NYSIIADAFEALFGAIYLDLGYE 131 Query: 134 -VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 V TF Y L D KT+LQE A+ T YK+ +G H+ F Sbjct: 132 QVKKTFY--YVVLPCLNKIIKIIDYKTQLQEIVQAE-KQTIHYKIIEETGLAHEKEFIAE 188 Query: 193 VEISGLAPAQGMDCSKR 209 V ++ G +K+ Sbjct: 189 VYLNNKLLGSGTGKTKK 205 >gi|310831171|ref|YP_003969814.1| putative dsRNA-specific ribonuclease III [Cafeteria roenbergensis virus BV-PW1] gi|309386355|gb|ADO67215.1| putative dsRNA-specific ribonuclease III [Cafeteria roenbergensis virus BV-PW1] Length = 362 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 15/198 (7%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 +SYERLE+LGDR++ L++S LF+ + EG ++ + S+++R++ L+ + Sbjct: 99 KSYERLEYLGDRVIKLIVSMYLFHRYPKQDEGFMTKLQTVIEDKNNLSKMSRDMGLSKYF 158 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 +S + D+ E+ ALYL G + + + + K R+ Sbjct: 159 IISKQIENIRGREAEKFNEDIFEAFFGALYLSNGFNSCLELLLNLLESQIDYAEKLYRNK 218 Query: 158 --KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF-----------TVVVEISGL--APAQ 202 K +L + H++ PEY GP H F T++ E + L Sbjct: 219 NYKDQLLRYYHSQKWGYPEYYQIGEFGPSHKRNFIMGVKKDEHKETIITENNKLEIGLGY 278 Query: 203 GMDCSKRAAEQVAAAEVL 220 G+ KR AEQ A+ L Sbjct: 279 GVGNKKRDAEQSASKMAL 296 >gi|167046024|gb|ABZ10543.1| dicer-like protein C [Trichoplax adhaerens] Length = 358 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 35/162 (21%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LEK IGY+F N+ + +ALTHSS H ES ++LEFLGD IL +I+ FN A Sbjct: 191 LEKVIGYSFQNKLFMIRALTHSSYHHHDIAIESNQKLEFLGDTILQYIIARHFFNSHPDA 250 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDV--------CSFMTSIQ-- 115 K +L ++V+ + + + + ++ ++ + S DL +D+ C +M + Sbjct: 251 KPAKLHDFQEAIVNNKCLAVIGIAIGVSKYVFQESPDLFRDIDQFAKIITCDYMIDDEMN 310 Query: 116 ----------------------ADVVESLIAALYLDGGIEVA 135 +DVVE+LI A+Y+D G +A Sbjct: 311 YNDRTEALFENFTEEVKIPKPVSDVVEALIGAIYIDTGESIA 352 >gi|330717913|ref|ZP_08312513.1| ribonuclease III [Leuconostoc fallax KCTC 3537] Length = 236 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 8/220 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L + +F N +LL +ALT + + + + Y+RLEFLGD ++ ++ LF + Sbjct: 10 LNQTFAISFDNETLLLEALTQRNYLNEHPDETGRDYQRLEFLGDAVMQETVAEYLFRRYP 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ ++V + + AR++ L IR+ + S+ D+ E+ I Sbjct: 70 KWHEGQLTEMRIAMVQTRSFAHFARQVRLNEAIRLGKGEEMNGARDRDSLLEDIWEAFIG 129 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G + F+D A+ + F D K+ LQE A V +Y + Sbjct: 130 ALYLDQGADTVKRFLDATLFA-AVDTDFFDHFIDFKSRLQEKLQANGPVDIDYNTISETI 188 Query: 183 -PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 D+ F V + A+G S + AE+ AA + L Sbjct: 189 LADNSTCFEASVSLDDRELARGTGKSIKDAEKAAARKALN 228 >gi|157285013|gb|ABV31246.1| dicer-like 4 [Physcomitrella patens] Length = 1445 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 120/255 (47%), Gaps = 41/255 (16%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +S + S LE + Y F N+ LL +ALTH+S + Y+RL FLGD +L LI+ + Sbjct: 1169 LSEAKVSELEILLNYKFQNKGLLVEALTHASCRRHSGDCYQRLGFLGDAVLDFLITKHFY 1228 Query: 61 NHFDSAK--EGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDL-----------RKD 106 + + K G L+ ++ V+ E ++VA +L + + SSDL D Sbjct: 1229 ANSANLKRDPGLLTDLRSAAVNNECFARVAVRHNLHLYLLHNSSDLAARVDKYVHGSTTD 1288 Query: 107 VCSF-----------MTSIQ--ADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGK 152 VC+ +S+Q +D+VESL A++LD G ++ + V K + + Sbjct: 1289 VCALSEAFLLSKHLSCSSMQVLSDLVESLAGAVFLDSGYKLDTVWNVFKQLLKPLVTPAT 1348 Query: 153 FRRDAKTELQEWAHA-KFGVTPEYKVTFRSGPDHDPRFTVVVE-----ISGLAPAQGMDC 206 R + EL E KFG P YK + D D TV VE I+G+ G Sbjct: 1349 LRLEPIRELWELCQTEKFG-EPNYKKKREAMGDFD--MTVTVELKDETITGV----GRKP 1401 Query: 207 SKRAAEQVAAAEVLK 221 +++A +VAA + L+ Sbjct: 1402 DEKSARKVAAIQALE 1416 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 22/172 (12%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +L+ +A+T S S+ S E LE LGD L + +S LF + EGELS R +L+ Sbjct: 1012 NLMLEAITTSKCQESF--SLEGLELLGDAFLEVSVSERLFLLHNRLDEGELSKRRTNLIC 1069 Query: 81 AETCSQVARELDLASFIR----------VSSDLRKDVCSFMTSIQ----ADVVESLIAAL 126 + ++ RE + ++IR +R+ C + +Q ADV E+LI A Sbjct: 1070 NKMLERLGRERGIMNYIRDTQFSPKEWATPGRVRETQCK-LPPLQGKTIADVFEALIGAH 1128 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 Y+ GG+E A + + + S R +A+T + H + + E KV+ Sbjct: 1129 YIHGGVEAAQAMMGWLGCEVGV-SSSIREEARTRV----HGQLELLSEAKVS 1175 >gi|186681790|ref|YP_001864986.1| ribonuclease III [Nostoc punctiforme PCC 73102] gi|186464242|gb|ACC80043.1| ribonuclease III [Nostoc punctiforme PCC 73102] Length = 228 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 77/186 (41%), Gaps = 9/186 (4%) Query: 17 FANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F N LL ALTH S H E ERLEFLGD +L L L+ E EL+ Sbjct: 7 FHNEKLLRHALTHRSYVHENPGEGEHNERLEFLGDALLNFLSGEYLYKCHPEMGEDELTR 66 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG--G 131 R ++LV + ++ A E+ L +R+ D ++ + E+++ A YLD Sbjct: 67 RRSALVDEKQLAKFAEEVGLDFRMRLGKGAILDGGYQNPNLLSSTFEAVLGAYYLDNDSN 126 Query: 132 IEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFR-SGPDHDP 187 IE ++ + K R D+K QEW P T + GP H P Sbjct: 127 IEAVRAIIEPLFDSVDPKHIVVSRSNVDSKNRFQEWVQRNVTPNPPKYFTEQIGGPSHAP 186 Query: 188 RFTVVV 193 F V Sbjct: 187 EFIAKV 192 >gi|225453660|ref|XP_002268369.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1971 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 110/245 (44%), Gaps = 32/245 (13%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + ++ + TLE + F NR LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1627 LRSVNFDTLEGALNIKFNNRGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1686 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115 + G L+ + V+ E ++VA + L +R SS L K + F+ +Q Sbjct: 1687 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHIHLRHGSSALEKQIRDFVKEVQDELS 1746 Query: 116 ------------------ADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 D+VES+ A++LD G + A + V + + Sbjct: 1747 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMH 1806 Query: 157 AKTELQEWAHAKF-GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 ELQE + G+ EYK T RSG TV V I G+ + K+ A+++A Sbjct: 1807 PVRELQERCQQQAEGL--EYKAT-RSG----NLATVEVFIDGVQIGIAQNPQKKMAQKLA 1859 Query: 216 AAEVL 220 A L Sbjct: 1860 ARNAL 1864 Score = 39.7 bits (91), Expect = 0.31, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 3/90 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ I Y +LE ALT +S ++ YER E LGD L ++S LF + E Sbjct: 1414 LKDVINYPVPAAKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKHE 1470 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR 98 G+L+ +VS Q A L S+I+ Sbjct: 1471 GQLTRMRQQMVSNMVLYQSALCKGLQSYIQ 1500 >gi|332029751|gb|EGI69620.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior] Length = 1257 Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 34/158 (21%) Query: 8 TLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 TLE +IGY F NR+ L +A TH S ++ E Y+RLEFLGD IL LI+ ++ + + Sbjct: 1003 TLESKIGYKFKNRAFLLQAFTHPSYTANGITECYQRLEFLGDAILDFLITCYIYENDVNL 1062 Query: 67 KEGELSVRFNSLVSAET--CSQVARELDLA-------------SFIRVSSD--------- 102 G+L+ ++LV+ T C V L A F+R + Sbjct: 1063 SPGDLTDLRSALVNNITFACLSVRHGLHTALLAYAPKLHEIIDCFVRFQEERDYVVNDEL 1122 Query: 103 ----LRKDVCSF-----MTSIQADVVESLIAALYLDGG 131 + +D C+ + + D+ ESLI A+YLD G Sbjct: 1123 LYVLIEEDECNITEYVDVPKVLGDLFESLIGAIYLDSG 1160 >gi|300933883|ref|ZP_07149139.1| ribonuclease III [Corynebacterium resistens DSM 45100] Length = 264 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 13/167 (7%) Query: 26 ALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 ALTH S ++ + ERLEFLGD +LGL ++ L+ F + E E+S +V+ Sbjct: 41 ALTHRSFANENDNLPNNERLEFLGDAVLGLTVAEQLYRQFPNRTESEISKMRAGVVNMYA 100 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 + VAREL+L I + + SI +D VE+++ A+YL+ G A V + + Sbjct: 101 LADVARELNLGPNILLGRGEMRTGGDDKHSILSDTVEAILGAIYLEHGFATARETVLRIF 160 Query: 144 KQRALKSGK--FRRDAKT---------ELQEWAHAKFGVTPEYKVTF 179 R ++ D KT +L + +A G PE+ TF Sbjct: 161 SDRITEAPTVGLTMDWKTVLVEKLSDLKLGDAVYASHGEGPEHNQTF 207 >gi|157414210|ref|YP_001485076.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9215] gi|157388785|gb|ABV51490.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9215] Length = 249 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 7/204 (3%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +A HSS +YE+LEF GD +L L S + + GE S +VS E Sbjct: 42 FNQAFIHSSEDKII--NYEKLEFFGDAVLRLAASNFIEKKYPQMSVGERSELRAQIVSDE 99 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141 +++ ++D+ I D S +I + E+LI A+Y I+ ++D Sbjct: 100 WLTKLGEKIDIEKLIIKGPKALGDENS-KNTIIGEATEALIGAVYKCFNSIQEVNLWLDD 158 Query: 142 YWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGL 198 W++ + ++ +KT LQEW +K P YK+ S + DP RF+ + I GL Sbjct: 159 IWEKDSEIFLKAPYKFKSKTVLQEWCQSKGFDLPIYKIIEFSKKNGDPKRFSCDIHIEGL 218 Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222 + S + AE AA ++++ Sbjct: 219 KESSAFGKSHKQAETNAARVLIEK 242 >gi|300741697|ref|ZP_07071718.1| ribonuclease III [Rothia dentocariosa M567] gi|311113800|ref|YP_003985022.1| ribonuclease III [Rothia dentocariosa ATCC 17931] gi|300380882|gb|EFJ77444.1| ribonuclease III [Rothia dentocariosa M567] gi|310945294|gb|ADP41588.1| ribonuclease III [Rothia dentocariosa ATCC 17931] Length = 228 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 88/197 (44%), Gaps = 23/197 (11%) Query: 26 ALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +LTH S + + E ERLEFLGD +L L I+ ++ EGEL + +VSA Sbjct: 27 SLTHRSYAFENPGVEHNERLEFLGDSVLSLAIAEEVYRRHPELPEGELVKLHHVVVSAPA 86 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 + AR+L+L IR+ R + SI AD +E++ A Y+ G E A V + Sbjct: 87 LAIAARKLELGKHIRLGKGERLTGGADKDSILADTMEAIFGATYISLGREAARELVLRLI 146 Query: 144 -----KQRALKSGKFRRDAKTELQ------EWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 ++ L SG RD KT+LQ W + + E GPDH +T Sbjct: 147 APMLEDEQILNSG---RDWKTDLQTLVTSRSWGDVTYEIEAE-------GPDHARVYTAR 196 Query: 193 VEISGLAPAQGMDCSKR 209 ++ G SK+ Sbjct: 197 AIVAKQTAGTGSGPSKK 213 >gi|17511264|gb|AAK68755.2| Unknown protein [Arabidopsis thaliana] gi|20148705|gb|AAM10243.1| unknown protein [Arabidopsis thaliana] Length = 391 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 22/151 (14%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +EK + Y F+N+SLL++A+TH+S + SYERLEF+GD +GL IS L+ + S + Sbjct: 63 VEKILNYKFSNKSLLKEAVTHTSCTDF--PSYERLEFIGDSAIGLAISNYLYLTYPSLEP 120 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSF----------------- 110 +LS+ + VS E ++V+ L SF+R ++ L + V F Sbjct: 121 HDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDDLSVSYGGL 180 Query: 111 --MTSIQADVVESLIAALYLDGGIEVAGTFV 139 + AD+ ESL A+Y+D ++ +V Sbjct: 181 VKAPKVLADLFESLAGAVYVDVNFDLQRLWV 211 >gi|149921056|ref|ZP_01909515.1| ribonuclease III [Plesiocystis pacifica SIR-1] gi|149818060|gb|EDM77517.1| ribonuclease III [Plesiocystis pacifica SIR-1] Length = 244 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 17/197 (8%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+AFA LL ALT S ++ ++ S LEF GD +L L+ + L+ F E Sbjct: 16 LGHAFAQPQLLRVALTVGSWANENRDAGWPSNACLEFFGDAVLDLVAADALWRRFPRLGE 75 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ SLVS + ++ AR +DL +I + + AD +E+++ A +L Sbjct: 76 GALTRLRASLVSERSLAKAARSIDLGRWIYLGRGDEQRGARERDGTLADALEAVLGAAFL 135 Query: 129 D-----GGIEVAGTFV-DKYWKQR----ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 D G VA V ++ + +R A + G D K+ LQ+ A+ +TP Y Sbjct: 136 DAREAGGDPSVAAAQVFERLFGERVRSLAPEDGL---DPKSRLQQLVQAERRLTPVYVAI 192 Query: 179 FRSGPDHDPRFTVVVEI 195 P DP + VE+ Sbjct: 193 GEPPPADDPHWRARVEL 209 >gi|52550203|gb|AAU84052.1| ribonuclease III [uncultured archaeon GZfos36D8] Length = 262 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 18/197 (9%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE IG+ F N +LLE+A+T S S H +Y+ LEFLGDR+L L+++ LF SA Sbjct: 19 LEASIGHQFKNIALLEEAITTGSYSNEHPGSSNYQTLEFLGDRVLSLILAEELFKLSKSA 78 Query: 67 K--EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+++ L + ++ + L ++IR +++ R+D+ + ADV E++ Sbjct: 79 SLDEGKMTFLKAELENNLRLAEYGENIGLRNYIR-ANEKREDI---RPKVIADVFEAICG 134 Query: 125 ALYLDGGIEVAGTFVDKYWK--------QRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 A+YLD + V K+ ++ + SGK + + + K PE K Sbjct: 135 AIYLDTEESIRIKEVKKFLLKFEILERIKKEMSSGKGFLPIRNQFENKFREKHRCNPEIK 194 Query: 177 VTFRS--GPDHDPRFTV 191 +S G +H R+ + Sbjct: 195 FEQKSTLGEEHPTRWRI 211 >gi|293192364|ref|ZP_06609475.1| ribonuclease III [Actinomyces odontolyticus F0309] gi|292820279|gb|EFF79273.1| ribonuclease III [Actinomyces odontolyticus F0309] Length = 240 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 9/208 (4%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ AL H S ++ + ERLEFLGD +L ++I+ L+ + E +LS + V Sbjct: 30 LLQLALVHRSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRAATV 89 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + + AR + L F+ + SI +D E+LI A YL G+E A + Sbjct: 90 SQQPLAAAARRIGLGDFVFLGKGESMHGGRDKDSILSDTFEALIGATYLTSGLEEARRVI 149 Query: 140 DK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + + A G+ +D KT L E++ A+ Y+V GPDH FT +S Sbjct: 150 LERLSFLLVDAPSRGQ-HQDWKTILIEYSQAQGLGEVSYEVEGE-GPDHQRVFTARAFVS 207 Query: 197 GLAP--AQGMDCSKRAAEQVAAAEVLKR 222 G SK+ AE AA + + R Sbjct: 208 ERPDPIGSGQASSKKHAENAAAQDAMSR 235 >gi|242059623|ref|XP_002458957.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor] gi|241930932|gb|EES04077.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor] Length = 1651 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 23/149 (15%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE ++GY F + LL +ALTH S S Y+RLEFLGD +L +LI+ LF Sbjct: 1245 LEAKLGYTFQVKGLLIEALTHPSQQESGATYCYQRLEFLGDAVLDILITRHLFLSHKDTD 1304 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQ----------- 115 EGEL+ ++ V+ E +QVA + +L F++ SS +D + ++ S++ Sbjct: 1305 EGELTDLRSASVNNENFAQVAVKHNLHQFLQHSSGFLQDQITEYVNSLEGSSMDRTSLLS 1364 Query: 116 ----------ADVVESLIAALYLDGGIEV 134 D+VES+ A+ +D +++ Sbjct: 1365 SGPSRGPKVLGDIVESIAGAILIDSKLDL 1393 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 73/196 (37%), Gaps = 63/196 (32%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S ERLE LGD +L +S LF F + EG+LS R + T ++ E + +IR Sbjct: 1066 SMERLELLGDSVLKYAVSAHLFMTFLNKHEGQLSSRRQETICNATLYRLGTERRIQGYIR 1125 Query: 99 ------------------------------VSSDLRKD-----------------VCSFM 111 ++ D+ + +CS Sbjct: 1126 DAAFDPRRWLAPGQLSSRPCPCECPVKSEVITEDIHRIDDKSIIIGKACDKGHRWICSKT 1185 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ----------RALKSGKFRRD-AKTE 160 S D VE++I A Y++GG++ A F W Q AL S R K + Sbjct: 1186 IS---DCVEAIIGAYYVEGGLKAA--FAVLKWLQIETLEEEQIMEALSSASVRNYLPKVD 1240 Query: 161 LQEWAHAKFGVTPEYK 176 + E+ AK G T + K Sbjct: 1241 VVEFLEAKLGYTFQVK 1256 >gi|268611358|ref|ZP_06145085.1| dsRNA-spesific ribonuclease [Ruminococcus flavefaciens FD-1] Length = 512 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 105/250 (42%), Gaps = 44/250 (17%) Query: 13 IGYAFANRSLLEKALTHS--SISHSYQESYERLEFLGDRILGLLISTLLFNHF------- 63 IGY F N +LL +A T SI + +ES E LEF GD++L ++I+ +++ F Sbjct: 170 IGYHFNNDNLLRQAFTRRAFSIEYGLEESNEILEFFGDQVLSMIITREMYSSFIVYSNHS 229 Query: 64 ------DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 EGEL+ + ++ E S A EL L +I + S + D Sbjct: 230 VEAPFTSKFNEGELTKIRSKFINKEHLSARAAELGLDKYILYGTGEEPG-----DSARED 284 Query: 118 VVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHAKFGV 171 ++E+LI A+ D +V VDK AL G R A L +W FG Sbjct: 285 MMEALIGAVAADSNWNWKVIEDVVDKL---VALYFGNTERLLEESAYDRLNKWHQKHFGC 341 Query: 172 TPEYKVTFRSGPDHDP--------RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---- 219 PEY+V + P R++V G+ AQ +D + +A A Sbjct: 342 MPEYEVRRVCTDEDSPSSRYICTLRYSVPSNDKGIRNAQRIDGRPGFSRSMARAYCANMA 401 Query: 220 ---LKREGIW 226 +K+ G+W Sbjct: 402 LIFIKKHGLW 411 >gi|312384317|gb|EFR29067.1| hypothetical protein AND_02261 [Anopheles darlingi] Length = 1651 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 33/163 (20%) Query: 9 LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E+ +GY F NR+ L +A TH++ +++ +SYE+LEFLGD +L LI+ +F Sbjct: 1404 IERTVGYKFRNRTFLLQAFTHATYTTNTLTKSYEQLEFLGDAVLDFLITLYIFERNPHMS 1463 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ------------ 115 G+L+ ++LV+ T + V L +I S + D +Q Sbjct: 1464 PGQLTDLRSALVNNVTLACVLVRFRLHHYILSQSPMLTDKIDKFVEVQGQKRNRIGDWVR 1523 Query: 116 --------------------ADVVESLIAALYLDGGIEVAGTF 138 DV E+LI A+YLD G ++ T+ Sbjct: 1524 LLTEESETPLAEYVDVPKVLGDVFEALIGAIYLDSGCDLVTTW 1566 >gi|226510363|ref|NP_001140816.1| hypothetical protein LOC100272891 [Zea mays] gi|194701228|gb|ACF84698.1| unknown [Zea mays] Length = 376 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 30/160 (18%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ + Y F +R+LLE+ALTH S S SY+RLEF+GD LGL S L+ + Sbjct: 44 VERLLRYQFCDRALLEEALTHQSFSDGAL-SYQRLEFVGDAALGLAFSNFLYLTNPTLGP 102 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLRKDVCSF-- 110 G LS + +S E ++VA DL +R V +L D+ + Sbjct: 103 GALSTLRAANISTEKLARVAVRHDLYPLLRRKCPRLDLLVGQFIESVKQELMHDLATAPY 162 Query: 111 ------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + AD+VE++ AA+Y+D + ++K WK Sbjct: 163 GGSVVKAPKVLADIVEAIAAAVYVDCKFD-----LEKLWK 197 >gi|189502546|ref|YP_001958263.1| hypothetical protein Aasi_1206 [Candidatus Amoebophilus asiaticus 5a2] gi|189497987|gb|ACE06534.1| hypothetical protein Aasi_1206 [Candidatus Amoebophilus asiaticus 5a2] Length = 241 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 103/212 (48%), Gaps = 17/212 (8%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N SL AL HSS + + S ERLEFLGD +L L+++ LF + +EG L+ + + Sbjct: 37 NLSLYRLALQHSS-AKIEENSNERLEFLGDAVLSLVVAEYLFKKYPLQEEGFLTEIRSRI 95 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 V+ + ++A+ + + + + D R + + + +E+ I A+YLD G + F Sbjct: 96 VNRASLGELAKRIGMDELL--TYDTRSVNHHNIKFVYGNALEAFIGAVYLDQGYALCAQF 153 Query: 139 -VDKYWKQRALKSGKFRRDA--KTELQEWA-----HAKFGVTPEYKVTFRSGPDHDPRFT 190 VD+ K D K+++ WA H +F + E ++ G F Sbjct: 154 IVDRLLKIHVDLETIVLTDNNYKSKIIAWAQKNRKHIQFILITEKRI---KGV---REFV 207 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + + G +G+ +K+ AEQ+AA E LKR Sbjct: 208 VQLLLEGEVYGEGVGKTKKQAEQMAAQESLKR 239 >gi|254526942|ref|ZP_05138994.1| ribonuclease III [Prochlorococcus marinus str. MIT 9202] gi|221538366|gb|EEE40819.1| ribonuclease III [Prochlorococcus marinus str. MIT 9202] Length = 249 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 7/204 (3%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +A HSS +YE+LEF GD +L L S + + GE S +VS E Sbjct: 42 FNQAFIHSSEDKII--NYEKLEFFGDAVLRLAASNFIEKKYPHMSVGERSELRAQIVSDE 99 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141 +++ E+D+ I D S +I + E+LI A+Y I+ ++D Sbjct: 100 WLTKLGGEIDIEKLIIKGPKALGDENS-KNTIIGESTEALIGAVYKCFNSIQEVNLWLDD 158 Query: 142 YWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGL 198 W++ + ++ +KT LQEW +K P YK+ S + DP RF+ + I GL Sbjct: 159 IWEKDSEIFLKAPYKFKSKTVLQEWCQSKGFDLPVYKIIEFSKKNGDPKRFSCDIYIEGL 218 Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222 + S + AE AA ++++ Sbjct: 219 KESSAFGKSHKQAETNAARVLIEK 242 >gi|313157061|gb|EFR56491.1| ribonuclease III [Alistipes sp. HGB5] Length = 232 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 98/218 (44%), Gaps = 21/218 (9%) Query: 14 GYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 G+ N L + AL H S S ++ + ERLEFLGD ++ + S LF + EG Sbjct: 3 GFIPNNIELYKLALIHKSASLVLEDGRAINNERLEFLGDAVIEAVTSDYLFIEYPDRDEG 62 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 L+ + +VS ++ + +A + L V S+ V I D E++I A+YLD Sbjct: 63 FLTQLRSKIVSRQSLNVLAVNIGLDR--HVISNGSTSVTQ--KHIYGDAFEAMIGAVYLD 118 Query: 130 GGIEVAGTFVDK--YWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 G E + Y++ +L + D K+ L EW +K+ FR+G D + Sbjct: 119 QGYEFVNRLLINRIYFRHLSLDELTESETDFKSRLIEWCQKN-----RHKIAFRTGYDKE 173 Query: 187 -----PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 P F V + G+ G SK+ AEQ AA V Sbjct: 174 YSANHPVFYSTVLVDGMEVGHGSGDSKKEAEQHAAFSV 211 >gi|295132160|ref|YP_003582836.1| ribonuclease III [Zunongwangia profunda SM-A87] gi|294980175|gb|ADF50640.1| putative ribonuclease III [Zunongwangia profunda SM-A87] Length = 197 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 61/101 (60%), Gaps = 4/101 (3%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +YERLEFLGD +LG +I++ L+ EG L+ + +VS + +++ ++L+L F++ Sbjct: 10 NYERLEFLGDAMLGSVIASHLYQEVPEGDEGYLTKMRSKIVSRKHLNELGKDLNLIRFVK 69 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S++ D F +I ++ E+L+ A+YLD G + F+ Sbjct: 70 --SNIPND--QFGVNIHGNIFEALVGAIYLDRGYKYCNRFI 106 >gi|326330626|ref|ZP_08196930.1| ribonuclease III [Nocardioidaceae bacterium Broad-1] gi|325951467|gb|EGD43503.1| ribonuclease III [Nocardioidaceae bacterium Broad-1] Length = 183 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 50 ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 +LG++++ L+ EG+L+ ++V+A ++V + + L I++ Sbjct: 1 MLGVVVTETLYRTHPDLPEGKLAKLRAAVVNARALAEVGQAIGLGQHIKLGRGEEATGGR 60 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHA 167 SI +D VE++I A++L GGIEV+ V + + K+ D KT LQE A Sbjct: 61 EKASIVSDTVEAVIGAVHLSGGIEVSTVLVHRLFDPLIEKASDLGAGLDWKTSLQELAAE 120 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + PEY +T GPDH FT V + G+ SK+ Sbjct: 121 RALGVPEYVIT-DEGPDHMKTFTAKVRVGDQLYGNGVGRSKK 161 >gi|154509007|ref|ZP_02044649.1| hypothetical protein ACTODO_01524 [Actinomyces odontolyticus ATCC 17982] gi|153798641|gb|EDN81061.1| hypothetical protein ACTODO_01524 [Actinomyces odontolyticus ATCC 17982] Length = 240 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 95/208 (45%), Gaps = 9/208 (4%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ AL H S ++ + ERLEFLGD +L ++I+ L+ + E +LS + V Sbjct: 30 LLQLALVHRSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRAATV 89 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + + AR + L F+ + SI +D E+LI A YL G+E A + Sbjct: 90 SQQPLAAAARRIGLGDFVFLGKGESMHGGRDKDSILSDTFEALIGATYLTSGLEEARRVI 149 Query: 140 DK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + + A G+ +D KT L E++ A Y+V GPDH FT +S Sbjct: 150 LERLSFLLVDAPSRGQ-HQDWKTILIEYSQAHGLGEVSYEVEG-EGPDHQRVFTARAFVS 207 Query: 197 GLAP--AQGMDCSKRAAEQVAAAEVLKR 222 G SK+ AE AA + + R Sbjct: 208 ERPDPIGSGQASSKKHAENAAAQDAMSR 235 >gi|224141703|ref|XP_002324204.1| dicer-like protein [Populus trichocarpa] gi|222865638|gb|EEF02769.1| dicer-like protein [Populus trichocarpa] Length = 1492 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 14/145 (9%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +LE ++GY F + +L++A+TH+SI Y+RLEFLGD +L LLI+ L+ Sbjct: 1124 SLESKLGYTFGVKFVLQEAMTHASIQEQGVTYCYQRLEFLGDSVLDLLITWHLYQSHTDV 1183 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSFMTSIQ---------- 115 GEL+ ++ V+ + +QVA + +L + + S+ L+ + ++ S Sbjct: 1184 DPGELTDLRSASVNNDNFAQVAVKQNLYTHLLHCSTLLQSQITEYVNSFHESDQGTKAPK 1243 Query: 116 --ADVVESLIAALYLDGGIEVAGTF 138 D++ES+ AL +D + G + Sbjct: 1244 ALGDLIESIAGALLIDTKFNLDGVW 1268 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 SL+ +A+T S+ S ERLE LGD +L +S LF + + EG+LS + V Sbjct: 927 SLILEAITTLRCCESF--SMERLELLGDSVLKYAVSCHLFLKYPNKHEGQLSSWRSGAVC 984 Query: 81 AETCSQVARELDLASFI 97 T ++ + + +I Sbjct: 985 NSTLHKLGTDCKVQGYI 1001 >gi|227432061|ref|ZP_03914075.1| dsRNA-specific ribonuclease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352178|gb|EEJ42390.1| dsRNA-specific ribonuclease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 236 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 7/177 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 S + K+ +F + SLL +ALT + + + + Y+RLEFLGD ++ ++++ LF Sbjct: 8 SYILKKFNVSFNDESLLTEALTQRNYLNEHPDEKGRDYQRLEFLGDSVMQMIVAEYLFKR 67 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+L+ ++V + + +R + L IR+ S+ D+ E+ Sbjct: 68 YPDWHEGQLTEMRIAMVQTRSFAHFSRMVHLNEGIRLGKGEEMSGARDRDSLLEDIWEAF 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 I ALYLD G +V F+++ A+ + F D K+ LQE K V +Y+ Sbjct: 128 IGALYLDQGADVVRQFLNQTLFA-AIDTDFFDHFIDFKSRLQERLQTKGSVDIDYQT 183 >gi|123969345|ref|YP_001010203.1| putative ribonuclease III [Prochlorococcus marinus str. AS9601] gi|123199455|gb|ABM71096.1| putative ribonuclease III [Prochlorococcus marinus str. AS9601] Length = 249 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 9/205 (4%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +A HSS +YE+LEF GD +L L S + + GE S +VS E Sbjct: 42 FNQAFIHSSEDKII--NYEKLEFFGDAVLRLAASNFIEKKYPQMSVGERSELRAQIVSDE 99 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141 +++ ++D+ I D S +I + E+LI A+Y I+ ++D Sbjct: 100 WLTKLGEKIDIEKLIIKGPKAIGDENS-KNTIICEATEALIGAIYKCFSSIKEVNLWLDD 158 Query: 142 YWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISG 197 W++ + LKS ++ +KT LQEW +K P YK+ S + DP RF + I G Sbjct: 159 IWEEDSEIFLKS-PYKFKSKTVLQEWCQSKGFDLPVYKIIEVSKKNGDPERFYCNIFIEG 217 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKR 222 L + S + AE AA ++++ Sbjct: 218 LKESSAFGKSHKQAETNAARVLIEK 242 >gi|86143647|ref|ZP_01062023.1| putative ribonuclease III [Leeuwenhoekiella blandensis MED217] gi|85829690|gb|EAQ48152.1| putative ribonuclease III [Leeuwenhoekiella blandensis MED217] Length = 248 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 80/140 (57%), Gaps = 8/140 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + T++K IG+ N + E+A TH S++ ++ +YERLEFLGD +LG +I+ LF+ Sbjct: 19 FVTVKKIIGFKPINITHYEEAFTHRSMALQDKKGNAFNYERLEFLGDAMLGAVIAAYLFD 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG L+ + +VS E +++ R+L L V S + K+ +F +I ++ E+ Sbjct: 79 EVGKGDEGYLTKMRSKVVSREHLNELGRDLGLLG--LVKSAIPKE--NFGANIHGNLFEA 134 Query: 122 LIAALYLDGGIEVAGTFVDK 141 L+ A+Y D G A F++K Sbjct: 135 LVGAIYQDRGYRYARKFINK 154 >gi|332005448|gb|AED92831.1| dicer-like protein 4 [Arabidopsis thaliana] Length = 1688 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 19/146 (13%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 TLE ++ Y F ++ LL +A H S + Y+RLEFLGD +L L+++ F F K Sbjct: 1280 TLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLK 1339 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFMTS---------- 113 G+L+ + V+ E + VA L F+ S ++ +D +F+ S Sbjct: 1340 PGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEG 1399 Query: 114 -----IQADVVESLIAALYLDGGIEV 134 + D+VES + AL+LD G + Sbjct: 1400 PRCPKVLGDLVESCLGALFLDCGFNL 1425 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 42/143 (29%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97 S ERLE LGD L +S LF H DS EGEL+ R +++V+ ++A + +L +I Sbjct: 1103 SLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQVYIR 1162 Query: 98 ----------------RVSSD---------LRKDV-----------CS-----FMTSIQA 116 RV+ D L +D+ CS A Sbjct: 1163 DQALDPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTGEIRCSKGHHWLYKKTIA 1222 Query: 117 DVVESLIAALYLDGGIEVAGTFV 139 DVVE+L+ A +D G + A F+ Sbjct: 1223 DVVEALVGAFLVDSGFKGAVKFL 1245 >gi|145358264|ref|NP_197532.3| DCL4 (DICER-LIKE 4); RNA binding / protein binding / ribonuclease III [Arabidopsis thaliana] gi|322510021|sp|P84634|DCL4_ARATH RecName: Full=Dicer-like protein 4 gi|73672051|gb|AAZ80387.1| dicer-like 4 [Arabidopsis thaliana] gi|332005447|gb|AED92830.1| dicer-like protein 4 [Arabidopsis thaliana] Length = 1702 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 19/146 (13%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 TLE ++ Y F ++ LL +A H S + Y+RLEFLGD +L L+++ F F K Sbjct: 1294 TLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLK 1353 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFMTS---------- 113 G+L+ + V+ E + VA L F+ S ++ +D +F+ S Sbjct: 1354 PGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEG 1413 Query: 114 -----IQADVVESLIAALYLDGGIEV 134 + D+VES + AL+LD G + Sbjct: 1414 PRCPKVLGDLVESCLGALFLDCGFNL 1439 Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 42/143 (29%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97 S ERLE LGD L +S LF H DS EGEL+ R +++V+ ++A + +L +I Sbjct: 1117 SLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQVYIR 1176 Query: 98 ----------------RVSSD---------LRKDV-----------CS-----FMTSIQA 116 RV+ D L +D+ CS A Sbjct: 1177 DQALDPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTGEIRCSKGHHWLYKKTIA 1236 Query: 117 DVVESLIAALYLDGGIEVAGTFV 139 DVVE+L+ A +D G + A F+ Sbjct: 1237 DVVEALVGAFLVDSGFKGAVKFL 1259 >gi|328905041|gb|AEB54796.1| dicer 2 [Litopenaeus vannamei] Length = 1502 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 106/244 (43%), Gaps = 36/244 (14%) Query: 9 LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LEK+IGY F +RS + +A+THSS +++ + Y+RLEFLGD +L L++ +F F Sbjct: 1242 LEKKIGYTFRDRSFIVQAVTHSSYVNNQVTDCYQRLEFLGDAVLDYLVTCHIFCRFTDYS 1301 Query: 68 EGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ----------- 115 G+LS + V +T + A + L + ++ L + F++ + Sbjct: 1302 PGQLSDLRSYFVKNDTLGRAAAKGKLHQHLLHLNPKLEASIDKFLSILHQDPLGEELNTE 1361 Query: 116 ---------------ADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALKSGKFRRDAK 158 D+VE++I A+YLD ++VA + +R L Sbjct: 1362 DDVQDCEDVEIPKALGDMVEAIIGAVYLDSNRSLKVAWQVI-----ERILGDLLNTSIQT 1416 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 +L V E +V F G D + T VV++ G + R A++ AA Sbjct: 1417 IQLNPIRQLLEEVPGEKQVEFVKGEDDGSEKSTYVVKVKGFGTFTASGKNYRVAKKKVAA 1476 Query: 218 EVLK 221 LK Sbjct: 1477 IALK 1480 >gi|16331355|ref|NP_442083.1| ribonuclease III [Synechocystis sp. PCC 6803] gi|2500555|sp|Q55637|RNC2_SYNY3 RecName: Full=Ribonuclease 3 2; AltName: Full=Ribonuclease III 2; Short=RNase III 2 gi|1001526|dbj|BAA10153.1| ribonuclease III [Synechocystis sp. PCC 6803] Length = 244 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 14/164 (8%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +L++ ALTH+S S +++Y++LEF+GD ++ L + +L H+ GE+S LVS Sbjct: 29 NLVDLALTHAS--QSPEQNYQQLEFVGDAVVRLASAEVLMKHYPQTSVGEMSALRAILVS 86 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 T + L F+ ++ + D + S+ AD E+L+ ALYL V + Sbjct: 87 DRTLAGWGELYGLDRFLWITPAVLAD-KNGRVSLMADSFEALLGALYL----SVGDLSLI 141 Query: 141 KYWKQRAL--KSGKFRRDA-----KTELQEWAHAKFGVTPEYKV 177 + W L K+ + R+D K LQ W A + PEY+V Sbjct: 142 RPWLSEHLLAKATEIRQDPALHNYKEALQAWTQAHYKCLPEYRV 185 >gi|62320294|dbj|BAD94606.1| CAF protein [Arabidopsis thaliana] Length = 690 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 23/154 (14%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + ++ + LE+ + Y F + LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 335 LKSIDFVRLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 394 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115 + S G L+ + V+ E ++VA + L ++R SS L K + F+ +Q Sbjct: 395 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESS 454 Query: 116 ------------------ADVVESLIAALYLDGG 131 D+VES+ A++LD G Sbjct: 455 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG 488 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S L L+ I Y +LE ALT +S ++ YER E LGD L ++S LF Sbjct: 120 SMLLAVQLKNLISYPIPTSKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRFLFL 176 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + EG+L+ +VS Q A L S+I+ Sbjct: 177 KYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 213 >gi|52549755|gb|AAU83604.1| similar to ribonuclease III [uncultured archaeon GZfos32E4] Length = 264 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 18/197 (9%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE IG+ F N +LLE+A+T S S H +Y+ LEFLGDR+L L+++ LF SA Sbjct: 19 LEASIGHQFKNIALLEEAITTGSYSNEHPGSSNYQTLEFLGDRVLSLILAEELFKLSKSA 78 Query: 67 K--EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+++ L + ++ + L ++IR +++ R+D+ + ADV E++ Sbjct: 79 SLDEGKMTFLKAELENNLRLAEYGENIGLRNYIR-ANEKREDI---RPKVIADVFEAICG 134 Query: 125 ALYLDGGIEVAGTFVDKYWK--------QRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 A+YLD + V K ++ + SGK + + + K PE K Sbjct: 135 AIYLDTEESIRIKEVKKILLKFEILERIKKEMSSGKGFLPIRNQFENKFREKHRCNPEIK 194 Query: 177 VTFRS--GPDHDPRFTV 191 +S G +H R+ + Sbjct: 195 FEQKSTLGEEHPTRWRI 211 >gi|332189100|gb|AEE27221.1| endoribonuclease Dicer [Arabidopsis thaliana] Length = 1910 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 23/154 (14%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + ++ + LE+ + Y F + LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1555 LKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1614 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115 + S G L+ + V+ E ++VA + L ++R SS L K + F+ +Q Sbjct: 1615 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESS 1674 Query: 116 ------------------ADVVESLIAALYLDGG 131 D+VES+ A++LD G Sbjct: 1675 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG 1708 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S L L+ I Y +LE ALT +S ++ YER E LGD L ++S LF Sbjct: 1340 SMLLAVQLKNLISYPIPTSKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRFLFL 1396 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + EG+L+ +VS Q A L S+I+ Sbjct: 1397 KYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1433 >gi|15223286|ref|NP_171612.1| DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA binding / protein binding / ribonuclease III [Arabidopsis thaliana] gi|34922211|sp|Q9SP32|DCL1_ARATH RecName: Full=Endoribonuclease Dicer homolog 1; AltName: Full=Dicer-like protein 1; Short=AtDCL1; AltName: Full=Protein ABNORMAL SUSPENSOR 1; AltName: Full=Protein CARPEL FACTORY; AltName: Full=Protein SHORT INTEGUMENTS 1; AltName: Full=Protein SUSPENSOR 1 gi|11559645|gb|AAG38019.1|AF292940_1 short integuments 1 [Arabidopsis thaliana] gi|11559647|gb|AAG38020.1|AF292941_1 short integuments 1 [Arabidopsis thaliana] gi|332189099|gb|AEE27220.1| endoribonuclease Dicer [Arabidopsis thaliana] Length = 1909 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 23/154 (14%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + ++ + LE+ + Y F + LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1554 LKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1613 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115 + S G L+ + V+ E ++VA + L ++R SS L K + F+ +Q Sbjct: 1614 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESS 1673 Query: 116 ------------------ADVVESLIAALYLDGG 131 D+VES+ A++LD G Sbjct: 1674 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG 1707 Score = 41.6 bits (96), Expect = 0.076, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S L L+ I Y +LE ALT +S ++ YER E LGD L ++S LF Sbjct: 1339 SMLLAVQLKNLISYPIPTSKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRFLFL 1395 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + EG+L+ +VS Q A L S+I+ Sbjct: 1396 KYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1432 >gi|6102610|gb|AAF03534.1|AF187317_1 CAF protein [Arabidopsis thaliana] Length = 1909 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 23/154 (14%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + ++ + LE+ + Y F + LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1554 LKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1613 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115 + S G L+ + V+ E ++VA + L ++R SS L K + F+ +Q Sbjct: 1614 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESS 1673 Query: 116 ------------------ADVVESLIAALYLDGG 131 D+VES+ A++LD G Sbjct: 1674 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG 1707 Score = 41.6 bits (96), Expect = 0.076, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S L L+ I Y +LE ALT +S ++ YER E LGD L ++S LF Sbjct: 1339 SMLLAVQLKNLISYPIPTSKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRFLFL 1395 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + EG+L+ +VS Q A L S+I+ Sbjct: 1396 KYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1432 >gi|218508317|ref|ZP_03506195.1| ribonuclease III [Rhizobium etli Brasil 5] Length = 75 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 44/66 (66%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +SA + LE IG+ FA + L++ALTH+S +YERLEFLGDR+LGL I+ LLF Sbjct: 7 LSAADRAKLENLIGHDFAEKERLDRALTHASARTEKGSNYERLEFLGDRVLGLCIAELLF 66 Query: 61 NHFDSA 66 F +A Sbjct: 67 RTFGTA 72 >gi|125542181|gb|EAY88320.1| hypothetical protein OsI_09779 [Oryza sativa Indica Group] Length = 1883 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 23/158 (14%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ + TL+ +G F N+ LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1533 MRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1592 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115 + G L+ + V+ E ++VA + L +R SS L + F+ +Q Sbjct: 1593 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELL 1652 Query: 116 ------------------ADVVESLIAALYLDGGIEVA 135 D+VES+ A++LD G + + Sbjct: 1653 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTS 1690 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S L L+ I Y +LE ALT +S ++ YER E LGD L ++S LF Sbjct: 1317 SMLLAVQLKDIIDYPVPATKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRFLFL 1373 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + EG+L+ +VS Q A L S+I+ Sbjct: 1374 KYPQKHEGQLTRMRQQMVSNMVLYQYALNKTLQSYIQ 1410 >gi|126179439|ref|YP_001047404.1| ribonuclease III [Methanoculleus marisnigri JR1] gi|125862233|gb|ABN57422.1| RNAse III [Methanoculleus marisnigri JR1] Length = 154 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 7/142 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNH 62 LE+RI Y+F + LL++AL H S S+ + E + L LGD +L ++ LL Sbjct: 5 LEERINYSFKQKDLLQRALLHRSRSNEERQKQKICEDQDALRTLGDAVLKTILCDLLMRS 64 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 K GE++++ +++ +++ R DL I V R + ++ A+ +E++ Sbjct: 65 GYETK-GEITIKKSTIERRPFLAELGRRFDLQDKILVGEGARMQKHNEEPNVIAETLEAI 123 Query: 123 IAALYLDGGIEVAGTFVDKYWK 144 I A+YLDGG E A V +++ Sbjct: 124 IGAMYLDGGYESAKKAVSGWYE 145 >gi|125584735|gb|EAZ25399.1| hypothetical protein OsJ_09217 [Oryza sativa Japonica Group] Length = 1883 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 23/158 (14%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ + TL+ +G F N+ LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1533 MRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1592 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115 + G L+ + V+ E ++VA + L +R SS L + F+ +Q Sbjct: 1593 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELL 1652 Query: 116 ------------------ADVVESLIAALYLDGGIEVA 135 D+VES+ A++LD G + + Sbjct: 1653 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTS 1690 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 3/97 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S L L+ I Y +LE ALT +S + YER E LGD L ++S LF Sbjct: 1317 SMLLAVQLKDIIDYPVPATKILE-ALTAASCQETL--CYERAELLGDAYLKWVVSRFLFL 1373 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + EG+L+ +VS Q A L S+I+ Sbjct: 1374 KYPQKHEGQLTRMRQQMVSNMVLYQYALNKTLQSYIQ 1410 >gi|75330224|sp|Q8LMR2|DCL1_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 1; AltName: Full=Dicer-like protein 1; Short=OsDCL1 gi|21426125|gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group] gi|108705906|gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza sativa Japonica Group] Length = 1883 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 23/158 (14%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ + TL+ +G F N+ LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1533 MRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1592 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115 + G L+ + V+ E ++VA + L +R SS L + F+ +Q Sbjct: 1593 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELL 1652 Query: 116 ------------------ADVVESLIAALYLDGGIEVA 135 D+VES+ A++LD G + + Sbjct: 1653 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTS 1690 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 3/97 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S L L+ I Y +LE ALT +S + YER E LGD L ++S LF Sbjct: 1317 SMLLAVQLKDIIDYPVPATKILE-ALTAASCQETL--CYERAELLGDAYLKWVVSRFLFL 1373 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + EG+L+ +VS Q A L S+I+ Sbjct: 1374 KYPQKHEGQLTRMRQQMVSNMVLYQYALNKTLQSYIQ 1410 >gi|299754132|ref|XP_002911949.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130] gi|298410618|gb|EFI28455.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130] Length = 1457 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 36/220 (16%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + TL++R+GY F + S+L +A+TH S + + SY+RLEFLGD IL L++ L+ F Sbjct: 1121 FDTLQERLGYTFHSNSILVEAVTHPSFA-TDGPSYQRLEFLGDAILDLVVVHYLYEKFPE 1179 Query: 66 AKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSS-DLRKDVCSFMTSIQ-------- 115 A +LS+ ++ A T + +A +EL + + +++ L + + +++ + Sbjct: 1180 ANSHQLSLLRAKVICAPTLAYLAIKELGVHKILLINNMGLYRAIEAYVPVFEDITDEEIA 1239 Query: 116 ------------ADVVESLIAALYLDGGIEVAGT------FVDKYWKQRALKSGKFRRDA 157 +DV ESL+ A+ +D G T + K Q +L K D Sbjct: 1240 RSYYKFDPPKAISDVFESLVGAVLVDSGYNYDKTSAVVLDIMSKVLDQLSLDMAK---DP 1296 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + L EW A+ G +++F + VV+E+ G Sbjct: 1297 VSLLLEWV-AQHGCR---EISFSKNRKFNYDAGVVLEVHG 1332 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 19/115 (16%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S +RLE LGD +L L + LFN + + EG+L+ + VS + Q A E+ L +I Sbjct: 973 SNQRLETLGDAVLQLCTTVHLFNQYPNRHEGQLTTLRRATVSNKFLLQRALEMGLEEYIT 1032 Query: 99 V----------------SSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVA 135 V + + V + + S+Q D +E+L+ A +L GGI +A Sbjct: 1033 VEIASVARWRYILGEDADTAPPRSVRTLVPRRSLQ-DCMEALLGASFLQGGIPMA 1086 >gi|302815180|ref|XP_002989272.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii] gi|300143015|gb|EFJ09710.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii] Length = 524 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 28/167 (16%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLL 59 ++++ + LE +GY+F +R+LL +ALTHSS S YERLEF+GD +L L++ + Sbjct: 190 LNSIDFEGLENTLGYSFGSRNLLAQALTHSSSRQASMVPIYERLEFIGDAVLDHLLTRHI 249 Query: 60 FNHFDSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF-------- 110 + + G L+ +R +L S + + A + S+D + ++ Sbjct: 250 YFSYKDLHPGRLTDLRCAALNSESFARAMVKHKLHAHILHESNDFHSQIKTYAKHALNME 309 Query: 111 -------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + DV +SL+ ALY+D G+ +D+ WK Sbjct: 310 ENAIYSYGFGAVKAPKVLGDVFQSLVGALYIDSGLN-----LDQVWK 351 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 7/127 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L K I Y +LE ALT ++ Y YER+E LGD L +ST L+ F E Sbjct: 31 LRKAINYNIPASKILE-ALTAANCHEPY--CYERIELLGDAYLKWAVSTRLYLKFSDFPE 87 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDL----RKDVCSFMTSIQADVVESLIA 124 GEL++ ++S +A E L +++R++ + D+ + + A+VVE+LI Sbjct: 88 GELTITRGKIISNSALHYLALEKGLETYVRINPFVPGREPTDLQELSSKVLANVVEALIG 147 Query: 125 ALYLDGG 131 A Y+ G Sbjct: 148 AYYVHHG 154 >gi|297834980|ref|XP_002885372.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp. lyrata] gi|297331212|gb|EFH61631.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp. lyrata] Length = 391 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 22/151 (14%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK + Y F N+SLL++A+TH+S + SYERLEF+GD +GL IS L+ + S + Sbjct: 63 LEKILNYKFKNKSLLKEAITHTSCTDF--PSYERLEFVGDSAIGLAISNYLYLTYPSLEP 120 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSF----------------- 110 +LS+ + VS E ++V L F+R ++ L + V F Sbjct: 121 HQLSLLRAANVSTEKLARVTLNHGLYQFLRRNAPSLDEKVKEFSDAVGKEDDFSVAYGGL 180 Query: 111 --MTSIQADVVESLIAALYLDGGIEVAGTFV 139 + AD+ ES+ A+Y+D ++ +V Sbjct: 181 VKAPKVLADLFESVAGAVYVDVNFDLQRLWV 211 >gi|123967024|ref|YP_001012105.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9515] gi|123201390|gb|ABM72998.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9515] Length = 249 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 9/205 (4%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +ALTHSS +YE+LEF GD +L L S + + + G S + LVS E Sbjct: 42 FNEALTHSSADKIV--NYEKLEFFGDAVLRLSASDFIERKYKNMSVGNRSELRSQLVSDE 99 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141 +++ +++ + I D S +I A+ E+LI A+Y I ++D Sbjct: 100 WLTELGKKIFIEKVIVKGPKAIGDENS-KDTIIAETSEALIGAIYKCFNSIHEVNIWLDN 158 Query: 142 YWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISG 197 +W++ A LK+ + +AK+ LQEW P YK+ S DP RF+ + ++G Sbjct: 159 FWEKDAELYLKAPH-KYNAKSALQEWCQKHGFDLPIYKIYEVSSSHGDPKRFSCDIYLNG 217 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKR 222 A S + AE+ AA ++++ Sbjct: 218 SKEASSFGNSHKKAEKNAATILIEK 242 >gi|224068194|ref|XP_002302679.1| dicer-like protein [Populus trichocarpa] gi|222844405|gb|EEE81952.1| dicer-like protein [Populus trichocarpa] Length = 1817 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 111/245 (45%), Gaps = 32/245 (13%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + ++ + TLE + F +R LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1518 LRSVDFDTLEGALDIKFNDRGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1577 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115 + + G L+ + V+ E ++VA + L +R SS L K + F+ +Q Sbjct: 1578 FTYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALEKQIRDFVREVQDELL 1637 Query: 116 ------------------ADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 D+VES+ A++LD G + A + V + + Sbjct: 1638 KPVFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMH 1697 Query: 157 AKTELQEWAHAKF-GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 ELQE + G+ EYK T RSG TV V I G+ + K+ A+++A Sbjct: 1698 PVRELQERCQQQAEGL--EYKAT-RSG----NLATVEVFIDGVQVGVAQNPQKKMAQKLA 1750 Query: 216 AAEVL 220 A L Sbjct: 1751 ARNAL 1755 Score = 41.2 bits (95), Expect = 0.100, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 3/90 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ I Y +LE ALT +S ++ YER E LGD L ++S LF + E Sbjct: 1306 LKDIINYPVPASKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKHE 1362 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR 98 G+L+ +VS Q A L S+I+ Sbjct: 1363 GQLTRMRQQMVSNMVLYQYALNKGLQSYIQ 1392 >gi|242090101|ref|XP_002440883.1| hypothetical protein SORBIDRAFT_09g013160 [Sorghum bicolor] gi|241946168|gb|EES19313.1| hypothetical protein SORBIDRAFT_09g013160 [Sorghum bicolor] Length = 377 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 30/160 (18%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ + Y F +R+LLE+ALTH S S SY+RLEF+GD LGL S L+ + Sbjct: 45 VERLLRYQFCDRALLEEALTHQSFSDG-AFSYQRLEFVGDAALGLAFSNFLYLTNPTLGP 103 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ------------ 115 G LS + +S E ++VA DL + R + L V F+ S++ Sbjct: 104 GALSTLRAANISTEKLARVAVRHDLYPLLRRKCARLDLLVGQFIESVKQEVMHDLATAPY 163 Query: 116 -----------ADVVESLIAALYLDGGIEVAGTFVDKYWK 144 AD+VE++ AA+Y+D + ++K WK Sbjct: 164 GGSVVKAPKVLADIVEAIAAAVYVDCKFD-----LEKLWK 198 >gi|325954697|ref|YP_004238357.1| ribonuclease 3 [Weeksella virosa DSM 16922] gi|323437315|gb|ADX67779.1| Ribonuclease 3 [Weeksella virosa DSM 16922] Length = 256 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 8/123 (6%) Query: 24 EKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 E+A TH S + ++ERLEFLGD +LG + L+N +EG L+ + +V Sbjct: 42 EEAFTHRSAQRKDDKGQNVNFERLEFLGDALLGASAAVHLYNSAPDRQEGYLTKMRSKIV 101 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S ++V+R+L L F+ +++L + + D++E+ + A+Y+D G+ + F+ Sbjct: 102 SRRQLNEVSRKLHLTEFLIPANNL----ANLGEDVNGDLLEAFVGAIYVDQGLLITEKFI 157 Query: 140 DKY 142 +Y Sbjct: 158 TRY 160 >gi|302755618|ref|XP_002961233.1| hypothetical protein SELMODRAFT_74321 [Selaginella moellendorffii] gi|300172172|gb|EFJ38772.1| hypothetical protein SELMODRAFT_74321 [Selaginella moellendorffii] Length = 1291 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 22/147 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +LEK + Y F N++LL +A+TH+S + Y+RLEF+GD +L L++ LF Sbjct: 1046 SLEKELCYTFQNKALLLEAITHASTPDTVF-CYQRLEFIGDAVLDFLVTRHLFTSHPGLS 1104 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQ----------- 115 G LS ++ V+ + ++VA + L S++R S++LR + SF+ + Sbjct: 1105 PGLLSDLRSASVNNDCLARVAVKHRLHSYLRHGSAELRAKITSFLDVLDRDPECSVMFGF 1164 Query: 116 ---------ADVVESLIAALYLDGGIE 133 AD+VES+ A+ +D G + Sbjct: 1165 KALSGPKALADIVESVAGAILVDSGFD 1191 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 SYE LE LGD +L ++ L+ + EGELS R + + T ++A DL ++R Sbjct: 865 SYEGLELLGDSVLKYAVTRKLYLLHSTMHEGELSDRRSHAICNSTLRKLAVAQDLPMYVR 924 >gi|320093928|ref|ZP_08025763.1| ribonuclease III [Actinomyces sp. oral taxon 178 str. F0338] gi|319979140|gb|EFW10648.1| ribonuclease III [Actinomyces sp. oral taxon 178 str. F0338] Length = 239 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 96/207 (46%), Gaps = 9/207 (4%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 +LL AL H S ++ + ERLEFLGD +L ++I+ LF+ + E +LS + Sbjct: 29 ALLSLALVHRSYANEAGGIANNERLEFLGDSVLSVVIAERLFHDYPDVAESDLSRMRAAT 88 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 VS + AR + L ++ + SI +D E+LI A YL G++ A Sbjct: 89 VSQAPLAAAARRIGLGDYVYLGKGESLHGGRDKDSILSDTFEALIGATYLTHGLQAARRV 148 Query: 139 VDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 V + + + A + G +D KT L E++ Y+V GPDH FT I Sbjct: 149 VLERLSFLLEDAQERG-HHQDWKTLLVEYSQEHGLGEVSYEVEG-EGPDHRRVFTARAFI 206 Query: 196 SGL-AP-AQGMDCSKRAAEQVAAAEVL 220 +G+ P G SK+ AE AA + Sbjct: 207 AGIDGPVGSGRATSKKHAENAAAQNAM 233 >gi|255565079|ref|XP_002523532.1| Ribonuclease III, putative [Ricinus communis] gi|223537239|gb|EEF38871.1| Ribonuclease III, putative [Ricinus communis] Length = 1633 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/246 (23%), Positives = 114/246 (46%), Gaps = 39/246 (15%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ S+LE + + F NR L+ +A H S + Y+RLEFLGD +L LI++ LF+ Sbjct: 1204 SIDVSSLEDSLDHQFVNRGLVLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLFSV 1263 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQ------ 115 + K G L+ ++LV+ + VA + F+ S +L + + +++ ++ Sbjct: 1264 YPKLKPGLLTDLRSALVNNRAFAIVAVDRSFNEFLICDSGNLSEAIETYVNFVKRPAVEK 1323 Query: 116 ------------ADVVESLIAALYLDGGIEVAG------TFVDKYWKQRALKSGKFRRDA 157 D+VES I A++LD G ++ +F+D + FR Sbjct: 1324 DSLEGPKCPKVLGDLVESCIGAIFLDTGFDLNCIWKLMLSFLDPILNSSNVLLNPFR--- 1380 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG---LAPAQGMDCSKRAAEQV 214 EL E+ + ++K+ F + D F V +++G A + +K+ A ++ Sbjct: 1381 --ELHEFCESH-----KWKLQFPTL-KRDMNFLVEAKVTGKDICLDASANNSNKKEAIRI 1432 Query: 215 AAAEVL 220 A+ +++ Sbjct: 1433 ASEQII 1438 >gi|307105017|gb|EFN53268.1| hypothetical protein CHLNCDRAFT_53967 [Chlorella variabilis] Length = 947 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 107/261 (40%), Gaps = 53/261 (20%) Query: 9 LEKRIGYAFANRSLLEKALTHSS-----ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 +E G + L ALTH S + +SYERLEFLGD +LGL TLL Sbjct: 685 VEALTGCGVRDMGLYRTALTHKSALPLELRLEKLQSYERLEFLGDSVLGLCCRTLLMARC 744 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------ 99 + EG++S R + LVS + ++ A L L ++ + Sbjct: 745 PDSDEGQMSRRNSLLVSGASNARYAAFLGLDRYVLLEPRALRHAPLEASSEQPWHSSAAG 804 Query: 100 SSDLRKDVCSF--------MTSIQADVVESLIAALYLDGGIEVAGTFVDKY------WKQ 145 S+ + C F + AD E+L+ ALYLD G VA F + W+Q Sbjct: 805 STRRSRRRCHFSAGEGAQHKPGLLADAFEALLGALYLDRGFVVARRFCMRVLEACVEWEQ 864 Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAP 200 L++ + D K L +A A P + V S ++ P +TV V G Sbjct: 865 --LEAAQ---DFKALLCRYAGAHQKPQPRFSVRSTSQREYKAGLQLPWWTVEVAFGGRVV 919 Query: 201 AQGMDCSKRAAEQVAAAEVLK 221 G KR AEQ AA E L+ Sbjct: 920 GSGGSFDKRGAEQAAAREALE 940 >gi|6102924|emb|CAB59269.1| hypothetical protein [Homo sapiens] Length = 525 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 269 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 328 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 329 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 388 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 389 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 448 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 449 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 501 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 502 IAKSAAAKRALR 513 >gi|326920976|ref|XP_003206741.1| PREDICTED: endoribonuclease Dicer-like [Meleagris gallopavo] Length = 1921 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 103/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y+F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1665 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110 G L+ ++LV+ + +A + D + + VS +L + F Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1784 Query: 111 ------------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1897 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1898 IAKSAAARRALR 1909 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1293 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1350 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVS 1373 >gi|302772092|ref|XP_002969464.1| hypothetical protein SELMODRAFT_91347 [Selaginella moellendorffii] gi|300162940|gb|EFJ29552.1| hypothetical protein SELMODRAFT_91347 [Selaginella moellendorffii] Length = 1255 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 22/153 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +LEK + Y F N++LL +A+TH+S + Y+RLEF+GD +L L++ LF Sbjct: 1010 SLEKELCYTFQNKALLLEAITHASTPDTVF-CYQRLEFIGDAVLDFLVTRHLFTSHPGLS 1068 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQ----------- 115 G LS ++ V+ + ++VA + L S++R S++LR + SF+ + Sbjct: 1069 PGLLSDLRSASVNNDCLARVAVKHRLHSYLRHGSAELRAKINSFLDVLDRDPECSVMFGF 1128 Query: 116 ---------ADVVESLIAALYLDGGIEVAGTFV 139 AD+VES+ A+ +D G + +V Sbjct: 1129 KALSGPKALADIVESVAGAILVDSGFDFEKLWV 1161 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 SYE LE LGD +L ++ L+ + EGELS R + + T ++A DL ++R Sbjct: 829 SYEGLELLGDSVLKYAVTRKLYLLHSTMHEGELSDRRSHAICNSTLRKLAVAQDLPMYVR 888 >gi|158300291|ref|XP_320248.4| AGAP012289-PA [Anopheles gambiae str. PEST] gi|157013088|gb|EAA00264.4| AGAP012289-PA [Anopheles gambiae str. PEST] Length = 1672 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 33/163 (20%) Query: 9 LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E +GY F NR+ L +A TH+S S+S SY++LEFLGD +L L+S ++ S Sbjct: 1426 IEATLGYRFRNRTYLLQAFTHTSYTSNSLTGSYQQLEFLGDAVLDFLVSMYIYERNPSMS 1485 Query: 68 EGELSVRFNSLVSAET--CSQVARELD-------------LASFIRVSSDLRKDVCSF-- 110 G+L+ ++LV+ C V EL + F+ V R ++ Sbjct: 1486 PGQLTDLRSALVNNVNLACVLVRNELHRHILSQSPMLTDAIGKFVAVHRCHRNQGSNWVR 1545 Query: 111 ---------------MTSIQADVVESLIAALYLDGGIEVAGTF 138 + + DV+E+LI A+YLD G ++A T+ Sbjct: 1546 LLTEESDTPMAEYVDVPKVLGDVLEALIGAIYLDSGNDLAATW 1588 >gi|326533632|dbj|BAK05347.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 381 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 28/148 (18%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+ + Y F +RSLL++ALTH S S SY+RLEF+GD LGL S L+ + Sbjct: 46 VERLLQYRFRDRSLLDEALTHQSFSGGAGGAASYQRLEFVGDAALGLAFSNFLYLTNPTV 105 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD--VCSFMTSIQ--------- 115 G LS + +S E ++VA DL +R + R D V F+ S++ Sbjct: 106 GPGALSTLRAANISTEKLARVAVRHDLYPLLRRNCP-RLDLLVGQFIESVKQELEDDLGI 164 Query: 116 --------------ADVVESLIAALYLD 129 AD+VE++ AA+Y+D Sbjct: 165 TPYGGSVFKAPKVLADIVEAIAAAVYVD 192 >gi|326497771|dbj|BAK05975.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 379 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 28/148 (18%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+ + Y F +RSLL++ALTH S S SY+RLEF+GD LGL S L+ + Sbjct: 44 VERLLQYRFRDRSLLDEALTHQSFSGGAGGAASYQRLEFVGDAALGLAFSNFLYLTNPTV 103 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD--VCSFMTSIQ--------- 115 G LS + +S E ++VA DL +R + R D V F+ S++ Sbjct: 104 GPGALSTLRAANISTEKLARVAVRHDLYPLLRRNCP-RLDLLVGQFIESVKQELEDDLGI 162 Query: 116 --------------ADVVESLIAALYLD 129 AD+VE++ AA+Y+D Sbjct: 163 TPYGGSVFKAPKVLADIVEAIAAAVYVD 190 >gi|255548081|ref|XP_002515097.1| dicer-1, putative [Ricinus communis] gi|223545577|gb|EEF47081.1| dicer-1, putative [Ricinus communis] Length = 1543 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 32/245 (13%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + ++ + LE + F +R LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1199 LRSIDFDALEGALNIKFQDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1258 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115 + + G L+ + V+ E ++VA L +R SS L K + F+ +Q Sbjct: 1259 FTYTNLPPGRLTDLRAAAVNNENFARVAVNHKLHVHLRHGSSALEKQIRDFVREVQDELS 1318 Query: 116 ------------------ADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 D+VES+ A++LD G + A + V + + Sbjct: 1319 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMH 1378 Query: 157 AKTELQEWAHAKF-GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 ELQE + G+ EYK T RSG TV V I G+ + K+ A+++A Sbjct: 1379 PVRELQERCQQQAEGL--EYKAT-RSG----NLATVEVFIDGVQVGVAQNPQKKMAQKLA 1431 Query: 216 AAEVL 220 A L Sbjct: 1432 ARNAL 1436 Score = 38.9 bits (89), Expect = 0.50, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ I Y+ +LE ALT +S ++ YER E LGD L ++S LF + E Sbjct: 986 LKDIIHYSVPALKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKHE 1042 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR 98 G+L+ +VS Q A L S+I+ Sbjct: 1043 GQLTRMRQQMVSNMVLYQYALIKGLQSYIQ 1072 >gi|168177333|pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 15 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLITKHLYEDPR 74 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 75 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 134 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y + L Sbjct: 135 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 194 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 195 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 247 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 248 IAKSAAARRALR 259 >gi|156368540|ref|XP_001627751.1| predicted protein [Nematostella vectensis] gi|156214670|gb|EDO35651.1| predicted protein [Nematostella vectensis] Length = 199 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 30/160 (18%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 EKRIGY F+N+ L +ALTH+S S + + Y+RLEFLGD +L L++ L+++ + Sbjct: 4 FEKRIGYEFSNKLYLIQALTHASYSQNRLTDCYQRLEFLGDALLDFLVTELIYSRNTNLD 63 Query: 68 EGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ----------- 115 GEL+ +LV+ +++A + S ++S + + F+ ++ Sbjct: 64 PGELTDLRQALVNNNIFAEIAVKHGFNKSLFQMSPEWFNKIGVFVDHVKEREARGIQDPF 123 Query: 116 -----------------ADVVESLIAALYLDGGIEVAGTF 138 D+ ES+ A++LD G+++ T+ Sbjct: 124 LTLSNDDEEGIEAPKVLGDIFESVAGAIFLDSGMDLVLTW 163 >gi|254281274|ref|NP_001156875.1| endoribonuclease Dicer [Taeniopygia guttata] Length = 1921 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 103/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y+F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1665 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110 G L+ ++LV+ + +A + D + + VS +L + F Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1784 Query: 111 ------------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1897 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1898 IAKSAAARRALR 1909 Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1293 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1350 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVS 1373 >gi|94957752|ref|NP_001035555.1| endoribonuclease Dicer [Gallus gallus] gi|257051054|sp|Q25BN1|DICER_CHICK RecName: Full=Endoribonuclease Dicer gi|90074858|dbj|BAE87103.1| Dicer protein [Gallus gallus] Length = 1921 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 103/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y+F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1665 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110 G L+ ++LV+ + +A + D + + VS +L + F Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1784 Query: 111 ------------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1897 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1898 IAKSAAARRALR 1909 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1293 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1350 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVS 1373 >gi|218439615|ref|YP_002377944.1| ribonuclease III [Cyanothece sp. PCC 7424] gi|218172343|gb|ACK71076.1| Ribonuclease III [Cyanothece sp. PCC 7424] Length = 235 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 85/160 (53%), Gaps = 6/160 (3%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 SLL+ AL H S S +Y++LEF+GD ++ L + +L + A GE + + +VS Sbjct: 30 SLLDLALIHPSFSKEV--NYQQLEFVGDAVVRLAAAEVLLETYPEAPVGEFAALRSIMVS 87 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFV 139 T ++ A L ++ ++ + D ++ + AD E+++ ALYL +++ ++ Sbjct: 88 DRTLAEFADVFGLERYLLTAAYVSGDEAGRISRL-ADAFEAVLGALYLSTHTMQLVRPWL 146 Query: 140 DKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 D+ +++A + R + K LQEW A + + P+Y+V Sbjct: 147 DELLEKKAAEILQDPARLNYKDALQEWTQAHYKLLPQYRV 186 >gi|327259080|ref|XP_003214366.1| PREDICTED: endoribonuclease Dicer-like isoform 2 [Anolis carolinensis] Length = 1915 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 103/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y+F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1659 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1718 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110 G L+ ++LV+ + +A + D + + VS +L + F Sbjct: 1719 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1778 Query: 111 ------------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1779 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWHVYYPMMRPLIEKF 1838 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1839 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1891 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1892 IAKSAAARRALR 1903 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1287 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1344 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1345 KVSNCNLYRLGKKKGLPSRMVVS 1367 >gi|262278196|ref|ZP_06055981.1| ribonuclease III [Acinetobacter calcoaceticus RUH2202] gi|262258547|gb|EEY77280.1| ribonuclease III [Acinetobacter calcoaceticus RUH2202] Length = 155 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 3/148 (2%) Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG-IEVA 135 +LV E ++A +L L+ + +S+ K SI AD VE++I A+Y+D G + + Sbjct: 4 TLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYIDSGDLNLL 63 Query: 136 GTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 V K++ ++ +D K+ LQE+ A+ P Y+V G F V Sbjct: 64 TDIVLKWYVPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVEC 123 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLK 221 I GL+ G S+R AEQ AAAE+LK Sbjct: 124 LIDGLSKIYGEGSSRRFAEQAAAAEILK 151 >gi|193786026|dbj|BAG51002.1| unnamed protein product [Homo sapiens] Length = 554 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 298 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 357 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 358 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 417 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 418 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 477 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 478 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 530 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 531 IAKSAAARRALR 542 >gi|109084784|ref|XP_001100868.1| PREDICTED: endoribonuclease Dicer [Macaca mulatta] Length = 1920 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1664 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1723 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1724 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1783 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 1784 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1843 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1844 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1896 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1897 IAKSAAARRALR 1908 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1281 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1338 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1339 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1370 >gi|114654611|ref|XP_001154010.1| PREDICTED: dicer1 isoform 1 [Pan troglodytes] Length = 1930 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1899 IAKSAAARRALR 1910 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372 >gi|327259078|ref|XP_003214365.1| PREDICTED: endoribonuclease Dicer-like isoform 1 [Anolis carolinensis] Length = 1918 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 103/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y+F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1662 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1721 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110 G L+ ++LV+ + +A + D + + VS +L + F Sbjct: 1722 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1781 Query: 111 ------------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1782 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWHVYYPMMRPLIEKF 1841 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1842 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1894 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1895 IAKSAAARRALR 1906 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1290 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1347 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1348 KVSNCNLYRLGKKKGLPSRMVVS 1370 >gi|119602001|gb|EAW81595.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Homo sapiens] Length = 1923 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1847 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1899 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1900 IAKSAAARRALR 1911 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1284 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1341 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1342 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1373 >gi|297695799|ref|XP_002825114.1| PREDICTED: endoribonuclease Dicer-like isoform 1 [Pongo abelii] gi|297695801|ref|XP_002825115.1| PREDICTED: endoribonuclease Dicer-like isoform 2 [Pongo abelii] gi|297695803|ref|XP_002825116.1| PREDICTED: endoribonuclease Dicer-like isoform 3 [Pongo abelii] Length = 1922 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1899 IAKSAAARRALR 1910 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372 >gi|29294649|ref|NP_085124.2| endoribonuclease Dicer isoform 1 [Homo sapiens] gi|29294651|ref|NP_803187.1| endoribonuclease Dicer isoform 1 [Homo sapiens] gi|257051056|sp|Q9UPY3|DICER_HUMAN RecName: Full=Endoribonuclease Dicer; AltName: Full=Helicase with RNase motif; Short=Helicase MOI gi|20521696|dbj|BAA76772.2| KIAA0928 protein [Homo sapiens] gi|119602002|gb|EAW81596.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Homo sapiens] gi|152012889|gb|AAI50288.1| Dicer 1, ribonuclease type III [Homo sapiens] gi|307685563|dbj|BAJ20712.1| dicer 1, ribonuclease type III [synthetic construct] Length = 1922 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1899 IAKSAAARRALR 1910 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372 >gi|296215831|ref|XP_002754304.1| PREDICTED: endoribonuclease Dicer isoform 1 [Callithrix jacchus] gi|296215833|ref|XP_002754305.1| PREDICTED: endoribonuclease Dicer isoform 2 [Callithrix jacchus] gi|296215835|ref|XP_002754306.1| PREDICTED: endoribonuclease Dicer isoform 3 [Callithrix jacchus] Length = 1922 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1899 IAKSAAARRALR 1910 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372 >gi|114654613|ref|XP_001154199.1| PREDICTED: dicer1 isoform 3 [Pan troglodytes] gi|114654615|ref|XP_001154247.1| PREDICTED: dicer1 isoform 4 [Pan troglodytes] gi|114654617|ref|XP_001154306.1| PREDICTED: dicer1 isoform 5 [Pan troglodytes] gi|114654619|ref|XP_001154369.1| PREDICTED: endoribonuclease Dicer isoform 6 [Pan troglodytes] Length = 1922 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1899 IAKSAAARRALR 1910 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372 >gi|5019620|dbj|BAA78691.1| helicase-MOI [Homo sapiens] Length = 1924 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1668 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1727 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110 G L+ ++LV+ + +A + D + + VS +L + F Sbjct: 1728 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1787 Query: 111 ------------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1788 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1847 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1848 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1900 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1901 IAKSAAARRALR 1912 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1285 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1342 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1343 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1374 >gi|332223646|ref|XP_003260983.1| PREDICTED: endoribonuclease Dicer isoform 1 [Nomascus leucogenys] gi|332223648|ref|XP_003260984.1| PREDICTED: endoribonuclease Dicer isoform 2 [Nomascus leucogenys] Length = 1922 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1899 IAKSAAARRALR 1910 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1292 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1349 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1350 KVSNCNLYRLGKKKGLPSRMVVS 1372 >gi|194225335|ref|XP_001496219.2| PREDICTED: similar to Endoribonuclease Dicer (Helicase with RNase motif) (Helicase MOI) [Equus caballus] Length = 1785 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1529 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1588 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1589 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1648 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 1649 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1708 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1709 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1761 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1762 IAKSAAARRALR 1773 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1157 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1214 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1215 KVSNCNLYRLGKKKGLPSRMVVS 1237 >gi|193787170|dbj|BAG52376.1| unnamed protein product [Homo sapiens] Length = 820 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 564 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 623 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 624 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 683 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 684 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 743 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 744 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 796 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 797 IAKSAAARRALR 808 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 181 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 238 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 239 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 270 >gi|297848414|ref|XP_002892088.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp. lyrata] gi|297337930|gb|EFH68347.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp. lyrata] Length = 1962 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 23/154 (14%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + ++ + LE+ + + F + LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1607 LKSIDFVGLERALKFEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1666 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115 + S G L+ + V+ E ++VA + L ++R SS L K + F+ +Q Sbjct: 1667 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESS 1726 Query: 116 ------------------ADVVESLIAALYLDGG 131 D+VES+ A++LD G Sbjct: 1727 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG 1760 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S L L+ I Y +LE ALT +S ++ YER E LGD L ++S LF Sbjct: 1392 SMLLAVQLKNLISYPIPTSKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRYLFL 1448 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + EG+L+ +VS Q A L S+I+ Sbjct: 1449 KYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1485 >gi|21665773|emb|CAB38857.2| hypothetical helicase K12H4.8-like protein [Homo sapiens] Length = 1912 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1656 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1715 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1716 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1775 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 1776 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1835 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1836 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1888 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1889 IAKSAAARRALR 1900 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1273 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1330 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1331 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1362 >gi|300775975|ref|ZP_07085834.1| ribonuclease III [Chryseobacterium gleum ATCC 35910] gi|300505108|gb|EFK36247.1| ribonuclease III [Chryseobacterium gleum ATCC 35910] Length = 254 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 4/123 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L+K +G N +L +A + + S + +YERLEFLGD +LG +IS LF + A Sbjct: 28 TELKKVLGTEVQNIALYREAFSLKNSSKNQDSNYERLEFLGDSVLGTIISCHLFQTYPQA 87 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ + +V+ + +++ +L L + ++ + + +I ++ E+LI A+ Sbjct: 88 NEGYLTQMKSKIVNRKNLNKLGEDLKLTNLLQKQN----SSSALGENISGNLFEALIGAV 143 Query: 127 YLD 129 YLD Sbjct: 144 YLD 146 >gi|170017643|ref|YP_001728562.1| dsRNA-specific ribonuclease [Leuconostoc citreum KM20] gi|238688973|sp|B1N016|RNC_LEUCK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|169804500|gb|ACA83118.1| dsRNA-specific ribonuclease [Leuconostoc citreum KM20] Length = 233 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 10/196 (5%) Query: 17 FANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N +LL +ALT + + + + Y+RLEFLGD ++ + ++ LF + + EG+L+ Sbjct: 18 FNNETLLLEALTQRNYLNEHPDEPGRDYQRLEFLGDSVMQVSVAEYLFKRYPNWHEGQLT 77 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 ++V + + +R L IR+ S+ D+ E+ I ALYLD G Sbjct: 78 EMRIAMVQTRSFAHFSRVAHLNEGIRLGKGEEMSGARDRDSLLEDIWEAFIGALYLDQGF 137 Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF- 189 E F+D+ A+ + F R D K+ LQE V +Y+ H+ + Sbjct: 138 EAVRKFLDQTLFA-AVDTDFFDRFIDFKSRLQEKLQKNGAVDIDYRTENEQQLSHNAQLF 196 Query: 190 --TVVVEISGLAPAQG 203 +V V+ LA G Sbjct: 197 EASVSVDDHELARGTG 212 >gi|126290301|ref|XP_001367933.1| PREDICTED: similar to Dicer protein [Monodelphis domestica] Length = 1923 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1667 FENFEKKINYNFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1846 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1847 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1899 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1900 IAKSAAARRALR 1911 Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1295 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1352 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1353 KVSNCNLYRLGKKKGLPSRMVVS 1375 >gi|121714731|ref|XP_001274976.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1] gi|158706439|sp|A1C9M6|DCL2_ASPCL RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl2; Includes: RecName: Full=ATP-dependent helicase dcl2 gi|119403130|gb|EAW13550.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1] Length = 1389 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 60/101 (59%), Gaps = 5/101 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L++ I Y F N SLL +ALTH S + + +SY+RLEFLGD +L ++I + +FNH Sbjct: 1099 HDRLKRHISYTFENESLLVEALTHPSCDYDASTQSYQRLEFLGDAVLDMIIVSAIFNHPV 1158 Query: 65 SAKEGELSVRFNSLVSAE----TCSQVARELDLASFIRVSS 101 +G ++ ++LV+A C + A + AS ++S+ Sbjct: 1159 QMPQGHMTKIKHALVNANLLAFLCMEFAIPEERASVEQIST 1199 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 15/127 (11%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97 +Y+R EFLGD IL +S LF + EG LS + +V ++ A + L +F+ Sbjct: 953 NYQRYEFLGDSILKFSVSCQLFFKHPNWHEGYLSEGRDEIVQNPRLTKAALDTGLDAFVI 1012 Query: 98 ------------RVSSDLRKDVCSFMTS--IQADVVESLIAALYLDGGIEVAGTFVDKYW 143 +S L + S + ADVVE+LI A Y+DGG A + ++ Sbjct: 1013 TKMFTPRKWSAPLISERLERVAGKRQVSSKVLADVVEALIGAAYMDGGHAAAQACIRRFL 1072 Query: 144 KQRALKS 150 + L S Sbjct: 1073 PEINLHS 1079 >gi|73963940|ref|XP_537547.2| PREDICTED: similar to dicer1 isoform 1 [Canis familiaris] Length = 1923 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1846 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1847 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1899 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1900 IAKSAAARRALR 1911 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1293 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1350 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVS 1373 >gi|169768544|ref|XP_001818742.1| ATP-dependent helicase dcl2 [Aspergillus oryzae RIB40] gi|121804870|sp|Q2UNX5|DCL2_ASPOR RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl2; Includes: RecName: Full=ATP-dependent helicase dcl2 gi|83766600|dbj|BAE56740.1| unnamed protein product [Aspergillus oryzae] Length = 1377 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 1/75 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L++ +GY F N LL +ALTH S H +SY+RLEFLGD IL ++I ++F + + Sbjct: 1095 LQRHLGYTFKNEDLLIEALTHPSCQHDQTTQSYQRLEFLGDAILDMVIVPIIFQYSNKIS 1154 Query: 68 EGELSVRFNSLVSAE 82 G++++ +++V+A Sbjct: 1155 PGDMTLIKHAVVNAN 1169 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 15/108 (13%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +Y+R EFLGD IL ++S LF + EG L+ ++V ++ A + L SFI Sbjct: 945 NYQRYEFLGDSILKYIVSCQLFFQNLNWPEGFLTEGRTTIVQNPRLTRAALDAGLDSFII 1004 Query: 99 VSS-DLRKDVCSFMTS--------------IQADVVESLIAALYLDGG 131 + R+ + +++ + ADV+E+LI A YLDGG Sbjct: 1005 TKALTPRRWIAPLISTRVGAAPVKRQMSAKVLADVIEALIGAAYLDGG 1052 >gi|73963946|ref|XP_868526.1| PREDICTED: similar to dicer1 isoform 4 [Canis familiaris] Length = 1900 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1644 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1703 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1704 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1763 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 1764 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1823 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1824 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1876 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1877 IAKSAAARRALR 1888 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1293 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1350 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVS 1373 >gi|73963944|ref|XP_868522.1| PREDICTED: similar to Endoribonuclease Dicer (Helicase with RNase motif) (Helicase-MOI) isoform 3 [Canis familiaris] Length = 821 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 565 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 624 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 625 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 684 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 685 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 744 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 745 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 797 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 798 IAKSAAARRALR 809 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 191 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 248 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 249 KVSNCNLYRLGKKKGLPSRMVVS 271 >gi|109478606|ref|XP_001068155.1| PREDICTED: dicer 1, ribonuclease type III [Rattus norvegicus] gi|109479876|ref|XP_001069041.1| PREDICTED: dicer 1, ribonuclease type III [Rattus norvegicus] gi|149025439|gb|EDL81806.1| rCG20888 [Rattus norvegicus] Length = 1918 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1662 FENFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1721 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1722 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1781 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 1782 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1841 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1842 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1894 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1895 IAKSAAARRALR 1906 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1292 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1349 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1350 KVSNCNLYRLGKKQGLPSRMVVS 1372 >gi|19072784|gb|AAL84637.1|AF484523_1 endoribonuclease Dicer [Mus musculus] Length = 361 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 105 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 164 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 165 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 224 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y + L Sbjct: 225 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 284 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 285 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 337 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 338 IAKSAAARRALR 349 >gi|47210543|emb|CAF93935.1| unnamed protein product [Tetraodon nigroviridis] Length = 479 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E++I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 223 FENFERKISYTFQNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 282 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------VSSDLRKDVCSFM 111 G L+ ++LV+ + +A + D + + V L K+ M Sbjct: 283 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGM 342 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 343 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 402 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 403 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 455 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 456 IAKSAAARRALR 467 >gi|110520367|gb|ABG74922.1| Dicer-like 1b protein [Physcomitrella patens] Length = 1695 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 23/156 (14%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ +S+L+K +G+ F RSLL +A+TH+S Y+RLEF+GD +L LI+ LF Sbjct: 1339 MRSIDFSSLQKNVGHEFRERSLLVEAITHASRPSLGVPCYQRLEFVGDAVLDHLITRYLF 1398 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQV---------------ARELDLASFIR-VSSDLR 104 + + G L+ + V+ E ++V A E + +F+ + S+L Sbjct: 1399 FKYTNLPPGRLTDLRAAAVNNENFARVAVKHSYHLHLRHGSTALETQIRNFVNDIHSELD 1458 Query: 105 KD-VCSF------MTSIQADVVESLIAALYLDGGIE 133 K V SF + D+ ES+ AL+LD ++ Sbjct: 1459 KPGVNSFGLGDFKAPKVLGDIFESIAGALFLDARLD 1494 Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ +I Y A + ALT +S ++ SYER E L D L ++S LF F S E Sbjct: 1122 LKHQIDYPIAASKV---ALTAASGQETF--SYERAELLSDAYLEWVVSHRLFLKFPSKHE 1176 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR 98 G+L+ +VS Q A E L S+I+ Sbjct: 1177 GQLTRMRQKIVSNSVLYQHALEKGLQSYIQ 1206 >gi|308237838|ref|NP_001184123.1| endoribonuclease Dicer [Sus scrofa] gi|307715909|gb|ADN88174.1| dicer [Sus scrofa] Length = 1915 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E++I Y+F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1659 FENFERKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1718 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1719 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1778 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 1779 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1838 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1839 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1891 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1892 IAKSAAARRALR 1903 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1290 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1347 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1348 KVSNCNLYRLGKKKGLPSRMVVS 1370 >gi|257051055|sp|A0MQH0|DICER_CRIGR RecName: Full=Endoribonuclease Dicer gi|116831677|gb|ABK28790.1| DICER [Cricetulus griseus] Length = 1917 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1661 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1720 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1721 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1780 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 1781 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1840 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1841 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1893 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1894 IAKSAAARRALR 1905 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1292 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1349 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1350 KVSNCNLYRLGKKKGLPSRMVVS 1372 >gi|42733596|ref|NP_976235.1| endoribonuclease Dicer [Bos taurus] gi|257051053|sp|Q6TUI4|DICER_BOVIN RecName: Full=Endoribonuclease Dicer gi|38679195|gb|AAR26432.1| dicer [Bos taurus] Length = 1923 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1847 SANVPRSPVRELLEMEPEITKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1899 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1900 IAKSAAARRALR 1911 >gi|296475171|gb|DAA17286.1| endoribonuclease Dicer [Bos taurus] Length = 1922 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1847 SANVPRSPVRELLEMEPEITKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1899 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1900 IAKSAAARRALR 1911 >gi|126697134|ref|YP_001092020.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9301] gi|126544177|gb|ABO18419.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9301] Length = 249 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 94/204 (46%), Gaps = 7/204 (3%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +A HSS +YE+LEF GD +L L S + + GE S +VS E Sbjct: 42 FNQAFIHSSEDKII--NYEKLEFFGDAVLRLAASNFIEKKYPQLSVGERSELRAQIVSDE 99 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141 +++ R++++ I D S +I + E+LI A+Y I+ ++D Sbjct: 100 WLTKLGRKIEIDKLIIKGPKALGDENS-KNTIIGEATEALIGAVYKCFNSIQEINLWLDN 158 Query: 142 YWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGL 198 W++ + + ++ +KT LQEW +K P YK+ S + D RF+ + I GL Sbjct: 159 IWEEDSEQFLKAPYKYKSKTVLQEWCQSKGFDLPVYKIMEVSKKNGDLKRFSCDIFIEGL 218 Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222 + S + AE AA ++++ Sbjct: 219 KESSAFGKSHKQAETNAARVLIEK 242 >gi|255733032|ref|XP_002551439.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240131180|gb|EER30741.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 623 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 104/220 (47%), Gaps = 22/220 (10%) Query: 22 LLEKALTHSSI--SHSYQES-------YERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 L E+ TH S + +Y + ERLEFLGD IL L++ ++F F++ EGELS Sbjct: 255 LFERVFTHKSFVNNKNYLNNSELLKLHNERLEFLGDSILNNLVTLIIFKEFNNCNEGELS 314 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAALYLDGG 131 SL+ +T + A E + R+ S + K+ + S I ADV E+ I AL ++ G Sbjct: 315 KIRASLICNKTLLKFAYEYGFDT--RLKSFINKEAIKSGDQKIYADVFEAYIGALGIERG 372 Query: 132 I---EVAGTFVDKYWK-----QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 EV + + ++ L +AK+EL + + P+YKV G Sbjct: 373 NDLKEVQDWLIKLFEPLIFELKKDLNKEPLDNNAKSELYSLI-GRTDMHPQYKV-IEEGD 430 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +F V ++G +G++ S + A AA E LK + Sbjct: 431 GVEKKFIVSCMMNGEEIGKGVEKSIKDAGIRAAMEALKNK 470 >gi|255550219|ref|XP_002516160.1| Ribonuclease III, putative [Ricinus communis] gi|223544646|gb|EEF46162.1| Ribonuclease III, putative [Ricinus communis] Length = 1660 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 24/155 (15%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E ++GY F+ + LL++A+TH+S+ Y+RLEFLGD +L LLI+ L+ + S Sbjct: 1265 IESKLGYTFSVKFLLQEAMTHASMQEQGIGYCYQRLEFLGDSVLDLLITWHLYQNHTSMD 1324 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ----------- 115 GEL+ ++ VS E +QV DL ++ S+ L + ++ S Sbjct: 1325 PGELTDLRSACVSNENFAQVVVRRDLYKHLQHCSTLLLSQIKEYLESFHESDEVAKATGP 1384 Query: 116 ------ADVVESLIAALYLDGGIEVAGTFVDKYWK 144 D++ES+ A+ +D + +D+ W+ Sbjct: 1385 KGPKALGDLLESIAGAMLIDAKLN-----LDEVWR 1414 Score = 38.5 bits (88), Expect = 0.62, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 32/63 (50%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S ERLE LGD +L +S LF + + EG+LS + V T Q+ L +IR Sbjct: 1084 SMERLELLGDSVLKYSVSCDLFLRYPTKHEGQLSAQRTRAVCNSTLHQLGIGCKLQGYIR 1143 Query: 99 VSS 101 S+ Sbjct: 1144 DSA 1146 >gi|148686841|gb|EDL18788.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Mus musculus] Length = 1908 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1652 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1711 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1712 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1771 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y + L Sbjct: 1772 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1831 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1832 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1884 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1885 IAKSAAARRALR 1896 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +GY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1275 VGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1332 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1333 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1364 >gi|213158242|ref|YP_002320293.1| ribonuclease III [Acinetobacter baumannii AB0057] gi|215482645|ref|YP_002324839.1| Ribonuclease 3 [Acinetobacter baumannii AB307-0294] gi|213057402|gb|ACJ42304.1| ribonuclease III [Acinetobacter baumannii AB0057] gi|213986369|gb|ACJ56668.1| Ribonuclease 3 [Acinetobacter baumannii AB307-0294] gi|322509030|gb|ADX04484.1| rnc [Acinetobacter baumannii 1656-2] gi|323519012|gb|ADX93393.1| ribonuclease III [Acinetobacter baumannii TCDC-AB0715] Length = 155 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 3/148 (2%) Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG-IEVA 135 +LV E ++A +L L+ + +S+ K SI AD VE++I A+YLD + + Sbjct: 4 TLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSSDLNLL 63 Query: 136 GTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 V K++ ++ +D K+ LQE+ A+ P Y+V G F V Sbjct: 64 KDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVEC 123 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + GL+ G S+R AEQ AAAE+LK Sbjct: 124 LVDGLSKIHGEGSSRRFAEQAAAAEILK 151 >gi|148686840|gb|EDL18787.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Mus musculus] Length = 1916 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1660 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1719 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1720 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1779 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y + L Sbjct: 1780 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1839 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1840 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1892 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1893 IAKSAAARRALR 1904 Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +GY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 VGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372 >gi|117168271|ref|NP_683750.2| endoribonuclease Dicer [Mus musculus] gi|225000568|gb|AAI72621.1| Dicer1, Dcr-1 homolog (Drosophila) [synthetic construct] Length = 1906 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1650 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1709 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1710 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1769 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y + L Sbjct: 1770 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1829 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1830 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1882 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1883 IAKSAAARRALR 1894 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +GY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1273 VGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1330 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1331 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1362 >gi|71051733|gb|AAH98796.1| Dicer1 protein [Rattus norvegicus] Length = 401 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 145 FENFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 204 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 205 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 264 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 265 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 324 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 325 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVELVGKGKFKGVGRSYR 377 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 378 IAKSAAARRALR 389 >gi|257051057|sp|Q8R418|DICER_MOUSE RecName: Full=Endoribonuclease Dicer; AltName: Full=Double-strand-specific ribonuclease mDCR-1 Length = 1916 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1660 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1719 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1720 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1779 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y + L Sbjct: 1780 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1839 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1840 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1892 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1893 IAKSAAARRALR 1904 Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +GY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 VGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372 >gi|302764440|ref|XP_002965641.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii] gi|300166455|gb|EFJ33061.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii] Length = 524 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 28/167 (16%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLL 59 ++++ + LE +GY+F +R+LL +ALTHSS S YERLEF+GD +L L++ + Sbjct: 190 LNSIDFEGLENTLGYSFRSRNLLAQALTHSSSRQASMVPIYERLEFIGDAVLDHLLTRHI 249 Query: 60 FNHFDSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF-------- 110 + + G L+ +R +L S + + A + S+D + ++ Sbjct: 250 YFSYKDLHPGRLTDLRCAALNSESFARAMVKHKLHAHILHESNDFHSQIKTYAKHALNME 309 Query: 111 -------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + DV +SL+ A+Y+D G+ +D+ WK Sbjct: 310 ENAIYSYGFGAVKAPKVLGDVFQSLVGAVYIDSGLN-----LDQVWK 351 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 7/127 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L K I Y +LE ALT ++ Y YER+E LGD L +ST L+ F E Sbjct: 31 LRKAINYNIPASKILE-ALTAANCHEPY--CYERIELLGDAYLKWAVSTRLYLKFSDFPE 87 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDL----RKDVCSFMTSIQADVVESLIA 124 GEL++ ++S +A E L +++R++ + D+ + + A+VVE+LI Sbjct: 88 GELTITRGKIISNSALHYLALEKGLETYVRINPFVPGREPTDLQELSSKVLANVVEALIG 147 Query: 125 ALYLDGG 131 A Y+ G Sbjct: 148 AYYVHHG 154 >gi|20385913|gb|AAM21495.1|AF430845_1 dicer-like protein [Mus musculus] Length = 1917 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1661 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1720 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1721 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1780 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y + L Sbjct: 1781 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1840 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1841 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1893 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1894 IAKSAAARRALR 1905 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +GY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1284 VGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1341 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1342 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1373 >gi|113953295|ref|YP_729437.1| ribonuclease III [Synechococcus sp. CC9311] gi|113880646|gb|ABI45604.1| ribonuclease III [Synechococcus sp. CC9311] Length = 254 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 15/179 (8%) Query: 19 NRSLLE---KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 NR LE +ALTH+S +E+LEFLGD +L L S + + GE S Sbjct: 30 NREQLEHLNEALTHTSTG--LARHHEQLEFLGDAVLRLAASDFIESEHPQMPVGERSALR 87 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEV 134 LVS +++ + + ++V S D + T ++A+ E+LI A+Y + G + Sbjct: 88 AQLVSDRWLAELGTTIGIEVLLQVGSKASGDQAARST-LRAEHCEALIGAIYRISGKVSP 146 Query: 135 AGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEY---KVTFRSGPDHDPR 188 ++ YW++ R + + R ++K+ LQEW A+ P Y +V R G DPR Sbjct: 147 VQCWLTPYWRETSRDVLADPHRGNSKSALQEWTQAQGLGLPIYECHEVNKRHG---DPR 202 >gi|37360146|dbj|BAC98051.1| mKIAA0928 protein [Mus musculus] Length = 1475 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1219 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1278 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1279 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1338 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y + L Sbjct: 1339 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1398 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1399 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1451 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1452 IAKSAAARRALR 1463 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +GY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 842 VGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 899 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 900 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 931 >gi|302793023|ref|XP_002978277.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii] gi|300154298|gb|EFJ20934.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii] Length = 1728 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 28/167 (16%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+++ + LE IGY F +S+L +A++H+S + Y+RLEF+GD +L LI+ LF Sbjct: 1379 MNSIDFEKLELAIGYKFQMKSVLVEAISHASRPSAGVPCYQRLEFVGDAVLDHLITRYLF 1438 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQV---------------ARELDLASFIR-VSSDLR 104 + G L+ + V+ E +++ A E + F++ + S+L Sbjct: 1439 FRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHLHLRHGSSALEAQIKDFVKDIQSELD 1498 Query: 105 KD-VCSF------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 K + SF + D++ES+ A++LD G+ D+ WK Sbjct: 1499 KPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLA-----ADEVWK 1540 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 3/90 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ IG+ +LE ALT +S ++ SYER E LGD L ++S LF E Sbjct: 1161 LKHEIGFPIPAAKVLE-ALTAASCQETF--SYERAELLGDAYLKWVVSRRLFIKHPRKHE 1217 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR 98 G+L+ VS + A L S+I+ Sbjct: 1218 GQLTRMRQQTVSNMVLYEFAISKSLQSYIQ 1247 >gi|74204500|dbj|BAE23515.1| unnamed protein product [Mus musculus] Length = 514 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 258 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 317 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 318 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 377 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y + L Sbjct: 378 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 437 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 438 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 490 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 491 IAKSAAARRALR 502 >gi|302765743|ref|XP_002966292.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii] gi|300165712|gb|EFJ32319.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii] Length = 1730 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 28/167 (16%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+++ + LE IGY F +S+L +A++H+S + Y+RLEF+GD +L LI+ LF Sbjct: 1379 MNSIDFEKLELAIGYKFQMKSVLVEAISHASRPSAGVPCYQRLEFVGDAVLDHLITRYLF 1438 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQV---------------ARELDLASFIR-VSSDLR 104 + G L+ + V+ E +++ A E + F++ + S+L Sbjct: 1439 FRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHLHLRHGSSALEAQIKDFVKDIQSELD 1498 Query: 105 KD-VCSF------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 K + SF + D++ES+ A++LD G+ D+ WK Sbjct: 1499 KPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLA-----ADEVWK 1540 Score = 38.5 bits (88), Expect = 0.64, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 3/90 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ IG+ +LE ALT +S ++ SYER E LGD L ++S LF E Sbjct: 1161 LKHEIGFPIPAAKVLE-ALTAASCQETF--SYERAELLGDAYLKWVVSRRLFIKHPRKHE 1217 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR 98 G+L+ VS + A L S+I+ Sbjct: 1218 GQLTRMRQQTVSNMVLYEFAISKSLQSYIQ 1247 >gi|22830885|dbj|BAC15765.1| double-strand-specific ribonuclease MDCR [Mus musculus] Length = 1906 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1650 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1709 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1710 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1769 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y + L Sbjct: 1770 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1829 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1830 SANVPRSPVRELLEMEPETAEFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1882 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1883 IAKSAAARRALR 1894 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +GY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1273 VGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1330 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1331 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1362 >gi|270015102|gb|EFA11550.1| dicer-1 [Tribolium castaneum] Length = 1835 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 1/124 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E+ IGY F +RS L +ALTH+S S ++ + Y+RLEFLGD +L LI+ L+ Sbjct: 1579 YDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTR 1638 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A + R S +V +Q D +L+ Sbjct: 1639 MHSPGALTDLRSALVNNTIFASLAVRNGFHRYFRNLSPSLNEVVEKFVRLQEDSGHTLVD 1698 Query: 125 ALYL 128 LYL Sbjct: 1699 ELYL 1702 >gi|281339672|gb|EFB15256.1| hypothetical protein PANDA_009266 [Ailuropoda melanoleuca] Length = 1917 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 101/245 (41%), Gaps = 36/245 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1668 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1727 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR------------------ELDLASFIRVSSDLRKD 106 G L+ ++LV+ + +A +L+ + S+LR+ Sbjct: 1728 QHSPGVLTDLRSALVNNTIFASLAYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRS 1787 Query: 107 -------VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK---SGKFRRD 156 + D+ ESL A+Y+D G+ + + Y R L S R Sbjct: 1788 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRS 1847 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 EL E +P + +D + V VE+ G +G+ S R A+ AA Sbjct: 1848 PVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAA 1900 Query: 217 AEVLK 221 L+ Sbjct: 1901 RRALR 1905 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1294 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1351 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1352 KVSNCNLYRLGKKKGLPSRMVVS 1374 >gi|322510548|gb|ADX05862.1| putative ribonuclease III [Organic Lake phycodnavirus 1] Length = 293 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 61/249 (24%), Positives = 107/249 (42%), Gaps = 44/249 (17%) Query: 16 AFANRSLLEKA-LTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 AF N S +++ + +SS + Q S ERLEF+GD IL L+ L+ F A EG Sbjct: 42 AFVNSSYIKQPNIMYSSCPFNCLELKQSSNERLEFIGDGILELITKYYLYKRFPDADEGF 101 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYL 128 ++ + +LV + ++A +L L ++ +S S+ +K+ C++ + ES + AL+L Sbjct: 102 MTEKKINLVKNDHIGKLAYKLGLHKYLLLSKQSEEKKNRCNYKKL--GCLFESFLGALFL 159 Query: 129 D------------GGIEVAGTFVDKYWKQRALKSGKFRRD--AKTELQEWAHAKFGVTPE 174 D GI+ F++ + + + D K Q +F TPE Sbjct: 160 DTNETQDELFLMGNGIQYCQLFIENVFNKLVDWTEILENDDNYKNIFQVKIQKEFKCTPE 219 Query: 175 YKVT---------------FRSGPDHDPRFTVVVEISGLAP------AQGMDCSKRAAEQ 213 YK+ S +F ++ + + P G+ K+ AEQ Sbjct: 220 YKIIQQDEELRYTMGVYLYLNSKDTSSTKFELIKNLEHIKPNTNVHFGTGVHKIKKKAEQ 279 Query: 214 VAAAEVLKR 222 +A + LK+ Sbjct: 280 LACLDALKK 288 >gi|189234048|ref|XP_968993.2| PREDICTED: Dicer-1 [Tribolium castaneum] Length = 1865 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 1/124 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E+ IGY F +RS L +ALTH+S S ++ + Y+RLEFLGD +L LI+ L+ Sbjct: 1609 YDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTR 1668 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A + R S +V +Q D +L+ Sbjct: 1669 MHSPGALTDLRSALVNNTIFASLAVRNGFHRYFRNLSPSLNEVVEKFVRLQEDSGHTLVD 1728 Query: 125 ALYL 128 LYL Sbjct: 1729 ELYL 1732 >gi|149636857|ref|XP_001510982.1| PREDICTED: similar to Dicer protein [Ornithorhynchus anatinus] Length = 1921 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E++I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1665 FENFERKINYNFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111 G L+ ++LV+ + +A + D + + S L K+ M Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1784 Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S D+ ESL A+Y+D G+ + + Y R L Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1897 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1898 IAKSAAARRALR 1909 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1293 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1350 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVS 1373 >gi|224109196|ref|XP_002315119.1| dicer-like protein [Populus trichocarpa] gi|222864159|gb|EEF01290.1| dicer-like protein [Populus trichocarpa] Length = 1408 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 106/244 (43%), Gaps = 33/244 (13%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 +RY LE + Y+F + SLL +ALTH S + Y+RLEFLGD +L LI+ L+ Sbjct: 1155 VRY--LESLLNYSFRDPSLLVEALTHGSYMLPEIPSCYQRLEFLGDAVLDYLITMHLYKE 1212 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVC------------- 108 + G L+ ++ V+ + +Q A + DL I S DL K + Sbjct: 1213 YPGMSPGLLTDLRSASVNNDCYAQSAVKGDLHKHILHTSQDLHKHIVETAEIFQKSSLGS 1272 Query: 109 -------SFMTSIQADVVESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRRDAKTE 160 + + DV+ESL A+ +D G F + + + R E Sbjct: 1273 TFGWESETSFPKVLGDVIESLAGAILVDSGYNKEIVFQSIRPLLEPLITPATVRLHPARE 1332 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQVAAA 217 L E + +YK + S + T+VV +G+ A D K+ A+++A+ Sbjct: 1333 LSELCQKQHF---DYKKSVVSYNGRNASITIVVGANGVTFKHTATAAD--KKTAKKLASK 1387 Query: 218 EVLK 221 EVLK Sbjct: 1388 EVLK 1391 >gi|254423613|ref|ZP_05037331.1| ribonuclease III [Synechococcus sp. PCC 7335] gi|196191102|gb|EDX86066.1| ribonuclease III [Synechococcus sp. PCC 7335] Length = 263 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 94/199 (47%), Gaps = 7/199 (3%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LLE AL IS S ++ E+LEFLGD L L + L + G++S + +VS Sbjct: 52 LLELALV--DISSSATQNNEKLEFLGDAALRLAAAEFLMERYPQMALGDMSAVRSQIVSD 109 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVD 140 T + +A+ L ++ +S D + + AD E+++ ALYL G + + ++D Sbjct: 110 RTLATLAKRYHLRRYLILSKSAAGDKAGTDSRL-ADTFEAILGALYLSAGNLSLIRPWLD 168 Query: 141 KYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISG 197 ++ + ++L+S R++ K LQE + + P YKV+ S D RF Sbjct: 169 PHFARLTQSLRSDPARQNYKAALQELTQSHYKSLPTYKVSEISQIHGDEERFQAEAWFQD 228 Query: 198 LAPAQGMDCSKRAAEQVAA 216 G S + AEQ AA Sbjct: 229 KLWGTGKGRSMKMAEQAAA 247 >gi|167046036|gb|ABZ10549.1| dicer 1 [Nematostella vectensis] Length = 412 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 33/169 (19%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFN 61 A++ E RIGY F+N+ L +ALTH+S S + + Y+RLEFLGD +L L++ L+++ Sbjct: 236 AVQLQGFENRIGYEFSNKLYLIQALTHASYSQNRLTDCYQRLEFLGDALLDFLVTELIYS 295 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ----- 115 + GEL+ +LV+ +++A + S ++S + + F+ ++ Sbjct: 296 RNTNLDPGELTDLRQALVNNNIFAEIAVKHGFNKSLFQMSPEWFNKIGVFVDHVKEREAR 355 Query: 116 --------------------------ADVVESLIAALYLDGGIEVAGTF 138 D+ ES+ A++LD G+++ T+ Sbjct: 356 GIQISKDPFLTLSNDDEEGIEAPKVLGDIFESVAGAIFLDSGMDLVLTW 404 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 6/102 (5%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL +ALT S ++ ERLE LGD L +S L+ + EG+L+ R S +S Sbjct: 19 LLLQALTTKSAGDAF--DLERLEMLGDAFLKQAVSIFLYCCYKDGDEGKLTKRKTSQLSN 76 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMT-SIQADVVESL 122 +VA L L +++ + + D S+ T S+QA VE + Sbjct: 77 RALYRVACRLGLPEYLQ---NTQLDRVSWTTPSLQAAEVEPV 115 >gi|157120736|ref|XP_001659747.1| dicer-1 [Aedes aegypti] gi|108883036|gb|EAT47261.1| dicer-1 [Aedes aegypti] Length = 2193 Score = 61.2 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 67/259 (25%), Positives = 111/259 (42%), Gaps = 55/259 (21%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS E +GY F +RS L +A+TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1937 YSAFEDSLGYQFTDRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1996 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELD---------------LASFIRVSSD------- 102 G L+ ++LV+ + +A D + F+R+ D Sbjct: 1997 QHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHIISE 2056 Query: 103 ----LRKDVCSFMTSIQ-----ADVVESLIAALYLDGGIEVAGTFVDKYWK-QRALKSGK 152 + +D C ++ DV ES+ A++LD + +D WK R++ + Sbjct: 2057 EYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMS-----LDAVWKVYRSMMGPE 2111 Query: 153 FRRDA----KTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 + + K+ ++E AKFG PE R R V VE+ G +G Sbjct: 2112 IEQFSNSVPKSPIRELLELEPETAKFG-KPEKLADGR-------RVRVTVEVFGKGTFRG 2163 Query: 204 MDCSKRAAEQVAAAEVLKR 222 + + R A+ AA L++ Sbjct: 2164 IGRNYRIAKCTAAKCALRQ 2182 >gi|157167186|ref|XP_001652212.1| dicer-1 [Aedes aegypti] gi|108877338|gb|EAT41563.1| dicer-1 [Aedes aegypti] Length = 1658 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 100/225 (44%), Gaps = 41/225 (18%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 Y +E +GY F +R+ L +ALTH+S ++ SY++LEFLGD +L LIS +F Sbjct: 1400 NYRRIESILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQN 1459 Query: 64 DSAKEGELSVRFNSLVSAET--CSQVARELDL------ASFIRVSSDL------------ 103 + G+L+ ++LV+ T C V L L ASF S Sbjct: 1460 PTMSPGQLTDLRSALVNNVTLACILVRHGLHLYILAESASFTDTVSKFVLFQEQNKHEIT 1519 Query: 104 ----------RKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 + + F+ +A DV ESL+AA++LD G + A T+ Y + Sbjct: 1520 DQVNLLVEESDRKMAEFVDVPKALGDVFESLVAAVFLDSGNDFAATWQVIY----GMMGN 1575 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTF-RSGPDHDPRFTVVVEI 195 + + + + P K TF R+ PD D TV+V++ Sbjct: 1576 EILTFTENTPIQIVRQLYEFKPSCKPTFSRAIPDED---TVLVKL 1617 >gi|67525463|ref|XP_660793.1| hypothetical protein AN3189.2 [Aspergillus nidulans FGSC A4] gi|40743766|gb|EAA62953.1| hypothetical protein AN3189.2 [Aspergillus nidulans FGSC A4] Length = 1726 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62 ++ LE IGY F +++LL +ALTH S + +SY+RLEFLGD +L +LI L+ H Sbjct: 1351 IQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAH 1410 Query: 63 FDSAKEGELSVRFNSLVSA 81 ++GE++ +++V+ Sbjct: 1411 HVECQQGEMTKIKHAIVNG 1429 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 15/131 (11%) Query: 40 YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-- 97 Y+R EF GD +L ++ LF + + EG L+ ++LV ++ A + L ++I Sbjct: 1205 YQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYIIS 1264 Query: 98 -----------RVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 +S L S + ADVVE+LI A Y+DGG+ A + + ++ Sbjct: 1265 NRFTPRKWSAPLISEKLYASASTRSMSAKVLADVVEALIGAAYIDGGLHKAQSCIVRFLP 1324 Query: 145 QRALKSGKFRR 155 + L K R Sbjct: 1325 EIELPETKLPR 1335 >gi|294463153|gb|ADE77113.1| unknown [Picea sitchensis] Length = 173 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 77/141 (54%), Gaps = 20/141 (14%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE + Y F ++SLL++A+THSS +++ ESYE+LEF+GD +LG L++ L+ + Sbjct: 20 SELEDILKYKFKSKSLLKEAITHSSNNNT--ESYEKLEFVGDSVLGYLVTKHLYCAYPKL 77 Query: 67 KEGELSVRFNSLVSAETCSQVARE--------LDLASFIRVSSDLRKDV--------CSF 110 +G L++ + V E ++V + L+ + ++ D KD+ C Sbjct: 78 YQGTLTLLRSRNVDTEKFARVCVKHKFHQYLLLNAPALQQIIEDFVKDIEDESKSFRCGD 137 Query: 111 M--TSIQADVVESLIAALYLD 129 + AD+VES+ A+++D Sbjct: 138 FKPPKVLADIVESIAGAVFVD 158 >gi|254281220|ref|NP_001123390.2| endoribonuclease Dicer [Xenopus (Silurana) tropicalis] gi|238064965|sp|B3DLA6|DICER_XENTR RecName: Full=Endoribonuclease Dicer gi|169261418|gb|ACA52289.1| endoribonuclease [Xenopus tropicalis] Length = 1893 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 61/252 (24%), Positives = 102/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1637 FENFEKKINYPFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1696 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------------------V 99 G L+ ++LV+ + +A + D + + + Sbjct: 1697 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGM 1756 Query: 100 SSDLRKD-------VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S+LR+ + D+ ESL A+Y+D G+ + + Y + L Sbjct: 1757 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWHVYYPMMQPLIEKF 1816 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1817 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1869 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1870 IAKSAAARRALR 1881 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS Sbjct: 1269 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLS 1321 >gi|188593364|emb|CAO78751.1| Oikopleura cytoplasmic RNAse III enzyme Dicer [Oikopleura dioica] Length = 1814 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 53/190 (27%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64 Y EK+IGY F N+ L ++LTH+S ++ Y+RLEFLGD +L LI+ LF+H Sbjct: 1544 YGEFEKKIGYTFKNKGYLLQSLTHASYQYNQVTNCYQRLEFLGDAVLDFLITRHLFDHPT 1603 Query: 65 SA-KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDL-------------RKDVCS 109 GEL+ +LV+ + +A + D ++ ++ DL R+DV Sbjct: 1604 KRFSPGELTDLRAALVNNNIFAALAVKFDFHKYLYALTPDLHNVIRDYVLYCQTRQDVEG 1663 Query: 110 F---------------------------MTSIQADVVESLIAALYLDGGIEVAGT----- 137 + + D+ ES+ A+YLD G+ + Sbjct: 1664 MEAVLKRIRLEEEPEEEEGDHEDSEDIEVPKVLGDIYESVAGAIYLDSGMNLDAVWGVYR 1723 Query: 138 -----FVDKY 142 ++DKY Sbjct: 1724 PMLQKYIDKY 1733 >gi|307169911|gb|EFN62420.1| Endoribonuclease Dcr-1 [Camponotus floridanus] Length = 506 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 34/157 (21%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E +IGY F NR+ L +A TH S + + E Y+RLEFLGD IL LI+ ++ + Sbjct: 254 METKIGYKFNNRAFLLQAFTHPSYTPNVITECYQRLEFLGDAILDFLITCYIYETCGNLS 313 Query: 68 EGELSVRFNSLVSAET--CSQVARELDLA-------------SFIRVSSDLRKDV----- 107 G L+ ++LV+ T C V LD A F++ + V Sbjct: 314 PGHLTDLRSALVNNITFACLAVRYGLDTALLSYAPKLHEAIDRFVKFQQERNYVVNDELL 373 Query: 108 --------CSF-----MTSIQADVVESLIAALYLDGG 131 C+ + + D+ ESLI A+YLD G Sbjct: 374 WVLLEEEECNLAEYVDVPKVLGDLFESLIGAIYLDSG 410 >gi|37522217|ref|NP_925594.1| ribonuclease III [Gloeobacter violaceus PCC 7421] gi|35213217|dbj|BAC90589.1| ribonuclease III [Gloeobacter violaceus PCC 7421] Length = 242 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 91/200 (45%), Gaps = 11/200 (5%) Query: 22 LLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LL +AL H S S E +RLEFLGD IL LL + L+ GE++ + LVS Sbjct: 33 LLHRALIHPSWSAQEGGEDNDRLEFLGDEILRLLAAEFLYRADPELTVGEMTAVRSVLVS 92 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFV 139 +++A DL F+ V D +T + AD E++I ALYL G + + ++ Sbjct: 93 DVALAELAEGYDLGEFLVVGRSASGDERGRITRL-ADGFEAVIGALYLSTGDLGLIRPWL 151 Query: 140 DKYWKQRA--LKSGKFRRDAKTELQEWAHA-KFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + A + + R + K+ LQE G PEY++ D P F V Sbjct: 152 LPHLAHLAESVMADPTRGNHKSALQELTQKLAAGELPEYRLV-----DPGPPFRYEVWAL 206 Query: 197 GLAPAQGMDCSKRAAEQVAA 216 G G SK+ A+Q AA Sbjct: 207 GRLWGSGEGPSKKLAQQRAA 226 >gi|120437705|ref|YP_863391.1| ribonuclease III [Gramella forsetii KT0803] gi|117579855|emb|CAL68324.1| ribonuclease III [Gramella forsetii KT0803] Length = 243 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 73/130 (56%), Gaps = 10/130 (7%) Query: 16 AFANRSLL--EKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 F +S+L +KA TH S++ ++ ++ER+EFLGD +L ++++ LF EG Sbjct: 27 GFKPKSILHYKKAFTHRSLNRRDEDGNAINFERMEFLGDAMLSAVVASHLFKAVPGGNEG 86 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 L+ + +VS + +++ ++L L V +++ KD F +I ++ E+L+ A+YLD Sbjct: 87 YLTKMRSKVVSRKHLNELGKDLGLIE--HVQTNIPKD--QFGVNIHGNLFEALVGAIYLD 142 Query: 130 GGIEVAGTFV 139 G + F+ Sbjct: 143 RGYKHCKRFI 152 >gi|63054443|ref|NP_588215.2| dicer [Schizosaccharomyces pombe 972h-] gi|1351642|sp|Q09884|DCR1_SCHPO RecName: Full=Protein Dicer; AltName: Full=Cell cycle control protein dcr1; AltName: Full=RNA interference pathway protein dcr1; Includes: RecName: Full=Endoribonuclease dcr1; Includes: RecName: Full=ATP-dependent helicase dcr1 gi|157310516|emb|CAB41233.2| dicer [Schizosaccharomyces pombe] Length = 1374 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 25/153 (16%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S +E+ IGY+F N+ LL A H S+ E+Y++LEFLGD +L +I L+ + Sbjct: 1084 SYIEETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYP 1143 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQA------- 116 +A GEL+ + V ++ S + L+L +I+ S D + + I+A Sbjct: 1144 NATSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRETASE 1203 Query: 117 ---------------DVVESLIAALYLDGGIEV 134 D +E++I A++LD G + Sbjct: 1204 NPWFWFEIDSPKFISDTLEAMICAIFLDSGFSL 1236 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 18/114 (15%) Query: 40 YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF-IR 98 Y+RLEF GD L L S +F F +E +L ++S +VA + +L + + Sbjct: 929 YDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELPKYALS 988 Query: 99 VSSDLRK-----------DVCSFMT----SIQ--ADVVESLIAALYLDGGIEVA 135 ++R D C + S++ AD+VE+ I A LD G++ A Sbjct: 989 TPLEIRHWCPYGFQKSTSDKCRYAVLQKLSVKRIADMVEASIGACLLDSGLDSA 1042 >gi|57236096|gb|AAW48725.1| dicer-2 [Aedes aegypti] Length = 1658 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 100/225 (44%), Gaps = 41/225 (18%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 Y +E +GY F +R+ L +ALTH+S ++ SY++LEFLGD +L LIS +F Sbjct: 1400 NYRRIEGILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQN 1459 Query: 64 DSAKEGELSVRFNSLVSAET--CSQVARELDL------ASFIRVSSDL------------ 103 + G+L+ ++LV+ T C V L L ASF S Sbjct: 1460 PTMSPGQLTDLRSALVNNVTLACILVRHGLHLYILAESASFTDTVSKFVLFQEQHKHEIT 1519 Query: 104 ----------RKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 + + F+ +A DV ESL+AA++LD G + A T+ Y + Sbjct: 1520 DQVNLLVEESDRKMAEFVDVPKALGDVFESLVAAVFLDSGNDFAATWQVIY----GMMGN 1575 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTF-RSGPDHDPRFTVVVEI 195 + + + + P K TF R+ PD D TV+V++ Sbjct: 1576 EILTFTENTPIQIVRQLYEFKPSCKPTFSRAIPDED---TVLVKL 1617 >gi|259485853|tpe|CBF83228.1| TPA: Dicer-like protein 2 [Includes Endoribonuclease dcl2(EC 3.1.26.-);ATP-dependent helicase dcl2(EC 3.6.1.-)] [Source:UniProtKB/Swiss-Prot;Acc:P0C5H7] [Aspergillus nidulans FGSC A4] Length = 1269 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62 ++ LE IGY F +++LL +ALTH S + +SY+RLEFLGD +L +LI L+ H Sbjct: 894 IQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAH 953 Query: 63 FDSAKEGELSVRFNSLVSA 81 ++GE++ +++V+ Sbjct: 954 HVECQQGEMTKIKHAIVNG 972 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 15/131 (11%) Query: 40 YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-- 97 Y+R EF GD +L ++ LF + + EG L+ ++LV ++ A + L ++I Sbjct: 748 YQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYIIS 807 Query: 98 -----------RVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 +S L S + ADVVE+LI A Y+DGG+ A + + ++ Sbjct: 808 NRFTPRKWSAPLISEKLYASASTRSMSAKVLADVVEALIGAAYIDGGLHKAQSCIVRFLP 867 Query: 145 QRALKSGKFRR 155 + L K R Sbjct: 868 EIELPETKLPR 878 >gi|158706440|sp|P0C5H7|DCL2_EMENI RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl2; Includes: RecName: Full=ATP-dependent helicase dcl2 Length = 1429 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62 ++ LE IGY F +++LL +ALTH S + +SY+RLEFLGD +L +LI L+ H Sbjct: 1054 IQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAH 1113 Query: 63 FDSAKEGELSVRFNSLVSA 81 ++GE++ +++V+ Sbjct: 1114 HVECQQGEMTKIKHAIVNG 1132 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 15/131 (11%) Query: 40 YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-- 97 Y+R EF GD +L ++ LF + + EG L+ ++LV ++ A + L ++I Sbjct: 908 YQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYIIS 967 Query: 98 -----------RVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 +S L S + ADVVE+LI A Y+DGG+ A + + ++ Sbjct: 968 NRFTPRKWSAPLISEKLYASASTRSMSAKVLADVVEALIGAAYIDGGLHKAQSCIVRFLP 1027 Query: 145 QRALKSGKFRR 155 + L K R Sbjct: 1028 EIELPETKLPR 1038 >gi|223944141|gb|ACN26154.1| unknown [Zea mays] Length = 206 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58 MSA + +E +GY F ++SL+E ALTH S + ++YERLE+LGD +L L+S Sbjct: 43 MSAKDVTAIEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSRE 102 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV--CSFMTSIQA 116 +F + + + G L+ + V E ++VA L F+R + +D C+ + Q Sbjct: 103 VFRTYRTLQPGPLTRLRAANVDTEKLARVAVHRGLHRFLRHKAPKLQDQKKCANIQFTQM 162 Query: 117 D 117 D Sbjct: 163 D 163 >gi|313236326|emb|CBY11646.1| unnamed protein product [Oikopleura dioica] Length = 1519 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 53/190 (27%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64 Y EK+IGY F N+ L ++LTH+S ++ Y+RLEFLGD +L LI+ LF+H Sbjct: 1249 YGEFEKKIGYTFKNKGYLLQSLTHASYQYNQVTNCYQRLEFLGDAVLDFLITRHLFDHPT 1308 Query: 65 SA-KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDL-------------RKDVCS 109 GEL+ +LV+ + +A + D ++ ++ DL R+DV Sbjct: 1309 KRFSPGELTDLRAALVNNNIFAALAVKFDFHKYLYALTPDLHNVIRDYVLYCQTRQDVEG 1368 Query: 110 F---------------------------MTSIQADVVESLIAALYLDGGIEVAGT----- 137 + + D+ ES+ A+YLD G+ + Sbjct: 1369 MEAVLKRIRLEEEPEEEEGDHEDSEDIEVPKVLGDIYESVAGAIYLDSGMNLDAVWGVYR 1428 Query: 138 -----FVDKY 142 ++DKY Sbjct: 1429 PMLQKYIDKY 1438 >gi|326693698|ref|ZP_08230703.1| ribonuclease III [Leuconostoc argentinum KCTC 3773] Length = 240 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 8/202 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L F + LL +ALT + + + Y+RLEFLGD ++ + ++ LF + Sbjct: 17 LRTEFNIVFHDEDLLLEALTQRNYLNEHPNEPGRDYQRLEFLGDSVMQVSVAEYLFKRYP 76 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+L+ ++V + + +R + L +R+ S+ D+ E+ I Sbjct: 77 NWHEGQLTEMRIAMVQTRSFAHFSRLVHLNEAVRLGKGEEMSGARERDSLLEDIWEAFIG 136 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G + F+++ A+ +G F R D K+ LQE V +Y+ Sbjct: 137 ALYLDQGADAVQEFLERTLFA-AIDTGFFDRFIDFKSRLQEKLQVNGAVVIDYQTEREQA 195 Query: 183 -PDHDPRFTVVVEISGLAPAQG 203 D F V + G A+G Sbjct: 196 MADKTQVFEASVSVDGHELARG 217 >gi|242076428|ref|XP_002448150.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor] gi|241939333|gb|EES12478.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor] Length = 698 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 26/164 (15%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + S LE+ IGY F ++ LL +A H S + Y+R+EFLGD +L L+++ L+ Sbjct: 247 MNYMNISELEELIGYTFKHKGLLLQAFVHPSFNKHSGGCYQRMEFLGDAVLDYLMASYLY 306 Query: 61 NHFDSAKEGELS------VRFNSLVSAETCSQVAREL------------DLASFIRVSSD 102 + + K G+L+ + NS + + L +++ +SS Sbjct: 307 SAYPDLKPGQLTDLKSLALNNNSFAYVAVKKSIHKYLIKDSKSLTAAINKFQNYVNLSSS 366 Query: 103 LRKDVCSFMTS--IQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 KD+ T + D+VES + A+ LD G ++ WK Sbjct: 367 -EKDLLEEPTCPKVLGDIVESCVGAVLLDSGFN-----LNHVWK 404 >gi|189908862|gb|ACE60552.1| dicer-like protein 2 [Brassica rapa] Length = 1392 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 25/151 (16%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 +RY +E + Y F ++SLL +ALTH S + Y+RLEFLGD +L LI+ L+ Sbjct: 1148 VRY--MESLLNYKFKDKSLLVEALTHGSYMIPEIPRCYQRLEFLGDSVLDYLITKHLYGE 1205 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF------MTSIQ 115 + + G L+ ++ V+ E +QVA + +L + S DL K + ++S+Q Sbjct: 1206 YPNLSPGLLTDMRSASVNNECYAQVAVKSNLHKHVLHASHDLHKHISRTVSEFERLSSVQ 1265 Query: 116 A---------------DVVESLIAALYLDGG 131 + DV+ESL A+++D G Sbjct: 1266 SSFGWESEIAFPKVLGDVIESLAGAIHVDSG 1296 >gi|283131646|dbj|BAI63215.1| Dicer [Hemicentrotus pulcherrimus] Length = 1816 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 35/168 (20%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y EK I Y F +R+ L +A THSS +S + Y+RLEFLGD +L LI+ L++H Sbjct: 1562 YDGFEKTINYRFKDRAYLLQAFTHSSYHRNSITDCYQRLEFLGDALLDYLITRHLYDHHT 1621 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQA------- 116 + G L+ ++LV+ + +A + + + + ++++ + + +F+T + A Sbjct: 1622 NLSPGALTDLRSALVNNTIFASLAVKFNFHKYFKAYTANMFQVIDNFVTFVDAKNEALGM 1681 Query: 117 --------------------------DVVESLIAALYLDGGIEVAGTF 138 D+ ES+ A+YLD G+ + + Sbjct: 1682 DSQLKYSEMDGEQEESEDIEVPKALGDIFESVAGAIYLDSGMSLNAVW 1729 >gi|328871085|gb|EGG19456.1| hypothetical protein DFA_00033 [Dictyostelium fasciculatum] Length = 1106 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 6/102 (5%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 +SYERLEFLGD L L+IS L++ F +EG LS LV E +Q++++++L+ I Sbjct: 887 DSYERLEFLGDAFLDLVISKHLYDQFPDKQEGFLSTARAGLVKNEALAQISQKINLSLAI 946 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 SD F D++E+ I L LD G+E F+ Sbjct: 947 ---SDPH---IHFTVKRLGDLLEAFIGCLLLDCGMEKTKYFI 982 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 26/142 (18%) Query: 16 AFANRSLLEKALTHSS---ISHSYQESY-------------ERLEFLGDRILGLLISTLL 59 + N LL + TH S I+ +SY +RLEFLGD +L + L Sbjct: 696 SIKNDLLLRQVFTHPSTKMINSLVPQSYNIFRDYLPFDGDNQRLEFLGDSVLKFCTTYYL 755 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR--VSSDLRKDVCSFMTSIQAD 117 + + +EG+L+ + + + S ++ +R V+ D++K +AD Sbjct: 756 YFKYPQLREGQLTSKRSEITSNSYLLSKCERWNVVDLLRFTVTEDMKKP--------KAD 807 Query: 118 VVESLIAALYLDGGIEVAGTFV 139 V+E++ AL+++ G++ A F+ Sbjct: 808 VMEAIFGALFIERGVKEAYQFI 829 >gi|119487463|ref|XP_001262524.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181] gi|158705692|sp|A1D9Z6|DCL2_NEOFI RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl2; Includes: RecName: Full=ATP-dependent helicase dcl2 gi|119410681|gb|EAW20627.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181] Length = 1388 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 1/75 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ IGY F + SLL +ALTH S + S +SY+RLE+LGD +L ++I + +FNH Sbjct: 1101 LKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHPIQRP 1160 Query: 68 EGELSVRFNSLVSAE 82 +G+++ +++V+A Sbjct: 1161 QGDMTKIKHAVVNAN 1175 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 19/110 (17%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97 +Y+R EFLGD IL +S LF + EG LS +V ++ A + L ++I Sbjct: 952 NYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGRAMIVQNPRLAKAALDTGLDAYIV 1011 Query: 98 --RVSSDLRKDVCSFM--------------TSIQADVVESLIAALYLDGG 131 R++S RK + T + ADVVE+LI A Y+DGG Sbjct: 1012 TKRIAS--RKWSAPLISEKLERVPAKRQMSTKVLADVVEALIGAAYMDGG 1059 >gi|302318908|ref|NP_001180543.1| dicer-2 [Bombyx mori] gi|300669733|dbj|BAJ11655.1| DICER-2 [Bombyx mori] Length = 1677 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 34/159 (21%) Query: 7 STLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +EK + Y F + + L AL+HSS I + SYERLEFLGD I+ L+++ +F + Sbjct: 1424 TDVEKILNYTFKDSTFLLNALSHSSYIRNRLTSSYERLEFLGDAIIDFLVTSHIFENCRE 1483 Query: 66 AKEGELSVRFNSLVSAET--------------CSQVARELDLASF------IRVSSDLRK 105 K GE++ ++LV+ T CS++ L+ A I + ++ Sbjct: 1484 LKPGEMTDLRSALVNNVTFAAYTVKLGLHKYLCSELNPSLEKAIMKFVEHQIERNHEIEF 1543 Query: 106 DVCSFMTSIQ-------------ADVVESLIAALYLDGG 131 DV ++ + +D+ E+L+ A+YLD G Sbjct: 1544 DVLLLISEVDCQVAEYVDVPKVLSDIFEALVGAVYLDSG 1582 >gi|255589974|ref|XP_002535144.1| dicer-1, putative [Ricinus communis] gi|223523936|gb|EEF27239.1| dicer-1, putative [Ricinus communis] Length = 259 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 23/158 (14%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ + Y F NRSLLE+A T SS SYERLE +GD +L LL + + + + Sbjct: 35 VEEILKYKFKNRSLLEEAFTDSSFPGKCF-SYERLEHVGDSVLNLLFTKEHYFKYPNLPP 93 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSF----------------M 111 G L+ + V E ++VA + F+R L + + F + Sbjct: 94 GALTRLRAANVDTEKLARVAVKHGFHRFLRHKKPLLEEQIREFSQAILEYPLHSNGLVDV 153 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 + AD+VES I A+++D + + VD WK+R LK Sbjct: 154 PKVLADIVESAIGAVFID-----SNSSVDTVWKKRNLK 186 >gi|218196456|gb|EEC78883.1| hypothetical protein OsI_19246 [Oryza sativa Indica Group] gi|222630918|gb|EEE63050.1| hypothetical protein OsJ_17858 [Oryza sativa Japonica Group] Length = 350 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 32/162 (19%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ + Y F + LLE+ALTH S + SY+RLEF+GD LGL S L+ + Sbjct: 40 VERLLRYQFRDGRLLEEALTHQSFADD-AVSYQRLEFVGDSALGLAFSNFLYLTNPTLGP 98 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD--VCSFMTSIQ----------- 115 G LS + +S E ++VA DL +R + R D V F+ +++ Sbjct: 99 GPLSTLRAANISTEKLARVAVRHDLYPLLRRNCP-RLDLLVGQFIETVKQEPEDDLSTVP 157 Query: 116 ------------ADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 AD+VE++ AA+Y+D + ++K WK+ Sbjct: 158 YGGSVVKAPKVLADIVEAIAAAVYVDCKFD-----LEKLWKR 194 >gi|158706446|sp|Q4WA22|DCL2_ASPFU RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl2; Includes: RecName: Full=ATP-dependent helicase dcl2 Length = 1388 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 1/75 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ IGY F + SLL +ALTH S + S +SY+RLE+LGD +L ++I + +FNH Sbjct: 1101 LKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHRIQRP 1160 Query: 68 EGELSVRFNSLVSAE 82 +G+++ +++V+A Sbjct: 1161 QGDMTKIKHAVVNAN 1175 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 19/144 (13%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97 +Y+R EFLGD IL +S LF + EG LS + +V ++ A + L ++I Sbjct: 952 NYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGRDMIVQNPRLAKAALDTGLDAYIV 1011 Query: 98 --RVSSDLRKDVCSFM--------------TSIQADVVESLIAALYLDGGIEVAGTFVDK 141 R++S RK + T + ADVVE+LI A Y+DGG A + + Sbjct: 1012 TKRLAS--RKWSAPLISEKLGRVPAKRQMSTKVLADVVEALIGAAYVDGGHSTAQACIRR 1069 Query: 142 YWKQRALKSGKFRRDAKTELQEWA 165 + + L + R A++ E A Sbjct: 1070 FLPEINLHAVDTRTAARSVAPESA 1093 >gi|251765118|sp|Q6ATG6|RTL2_ORYSJ RecName: Full=Ribonuclease 3-like protein 2; AltName: Full=Ribonuclease III-like protein 2; Short=RNase III-like protein 2 Length = 317 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 30/160 (18%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ + Y F + LLE+ALTH S + SY+RLEF+GD LGL S L+ + Sbjct: 40 VERLLRYQFRDGRLLEEALTHQSFADDAV-SYQRLEFVGDSALGLAFSNFLYLTNPTLGP 98 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLRKDVCSF-- 110 G LS + +S E ++VA DL +R V + D+ + Sbjct: 99 GPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTVPY 158 Query: 111 ------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + AD+VE++ AA+Y+D + ++K WK Sbjct: 159 GGSVVKAPKVLADIVEAIAAAVYVDCKFD-----LEKLWK 193 >gi|40063138|gb|AAR37985.1| ribonuclease III [uncultured marine bacterium 561] Length = 149 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 59/119 (49%), Gaps = 8/119 (6%) Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKT 159 RK SI AD VE++ A+ LD G + A + +W AL G+ + +D+KT Sbjct: 25 RKSGGRHRASILADTVEAIAGAMLLDAGYDNAAPVI-LHWFADAL--GELQVDGDKDSKT 81 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAA 217 LQEW A+ P Y + GPDH F VV I G A G S+R AEQ AA+ Sbjct: 82 LLQEWLQARNLPLPSYDLVSVEGPDHAQEFEVVCLIKGQKNAFSGRGSSRRNAEQQAAS 140 >gi|198421916|ref|XP_002122382.1| PREDICTED: similar to rCG20888 [Ciona intestinalis] Length = 2053 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 64/270 (23%), Positives = 106/270 (39%), Gaps = 67/270 (24%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S E++I Y F N++ L +A TH+S + + + Y+RLEFLGD +L LI+ LFN Sbjct: 1788 SGFERKINYTFKNKAYLLQAFTHASYYYNTVTDCYQRLEFLGDAVLDFLITRHLFNDERH 1847 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ--------- 115 G L+ ++LV+ + +A D + + +S +L + F+ Q Sbjct: 1848 HSPGALTDLRSALVNNTIFASLAVHYDFHKYFKSISPELHHIIEDFVMYQQKQEDAQGMD 1907 Query: 116 ------------------------------------ADVVESLIAALYLDGGIEVAGTFV 139 D+ ES+ A+Y+D G++++ Sbjct: 1908 AHLMRDYDRVEIVAPSSLEKDEEEGENEDVEVPKALGDIFESVAGAIYMDSGMDLSSV-- 1965 Query: 140 DKYWKQRALK--------SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 WK ++ S R EL E + PE + +D + V Sbjct: 1966 ---WKVYSVMMLPLIEKFSACVPRSPVRELLE-------MEPETAKFSCAEKRYDGKVRV 2015 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 VEI G +G+ S R A+ AA L+ Sbjct: 2016 TVEIIGKGRFKGVGRSYRIAKSAAARRALR 2045 Score = 36.2 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 L+ +ALT S+ S + + ERLE LGD L ++ L+ + + EG+LS + VS Sbjct: 1460 LILQALTLSNASDGF--NLERLEMLGDSFLKHAVTVYLYCTYPESHEGKLSYMRSKKVSN 1517 Query: 82 ETCSQVARELDLA 94 ++ ++ LA Sbjct: 1518 YNLYRIGKQFGLA 1530 >gi|159122296|gb|EDP47418.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus A1163] Length = 1384 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 1/75 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ IGY F + SLL +ALTH S + S +SY+RLE+LGD +L ++I + +FNH Sbjct: 1097 LKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHRIQRP 1156 Query: 68 EGELSVRFNSLVSAE 82 +G+++ +++V+A Sbjct: 1157 QGDMTKIKHAVVNAN 1171 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 19/144 (13%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97 +Y+R EFLGD IL +S LF + EG LS + +V ++ A + L ++I Sbjct: 948 NYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGRDMIVQNPRLAKAALDTGLDAYIV 1007 Query: 98 --RVSSDLRKDVCSFM--------------TSIQADVVESLIAALYLDGGIEVAGTFVDK 141 R++S RK + T + ADVVE+LI A Y+DGG A + + Sbjct: 1008 TKRLAS--RKWSAPLISEKLERVPAKRQMSTKVLADVVEALIGAAYVDGGHSTAQACIRR 1065 Query: 142 YWKQRALKSGKFRRDAKTELQEWA 165 + + L + R A++ E A Sbjct: 1066 FLPEINLHAVDTRTAARSVAPESA 1089 >gi|313675278|ref|YP_004053274.1| RNAse iii [Marivirga tractuosa DSM 4126] gi|312941976|gb|ADR21166.1| RNAse III [Marivirga tractuosa DSM 4126] Length = 243 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 70/131 (53%), Gaps = 7/131 (5%) Query: 13 IGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +GY L HSS++ + ++ S ERLE+LGD ILG +++ LF + E Sbjct: 27 VGYKPFRLELFRLVTQHSSVAKTLPNGFRASNERLEYLGDAILGAVVADYLFKKYPFKDE 86 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V+ E+ S +A+++ ++ + SD + F SI D++E+ I A+Y+ Sbjct: 87 GFLTEIRSRIVNRESLSLLAKKIGISQML--ESDFSRSRYHF-KSIYGDMMEAFIGAVYI 143 Query: 129 DGGIEVAGTFV 139 D G + F+ Sbjct: 144 DRGYKYCQKFI 154 >gi|70981901|ref|XP_746479.1| RNA helicase/RNAse III [Aspergillus fumigatus Af293] gi|66844102|gb|EAL84441.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus Af293] Length = 1384 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 1/75 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ IGY F + SLL +ALTH S + S +SY+RLE+LGD +L ++I + +FNH Sbjct: 1097 LKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHRIQRP 1156 Query: 68 EGELSVRFNSLVSAE 82 +G+++ +++V+A Sbjct: 1157 QGDMTKIKHAVVNAN 1171 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 19/144 (13%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97 +Y+R EFLGD IL +S LF + EG LS + +V ++ A + L ++I Sbjct: 948 NYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGRDMIVQNPRLAKAALDTGLDAYIV 1007 Query: 98 --RVSSDLRKDVCSFM--------------TSIQADVVESLIAALYLDGGIEVAGTFVDK 141 R++S RK + T + ADVVE+LI A Y+DGG A + + Sbjct: 1008 TKRLAS--RKWSAPLISEKLGRVPAKRQMSTKVLADVVEALIGAAYVDGGHSTAQACIRR 1065 Query: 142 YWKQRALKSGKFRRDAKTELQEWA 165 + + L + R A++ E A Sbjct: 1066 FLPEINLHAVDTRTAARSVAPESA 1089 >gi|78126079|dbj|BAE47000.1| ribonuclease III [Ehrlichia ruminantium] Length = 92 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 51/90 (56%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 ++A+ ++L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK Sbjct: 3 EIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKN 62 Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 A +DAKT LQEWA +K P Y Sbjct: 63 SATHMKVPPQDAKTILQEWAQSKGFPAPSY 92 >gi|115462923|ref|NP_001055061.1| Os05g0271300 [Oryza sativa Japonica Group] gi|50878449|gb|AAT85223.1| hypothetical protein [Oryza sativa Japonica Group] gi|55908895|gb|AAV67838.1| unknown protein [Oryza sativa Japonica Group] gi|113578612|dbj|BAF16975.1| Os05g0271300 [Oryza sativa Japonica Group] Length = 344 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 32/162 (19%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ + Y F + LLE+ALTH S + SY+RLEF+GD LGL S L+ + Sbjct: 34 VERLLRYQFRDGRLLEEALTHQSFADD-AVSYQRLEFVGDSALGLAFSNFLYLTNPTLGP 92 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD--VCSFMTSIQ----------- 115 G LS + +S E ++VA DL +R + R D V F+ +++ Sbjct: 93 GPLSTLRAANISTEKLARVAVRHDLYPLLRRNCP-RLDLLVGQFIETVKQEPEDDLSTVP 151 Query: 116 ------------ADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 AD+VE++ AA+Y+D + ++K WK+ Sbjct: 152 YGGSVVKAPKVLADIVEAIAAAVYVDCKFD-----LEKLWKR 188 >gi|290989569|ref|XP_002677410.1| hypothetical protein NAEGRDRAFT_48963 [Naegleria gruberi] gi|284091017|gb|EFC44666.1| hypothetical protein NAEGRDRAFT_48963 [Naegleria gruberi] Length = 1214 Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 6/125 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ IGY F N L H S+ + +YE LEF+GD +L L +S +F++F + Sbjct: 1026 LERIIGYKFKNILYAYYTLIHPSVDIGFNVNYETLEFVGDAVLDLYVSRTMFHNF-YLDQ 1084 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 E+ ++ V ++A++ + + V DL+ S +DV+E+LI A+ L Sbjct: 1085 SEMHTFRSNFVRNTALEKIAKDFRIDQLLFVKKDLKLKAKSI-----SDVMEALIGAVAL 1139 Query: 129 DGGIE 133 D ++ Sbjct: 1140 DSNLD 1144 Score = 34.7 bits (78), Expect = 9.1, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 21/125 (16%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRIL--GLLISTLLFNHFDSAK--EGEL 71 + N S L A+TH + S + +YER EF GD IL +++ +L F++ K E Sbjct: 850 GYINLSELRNAITHRT-SQNLDTNYERYEFFGDTILKYAVVLDIVLRFPFENMKFYNEEK 908 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS------------IQADVV 119 + + VS ++A++L + F + +V S ++AD++ Sbjct: 909 TAK----VSNSNLRKLAQKLSIMDFFIETQYYHHNVAGIAFSKSEQEASVKGKKVRADII 964 Query: 120 ESLIA 124 ESLI Sbjct: 965 ESLIG 969 >gi|170033786|ref|XP_001844757.1| endoribonuclease Dcr-1 [Culex quinquefasciatus] gi|167874834|gb|EDS38217.1| endoribonuclease Dcr-1 [Culex quinquefasciatus] Length = 2270 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 1/124 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS E +GY F +RS L +A+TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 2014 YSAFEDSLGYRFQDRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2073 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A D + R S DV IQ D S+ Sbjct: 2074 QHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHSISE 2133 Query: 125 ALYL 128 YL Sbjct: 2134 EYYL 2137 >gi|37266499|gb|AAQ90464.1| Dicer1 [Danio rerio] Length = 1243 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/250 (25%), Positives = 99/250 (39%), Gaps = 43/250 (17%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 E +I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 989 NFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1048 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-------------LRKDVCSFMTS 113 G L+ ++LV+ + +A + D + + S L K+ M S Sbjct: 1049 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 1108 Query: 114 -------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK---SG 151 D+ ESL A+Y+D G+ + + Y R L S Sbjct: 1109 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSA 1168 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 R EL E +P + +D + V VE+ G +G+ S R A Sbjct: 1169 NVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYRIA 1221 Query: 212 EQVAAAEVLK 221 + AA L+ Sbjct: 1222 KSAAARRALR 1231 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 652 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 709 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 710 KVSNCNLYRLGKKKGLPSRMVVS 732 >gi|72059370|ref|XP_790894.1| PREDICTED: similar to Dicer protein [Strongylocentrotus purpuratus] gi|115954873|ref|XP_001197815.1| PREDICTED: similar to Dicer protein [Strongylocentrotus purpuratus] Length = 1850 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 35/168 (20%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y EK I Y F +R+ L +A THSS +S + Y+RLEFLGD +L LI+ L++H Sbjct: 1596 YDGFEKTINYRFRDRAYLLQAFTHSSYHRNSITDCYQRLEFLGDALLDYLITRHLYDHHT 1655 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQA------- 116 + G L+ ++LV+ + +A + + + + ++++ + + +F+T + A Sbjct: 1656 NLSPGALTDLRSALVNNTIFASLAVKFNFHKYFKAYTANMFQVIDNFVTFVDAKNEALGM 1715 Query: 117 --------------------------DVVESLIAALYLDGGIEVAGTF 138 D+ ES+ A+YLD G+ + + Sbjct: 1716 DSQLKYSEMDGEQEESEDIEVPKALGDIFESVAGAIYLDSGMSLNAVW 1763 >gi|255521158|ref|ZP_05388395.1| ribonuclease III [Listeria monocytogenes FSL J1-175] Length = 147 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 3/133 (2%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 + A + + ++R+ K ++ ADV ES I ALYLD GI+ TF+++ Sbjct: 6 EFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVTFLERVIFP 65 Query: 146 RALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 + + +G + + D KT+LQE V EY + +GP H+ F V ++G +G Sbjct: 66 K-IDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKG 124 Query: 204 MDCSKRAAEQVAA 216 +K+ AEQ AA Sbjct: 125 SGRTKKQAEQSAA 137 >gi|156838880|ref|XP_001643138.1| hypothetical protein Kpol_455p11 [Vanderwaltozyma polyspora DSM 70294] gi|156113733|gb|EDO15280.1| hypothetical protein Kpol_455p11 [Vanderwaltozyma polyspora DSM 70294] Length = 558 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 70/217 (32%), Positives = 101/217 (46%), Gaps = 38/217 (17%) Query: 29 HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS------VRFNSLVSAE 82 H + + Q S ERLEFLGD LG L+S +++ F SA EG LS V N+L Sbjct: 132 HLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWS 191 Query: 83 TCSQVAREL--DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFV 139 T + L ++A+ RV D M+ AD VE+ I AL +D G E F+ Sbjct: 192 TKLNFTKRLQGNIATPTRVVKDK-------MSKRYADCVEAYIGALVIDRFGTE----FL 240 Query: 140 D-KYW-----KQRALKSGK------FRRDAKTELQEWAH-AKFGVTPEYKVTFRSGPDHD 186 D K W +++ KS + ++AK EL E K G +K+ +R + Sbjct: 241 DIKEWLEELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLG----HKLHYRKLTEM- 295 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P F V V+I + + S R AE AA +VL+ + Sbjct: 296 PPFRVEVKIGDILLDEAEGNSIREAEHRAAMKVLEND 332 >gi|168177328|pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 15 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLITKHLYEDPR 74 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110 G L+ ++LV+ + +A + D + + VS +L + F Sbjct: 75 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEXQGX 134 Query: 111 ------------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 + D+ ESL A+Y D G + + Y + L Sbjct: 135 DSELRRSEEDEEKEEDIEVPKAXGDIFESLAGAIYXDSGXSLEVVWQVYYPXXQPLIEKF 194 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 195 SANVPRSPVRELLEXEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 247 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 248 IAKSAAARRALR 259 >gi|238814324|ref|NP_001154925.1| endoribonuclease Dicer [Danio rerio] gi|229485378|sp|Q6TV19|DICER_DANRE RecName: Full=Endoribonuclease Dicer Length = 1865 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/250 (25%), Positives = 99/250 (39%), Gaps = 43/250 (17%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 E +I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1611 NFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1670 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFMTS 113 G L+ ++LV+ + +A + D + + S L K+ M S Sbjct: 1671 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 1730 Query: 114 -------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK---SG 151 D+ ESL A+Y+D G+ + + Y R L S Sbjct: 1731 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSA 1790 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 R EL E +P + +D + V VE+ G +G+ S R A Sbjct: 1791 NVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYRIA 1843 Query: 212 EQVAAAEVLK 221 + AA L+ Sbjct: 1844 KSAAARRALR 1853 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1274 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1331 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1332 KVSNCNLYRLGKKKGLPSRMVVS 1354 >gi|166240125|ref|XP_647462.2| hypothetical protein DDB_G0268410 [Dictyostelium discoideum AX4] gi|165988755|gb|EAL73658.2| hypothetical protein DDB_G0268410 [Dictyostelium discoideum AX4] Length = 1385 Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 7/136 (5%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG ++ SLLE+AL HS +SY+RLE++GD +L +S L+ F A+EG+L+ Sbjct: 1222 IGVHISHSSLLEEALCFPYSFHSASKSYQRLEYVGDAVLDFFVSDFLYATFPLAQEGQLT 1281 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-- 130 + LV S ++R+L L VS +R + D +ES I ++D Sbjct: 1282 DYRSRLVRNSNLSSISRKLCLPP--TVSKGIRD---TLPIKKLGDYLESFIGCCFVDTTQ 1336 Query: 131 GIEVAGTFVDKYWKQR 146 E + V KY R Sbjct: 1337 SFEYTKSLVYKYLDLR 1352 Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 13/119 (10%) Query: 18 ANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 + +++ ++ LT I YQ +RLEFLGD +L L+ + LF + EG LS Sbjct: 1069 STKTIPKRTLTQLGIFGKYQPYLGDNQRLEFLGDSVLKLVSTIYLFFKYPKMSEGFLSQT 1128 Query: 75 FNSLVSAETCSQVARELDLASFIRVSS--DLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + + V++ L L +R ++ + RK QADV+E+LI A+Y+D G Sbjct: 1129 RSDFTKNDHLLDVSKRLGLEEILRFTTEEEFRKP--------QADVIEALIGAVYIDRG 1179 >gi|156044530|ref|XP_001588821.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980] gi|154694757|gb|EDN94495.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1515 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 18/135 (13%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 ++R L++ A+TH+S +S +Y+RLEFLGD IL L S L + + EG LS + Sbjct: 1013 ISDRGLVQTAITHAS--YSLTSNYQRLEFLGDSILKLCTSVQLISEYPLWPEGYLSAMKD 1070 Query: 77 SLVSAETCSQVARELDLASFI-------------RVSSDLR---KDVCSFMTSIQADVVE 120 +VS S+ A EL L +I V L+ + + + +DVVE Sbjct: 1071 RIVSNSRSSRAAVELGLDEYIITKKFTGSKWRPMYVEDYLKTTEQKSRQMSSKVLSDVVE 1130 Query: 121 SLIAALYLDGGIEVA 135 +LI A +DGGI A Sbjct: 1131 ALIGACMVDGGIPKA 1145 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ + Y F +SLL +A+TH S + Q S ERLEFLGD IL +I T ++++ Sbjct: 1185 IEQILAYTFTKKSLLVEAMTHPSYINGTQ-SLERLEFLGDAILDNIIVTAMWSYETELSH 1243 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI 97 ++ + ++LV+A+ + + E+ + ++ Sbjct: 1244 FQMHLLRSALVNADFLAFLCMEMSIEQYV 1272 >gi|242215871|ref|XP_002473747.1| predicted protein [Postia placenta Mad-698-R] gi|220727142|gb|EED81071.1| predicted protein [Postia placenta Mad-698-R] Length = 1725 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 26/189 (13%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +SAL ++ L++ +GY F + LL +A+TH S + SY+RLEFLGD ++ L + L+ Sbjct: 1112 VSAL-FTLLQESLGYRFRSGRLLLEAMTHPSFNSFETSSYQRLEFLGDAVVDLAVMRYLY 1170 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSS-DLRKDVCSFMTSIQ--- 115 N F A G+LS + V A + + VA + L L + V++ +L + +++ ++ Sbjct: 1171 NKFPQATSGQLSWARSRAVCAPSLASVAVKRLGLHKLLLVNNVELSIAINNYVPILEELS 1230 Query: 116 -----------------ADVVESLIAALYLDG--GIEVAGTFVDKYWKQ-RALKSGKFRR 155 +DV+ES++ A+ +D E+A + + + S R Sbjct: 1231 NEELIHNAWKQDPPKAISDVMESVLGAVLVDSDYNWEIACSVSEMVMGDLLVVLSPNLPR 1290 Query: 156 DAKTELQEW 164 D +EL W Sbjct: 1291 DPISELMIW 1299 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 2/80 (2%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL +ALT S + + +RLE LGD +L L LFN F EG+L + VS Sbjct: 950 LLIQALTIPSANAGFNN--QRLETLGDSVLKLTTVVHLFNRFPFRHEGQLDTLRRNSVSN 1007 Query: 82 ETCSQVARELDLASFIRVSS 101 T A+E+ L ++ S Sbjct: 1008 RTLLARAKEVGLEEYLSCES 1027 >gi|215694849|dbj|BAG90040.1| unnamed protein product [Oryza sativa Japonica Group] Length = 1058 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 19/145 (13%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ IGY F ++ LL +A H S S Y+RLEFLGD +L +I++ L++ + K Sbjct: 618 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKP 677 Query: 69 GELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ------------ 115 G+++ + V ++ + A E + I+ S+ L + F ++ Sbjct: 678 GQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 737 Query: 116 ------ADVVESLIAALYLDGGIEV 134 D+VES I A+ LD G + Sbjct: 738 ACPKALGDIVESCIGAVLLDSGFNL 762 Score = 35.4 bits (80), Expect = 5.4, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 9/75 (12%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPAQGMDC----- 206 + A++ L E A + PE+K+ GP H +FT VVVEI G A A ++C Sbjct: 968 HKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKG-ASATLLECHSDGK 1026 Query: 207 -SKRAAEQVAAAEVL 220 K+AA++ AA L Sbjct: 1027 LQKKAAQEHAAQGAL 1041 >gi|219558950|ref|ZP_03538026.1| ribonuclease III [Mycobacterium tuberculosis T17] gi|289571114|ref|ZP_06451341.1| ribonuclease III rnc [Mycobacterium tuberculosis T17] gi|289544868|gb|EFD48516.1| ribonuclease III rnc [Mycobacterium tuberculosis T17] Length = 139 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 5/117 (4%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S ++ + ERLEFLGD +LGL I+ LF+ EG+L+ S+V Sbjct: 20 LLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVV 79 Query: 80 SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + + + VAR L L + + + +SI AD +ESL+ A+YL G+E Sbjct: 80 NTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGME 136 >gi|115459356|ref|NP_001053278.1| Os04g0509300 [Oryza sativa Japonica Group] gi|113564849|dbj|BAF15192.1| Os04g0509300 [Oryza sativa Japonica Group] Length = 1090 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 44/245 (17%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ IGY F ++ LL +A H S S Y+RLEFLGD +L +I++ L++ + K Sbjct: 650 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKP 709 Query: 69 GELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ------------ 115 G+++ + V ++ + A E + I+ S+ L + F ++ Sbjct: 710 GQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 769 Query: 116 ------ADVVESLIAALYLDGGIEVAGTFVDKYWK------QRALKSGKFRRDAKTELQE 163 D+VES I A+ LD G ++ WK + L + EL+E Sbjct: 770 ACPKALGDIVESCIGAVLLDSGFN-----LNYVWKVMLMLLKPVLTFANMHTNPMRELRE 824 Query: 164 WAHA---KFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAA 217 + G+ K D + V VE+ S + + + +AA + AA Sbjct: 825 LCQCHGFELGLPKPMKA--------DGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQ 876 Query: 218 EVLKR 222 E L + Sbjct: 877 ETLSK 881 Score = 35.4 bits (80), Expect = 5.4, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 9/75 (12%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPAQGMDC----- 206 + A++ L E A + PE+K+ GP H +FT VVVEI G A A ++C Sbjct: 1000 HKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKG-ASATLLECHSDGK 1058 Query: 207 -SKRAAEQVAAAEVL 220 K+AA++ AA L Sbjct: 1059 LQKKAAQEHAAQGAL 1073 >gi|218195189|gb|EEC77616.1| hypothetical protein OsI_16596 [Oryza sativa Indica Group] Length = 1576 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 44/245 (17%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ IGY F ++ LL +A H S S Y+RLEFLGD +L +I++ L++ + K Sbjct: 1136 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKP 1195 Query: 69 GELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ------------ 115 G+++ + V ++ + A E + I+ S+ L + F ++ Sbjct: 1196 GQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 1255 Query: 116 ------ADVVESLIAALYLDGGIEVAGTFVDKYWK------QRALKSGKFRRDAKTELQE 163 D+VES I A+ LD G ++ WK + L + EL+E Sbjct: 1256 ACPKALGDIVESCIGAVLLDSGFN-----LNYVWKVMLMLLKPVLTFANMHTNPMRELRE 1310 Query: 164 WAHA---KFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAA 217 + G+ K D + V VE+ S + + + +AA + AA Sbjct: 1311 LCQCHGFELGLPKPMKA--------DGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQ 1362 Query: 218 EVLKR 222 E L + Sbjct: 1363 ETLSK 1367 Score = 35.8 bits (81), Expect = 4.2, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 9/75 (12%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPAQGMDC----- 206 + A++ L E A + PE+K+ GP H +FT VVVEI G A A ++C Sbjct: 1486 HKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKG-ASATLLECHSDGK 1544 Query: 207 -SKRAAEQVAAAEVL 220 K+AA++ AA L Sbjct: 1545 LQKKAAQEHAAQGAL 1559 >gi|157279689|dbj|BAF80150.1| SHOOT ORGANIZATION1 [Oryza sativa Japonica Group] Length = 1631 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 44/245 (17%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ IGY F ++ LL +A H S S Y+RLEFLGD +L +I++ L++ + K Sbjct: 1191 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKP 1250 Query: 69 GELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ------------ 115 G+++ + V ++ + A E + I+ S+ L + F ++ Sbjct: 1251 GQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 1310 Query: 116 ------ADVVESLIAALYLDGGIEVAGTFVDKYWK------QRALKSGKFRRDAKTELQE 163 D+VES I A+ LD G ++ WK + L + EL+E Sbjct: 1311 ACPKALGDIVESCIGAVLLDSGFN-----LNYVWKVMLMLLKPVLTFANMHTNPMRELRE 1365 Query: 164 WAHA---KFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAA 217 + G+ K D + V VE+ S + + + +AA + AA Sbjct: 1366 LCQCHGFELGLPKPMKA--------DGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQ 1417 Query: 218 EVLKR 222 E L + Sbjct: 1418 ETLSK 1422 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 9/75 (12%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPAQGMDC----- 206 + A++ L E A + PE+K+ GP H +FT VVVEI G A A ++C Sbjct: 1541 HKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKG-ASATLLECHSDGK 1599 Query: 207 -SKRAAEQVAAAEVL 220 K+AA++ AA L Sbjct: 1600 LQKKAAQEHAAQGAL 1614 >gi|251764670|sp|A7LFZ6|DCL4_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 4; AltName: Full=Dicer-like protein 4; Short=OsDCL4; AltName: Full=Protein SHOOT ORGANIZATION 1 gi|152926631|gb|ABS32306.1| dicer-like protein [Oryza sativa Japonica Group] Length = 1657 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 44/245 (17%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ IGY F ++ LL +A H S S Y+RLEFLGD +L +I++ L++ + K Sbjct: 1217 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKP 1276 Query: 69 GELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ------------ 115 G+++ + V ++ + A E + I+ S+ L + F ++ Sbjct: 1277 GQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 1336 Query: 116 ------ADVVESLIAALYLDGGIEVAGTFVDKYWK------QRALKSGKFRRDAKTELQE 163 D+VES I A+ LD G ++ WK + L + EL+E Sbjct: 1337 ACPKALGDIVESCIGAVLLDSGFN-----LNYVWKVMLMLLKPVLTFANMHTNPMRELRE 1391 Query: 164 WAHA---KFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAA 217 + G+ K D + V VE+ S + + + +AA + AA Sbjct: 1392 LCQCHGFELGLPKPMKA--------DGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQ 1443 Query: 218 EVLKR 222 E L + Sbjct: 1444 ETLSK 1448 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 9/75 (12%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPAQGMDC----- 206 + A++ L E A + PE+K+ GP H +FT VVVEI G A A ++C Sbjct: 1567 HKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKG-ASATLLECHSDGK 1625 Query: 207 -SKRAAEQVAAAEVL 220 K+AA++ AA L Sbjct: 1626 LQKKAAQEHAAQGAL 1640 >gi|32488296|emb|CAE03362.1| OSJNBb0065L13.5 [Oryza sativa Japonica Group] gi|116311061|emb|CAH67991.1| OSIGBa0157K09-H0214G12.2 [Oryza sativa Indica Group] Length = 1604 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 44/245 (17%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ IGY F ++ LL +A H S S Y+RLEFLGD +L +I++ L++ + K Sbjct: 1164 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKP 1223 Query: 69 GELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ------------ 115 G+++ + V ++ + A E + I+ S+ L + F ++ Sbjct: 1224 GQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 1283 Query: 116 ------ADVVESLIAALYLDGGIEVAGTFVDKYWK------QRALKSGKFRRDAKTELQE 163 D+VES I A+ LD G ++ WK + L + EL+E Sbjct: 1284 ACPKALGDIVESCIGAVLLDSGFN-----LNYVWKVMLMLLKPVLTFANMHTNPMRELRE 1338 Query: 164 WAHA---KFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAA 217 + G+ K D + V VE+ S + + + +AA + AA Sbjct: 1339 LCQCHGFELGLPKPMKA--------DGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQ 1390 Query: 218 EVLKR 222 E L + Sbjct: 1391 ETLSK 1395 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 9/75 (12%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPAQGMDC----- 206 + A++ L E A + PE+K+ GP H +FT VVVEI G A A ++C Sbjct: 1514 HKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKG-ASATLLECHSDGK 1572 Query: 207 -SKRAAEQVAAAEVL 220 K+AA++ AA L Sbjct: 1573 LQKKAAQEHAAQGAL 1587 >gi|198457361|ref|XP_001360634.2| GA19635 [Drosophila pseudoobscura pseudoobscura] gi|198135949|gb|EAL25209.2| GA19635 [Drosophila pseudoobscura pseudoobscura] Length = 1720 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 1/113 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE+ +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1438 INHSYLEQNLGYKFRDRGYLLQALTHPSFPTNRLTGCYQELEFIGDAILDFLISAYIFEN 1497 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + + GEL+ ++LV+ T + L FI + L + S Q Sbjct: 1498 NNKLRPGELTDLRSALVNNTTLGCICVRHKLHLFILAENALLSETISKFVKFQ 1550 >gi|71893762|ref|YP_279208.1| ribonuclease III [Mycoplasma hyopneumoniae J] gi|72080732|ref|YP_287790.1| ribonuclease III [Mycoplasma hyopneumoniae 7448] gi|71851889|gb|AAZ44497.1| ribonuclease III [Mycoplasma hyopneumoniae J] gi|71913856|gb|AAZ53767.1| ribonuclease III [Mycoplasma hyopneumoniae 7448] Length = 227 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 78/145 (53%), Gaps = 12/145 (8%) Query: 25 KALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +ALTH S + + + YE LEFLGD ++ +S +++++F + +R + L S Sbjct: 26 QALTHKSYNFINPDKPHYEMLEFLGDSVINYAVSKVIYDNFYKNEGNSTQIR-SLLTSTS 84 Query: 83 TCSQVARELDLASFI---RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 + + +++ L +++ R +S++R++ ++AD+ ES AA+ LD G E F+ Sbjct: 85 SLANATKKVGLMNYVLLGRGASEIREN-----NKLKADIFESFCAAILLDQGFEKLNEFL 139 Query: 140 DKY-WKQRALKSGKFRRDAKTELQE 163 +Y +K + K +D K+ QE Sbjct: 140 SEYLYKDVNFDTEKQYKDPKSIFQE 164 >gi|331236934|ref|XP_003331125.1| hypothetical protein PGTG_13088 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309310115|gb|EFP86706.1| hypothetical protein PGTG_13088 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1465 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 27/162 (16%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 L+ LEK+IGY F + LL +ALTH S + YER E+LGD ++ + I + F Sbjct: 1099 LKCQALEKKIGYVFKEKLLLVQALTHRSANSFMTNCYEREEWLGDAVIDMWIVEHAYKRF 1158 Query: 64 DSAKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSSDLRKDVCS------------- 109 D A EL++ +VS + +A ++L L I +S+ + C+ Sbjct: 1159 DHATAEELTLARAKVVSNGSLGFLALKKLGLQEIIMHASENFEQACTEAIEAIKPFAKIE 1218 Query: 110 --FMT-----------SIQADVVESLIAALYLDGGIEVAGTF 138 F T I DV+E+++ A+++D G + + Sbjct: 1219 EYFSTIDNLFVVFDPPKILNDVLEAIVGAVFIDSGFNLHTAY 1260 >gi|294611997|gb|ADF27743.1| ribonuclease III [Ehrlichia ruminantium] Length = 92 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 50/90 (55%) Query: 87 VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146 +A+ ++L FI +S R + + + +E+LI A+YLDGG++ A F+ +WK Sbjct: 3 IAQSINLGIFIIMSDGERSCGGANNCNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNS 62 Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 A +DAKT LQEWA +K P Y+ Sbjct: 63 ATHMKVPPQDAKTILQEWAQSKGFPAPSYQ 92 >gi|312601347|gb|ADQ90602.1| Ribonuclease III [Mycoplasma hyopneumoniae 168] Length = 227 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 78/145 (53%), Gaps = 12/145 (8%) Query: 25 KALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +ALTH S + + + YE LEFLGD ++ +S +++++F + +R + L S Sbjct: 26 QALTHKSYNFINPDKPHYEMLEFLGDSVINYAVSKVIYDNFYKNEGNSTQIR-SLLTSTS 84 Query: 83 TCSQVARELDLASFI---RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 + + +++ L +++ R +S++R++ ++AD+ ES AA+ LD G E F+ Sbjct: 85 SLANATKKVGLMNYVLLGRGASEIREN-----NKLKADIFESFCAAILLDQGFEKLNEFL 139 Query: 140 DKY-WKQRALKSGKFRRDAKTELQE 163 +Y +K + K +D K+ QE Sbjct: 140 SEYLYKDVNFDTEKQYKDPKSIFQE 164 >gi|229495315|ref|ZP_04389050.1| ribonuclease III [Porphyromonas endodontalis ATCC 35406] gi|229317758|gb|EEN83656.1| ribonuclease III [Porphyromonas endodontalis ATCC 35406] Length = 298 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 58/236 (24%), Positives = 104/236 (44%), Gaps = 29/236 (12%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS--------------YQESYERLEFLGDRIL 51 + TLE+ +G+A ++ AL S + S ++ +RLEFLGD I+ Sbjct: 25 WKTLEQILGFAIRDKEYYRLALIDPSTTASGNGGKRAAGRSKMTSNDNNDRLEFLGDSII 84 Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD--LRKDVCS 109 G ++S L+ + ++ G LS + +VS + +A+ + + I+ SS+ L KD Sbjct: 85 GAVVSETLYRTYPNSPVGALSEQKAKIVSRKIGDTIAKRMGIDGLIQHSSENFLAKDA-- 142 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWA 165 + +E+++ A+YLD G + A FV+ +++ + K +L EW Sbjct: 143 -----PGNALEAIVGAIYLDRGFDFAHQFVNHKMLGIYREIRETQPDLGTNFKNKLIEWG 197 Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K T E+ + + P F V I +K+ +EQ AA L+ Sbjct: 198 -LKHKCTVEFCLIAHA-PGPRGYFVSQVFIDNQPMGHSKGSTKKGSEQGAAKLALE 251 >gi|148985143|ref|ZP_01818382.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71] gi|147922588|gb|EDK73706.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71] Length = 153 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 3/147 (2%) Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 +V E+ + AR+ FI++ K +I D E+ + AL LD + Sbjct: 2 IVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAFLGALLLDKDVAKVKE 61 Query: 138 FVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 F+ + + +++G+F D KT LQE V Y+V +GP HD F V V + Sbjct: 62 FIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISETGPAHDKVFDVEVLV 120 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G + QG SK+ AEQ AA +++ Sbjct: 121 EGKSIGQGQGRSKKLAEQEAAKNAVEK 147 >gi|302901921|ref|XP_003048541.1| hypothetical protein NECHADRAFT_95770 [Nectria haematococca mpVI 77-13-4] gi|256729474|gb|EEU42828.1| hypothetical protein NECHADRAFT_95770 [Nectria haematococca mpVI 77-13-4] Length = 1381 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 4/99 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE+ IGY+F +SLL +A+TH S + ++Q SYE+LEFLGD +L +I T +FN Sbjct: 1095 LEELIGYSFRKKSLLIEAVTHGSYAGDTHQRSYEQLEFLGDAVLDYIIVTKVFNVKPPLP 1154 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 +L + ++V+ E + V E L RV +D+ D Sbjct: 1155 HSDLHLIKTAMVNGEFLAFVNLEHRLR---RVETDVNAD 1190 >gi|332020119|gb|EGI60563.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior] Length = 1979 Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 67/254 (26%), Positives = 100/254 (39%), Gaps = 45/254 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y LEK IGY F + S L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1721 YEELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 1780 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ--------- 115 G L+ ++LV+ + +A + R S V + IQ Sbjct: 1781 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENGHSISE 1840 Query: 116 ----------------------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 DV ESL A+YLD G+ + + Y ++ Sbjct: 1841 EYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEIEQFS 1900 Query: 154 RRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K+ ++E AKFG PE R R V V++ G +G+ + Sbjct: 1901 TNVPKSPIRELLELEPETAKFG-RPEKLADGR-------RVRVTVDVFGKGSFKGIGRNY 1952 Query: 209 RAAEQVAAAEVLKR 222 R A+ AA LK+ Sbjct: 1953 RIAKCTAAKCALKK 1966 Score = 36.6 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 G++ + SL+ +ALT S+ + + ERLE +GD L I+T L+ +D+ EG+LS Sbjct: 1437 GHSGPSPSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLS 1493 >gi|307190121|gb|EFN74275.1| Endoribonuclease Dcr-1 [Camponotus floridanus] Length = 1976 Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 67/254 (26%), Positives = 100/254 (39%), Gaps = 45/254 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y LEK IGY F + S L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1717 YDELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 1776 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ--------- 115 G L+ ++LV+ + +A + R S V + IQ Sbjct: 1777 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENGHSISE 1836 Query: 116 ----------------------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 DV ESL A+YLD G+ + + Y ++ Sbjct: 1837 EYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEIEQFS 1896 Query: 154 RRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K+ ++E AKFG PE R R V V++ G +G+ + Sbjct: 1897 TNVPKSPIRELLELEPETAKFG-RPEKLADGR-------RVRVTVDVFGKGSFKGIGRNY 1948 Query: 209 RAAEQVAAAEVLKR 222 R A+ AA LK+ Sbjct: 1949 RIAKCTAAKCALKK 1962 >gi|148907962|gb|ABR17101.1| unknown [Picea sitchensis] Length = 685 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 27/158 (17%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ +GY F+ + LL +A H S + Y+RLEFLGD +L +I++ L++ + K Sbjct: 225 LERLLGYNFSYKGLLLEAFAHPSFNEHNGGCYQRLEFLGDAVLDYIITSYLYSVYPDMKP 284 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQA----------- 116 G L+ + V+ E+ + VA L ++ SD L V ++ ++A Sbjct: 285 GYLTDMRSMTVNNESFACVAVRHGLYMYLIQKSDSLSSAVTKYVDFMKALFTADRDSCDE 344 Query: 117 ----------DVVESLIAALYLDGGIEVAGTFVDKYWK 144 D+VES AL +D G + +D WK Sbjct: 345 PEPKCPKVLGDIVESFAGALVIDTGFD-----LDCVWK 377 >gi|113474882|ref|YP_720943.1| RNAse III [Trichodesmium erythraeum IMS101] gi|110165930|gb|ABG50470.1| RNAse III [Trichodesmium erythraeum IMS101] Length = 250 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 84/167 (50%), Gaps = 12/167 (7%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 A +LL+ ALTHS++S ++ E+LEF GD ++ L+ + LL ++ + GE + Sbjct: 25 ALIKWNLLDLALTHSTVSSTHNN--EKLEFFGDAVVRLVAAQLLLENYPNCSVGEFTAIR 82 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEV 134 + LVS + +Q+A + + ++ VS D + AD E+++ ALYL +E+ Sbjct: 83 SILVSDRSLAQIADKYGWSRYLLVSKSAAGDKVGRERRL-ADSFEAVLGALYLSTNNLEL 141 Query: 135 AGTFVDKYWKQRALKSGKFRRDA-----KTELQEWAHAKFGVTPEYK 176 ++D ++++ + R+D K LQE + P Y+ Sbjct: 142 IRPWLDSHFERLI---AEIRKDPACHSYKAALQELTQGYYKTLPNYQ 185 >gi|156554976|ref|XP_001602524.1| PREDICTED: similar to dicer-1 [Nasonia vitripennis] Length = 1563 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 39/204 (19%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSA 66 T+E+R+GY F NR+ L +A TH S + Q SY+RLEFLGD +L L++ ++ + Sbjct: 1362 TMEERLGYKFRNRAFLLQAFTHPSYMPNRQTASYQRLEFLGDAVLDFLLTIHIYETCGNL 1421 Query: 67 KEGELSVRFNSLVSAET--CSQVARELDLA-------------SFIRVSSDLRKDV---- 107 GEL+ ++LV+ T C V L A F++ + + Sbjct: 1422 SPGELTDLRSALVNNITFACLAVRYGLHTALLALAPKLFDLIDKFVKFQENRNYKIDDEL 1481 Query: 108 ---------CSF-----MTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALKSG 151 C+ + + D+ ES+I A++LD G +EV + K Sbjct: 1482 LWVLLEEEECNMAEHVDVPKVLGDIYESVIGAIFLDSGKNLEVVWQVIYNLMKNEI---D 1538 Query: 152 KFRRDAKTELQEWAHAKFGVTPEY 175 F ++ + H G P++ Sbjct: 1539 LFSKNVPKQPIRVIHETQGANPKF 1562 >gi|158706443|sp|Q0CEI2|DCL2_ASPTN RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl2; Includes: RecName: Full=ATP-dependent helicase dcl2 Length = 1377 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 50/76 (65%), Gaps = 1/76 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +L++ +GY F N +LL +ALTH S S + +SY+RLEFLGD +L +++ + +H Sbjct: 1092 SLKQHLGYTFVNEALLVEALTHPSCRSDASTQSYQRLEFLGDAVLDMVVVHAMAHHAVEC 1151 Query: 67 KEGELSVRFNSLVSAE 82 +GE+++ ++L +A Sbjct: 1152 PQGEMTMIKHALTNAN 1167 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%) Query: 40 YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 Y+R EF GD +L +S L+ + EG LS + +V ++ A ++ L +FI Sbjct: 950 YQRYEFFGDSVLKFTVSCQLYMQHPNWPEGYLSEGRDEIVQNNRLARAALDVGLDAFILT 1009 Query: 100 SSDLRKDVCSFMTS---------------IQADVVESLIAALYLDGGIEVAGTFV 139 + + + S + ADVVESLI A Y+DGG A T + Sbjct: 1010 RRFTPRKWTAPLISEKAVEVAGKRPLSSKVLADVVESLIGAAYMDGGQAKAHTCI 1064 >gi|168027292|ref|XP_001766164.1| dsRNA-specific nuclease dicer and related ribonuclease [Physcomitrella patens subsp. patens] gi|162682596|gb|EDQ69013.1| dsRNA-specific nuclease dicer and related ribonuclease [Physcomitrella patens subsp. patens] Length = 1460 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 29/159 (18%) Query: 9 LEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 EKRIGY F N+ L +ALTH S++ Y+RLEFLGD +L L++ LF ++ Sbjct: 1227 FEKRIGYTFKNKYLPLEALTHFSNMVGDQIRCYQRLEFLGDAVLDFLLTRHLFTSHPTST 1286 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQA---------- 116 G L+ + V+ E ++VA + L ++R S L + F+ S +A Sbjct: 1287 PGLLTSLRTASVNNERFARVAVKHRLHCYLRHGSGRLLHQIEEFVKSFEAADDDQKNSSF 1346 Query: 117 ------------DVVESLIAALYLDGGIEVAGTFVDKYW 143 D+VES+ A+ +D + +DK W Sbjct: 1347 GLNGLEAPKVLGDLVESIAGAILVDTCFD-----LDKVW 1380 >gi|328716579|ref|XP_001944314.2| PREDICTED: endoribonuclease Dcr-1-like isoform 1 [Acyrthosiphon pisum] Length = 1609 Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 68/250 (27%), Positives = 107/250 (42%), Gaps = 49/250 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + E+ +GY F +RS L +A+TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1357 FESFEQHLGYHFQDRSYLLQAMTHASYYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 1416 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ-------- 115 G L+ ++LV+ + +A + + +S L VC F+T IQ Sbjct: 1417 QHSPGALTDLRSALVNNTIFASLAVRNGFHKYFKHLSPGLSDVVCRFVT-IQEENGHTID 1475 Query: 116 -----------------------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 DV ES+ A+YLD + + T Y K + + Sbjct: 1476 EEFYFLGEDDCEEAEDVEVPKALGDVFESVAGAIYLDSNMSL-DTVWKVYHKIMENEMEQ 1534 Query: 153 FRRDA-KTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 F ++ K+ ++E AKF PE R R VVVEI G +G+ Sbjct: 1535 FSKNVPKSPIRELLELEPETAKFS-KPEKLADGR-------RVRVVVEIFGKGEFKGIGR 1586 Query: 207 SKRAAEQVAA 216 + R A+ AA Sbjct: 1587 NYRIAKCTAA 1596 >gi|213405195|ref|XP_002173369.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces japonicus yFS275] gi|212001416|gb|EEB07076.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces japonicus yFS275] Length = 325 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 19/193 (9%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY-ERLEFLGDRILGLLISTLL 59 + +R LE+++ F ++S + H + + ERLEFLGD +L +++ ++ Sbjct: 99 LPIIRQKKLEEQV---FTHKSRANELFPHCLDARKLLSKHNERLEFLGDDVLEGIVTKII 155 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F +A EGELS +LV + S+ A L +++ K T + ADV Sbjct: 156 YERFPNANEGELSKLRATLVGNDMVSKFATLYGLHEKLQLGLCGEKSQLRKCTKVVADVF 215 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQ------------EW 164 E+ + ALYLD I+ A +V + + ++ + AK ELQ Sbjct: 216 EAYLGALYLDNQIDAAFEWVKQLIEPELVRFKMEPPINKLAKAELQRRIGKAGGKVEYRC 275 Query: 165 AHAKFGVTPEYKV 177 K G EYKV Sbjct: 276 IEKKMGQREEYKV 288 >gi|195150547|ref|XP_002016212.1| GL10619 [Drosophila persimilis] gi|194110059|gb|EDW32102.1| GL10619 [Drosophila persimilis] Length = 1720 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 1/113 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE+ +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1438 INHSYLEQNLGYKFRDRGYLLQALTHPSFPTNRLTGCYQELEFIGDAILDFLISAYIFEN 1497 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + GEL+ ++LV+ T + L FI + L + S Q Sbjct: 1498 NTKLRPGELTDLRSALVNNTTLGCICVRHKLHLFILAENALLSETISKFVKFQ 1550 >gi|159481710|ref|XP_001698921.1| dicer-like protein [Chlamydomonas reinhardtii] gi|158273413|gb|EDO99203.1| dicer-like protein [Chlamydomonas reinhardtii] Length = 5684 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 8/97 (8%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64 LE +GY F N L +ALTH +SH Y+RLEFLGD +LGL++S +F+ Sbjct: 3493 LEALLGYRFRNPDLCVQALTH--VSHPRAAGCGGGYQRLEFLGDAVLGLVVSFWVFSAGG 3550 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101 SA+ +S R LVS ++ A L L +R S Sbjct: 3551 SAE--AMSTRRRDLVSNGPLAEAAARLGLQRHLRAGS 3585 >gi|298711900|emb|CBJ48587.1| dicer-like 3 [Ectocarpus siliculosus] Length = 1557 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 32/185 (17%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHS-------YQESYERLEFLGDRILGLLISTLLF- 60 LEKR+GY F L +A+TH S + + + Y+RLEFLGD +LG +++ L+ Sbjct: 1324 LEKRLGYTFRYPWLCMQAITHPSWTINDIPPGTVPAQDYQRLEFLGDAVLGWMVTAHLYF 1383 Query: 61 --NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---- 114 + F A+ + V +S V + +A LD+ +R S + + +F+ + Sbjct: 1384 ASSAFTPAELTRIKVT-SSCVCNASLWVIALRLDVHHVLRASPKILGHIHAFIENNGVSG 1442 Query: 115 -------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 ADV+E+LI A+++D + + + L+ R +T + WA Sbjct: 1443 TGTAPKHPADVLEALIGAVFIDSSCCMNASLL--------LEGAPPRMSMRT--KAWADM 1492 Query: 168 KFGVT 172 F VT Sbjct: 1493 AFAVT 1497 >gi|296424770|ref|XP_002841919.1| hypothetical protein [Tuber melanosporum Mel28] gi|295638171|emb|CAZ86110.1| unnamed protein product [Tuber melanosporum] Length = 1402 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 32/167 (19%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+ +GY F + LL ALTH S+ ++ SY+RLEFLGD +L L+ +F + A Sbjct: 1124 IEELVGYKFKHPRLLISALTHPSLPFTWDRVPSYQRLEFLGDAVLDLVCVRYMFQKYPHA 1183 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR-----VSSDLRK---DV----------C 108 L+ ++VS + VA E+ +R + +R+ D+ Sbjct: 1184 DPQWLTEHKMAMVSNKFLGMVAVEMGFHRKLRRMGSVLDHAIREYEVDIQDAKANSNGAV 1243 Query: 109 SFMTSIQA------DVVESLIAALYLDGGIE------VAGTFVDKYW 143 F TS++A DV+E+ I A+++D G + + TF+ Y+ Sbjct: 1244 DFWTSLKAPPKALPDVLEAFIGAVFVDSGFQYNIVERLVNTFILPYF 1290 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 23/132 (17%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S+ +YERLEFLGD L L S L+ + + E EL V+ L+ A+E Sbjct: 951 SLQRGMGSNYERLEFLGDCFLKLATSLSLYTAYHADDECELHVKRMVLICNRYLFTKAKE 1010 Query: 91 LDLASFIRVSSDLRKDVCSFMTSIQ-----------------------ADVVESLIAALY 127 + + +I+ + R+ M + +DV E+LI A Sbjct: 1011 MKIPEYIQTAGFSRRTWYPKMKLLMGKGTTQHNSSKEEISHRLADKSISDVCEALIGAAL 1070 Query: 128 LDGGIEVAGTFV 139 +D G++ A V Sbjct: 1071 IDKGLDGATQIV 1082 >gi|115401870|ref|XP_001216523.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114190464|gb|EAU32164.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 1635 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 50/76 (65%), Gaps = 1/76 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +L++ +GY F N +LL +ALTH S S + +SY+RLEFLGD +L +++ + +H Sbjct: 1066 SLKQHLGYTFVNEALLVEALTHPSCRSDASTQSYQRLEFLGDAVLDMVVVHAMAHHAVEC 1125 Query: 67 KEGELSVRFNSLVSAE 82 +GE+++ ++L +A Sbjct: 1126 PQGEMTMIKHALTNAN 1141 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 15/117 (12%) Query: 40 YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 Y+R EF GD +L +S L+ + EG LS + +V ++ A ++ L +FI Sbjct: 924 YQRYEFFGDSVLKFTVSCQLYMQHPNWPEGYLSEGRDEIVQNNRLARAALDVGLDAFILT 983 Query: 100 SSDLRKDVCSFMTS---------------IQADVVESLIAALYLDGGIEVAGTFVDK 141 + + + S + ADVVESLI A Y+DGG A T + + Sbjct: 984 RRFTPRKWTAPLISEKAVEVAGKRPLSSKVLADVVESLIGAAYMDGGQAKAHTCIRR 1040 >gi|224101241|ref|XP_002312197.1| dicer-like protein [Populus trichocarpa] gi|222852017|gb|EEE89564.1| dicer-like protein [Populus trichocarpa] Length = 1468 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 104/242 (42%), Gaps = 29/242 (11%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 +RY LE + Y+F + SLL +ALTH S + Y+RLEFLGD +L LI+ ++ Sbjct: 1216 VRY--LESLLNYSFNDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITLHMYKE 1273 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ------ 115 + G L+ ++ V+ + + A ++ L I S DL K + + + IQ Sbjct: 1274 YPGMSPGLLTDLRSASVNNDCYALSAVKVGLDRHILHASHDLHKHIVATVKKIQEFSLES 1333 Query: 116 --------------ADVVESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRRDAKTE 160 DV+ESL A+ +D G F + + + R E Sbjct: 1334 TFGWESETAFPKVLGDVIESLAGAILVDSGYNKEVVFESIRPLLEPLITPETLRLQPVRE 1393 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAEQVAAAEV 219 L E + +YK S + T+ VE +GL + K A+++A+ EV Sbjct: 1394 LNELCQRQHF---DYKKPIVSRNGRNASVTIEVEANGLIFKHTATVADKTTAKKLASKEV 1450 Query: 220 LK 221 LK Sbjct: 1451 LK 1452 >gi|255030397|ref|ZP_05302348.1| ribonuclease III [Listeria monocytogenes LO28] Length = 102 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 4/99 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F N LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 N + EG ++ ++V + + A + + ++R+ Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRL 101 >gi|331250710|ref|XP_003337961.1| hypothetical protein PGTG_19538 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309316951|gb|EFP93542.1| hypothetical protein PGTG_19538 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1489 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 27/162 (16%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 L+ LE++IGY F + LL +ALTH S + YER E+LGD ++ + I + F Sbjct: 1107 LKCQALEEKIGYVFKEKLLLVQALTHRSANSFMTNCYEREEWLGDAVIDMWIVEHAYKRF 1166 Query: 64 DSAKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSSDLRKDVCS------------- 109 D A EL++ +VS + +A ++L L I +S+ + C+ Sbjct: 1167 DHATAEELTLARAKVVSNGSLGFLALKKLGLQEIIMHASENFEQACTEAIEAIKPFAKIE 1226 Query: 110 --FMT-----------SIQADVVESLIAALYLDGGIEVAGTF 138 F T I DV+E+++ A+++D G + + Sbjct: 1227 EYFSTIDNLFVVFDPPKILNDVLEAIVGAVFVDSGFNLQSAY 1268 >gi|290983750|ref|XP_002674591.1| predicted protein [Naegleria gruberi] gi|284088182|gb|EFC41847.1| predicted protein [Naegleria gruberi] Length = 809 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 12/131 (9%) Query: 14 GYAFANRSLLEK-ALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHF--DSAK 67 GY F LL + A T S +H + YERLEF+GD ++ L L D +K Sbjct: 357 GYRFLKDPLLIRVAHTFPSYAHKMNFGRGHYERLEFMGDSVVNLTACVELIKSCRNDDSK 416 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 +G+ + F L++ ++ ++ A +L ++ SSD F Q++V+ES+I ALY Sbjct: 417 KGDWNAGFTVLIANDSITREAEKLQISEHFLNSSD------KFSKKAQSNVIESIIGALY 470 Query: 128 LDGGIEVAGTF 138 + GI A +F Sbjct: 471 MAEGIRGARSF 481 >gi|281211700|gb|EFA85862.1| putative RNase III [Polysphondylium pallidum PN500] Length = 1126 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 42/182 (23%) Query: 11 KRIGYAFANRSLLEKALTHSSISHS----------------YQESYERLEFLGDRILGLL 54 KR Y+ N LL + TH S S Y+ +R+EFLGD +L Sbjct: 701 KRNIYSINNERLLREVFTHPSTKRSNQTPPVNMKIYKNYKFYEGDNQRIEFLGDSVLKFC 760 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 S LF F A EG L+ + + + + ++ ++ +R+ + + D+ Sbjct: 761 TSIYLFYKFPEAMEGVLTTKRSEMTNNNYLIEICDMFEMDEVLRLPQN-KDDI----KKP 815 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 +ADVVE+L A+YL+ G+ A F+ K F+ D H+KF PE Sbjct: 816 KADVVEALFGAVYLERGMYEAFRFIMKMI---------FKID---------HSKF---PE 854 Query: 175 YK 176 YK Sbjct: 855 YK 856 Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 9/106 (8%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 SY+RLEFLGD L ++ S LF+ F + +EG LS LV ++ + + ++L+L + Sbjct: 899 SYQRLEFLGDAFLDVVTSDFLFHAFPNEQEGFLSQARALLVKNDSLACIFQQLNLKDCVD 958 Query: 99 VSSDLRKDVCS---FMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 +SS C F D+ ES++ L LD GIE FV K Sbjct: 959 LSS------CPGIVFNQKRMGDLFESVVGCLLLDQGIEKTKDFVLK 998 >gi|114600833|ref|XP_001157148.1| PREDICTED: ribonuclease III, nuclear isoform 2 [Pan troglodytes] Length = 1193 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 2/99 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101 F EG L++ +SLV+ T ++VA EL++ ++V S Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELEIKEGMQVWS 1167 Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 921 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 975 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 976 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1023 >gi|297812215|ref|XP_002873991.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297319828|gb|EFH50250.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 1693 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 19/145 (13%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE ++ Y F ++ LL +A H S + Y+RLEFLGD +L L+++ F F K Sbjct: 1287 LENQLDYNFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKP 1346 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA------------ 116 G+L+ + V+ + + VA L F+ S + T+ +A Sbjct: 1347 GQLTDLRSLSVNNKALANVAVSFSLKRFLFCESVYLHEAIEDYTNFRAASPLASGPSEGP 1406 Query: 117 -------DVVESLIAALYLDGGIEV 134 D+VES + AL+LD G + Sbjct: 1407 RCPKVLGDLVESCLGALFLDCGFNL 1431 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 33/60 (55%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S ERLE LGD L +S LF H D EGEL+ R + V+ ++A + +L +IR Sbjct: 1110 SLERLEVLGDAFLKFAVSRHLFLHHDRLDEGELTRRRSKAVNNSNLCRLAIKRNLQVYIR 1169 >gi|80979085|gb|ABB54745.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1518 >gi|80979089|gb|ABB54747.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1518 >gi|80979093|gb|ABB54749.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1518 >gi|240255863|ref|NP_680697.4| ATRTL1 (ARABIDOPSIS THALIANA RNASEIII-LIKE 1); RNA binding / ribonuclease III [Arabidopsis thaliana] gi|332658200|gb|AEE83600.1| protein RNAse II-like 1 [Arabidopsis thaliana] Length = 264 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 17/182 (9%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +LEK + Y F ++SLL KA T +S ESYE LE LGD IL + I + Sbjct: 27 MEIESLEKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFIKLY 86 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQ------- 115 G L+ V E ++VA L S++R L + + F+ +++ Sbjct: 87 PKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAMEKYPLHSN 146 Query: 116 ---------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 AD+VES I A+++D V K + + K + TEL E Sbjct: 147 GLLKVPKVLADIVESTIGAIFMDCNSTETVWKVIKPLLEPIIHLDKMKSHPMTELNEMCQ 206 Query: 167 AK 168 + Sbjct: 207 KR 208 >gi|80979091|gb|ABB54748.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1518 >gi|80979099|gb|ABB54752.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1518 >gi|80979097|gb|ABB54751.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1518 >gi|328772805|gb|EGF82843.1| hypothetical protein BATDEDRAFT_23044 [Batrachochytrium dendrobatidis JAM81] Length = 1492 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 38/189 (20%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E + Y F ++S+L +ALTHSS S S +Y+RLEFLGD +L +I+ L+ S+ Sbjct: 1223 IEAVLNYTFQDKSILWEALTHSSSSFSICGLNYQRLEFLGDAVLSFIITKYLYTQLGSSS 1282 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRV-----------------------SSDLR 104 G +S + +V + + V+ L L ++RV + ++ Sbjct: 1283 PGVISHLKSEMVCNQFLACVSIRLGLIDWLRVKKSDTVWIVDAYAQQVIEHLSQPADSIQ 1342 Query: 105 KDVCSFMTS---IQADVVESLIAALYLDG--GIE-----VAGTFVDKYWKQRALKSGKFR 154 K + MT+ I DV E+++ A+++D IE V + + +W + + Sbjct: 1343 KIFWAHMTTAPKICGDVYEAILGAIFVDSKFSIEKVDEFVLNSLIKPWWDHFS----QIV 1398 Query: 155 RDAKTELQE 163 +D K LQ Sbjct: 1399 QDGKVVLQN 1407 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 56/127 (44%), Gaps = 14/127 (11%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV-RF 75 F N L+ L SS Y SYERLE LGD L + S LF S EG L+ R Sbjct: 1048 FINIETLQTVLVASSTDLPY--SYERLEILGDSFLKIHQSLHLFALNPSQDEGWLTTSRM 1105 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKD----------VCSFMTSIQADVVESLIAA 125 + + E C + A E+ L I + RK + S I ADV E++I Sbjct: 1106 VAEQNLELCRR-ATEVGLQGLILTTRFSRKQWVPPAKGHDSMQSMPKKILADVTEAIIGG 1164 Query: 126 LYLDGGI 132 +DGGI Sbjct: 1165 CLIDGGI 1171 >gi|195124758|ref|XP_002006854.1| GI21295 [Drosophila mojavensis] gi|193911922|gb|EDW10789.1| GI21295 [Drosophila mojavensis] Length = 1728 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LEK +GY F +R+ L +ALTH S+ ++ Y+ LEF+GD IL LIS +F H Sbjct: 1438 INHQYLEKNLGYTFCDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFEH 1497 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVA 88 G+L+ ++LV+ T + + Sbjct: 1498 KTRMTPGQLTDLRSALVNNTTLACIC 1523 >gi|196229194|ref|ZP_03128059.1| dsRNA-specific ribonuclease [Chthoniobacter flavus Ellin428] gi|196226426|gb|EDY20931.1| dsRNA-specific ribonuclease [Chthoniobacter flavus Ellin428] Length = 69 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 3/64 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDS 65 LE+RI Y F N LL +ALTH S+ H Q + +RLEFLGD +L L+ + LF+ F Sbjct: 4 LEQRIKYKFRNSLLLAEALTHPSLGHETQRHHFDNQRLEFLGDAVLQLIFTEYLFDQFPR 63 Query: 66 AKEG 69 + G Sbjct: 64 LQRG 67 >gi|156553056|ref|XP_001605287.1| PREDICTED: similar to dicer-1 [Nasonia vitripennis] Length = 1917 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 1/126 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y +LE+ IGY F NRS L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1657 YDSLERSIGYTFRNRSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1716 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A + R S V IQ + S+ Sbjct: 1717 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLNTVIDRFVRIQEENGHSISE 1776 Query: 125 ALYLDG 130 YL G Sbjct: 1777 EYYLIG 1782 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 G++ + SL+ +ALT S+ + + ERLE +GD L I+T LF +++ EG+LS Sbjct: 1370 GHSGPSPSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLFCTYNNIHEGKLS 1426 >gi|313204618|ref|YP_004043275.1| ribonuclease iii [Paludibacter propionicigenes WB4] gi|312443934|gb|ADQ80290.1| ribonuclease III [Paludibacter propionicigenes WB4] Length = 277 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 18/152 (11%) Query: 26 ALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 A+ H S+S + S ERLEFLGD +L +++ +L+ + +EG L+ + +V Sbjct: 40 AVRHKSVSIPTENGRNLSNERLEFLGDAVLNSVVTDILYRRYKEEREGFLTNTRSKIVKR 99 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 ++ +++A E+ L ++V+ + + +I + +E+L+ A+YLD G + FV+ Sbjct: 100 DSLNKLALEIGLDKLVKVTKYVNAHTNN---NIYGNALEALLGAIYLDYGYKKCKKFVE- 155 Query: 142 YWKQRALKS-------GKFRRDAKTELQEWAH 166 QR KS + + K++L EW Sbjct: 156 ---QRLFKSFVNLDKVAENEVNFKSKLIEWCQ 184 >gi|242008637|ref|XP_002425109.1| dicer-1, putative [Pediculus humanus corporis] gi|212508774|gb|EEB12371.1| dicer-1, putative [Pediculus humanus corporis] Length = 471 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 61/108 (56%), Gaps = 2/108 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y+ LE+ +GY F + LL +A+TH S + + Y+RLEFLGD IL L++ + +F Sbjct: 220 YTDLEETLGYTFKRKELLLEAITHPSYVRNRLTPCYQRLEFLGDAILDFLVTVYIQENFK 279 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFM 111 G ++ ++LV+ T + ++ + D + + SS L K + +F+ Sbjct: 280 DMNPGLITDIRSALVNNSTLACLSVKYDFHKYLLYTSSPLNKCIENFV 327 >gi|6714410|gb|AAF26098.1|AC012328_1 unknown protein [Arabidopsis thaliana] Length = 2042 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 22/145 (15%) Query: 9 LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E + Y+F ++SLL +ALTH S + Y+RLEFLGD +L LI+ L++ + Sbjct: 1806 MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLS 1865 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----DLRKDVCSF-MTSIQA----- 116 G L+ ++ V+ E + VA + +L I +S + + V F +S+Q+ Sbjct: 1866 PGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWE 1925 Query: 117 ----------DVVESLIAALYLDGG 131 DV+ESL A+++D G Sbjct: 1926 SDISFPKVLGDVIESLAGAIFVDSG 1950 >gi|289425710|ref|ZP_06427468.1| RNase3 domain protein [Propionibacterium acnes SK187] gi|289153883|gb|EFD02586.1| RNase3 domain protein [Propionibacterium acnes SK187] Length = 146 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 2/107 (1%) Query: 23 LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 L ALTH S ++ + + ERLEFLGD +LGL +++ L+ + S E ++S S+VS Sbjct: 38 LRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVASQLYITYPSRPESDISKMRASIVS 97 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 S +ARE++L I + + SI AD E++ A+Y Sbjct: 98 RYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTEAIFGAIY 144 >gi|261749614|ref|YP_003257300.1| ribonuclease III [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497707|gb|ACX84157.1| ribonuclease III [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 251 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 106/232 (45%), Gaps = 26/232 (11%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHS------SISHSYQESYERLEFLGDRILGLLI 55 +++ S L+K +G+ N LL+ +S ++ +Y ++RLEFLGD +L +I Sbjct: 14 NSILVSRLKKILGFCPKNLKLLKDVFIYSFSTKRKTLDKNYFLDFQRLEFLGDAVLNSII 73 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSFMTSI 114 S L KEGEL+ + +V + ++++++L LA F + + + + +I Sbjct: 74 SHFLCEKLPEKKEGELTQVRSKIVCRKNLNEISKKLTLAEVFFQNNQPIISE------NI 127 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWAHA-KFG 170 + +E+LI +YL+ G + FV K + + + + K + EW+ KF Sbjct: 128 LGNTLEALIGFIYLEIGYQGCKNFVYKKILHYHVNITQLQNEISSYKVWVIEWSQKNKFI 187 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLA------PAQGMDCSKRAAEQVAA 216 + TFR + V+ S +G SK+ +E++AA Sbjct: 188 INFN---TFRETKEEIENKHVITYFSEFTISRCGIKTEGRGPSKKKSEEMAA 236 >gi|17552834|ref|NP_498761.1| DiCer Related family member (dcr-1) [Caenorhabditis elegans] gi|21431882|sp|P34529|DCR1_CAEEL RecName: Full=Endoribonuclease dcr-1 gi|15145374|gb|AAA28101.2| Dicer related protein 1, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 1845 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/258 (25%), Positives = 107/258 (41%), Gaps = 46/258 (17%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 +++ LE++IGY F R+ L +A TH+S I++ Y+RLEFLGD +L +I+ LF Sbjct: 1576 FQFTQLEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFED 1635 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRK------DVCS---FMT 112 G L+ ++LV+ + +A + + FI + L +CS F T Sbjct: 1636 SRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFVKLCSERNFDT 1695 Query: 113 SIQA--------------------------DVVESLIAALYLDGGIEVAGTFVDKYWKQR 146 + A D+ ES+ A+YLD G + T+ + R Sbjct: 1696 NFNAEMYMVTTEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMR 1755 Query: 147 A---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 L R EL E+ +K + ++ SG + V VE+ G Sbjct: 1756 GTIELCCANPPRSPIRELMEFEQSKVRFSKMERI-LESG-----KVRVTVEVVNNMRFTG 1809 Query: 204 MDCSKRAAEQVAAAEVLK 221 M + R A+ AA LK Sbjct: 1810 MGRNYRIAKATAAKRALK 1827 >gi|149732822|ref|XP_001500801.1| PREDICTED: ribonuclease type III, nuclear isoform 3 [Equus caballus] Length = 1192 Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 921 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 975 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 976 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1023 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 2/91 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDL 93 F EG L++ +SLV+ T ++VA EL + Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGM 1159 >gi|145338056|ref|NP_566199.4| DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding / ribonuclease III [Arabidopsis thaliana] gi|322518659|sp|Q3EBC8|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName: Full=Dicer-like protein 2; Short=AtDCL2 gi|332640403|gb|AEE73924.1| protein dicer-like 2 [Arabidopsis thaliana] gi|332640405|gb|AEE73926.1| protein dicer-like 2 [Arabidopsis thaliana] Length = 1388 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 22/145 (15%) Query: 9 LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E + Y+F ++SLL +ALTH S + Y+RLEFLGD +L LI+ L++ + Sbjct: 1152 MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLS 1211 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----DLRKDVCSF-MTSIQA----- 116 G L+ ++ V+ E + VA + +L I +S + + V F +S+Q+ Sbjct: 1212 PGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWE 1271 Query: 117 ----------DVVESLIAALYLDGG 131 DV+ESL A+++D G Sbjct: 1272 SDISFPKVLGDVIESLAGAIFVDSG 1296 >gi|94450854|gb|ABF19797.1| dicer-like 2 spliceform 1 [Arabidopsis thaliana] Length = 1386 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 22/145 (15%) Query: 9 LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E + Y+F ++SLL +ALTH S + Y+RLEFLGD +L LI+ L++ + Sbjct: 1150 MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLS 1209 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----DLRKDVCSF-MTSIQA----- 116 G L+ ++ V+ E + VA + +L I +S + + V F +S+Q+ Sbjct: 1210 PGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWE 1269 Query: 117 ----------DVVESLIAALYLDGG 131 DV+ESL A+++D G Sbjct: 1270 SDISFPKVLGDVIESLAGAIFVDSG 1294 >gi|195023643|ref|XP_001985724.1| GH20958 [Drosophila grimshawi] gi|193901724|gb|EDW00591.1| GH20958 [Drosophila grimshawi] Length = 1713 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 1/104 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R+ L +ALTH S+ ++ Y+ LEF+GD IL LIS +F H Sbjct: 1421 INHSALEHNLGYTFRDRAYLLQALTHPSNPTNRLTGCYQELEFVGDAILDFLISAYIFEH 1480 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 G+L+ ++LV+ T + + + FI + + D Sbjct: 1481 KTRMTPGQLTDLRSALVNNTTLACICVRHRIHFFILAENAMLSD 1524 >gi|240247227|emb|CAX68236.1| dicer-1 [Blattella germanica] Length = 2271 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 69/253 (27%), Positives = 105/253 (41%), Gaps = 55/253 (21%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E+RI Y F +RS L ++LTH+S S + + Y+RLEFLGD +L LI+ L+ Sbjct: 2015 YDVFERRIRYKFRDRSYLLQSLTHASYSPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 2074 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ--------- 115 G L+ ++LV+ + +A + R S +V IQ Sbjct: 2075 QHSPGALTDLRSALVNNTIFASLAVRYGFHKYFRHLSPGLNEVVDRFVRIQEENGHTISE 2134 Query: 116 ----------------------ADVVESLIAALYLDGGIEVAGTFVDKYWK--QRALKS- 150 DV ES+ A++LD G+ +D W+ R +KS Sbjct: 2135 EYYLIEEEECEEAEDVEVPKALGDVFESVAGAIFLDSGMS-----LDAVWRVYYRMMKSE 2189 Query: 151 -GKFRRD-AKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 +F + K+ ++E AKFG PE R R V VE+ G +G Sbjct: 2190 IEQFSTNVPKSPIRELLELEPETAKFG-KPEKLADGR-------RVRVTVEVFGKGTFKG 2241 Query: 204 MDCSKRAAEQVAA 216 + + R A+ AA Sbjct: 2242 IGRNYRIAKCTAA 2254 >gi|225462996|ref|XP_002264486.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296084589|emb|CBI25610.3| unnamed protein product [Vitis vinifera] Length = 1623 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/243 (23%), Positives = 112/243 (46%), Gaps = 41/243 (16%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK +G+ F ++ LL +A+ H S + Y+RLEFLGD +L LI++ L++ + K Sbjct: 1202 LEKLLGHEFLHKGLLLQAIVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKP 1261 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQ------------ 115 G+++ + V+ ++ + VA L F+ +S L + + ++ I+ Sbjct: 1262 GQMTDLRSLSVNNKSFANVAVSRSLHEFLICDASSLSEAIKKYVDFIRTPTLDKDLHEGP 1321 Query: 116 ------ADVVESLIAALYLDGGIEVAGTFVDKYWK------QRALKSGKFRRDAKTELQE 163 D+VES + A+ LD G + ++ W R + + + ELQE Sbjct: 1322 KCPKALGDLVESCMGAILLDKGFD-----LNHAWNIMLSILDRIMSFSDLQLNPIRELQE 1376 Query: 164 WA-HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG---LAPAQGMDCSKRAAEQVAAAEV 219 H + + ++ + + G F V ++SG A + +++ A ++A+ ++ Sbjct: 1377 LCQHHNWDL--QFPTSKQGG-----TFLVEAKVSGDDICTTASATNANRKDARRIASNQL 1429 Query: 220 LKR 222 K+ Sbjct: 1430 FKK 1432 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 37/138 (26%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S ERLE LGD L + LF +D+ EGEL+ R +++V+ ++A +L +IR Sbjct: 1029 SLERLEVLGDAFLKFAVGRRLFLLYDALDEGELTRRRSNVVNNSNLFKLAVRRNLQVYIR 1088 Query: 99 -----------------------------------VSSDLRKDVCS--FMTSIQADVVES 121 ++++R C ADVVE+ Sbjct: 1089 DQSFDPGQFFALGHRCPRICEKETEMAIHSRCGKTPTTEVRCSKCHHWLHKKTIADVVEA 1148 Query: 122 LIAALYLDGGIEVAGTFV 139 L+ A +D G + A F+ Sbjct: 1149 LVGAFIVDSGFKAATVFL 1166 >gi|330802362|ref|XP_003289187.1| hypothetical protein DICPUDRAFT_79950 [Dictyostelium purpureum] gi|325080763|gb|EGC34305.1| hypothetical protein DICPUDRAFT_79950 [Dictyostelium purpureum] Length = 1059 Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 28/158 (17%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHS-----------YQESY------ERLEFL 46 +R + RI + + +L +A TH S S +++ Y +RLE+L Sbjct: 736 VRLAQFNTRI-VSLKSYKILREAFTHPSTKASNRLIPPSELPMFKDYYPYLGDNQRLEYL 794 Query: 47 GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS--DLR 104 GD +L L S LF + +KEG LS+ + + + +V++ + L +R+S+ +++ Sbjct: 795 GDSVLKLASSIYLFYKYSGSKEGALSMERANNIKNDNLIEVSKRMHLDEILRLSNSDEIK 854 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 K ADV+E+L A+ LD G E A + +Y Sbjct: 855 KP--------HADVIEALFGAISLDRGFEKAYEIIVRY 884 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 10/122 (8%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 SLLE+A + + +Y+RLEF+GD +L + + L+ F EG L+ + LV Sbjct: 924 SLLEEAFSSGT-----NVNYQRLEFVGDGVLDYITADYLYKEFPEYNEGTLTEFRSRLVR 978 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 S ++ L L I ++ + D ESL+ L LD G+E FV Sbjct: 979 NNNLSDASKRLKLPPNIT-----DEERAALPPKRLGDYFESLVGCLVLDRGVEETKQFVK 1033 Query: 141 KY 142 K+ Sbjct: 1034 KH 1035 >gi|114600831|ref|XP_001156889.1| PREDICTED: ribonuclease III, nuclear isoform 1 [Pan troglodytes] Length = 1189 Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 921 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 975 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 976 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1023 Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 2/91 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDL 93 F EG L++ +SLV+ T ++VA EL + Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGM 1159 >gi|32450506|gb|AAH54003.1| RNASEN protein [Homo sapiens] Length = 1192 Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + + Sbjct: 921 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 975 Query: 88 ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135 A++L+L F+ + D+C S + A+ E+LI A+YL+G +E A Sbjct: 976 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1023 Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 2/91 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T ++ +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDL 93 F EG L++ +SLV+ T ++VA EL + Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGM 1159 >gi|302693114|ref|XP_003036236.1| hypothetical protein SCHCODRAFT_31237 [Schizophyllum commune H4-8] gi|300109932|gb|EFJ01334.1| hypothetical protein SCHCODRAFT_31237 [Schizophyllum commune H4-8] Length = 1342 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 28/186 (15%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHF 63 +S L+ ++GY F + LL +ALTHSS + SY SYERLEFLGD ++ L + L+ F Sbjct: 1086 FSELQAKLGYTFRDGGLLCEALTHSSFASLDSYG-SYERLEFLGDAVINLAVVDYLYRKF 1144 Query: 64 DSAKEGELSVR-----FNSLVSAETC-------SQVARELDLASFIRVSSDLRKDVCSF- 110 A +LS+ N +SA + S + ++L+ I + + +D Sbjct: 1145 PDANSDQLSLPRARAVCNQALSALSVKHLQLHKSVLVNNVELSIAINKHAPILEDKPYPE 1204 Query: 111 ---------MTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALK-SGKFRRDAK 158 + +D+ ES++ A+++D G E+ V++ + + S RD Sbjct: 1205 ILVKGWKLDPPKVLSDIFESIVGAVFVDTGYDYEITAAVVEQAMEGLLVHLSPAMPRDPV 1264 Query: 159 TELQEW 164 +EL W Sbjct: 1265 SELIIW 1270 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 16/137 (11%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +G + R LL +ALT + +RLE LGD +L L + LFN + EG+L+ Sbjct: 919 LGLPYIERDLLIQALTLPCAGMPFNN--QRLETLGDAVLELSTTVHLFNKYPHRHEGQLT 976 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSS------DLRKDV-----CS---FMTSIQADV 118 +S + ARE+ L F+ + D +D C+ F D Sbjct: 977 PLRQICISNKCLLTRAREVQLERFLTSETHSLSIWDYVEDSEVPARCARRLFPRRSLQDC 1036 Query: 119 VESLIAALYLDGGIEVA 135 +E+++ A YL GGI+ A Sbjct: 1037 MEAILGASYLTGGIDTA 1053 >gi|94450856|gb|ABF19798.1| dicer-like 2 spliceform 2 [Arabidopsis thaliana] Length = 1374 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 22/145 (15%) Query: 9 LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E + Y+F ++SLL +ALTH S + Y+RLEFLGD +L LI+ L++ + Sbjct: 1138 MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLS 1197 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----DLRKDVCSF-MTSIQA----- 116 G L+ ++ V+ E + VA + +L I +S + + V F +S+Q+ Sbjct: 1198 PGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWE 1257 Query: 117 ----------DVVESLIAALYLDGG 131 DV+ESL A+++D G Sbjct: 1258 SDISFPKVLGDVIESLAGAIFVDSG 1282 >gi|145331748|ref|NP_001078101.1| DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding / ribonuclease III [Arabidopsis thaliana] gi|332640404|gb|AEE73925.1| protein dicer-like 2 [Arabidopsis thaliana] Length = 1374 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 22/145 (15%) Query: 9 LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E + Y+F ++SLL +ALTH S + Y+RLEFLGD +L LI+ L++ + Sbjct: 1138 MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLS 1197 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----DLRKDVCSF-MTSIQA----- 116 G L+ ++ V+ E + VA + +L I +S + + V F +S+Q+ Sbjct: 1198 PGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWE 1257 Query: 117 ----------DVVESLIAALYLDGG 131 DV+ESL A+++D G Sbjct: 1258 SDISFPKVLGDVIESLAGAIFVDSG 1282 >gi|328849595|gb|EGF98772.1| hypothetical protein MELLADRAFT_79606 [Melampsora larici-populina 98AG31] Length = 1540 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 31/162 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ L+ +IGY F LL +ALTH S YER E+LGD I+ L I+ + F Sbjct: 1107 HTALQHKIGYEFKQPLLLMQALTHRSADSFLTNCYEREEWLGDAIVDLWITEHCYRRFSD 1166 Query: 66 AKEGELSVRFNSLVSA-------------------------ETCSQVARELDLASFIRVS 100 + +L+ SLV+ + C R D+ SFI V Sbjct: 1167 STAAQLTFTRASLVTNASLGYLSLKKLGLHKMIQHDSRHFEKACDDALR--DIESFIEVG 1224 Query: 101 SDLRKDVCSFMT----SIQADVVESLIAALYLDGGIEVAGTF 138 S SF+ I D +E+++ A+++D G+ ++ + Sbjct: 1225 SFYDNLTNSFIVFDPPKILGDALEAIVGAIFIDCGLHLSVAY 1266 >gi|2244899|emb|CAB10321.1| UFD1 like protein [Arabidopsis thaliana] gi|7268289|emb|CAB78584.1| UFD1 like protein [Arabidopsis thaliana] Length = 778 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +LEK + Y F ++SLL KA T +S ESYE LE LGD IL + I + Sbjct: 52 MEIESLEKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFIKLY 111 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQ------- 115 G L+ V E ++VA L S++R L + + F+ +++ Sbjct: 112 PKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAMEKYPLHSN 171 Query: 116 ---------ADVVESLIAALYLD 129 AD+VES I A+++D Sbjct: 172 GLLKVPKVLADIVESTIGAIFMD 194 >gi|328947077|ref|YP_004364414.1| ribonuclease III [Treponema succinifaciens DSM 2489] gi|328447401|gb|AEB13117.1| ribonuclease III [Treponema succinifaciens DSM 2489] Length = 369 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 11/132 (8%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF--- 63 ++ I Y F N LLE+A T S S + E + E LEF GD IL ++ +++ F Sbjct: 9 VQSSINYQFKNLQLLEQAFTRKSYSEEHPELQNNEVLEFYGDEILDFFVTKMMYKRFSRI 68 Query: 64 ------DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 EGEL+ + LVS E+ ++ + + F+ + K+ S+ D Sbjct: 69 LNNELVSEKNEGELTKLKSILVSKESLARCMYNIGFSKFLYLGKSDEKNEVYKSKSVNED 128 Query: 118 VVESLIAALYLD 129 + E++I A+ D Sbjct: 129 LFEAIIGAVAAD 140 >gi|322694902|gb|EFY86720.1| abhydrolase domain-containing protein [Metarhizium acridum CQMa 102] Length = 333 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 16/142 (11%) Query: 29 HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88 H +S + SYERLE+LGD L L+ S+L++ F S G S L+ +T +Q Sbjct: 73 HPGLSDPLR-SYERLEWLGDAYLELIASSLIYQTFTSTPTGRCSQLREILIRNKTLAQYF 131 Query: 89 RELDLASFIRVSSDLRKDVCSFMTS--------IQADVVESLIAALYL---DGGIEVAGT 137 RE L S + SDL+ D+ S QAD+ E+ +AA + + G+ + Sbjct: 132 REYGLESKAHLPSDLKTDISRSRGSSSDKDIIKTQADMFEAYVAAAIISDPENGMANTAS 191 Query: 138 FVDKYW----KQRALKSGKFRR 155 ++ W K + L + K R+ Sbjct: 192 WLKSLWARTIKNQILNNEKNRK 213 >gi|283827860|gb|ADB44075.1| dicer-1 [Marsupenaeus japonicus] Length = 2482 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 106/258 (41%), Gaps = 56/258 (21%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E++IGY F +RS L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 2226 YQVFEEKIGYTFQDRSYLLQAFTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 2285 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ-------- 115 G L+ ++LV+ + +A + D + R S L + + F+ + Sbjct: 2286 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINE 2345 Query: 116 ----------------------ADVVESLIAALYLDGGIEVAGTFVDKYW--------KQ 145 DV ES+ A++LD +G+ +D W ++ Sbjct: 2346 EYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLD-----SGSSLDAVWSVYYTMMCRE 2400 Query: 146 RALKSGKFRRDAKTEL--QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 SG + EL E AKFG PE V D + V VEI G G Sbjct: 2401 IEQFSGVVPKSPIRELLEMEPETAKFG-KPERLV--------DGKVRVSVEIFGKGSFSG 2451 Query: 204 MDCSKRAAEQVAAAEVLK 221 + + R A+ AA L+ Sbjct: 2452 VGRNYRIAKSTAAKRALR 2469 >gi|170091728|ref|XP_001877086.1| predicted protein [Laccaria bicolor S238N-H82] gi|164648579|gb|EDR12822.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1358 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 31/167 (18%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S +E+ IG+ F LL +ALTHSS+ SY RLEF+GD IL ++ +FN + Sbjct: 1075 SAIERIIGHNFQRPHLLAQALTHSSMQGHESASYGRLEFIGDAILDFMVIQHIFNRDQTL 1134 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 G L++ ++VS + V VSS LRK + L + Sbjct: 1135 SPGALTLLKGAMVSNSALAAVC----------VSSGLRKHL--------------LFESY 1170 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 L G IEV + ++ L + R+ ++ Q W G+ P Sbjct: 1171 QLAGSIEVYANELKARQQKEYLAA---EREGRSPGQYW----LGIEP 1210 >gi|157285011|gb|ABV31245.1| dicer-like 3 [Physcomitrella patens] Length = 1641 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 29/159 (18%) Query: 9 LEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 EKRIGY F N L +ALTH S++ Y+RLEFLGD +L L++ LF ++ Sbjct: 1353 FEKRIGYTFKNIYLPLEALTHFSNMVGDQIRCYQRLEFLGDAVLDFLLTRHLFTSHPTST 1412 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQA---------- 116 G L+ + V+ E ++VA + L ++R S L + F+ S +A Sbjct: 1413 PGLLTSLRTASVNNERFARVAVKHRLHCYLRHGSGRLLHQIEEFVKSFEAADDDQKNSSF 1472 Query: 117 ------------DVVESLIAALYLDGGIEVAGTFVDKYW 143 D+VES+ A+ +D + +DK W Sbjct: 1473 GLNGLEAPKVLGDLVESIAGAILVDTCFD-----LDKVW 1506 >gi|302664704|ref|XP_003023979.1| nucleolar RNAse III, putative [Trichophyton verrucosum HKI 0517] gi|291188003|gb|EFE43361.1| nucleolar RNAse III, putative [Trichophyton verrucosum HKI 0517] Length = 452 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 70/138 (50%), Gaps = 11/138 (7%) Query: 16 AFANRSLLEKALTHSSI-------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 + SL TH+ I + + +++Y+RLE LGD + L+ + L++ +F + Sbjct: 185 PIGDESLKTAVFTHTGIMERGPVSTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPA 244 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+++ ++V ET ++ A ++ SSD+ K+V T + DV E+ +AA + Sbjct: 245 GKIAQARETMVKNETLAEYAIAYGFDRLLKTSSDI-KNVPKRWTKVMGDVFEAYVAAAII 303 Query: 129 ---DGGIEVAGTFVDKYW 143 GG++ +++ + W Sbjct: 304 ADPKGGLQAVESWLTQLW 321 >gi|308485595|ref|XP_003104996.1| CRE-DCR-1 protein [Caenorhabditis remanei] gi|308257317|gb|EFP01270.1| CRE-DCR-1 protein [Caenorhabditis remanei] Length = 1941 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 37/171 (21%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 +++ LE+RIGY F R+ L +A TH+S I++ Y+RLEFLGD +L +I+ LF Sbjct: 1673 QFANLEERIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDV 1732 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELD---------------LASFIRVSSDLRKDVC 108 G L+ ++LV+ + +A + + + F+++ +D D Sbjct: 1733 RQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCADRNFDTN 1792 Query: 109 ----SFMTSIQ-----------------ADVVESLIAALYLDGGIEVAGTF 138 +M + + DV ES+ A+YLD G + T+ Sbjct: 1793 FNAEMYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTW 1843 >gi|307198394|gb|EFN79336.1| Endoribonuclease dcr-1 [Harpegnathos saltator] Length = 1479 Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 34/162 (20%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 ++EKR+GY F NR+ L +A TH S S + + Y+RLEFLGD +L LI+ ++ + Sbjct: 1278 SIEKRLGYKFNNRAYLLQAFTHPSYSVNRITDCYQRLEFLGDAVLDFLITCHIYEFCGNL 1337 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLAS---------------FIRVSSDLRKDV---- 107 G L+ ++LV+ T + +A L + F++ D + Sbjct: 1338 SPGALTDLRSALVNNITFACLAVRYGLHTCLLAYAPQLHEMINRFVKFQEDRNYAINDEL 1397 Query: 108 ---------CSFMTSIQ-----ADVVESLIAALYLDGGIEVA 135 C+ I D+ E+LI A+YLD +A Sbjct: 1398 LWVLLEEEDCNIAEYIDVPKVLGDLFETLIGAIYLDSNRNLA 1439 >gi|87240866|gb|ABD32724.1| Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] Length = 1939 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 23/158 (14%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + ++ + LE + F ++ LL +++TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1596 LRSVDFDALEGALNIKFKDKGLLIESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1655 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQ---- 115 + G L+ + V+ E ++V + +L +R SS L K + F+ +Q Sbjct: 1656 FSYTDLPPGRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKDFVKEVQDELS 1715 Query: 116 ------------------ADVVESLIAALYLDGGIEVA 135 D++ES+ A++LD G A Sbjct: 1716 KPGFNSFGLGDCKAPKVLGDILESIAGAIFLDSGRNTA 1753 >gi|294993977|ref|ZP_06799668.1| ribonuclease III [Mycobacterium tuberculosis 210] Length = 188 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 6/148 (4%) Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCS 109 + I+ LF+ EG+L+ S+V+ + + VAR L L + + + Sbjct: 1 MTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGA 60 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHA 167 +SI AD +ESL+ A+YL G+E A + + + A + D KT LQE A Sbjct: 61 DKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAA 120 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + P Y VT +GPDHD FT VV + Sbjct: 121 RGLGAPSYLVT-STGPDHDKEFTAVVVV 147 >gi|114654621|ref|XP_001154071.1| PREDICTED: dicer1 isoform 2 [Pan troglodytes] Length = 1868 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 33/176 (18%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110 G L+ ++LV+ + +A + D + + VS +L + F Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785 Query: 111 ------------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPL 1841 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372 >gi|148829108|gb|ABR14013.1| Dicer-1 [Penaeus monodon] Length = 2473 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 106/258 (41%), Gaps = 56/258 (21%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E++IGY F +RS L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 2217 YQVFEEKIGYTFRDRSYLLQAFTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 2276 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ-------- 115 G L+ ++LV+ + +A + D + R S L + + F+ + Sbjct: 2277 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINE 2336 Query: 116 ----------------------ADVVESLIAALYLDGGIEVAGTFVDKYW--------KQ 145 DV ES+ A++LD +G+ +D W ++ Sbjct: 2337 EYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLD-----SGSSLDAVWSVYYTMMCRE 2391 Query: 146 RALKSGKFRRDAKTEL--QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 SG + EL E AKFG PE V D + V VEI G G Sbjct: 2392 IEQFSGVVPKSPIRELLEMEPETAKFG-KPERLV--------DGKVRVSVEIFGKGSFSG 2442 Query: 204 MDCSKRAAEQVAAAEVLK 221 + + R A+ AA L+ Sbjct: 2443 VGRNYRIAKSTAAKRALR 2460 >gi|255547506|ref|XP_002514810.1| ATP binding protein, putative [Ricinus communis] gi|223545861|gb|EEF47364.1| ATP binding protein, putative [Ricinus communis] Length = 1388 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 22/145 (15%) Query: 9 LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE + Y+F + LL +ALTH S + Y+RLEFLGD +L LI+ L+ + Sbjct: 1146 LESLLKYSFRDPCLLVEALTHGSYMLPEIPRCYQRLEFLGDSVLDYLITVHLYEKYPGMS 1205 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTS------------- 113 G L+ ++ V+ + +Q A L +I S L KD+ S + + Sbjct: 1206 PGLLTDMRSASVNNDCYAQSAVREGLHKYILHASQKLHKDIVSTVANCKEFSSESTFGWE 1265 Query: 114 -------IQADVVESLIAALYLDGG 131 + DV+ESL A+++D G Sbjct: 1266 SEISFPKVLGDVIESLAGAIFVDSG 1290 Score = 39.7 bits (91), Expect = 0.29, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 30/129 (23%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 E LE LGD L + LF + + EG LS++ + L+S T ++ + + FIR Sbjct: 989 ESLETLGDSFLKYAVGQQLFKTYQNHHEGLLSIKKDKLISNATLCRLGCDSKIPGFIRNE 1048 Query: 101 S----------------DLRKDVCS------------FMTSIQADVVESLIAALYLDGGI 132 S L +++ S + ADVVE+LI A YL G Sbjct: 1049 SFDPKNWLIPDEISGCYSLSEEILSNGRKMYIKRRRKLKEKMIADVVEALIGA-YLSTGG 1107 Query: 133 EVAG-TFVD 140 E+AG F+D Sbjct: 1108 EIAGLLFLD 1116 >gi|310798327|gb|EFQ33220.1| RNase3 domain-containing protein [Glomerella graminicola M1.001] Length = 1532 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 30/155 (19%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 +++ +GY F +LL A H S +Y++ +Y+RLEFLGD +L ++ LF F A Sbjct: 1241 IKENLGYEFKYPALLRSAFKHPSYPRAYEDLPNYQRLEFLGDALLDMVCVDFLFKKFPDA 1300 Query: 67 KEGELSVRFNSLVSAETCSQVARELDL--------ASFIRVSSDL-------RKDV---- 107 L+ ++VS + + + +L L AS + + D ++D Sbjct: 1301 DPQWLTEHKTAMVSNQFLACLCVQLGLHKHVLSGHASLLNQTQDFVGVLECAKQDAAADG 1360 Query: 108 ----CSFMTSIQA-----DVVESLIAALYLDGGIE 133 C ++ QA DVVE+ I AL++D G + Sbjct: 1361 TFSQCYWIHVKQAPKFLSDVVEAYIGALFVDSGYD 1395 >gi|160285502|pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of Human Dicer gi|160285503|pdb|2EB1|B Chain B, Crystal Structure Of The C-Terminal Rnase Iii Domain Of Human Dicer gi|160285504|pdb|2EB1|C Chain C, Crystal Structure Of The C-Terminal Rnase Iii Domain Of Human Dicer Length = 200 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 33/176 (18%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 8 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110 G L+ ++LV+ + +A + D + + VS +L + F Sbjct: 68 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 127 Query: 111 ------------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 + D+ ESL A+Y+D G+ + + Y R L Sbjct: 128 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPL 183 >gi|213408108|ref|XP_002174825.1| dicer [Schizosaccharomyces japonicus yFS275] gi|212002872|gb|EEB08532.1| dicer [Schizosaccharomyces japonicus yFS275] Length = 1384 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 32/162 (19%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 S LE +GY F + LL+ A TH+S + Q +Y++LEFLGD +L ++ LF + Sbjct: 1105 SGLESLVGYTFKHPGLLKIAFTHASYVKTTQTAVNYQQLEFLGDAVLDFIVVRYLFKKYQ 1164 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLR---KDVCSFMTSIQ----- 115 + EL+ + V ++ + V+ +L L F ++ + D+R K+ S + +Q Sbjct: 1165 NKTAAELTDTKSFYVCNKSLAYVSFKLGLYDFMLQDNEDIRNAYKEYKSVIDKLQQDTKI 1224 Query: 116 ---------------------ADVVESLIAALYLDGGIEVAG 136 +D+ ES + A+YLD G + + Sbjct: 1225 DSNHPTPSEKFWLLIEPPKFLSDIFESFVCAVYLDSGFQFSA 1266 Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 21/145 (14%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L R+ + +SLLE + + S+ Y+R EF GD L L S +F + E Sbjct: 922 LRVRLQAKISTKSLLEASTSPGSV---LPFDYDRYEFYGDTFLKLAASNSVFLSYLWVPE 978 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------------ 110 +L + ++ T ++++ DL F+ + K F Sbjct: 979 CKLHIERKRIIRNSTLFTISKKHDLPGFLLSEPFVIKTFIPFGYQPTQKSKNKMERSQLL 1038 Query: 111 MTSIQADVVESLIAALYLDGGIEVA 135 AD+VES + A D G++ A Sbjct: 1039 ANKTVADIVESSLGACLYDSGVDEA 1063 >gi|323126809|gb|ADX24106.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 151 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 3/145 (2%) Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 +V E+ + +R ++I++ K +I D+ E+ + AL LD G++ Sbjct: 2 IVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVDEVRR 61 Query: 138 FVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 F+ + + K G F + D KT LQE +K + +Y+V GP H +F V V + Sbjct: 62 FLQQVMIPQVEK-GNFEKVKDYKTCLQELLQSKGDIAIDYQVISEKGPAHAKQFEVAVFV 120 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVL 220 + ++G+ SK+ AEQ AA L Sbjct: 121 NEEVLSKGLGKSKKMAEQDAAKNAL 145 >gi|297832974|ref|XP_002884369.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp. lyrata] gi|297330209|gb|EFH60628.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp. lyrata] Length = 2033 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 22/145 (15%) Query: 9 LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E + Y+F ++SLL +ALTH S + Y+RLEFLGD +L LI+ L++ + Sbjct: 1797 MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLS 1856 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----DLRKDVCSF-MTSIQA----- 116 G L+ ++ V+ E + VA + +L I +S + + V F +S+Q+ Sbjct: 1857 PGLLTDMRSASVNNECYALVAVKENLHKHILHASHVLHKHISRTVSEFEQSSLQSTFGWE 1916 Query: 117 ----------DVVESLIAALYLDGG 131 DV+ESL A+++D G Sbjct: 1917 CDISFPKVLGDVIESLAGAIFVDSG 1941 >gi|316974223|gb|EFV57735.1| putative ribosomal protein S7e [Trichinella spiralis] Length = 2029 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 3/62 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTL 58 +A ++ E +IGY F N++ L +ALTHSS + +SYERLEFLGD IL LIS Sbjct: 1763 TAYDLNSFEAKIGYRFTNKAYLIQALTHSSYNEVETPVTDSYERLEFLGDAILDYLISRH 1822 Query: 59 LF 60 L+ Sbjct: 1823 LY 1824 >gi|260907271|ref|ZP_05915593.1| ribonuclease III [Brevibacterium linens BL2] Length = 234 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 77/170 (45%), Gaps = 7/170 (4%) Query: 26 ALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 ALTH S + + ERLEFLGD +LGL+ + L+ EG L+ +++V+ Sbjct: 25 ALTHRSFAFEAGGIPTNERLEFLGDSVLGLVATESLYYDNPDLAEGSLAKMRSAVVNTRA 84 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 + +AR + I + SI AD VE+LI A ++ G E A FV + Sbjct: 85 LASIARRHGIGPHILLGKGEELTGGRDKDSILADTVEALIGATFVARGREEAFAFVHRLI 144 Query: 144 KQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 A+ G D KT LQE A Y++ SGPDH FT Sbjct: 145 DSMLSDAVNLGA-GMDYKTTLQEAAADLDLGAVSYEIV-SSGPDHAMVFT 192 >gi|301770225|ref|XP_002920522.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like [Ailuropoda melanoleuca] Length = 1931 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 62/260 (23%), Positives = 101/260 (38%), Gaps = 51/260 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR---------------------------------EL 91 G L+ ++LV+ + +A +L Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVXXXXXXXXXXDYHKYFKAVSPELFHVIDDFVQFQL 1786 Query: 92 DLASFIRVSSDLRKD-------VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + + S+LR+ + D+ ESL A+Y+D G+ + + Y Sbjct: 1787 EKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPM 1846 Query: 145 QRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 R L S R EL E +P + +D + V VE+ G Sbjct: 1847 MRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKF 1899 Query: 202 QGMDCSKRAAEQVAAAEVLK 221 +G+ S R A+ AA L+ Sbjct: 1900 KGVGRSYRIAKSAAARRALR 1919 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1293 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1350 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVS 1373 >gi|190344934|gb|EDK36728.2| hypothetical protein PGUG_00826 [Meyerozyma guilliermondii ATCC 6260] Length = 525 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 20/226 (8%) Query: 17 FANRSLLEKALTHS----SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 A R + K+ T+S ++S ERLEFLGD IL +++ ++F F +A EGELS Sbjct: 176 LAARVFVHKSTTNSKSYLAMSELINSHNERLEFLGDSILNNVVTLIIFEQFPTASEGELS 235 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 SL++ ++ + ++ S+ +D+ + I AD+ E+ I AL +D Sbjct: 236 RIRASLINNAFLTEFSLAYGFDKKLK-SNINEEDLRNGKQKIYADLFEAYIGALIIDRKY 294 Query: 133 EVAGTFVDKYWKQRALKS--GKFRRDAK--TELQEWAHAKF-------GVTPEYKVTFRS 181 ++ K W ++ +K G RD K E+ + A A+ + P+Y+V Sbjct: 295 DITEI---KAWLKKLMKDKLGSIARDMKGIKEVNKDAKAELYSLIGTAALHPQYEVIVE- 350 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 G + +F + ++G G S + A AA L + + T Sbjct: 351 GDGSEKQFEIACTMNGEILGVGRAPSHKEAGLRAAMHALTNKPVLT 396 >gi|294655098|ref|XP_457193.2| DEHA2B05302p [Debaryomyces hansenii CBS767] gi|199429689|emb|CAG85188.2| DEHA2B05302p [Debaryomyces hansenii] Length = 540 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 24/201 (11%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98 ERLEFLGD +L L++ ++FN F A EGELS +SLV+ T ++ + +R Sbjct: 220 ERLEFLGDSVLNNLVTVIIFNKFPEASEGELSKIRSSLVNNVTLAEFSILYGFDKKLRSN 279 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA------GTFVDKYWKQRALK--- 149 ++ + KD I AD+ E+ I AL ++ + T +D + A + Sbjct: 280 INDQILKDSTQ---KIYADIFEAYIGALAIERKFDYTEIQQWLTTLMDSRLNKHARQISS 336 Query: 150 SGKFRRDAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDP---RFTVVVEISGLAPAQGMD 205 + + +DAK+EL A F P+Y+V +P R T+ ++ G+ A Sbjct: 337 TEEINKDAKSELYSLIGTAAFH--PQYEVVKTGDGSSNPFVIRCTMGDDVLGVGTAP--- 391 Query: 206 CSKRAAEQVAAAEVLKREGIW 226 S + A AA E LK + + Sbjct: 392 -SNKDAGLRAAMEALKNKSLL 411 >gi|195380844|ref|XP_002049171.1| GJ20897 [Drosophila virilis] gi|194143968|gb|EDW60364.1| GJ20897 [Drosophila virilis] Length = 1722 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE+ +GY F +R+ L +ALTH S+ ++ Y+ LEF+GD IL LIS +F H Sbjct: 1433 INHQHLEQNLGYTFRDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFEH 1492 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVA 88 G+L+ ++LV+ T + + Sbjct: 1493 KTRMTPGQLTDLRSALVNNTTLACIC 1518 >gi|66822085|ref|XP_644397.1| hypothetical protein DDB_G0274077 [Dictyostelium discoideum AX4] gi|66823323|ref|XP_645016.1| hypothetical protein DDB_G0273051 [Dictyostelium discoideum AX4] gi|50057720|emb|CAC41976.2| putative RNaseIII [Dictyostelium discoideum] gi|60472520|gb|EAL70472.1| hypothetical protein DDB_G0274077 [Dictyostelium discoideum AX4] gi|60473215|gb|EAL71163.1| hypothetical protein DDB_G0273051 [Dictyostelium discoideum AX4] Length = 1203 Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 22/140 (15%) Query: 19 NRSLLEKALTHSSIS-------------HSYQ---ESYERLEFLGDRILGLLISTLLFNH 62 N +L + LTH S SY+ + Y+RLEFLGD +L + S LF Sbjct: 888 NNQVLREVLTHPSTKVISERKPIEKDQFQSYRPFMKDYQRLEFLGDSVLKITSSLYLFKK 947 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 FD+ EG LS + E ++++R + +R+++ + AD++E+ Sbjct: 948 FDNEGEGLLSKKREFYTKNEYLTELSRRIGFDYILRITT------IGDHSKPHADLIEAF 1001 Query: 123 IAALYLDGGIEVAGTFVDKY 142 I A+Y++ G + + ++ K+ Sbjct: 1002 IGAIYIECGFKDSFDWIIKW 1021 Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD +L +++ LF+ + +EG L+ + LV+ E S++ L S + Sbjct: 1102 ERLEFLGDAVLDFIVADYLFSKYKEQQEGYLTESKSKLVNNENLSKI-----LKSNKNIF 1156 Query: 101 SDLRKDVCS-FMTSIQADVVESLIAALYLDGGIE 133 S ++D F D +ES I YL G E Sbjct: 1157 SPSQQDSFKHFSVKRMGDHIESYIGGFYLKFGFE 1190 >gi|309355088|emb|CAP39460.2| CBR-DCR-1 protein [Caenorhabditis briggsae AF16] Length = 2030 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 39/173 (22%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 +++ LE++IGY F +R+ L +A TH+S I++ Y+RLEFLGD +L +I+ LF Sbjct: 1760 FQFAQLEEKIGYRFKDRAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFED 1819 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELD---------------LASFIRVSSDLRKDV 107 G L+ ++LV+ + +A + + + F+++ D D Sbjct: 1820 VRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCGDRSFDT 1879 Query: 108 CSFMTSIQ----------------------ADVVESLIAALYLDGGIEVAGTF 138 +F T + DV ES+ A+YLD G + T+ Sbjct: 1880 -NFNTEMYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTW 1931 >gi|241896736|emb|CAZ65730.1| dicer-2 protein [Mucor circinelloides f. lusitanicus] Length = 1608 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 23/142 (16%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +G F L+ +ALTH+S+ +S Y+RLEFLGD IL ++ LF + A G ++ Sbjct: 1332 VGREFKTPLLIVEALTHASLPNSTSPCYQRLEFLGDAILDFMVIRYLFARYPDADPGIIT 1391 Query: 73 VRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ---------------- 115 +S V+ V E L I S L + + F++ ++ Sbjct: 1392 DLKDSCVNNHILGIVCIETGLYRHIIHYSGKLIRAIEFFVSEVEETKARGEAVGEYWVDF 1451 Query: 116 ------ADVVESLIAALYLDGG 131 +DVVES++ A ++D G Sbjct: 1452 NIPKVLSDVVESMLGATFVDAG 1473 >gi|80979087|gb|ABB54746.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1518 >gi|16215719|dbj|BAB69959.1| double-strand-specific ribonuclease [Drosophila melanogaster] Length = 1722 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1431 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1490 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1491 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1525 >gi|22026807|ref|NP_523778.2| Dicer-2 [Drosophila melanogaster] gi|21627058|gb|AAF57830.2| Dicer-2 [Drosophila melanogaster] Length = 1722 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1431 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1490 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1491 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1525 >gi|268576156|ref|XP_002643058.1| C. briggsae CBR-DCR-1 protein [Caenorhabditis briggsae] Length = 1863 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 39/173 (22%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 +++ LE++IGY F +R+ L +A TH+S I++ Y+RLEFLGD +L +I+ LF Sbjct: 1595 FQFAQLEEKIGYRFKDRAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFED 1654 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELD---------------LASFIRVSSDLRKDV 107 G L+ ++LV+ + +A + + + F+++ D D Sbjct: 1655 VRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCGDRSFDT 1714 Query: 108 CSFMTSIQ----------------------ADVVESLIAALYLDGGIEVAGTF 138 +F T + DV ES+ A+YLD G + T+ Sbjct: 1715 -NFNTEMYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTW 1766 >gi|123974683|ref|XP_001313928.1| RNase3 domain containing protein [Trichomonas vaginalis G3] gi|121895887|gb|EAY01056.1| RNase3 domain containing protein [Trichomonas vaginalis G3] Length = 810 Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 11/143 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNH-FDSA 66 ++ Y F N ++ + L S S + +YERLE+LGD +L LL +FN ++ A Sbjct: 379 EKFNYTFKNWHIVWQFLIDPSYYFRSSQFIHNYERLEYLGDTVLDLLFGISVFNGCYNYA 438 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG +S + V T S+++ LDL S + S+ D+ AD+ E+L A+ Sbjct: 439 NEGLMSELKIAFVKNRTFSKISEILDLKSLLCTSTPTNYDLGK---KGSADLFEALFGAI 495 Query: 127 YLDGG----IEVAGTFVDKYWKQ 145 LD IE+ +++Y ++ Sbjct: 496 LLDSNISKCIEIFKKIIEEYQEE 518 Score = 42.4 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 13/168 (7%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 +N + ALTHSS+ + +YER+EF+GD I+ + F +A E +S+ + Sbjct: 573 SNVTQFTVALTHSSVG---KYNYERIEFIGDLIVKYSLIVSQMEAFPNATESGMSIASSF 629 Query: 78 LVSAETCSQVARE---LDLASFIR---VSSDLRK-DVCSFMT-SIQADVVESLIAALYLD 129 L S + + A + +DL S +R S D K D+ T DV E++ AA+ Sbjct: 630 LKSNDFLGKRAYKIGLIDLLSIVRKENSSEDAAKGDIDESRTPKYYGDVFEAITAAIAGT 689 Query: 130 GGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 GI A FV K K+ + S K +L + +F + P + Sbjct: 690 FGIITAMRFVIKNSIGKEWPIDSNHPNLPIKVQLLYFLQNEFKIIPNF 737 >gi|307195788|gb|EFN77602.1| Endoribonuclease Dcr-1 [Harpegnathos saltator] Length = 1807 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 100/254 (39%), Gaps = 45/254 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y LEK IGY F + S L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1550 YEELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 1609 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ--------- 115 G L+ ++LV+ + +A + R S V + IQ Sbjct: 1610 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENGHSISE 1669 Query: 116 ----------------------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 DV ESL A+YLD G+ + + Y ++ Sbjct: 1670 EYYLIGKEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEIEQFS 1729 Query: 154 RRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K+ ++E AKFG PE R R V V++ G +G+ + Sbjct: 1730 TNVPKSPIRELLELEPETAKFG-KPEKLADGR-------RVRVTVDVFGKGSFKGIGRNY 1781 Query: 209 RAAEQVAAAEVLKR 222 R A+ AA LK+ Sbjct: 1782 RIAKCTAAKCALKK 1795 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 G+ + SL+ +ALT S+ + + ERLE +GD L I+T L+ +D+ EG+LS Sbjct: 1266 GHPGPSPSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLS 1322 >gi|40215441|gb|AAR82738.1| SD11113p [Drosophila melanogaster] Length = 1640 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1410 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1469 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1470 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1504 >gi|302506394|ref|XP_003015154.1| nucleolar RNAse III, putative [Arthroderma benhamiae CBS 112371] gi|291178725|gb|EFE34514.1| nucleolar RNAse III, putative [Arthroderma benhamiae CBS 112371] Length = 399 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 69/138 (50%), Gaps = 11/138 (7%) Query: 16 AFANRSLLEKALTHSSI-------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 + SL TH+ I + + +++Y+RLE LGD + L+ + L++ +F + Sbjct: 132 PIGDESLKTAVFTHTGIMERGPVSTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPA 191 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+++ ++V ET ++ A ++ SSD+ K V T + DV E+ +AA + Sbjct: 192 GKIAQARETMVKNETLAEYAIAYGFDRLLKTSSDI-KSVSKRWTKVMGDVFEAYVAAAII 250 Query: 129 ---DGGIEVAGTFVDKYW 143 GG++ +++ + W Sbjct: 251 ADPKGGLQAVESWLTQLW 268 >gi|80979095|gb|ABB54750.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1429 LEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMN 1488 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1489 PGALTDLRSALVNNTTLACICVRHRLHFFI 1518 >gi|260831340|ref|XP_002610617.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae] gi|229295984|gb|EEN66627.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae] Length = 1760 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 43/243 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E+ + Y+F +++ + +A TH S + + + Y+RLEFLGD +L LI+ LF Sbjct: 1509 YQQFEETVQYSFNDKAYMLQAFTHPSYHYNTITDCYQRLEFLGDAVLDYLITNHLFKDPQ 1568 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A + D +++ VS +L + +F+ Sbjct: 1569 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYLKFVSPELFNIISNFVQFQQEQGEEQGM 1628 Query: 112 ---TSIQ----------------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 T I DV ES+ A+YLD G+ + + Y + L Sbjct: 1629 DSQTYINDEGEEESEDIEVPKALGDVFESVAGAIYLDSGMSLETVWRVYYRMMKPLIDKF 1688 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S K R EL E +P + +D + V V + G +G+ + R Sbjct: 1689 SAKVPRSPVRELLEMEPETAKFSPSERT-------YDGKVRVTVTVIGKGQFKGVGRNYR 1741 Query: 210 AAE 212 A+ Sbjct: 1742 IAK 1744 >gi|195335297|ref|XP_002034311.1| GM19969 [Drosophila sechellia] gi|194126281|gb|EDW48324.1| GM19969 [Drosophila sechellia] Length = 1731 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1443 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1502 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1503 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1537 >gi|241858001|ref|XP_002416132.1| ribonuclease III, putative [Ixodes scapularis] gi|215510346|gb|EEC19799.1| ribonuclease III, putative [Ixodes scapularis] Length = 778 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 2/90 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 E+ G F + LL KA TH SI + S +RLEFLGD +L L+ S L+ +F Sbjct: 577 FEELTGIEFTHIRLLAKAFTHRSIGFNNLTLGSNQRLEFLGDTVLQLVASEYLYKYFPEH 636 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASF 96 EG LS+ +SLV+ T + V +L + F Sbjct: 637 HEGHLSLLRSSLVNNRTQAVVCDDLGMVEF 666 Score = 42.0 bits (97), Expect = 0.057, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 56/120 (46%), Gaps = 18/120 (15%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T SSISH+ ERLEFLGD ++ L S LF F +EG L+ ++V + + + Sbjct: 414 TASSISHN-----ERLEFLGDAVVEFLSSIHLFFMFPDLEEGGLATYRAAIVQNQHLAVL 468 Query: 88 AR------------ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 A+ EL ++ I S R M + + SL AL+LD GI VA Sbjct: 469 AKVILHSKVFTHVEELPISPHISFSLPARHAFAIGMLEETSWLFVSL-GALFLDSGIRVA 527 >gi|307108113|gb|EFN56354.1| hypothetical protein CHLNCDRAFT_144841 [Chlorella variabilis] Length = 229 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 69/130 (53%), Gaps = 3/130 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 R L++R+GY F+N LL AL HSS + + S + ++GD + L+++ + Sbjct: 64 RIHELQERLGYRFSNLYLLRLALIHSSAAPTTHNSI--MAWIGDAAMYLVVAEEVAAALG 121 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS-IQADVVESLI 123 A G+LS +L+ C + A L L+ ++ + +R +S + A++ E+++ Sbjct: 122 YAPIGQLSEVRKTLIGRAMCEKYAAHLGLSEYLVLGKSVRIQNAGVASSNMLAELFEAVM 181 Query: 124 AALYLDGGIE 133 A+YLDG ++ Sbjct: 182 GAVYLDGDLD 191 >gi|320590575|gb|EFX03018.1| rnase3 domain containing protein [Grosmannia clavigera kw1407] Length = 1246 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/222 (23%), Positives = 91/222 (40%), Gaps = 46/222 (20%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65 ++ K +GY F LL A TH S Y+ SY+RLEFLGD +L + I LF+ F + Sbjct: 945 SIAKDLGYQFRFPRLLRSAFTHPSYPRIYENLPSYQRLEFLGDALLDMAIVDYLFHKFSN 1004 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ--------- 115 L+ ++VS + + ++ L I S ++RK + ++T ++ Sbjct: 1005 KDPQWLTEHKMAMVSNQFLAFLSVSLGFHRHILSFSGEMRKQILEYVTKVEEERVRAESE 1064 Query: 116 --------------------------ADVVESLIAALYLDGGIEVAGTF-------VDKY 142 ADV+E+ + AL++D + GT V Y Sbjct: 1065 AVEAGRPASEFARDYWVHVTHPPKALADVLEAYVGALFVDSEYDYHGTVLKFFNTHVQPY 1124 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +K +L + T + +FG +++V + PD Sbjct: 1125 FKDMSLYDTFANKHPVTFAVKMLSQRFGCR-DWRVIVQEIPD 1165 >gi|195584278|ref|XP_002081941.1| Dcr-2 [Drosophila simulans] gi|194193950|gb|EDX07526.1| Dcr-2 [Drosophila simulans] Length = 1666 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1378 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1437 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1438 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1472 >gi|172355315|ref|NP_001116485.1| endoribonuclease Dicer-1 [Apis mellifera] gi|170181362|gb|ACB11577.1| dicer-1 CG4792-PA-like protein [Apis mellifera] Length = 1946 Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 67/255 (26%), Positives = 102/255 (40%), Gaps = 47/255 (18%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y LEK IGY F + S L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1695 YEELEKNIGYKFHDISYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDTR 1754 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ--------- 115 G L+ ++LV+ + +A + R S V + IQ Sbjct: 1755 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSIVINRFVRIQEENGHSIGE 1814 Query: 116 ----------------------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 DV ESL A+YL G+ + + Y+ + +F Sbjct: 1815 EYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLGSGMSLDAVW-SVYYAIMKNEIEQF 1873 Query: 154 RRDA-KTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K+ ++E AKFG PE R R V V++ G +G+ + Sbjct: 1874 STNVPKSPIRELLELEPETAKFG-KPEKLADGR-------RVRVTVDVFGKGSFKGIGRN 1925 Query: 208 KRAAEQVAAAEVLKR 222 R A+ AA LK+ Sbjct: 1926 YRIAKCTAAKCALKK 1940 >gi|325685925|gb|EGD27990.1| ribonuclease III [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 154 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 70/150 (46%), Gaps = 11/150 (7%) Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 ++V E S+VA + I + K ++ DV E+ AL+LD GIE Sbjct: 5 NIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALLEDVFEAFNGALFLDQGIEA-- 62 Query: 137 TFVDKYWKQRA---LKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 V+K+ +Q + +G F RD KT+LQE VT EY+V S P F V Sbjct: 63 --VEKFLRQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVLNES--QQPPHFEV 118 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V + G A G +K+ AEQ AA+ L+ Sbjct: 119 EVLVDGKKLASGEGRNKKKAEQDAASHALE 148 >gi|80979105|gb|ABB54755.1| Dicer-2 [Drosophila simulans] gi|80979109|gb|ABB54757.1| Dicer-2 [Drosophila simulans] Length = 1714 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 1/113 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 G L+ ++LV+ T + + L FI ++ + S + Q Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQ 1538 >gi|80979107|gb|ABB54756.1| Dicer-2 [Drosophila simulans] Length = 1567 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 1/113 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 G L+ ++LV+ T + + L FI ++ + S + Q Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQ 1538 >gi|80979101|gb|ABB54753.1| Dicer-2 [Drosophila simulans] Length = 1714 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1520 >gi|80979115|gb|ABB54760.1| Dicer-2 [Drosophila simulans] Length = 1714 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1520 >gi|80979111|gb|ABB54758.1| Dicer-2 [Drosophila simulans] Length = 1564 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 1/113 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 G L+ ++LV+ T + + L FI ++ + S + Q Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQ 1538 >gi|80979113|gb|ABB54759.1| Dicer-2 [Drosophila simulans] Length = 1565 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 1/113 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 G L+ ++LV+ T + + L FI ++ + S + Q Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQ 1538 >gi|194755862|ref|XP_001960198.1| GF13246 [Drosophila ananassae] gi|190621496|gb|EDV37020.1| GF13246 [Drosophila ananassae] Length = 1727 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + ++ LE+ +GY F +R L +ALTH S ++ Y++LEF+GD IL LIS +F + Sbjct: 1441 INHANLEQNLGYTFKDRGYLLQALTHPSYPTNRITGCYQQLEFIGDAILDFLISGYIFEN 1500 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G+L+ ++LV+ T + + + FI Sbjct: 1501 NTKMTPGQLTDLRSALVNNTTLACICVRHKIHLFI 1535 >gi|80979103|gb|ABB54754.1| Dicer-2 [Drosophila simulans] Length = 1537 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1520 >gi|322704127|gb|EFY95726.1| abhydrolase domain-containing protein [Metarhizium anisopliae ARSEF 23] Length = 340 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 13/144 (9%) Query: 29 HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88 H +S + YERLE+LGD L L+ S+L++ F S G S L+ +T +Q Sbjct: 73 HPGLSDPLR-GYERLEWLGDAYLELIASSLIYQTFTSTPVGRCSQLREILIRNKTLAQYF 131 Query: 89 RELDLASFIRVSSDLRKDVCSFMTS--------IQADVVESLIAALYL---DGGIEVAGT 137 RE L S ++ DL+KD+ S QAD+ E+ +AA + + G+ + Sbjct: 132 REYGLESKAQLPGDLKKDISRGRGSSSDKDIIKTQADMFEAYVAAAIISDPENGMANTAS 191 Query: 138 FVDKYWKQRALKSGKFRRDAKTEL 161 ++ W R +K D K +L Sbjct: 192 WLKSLW-ARTIKDQIVANDRKRKL 214 >gi|242039323|ref|XP_002467056.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor] gi|241920910|gb|EER94054.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor] Length = 1586 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 28/162 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE ++ Y F+ + LL +A++H S+ Y+RLEFLGD +L LLI+ L+ Sbjct: 1179 FEELEAKLKYNFSVKGLLLEAVSHPSLQELGVDYCYQRLEFLGDSVLDLLITQHLYATHT 1238 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTS---------- 113 GEL+ ++LVS E +Q ++ S ++ S L + V ++ S Sbjct: 1239 DVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQVTEYVRSSLEYHGKENE 1298 Query: 114 -----------IQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + D++ES+ A+++D VD WK Sbjct: 1299 FVQQATFKAPKVLGDIMESITGAIFIDVNFN-----VDLVWK 1335 >gi|317035030|ref|XP_001400925.2| ATP-dependent helicase dcl2 [Aspergillus niger CBS 513.88] Length = 1407 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L IGY F N+SLL ++LTH S + +SY+RLEFLGD +L + I + L +H Sbjct: 1097 LMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQRLEFLGDAVLDMAIMSTLLSHPREIP 1156 Query: 68 EGELSVRFNSLVSA 81 +G ++ +++V+A Sbjct: 1157 QGLMTKIKHAVVNA 1170 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97 +Y+R EF GD +L +S LF + EG LS + +V ++ A + L +FI Sbjct: 948 NYQRYEFFGDSVLKFTVSCQLFFQHPNWHEGYLSEGRDEIVQNSRLARAALDAGLDAFIM 1007 Query: 98 -------RVSSDLRKDVCSFM-------TSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 + S+ L + S T + ADVVE+LI A Y+DGG A + ++ Sbjct: 1008 NKMFTPRKWSAPLISEKISLTPKQRTMSTKVLADVVEALIGASYIDGGFAAAHACIHRFL 1067 Query: 144 KQRALKS 150 + L++ Sbjct: 1068 PEVNLEN 1074 >gi|158706449|sp|A2R345|DCL21_ASPNC RecName: Full=Dicer-like protein 2-1; Includes: RecName: Full=Endoribonuclease dcl2-1; Includes: RecName: Full=ATP-dependent helicase dcl2-1 Length = 1387 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L IGY F N+SLL ++LTH S + +SY+RLEFLGD +L + I + L +H Sbjct: 1097 LMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQRLEFLGDAVLDMAIMSTLLSHPREIP 1156 Query: 68 EGELSVRFNSLVSA 81 +G ++ +++V+A Sbjct: 1157 QGLMTKIKHAVVNA 1170 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97 +Y+R EF GD +L +S LF + EG LS + +V ++ A + L +FI Sbjct: 948 NYQRYEFFGDSVLKFTVSCQLFFQHPNWHEGYLSEGRDEIVQNSRLARAALDAGLDAFIM 1007 Query: 98 -------RVSSDLRKDVCSFM-------TSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 + S+ L + S T + ADVVE+LI A Y+DGG A + ++ Sbjct: 1008 NKMFTPRKWSAPLISEKISLTPKQRTMSTKVLADVVEALIGASYIDGGFAAAHACIHRFL 1067 Query: 144 KQRALKS 150 + L++ Sbjct: 1068 PEVNLEN 1074 >gi|327301473|ref|XP_003235429.1| RNase3 domain-containing protein [Trichophyton rubrum CBS 118892] gi|326462781|gb|EGD88234.1| RNase3 domain-containing protein [Trichophyton rubrum CBS 118892] Length = 399 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 11/138 (7%) Query: 16 AFANRSLLEKALTHSSI-------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 + SL TH+ I + + +++Y+RLE LGD + L+ + L++ +F + Sbjct: 132 PIGDESLKTAVFTHTGIMERGPISTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPA 191 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+++ ++V ET ++ A ++ SSD+ K V T + DV E+ +AA + Sbjct: 192 GKIAQARETMVKNETLAEYAVAYGFDQLLKTSSDI-KSVPKRWTKVMGDVFEAYVAAAII 250 Query: 129 ---DGGIEVAGTFVDKYW 143 GG+ +++ + W Sbjct: 251 ADPKGGLRAVESWLTQLW 268 >gi|326468912|gb|EGD92921.1| RNase3 domain-containing protein [Trichophyton tonsurans CBS 112818] gi|326480108|gb|EGE04118.1| double-strand-specific pac1 ribonuclease [Trichophyton equinum CBS 127.97] Length = 399 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 11/138 (7%) Query: 16 AFANRSLLEKALTHSSI-------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 + SL TH+ I + + +++Y+RLE LGD + L+ + L++ +F + Sbjct: 132 PIGDESLKTAVFTHTGIMERGPVSTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPA 191 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+++ ++V ET ++ A ++ SSD+ K V T + DV E+ +AA + Sbjct: 192 GKIAQARETMVKNETLAEYAIAYGFDQLLKTSSDI-KSVPKRWTKVMGDVFEAYVAAAII 250 Query: 129 ---DGGIEVAGTFVDKYW 143 GG+ +++ + W Sbjct: 251 ADPKGGLRAVESWLSQLW 268 >gi|328716581|ref|XP_003245985.1| PREDICTED: endoribonuclease Dcr-1-like isoform 2 [Acyrthosiphon pisum] Length = 1489 Score = 54.7 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 2/109 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + E+ +GY F +RS L +A+TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1357 FESFEQHLGYHFQDRSYLLQAMTHASYYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 1416 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMT 112 G L+ ++LV+ + +A + + +S L VC F+T Sbjct: 1417 QHSPGALTDLRSALVNNTIFASLAVRNGFHKYFKHLSPGLSDVVCRFVT 1465 >gi|254572848|ref|XP_002493533.1| RNAase III [Pichia pastoris GS115] gi|238033332|emb|CAY71354.1| RNAase III [Pichia pastoris GS115] gi|328354643|emb|CCA41040.1| ribonuclease III [Pichia pastoris CBS 7435] Length = 524 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 28/194 (14%) Query: 22 LLEKALTHSSISHSYQE--------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 L K TH S +E SYERLE+LGD +L L +++++ F ++ EG LSV Sbjct: 172 LRSKVFTHKSAVTQAEEDSIEAANSSYERLEYLGDAVLELAVTSIVMKEFPASSEGHLSV 231 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDL--RKDVCSFMTSIQADVVESLIAALYLDGG 131 +VS ++ L F S L +++ I AD+ E+ I ALY+ Sbjct: 232 CRQQIVSNSNLENYSK---LYGFPEKLSSLMSKEETDKNNGKIYADIFEAYIGALYVQNN 288 Query: 132 IEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKF-------GVTPEYKVTFRS 181 ++ T + ++ + A +++ K +RD K+ L + A K P+Y VT + Sbjct: 289 NDL--TMIQEWLGKLARPVIEAMKMKRD-KSYLNKSAKEKLYALIGSAKSAPKY-VTLDN 344 Query: 182 GPDHDPRFTVVVEI 195 GP D + V VE+ Sbjct: 345 GPARD-EWLVQVEM 357 >gi|6715634|gb|AAF26461.1|AC007323_2 T25K16.4 [Arabidopsis thaliana] Length = 2024 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 1/108 (0%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + ++ + LE+ + Y F + LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1642 LKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1701 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDV 107 + S G L+ + V+ E ++VA + L ++R SS L K V Sbjct: 1702 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQV 1749 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S L L+ I Y +LE ALT +S ++ YER E LGD L ++S LF Sbjct: 1427 SMLLAVQLKNLISYPIPTSKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRFLFL 1483 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + EG+L+ +VS Q A L S+I+ Sbjct: 1484 KYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1520 >gi|134081603|emb|CAK46537.1| unnamed protein product [Aspergillus niger] Length = 1352 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L IGY F N+SLL ++LTH S + +SY+RLEFLGD +L + I + L +H Sbjct: 1062 LMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQRLEFLGDAVLDMAIMSTLLSHPREIP 1121 Query: 68 EGELSVRFNSLVSA 81 +G ++ +++V+A Sbjct: 1122 QGLMTKIKHAVVNA 1135 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97 +Y+R EF GD +L +S LF + EG LS + +V ++ A + L +FI Sbjct: 913 NYQRYEFFGDSVLKFTVSCQLFFQHPNWHEGYLSEGRDEIVQNSRLARAALDAGLDAFIM 972 Query: 98 -------RVSSDLRKDVCSFM-------TSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 + S+ L + S T + ADVVE+LI A Y+DGG A + ++ Sbjct: 973 NKMFTPRKWSAPLISEKISLTPKQRTMSTKVLADVVEALIGASYIDGGFAAAHACIHRFL 1032 Query: 144 KQRALKS 150 + L++ Sbjct: 1033 PEVNLEN 1039 >gi|46117132|ref|XP_384584.1| hypothetical protein FG04408.1 [Gibberella zeae PH-1] Length = 1451 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE+ IGY F +SLL +A+TH S + Q SYE+LEFLGD +L ++ T +F Sbjct: 1157 LEELIGYTFQKKSLLIEAMTHGSYAADGQQRSYEQLEFLGDAVLDYIVVTRMFQSDPPVP 1216 Query: 68 EGELSVRFNSLVSAE 82 G L + ++ +A+ Sbjct: 1217 NGRLHMVKTAMANAD 1231 >gi|218283082|ref|ZP_03489177.1| hypothetical protein EUBIFOR_01763 [Eubacterium biforme DSM 3989] gi|218216151|gb|EEC89689.1| hypothetical protein EUBIFOR_01763 [Eubacterium biforme DSM 3989] Length = 198 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 6/149 (4%) Query: 60 FNHF---DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 N+F +EG+++ V T + R+L F+R+ K SI A Sbjct: 29 LNYFLMEPKMREGQMTTLRAQTVCESTLYVLNRQLGWYEFLRLGVGEEKTGGRNRESILA 88 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174 D E+ I A+Y+D G V + KY K K K D KT LQE A T + Sbjct: 89 DQFEACIGAIYIDQGYHVCDEILTKYMKP-VFKQEKSEAVTDYKTHLQEVIQADSRKTIQ 147 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 YK+ GP + P FT+ V + + QG Sbjct: 148 YKLLEEKGPSNAPTFTMGVYLDDILLGQG 176 >gi|294611999|gb|ADF27744.1| ribonuclease III [Ehrlichia ruminantium] Length = 71 Score = 54.7 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 36/59 (61%) Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 + +E+LI A+YLDGG++ A F+ +WK A +DAKT LQEWA +K P Y Sbjct: 13 NALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSY 71 >gi|255933596|ref|XP_002558177.1| Pc12g13700 [Penicillium chrysogenum Wisconsin 54-1255] gi|211582796|emb|CAP80997.1| Pc12g13700 [Penicillium chrysogenum Wisconsin 54-1255] Length = 1393 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNH 62 + + L IGY F + +LL +ALTH+S + + +SY+RLEFLGD +L +++ ++ H Sbjct: 1104 INHHRLAGLIGYTFNDPALLTEALTHASCEYDTSTQSYQRLEFLGDAVLDMVVMAVIAGH 1163 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVAREL 91 +G +++ +S+V+A + EL Sbjct: 1164 PVEMDQGPMTLLKHSVVNANLLAFFCMEL 1192 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 15/119 (12%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +Y+R EF GD +L +S LF + EG LS + L+ ++ A +L + SF+ Sbjct: 960 NYQRYEFFGDSVLKFTVSCQLFFRNGNWHEGYLSESRDKLIQNSRLARAALDLGIDSFVL 1019 Query: 99 VSS-DLRKDVCSFM--------------TSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 S RK + T + ADVVESLI A Y+DGGI A + ++ Sbjct: 1020 TSRFTPRKWTTPLIRNKLEPSTAKRNISTKVLADVVESLIGAAYVDGGIREAQACLHRF 1078 >gi|241061228|ref|XP_002408100.1| dicer-1, putative [Ixodes scapularis] gi|215492369|gb|EEC02010.1| dicer-1, putative [Ixodes scapularis] Length = 2050 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E RIGY F +R+ L +A TH+S ++ + Y+RLEFLGD +L LI+ L++ Sbjct: 1794 YDAFEARIGYRFRDRAYLLQAFTHASYHYNRLTDCYQRLEFLGDAVLDYLITRHLYDDPQ 1853 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ + +A + D + + Sbjct: 1854 RHSPGTLTDLRSALVNNTFFASLAVKYDFHRYFK 1887 >gi|321461347|gb|EFX72380.1| hypothetical protein DAPPUDRAFT_308316 [Daphnia pulex] Length = 1741 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/248 (22%), Positives = 107/248 (43%), Gaps = 42/248 (16%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + E++I Y F +RS L +A +H+S + + Y+RLEFLGD +L LI+ L+ + Sbjct: 1490 FESFEEKICYKFNDRSYLLQAFSHASYYLNRLTDCYQRLEFLGDAVLDYLITRYLYENLP 1549 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTS---------- 113 G L+ ++LV+ T + +A + + + +S L + + F+ + Sbjct: 1550 RHPPGALTDLRSALVNNTTFAVLAERYEFHRYFKHLSPSLNQIMDKFIKAQEENGHSINE 1609 Query: 114 --------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AK 158 + DV ES+ A+YLD + + + Y+ + +F ++ K Sbjct: 1610 EYYMIEAEDVEVPKVLGDVFESVAGAIYLDSHMSLNAVW-RVYYNMMKKEIDEFSKNVPK 1668 Query: 159 TELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + ++E KFG D R V V++ G +G+ + R A+ Sbjct: 1669 SPIRELLELETDRVKFGKAERLP---------DGRLRVTVDVIGKGTFKGIGRNYRIAKC 1719 Query: 214 VAAAEVLK 221 AA L+ Sbjct: 1720 TAAKYALR 1727 >gi|289711908|gb|ACC62400.2| ribonuclease III [Penaeus monodon] Length = 2473 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 105/258 (40%), Gaps = 56/258 (21%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E++IGY F +RS L +A TH+S + Y+RLEFLGD +L LI+ L+ Sbjct: 2217 YQVFEEKIGYTFRDRSYLLQAFTHASYYKNRLTGCYQRLEFLGDAVLDYLITRHLYEDKR 2276 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ-------- 115 G L+ ++LV+ + +A + D + R S L + + F+ + Sbjct: 2277 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINE 2336 Query: 116 ----------------------ADVVESLIAALYLDGGIEVAGTFVDKYW--------KQ 145 DV ES+ A++LD +G+ +D W ++ Sbjct: 2337 EYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLD-----SGSSLDAVWSVYYTMMCRE 2391 Query: 146 RALKSGKFRRDAKTEL--QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 SG + EL E AKFG PE V D + V VEI G G Sbjct: 2392 IEQFSGVVPKSPIRELLEMEPETAKFG-KPERLV--------DGKVRVSVEIFGKGSFSG 2442 Query: 204 MDCSKRAAEQVAAAEVLK 221 + + R A+ AA L+ Sbjct: 2443 VGRNYRIAKSTAAKRALR 2460 >gi|242018047|ref|XP_002429494.1| dicer-1, putative [Pediculus humanus corporis] gi|212514432|gb|EEB16756.1| dicer-1, putative [Pediculus humanus corporis] Length = 2179 Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 72/265 (27%), Positives = 109/265 (41%), Gaps = 58/265 (21%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ I Y F +RS L +ALTH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1914 FDIFEESIKYRFRDRSYLLQALTHASYYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 1973 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQA------- 116 G L+ ++LV+ + +A D + R + L + V F+ QA Sbjct: 1974 HHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLCPSLNEVVDRFVRFQQANGHAISE 2033 Query: 117 -----------------------DVVESLIAALYLDGGIEVAGTFVDKYWK--QRALK-- 149 DV ES+ A++LD G+ +D W+ R +K Sbjct: 2034 EFYLIEEEECEEAEDVEVPKALGDVFESVAGAIFLDSGMS-----LDAVWRVYYRIMKNE 2088 Query: 150 ----SGKFRRDAKTELQEW--AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 S + EL E A+FG PE R R V VE+ G G Sbjct: 2089 IELFSTNVPKSPIRELFELEPETAQFG-KPEKLADGR-------RVRVSVEVFGKGIFNG 2140 Query: 204 MDCSKRAAEQVAAA---EVLKREGI 225 + + R A+ AA + LKR+G+ Sbjct: 2141 IGRNYRIAKCTAAKCALKQLKRKGL 2165 >gi|154484153|ref|ZP_02026601.1| hypothetical protein EUBVEN_01864 [Eubacterium ventriosum ATCC 27560] gi|149735195|gb|EDM51081.1| hypothetical protein EUBVEN_01864 [Eubacterium ventriosum ATCC 27560] Length = 379 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 19/140 (13%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGL-LISTLL--FNHFD 64 +E++IGY F NR LL +A S S + E+ E LEF+GD+ L L ++ TL + H Sbjct: 16 VERQIGYKFVNRDLLVQAFVRKSYSMENGGENNEVLEFIGDKALDLSVVKTLTDKYGHMI 75 Query: 65 SAK---------------EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 S + EG+L+ + LV E S EL LA F+ +S K+ Sbjct: 76 SDEPDYEDEDDEFYCEYSEGKLTHLKSLLVRKEYLSARIDELKLAPFLIMSKGDLKNNID 135 Query: 110 FMTSIQADVVESLIAALYLD 129 TS++ D+ E++I A+ LD Sbjct: 136 KNTSVKEDLFEAIIGAVTLD 155 >gi|146423032|ref|XP_001487449.1| hypothetical protein PGUG_00826 [Meyerozyma guilliermondii ATCC 6260] Length = 525 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 26/229 (11%) Query: 17 FANRSLLEKALTHS----SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 A R + K+ T+S ++S ERLEFLGD IL +++ ++F F +A EGELS Sbjct: 176 LAARVFVHKSTTNSKSYLAMSELINSHNERLEFLGDSILNNVVTLIIFEQFPTASEGELS 235 Query: 73 VRFNSLVSAETCSQVARELDLASFI--RVSSDLR-KDVCSFMTSIQADVVESLIAALYLD 129 R +L+ + E LA ++ S++ +D+ + I AD+ E+ I AL +D Sbjct: 236 -RIRALL---INNAFLTEFSLAYGFDKKLKSNINEEDLRNGKQKIYADLFEAYIGALIID 291 Query: 130 GGIEVAGTFVDKYWKQRALKS--GKFRRDAK--TELQEWAHAKF-------GVTPEYKVT 178 ++ K W ++ +K G RD K E+ + A A+ + P+Y+V Sbjct: 292 RKYDITEI---KAWLKKLMKDKLGSIARDMKGIKEVNKDAKAELYSLIGTAALHPQYEVI 348 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 G + +F + ++G G S + A AA L + + T Sbjct: 349 VE-GDGSEKQFEIACTMNGEILGVGRAPSHKEAGLRAAMHALTNKPVLT 396 >gi|281205614|gb|EFA79803.1| hypothetical protein PPL_06622 [Polysphondylium pallidum PN500] Length = 1043 Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 20/137 (14%) Query: 19 NRSLLEKALTHSSISHS----------------YQESYERLEFLGDRILGLLISTLLFNH 62 N+ LL + TH SI+ + ++ +RLE+ GD IL I+ L+ Sbjct: 666 NQRLLREVFTHPSINRNNTVPPRSLKVFKDYQLFKSDNQRLEYFGDSILKFCITYYLYFL 725 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + +A EG L+ + + + S + + + +R+ +D +ADV+E+L Sbjct: 726 YPNAPEGFLTTKRSEVTSNTYLQNICDQTSIDDILRLGLSNTED----YKKPKADVIEAL 781 Query: 123 IAALYLDGGIEVAGTFV 139 AA+YL+ GI V F+ Sbjct: 782 FAAVYLECGINVVYEFI 798 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 10/121 (8%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 L ++A+ SS + +Y+RLEFLGD + L++S L+++F +EG LS LV Sbjct: 843 LFQEAMNCSS---DPKMNYQRLEFLGDSYIDLVVSEFLYHNFPREQEGFLSQTRALLVRN 899 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 E + A L R+ + V T D+ ES L LDGG++ +F+ K Sbjct: 900 EKLANTANHL------RIRQSIDPSVVP-TTKRMGDLFESFTGCLLLDGGLQDTKSFLIK 952 Query: 142 Y 142 + Sbjct: 953 H 953 >gi|296081735|emb|CBI20740.3| unnamed protein product [Vitis vinifera] Length = 1688 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 24/143 (16%) Query: 9 LEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE +IGY F+ + LL +A+TH++ + Y Y+RLEFLGD +L +LI+ L+ Sbjct: 1269 LESKIGYEFSVKGLLLEAITHATEQELGVGY--CYQRLEFLGDSVLDVLITWHLYQSHRD 1326 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------RKDVCSFM 111 GEL+ ++ V+ E+ +QVA +L ++ S L DV + + Sbjct: 1327 IDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKYLSGSDDVPNPL 1386 Query: 112 TSIQ-----ADVVESLIAALYLD 129 S + D+VES+ A+ +D Sbjct: 1387 QSTKGPKALGDLVESIAGAILID 1409 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 8/142 (5%) Query: 2 SALRYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 S + S L + I + ++ SL+ +A+T S S+ S ERLE LGD +L +S Sbjct: 1050 SLMLASQLREEIAFTTGSQISSSLILEAITTLRCSESF--SMERLELLGDSVLKYAVSCH 1107 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQAD 117 LF + EG+LS R + +V T ++ + L +IR + D R+ V SI+ Sbjct: 1108 LFLKYPKKHEGQLSARRSWVVCNSTLHKLGTDRSLQGYIRDGAFDPRRWVAPGQRSIRPV 1167 Query: 118 VVESLIAAL--YLDGGIEVAGT 137 + AL LDG + T Sbjct: 1168 PCSCGVDALEVPLDGKFQTEDT 1189 >gi|225429722|ref|XP_002280293.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1661 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 24/143 (16%) Query: 9 LEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE +IGY F+ + LL +A+TH++ + Y Y+RLEFLGD +L +LI+ L+ Sbjct: 1242 LESKIGYEFSVKGLLLEAITHATEQELGVGY--CYQRLEFLGDSVLDVLITWHLYQSHRD 1299 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------RKDVCSFM 111 GEL+ ++ V+ E+ +QVA +L ++ S L DV + + Sbjct: 1300 IDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKYLSGSDDVPNPL 1359 Query: 112 TSIQ-----ADVVESLIAALYLD 129 S + D+VES+ A+ +D Sbjct: 1360 QSTKGPKALGDLVESIAGAILID 1382 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 8/142 (5%) Query: 2 SALRYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 S + S L + I + ++ SL+ +A+T S S+ S ERLE LGD +L +S Sbjct: 1023 SLMLASQLREEIAFTTGSQISSSLILEAITTLRCSESF--SMERLELLGDSVLKYAVSCH 1080 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQAD 117 LF + EG+LS R + +V T ++ + L +IR + D R+ V SI+ Sbjct: 1081 LFLKYPKKHEGQLSARRSWVVCNSTLHKLGTDRSLQGYIRDGAFDPRRWVAPGQRSIRPV 1140 Query: 118 VVESLIAAL--YLDGGIEVAGT 137 + AL LDG + T Sbjct: 1141 PCSCGVDALEVPLDGKFQTEDT 1162 >gi|158706455|sp|Q2H0G2|DCL1_CHAGB RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease DCL1; Includes: RecName: Full=ATP-dependent helicase DCL1 Length = 1607 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 4/116 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 E R+GYAF + LL A H + Y++ SY+RLEFLGD +L + LF+ F A Sbjct: 1275 FEARMGYAFTHPRLLRSAFQHPTYPSVYEKLPSYQRLEFLGDALLDMASVEFLFHRFPGA 1334 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVES 121 L+ ++VS + +A L I +S ++K++ ++T I+ D ++S Sbjct: 1335 DPQWLTEHKMAMVSNQFLGCLAVYLGFHRAISYCASAIQKEITEYVTEIE-DALQS 1389 >gi|218184775|gb|EEC67202.1| hypothetical protein OsI_34085 [Oryza sativa Indica Group] Length = 1093 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 30/160 (18%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE ++ Y F+ + LL +A+TH S+ Y+RLEFLGD +L LL++ L+ Sbjct: 730 LEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVD 789 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-----------------------LR 104 GEL+ ++LVS E +Q ++ S ++ S L+ Sbjct: 790 PGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQ 849 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 C + + D++ES+ A++LD VD W+ Sbjct: 850 HTTCK-VPKVLGDIMESIAGAVFLDTDFN-----VDMVWE 883 >gi|78099743|gb|ABB20894.1| dicer-like protein [Oryza sativa Indica Group] Length = 1116 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 25/150 (16%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE ++ Y F+ + LL +A+TH S+ Y+RLEFLGD +L LL++ L+ Sbjct: 724 LEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVD 783 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-----------------------LR 104 GEL+ ++LVS E +Q ++ S ++ S L+ Sbjct: 784 PGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLGQITEYVRSNLECQGKESEFLQ 843 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEV 134 C + + D++ES+ A++LD V Sbjct: 844 HTTCK-VPKVLGDIMESIAGAVFLDTDFNV 872 >gi|26553818|ref|NP_757752.1| ribonuclease III [Mycoplasma penetrans HF-2] gi|26453825|dbj|BAC44156.1| ribonuclease III [Mycoplasma penetrans HF-2] Length = 244 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 9/120 (7%) Query: 26 ALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 ALTH+S ++ + +Y+RLEFLGD ++ LIS LF + S E +++ +LV++E Sbjct: 35 ALTHNSYNNEKKVGYTYQRLEFLGDAVISKLISEFLFKN-KSLDEQKMTEIRKNLVNSEI 93 Query: 84 CSQVARELDL--ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 + + EL L +FI +L D I+AD+ E+ A+++D G + +++K Sbjct: 94 FKKASEELGLLDYAFIGKGINLENDT----KKIKADLFEAFAGAIFIDKGEDEVWKYLEK 149 >gi|161579129|gb|ABX72052.1| Dicer-1 protein [Tribolium castaneum] Length = 157 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E+ IGY F +RS L +ALTH+S S ++ + Y+RLEFLGD +L LI+ L+ Sbjct: 63 YDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTR 122 Query: 65 SAKEGELSVRFNSLVSAETCSQVA 88 G L+ ++LV+ + +A Sbjct: 123 MHSPGALTDLRSALVNNTIFASLA 146 >gi|169868762|ref|XP_001840952.1| hypothetical protein CC1G_03181 [Coprinopsis cinerea okayama7#130] gi|116498110|gb|EAU81005.1| hypothetical protein CC1G_03181 [Coprinopsis cinerea okayama7#130] Length = 2074 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 5/89 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E +GY F + LL +ALTH+S H SYER+EF+GD IL ++++ +L+ Sbjct: 1736 VEHMLGYTFKRKILLIEALTHASYREHINTISYERMEFIGDSILDMVVTDMLYRAPREYS 1795 Query: 68 EGELSVRFNSLVS----AETCSQVARELD 92 G + +R +++V+ A C + REL+ Sbjct: 1796 PGHIHLRRSAVVNGHFLAYICLGMWRELE 1824 >gi|255524265|ref|ZP_05391224.1| Ribonuclease III [Clostridium carboxidivorans P7] gi|255512090|gb|EET88371.1| Ribonuclease III [Clostridium carboxidivorans P7] Length = 152 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 4/139 (2%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK- 144 ++A++ DL +IR+S SI AD VE++IAA+Y+D G E A FV +K Sbjct: 8 EIAKKWDLGKYIRMSKGEELTGGRERVSILADCVEAIIAAIYIDAGFEKAKGFVLTNFKD 67 Query: 145 --QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 ++A+K+ K D KT+LQE V +Y + GP H +F V ++ Sbjct: 68 TIEKAIKN-KIILDYKTKLQEVMQKNGDVDIQYDLMKYEGPPHRRKFYTQVSVNNKVLGN 126 Query: 203 GMDCSKRAAEQVAAAEVLK 221 G SK+ +EQ AA + LK Sbjct: 127 GTGYSKKESEQSAAKKALK 145 >gi|224064945|ref|XP_002301611.1| predicted protein [Populus trichocarpa] gi|222843337|gb|EEE80884.1| predicted protein [Populus trichocarpa] Length = 303 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 23/153 (15%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ + Y F ++ LLE+ALTH+S S SYERLE++GD +L LL + + + Sbjct: 57 VEEILHYKFKSKKLLEEALTHASFSDQCF-SYERLEYVGDSVLNLLFTKEQYFLYPDLPP 115 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSI------------- 114 G L+ ++ V E ++VA + L ++R L + + F +I Sbjct: 116 GPLTRLRSANVDTEKLARVAIKHKLHRYLRHKMPLLEEQIREFSQAILDYPLHSNGLVET 175 Query: 115 ---QADVVESLIAALYLDGGIEVAGTFVDKYWK 144 AD+VE+ I A+++D +D WK Sbjct: 176 PKALADIVEAAIGAVFIDSNFS-----IDVVWK 203 >gi|195425457|ref|XP_002061021.1| GK10670 [Drosophila willistoni] gi|194157106|gb|EDW72007.1| GK10670 [Drosophila willistoni] Length = 1720 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + Y LE+ +GY F +R+ L +ALTH S+ ++ Y+ LEF+GD IL LIS +F Sbjct: 1436 INYHYLERNLGYTFKDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFER 1495 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVA 88 G+L+ ++LV+ T + + Sbjct: 1496 NIRMNPGQLTDLRSALVNNTTLACIC 1521 >gi|193582606|ref|XP_001943370.1| PREDICTED: endoribonuclease Dcr-1-like [Acyrthosiphon pisum] Length = 1626 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 64/253 (25%), Positives = 105/253 (41%), Gaps = 55/253 (21%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + E+ +GY F +RS L +A+TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1374 FESFEQHLGYYFQDRSYLLQAMTHASYYPNCLTDCYQRLEFLGDAVLDYLITRHLYEDKR 1433 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ--------- 115 G L+ ++LV+ + +A + +++ S +V +IQ Sbjct: 1434 RHPPGALTDLRSALVNNTIFASLAVKNGFHKYLKHLSPGLSEVVYRFVAIQEENGHTIDE 1493 Query: 116 ----------------------ADVVESLIAALYLDGGIEVAGTFVDKYWK-QRALKSGK 152 D+ ES+ A+YLD + +D WK + + Sbjct: 1494 EFCFSGEDDFEDAEDVEAPKVLGDIFESVAGAIYLDSNMS-----LDAVWKVYHKIMENE 1548 Query: 153 FRRDAKT-------ELQEWA--HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 ++ +K EL E AKF PE V R R V+VEI G +G Sbjct: 1549 IKQFSKNVPISPVRELLELEPNTAKFS-KPEKLVDGR-------RVRVIVEILGKGVFKG 1600 Query: 204 MDCSKRAAEQVAA 216 + + R A+ AA Sbjct: 1601 IGRNYRIAKCTAA 1613 >gi|320580371|gb|EFW94594.1| ribonuclease III, putative [Pichia angusta DL-1] Length = 347 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 95/225 (42%), Gaps = 23/225 (10%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F +RS + H S + + ERLEFLGD I+ L++ +LF + S EGELS+ Sbjct: 38 VFTHRSAVSNT-KHLSKKEILESNNERLEFLGDSIINNLVTQILFERYPSFDEGELSILR 96 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQADVVESLIAALYLDGGI 132 + L+S + + + + + V + KD +F I +DV E+ + LY+D Sbjct: 97 SQLISNSSLGEFSEKYGFPEKLVV--NFAKD-AAFQKGKHKIYSDVFEAYVGGLYVDSNY 153 Query: 133 EVAGTFVDKYWKQRALKS-----------GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 T K W ++ + DAK +L +A P +T ++ Sbjct: 154 SNLDTI--KKWLEQLITPRLSKLTERFNLKNLNNDAKAQL--YALIGSAALPPRYITKQT 209 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL-KREGI 225 G D F V I +G + + A AA + L KRE I Sbjct: 210 GNGFDVSFIVQCMIGDEIIGEGEGSNLKQAGLRAAEDALSKREVI 254 >gi|229025290|ref|ZP_04181710.1| Ribonuclease 3 [Bacillus cereus AH1272] gi|228736043|gb|EEL86618.1| Ribonuclease 3 [Bacillus cereus AH1272] Length = 163 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 3/157 (1%) Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EGEL+ ++V + + A EL S + + ++ ADV E+ I ALY Sbjct: 3 EGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALY 62 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD G+E F+ + + + G F D K++LQE EY++ GP H Sbjct: 63 LDQGLETVWGFLKEVVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQEKGPAH 121 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + F V ++ +A G SK+ AEQ AAAE LK+ Sbjct: 122 NREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 158 >gi|195424855|gb|ACF96960.1| dicer-1 [Litopenaeus vannamei] Length = 2473 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 102/258 (39%), Gaps = 56/258 (21%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E++IGY F +RS L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 2217 YQVFEEKIGYTFRDRSYLLQASTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 2276 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ--------- 115 G L+ ++LV+ + +A + D + R S V +Q Sbjct: 2277 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGPDRVIRDFVKMQEENGHKINE 2336 Query: 116 ----------------------ADVVESLIAALYLDGGIEVAGTFVDKYW--------KQ 145 DV ES+ A++LD +G+ +D W + Sbjct: 2337 EYYFMEEDEREAAEDIEVPKALGDVFESVAGAIFLD-----SGSSLDAVWSVYYTMMCPE 2391 Query: 146 RALKSGKFRRDAKTEL--QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 SG + EL E AKFG PE V D + V VEI G G Sbjct: 2392 IERFSGVVPKSPIRELLEMEPETAKFG-KPERLV--------DGKVRVSVEIFGKGSFSG 2442 Query: 204 MDCSKRAAEQVAAAEVLK 221 + + R A+ AA L+ Sbjct: 2443 VGRNYRIAKSTAAKRALR 2460 >gi|315049207|ref|XP_003173978.1| double-strand-specific pac1 ribonuclease [Arthroderma gypseum CBS 118893] gi|311341945|gb|EFR01148.1| double-strand-specific pac1 ribonuclease [Arthroderma gypseum CBS 118893] Length = 397 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 69/138 (50%), Gaps = 11/138 (7%) Query: 16 AFANRSLLEKALTHSSI-------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 + +L TH+ I + + +++Y+RLE LGD + L+ + L++ +F + Sbjct: 132 PIGDEALKTAVFTHTGIMERGPISTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPA 191 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+++ ++V ET ++ A ++ SSD+R V T + DV E+ +AA + Sbjct: 192 GKIAQARETMVKNETLAEYAIAYGFDQRLKTSSDIR-SVPKRWTKVMGDVFEAYVAAAII 250 Query: 129 ---DGGIEVAGTFVDKYW 143 GG++ +++ + W Sbjct: 251 ADPKGGLQAVESWLTQLW 268 >gi|291000766|ref|XP_002682950.1| hypothetical protein NAEGRDRAFT_62031 [Naegleria gruberi] gi|284096578|gb|EFC50206.1| hypothetical protein NAEGRDRAFT_62031 [Naegleria gruberi] Length = 1386 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 13/131 (9%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF---DS 65 L +++ + F N LL +A H S + + +YERLEFLGD +LGL++++ +F F S Sbjct: 1109 LTEKLNFQFENSGLLLEAFIHPSYNGVF--NYERLEFLGDSVLGLIVTSKIFEKFHKNSS 1166 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-------LRKDVCSFMTSIQADV 118 G +S +V + + + E L ++I S + KD ++ + +DV Sbjct: 1167 FSLGMMSKLREKIVMNKNFANLCIENQLQNYIIFSGNHIAQQVVHSKDDGEYVKML-SDV 1225 Query: 119 VESLIAALYLD 129 ESL AL++D Sbjct: 1226 FESLAGALFVD 1236 Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 21/137 (15%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LLE+ALT + +YE+LEF GD IL ++S +++ F G LS + VS Sbjct: 935 LLEEALT--AKRSQVGANYEKLEFFGDSILKYIVSKHIYHEFPLYSSGSLSQLQHKFVSN 992 Query: 82 ETCSQVARELDLASFIRV----SSDLRKDVCSFMTS-------------IQADVVESLIA 124 + VAR L FI +S L +++ F ++ + ADVVES+I Sbjct: 993 YFLASVARNTRLPLFIITEPLNTSQLVQNIGGFKSNKFADETNIEAEYKVLADVVESIIG 1052 Query: 125 ALY--LDGGIEVAGTFV 139 Y G +E F+ Sbjct: 1053 FCYHIFGGSLEQINRFL 1069 >gi|115437482|ref|NP_001043306.1| Os01g0551100 [Oryza sativa Japonica Group] gi|75105855|sp|Q5JK90|RTL1_ORYSJ RecName: Full=Ribonuclease 3-like protein 1; AltName: Full=Ribonuclease III-like protein 1; Short=RNase III-like protein 1 gi|57900069|dbj|BAD88131.1| unknown protein [Oryza sativa Japonica Group] gi|57900480|dbj|BAD87969.1| unknown protein [Oryza sativa Japonica Group] gi|113532837|dbj|BAF05220.1| Os01g0551100 [Oryza sativa Japonica Group] gi|215695480|dbj|BAG90671.1| unnamed protein product [Oryza sativa Japonica Group] Length = 256 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 25/144 (17%) Query: 14 GYAFANRS--LLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSA 66 GY+F + LLE ALTHS H E+ ++RLEFLGD LGL +T+ + Sbjct: 30 GYSFRDGGALLLEDALTHSV--HPRDEAGGRARHQRLEFLGDAALGLAFATIFYRDDPGL 87 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD--VCSFMTSIQ--------- 115 +G+L+V ++ VS + ++VA L +R + +D V F S++ Sbjct: 88 DQGDLTVLRSANVSTQKLARVAVRRRLYPLLRRYNCAPQDHEVSRFTKSVEGPYSGDPIE 147 Query: 116 -----ADVVESLIAALYLDGGIEV 134 AD+VE+++ A+YLD +++ Sbjct: 148 GPRVLADIVEAIVGAVYLDSKLDL 171 >gi|119174400|ref|XP_001239561.1| hypothetical protein CIMG_09182 [Coccidioides immitis RS] Length = 1357 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 28/167 (16%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + ++K++GY F LL A TH S ++ Y+RLEFLGD +L + +++ Sbjct: 1081 AQVKKKLGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1140 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQA------- 116 L+ ++VS + VA L L S + S+ L+ + +++ I+A Sbjct: 1141 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1200 Query: 117 ----------------DVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145 D+VE+ I A+++D G EV F K+ K+ Sbjct: 1201 PPDAWTLTSDPPKCLPDMVEAYIGAIFIDSGFSFEVVEEFFQKFLKK 1247 >gi|225678617|gb|EEH16901.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03] Length = 314 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 13/143 (9%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 ++SL TH ++ +++YERLE LGD + + + L+++ F Sbjct: 150 PVPDKSLQTAIFTHEGVNDPTNTTTTTASTEKNYERLELLGDAYIEIFATRLVWDTFPRL 209 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 + G LS LV ET ++ A L ++V++++R+ ++ T ++ D+ E+ +AA+ Sbjct: 210 RAGRLSQIREMLVKNETLAEYATRYGLDRRLQVAAEIRRQAKTW-TKVRGDLFEAYVAAV 268 Query: 127 YLDG---GIEVAGTFVDKYWKQR 146 L G+E+ ++ + W R Sbjct: 269 ILSHPKRGVEMVEEWLTQLWIPR 291 >gi|213409700|ref|XP_002175620.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces japonicus yFS275] gi|212003667|gb|EEB09327.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces japonicus yFS275] Length = 377 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 2/130 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + L+ S LEK++ + +R+ E HS+ ERLEFLGD + L++ Sbjct: 150 LPKLKSSKLEKQV-FMHISRAY-ELYPNHSNSQDLLSVHNERLEFLGDSFFNFYTTRLIY 207 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EGELS + LV ET + AR + +S KD + AD E Sbjct: 208 ERFAELNEGELSKLRSKLVGNETAEKYARLYGFDKRLVLSVSAEKDELREAKKVIADTFE 267 Query: 121 SLIAALYLDG 130 + + AL LDG Sbjct: 268 AYLGALALDG 277 >gi|30350181|gb|AAP31489.1| putative ribonuclease III [Western X phytoplasma] Length = 228 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 15/189 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L KR+ N SL ALTHSS +++ + ERLEFLGD ++ +++ L+ + + Sbjct: 6 LFKRLNIKPKNISLFINALTHSSYANENNAKHNNNERLEFLGDSVINFFMASYLYKN-NK 64 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTSIQADVVESLIA 124 EG ++ + V ++ A E+ L +I + + ++ V ++ SI D E+L Sbjct: 65 DDEGVMTKKRAQAVCVDSLLIYAEEIQLKKYIYLGKGEKKRSVHNY--SIVTDAFEALFG 122 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKS-GKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G + A K + Q L K D KT+LQE K YK+ Sbjct: 123 AIYLDLGFKQA----QKTFYQVVLPCLNKIINIIDFKTQLQELVQTK-KQNITYKIISEK 177 Query: 182 GPDHDPRFT 190 G H+ F Sbjct: 178 GLAHEKEFV 186 >gi|125526376|gb|EAY74490.1| hypothetical protein OsI_02382 [Oryza sativa Indica Group] Length = 256 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 25/144 (17%) Query: 14 GYAFANRS--LLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSA 66 GY+F + LLE ALTHS H E+ ++RLEFLGD LGL +T+ + Sbjct: 30 GYSFRDGGALLLEDALTHSV--HPRDEAGGRARHQRLEFLGDAALGLAFATIFYRDDPGL 87 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD--VCSFMTSIQ--------- 115 +G+L+V ++ VS + ++VA L +R + +D V F S++ Sbjct: 88 DQGDLTVLRSANVSTQKLARVAVRRRLYPLLRRYNCAPQDHEVSRFTKSVEGLYSGDPIE 147 Query: 116 -----ADVVESLIAALYLDGGIEV 134 AD+VE+++ A+YLD +++ Sbjct: 148 GPRVLADIVEAIVGAVYLDSKLDL 171 >gi|75858914|ref|XP_868797.1| hypothetical protein AN9415.2 [Aspergillus nidulans FGSC A4] gi|40747690|gb|EAA66846.1| hypothetical protein AN9415.2 [Aspergillus nidulans FGSC A4] Length = 1073 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 4/127 (3%) Query: 23 LEKAL-THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LE+A+ TH ++ + +Y+RLE LGD + L+ + L++N F G +S LV Sbjct: 120 LERAVFTHPGVAKDSRTTYDRLEILGDAYIELISTKLIWNKFQHIPSGRISQIRELLVKN 179 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL--DGGIEVAGTFV 139 ET ++ A + + V ++L ++ + + D+ E+ +AA+ L G VA T++ Sbjct: 180 ETLAEYATQYGIDKKASVPAELYNQPKRWIKT-KGDIFEAYVAAVILSHPDGYSVAETWL 238 Query: 140 DKYWKQR 146 + W + Sbjct: 239 SELWSPK 245 >gi|51512119|gb|AAU05314.1| pac1 ribonuclease [Schizosaccharomyces pombe] gi|51512121|gb|AAU05315.1| pac1 ribonuclease [Schizosaccharomyces pombe] Length = 363 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 46/101 (45%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD L + ++F+ F EG LS V E+ + AR + +S Sbjct: 172 ERLEFLGDSFFNLFTTRIIFSKFPQMDEGSLSKLRAKFVGNESADKFARLYGFDKTLVLS 231 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 KD + AD E+ + AL LDG E A +V + Sbjct: 232 YSAEKDQLRKSQKVIADTFEAYLGALILDGQEETAFQWVSR 272 >gi|57236094|gb|AAW48724.1| dicer-1 [Aedes aegypti] Length = 2192 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 66/259 (25%), Positives = 110/259 (42%), Gaps = 56/259 (21%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS E +GY + RS L +A+TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1937 YSAFEDSLGYHHS-RSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELD---------------LASFIRVSSD------- 102 G L+ ++LV+ + +A D + F+R+ D Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHIISE 2055 Query: 103 ----LRKDVCSFMTSIQ-----ADVVESLIAALYLDGGIEVAGTFVDKYWK-QRALKSGK 152 + +D C ++ DV ES+ A++LD + +D WK R++ + Sbjct: 2056 EYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMS-----LDAVWKVYRSMMGPE 2110 Query: 153 FRRDA----KTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 + + K+ ++E AKFG PE R R V VE+ G +G Sbjct: 2111 IEQFSNSVPKSPIRELLELEPETAKFG-KPEKLADGR-------RVRVTVEVFGKGTFRG 2162 Query: 204 MDCSKRAAEQVAAAEVLKR 222 + + R A+ AA L++ Sbjct: 2163 IGRNYRIAKCTAAKCALRQ 2181 >gi|19112084|ref|NP_595292.1| double-strand-specific ribonuclease Pac1 [Schizosaccharomyces pombe 972h-] gi|129540|sp|P22192|PAC1_SCHPO RecName: Full=Double-strand-specific pac1 ribonuclease; AltName: Full=Protein hcs gi|4999|emb|CAA38745.1| Pac1 ribonuclease [Schizosaccharomyces pombe] gi|1042212|gb|AAB34897.1| double-strand-specific Pac1 ribonuclease [Schizosaccharomyces pombe] gi|2959372|emb|CAA17926.1| double-strand-specific ribonuclease Pac1 [Schizosaccharomyces pombe] gi|68697667|emb|CAJ14141.1| unnamed protein product [Schizosaccharomyces pombe] Length = 363 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 46/101 (45%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD L + ++F+ F EG LS V E+ + AR + +S Sbjct: 172 ERLEFLGDSFFNLFTTRIIFSKFPQMDEGSLSKLRAKFVGNESADKFARLYGFDKTLVLS 231 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 KD + AD E+ + AL LDG E A +V + Sbjct: 232 YSAEKDQLRKSQKVIADTFEAYLGALILDGQEETAFQWVSR 272 >gi|240277023|gb|EER40533.1| RNase3 domain-containing protein [Ajellomyces capsulatus H143] gi|325094961|gb|EGC48271.1| RNase3 domain-containing protein [Ajellomyces capsulatus H88] Length = 380 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 61/110 (55%), Gaps = 4/110 (3%) Query: 37 QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 +++YER+E LGD + ++ + L+++ F G LS LV ET ++ L Sbjct: 159 EKNYERMELLGDAYIEIIATRLVWDTFPRLPAGRLSQIRELLVKNETLAEYTSLYGLDQK 218 Query: 97 IRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGIEVAGTFVDKYW 143 ++V ++R V ++ T I+ D+ E+ +AA+ L D G+++A ++ + W Sbjct: 219 LQVPPNIRDQVKTW-TKIKGDLFEAYVAAVILSNRDNGVQLAEDWLTQLW 267 >gi|258567596|ref|XP_002584542.1| predicted protein [Uncinocarpus reesii 1704] gi|237905988|gb|EEP80389.1| predicted protein [Uncinocarpus reesii 1704] Length = 1055 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 28/167 (16%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + +++++GY F LL A THSS ++ Y+RLEFLGD +L + L++ + Sbjct: 864 AQIKEKLGYQFKYPKLLRSAFTHSSYPSAWAAVPCYQRLEFLGDSLLDMACVEHLYHRYP 923 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQA------- 116 L+ ++VS + VA +L L +R S+ ++ + +++ I+A Sbjct: 924 DKDPQWLTEHKMAMVSNKFLGCVAVKLGLHPHLRHFSAPIQSQIATYVEEIEAAELESGD 983 Query: 117 ----------------DVVESLIAALYLDGGI--EVAGTFVDKYWKQ 145 D+VE+ I A+++D EV F +++ K+ Sbjct: 984 SPDAWTSTSDPPKCLPDMVEAYIGAIFIDSDFRYEVVEDFFERFLKR 1030 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 49/115 (42%), Gaps = 21/115 (18%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ++YERLEFLGD L + S LF E + V+ LV + + A L L FI Sbjct: 698 KNYERLEFLGDCFLKMATSISLFTMNPDNDEYDFHVKRMCLVCNQNLFKAALNLKLYEFI 757 Query: 98 RVSSDLRKD-VCSFMTSIQ--------------------ADVVESLIAALYLDGG 131 R S R+ +T +Q ADV E+LI A YL GG Sbjct: 758 RSQSFSRRGWYPEGLTLLQGKGQSKTAPENKHALADKTIADVCEALIGASYLSGG 812 >gi|259481091|tpe|CBF74306.1| TPA: nucleolar RNAse III, putative (AFU_orthologue; AFUA_5G04440) [Aspergillus nidulans FGSC A4] Length = 355 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 4/127 (3%) Query: 23 LEKAL-THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LE+A+ TH ++ + +Y+RLE LGD + L+ + L++N F G +S LV Sbjct: 127 LERAVFTHPGVAKDSRTTYDRLEILGDAYIELISTKLIWNKFQHIPSGRISQIRELLVKN 186 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL--DGGIEVAGTFV 139 ET ++ A + + V ++L ++ + + D+ E+ +AA+ L G VA T++ Sbjct: 187 ETLAEYATQYGIDKKASVPAELYNQPKRWIKT-KGDIFEAYVAAVILSHPDGYSVAETWL 245 Query: 140 DKYWKQR 146 + W + Sbjct: 246 SELWSPK 252 >gi|281427125|ref|NP_001163918.1| dicer 1, ribonuclease type III [Xenopus laevis] gi|261826170|gb|ACX94846.1| truncated double-stranded RNA-specific endoribonuclease type III [Xenopus laevis] Length = 1795 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 1/97 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1625 FENFEKKINYQFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1684 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101 G L+ ++LV+ + +A + D + + S Sbjct: 1685 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAIS 1721 >gi|158706456|sp|Q1DKI1|DCL1_COCIM RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease DCL1; Includes: RecName: Full=ATP-dependent helicase DCL1 Length = 1464 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 28/167 (16%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + ++K++GY F LL A TH S ++ Y+RLEFLGD +L + +++ Sbjct: 1188 AQVKKKLGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1247 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQA------- 116 L+ ++VS + VA L L S + S+ L+ + +++ I+A Sbjct: 1248 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1307 Query: 117 ----------------DVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145 D+VE+ I A+++D G EV F K+ K+ Sbjct: 1308 PPDAWTLTSDPPKCLPDMVEAYIGAIFIDSGFSFEVVEEFFQKFLKK 1354 >gi|251764789|sp|Q7XD96|DCL3B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3b; AltName: Full=Dicer-like protein 3b; Short=OsDCL3b Length = 1637 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 30/160 (18%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE ++ Y F+ + LL +A+TH S+ Y+RLEFLGD +L LL++ L+ Sbjct: 1244 LEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVD 1303 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-----------------------LR 104 GEL+ ++LVS E +Q ++ S ++ S L+ Sbjct: 1304 PGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQ 1363 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 C + + D++ES+ A+++D VD W+ Sbjct: 1364 HTTCK-VPKVLGDIMESIAGAVFIDTDFN-----VDMVWE 1397 >gi|309800535|ref|ZP_07694686.1| ribonuclease III [Streptococcus infantis SK1302] gi|308115846|gb|EFO53371.1| ribonuclease III [Streptococcus infantis SK1302] Length = 115 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTP 173 D E+ + AL LD I+ TF+ + + +++G F +D KT LQE V Sbjct: 2 GDAFEAFLGALLLDKDIKTVKTFIYQVMIPK-VEAGDFEMIKDYKTHLQELLQVNGDVDI 60 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+V GP HD F V V + G + G SK+ AEQ AA +++ Sbjct: 61 RYQVISEIGPAHDKMFEVEVLVEGQSLGSGKGRSKKLAEQEAAKNAVEK 109 >gi|331236185|ref|XP_003330752.1| hypothetical protein PGTG_12289 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309309742|gb|EFP86333.1| hypothetical protein PGTG_12289 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1470 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 27/157 (17%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E++I Y F + L +ALTH S + YER E+LGD ++ + I + FD+A Sbjct: 1117 IERKINYVFKEKLFLVQALTHRSANSFLTNCYEREEWLGDAVIDMWIVEHAYKRFDNATA 1176 Query: 69 GELSVRFNSLVSAETCSQVA-RELDLASFIRVSSDLRKDVCS--------------FMTS 113 ELS+ + + +A ++L L FI SD C+ F ++ Sbjct: 1177 DELSLARAKVACNGSLGFLAIKKLGLHEFIMHKSDNFHQACAEAIEAIEPFTKISEFFSN 1236 Query: 114 IQ------------ADVVESLIAALYLDGGIEVAGTF 138 I D +E+++ A+++D G+ + + Sbjct: 1237 INNLFVVFDPPKILNDALEAIVGAVFVDSGLNLPTAY 1273 >gi|303319323|ref|XP_003069661.1| RNase3 domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240109347|gb|EER27516.1| RNase3 domain containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 390 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 1/100 (1%) Query: 29 HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88 H+ + SY+RLE LGD L ++ + L+++ F + G +S LV ET +Q + Sbjct: 158 HAQAPSAVHSSYDRLEILGDAYLEVIATRLIWDRFQTLPAGRMSQIRELLVKNETLAQFS 217 Query: 89 RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 ++++SD+R +M ++ D+ E+ +AA+ L Sbjct: 218 ERYGFDRRVKIASDIRSQAKRWM-KVKGDIFEAYVAAVIL 256 >gi|212537171|ref|XP_002148741.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224] gi|210068483|gb|EEA22574.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224] Length = 1431 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 70/142 (49%), Gaps = 21/142 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFDSA 66 T+ R+G+ S L LT S S +++E+ Y+R EFLGD +L L+ S L + Sbjct: 951 TVLSRVGF-----SNLAHVLTAISASSAHEENDYQRYEFLGDSLLKLITSIHLVVNNPLW 1005 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQ---------- 115 EG LS +++VS + A L L FI S RK S+++ + Sbjct: 1006 HEGMLSAAKDTIVSNGRLYRTALNLGLDRFILTKSFTGRKWRPSYVSQFETVGEEKRELS 1065 Query: 116 ----ADVVESLIAALYLDGGIE 133 ADVVESL+ A +LDGG E Sbjct: 1066 TKTLADVVESLLGAAFLDGGYE 1087 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +E+ +GY F S+L +ALTH S S+ +Y+RLEFLGD +L + FNH + Sbjct: 1127 KLGQMEEMLGYKFNKPSILFEALTHPS-SNDGAPTYQRLEFLGDSLLDHFVVQEFFNHPE 1185 Query: 65 SAKEGELSVRFNSLVSA 81 E+ + ++V+A Sbjct: 1186 KLSHQEMHLMRTAVVNA 1202 >gi|320040901|gb|EFW22834.1| RNase3 domain-containing protein [Coccidioides posadasii str. Silveira] Length = 390 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 1/100 (1%) Query: 29 HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88 H+ + SY+RLE LGD L ++ + L+++ F + G +S LV ET +Q + Sbjct: 158 HAQAPSAVHSSYDRLEILGDAYLEVIATRLIWDRFQTLPAGRMSQIRELLVKNETLAQFS 217 Query: 89 RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 ++++SD+R +M ++ D+ E+ +AA+ L Sbjct: 218 ERYGFDRRVKIASDIRSQAKRWM-KVKGDIFEAYVAAVIL 256 >gi|169608916|ref|XP_001797877.1| hypothetical protein SNOG_07542 [Phaeosphaeria nodorum SN15] gi|160701743|gb|EAT85008.2| hypothetical protein SNOG_07542 [Phaeosphaeria nodorum SN15] Length = 1017 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNH 62 LE IGY F + LL +ALTH+S S + SYERLEFLGD +L +IS L H Sbjct: 714 VLETLIGYTFKKKPLLLEALTHASFSGPHVHCSYERLEFLGDAVLDYIISKRLHAH 769 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 19/146 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +TL + A+ LL +AL S+ + ++Y+RLEFLGD IL + + L Sbjct: 533 TTLLGPVALDSAHSLLLTRALKSSAADGN--DNYQRLEFLGDCILKFIATVHLMAANPKW 590 Query: 67 KEGELSVRFNSLVS------AETCSQVARELDLASFI------RVSSDLRKDVCSFM--- 111 E L+ + +VS A + + R + SF R + DL + + Sbjct: 591 PESHLTAKKGRIVSNGFLARATIAAGLDRFMITKSFTGAKWAPRYAGDLLAETGPAVKEE 650 Query: 112 --TSIQADVVESLIAALYLDGGIEVA 135 + + AD++ESLI A Y GG E A Sbjct: 651 RSSKLIADIIESLIGACYTVGGFEKA 676 >gi|297610684|ref|NP_001064898.2| Os10g0485600 [Oryza sativa Japonica Group] gi|18087887|gb|AAL59041.1|AC087182_24 putative RNA helicase [Oryza sativa Japonica Group] gi|31432753|gb|AAP54346.1| Type III restriction enzyme, res subunit family protein, expressed [Oryza sativa Japonica Group] gi|255679506|dbj|BAF26812.2| Os10g0485600 [Oryza sativa Japonica Group] Length = 1458 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 30/160 (18%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE ++ Y F+ + LL +A+TH S+ Y+RLEFLGD +L LL++ L+ Sbjct: 1107 LEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVD 1166 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-----------------------LR 104 GEL+ ++LVS E +Q ++ S ++ S L+ Sbjct: 1167 PGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQ 1226 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 C + + D++ES+ A+++D VD W+ Sbjct: 1227 HTTCK-VPKVLGDIMESIAGAVFIDTDFN-----VDMVWE 1260 >gi|222613035|gb|EEE51167.1| hypothetical protein OsJ_31945 [Oryza sativa Japonica Group] Length = 1570 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 30/160 (18%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE ++ Y F+ + LL +A+TH S+ Y+RLEFLGD +L LL++ L+ Sbjct: 1176 LEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVD 1235 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-----------------------LR 104 GEL+ ++LVS E +Q ++ S ++ S L+ Sbjct: 1236 PGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQ 1295 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 C + + D++ES+ A+++D VD W+ Sbjct: 1296 HTTCK-VPKVLGDIMESIAGAVFIDTDFN-----VDMVWE 1329 >gi|226295027|gb|EEH50447.1| abhydrolase domain-containing protein [Paracoccidioides brasiliensis Pb18] Length = 723 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 63/113 (55%), Gaps = 4/113 (3%) Query: 37 QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 +++YERLE LGD + + + L+++ F + G LS LV ET ++ A L Sbjct: 180 EKNYERLELLGDAYIEIFATRLVWDTFPRLRAGRLSQIREMLVKNETLAEYATRYGLDRR 239 Query: 97 IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTFVDKYWKQR 146 ++V++++R+ ++ T ++ D+ E+ +AA+ L G+E+ ++ + W R Sbjct: 240 LQVAAEIRRQAKTW-TKVRGDLFEAYVAAVILSHPKRGVEMVEEWLTQLWIPR 291 >gi|302794558|ref|XP_002979043.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii] gi|300153361|gb|EFJ20000.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii] Length = 1686 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +LE ++ Y F NRSLL +A+TH+S + Y+RLEFLGD +L L+S LF Sbjct: 1494 SLEHKLQYKFQNRSLLVEAITHASQPNCLL-CYQRLEFLGDGVLDFLVSRHLFETHPGLP 1552 Query: 68 EGELS 72 G L+ Sbjct: 1553 PGTLT 1557 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 SYE LE LGD L +++ LF +D EG+LS R + Q+A+ +A +IR Sbjct: 1324 SYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRSRATCNAALYQLAKSSGIAEYIR 1383 >gi|323307668|gb|EGA60933.1| Rnt1p [Saccharomyces cerevisiae FostersO] Length = 253 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD IL +++ +++N F EG+LS +LVS E Q + + ++ + Sbjct: 95 ERLEFLGDSILNSVMTLIIYNKFPDYSEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTN 154 Query: 101 SDLRKDVCSFMT---SIQADVVESLIAALYLD 129 DL+ + +F + ADV E+ I L D Sbjct: 155 FDLKDENSNFQNGKLKLYADVFEAYIGGLMED 186 >gi|307133775|ref|NP_001182502.1| endoribonuclease Dicer isoform 2 [Homo sapiens] gi|300517087|gb|ADK25182.1| t-Dicer [Homo sapiens] Length = 1829 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 2/100 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S + + + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDL 103 G L+ ++LV+ + +A + D + + VS +L Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPEL 1765 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372 >gi|158705946|sp|Q0UL22|DCL2_PHANO RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease DCL2; Includes: RecName: Full=ATP-dependent helicase DCL2 Length = 1399 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNH 62 LE IGY F + LL +ALTH+S S + SYERLEFLGD +L +IS L H Sbjct: 1096 VLETLIGYTFKKKPLLLEALTHASFSGPHVHCSYERLEFLGDAVLDYIISKRLHAH 1151 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 19/146 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +TL + A+ LL +AL S+ + ++Y+RLEFLGD IL + + L Sbjct: 915 TTLLGPVALDSAHSLLLTRALKSSAADGN--DNYQRLEFLGDCILKFIATVHLMAANPKW 972 Query: 67 KEGELSVRFNSLVS------AETCSQVARELDLASFI------RVSSDLRKDVCSFM--- 111 E L+ + +VS A + + R + SF R + DL + + Sbjct: 973 PESHLTAKKGRIVSNGFLARATIAAGLDRFMITKSFTGAKWAPRYAGDLLAETGPAVKEE 1032 Query: 112 --TSIQADVVESLIAALYLDGGIEVA 135 + + AD++ESLI A Y GG E A Sbjct: 1033 RSSKLIADIIESLIGACYTVGGFEKA 1058 >gi|154300125|ref|XP_001550479.1| hypothetical protein BC1G_10438 [Botryotinia fuckeliana B05.10] gi|150856727|gb|EDN31919.1| hypothetical protein BC1G_10438 [Botryotinia fuckeliana B05.10] Length = 1398 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 63/215 (29%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ + Y F +SLL +A+TH S + Q S ERLEFLGD IL +I T +++H Sbjct: 1090 VEQILAYTFTKKSLLVEAMTHPSYTSGTQ-SLERLEFLGDSILDNIIVTAMWSHSTPLSH 1148 Query: 69 GELSVRFNSLVSAE----TCSQVA----------------------RELDLASFIRVSS- 101 + + ++LV+A+ C +++ R + L SF+R SS Sbjct: 1149 FHMHLLRSALVNADFLAFLCMEMSIDQNVTNLTEGKNHRIHETHSRRRVSLVSFLRHSSV 1208 Query: 102 --------------DLRKDVC-----------SFMTSIQA-----DVVESLIAALYLD-G 130 +LR + + ++ + A D++ESL+ A+++D G Sbjct: 1209 RLSIYQKEALSRHAELRDQILEAIYTGDTFPWALLSRLDARKFFSDMIESLLGAVWIDSG 1268 Query: 131 GIEVAGTFVDKY----WKQRALKSGKFRRDAKTEL 161 +EV +++ + +R LK G K EL Sbjct: 1269 SMEVCTQLIERMGVLRYMRRILKDGVRIMHPKEEL 1303 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 19/125 (15%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIST-LLFNHFDSAKEGELSVRF 75 +++SL++ A+TH+S +S +Y+RLEFLGD IL L S L+ H D EG LS Sbjct: 964 ISDQSLIQTAITHAS--YSLDSNYQRLEFLGDSILKLCTSVQLVAEHLD-WHEGYLSAMK 1020 Query: 76 NSLVSAETCSQVARELDLASFIRVS------------SDL---RKDVCSFMTSIQADVVE 120 + +VS S+ A E+ L +I DL + + I +DVVE Sbjct: 1021 DRIVSNSRSSRAAAEVGLDEYIMTKKFTGAKWRPMYVDDLVVTEQKTREMSSKILSDVVE 1080 Query: 121 SLIAA 125 +LI A Sbjct: 1081 ALIGA 1085 >gi|302819693|ref|XP_002991516.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii] gi|300140718|gb|EFJ07438.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii] Length = 1719 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +LE ++ Y F NRSLL +A+TH+S + Y+RLEFLGD +L L+S LF Sbjct: 1463 SLEHKLQYKFQNRSLLVEAITHASQPNCLL-CYQRLEFLGDGVLDFLVSRHLFETHPGLP 1521 Query: 68 EGELS 72 G L+ Sbjct: 1522 PGTLT 1526 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 SYE LE LGD L +++ LF +D EG+LS R + Q+A+ +A +IR Sbjct: 1293 SYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRSRATCNAALHQLAKSSGIAEYIR 1352 >gi|195487840|ref|XP_002092062.1| Dcr-2 [Drosophila yakuba] gi|194178163|gb|EDW91774.1| Dcr-2 [Drosophila yakuba] Length = 1730 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1439 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1498 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1499 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1533 >gi|80979119|gb|ABB54762.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1522 >gi|196000070|ref|XP_002109903.1| hypothetical protein TRIADDRAFT_20536 [Trichoplax adhaerens] gi|190588027|gb|EDV28069.1| hypothetical protein TRIADDRAFT_20536 [Trichoplax adhaerens] Length = 190 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 2/70 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ IG F + LL KA TH S ++H Y+RLEFLGD IL ++++ ++ F Sbjct: 121 TDFEESIGVEFKHIRLLAKAFTHPSAGLNHLTIGDYQRLEFLGDAILSYMLASHVYRQFP 180 Query: 65 SAKEGELSVR 74 +EG LSVR Sbjct: 181 HYREGHLSVR 190 Score = 35.8 bits (81), Expect = 4.5, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+LSV ++LV+ + ++ ++L L F+ S + K+ + SI A+ VE+L Sbjct: 2 FPDLSEGDLSVYRSALVNNKQLGRLGKKLKLDEFLAYSHEALKN-NNLDRSI-ANGVEAL 59 Query: 123 IAALYLDGGIE 133 A+YL+ G++ Sbjct: 60 FGAMYLENGLD 70 >gi|80979125|gb|ABB54765.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1522 >gi|80979133|gb|ABB54769.1| Dicer-2 [Drosophila teissieri] Length = 1719 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1522 >gi|80979127|gb|ABB54766.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1522 >gi|80979131|gb|ABB54768.1| Dicer-2 [Drosophila santomea] Length = 1719 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1522 >gi|80979123|gb|ABB54764.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1522 >gi|80979121|gb|ABB54763.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1522 >gi|80979129|gb|ABB54767.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1522 >gi|154276932|ref|XP_001539311.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150414384|gb|EDN09749.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 380 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 61/110 (55%), Gaps = 4/110 (3%) Query: 37 QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 +++YER+E LGD + ++ + L+++ F G LS LV ET ++ L Sbjct: 159 EKNYERMELLGDAYIEIIATRLVWDTFPRLPAGRLSQIRELLVKNETLAEYTSLYGLDQK 218 Query: 97 IRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGIEVAGTFVDKYW 143 ++V ++R + ++ T I+ D+ E+ +AA+ L D G+++A ++ + W Sbjct: 219 LQVPPNIRDQIKTW-TKIKGDLFEAYVAAVILSNRDNGVQLAEDWLTQLW 267 >gi|126177989|ref|YP_001045954.1| ribonuclease III [Methanoculleus marisnigri JR1] gi|125860783|gb|ABN55972.1| RNAse III [Methanoculleus marisnigri JR1] Length = 156 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 5/133 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNH 62 +E+RIGY F +R+LLE+ALT + + + + L LGD ++ + + + Sbjct: 12 GVIEERIGYTFKDRALLERALTRLAYTLEAGIPPETHMDALATLGDAVINVAVVEAVVAG 71 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 K G +S R +LV+ +A +LDLA ++R + A+ +E+L Sbjct: 72 GAHDK-GAISNRKMNLVNMTRLRGLAEDLDLADYVRWGKGEAAQRVWTSGRVLAECLEAL 130 Query: 123 IAALYLDGGIEVA 135 + A+YLDGG++ A Sbjct: 131 VGAVYLDGGMDAA 143 >gi|312069719|ref|XP_003137813.1| hypothetical protein LOAG_02227 [Loa loa] gi|307767024|gb|EFO26258.1| hypothetical protein LOAG_02227 [Loa loa] Length = 1928 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++S LE IGY F +R+ L +A TH+S + Y+RLEFLGD +L +I+ LF H Sbjct: 1660 FQFSKLEDFIGYRFNDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQH 1719 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVA 88 G L+ ++LV+ + +A Sbjct: 1720 SSHYSPGVLTDLRSALVNNTIFASLA 1745 >gi|295657108|ref|XP_002789127.1| abhydrolase domain-containing protein [Paracoccidioides brasiliensis Pb01] gi|226284541|gb|EEH40107.1| abhydrolase domain-containing protein [Paracoccidioides brasiliensis Pb01] Length = 740 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 63/113 (55%), Gaps = 4/113 (3%) Query: 37 QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 +++YERLE LGD + + + L+++ F + G LS LV ET ++ A L Sbjct: 175 EKNYERLELLGDAYIEIFATRLVWDTFPRLRAGRLSQIREMLVKNETLAEYATRYGLDRR 234 Query: 97 IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTFVDKYWKQR 146 ++V++++R+ ++ T ++ D+ E+ +AA+ L G+E+ ++ + W R Sbjct: 235 LQVAAEIRRQAKTW-TKVRGDLFEAYVAAVILSHPKRGVEMVEEWLTQLWIPR 286 >gi|80979117|gb|ABB54761.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G L+ ++LV+ T + + L FI Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1522 >gi|322707759|gb|EFY99337.1| Dicer-like protein 2 [Metarhizium anisopliae ARSEF 23] Length = 1442 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 73/274 (26%), Positives = 112/274 (40%), Gaps = 63/274 (22%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLI-------STLLF 60 LE +GY F +SLL +A+TH S YQ SYE LEF+GD IL +I LL Sbjct: 1158 LEHLVGYQFNKKSLLIEAMTHQSCMFDYQRRSYEHLEFIGDAILDFIIVRKMYTAEPLLA 1217 Query: 61 NH-FDSAKEGELSVRFNSLVSAE-----TCSQVARELDLA----------SFIRVSSD-- 102 H S K ++ F + +S + T + V +L + +F+R SS+ Sbjct: 1218 PHQMHSLKTAMVNADFLAFLSLDHQMRRTETAVTSDLQIVDKETTPLALWTFMRHSSEAI 1277 Query: 103 -------------LRKDVC-----------SFMTSIQA-----DVVESLIAALYLD-GGI 132 LR ++ + + +QA D+ ESL+ A+++D G I Sbjct: 1278 GIEQATTLKRYEALRGEILATLRQGSHYPWALLAGLQAKKFYSDIFESLLGAVWVDSGSI 1337 Query: 133 EVAGTFVDKYWK----QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E+ + K+ R LK + K L + A + T Y V + PD D Sbjct: 1338 ELCECMLQKFGVLSILDRLLKDRVQVQHPKEVLGKMAVTQ---TVTYNVDVQEAPDGDRA 1394 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 FT V + + +D + + AAE R Sbjct: 1395 FTCRVLVGQRVITEVVDGVTKEEVKTKAAEAAIR 1428 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 54/123 (43%), Gaps = 17/123 (13%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 SS S + +YERLEFLGD IL + + EG LS + LVS S+ A Sbjct: 996 SSRSAAEPVNYERLEFLGDSILKYCTAIQVSAIHPEWPEGYLSFFKDRLVSNSRLSRAAI 1055 Query: 90 ELDLASFI-----------------RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 ++ LA FI + + T ADVVE+LI A Y++GGI Sbjct: 1056 DVGLAKFILTKTFTGQKWRPLYLENYTGNPGKVSPRKLSTKTLADVVEALIGASYVNGGI 1115 Query: 133 EVA 135 A Sbjct: 1116 TKA 1118 >gi|121717533|ref|XP_001276079.1| RNase3 domain protein [Aspergillus clavatus NRRL 1] gi|119404277|gb|EAW14653.1| RNase3 domain protein [Aspergillus clavatus NRRL 1] Length = 228 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 6/147 (4%) Query: 27 LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86 TH + +Y+RLE LGD + L+ + L++N F G +S LV ET S+ Sbjct: 6 FTHPGVGKDLNSTYDRLEILGDAYIELIATKLIWNEFKDLSSGRISQMRELLVKNETLSE 65 Query: 87 VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD---GGIEVAGTFVDKYW 143 A S V D + T + D+ ES +AA+ L G VA ++ + W Sbjct: 66 FAALYGFDSRAAVPHDYLNQPKRW-TKTKGDIFESYVAAVILSRPLDGYSVAERWLTQLW 124 Query: 144 --KQRALKSGKFRRDAKTELQEWAHAK 168 K R + R DAK L + AK Sbjct: 125 LPKLRCTALRQPRLDAKEALAKKIMAK 151 >gi|116196272|ref|XP_001223948.1| hypothetical protein CHGG_04734 [Chaetomium globosum CBS 148.51] gi|88180647|gb|EAQ88115.1| hypothetical protein CHGG_04734 [Chaetomium globosum CBS 148.51] Length = 1476 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 17/132 (12%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 E R+GYAF + LL A H + Y++ SY+RLEFLGD +L + LF+ F A Sbjct: 1201 FEARMGYAFTHPRLLRSAFQHPTYPSVYEKLPSYQRLEFLGDALLDMASVEFLFHRFPGA 1260 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV---CSFMTSIQADVVESLI 123 + + + + +L SF R D CS DVVE+ + Sbjct: 1261 DP-----QSKTPCNRHATTPSPGDLPAESFAR-------DFWVRCSRPPKCLPDVVEAYV 1308 Query: 124 AALYLDGGIEVA 135 A+++D + A Sbjct: 1309 GAVFVDSRYDFA 1320 >gi|887620|emb|CAA90210.1| unknown [Saccharomyces cerevisiae] Length = 362 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD IL +++ +++N F EG+LS +LVS E Q + + ++ + Sbjct: 129 ERLEFLGDSILNSVMTLIIYNKFPDYSEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTN 188 Query: 101 SDLRKDVCSFMT---SIQADVVESLIAALYLD 129 DL+ + +F + ADV E+ I L D Sbjct: 189 FDLKDENSNFQNGKLKLYADVFEAYIGGLMED 220 >gi|316961980|gb|EFV48479.1| endoribonuclease Dicer [Trichinella spiralis] Length = 325 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 3/62 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHS---SISHSYQESYERLEFLGDRILGLLISTL 58 +A ++ E +IGY F N++ L +ALTHS + +SYERLEFLGD IL LIS Sbjct: 59 TAYDLNSFEAKIGYRFTNKAYLIQALTHSLYNEVETPVTDSYERLEFLGDAILDYLISRH 118 Query: 59 LF 60 L+ Sbjct: 119 LY 120 >gi|326472405|gb|EGD96414.1| dicer [Trichophyton tonsurans CBS 112818] Length = 1519 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 28/165 (16%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + ++ ++GY F LL A H S + Y+RLEFLGD +L ++ LF + Sbjct: 1236 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQA------- 116 L+ ++VS + +A L+L I +S+ L+ + S+ +QA Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVNLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355 Query: 117 ----------------DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 D+VE+ + A+++D VD+++++ Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNF--DVVDEFFRK 1398 >gi|321475108|gb|EFX86072.1| hypothetical protein DAPPUDRAFT_309030 [Daphnia pulex] Length = 1607 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/254 (24%), Positives = 110/254 (43%), Gaps = 51/254 (20%) Query: 8 TLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + EKR+ Y F N++LL +ALTH+S I + Y+RLEFLGD +L L++ +++ Sbjct: 1350 SFEKRLRYTFKNKALLIEALTHASYIPNRITNCYQRLEFLGDAVLDYLVTRYYYDNPCQY 1409 Query: 67 KEGELSVRFNSLVSAETCSQVA---------RELDLA------SFIRV------------ 99 L+ +++V+ ET + +A + L L+ F+R Sbjct: 1410 TPAILTDLRSAMVNNETFAVMAVQNRFHLYLKHLSLSLNVILDRFVRSQEENGHLLMHNY 1469 Query: 100 -----SSDLRKDVCSFM--TSIQADVVESLIAALYLDGGIEVAGTFVDKYWK------QR 146 +S+ + + S + + D+ ES+ A+++D G+ +D WK Sbjct: 1470 FVLEETSEPHQSLASNIDVPKVLGDIFESVAGAIFVDSGMS-----LDAVWKSYLPFLHD 1524 Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 AL+ KF H ++ +++ +S D R V +EI G +G Sbjct: 1525 ALE--KFNEKIPISALRVLHERYPNALKFR---KSESLADGRLCVAIEIQGTRVFKGAGG 1579 Query: 207 SKRAAEQVAAAEVL 220 + + A+ AA L Sbjct: 1580 NSKTAKSAAAKYAL 1593 >gi|194880776|ref|XP_001974538.1| GG21041 [Drosophila erecta] gi|190657725|gb|EDV54938.1| GG21041 [Drosophila erecta] Length = 1729 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1439 INHYHLENNLGYTFKDRGYLLQALTHPSYPTNRITGCYQELEFIGDAILDFLISVYIFEN 1498 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 + G L+ ++LV+ T + + L FI Sbjct: 1499 NTNMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1533 >gi|225561826|gb|EEH10106.1| dicer-like protein [Ajellomyces capsulatus G186AR] Length = 1502 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 28/163 (17%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 R+GY F LL A TH+S ++ Y+RLEFLGD +L ++ L++H+ Sbjct: 1244 NRLGYYFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEHLYHHYPDRDP 1303 Query: 69 GELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ------------ 115 L+ ++VS + VA +L L + +S+ L + + I+ Sbjct: 1304 QWLTEHKMAMVSNKFLGAVAVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSPDA 1363 Query: 116 -----------ADVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145 D++E+ I A+++D EV F +Y KQ Sbjct: 1364 WTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQ 1406 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 28/131 (21%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ++YERLEFLGD L + S LF E + V+ L+ + A L L F+ Sbjct: 1075 KNYERLEFLGDCFLKMATSISLFAMNPDNDEFDFHVKRMCLICNQNLFNTAVRLKLYEFV 1134 Query: 98 RVS--------------------SDLRKDVCSFMTSIQADVVESLIAALYLDGG------ 131 R S+ ++ + AD+ E+LI A L GG Sbjct: 1135 RTQGFSRRNWYPEGIKLLQGKAKSESAQNKQALGDKTIADICEALIGASLLSGGKACRFD 1194 Query: 132 --IEVAGTFVD 140 ++ FVD Sbjct: 1195 TAVKAVTVFVD 1205 >gi|326481629|gb|EGE05639.1| hypothetical protein TEQG_04648 [Trichophyton equinum CBS 127.97] Length = 1519 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 28/165 (16%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + ++ ++GY F LL A H S + Y+RLEFLGD +L ++ LF + Sbjct: 1236 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQA------- 116 L+ ++VS + +A L+L I +S+ L+ + S+ +QA Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVNLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355 Query: 117 ----------------DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 D+VE+ + A+++D VD+++++ Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNF--DVVDEFFRK 1398 >gi|6323895|ref|NP_013966.1| Rnt1p [Saccharomyces cerevisiae S288c] gi|2500557|sp|Q02555|RNT1_YEAST RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|1185416|gb|AAB04172.1| Rnt1p [Saccharomyces cerevisiae] gi|151945944|gb|EDN64176.1| conserved protein [Saccharomyces cerevisiae YJM789] gi|190408465|gb|EDV11730.1| ribonuclease III [Saccharomyces cerevisiae RM11-1a] gi|256271587|gb|EEU06629.1| Rnt1p [Saccharomyces cerevisiae JAY291] gi|285814244|tpg|DAA10139.1| TPA: Rnt1p [Saccharomyces cerevisiae S288c] gi|323303453|gb|EGA57248.1| Rnt1p [Saccharomyces cerevisiae FostersB] gi|323332152|gb|EGA73563.1| Rnt1p [Saccharomyces cerevisiae AWRI796] Length = 471 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD IL +++ +++N F EG+LS +LVS E Q + + ++ + Sbjct: 238 ERLEFLGDSILNSVMTLIIYNKFPDYSEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTN 297 Query: 101 SDLRKDVCSFMT---SIQADVVESLIAALYLD 129 DL+ + +F + ADV E+ I L D Sbjct: 298 FDLKDENSNFQNGKLKLYADVFEAYIGGLMED 329 >gi|259148825|emb|CAY82070.1| Rnt1p [Saccharomyces cerevisiae EC1118] Length = 471 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD IL +++ +++N F EG+LS +LVS E Q + + ++ + Sbjct: 238 ERLEFLGDSILNSVMTLIIYNKFPDYSEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTN 297 Query: 101 SDLRKDVCSFMT---SIQADVVESLIAALYLD 129 DL+ + +F + ADV E+ I L D Sbjct: 298 FDLKDENSNFQNGKLKLYADVFEAYIGGLMED 329 >gi|320527636|ref|ZP_08028810.1| RNase3 domain protein [Solobacterium moorei F0204] gi|320131957|gb|EFW24513.1| RNase3 domain protein [Solobacterium moorei F0204] Length = 373 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 29/199 (14%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLL---FNH 62 + ++ IGY F N+ LLE+A T S S + E E LEF+GD+ L + I +L F + Sbjct: 8 NDIQNIIGYTFKNQELLEQAFTRRSYSMENGGEHNEVLEFIGDKALDIAIVKILSEEFGY 67 Query: 63 FDSAK----------------------EGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 F+ ++ EGEL+ +V T S L L ++ + Sbjct: 68 FNKSEQRRSNYYYSPKVYDGTFSSDKDEGELTEIKKRIVKKTTLSDAIDNLGLQHYLIMG 127 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAK 158 RK S + D+ E++I A+ LD I + V+ + + G Sbjct: 128 RGDRKKHVERSNSTKEDLFEAIIGAIALDSRWDINMIQETVENMIEIDDI-IGSDEDSYI 186 Query: 159 TELQEWAHAKFGVTPEYKV 177 E+Q W+ + V P+Y V Sbjct: 187 EEIQNWSLKHYDVLPDYSV 205 >gi|327297344|ref|XP_003233366.1| dicer-like protein 1 [Trichophyton rubrum CBS 118892] gi|326464672|gb|EGD90125.1| dicer-like protein 1 [Trichophyton rubrum CBS 118892] Length = 1519 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 28/164 (17%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + ++ ++GY F LL A H S + Y+RLEFLGD +L ++ LF + Sbjct: 1236 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQA------- 116 L+ ++VS + +A L+L I +S+ L+ + S+ +QA Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355 Query: 117 ----------------DVVESLIAALYLDG--GIEVAGTFVDKY 142 D+VE+ + A+++D +V F K+ Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKF 1399 >gi|302662009|ref|XP_003022664.1| hypothetical protein TRV_03185 [Trichophyton verrucosum HKI 0517] gi|291186623|gb|EFE42046.1| hypothetical protein TRV_03185 [Trichophyton verrucosum HKI 0517] Length = 1510 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 28/164 (17%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + ++ ++GY F LL A H S + Y+RLEFLGD +L ++ LF + Sbjct: 1227 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1286 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQA------- 116 L+ ++VS + +A L+L I +S+ L+ + S+ +QA Sbjct: 1287 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1346 Query: 117 ----------------DVVESLIAALYLDG--GIEVAGTFVDKY 142 D+VE+ + A+++D +V F K+ Sbjct: 1347 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKF 1390 >gi|284050833|ref|ZP_06381043.1| ribonuclease III [Arthrospira platensis str. Paraca] Length = 120 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 8/108 (7%) Query: 5 RYSTLEK---RIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 R LEK R+G + ++ LL+ ALTH S+S Q++YE+LEF+GD ++ L S L Sbjct: 12 RQHQLEKLIERLGLSPQHKIAWQLLDLALTHPSVSS--QDNYEQLEFVGDSVVRLAASEL 69 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 LF + +A GE + + LVS ++++ L ++ V +D Sbjct: 70 LFETYPNAPVGEFAAVRSILVSDRILAEISESYGLGRYLLVGGSATRD 117 >gi|302511053|ref|XP_003017478.1| hypothetical protein ARB_04359 [Arthroderma benhamiae CBS 112371] gi|291181049|gb|EFE36833.1| hypothetical protein ARB_04359 [Arthroderma benhamiae CBS 112371] Length = 1510 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 28/164 (17%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + ++ ++GY F LL A H S + Y+RLEFLGD +L ++ LF + Sbjct: 1227 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1286 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQA------- 116 L+ ++VS + +A L+L I +S+ L+ + S+ +QA Sbjct: 1287 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1346 Query: 117 ----------------DVVESLIAALYLDG--GIEVAGTFVDKY 142 D+VE+ + A+++D +V F K+ Sbjct: 1347 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKF 1390 >gi|50294317|ref|XP_449570.1| hypothetical protein [Candida glabrata CBS 138] gi|49528884|emb|CAG62546.1| unnamed protein product [Candida glabrata] Length = 449 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 6/114 (5%) Query: 20 RSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 R + K+L + + S + + ERLEFLGD IL +++ +++N F S EG L+ Sbjct: 190 RVFMHKSLVNDKVYLNESDIIKSNNERLEFLGDSILNTVMTMIIYNKFPSLNEGNLTELR 249 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 LV ET + + +L ++ S+L DV + AD+ E+ I L D Sbjct: 250 KKLVKNETLREWSELYELPKQLK--SNLSPDVDLSTSKTSADIFEAYIGGLMED 301 >gi|323347050|gb|EGA81326.1| Rnt1p [Saccharomyces cerevisiae Lalvin QA23] Length = 441 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD IL +++ +++N F EG+LS +LVS E Q + + ++ + Sbjct: 238 ERLEFLGDSILNSVMTLIIYNKFPDYSEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTN 297 Query: 101 SDLRKDVCSFMT---SIQADVVESLIAALYLD 129 DL+ + +F + ADV E+ I L D Sbjct: 298 FDLKDENSNFQNGKLKLYADVFEAYIGGLMED 329 >gi|316975421|gb|EFV58865.1| putative RNase3 domain protein [Trichinella spiralis] Length = 1903 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 24/149 (16%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDS 65 S E IGY F +RSLL +ALTHS+ ++ + Y+RLEFLGD +L LI+ L+ Sbjct: 1653 SQFEDIIGYRFKDRSLLVQALTHSTYFYNEVTDCYQRLEFLGDAVLDHLITRHLYEDKRM 1712 Query: 66 AKEGELSVRFNSLVSAETCS----QVARELDLASFIRVSSDLRKDVCSFMTSIQ------ 115 G L+ ++L C + + + + I+ +++ ++V + ++ Sbjct: 1713 HSPGMLTDLRSALYFMYLCPGLMMMIEKFVKTLNIIKENANFDREVRVHLLNLYLLEGEE 1772 Query: 116 -------------ADVVESLIAALYLDGG 131 D+ ES+ A+YLD G Sbjct: 1773 ENAEEQVEVPKALGDIFESVAGAIYLDSG 1801 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 19/127 (14%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T S+++ ++ + E LE LGD L + + + + EG+LS+ + ++S Sbjct: 1406 AITASAVAETF--NLEGLEILGDSFLKYVTTVYCYKAYSKMHEGKLSLLRSRMISNYNLY 1463 Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV---DKY 142 ++ + RK++ +M +I+ D ++ + Y+ EV T + DK Sbjct: 1464 KLGK--------------RKNIPQYMIAIKFDPSDTWLPPCYVPLNCEVQDTAIEEEDKL 1509 Query: 143 WKQRALK 149 +QR + Sbjct: 1510 MEQRLMN 1516 >gi|119182644|ref|XP_001242444.1| hypothetical protein CIMG_06340 [Coccidioides immitis RS] Length = 390 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 1/100 (1%) Query: 29 HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88 H+ + SY+RLE LGD L ++ + L+++ F + G +S LV ET +Q + Sbjct: 158 HAQAPSAVHSSYDRLEILGDAYLEVIATRLIWDRFQTLPAGRMSQIRELLVKNETLAQFS 217 Query: 89 RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 +++++D+R +M ++ D+ E+ +AA+ L Sbjct: 218 ERYGFDRRVKIATDIRSQAKRWM-KVKGDIFEAYVAAVIL 256 >gi|195572986|ref|XP_002104476.1| Dicer-1 [Drosophila simulans] gi|194200403|gb|EDX13979.1| Dicer-1 [Drosophila simulans] Length = 1533 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1277 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1336 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ + +A F R S DV IQ + S+ Sbjct: 1337 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSI 1394 >gi|194910778|ref|XP_001982226.1| GG12488 [Drosophila erecta] gi|190656864|gb|EDV54096.1| GG12488 [Drosophila erecta] Length = 2249 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1993 FEVFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2052 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 G L+ ++LV+ + +A F R S DV IQ + Sbjct: 2053 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQE 2105 >gi|167046032|gb|ABZ10547.1| dicer-like protein E [Trichoplax adhaerens] Length = 359 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +++E + Y+F NRSLL ALTH S S SYE+L FLGD +L I L+ + Sbjct: 171 NSVETILNYSFRNRSLLMLALTHKSYSGLESISYEKLAFLGDTLLIYQICLFLYTQYTDY 230 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFMTSIQADVVESL 122 + + + L VA DL F + S +L + +++AD V+S Sbjct: 231 QPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLHKSRELTLQIDEIYQALEADDVQSF 287 >gi|240275432|gb|EER38946.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H143] Length = 495 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 28/163 (17%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 R+GY F LL A TH+S ++ Y+RLEFLGD +L ++ L++H+ Sbjct: 155 NRLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYPDRDP 214 Query: 69 GELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ------------ 115 L+ ++VS + V +L L + +S+ L + + I+ Sbjct: 215 QWLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSPDA 274 Query: 116 -----------ADVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145 D++E+ I A+++D EV F +Y KQ Sbjct: 275 WTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQ 317 >gi|170591572|ref|XP_001900544.1| Type III restriction enzyme, res subunit family protein [Brugia malayi] gi|158592156|gb|EDP30758.1| Type III restriction enzyme, res subunit family protein [Brugia malayi] Length = 1856 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 38/166 (22%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++S LE IGY F +R+ L +A TH+S + Y+RLEFLGD +L +I+ LF H Sbjct: 1588 FQFSKLEDCIGYRFHDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQH 1647 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELD-----LASFIRVSSDLRKDVC--------- 108 G L+ ++LV+ + +A + + +A R+ + K VC Sbjct: 1648 SAHYSPGVLTDLRSALVNNTIFASLAVKYNFHKHFIAMCPRLHHMIEKFVCLCAEKNLSS 1707 Query: 109 ------SFMTSI-----------------QADVVESLIAALYLDGG 131 +M + D+ ES+ A+YLD G Sbjct: 1708 ANFNEEMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSG 1753 >gi|154283385|ref|XP_001542488.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150410668|gb|EDN06056.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 1359 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 28/163 (17%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 R+GY F LL A TH+S ++ Y+RLEFLGD +L ++ L++H+ Sbjct: 1101 NRLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYPDRDP 1160 Query: 69 GELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ------------ 115 L+ ++VS + V +L L + +S+ L + + I+ Sbjct: 1161 QWLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSPDA 1220 Query: 116 -----------ADVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145 D++E+ I A+++D EV F +Y KQ Sbjct: 1221 WTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQ 1263 >gi|241954756|ref|XP_002420099.1| RNAse III, putative; double-stranded ribonuclease, putative [Candida dubliniensis CD36] gi|223643440|emb|CAX42319.1| RNAse III, putative [Candida dubliniensis CD36] Length = 611 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 10/122 (8%) Query: 17 FANRSLLEKA--LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 F +RS + L + + HS+ E RLEF GD IL L++ ++F F + EG+LS Sbjct: 252 FVHRSTVNNKQYLEANQLLHSHNE---RLEFYGDSILNNLVTLIIFKEFPDSAEGDLSKI 308 Query: 75 FNSLVSAETCSQVARE--LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + LV+ +T + A + D R+S ++ K + I ADV E+ I AL L+ G+ Sbjct: 309 RSRLVNNKTLVKFAFQYGFDKKLRTRISENVLK---TGDQKIFADVFEAYIGALALEKGL 365 Query: 133 EV 134 EV Sbjct: 366 EV 367 >gi|258571479|ref|XP_002544543.1| predicted protein [Uncinocarpus reesii 1704] gi|237904813|gb|EEP79214.1| predicted protein [Uncinocarpus reesii 1704] Length = 387 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 SY+RLE LGD L ++ + L+++ F S G +S LV ET +Q + +R Sbjct: 158 SYDRLEILGDAYLEVIATRLIWDRFQSLPPGRISQIRELLVKNETLAQFSERFKFDQLVR 217 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 VS ++R ++ ++ DV E+ AA+ L I Sbjct: 218 VSPEIRSQPKRWV-KVKGDVFEAYAAAVILSDPI 250 >gi|328865990|gb|EGG14376.1| putative RNase III [Dictyostelium fasciculatum] Length = 576 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 26/142 (18%) Query: 16 AFANRSLLEKALTHSSISH----------------SYQESYERLEFLGDRILGLLISTLL 59 +F N LL + TH S + +RLEFLGD IL S L Sbjct: 141 SFENDLLLREIFTHPSSKKINSLNPAEYKLFKDLLPFTTDNQRLEFLGDSILKFCASIYL 200 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS--DLRKDVCSFMTSIQAD 117 F + A EGEL+ R + L + + E + +R SS D++K +AD Sbjct: 201 FFKYPKANEGELTTRRSELTNNTYLLEKCNEWGIIELLRYSSTEDIKKP--------KAD 252 Query: 118 VVESLIAALYLDGGIEVAGTFV 139 V+E++ A++L+ G + F+ Sbjct: 253 VMEAMFGAIFLERGFKEVYRFI 274 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 9/112 (8%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LLE A+T +Y SY+RLEFLGD L ++S L+ F EG LS LV Sbjct: 320 LLEDAITCLG-DQNY--SYQRLEFLGDSYLDGIVSHFLYREFPLENEGFLSQARALLVRN 376 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 E +Q+++ + L + S +F T D+ E+ I + LD +E Sbjct: 377 EALAQISQRIKLYQLVTDPS------ATFSTKRLGDLFEAFIGGVLLDNELE 422 >gi|254584338|ref|XP_002497737.1| ZYRO0F12342p [Zygosaccharomyces rouxii] gi|238940630|emb|CAR28804.1| ZYRO0F12342p [Zygosaccharomyces rouxii] Length = 456 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 6/106 (5%) Query: 27 LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86 LT S + ++ E RLEFLGD +L +I+ +++N F EG+LS +LVS E + Sbjct: 208 LTESEMIKAHNE---RLEFLGDSVLNTVITMIIYNKFPRYTEGQLSKLRMTLVSNERLKE 264 Query: 87 VARELDLASFIRVSSDLRKDVCSFMT---SIQADVVESLIAALYLD 129 L +R + D+ K+ +F + ADV E+ I L D Sbjct: 265 WTFMYGLEKKLRTNFDMTKENANFQQGKRKLYADVFEAYIGGLIED 310 >gi|300709179|ref|XP_002996756.1| hypothetical protein NCER_100079 [Nosema ceranae BRL01] gi|239606080|gb|EEQ83085.1| hypothetical protein NCER_100079 [Nosema ceranae BRL01] Length = 1131 Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSA 66 +EK I Y F N+ +EKA+ H S + E +++LE +GD L L +S +F + A Sbjct: 981 VEKIINYTFKNKGYIEKAMIHPSYKDNIFGSERFQKLELVGDCFLDLKVSDYIFFKYTDA 1040 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLA--SFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 L SLV+ T + + + L SF +S R + ++ D+ E+L Sbjct: 1041 DPETLHTHRKSLVNNHTFAMILFKSGLYDFSFTGLSDQTRDFNNNKVSKCYGDIFEALAG 1100 Query: 125 ALYLD 129 A+ LD Sbjct: 1101 AVILD 1105 >gi|325091272|gb|EGC44582.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H88] Length = 1432 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 28/163 (17%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 R+GY F LL A TH+S ++ Y+RLEFLGD +L ++ L++H+ Sbjct: 1174 NRLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYPDRDP 1233 Query: 69 GELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ------------ 115 L+ ++VS + V +L L + +S+ L + + I+ Sbjct: 1234 QWLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSPDA 1293 Query: 116 -----------ADVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145 D++E+ I A+++D EV F +Y KQ Sbjct: 1294 WTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQ 1336 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 28/131 (21%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ++YERLEFLGD L + S LF E + V+ L+ + A L L F+ Sbjct: 1005 KNYERLEFLGDCFLKMATSISLFAMNPDNDEFDFHVKRMCLICNQNLFNTAVRLKLYEFV 1064 Query: 98 RVS--------------------SDLRKDVCSFMTSIQADVVESLIAALYLDGG------ 131 R S+ ++ + AD+ E+LI A L GG Sbjct: 1065 RTQGFSRRNWYPEGIKLLQGKAKSESAQNKQALGDKTIADICEALIGASLLSGGKACRFD 1124 Query: 132 --IEVAGTFVD 140 ++ FVD Sbjct: 1125 TAVKAVTVFVD 1135 >gi|320037410|gb|EFW19347.1| hypothetical protein CPSG_03731 [Coccidioides posadasii str. Silveira] Length = 1465 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 28/167 (16%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + ++K++GY F LL A TH S ++ Y+RLEFLGD +L + +++ Sbjct: 1189 AQVKKKLGYVFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1248 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQA------- 116 L+ ++VS + VA L L S + S+ L+ + +++ I+A Sbjct: 1249 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1308 Query: 117 ----------------DVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145 D+VE+ I A+++D EV F K+ K+ Sbjct: 1309 SPDAWTLTSDPPKCLPDMVEAYIGAIFIDSNFSFEVVEEFFQKFLKK 1355 >gi|212723814|ref|NP_001131630.1| hypothetical protein LOC100192986 [Zea mays] gi|194692090|gb|ACF80129.1| unknown [Zea mays] Length = 365 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 106/248 (42%), Gaps = 40/248 (16%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTL 58 + +LE + Y+F + SLL +ALTH SYQ Y+RLEFLGD +L + + Sbjct: 110 INVKSLELLLDYSFNDPSLLMEALTHG----SYQIAGTTPCYQRLEFLGDAVLDHIFTDY 165 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF------- 110 ++ + L+ ++ V+ + A + L + SS L K + + Sbjct: 166 FYHQYPECTPELLTDLRSASVNNSCYAHAAVKAGLHKHVLHSSSALHKRMADYLDKFEQS 225 Query: 111 -------------MTSIQADVVESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRRD 156 + + DVVES+ A+Y+D + + K + + + D Sbjct: 226 FSGPSHGWEAGISLPKVLGDVVESIAGAIYIDAKHDKGVVWRSMKRILEPLVTPDTLQND 285 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213 ELQE+ +K G T EY VT +G +VV E+ A SK A++ Sbjct: 286 PVKELQEFCDSK-GYTLEYTVTRDNGVS-----SVVAEVRTEGTTYKATRTGFSKLDAKK 339 Query: 214 VAAAEVLK 221 +AA+ VL+ Sbjct: 340 LAASSVLR 347 >gi|126134051|ref|XP_001383550.1| hypothetical protein PICST_30953 [Scheffersomyces stipitis CBS 6054] gi|126095699|gb|ABN65521.1| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 566 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 65/125 (52%), Gaps = 10/125 (8%) Query: 19 NRSLLEKALTHSSISHS---------YQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 +++L E+ H S+ + ERLEFLGD +L L++ ++++ F SA EG Sbjct: 210 DQTLYERVFVHKSVVNGKTYLDQNDLINSHNERLEFLGDSVLNNLVTLIIYDKFPSASEG 269 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +L+ + L+ T +Q + E ++ +D + + + + AD+ E+ I AL ++ Sbjct: 270 KLTKMRSQLIDNHTLTQFSFEYGFDKRLKTKTD-EEILKTGDQKVYADIFEAYIGALSVE 328 Query: 130 GGIEV 134 G+++ Sbjct: 329 RGLDL 333 >gi|15150411|gb|AAK84929.1| SD01621p [Drosophila melanogaster] Length = 865 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 609 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 668 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 G L+ ++LV+ + +A F R S DV IQ + Sbjct: 669 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQE 721 >gi|195996297|ref|XP_002108017.1| hypothetical protein TRIADDRAFT_52064 [Trichoplax adhaerens] gi|190588793|gb|EDV28815.1| hypothetical protein TRIADDRAFT_52064 [Trichoplax adhaerens] Length = 707 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +++E + Y+F NRSLL ALTH S S SYE+L FLGD +L I L+ + Sbjct: 441 NSVETILNYSFRNRSLLMLALTHKSYSGLESISYEKLAFLGDTLLIYQICLFLYTQYTDY 500 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFMTSIQADVVESL 122 + + + L VA DL F + S +L + +++AD V+S Sbjct: 501 QPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLHKSRELTLQIDEIYQALEADDVQSF 557 >gi|158706444|sp|Q1DW80|DCL2_COCIM RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease DCL2; Includes: RecName: Full=ATP-dependent helicase DCL2 Length = 1478 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 20/134 (14%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F+N SL+ A++ S+ + +Y+RLEFLGD +L L S L EG L++R Sbjct: 1011 GFSNLSLVLTAISSSAAREA--SNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRK 1068 Query: 76 NSLVSAETCSQVARELDLASFIRV------------------SSDLRKDVCSFMTSIQAD 117 ++VS + A + L FI + D+ + T + AD Sbjct: 1069 GNIVSNGYLANAALQTGLDKFILTKPFTGAKWRPSYNTDHINTGDMTEPTREMSTKVLAD 1128 Query: 118 VVESLIAALYLDGG 131 VVE+LI A +DGG Sbjct: 1129 VVEALIGAANIDGG 1142 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 17/96 (17%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI------STLLF 60 S +E +GY F + LL A+TH S S SY+RLEF+GD IL +++ S F Sbjct: 1185 SEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFESPRCF 1243 Query: 61 NHFDSAKEGELSVRFNSLVSAE----TCSQVARELD 92 +HFD + + +LV+A+ C RE D Sbjct: 1244 HHFD------MHLMRTALVNADFLAFLCMNAYREED 1273 >gi|195502701|ref|XP_002098342.1| GE24009 [Drosophila yakuba] gi|194184443|gb|EDW98054.1| GE24009 [Drosophila yakuba] Length = 2250 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1994 FDEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2053 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 G L+ ++LV+ + +A F R S DV IQ + Sbjct: 2054 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQE 2106 >gi|303314275|ref|XP_003067146.1| Type III restriction enzyme, res subunit family protein [Coccidioides posadasii C735 delta SOWgp] gi|240106814|gb|EER25001.1| Type III restriction enzyme, res subunit family protein [Coccidioides posadasii C735 delta SOWgp] Length = 1487 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 28/167 (16%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + ++K++GY F LL A TH S ++ Y+RLEFLGD +L + +++ Sbjct: 1211 AQVKKKLGYVFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1270 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQA------- 116 L+ ++VS + VA L L S + S+ L+ + +++ I+A Sbjct: 1271 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1330 Query: 117 ----------------DVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145 D+VE+ I A+++D EV F K+ K+ Sbjct: 1331 SPDAWTLTSDPPKCLPDMVEAYIGAIFIDSNFSFEVVEEFFQKFLKK 1377 >gi|238881386|gb|EEQ45024.1| conserved hypothetical protein [Candida albicans WO-1] Length = 611 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 14/130 (10%) Query: 16 AFANRSLLEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 N L E+ H S +H ERLEF GD IL L + ++F F + Sbjct: 241 PINNPKLFERVFIHKSTVNNKQYLEANHLLHSHNERLEFYGDSILNNLATLIIFKEFPDS 300 Query: 67 KEGELSVRFNSLVSAETCSQVARE--LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS + LVS +T ++A + D R+S D+ K + I ADV E+ I Sbjct: 301 TEGDLSKIRSKLVSNKTLIKIAFQYGFDKKLRSRISDDVLK---TGDKKIFADVFEAYIG 357 Query: 125 ALYLDGGIEV 134 AL ++ G ++ Sbjct: 358 ALAMERGFDL 367 >gi|119498655|ref|XP_001266085.1| RNase3 domain protein [Neosartorya fischeri NRRL 181] gi|119414249|gb|EAW24188.1| RNase3 domain protein [Neosartorya fischeri NRRL 181] Length = 373 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 4/123 (3%) Query: 27 LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86 TH +S + +Y+RLE LGD + L+ + +++ F+ G++S LV ET S+ Sbjct: 149 FTHPGLSKDSKSTYDRLEILGDAYIELIATRFIWSRFEDISSGQISQIRELLVKNETLSE 208 Query: 87 VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD---GGIEVAGTFVDKYW 143 A L V DL + T + D+ ES +AA+ L G VA ++ + W Sbjct: 209 FATLYGLDGRASVPQDLLNQPRRW-TKTKGDIFESYVAAIILSRPTDGYHVAERWLTQLW 267 Query: 144 KQR 146 R Sbjct: 268 LPR 270 >gi|170099920|ref|XP_001881178.1| predicted protein [Laccaria bicolor S238N-H82] gi|164643857|gb|EDR08108.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1469 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 20/111 (18%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLLFNH 62 +E +GY F ++ LL +ALTH+S YQ+ SYER+EFLGD IL ++++ L+ Sbjct: 1158 VESMLGYTFNHKLLLIEALTHAS----YQQDQYTSSSYERMEFLGDSILDMIVTDYLYRA 1213 Query: 63 FDSAKE---GELSVRFNSLVSAE----TCSQVARELDLASFIRVSSDLRKD 106 KE G + +R +++V+A C + D AS R S D + D Sbjct: 1214 --PGKEYSPGHMHLRKSAVVNAHFLAFICLRTCLHFD-ASMPRPSPDSQGD 1261 >gi|156371137|ref|XP_001628622.1| predicted protein [Nematostella vectensis] gi|156215603|gb|EDO36559.1| predicted protein [Nematostella vectensis] Length = 261 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 36/159 (22%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDS 65 +E +GY F +R +L +ALTH+S +Y SYE+LEFLGD +L L++ + F Sbjct: 9 VEASLGYTFRDRDILLQALTHTSYPRAYSSVNSSYEQLEFLGDALLDYLVTRHVLQRFPR 68 Query: 66 AKEGELSVRFNSLVSAET--CSQVARELD-------------LASFIRVSSDL-----RK 105 G ++ +++V+ + C + R+ + F+R S++ R Sbjct: 69 LSPGAITDLRSAVVNNYSLACLTIQRDFHKHMRSMSMALFKVVRRFVRRLSEIEEKETRP 128 Query: 106 DVCSFMT-------------SIQADVVESLIAALYLDGG 131 D T + D+ E+L+ ALY+D G Sbjct: 129 DQLLLTTVEDGRGGEAIEVPKVLGDLFEALLGALYVDCG 167 >gi|315044595|ref|XP_003171673.1| hypothetical protein MGYG_06219 [Arthroderma gypseum CBS 118893] gi|311344016|gb|EFR03219.1| hypothetical protein MGYG_06219 [Arthroderma gypseum CBS 118893] Length = 1518 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 28/164 (17%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + ++ ++GY F LL A H S + Y+RLEFLGD +L ++ LF + Sbjct: 1236 NQIKSKLGYCFRYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQA------- 116 L+ ++VS + +A L+L I +S+ L+ + S+ +QA Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355 Query: 117 ----------------DVVESLIAALYLDG--GIEVAGTFVDKY 142 D+VE+ + A+++D +V F K+ Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAMFVDSNFNFDVVDDFFRKF 1399 >gi|195331135|ref|XP_002032258.1| GM23619 [Drosophila sechellia] gi|194121201|gb|EDW43244.1| GM23619 [Drosophila sechellia] Length = 2249 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1993 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2052 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 G L+ ++LV+ + +A F R S DV IQ + Sbjct: 2053 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQE 2105 >gi|17738129|ref|NP_524453.1| Dicer-1 [Drosophila melanogaster] gi|51316117|sp|Q9VCU9|DCR1_DROME RecName: Full=Endoribonuclease Dcr-1; Short=Protein dicer-1 gi|7300916|gb|AAF56056.1| Dicer-1 [Drosophila melanogaster] Length = 2249 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1993 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2052 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 G L+ ++LV+ + +A F R S DV IQ + Sbjct: 2053 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQE 2105 >gi|119190771|ref|XP_001245992.1| hypothetical protein CIMG_05433 [Coccidioides immitis RS] Length = 1435 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 20/134 (14%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F+N SL+ A++ S+ + +Y+RLEFLGD +L L S L EG L++R Sbjct: 968 GFSNLSLVLTAISSSAAREA--SNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRK 1025 Query: 76 NSLVSAETCSQVARELDLASFIRV------------------SSDLRKDVCSFMTSIQAD 117 ++VS + A + L FI + D+ + T + AD Sbjct: 1026 GNIVSNGYLANAALQTGLDKFILTKPFTGAKWRPSYNTDHINTGDMTEPTREMSTKVLAD 1085 Query: 118 VVESLIAALYLDGG 131 VVE+LI A +DGG Sbjct: 1086 VVEALIGAANIDGG 1099 Score = 48.1 bits (113), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 17/96 (17%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI------STLLF 60 S +E +GY F + LL A+TH S S SY+RLEF+GD IL +++ S F Sbjct: 1142 SEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFESPRCF 1200 Query: 61 NHFDSAKEGELSVRFNSLVSAE----TCSQVARELD 92 +HFD + + +LV+A+ C RE D Sbjct: 1201 HHFD------MHLMRTALVNADFLAFLCMNAYREED 1230 >gi|299747526|ref|XP_001837094.2| hypothetical protein CC1G_00230 [Coprinopsis cinerea okayama7#130] gi|298407559|gb|EAU84711.2| hypothetical protein CC1G_00230 [Coprinopsis cinerea okayama7#130] Length = 1499 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 35/167 (20%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E IG+ F LL + LTH+S+ S +YERLEF+GD IL ++ +F+ + Sbjct: 1213 VEGIIGHRFQQPHLLAQILTHTSVHGSKVLTYERLEFIGDAILDFMVIRHIFDRERTLSP 1272 Query: 69 GELSVRFNSLVSAETCSQVA------RELDLASFIRVSSDL---------RKD------- 106 G L++ ++V+ T + V + L S+ ++SS + R D Sbjct: 1273 GGLTMLKGAMVANSTLATVCILSGIYKHLVFGSY-QLSSAIEDYAEAINERADKEYALAE 1331 Query: 107 -----VCSFMTSIQ-----ADVVESLIAALYLDGGIEVAGT--FVDK 141 F I+ +DV+ES+I ALY+ GT F DK Sbjct: 1332 QENRMPGQFWPDIEPPKALSDVIESIIGALYISDNFCPVGTEAFFDK 1378 Score = 41.6 bits (96), Expect = 0.083, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 2/89 (2%) Query: 11 KRIGYAFANRSLLEKAL--THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 K + F + ++ E+ L +++S + +YERLE LGD L L S ++F + E Sbjct: 958 KELNMQFFDNAIDEELLYMATTTVSAEMEHNYERLELLGDAFLKYLASVVVFVMNPTQNE 1017 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI 97 G L V L+S + A ++ L ++I Sbjct: 1018 GSLHVARQRLISNKALLACATQVGLPAYI 1046 >gi|170049284|ref|XP_001855187.1| endoribonuclease Dicer [Culex quinquefasciatus] gi|167871117|gb|EDS34500.1| endoribonuclease Dicer [Culex quinquefasciatus] Length = 1665 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 36/166 (21%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E+ + Y F +R+ L +ALTH+S ++ SY++LEF+GD +L LIS ++ + Sbjct: 1413 IERILDYTFKDRTYLLQALTHASYPTNRITGSYQQLEFVGDAVLDFLISAYIYEQNPTMS 1472 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ------------ 115 G+L+ ++LV+ T + + L +I S D S + Q Sbjct: 1473 PGQLTDLRSALVNNITLACILVRHGLHLYILSESASLTDTVSKFVAFQEAHKHEITDQVN 1532 Query: 116 -----------------------ADVVESLIAALYLDGGIEVAGTF 138 DV ESLI A++LD G ++ T+ Sbjct: 1533 LLSEESERCQGAMAEFVDVPKALGDVFESLIGAVFLDSGNDLEVTW 1578 >gi|167046034|gb|ABZ10548.1| dicer-like protein E [Placozoa sp. DMJ-2008] Length = 359 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +++E + Y+F NRSLL ALTH S S SYE+L FLGD +L I L+ + Sbjct: 171 NSVETILNYSFRNRSLLMLALTHKSYSGLESISYEKLAFLGDTLLIYQIYLFLYTQYTDY 230 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFMTSIQADVVESL 122 + + + L VA DL F + S +L + +++AD V+S Sbjct: 231 QPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLHKSRELTLQIDEIYQALEADDVQSF 287 >gi|303315249|ref|XP_003067632.1| Type III restriction enzyme, res subunit family protein [Coccidioides posadasii C735 delta SOWgp] gi|240107302|gb|EER25487.1| Type III restriction enzyme, res subunit family protein [Coccidioides posadasii C735 delta SOWgp] Length = 1448 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 20/134 (14%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F+N SL+ A++ S+ + +Y+RLEFLGD +L L S L EG L++R Sbjct: 968 GFSNLSLVLTAISSSAAREA--SNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRK 1025 Query: 76 NSLVSAETCSQVARELDLASFIRV------------------SSDLRKDVCSFMTSIQAD 117 ++VS + A + L FI + D+ + T + AD Sbjct: 1026 GNVVSNGYLANAALQTGLDKFILTKPFTGAKWRPSYNTDHINTGDMTEPTREMSTKVLAD 1085 Query: 118 VVESLIAALYLDGG 131 VVE+LI A +DGG Sbjct: 1086 VVEALIGAANIDGG 1099 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 17/96 (17%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL------F 60 S +E +GY F + LL A+TH S S SY+RLEF+GD IL +++ L F Sbjct: 1142 SEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFESPRGF 1200 Query: 61 NHFDSAKEGELSVRFNSLVSAE----TCSQVARELD 92 +HFD + + +LV+A+ C RE D Sbjct: 1201 HHFD------MHLMRTALVNADFLAFLCMNAYREED 1230 >gi|296817299|ref|XP_002848986.1| RNase3 domain-containing protein [Arthroderma otae CBS 113480] gi|238839439|gb|EEQ29101.1| RNase3 domain-containing protein [Arthroderma otae CBS 113480] Length = 378 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 7/130 (5%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F + ++E+ S S ++SY+RLE LGD + L+ + L++ +F + G+++ Sbjct: 125 FTHTGIVERGPGSSLCS---EKSYDRLEVLGDAYIELISTRLIWENFPTLPAGKMAQARE 181 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD---GGIE 133 ++V ET +Q A ++ +SD R V T I+ DV E+ +AA + G+ Sbjct: 182 TMVKNETLAQYATAYGFDELLKTTSDYR-SVPKRWTKIRGDVFEAYVAAAIISDPKDGLR 240 Query: 134 VAGTFVDKYW 143 +++ + W Sbjct: 241 AVESWLTQLW 250 >gi|312376926|gb|EFR23879.1| hypothetical protein AND_11908 [Anopheles darlingi] Length = 994 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S S + + Y+RLEFLGD IL LI+ L+ Sbjct: 711 FEVFERSLGYHFQDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRR 770 Query: 65 SAKEGELSVRFNSLVS 80 G L+ ++LV+ Sbjct: 771 QHSPGALTDLRSALVN 786 >gi|305354766|emb|CBL30926.1| Dicer protein [Echinococcus multilocularis] Length = 1981 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 19/116 (16%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH-----------------SYQESYERLEFLG 47 R+S LE+ IGY F NR LL +A THS+ S YERLEFLG Sbjct: 1695 RFSKLEEIIGYTFKNRRLLIEAFTHSTCRDLHGPPSDDDGGFHGSVTSISGGYERLEFLG 1754 Query: 48 DRILGLLISTLLFNHFDSAK--EGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101 D +L ++ LF +A+ G L+ ++LV+ +A L +F+R ++ Sbjct: 1755 DAVLDYAVTRFLFTTDATARLSPGALTDLRSALVNNVVFGALAVRHGLHAFLRAAA 1810 >gi|195391256|ref|XP_002054279.1| GJ24359 [Drosophila virilis] gi|194152365|gb|EDW67799.1| GJ24359 [Drosophila virilis] Length = 2250 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F++RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1994 FEEFESSLGYTFSDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2053 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 G L+ ++LV+ + +A + R S DV IQ + Sbjct: 2054 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQE 2106 >gi|194744012|ref|XP_001954492.1| GF18290 [Drosophila ananassae] gi|190627529|gb|EDV43053.1| GF18290 [Drosophila ananassae] Length = 2252 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1996 FEEFEASLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2055 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ + +A F R S DV IQ + S+ Sbjct: 2056 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSI 2113 >gi|116788280|gb|ABK24820.1| unknown [Picea sitchensis] Length = 330 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/252 (23%), Positives = 107/252 (42%), Gaps = 47/252 (18%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNH 62 +RY LE + Y+F +L+ +++TH+S S+ Y+RLEFLGD +L LI+ + Sbjct: 82 VRY--LESLLKYSFRVHTLVVESVTHASYKEPSFSGCYQRLEFLGDAVLDYLITLYFYKT 139 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF----------- 110 + G L+ ++ V+ + +Q A + +L +R SS+L + F Sbjct: 140 YPGLSPGLLTDLRSAAVNNDCYAQAAVKCNLHQQLRHASSELHNQITEFAKLISSSSASG 199 Query: 111 ------------MTSIQADVVESLIAALYLDGGIEV------AGTFVDKYWKQRALKSGK 152 + + D++ES+ A+ +D + ++ + +K Sbjct: 200 DHFFGWTTTEVAVPKVLGDLIESIAGAVLVDSEFDTQLVWNAMKPLLEPLVTPKTIKYQP 259 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC---SKR 209 R ELQE +F Y F + TV VE+ + C +KR Sbjct: 260 VR-----ELQELCQKEF-----YTCCFDDSQEEGTS-TVKVEVRVKGDSYIETCEASNKR 308 Query: 210 AAEQVAAAEVLK 221 A+++AA +VLK Sbjct: 309 TAKKLAAEKVLK 320 >gi|170090528|ref|XP_001876486.1| predicted protein [Laccaria bicolor S238N-H82] gi|164647979|gb|EDR12222.1| predicted protein [Laccaria bicolor S238N-H82] Length = 356 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 9/108 (8%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV- 99 E+ E LGD ++GL +++L+F + + G + +V T ++++ L +R+ Sbjct: 105 EKYEHLGDTVIGLSVTSLMFEMYPGLRVGPSTKIRAMIVGNFTLAEISLRYKLPDRLRLH 164 Query: 100 ---SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 S LR T+IQADV ES + LYLD G+E +++ ++ Sbjct: 165 PAQSITLRAS-----TNIQADVFESFVGGLYLDQGLEAVKAWLNPLFR 207 >gi|54020492|ref|YP_115922.1| ribonuclease III [Mycoplasma hyopneumoniae 232] gi|53987665|gb|AAV27866.1| ribonuclease III [Mycoplasma hyopneumoniae 232] Length = 183 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 67/125 (53%), Gaps = 10/125 (8%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI---RV 99 LEFLGD ++ +S +++++F + +R + L S + + +++ L +++ R Sbjct: 2 LEFLGDSVINYAVSKVIYDNFYKNEGNSTQIR-SLLTSTSSLANATKKVGLMNYVLLGRG 60 Query: 100 SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAK 158 +S++R++ ++AD+ ES AA+ LD G E F+ +Y +K + K +D K Sbjct: 61 ASEIREN-----NKLKADIFESFCAAILLDQGFEKLNEFLSEYLYKDVNFDTEKQYKDPK 115 Query: 159 TELQE 163 + QE Sbjct: 116 SIFQE 120 >gi|125773725|ref|XP_001358121.1| GA18437 [Drosophila pseudoobscura pseudoobscura] gi|54637856|gb|EAL27258.1| GA18437 [Drosophila pseudoobscura pseudoobscura] Length = 2280 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 1/113 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 2024 FEEFEASLGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2083 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 G L+ ++LV+ + +A F R S DV IQ + Sbjct: 2084 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQE 2136 >gi|195143531|ref|XP_002012751.1| GL23778 [Drosophila persimilis] gi|194101694|gb|EDW23737.1| GL23778 [Drosophila persimilis] Length = 2278 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 1/113 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 2022 FEEFEASLGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2081 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 G L+ ++LV+ + +A F R S DV IQ + Sbjct: 2082 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQE 2134 >gi|159468548|ref|XP_001692436.1| dicer-like protein [Chlamydomonas reinhardtii] gi|158278149|gb|EDP03914.1| dicer-like protein [Chlamydomonas reinhardtii] Length = 3556 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 9/116 (7%) Query: 15 YAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 Y F L +ALTH +SH Y+RLEFLGD ++G ++S LF SA+ Sbjct: 3277 YCFRRPELCLQALTH--VSHPRAAGCGGGYQRLEFLGDAVMGTVVSFWLFRAGGSAE--A 3332 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQADVVESLIAA 125 ++ R +LVS + A L L +RV SS L + +F+ +QA + + +A+ Sbjct: 3333 MTARRKALVSNGPLAAAAVCLGLQRHLRVGSSALLGTLGAFVEEVQAALEDGSLAS 3388 >gi|167046039|gb|ABZ10551.1| dicer 2 [Nematostella vectensis] Length = 1162 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 3/67 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDS 65 +E +GY F +R +L +ALTH+S +Y SYE+LEFLGD +L L++ + F Sbjct: 938 VEASLGYTFRDRDILLQALTHTSYPRAYSSVNSSYEQLEFLGDALLDYLVTRHVLQRFPR 997 Query: 66 AKEGELS 72 G ++ Sbjct: 998 LSPGAIT 1004 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +L+ +ALT +S + +ERLE GD + IS LL++ F + EG LS VS Sbjct: 582 TLILRALTTTSANDIID--HERLEIYGDAFIKYAISELLYSDFPNVNEGRLSFLRGLRVS 639 Query: 81 AETCSQVARELDLASFI 97 + + R LA I Sbjct: 640 NQQLFYLGRSRGLAPLI 656 >gi|167046028|gb|ABZ10545.1| dicer-like protein D [Trichoplax adhaerens] Length = 351 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 67/166 (40%), Gaps = 47/166 (28%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S + + Y F N L A THSS++ E+Y+RLE+LGD IL L+ ++ Sbjct: 174 SCILRNTDYQFNNFYWLRIAFTHSSVA---SENYQRLEYLGDAILEYLLIEFVYCRKPYF 230 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ----------- 115 G++S + + +T S +A + IR S L+ D+ M SIQ Sbjct: 231 GPGKISHFKSVMTRNQTFSLIAIAFQFYTHIRCHSKLKLDI---MDSIQNFKEILLDNHQ 287 Query: 116 ------------------------------ADVVESLIAALYLDGG 131 ADV E+ IAA+YLD G Sbjct: 288 DDHQPDIGHFANLAYQLYTSNRYQKLPKVCADVFEAFIAAIYLDCG 333 >gi|321460750|gb|EFX71789.1| hypothetical protein DAPPUDRAFT_326825 [Daphnia pulex] Length = 204 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 19/130 (14%) Query: 9 LEKRIGYAFANRSLLEKALTH--SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LEK +GY F N+ L+ ALTH S+ + + +R E LGD+ LG LI + + + Sbjct: 38 LEKILGYEFQNKDNLKLALTHTISNPTKCPSKDSDRSESLGDKFLGALIMVNCYKTYPTY 97 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFI-------RVSSDLRKDVCSFMTSIQADVV 119 GEL+ +L S TC+ L + + I R+S ++ + AD+ Sbjct: 98 GAGELA----NLTSMITCNDTFAVLAVPALIPTTIPGERISIEID------YPKVYADLF 147 Query: 120 ESLIAALYLD 129 E++ A++Y+D Sbjct: 148 EAVAASIYVD 157 >gi|302896162|ref|XP_003046961.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI 77-13-4] gi|256727889|gb|EEU41248.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI 77-13-4] Length = 1452 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 40/210 (19%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +GY F +LL A H S + +Y+RLEFLGD +L + I LF F A L+ Sbjct: 1161 VGYRFKWPALLRSAFKHPSWPYDPVPNYQRLEFLGDALLDMAIVDNLFQRFPQADPQWLT 1220 Query: 73 VRFNSLVSAETCSQVARELDL--------ASFI-RVSS----------DLRKDVCSFMTS 113 ++ S + + +LDL +S I ++SS D R++ + T+ Sbjct: 1221 EHKMAMASNQFLGCLCVKLDLHKHLTSTTSSLIGQISSYASELELAEEDARQEAKANKTA 1280 Query: 114 IQ--------------ADVVESLIAALYLDGGIEVA------GTFVDKYWKQRALKSGKF 153 ++ ADV+E+L+ A+++D + F++ Y++ AL Sbjct: 1281 MRKDFWLRASAPPKAFADVMEALVGAMFVDAKYDYTVVRNFFTRFIEPYFEDMALYDSFA 1340 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + T L + G T ++V+ + P Sbjct: 1341 NKHPVTYLSKKMQQDLGCT-NWRVSAENVP 1369 >gi|255934909|ref|XP_002558481.1| Pc13g00300 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583101|emb|CAP91099.1| Pc13g00300 [Penicillium chrysogenum Wisconsin 54-1255] Length = 144 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 72/137 (52%), Gaps = 6/137 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +SA +E + Y F ++SLL+KA + + + ++R +GD L L+++ L + Sbjct: 5 LSAESIRAIESILNYEFHDKSLLDKAFEAPGATEA-RGGHQRQALIGDAALKLVLTELGY 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +A GE+++ S VS E ++ L L ++ R++ + V S+ A +E Sbjct: 64 E--GNASTGEITISRGSRVSNENLKRLGESLGLNAYFRLNPASQGVVPR---SMMATTME 118 Query: 121 SLIAALYLDGGIEVAGT 137 ++I A+YLD G ++A T Sbjct: 119 AIIGAVYLDSGKDMATT 135 >gi|85105148|ref|XP_961898.1| hypothetical protein NCU08270 [Neurospora crassa OR74A] gi|74616659|sp|Q7S8J7|DCL1_NEUCR RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl-1; Includes: RecName: Full=ATP-dependent helicase dcl-1 gi|28923482|gb|EAA32662.1| predicted protein [Neurospora crassa OR74A] Length = 1584 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 3/108 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +R+GY F + LL A H + Y+ SY+RLEFLGD + ++ LF F +A Sbjct: 1263 ERMGYKFKHPRLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFPAADP 1322 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ 115 L+ ++VS + ++ L I +S + KD+ ++T I+ Sbjct: 1323 QWLTEHKMAMVSNQFLCCLSFHLGFNKCIATMSPSILKDIAEYVTEIE 1370 Score = 38.1 bits (87), Expect = 0.94, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 46/112 (41%), Gaps = 20/112 (17%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ++YERLEFLGD L + + ++ E E V L+ + A E+ L +I Sbjct: 1096 DNYERLEFLGDSFLKMATTIAIYTLIPDKGEFEYHVERMLLICNKNLFNNALEIGLEEYI 1155 Query: 98 RV-------------------SSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 R S D R+ SI ADV E+LI A YL G Sbjct: 1156 RSMSFNRRQWYPEGLILKKGKSKDARQRHVLADKSI-ADVCEALIGAAYLTG 1206 >gi|260945020|ref|XP_002616808.1| hypothetical protein CLUG_04049 [Clavispora lusitaniae ATCC 42720] gi|238850457|gb|EEQ39921.1| hypothetical protein CLUG_04049 [Clavispora lusitaniae ATCC 42720] Length = 406 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 17/149 (11%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD +L L++ +L+ F A EG LS +SLVS +T ++ + + +R Sbjct: 92 ERLEFLGDSVLNTLVTFILYEKFPFANEGLLSQIRSSLVSNKTLAEFSTQYGFDQSLRCK 151 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL------------ 148 D + + I AD+ E+ + AL ++ G ++ + W + + Sbjct: 152 VD-ESALRNGKQKIFADIFEAYVGALAMERGFDMNEV---QQWLKALMASKLSEADLAIK 207 Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 K+ +DAKTEL + P YKV Sbjct: 208 KATPINKDAKTELYSLVGTA-SLHPIYKV 235 >gi|158705874|sp|A4RHU9|DCL2_MAGO7 RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease DCL2; Includes: RecName: Full=ATP-dependent helicase DCL2 Length = 1485 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 2/61 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+ +GY+F +SLL +A+TH+S I S S ERLEFLGD +L ++ LF+ D A Sbjct: 1171 LEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPA 1230 Query: 67 K 67 Sbjct: 1231 P 1231 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 13/110 (11%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +YER+EFLGD +L L + + EG LS+ + LVS + A L L FI Sbjct: 1022 NYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLLKDRLVSNSRLCKAATALGLDQFII 1081 Query: 99 VSSDLRKDVCSFMTSIQ-------------ADVVESLIAALYLDGGIEVA 135 K + +T+ + ADV E+LI A Y++GG+ A Sbjct: 1082 TRQYSLKQWRNMLTAPEPPTNTRKMSSKTLADVTEALIGAAYIEGGMSKA 1131 >gi|58382645|ref|XP_312076.2| AGAP002836-PA [Anopheles gambiae str. PEST] gi|55241936|gb|EAA07793.2| AGAP002836-PA [Anopheles gambiae str. PEST] Length = 2256 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S S + + Y+RLEFLGD IL LI+ L+ Sbjct: 1979 FEEFEQALGYRFRDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRR 2038 Query: 65 SAKEGELSVRFNSLVS 80 G L+ ++LV+ Sbjct: 2039 QHSPGALTDLRSALVN 2054 >gi|268325168|emb|CBH38756.1| conserved hypothetical protein, containing RNase3 and AIR carboxylase domain [uncultured archaeon] gi|268326276|emb|CBH39864.1| conserved hypothetical protein, containing RNase3 and AIR carboxylase domain [uncultured archaeon] Length = 421 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 71/143 (49%), Gaps = 7/143 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSIS------HSYQESYERLEFLGDRILGLLISTLLFN 61 T+E+ I Y+F ++++L +ALT + + + E E LGD +L ++ LL Sbjct: 277 TIEENIRYSFLDKNILNRALTRKAYALEQRQRNQACEDQEIFRTLGDAVLKAVLVDLLIK 336 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +E E++ + L E+ +++ REL + I + +K + + A+ E+ Sbjct: 337 SGCKTRE-EITRKKIELEREESLAKIGRELGIGESIMLGVGEKKQRANEEPYVLAETFEA 395 Query: 122 LIAALYLDGGIEVAGTFVDKYWK 144 +I A+YLDG ++A + +K Sbjct: 396 VIGAIYLDGCYDIAKKIITNLFK 418 >gi|222629185|gb|EEE61317.1| hypothetical protein OsJ_15421 [Oryza sativa Japonica Group] Length = 1632 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 39/64 (60%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ IGY F ++ LL +A H S S Y++ EFLGD +L +I++ L++ + K Sbjct: 1185 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQKTEFLGDAVLEYVITSYLYSTYPDIKP 1244 Query: 69 GELS 72 G+++ Sbjct: 1245 GQIT 1248 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 19/125 (15%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL-ASFIRV 99 +RLEFLGD +L +I++ L++ + K G+++ + V ++ + A E + I+ Sbjct: 1308 KRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKD 1367 Query: 100 SSDLRKDVCSFMTSIQ------------------ADVVESLIAALYLDGGIEVAGTFVDK 141 S+ L + F ++ D+VES I A+ LD G + + + Sbjct: 1368 SNHLTSAISKFEMYVKLSNSEKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKNY 1427 Query: 142 YWKQR 146 +K R Sbjct: 1428 GYKHR 1432 Score = 35.4 bits (80), Expect = 5.3, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 9/74 (12%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPAQGMDC------ 206 + A++ L E A + PE+K+ GP H +FT VVVEI G A A ++C Sbjct: 1543 KTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKG-ASATLLECHSDGKL 1601 Query: 207 SKRAAEQVAAAEVL 220 K+AA++ AA L Sbjct: 1602 QKKAAQEHAAQGAL 1615 >gi|145612483|ref|XP_367242.2| hypothetical protein MGG_12357 [Magnaporthe oryzae 70-15] gi|145019642|gb|EDK03870.1| hypothetical protein MGG_12357 [Magnaporthe oryzae 70-15] Length = 1386 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 2/61 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+ +GY+F +SLL +A+TH+S I S S ERLEFLGD +L ++ LF+ D A Sbjct: 1072 LEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPA 1131 Query: 67 K 67 Sbjct: 1132 P 1132 Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 13/110 (11%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +YER+EFLGD +L L + + EG LS+ + LVS + A L L FI Sbjct: 923 NYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLLKDRLVSNSRLCKAATALGLDQFII 982 Query: 99 VSSDLRKDVCSFMTSIQ-------------ADVVESLIAALYLDGGIEVA 135 K + +T+ + ADV E+LI A Y++GG+ A Sbjct: 983 TRQYSLKQWRNMLTAPEPPTNTRKMSSKTLADVTEALIGAAYIEGGMSKA 1032 >gi|289619621|emb|CBI53904.1| unnamed protein product [Sordaria macrospora] Length = 1586 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 3/108 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +R+GY F + LL A H + Y+ SY+RLEFLGD + ++ LF F +A Sbjct: 1263 ERMGYKFKHPRLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFPAADP 1322 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ 115 L+ ++VS + ++ L + +S + KD+ ++T I+ Sbjct: 1323 QWLTEHKMAMVSNQFLCCLSYHLGFYKCVATMSPSILKDIAEYVTEIE 1370 >gi|261190414|ref|XP_002621616.1| RNase3 domain-containing protein [Ajellomyces dermatitidis SLH14081] gi|239591039|gb|EEQ73620.1| RNase3 domain-containing protein [Ajellomyces dermatitidis SLH14081] gi|239614955|gb|EEQ91942.1| RNase3 domain-containing protein [Ajellomyces dermatitidis ER-3] gi|327356568|gb|EGE85425.1| hypothetical protein BDDG_08370 [Ajellomyces dermatitidis ATCC 18188] Length = 382 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 9/125 (7%) Query: 27 LTHSSISHSY-----QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LTH I + +++YER+E LGD + ++ + L+++ F G LS LV Sbjct: 144 LTHEGIHNPNTASLSEKNYERMELLGDAYIEIMATRLVWDTFPRLPAGRLSQIRELLVKN 203 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGIEVAGTF 138 ET ++ L + V ++R ++ T ++ D+ E+ +AA+ L D G+++ + Sbjct: 204 ETLAEYTTLYGLDQKLMVPPEIRNQAKTW-TKVKGDLFEAYVAAVILSNRDNGVQLVEDW 262 Query: 139 VDKYW 143 + + W Sbjct: 263 LTQLW 267 >gi|29424049|gb|AAO73809.1| dicer-1 [Anopheles gambiae] Length = 2259 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S S + + Y+RLEFLGD IL LI+ L+ Sbjct: 1982 FEEFEQALGYRFRDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRR 2041 Query: 65 SAKEGELSVRFNSLVS 80 G L+ ++LV+ Sbjct: 2042 QHSPGALTDLRSALVN 2057 >gi|327349134|gb|EGE77991.1| dicer [Ajellomyces dermatitidis ATCC 18188] Length = 1482 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 6/65 (9%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---- 61 + +E +GY+F + L +A TH S S SY+RLEF+GD IL +I LFN Sbjct: 1151 FQEIESLLGYSFNKKVFLVQAFTHPSNPGSTTSSYQRLEFVGDAILDHIIVHHLFNSSRN 1210 Query: 62 --HFD 64 HFD Sbjct: 1211 LPHFD 1215 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 20/134 (14%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 AF + SL+ A++ S + +Y+R+EFLGD IL + L EG LS Sbjct: 977 AFTDLSLVVTAISASVAREA--TNYQRIEFLGDSILKFHTTLQLSAANLVWHEGLLSRAK 1034 Query: 76 NSLVSAETCSQVARELDLASFIRV------------------SSDLRKDVCSFMTSIQAD 117 +++VS + S A E L FI V S + T AD Sbjct: 1035 DNVVSNKRLSYAAVETGLDKFILVDVFTGAKWRPRYNKVHLESEEQGIPQREMTTKTLAD 1094 Query: 118 VVESLIAALYLDGG 131 VVE+L+ A ++GG Sbjct: 1095 VVEALLGAATIEGG 1108 >gi|240276002|gb|EER39515.1| dicer-like protein [Ajellomyces capsulatus H143] Length = 800 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---- 61 + +E +GY F + L +A TH S S SY+RLEF+GD IL +I LFN Sbjct: 461 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVYHLFNAPRI 520 Query: 62 --HFD 64 HFD Sbjct: 521 LPHFD 525 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 20/134 (14%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 AF + SL+ A++ S+ + +Y+R+EFLGD IL + L EG LS Sbjct: 287 AFTDLSLVITAISASAAREA--TNYQRIEFLGDSILKFQTTLQLTAANPIWHEGLLSRAK 344 Query: 76 NSLVSAETCSQVARELDLASFIRVS--------SDLRKDVCS----------FMTSIQAD 117 +++VS + S A E L FI + KD T AD Sbjct: 345 DTVVSNKRLSYAAIETGLDKFILLDVFTGAKWRPPCNKDHLESEEQGVPQREMSTKTLAD 404 Query: 118 VVESLIAALYLDGG 131 VVE+L+AA LDGG Sbjct: 405 VVEALLAAATLDGG 418 >gi|239610437|gb|EEQ87424.1| dicer-like protein 2 [Ajellomyces dermatitidis ER-3] Length = 1509 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 6/65 (9%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---- 61 + +E +GY+F + L +A TH S S SY+RLEF+GD IL +I LFN Sbjct: 1177 FQEIESLLGYSFNKKVFLVQAFTHPSNPGSTTSSYQRLEFVGDAILDHIIVHHLFNSSRN 1236 Query: 62 --HFD 64 HFD Sbjct: 1237 LPHFD 1241 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 20/134 (14%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 AF + SL+ A++ S + +Y+R+EFLGD IL + L EG LS Sbjct: 1003 AFTDLSLVVTAISASVAREA--TNYQRIEFLGDSILKFHTTLQLSAANLVWHEGLLSRAK 1060 Query: 76 NSLVSAETCSQVARELDLASFIRV------------------SSDLRKDVCSFMTSIQAD 117 +++VS + S A E L FI V S + T AD Sbjct: 1061 DNVVSNKRLSYAAVETGLDKFILVDVFTGAKWRPRYNKVHLESEEQGIPQREMTTKTLAD 1120 Query: 118 VVESLIAALYLDGG 131 VVE+L+ A ++GG Sbjct: 1121 VVEALLGAATIEGG 1134 >gi|302687578|ref|XP_003033469.1| hypothetical protein SCHCODRAFT_37756 [Schizophyllum commune H4-8] gi|300107163|gb|EFI98566.1| hypothetical protein SCHCODRAFT_37756 [Schizophyllum commune H4-8] Length = 1343 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 9/77 (11%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLLFNHF 63 +E+ +GY F ++LL +ALTH+S YQE SY RLEFLGD +L + ++ +F Sbjct: 1130 VERMLGYTFERKALLIEALTHAS----YQEPLPTPSYGRLEFLGDAVLDMAVTPYIFASK 1185 Query: 64 DSAKEGELSVRFNSLVS 80 + G + +R ++ V+ Sbjct: 1186 KNYSPGHIHLRRSAAVN 1202 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 33/124 (26%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA---------- 88 +Y+RLE +GD +L L+S L+ + EG L+ + + VS ++++ Sbjct: 973 NYQRLETMGDTVLKYLVSIQLYAEYPLWHEGYLAKQKDHTVSNVRLAKISVRRHIFQWII 1032 Query: 89 RELDL---------------ASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGG 131 RE + + ++++S+L +T S+ ADV+ESLI A Y+ GG Sbjct: 1033 REKNKPKKKKKKDNNQLSTKGTVLKITSEL------LLTKLSVLADVIESLIGAAYVHGG 1086 Query: 132 IEVA 135 + + Sbjct: 1087 LSLG 1090 >gi|241061224|ref|XP_002408099.1| dicer-1, putative [Ixodes scapularis] gi|215492368|gb|EEC02009.1| dicer-1, putative [Ixodes scapularis] Length = 1348 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E+ +GY F +RS L +A+TH+S + + Y+RLEFLGD ++ L++ L+ Sbjct: 1069 VERALGYTFVDRSFLLQAVTHASYYRNRLTDCYQRLEFLGDAVIDYLVTRYLYELPRKFN 1128 Query: 68 EGELSVRFNSLVS 80 G+L+ +SLV+ Sbjct: 1129 PGQLTDLRSSLVN 1141 >gi|324500060|gb|ADY40039.1| Endoribonuclease dcr-1 [Ascaris suum] Length = 1970 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++S LE I Y F +R+ L +A TH+S + Y+RLEFLGD +L +I+ LF H Sbjct: 1701 FQFSKLEDSICYRFKDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQH 1760 Query: 63 FDSAKEGELSVRFNSLVS 80 G L+ ++LV+ Sbjct: 1761 PRQYSPGVLTDLRSALVN 1778 >gi|261195592|ref|XP_002624200.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081] gi|239588072|gb|EEQ70715.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081] Length = 1509 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 6/65 (9%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---- 61 + +E +GY+F + L +A TH S S SY+RLEF+GD IL +I LFN Sbjct: 1177 FQEIESLLGYSFNKKVFLVQAFTHPSNPGSTTSSYQRLEFVGDAILDHIIVHHLFNSSRN 1236 Query: 62 --HFD 64 HFD Sbjct: 1237 LPHFD 1241 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 20/134 (14%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 AF + SL+ A++ S + +Y+R+EFLGD IL + L EG LS Sbjct: 1003 AFTDLSLVVTAISASVAREA--TNYQRIEFLGDSILKFHTTLQLSAANLVWHEGLLSRAK 1060 Query: 76 NSLVSAETCSQVARELDLASFIRV------------------SSDLRKDVCSFMTSIQAD 117 +++VS + S A E L FI V S + T AD Sbjct: 1061 DNVVSNKRLSYAAVETGLDKFILVDVFTGAKWRPRYNKVHLESEEQGIPQREMTTKTLAD 1120 Query: 118 VVESLIAALYLDGG 131 VVE+L+ A ++GG Sbjct: 1121 VVEALLGAATIEGG 1134 >gi|317150438|ref|XP_001824024.2| dicer-like protein 1 [Aspergillus oryzae RIB40] gi|158706453|sp|Q2U6C4|DCL1_ASPOR RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent helicase dcl1 Length = 1523 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+++GY F LL A TH S ++ + Y+RLEFLGD +L ++ LF + Sbjct: 1244 VEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPDK 1303 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIAA 125 L+ ++VS + +A +L L + +R S+ L+ + + IQA ES A Sbjct: 1304 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENESQGAV 1363 Query: 126 LY 127 Y Sbjct: 1364 DY 1365 >gi|325093360|gb|EGC46670.1| dicer-like protein [Ajellomyces capsulatus H88] Length = 1436 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---- 61 + +E +GY F + L +A TH S S SY+RLEF+GD IL +I LFN Sbjct: 1097 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVYHLFNAPRT 1156 Query: 62 --HFD 64 HFD Sbjct: 1157 LPHFD 1161 Score = 42.0 bits (97), Expect = 0.058, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 20/134 (14%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 AF + SL+ A++ S+ + +Y+R+EFLGD IL + L EG LS Sbjct: 923 AFTDLSLVITAISASAAREA--TNYQRIEFLGDSILKFQTTLQLTAANPIWHEGLLSRAK 980 Query: 76 NSLVSAETCSQVARELDLASFIRVS--------SDLRKDVCS----------FMTSIQAD 117 +++VS + S A E L FI + KD T AD Sbjct: 981 DTVVSNKRLSYAAIETGLDKFILLDVFTGAKWRPPCNKDHLESEEQGVPQREMSTKTLAD 1040 Query: 118 VVESLIAALYLDGG 131 VVE+L+AA LDGG Sbjct: 1041 VVEALLAAATLDGG 1054 >gi|321458470|gb|EFX69538.1| hypothetical protein DAPPUDRAFT_329028 [Daphnia pulex] Length = 1597 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 60/254 (23%), Positives = 111/254 (43%), Gaps = 38/254 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFN-HF 63 + TLE+ + + F NR L +A +H+S H+ S Y+RLEFLGD + LI+ L++ Sbjct: 1348 FETLERSLNFRFGNRFYLLQAFSHASYHHNRMTSCYQRLEFLGDAVFDYLITKYLYDCRL 1407 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDL---------RKDVCSFMTS 113 G LS ++LV+ T + +A +++ + D+ ++++C T Sbjct: 1408 FQLTPGALSDMRSALVNNVTFAVLAVRNGFHRYLKHLVPDVHQAIDRFVQQQEMCDHATP 1467 Query: 114 ---------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 + D+ ESL+ A++LD + + + Y R Sbjct: 1468 DEFFLIGTHDDPMAEAVEVPKVLGDIFESLVGAVFLDSDMSLDAVWRVFYPLIRQEIEAC 1527 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAA 211 R K+ ++ + K+ ++K T + PD R + VE+ + +G+ + R A Sbjct: 1528 TRVVPKSPIRT-IYEKYPGKVQFK-TLENLPDG--RICIAVEVLNNGRLYKGVGKNSRIA 1583 Query: 212 EQVAAAEVLKREGI 225 + AA L + GI Sbjct: 1584 KNTAAKYALSQLGI 1597 >gi|297804712|ref|XP_002870240.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata] gi|297316076|gb|EFH46499.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata] Length = 214 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 17/143 (11%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 L +LEK + Y F ++ LL +A T +S +SYE LE LGD IL + I + Sbjct: 28 LEIESLEKILNYKFKDKRLLVQAFTDASYVDDKCDSYEILELLGDSILNMSIIDEFIKLY 87 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQ------- 115 G L+ V E ++VA + L ++R L + + F+ +++ Sbjct: 88 PKESPGPLTKLRAVNVDTEKLARVAVKHQLYRYLRHKKPLLEEQILEFVEAMEKYPLHSN 147 Query: 116 ---------ADVVESLIAALYLD 129 AD+VES I AL+ D Sbjct: 148 GLLKVPKVLADIVESTIGALFRD 170 >gi|145612491|ref|XP_001412113.1| hypothetical protein MGG_07167 [Magnaporthe oryzae 70-15] gi|145019646|gb|EDK03874.1| hypothetical protein MGG_07167 [Magnaporthe oryzae 70-15] Length = 819 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 2/60 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+ +GY+F +SLL +A+TH+S I S S ERLEFLGD +L ++ LF+ D A Sbjct: 505 LEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPA 564 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 13/110 (11%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +YER+EFLGD +L L + + EG LS+ + LVS + A L L FI Sbjct: 356 NYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLLKDRLVSNSRLCKAATALGLDQFII 415 Query: 99 VSSDLRKDVCSFMTSIQ-------------ADVVESLIAALYLDGGIEVA 135 K + +T+ + ADV E+LI A Y++GG+ A Sbjct: 416 TRQYSLKQWRNMLTAPEPPTNTRKMSSKTLADVTEALIGAAYIEGGMSKA 465 >gi|89114028|gb|ABD61605.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEKFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 G L+ ++LV+ + +A F R S DV Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038 >gi|109390419|gb|ABG33778.1| double-strand-specific Pac1 ribonuclease [Schizosaccharomyces pombe] Length = 363 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 45/101 (44%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD L + ++F+ F E LS V E+ + AR + +S Sbjct: 172 ERLEFLGDSFFNLFTTRIIFSKFPQMDEESLSKLRAKFVGNESADKFARLYGFDKTLVLS 231 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 KD + AD E+ + AL LDG E A +V + Sbjct: 232 YSAEKDQLRKSQKVIADTFEAYLGALILDGQEETAFQWVSR 272 >gi|154282055|ref|XP_001541840.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150412019|gb|EDN07407.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 1437 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---- 61 + +E +GY F + L +A TH S S SY+RLEF+GD IL +I LFN Sbjct: 1097 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVHHLFNAPRA 1156 Query: 62 --HFD 64 HFD Sbjct: 1157 LPHFD 1161 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 62/139 (44%), Gaps = 30/139 (21%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGL-----LISTLLFNHFDSAKEGE 70 AF + SL+ A++ S + +Y+R+EFLGD IL L +T L H EG Sbjct: 923 AFTDLSLVITAISASVAREA--TNYQRIEFLGDSILKFQTTLQLTATNLIWH-----EGL 975 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVS--------SDLRKDVCS----------FMT 112 LS +++VS + S A E L FI + KD T Sbjct: 976 LSRAKDTVVSNKRLSYAAIEAGLDKFILLDVFTGAKWRPPYNKDHLESEEQGVAQREMST 1035 Query: 113 SIQADVVESLIAALYLDGG 131 ADVVE+L+AA LDGG Sbjct: 1036 KTLADVVEALLAAATLDGG 1054 >gi|89114044|gb|ABD61613.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 G L+ ++LV+ + +A F R S DV Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038 >gi|238503379|ref|XP_002382923.1| nucleolar RNAse III, putative [Aspergillus flavus NRRL3357] gi|83771529|dbj|BAE61661.1| unnamed protein product [Aspergillus oryzae] gi|220691733|gb|EED48081.1| nucleolar RNAse III, putative [Aspergillus flavus NRRL3357] Length = 234 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 5/126 (3%) Query: 22 LLEKAL-THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +LE+A+ TH +S+ +++Y+RLE LGD + L+ + L++ F G +S LV Sbjct: 4 VLERAVFTHPGVSNDTEKTYDRLEILGDAYIELIATKLIWKRFREIPSGRISQIRELLVK 63 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD---GGIEVAGT 137 ET ++ A L V D + + T +AD+ E+ +AA + G V Sbjct: 64 NETLAEYAAGYGLDRKAAVPQDYLRQSKRW-TKTRADIFEAYVAAAIISHPVDGYRVVEN 122 Query: 138 FVDKYW 143 ++ + W Sbjct: 123 WLTQLW 128 >gi|156845983|ref|XP_001645880.1| hypothetical protein Kpol_1045p6 [Vanderwaltozyma polyspora DSM 70294] gi|156116550|gb|EDO18022.1| hypothetical protein Kpol_1045p6 [Vanderwaltozyma polyspora DSM 70294] Length = 478 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 3/92 (3%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD +L +++ +++N F + EG+LS +LVS E + ++ + Sbjct: 226 ERLEFLGDSVLNTIMTMIIYNKFPTFTEGQLSKLRMNLVSNERIKSWTYLYNFDKKLKTN 285 Query: 101 SDLRKDVCSFMTSIQ---ADVVESLIAALYLD 129 DL D F Q ADV E+ I L D Sbjct: 286 FDLGNDKSHFQNGKQKLYADVFEAYIGGLIED 317 >gi|89114038|gb|ABD61610.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 G L+ ++LV+ + +A F R S DV Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038 >gi|89114030|gb|ABD61606.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 G L+ ++LV+ + +A F R S DV Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038 >gi|89114048|gb|ABD61615.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 G L+ ++LV+ + +A F R S DV Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038 >gi|89114042|gb|ABD61612.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 G L+ ++LV+ + +A F R S DV Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038 >gi|225563402|gb|EEH11681.1| dicer-like protein [Ajellomyces capsulatus G186AR] Length = 1436 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---- 61 + +E +GY F + L +A TH S S SY+RLEF+GD IL +I LFN Sbjct: 1097 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVYHLFNAPRT 1156 Query: 62 --HFD 64 HFD Sbjct: 1157 FPHFD 1161 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 20/134 (14%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 AF + SL+ A++ S + +Y+R+EFLGD IL + L EG LS Sbjct: 923 AFTDLSLVITAISASVAREA--TNYQRIEFLGDSILKFQTTLQLTAANPIWHEGLLSRAK 980 Query: 76 NSLVSAETCSQVARELDLASFIRVS----------------SDLRKDVCS--FMTSIQAD 117 +++VS + S A E L FI + +DV T AD Sbjct: 981 DTVVSNKRLSYAAIETGLDKFILLDVFTGAKWRPPCNKDHLESEEQDVPQREMSTKTLAD 1040 Query: 118 VVESLIAALYLDGG 131 VVE+L+AA LDGG Sbjct: 1041 VVEALLAAATLDGG 1054 >gi|89114022|gb|ABD61602.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 G L+ ++LV+ + +A F R S DV Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038 >gi|89114050|gb|ABD61616.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 G L+ ++LV+ + +A F R S DV Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038 >gi|89114036|gb|ABD61609.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 G L+ ++LV+ + +A F R S DV Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038 >gi|195996287|ref|XP_002108012.1| hypothetical protein TRIADDRAFT_52058 [Trichoplax adhaerens] gi|190588788|gb|EDV28810.1| hypothetical protein TRIADDRAFT_52058 [Trichoplax adhaerens] Length = 915 Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 67/166 (40%), Gaps = 47/166 (28%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S + + Y F N L A THSS++ E+Y+RLE+LGD IL L+ ++ Sbjct: 652 SCILRNTDYQFNNFYWLRIAFTHSSVA---SENYQRLEYLGDAILEYLLIEFVYCRKPYF 708 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ----------- 115 G++S + + +T S +A + IR S L+ D+ M SIQ Sbjct: 709 GPGKISHFKSVMTRNQTFSLIAIAFQFYTHIRCHSKLKLDI---MDSIQNFKEILLDNHQ 765 Query: 116 ------------------------------ADVVESLIAALYLDGG 131 ADV E+ IAA+YLD G Sbjct: 766 DDHQPDIGHFANLAYQLYTSNRYQKLPKVCADVFEAFIAAIYLDCG 811 >gi|89114032|gb|ABD61607.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 G L+ ++LV+ + +A F R S DV Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038 >gi|225554674|gb|EEH02970.1| RNase3 domain-containing protein [Ajellomyces capsulatus G186AR] Length = 380 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 4/110 (3%) Query: 37 QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 +++YER+E LGD + ++ + L+++ F G LS LV ET ++ L Sbjct: 159 EKNYERMELLGDAYIEIIATRLVWDTFPRLPAGRLSQIRELLVKNETLAEYTSLYGLDQK 218 Query: 97 IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTFVDKYW 143 ++V ++R D T I+ D+ E+ +AA+ L G+++A ++ + W Sbjct: 219 LQVPPNIR-DQAKTWTKIKGDLFEAYVAAVILSNREYGVQLAEDWLTQLW 267 >gi|89114046|gb|ABD61614.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 G L+ ++LV+ + +A F R S DV Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038 >gi|89114024|gb|ABD61603.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 G L+ ++LV+ + +A F R S DV Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038 >gi|89114040|gb|ABD61611.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 G L+ ++LV+ + +A F R S DV Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038 >gi|89114034|gb|ABD61608.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 G L+ ++LV+ + +A F R S DV Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038 >gi|89114020|gb|ABD61601.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 G L+ ++LV+ + +A F R S DV Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038 >gi|321454554|gb|EFX65720.1| hypothetical protein DAPPUDRAFT_117031 [Daphnia pulex] Length = 322 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 20/140 (14%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLL 59 ++ + L ++IGY F N++LL +A+THS+ + + S E E LGD LG + Sbjct: 66 TSFSLTALPEKIGYKFRNKNLLGRAMTHSTANQTKCPSQDGENFEVLGDVALGNFFAMAR 125 Query: 60 FNHF----------DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 NH + +G+LS+ L SA TC+ +L I + R + Sbjct: 126 VNHTVVLELLLDLNPNYNQGQLSL----LKSAITCNDTFADL---VIIPSAEGYRANEID 178 Query: 110 FMTSIQADVVESLIAALYLD 129 + I AD E+LI AL +D Sbjct: 179 Y-PEIYADAFEALIGALRID 197 >gi|68477460|ref|XP_717201.1| probable ribonuclease III [Candida albicans SC5314] gi|46438903|gb|EAK98227.1| probable ribonuclease III [Candida albicans SC5314] Length = 611 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 14/124 (11%) Query: 22 LLEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 L E+ H S +H ERLEF GD IL L + ++F F + EG+LS Sbjct: 247 LFERVFIHKSTVNNKQYLEANHLLHSHNERLEFYGDSILNNLATLIIFKEFPDSTEGDLS 306 Query: 73 VRFNSLVSAETCSQVARE--LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 + LVS +T ++A + D R+S D+ K + I ADV E+ I AL ++ Sbjct: 307 KIRSKLVSNKTLIKIAFQYGFDKKLRSRISDDVLK---TGDKKIFADVFEAYIGALAMER 363 Query: 131 GIEV 134 G ++ Sbjct: 364 GFDL 367 >gi|195109134|ref|XP_001999145.1| GI24348 [Drosophila mojavensis] gi|193915739|gb|EDW14606.1| GI24348 [Drosophila mojavensis] Length = 2256 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 1/113 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 2000 FEEFEASLGYTFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2059 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 G L+ ++LV+ + +A + R S DV IQ + Sbjct: 2060 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQE 2112 >gi|328770756|gb|EGF80797.1| hypothetical protein BATDEDRAFT_24696 [Batrachochytrium dendrobatidis JAM81] Length = 1641 Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E++IGY F +++LL +ALTHS + ++RLEFLGD +L L L+ Sbjct: 1292 IEEQIGYTFRDKTLLWEALTHSG-TGKLGSMFQRLEFLGDAVLSYLAMQHLYKITPPLNP 1350 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR 98 G LS LV + + V+ ++ L +IR Sbjct: 1351 GGLSKLRAELVCNQFLACVSIQIGLVKYIR 1380 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 12/134 (8%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 A LL+ A T S+ + Y SYERLE LGD L + S LF EG ++ + Sbjct: 1116 ATPKLLQIATTSSASNMGY--SYERLETLGDSFLKIHQSLHLFCRNPFKNEGWMTQQRIK 1173 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ----------ADVVESLIAALY 127 + + Q A + L FI +++ +I+ A +E++I A Sbjct: 1174 IEKNQVLHQKALDAGLQHFILTKPLTKRNWVPPAKNIRLNQEISNKTLAGSIEAVIGACV 1233 Query: 128 LDGGIEVAGTFVDK 141 +GG+E A V + Sbjct: 1234 EEGGVEQAALAVSR 1247 >gi|195037032|ref|XP_001989969.1| GH18503 [Drosophila grimshawi] gi|193894165|gb|EDV93031.1| GH18503 [Drosophila grimshawi] Length = 2254 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 1/113 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1998 FEEFEASLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2057 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 G L+ ++LV+ + +A + R S DV IQ + Sbjct: 2058 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQE 2110 Score = 36.2 bits (82), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS Sbjct: 1714 VGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYMTYENVHEGKLS 1771 >gi|296434189|tpg|DAA12515.1| TPA_exp: Dicer 1 protein [Naumovia castellii] Length = 610 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 19/217 (8%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 AF +RSL + + + + S ERLEFLGD LG L++ +++ + A EG LS Sbjct: 124 AFIHRSLPNMNVKLTELQKTVM-SNERLEFLGDSWLGALVAYIIYKKYPYANEGALSKMK 182 Query: 76 NSLVSAETCSQVARELD----LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-- 129 ++V+ ++ +L L I SS KD +T AD VE+ I AL +D Sbjct: 183 EAIVNNNNLEKICEKLGFKERLKENIPRSSMKIKD---RLTKNYADCVEAYIGALVIDRF 239 Query: 130 -GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY-----KVTFRSGP 183 ++++ ++ ++ G K L + A + G ++ K++++ Sbjct: 240 STEFNDVALWLEELSEEHFIELGPMM--VKEPLNKNAKGELGAFLQFNNIGAKISYKRLN 297 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 D P F V V + G + R AEQ AA E L Sbjct: 298 DKSP-FKVEVRLGNNLLGIGDGSNVREAEQRAAMEAL 333 >gi|320035561|gb|EFW17502.1| RNA helicase/RNAse III [Coccidioides posadasii str. Silveira] Length = 1448 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 20/134 (14%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F+N SL+ A++ S+ + +Y+RLEFLGD +L L S L EG L++R Sbjct: 968 GFSNLSLVLTAISSSAAREA--SNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRK 1025 Query: 76 NSLVSAETCSQVARELDLASFIRV------------------SSDLRKDVCSFMTSIQAD 117 ++VS + A + L FI + ++ + T + AD Sbjct: 1026 GNVVSNGYLANAALQTGLDKFILTKPFTGAKWRPSYNTDHINTGNMTEPTREMSTKVLAD 1085 Query: 118 VVESLIAALYLDGG 131 VVE+LI A +DGG Sbjct: 1086 VVEALIGAANIDGG 1099 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 17/96 (17%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL------F 60 S +E +GY F + LL A+TH S S SY+RLEF+GD IL +++ L F Sbjct: 1142 SEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFESPRGF 1200 Query: 61 NHFDSAKEGELSVRFNSLVSAE----TCSQVARELD 92 +HFD + + +LV+A+ C RE D Sbjct: 1201 HHFD------MHLMRTALVNADFLAFLCMNAYREED 1230 >gi|68477301|ref|XP_717277.1| probable ribonuclease III [Candida albicans SC5314] gi|46438981|gb|EAK98304.1| probable ribonuclease III [Candida albicans SC5314] Length = 611 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 14/124 (11%) Query: 22 LLEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 L E+ H S +H ERLEF GD IL L + ++F F + EG+LS Sbjct: 247 LFERVFIHKSTVNNKQYLEANHLLHSHNERLEFYGDSILNNLATLIIFKEFPDSTEGDLS 306 Query: 73 VRFNSLVSAETCSQVARE--LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 + LVS +T ++A + D R+S D+ K + I ADV E+ I AL ++ Sbjct: 307 KIRSKLVSNKTLIKIAFQYGFDKKLRSRISDDVLK---TGDKKIFADVFEAYIGALAMER 363 Query: 131 GIEV 134 G ++ Sbjct: 364 GFDL 367 >gi|189199432|ref|XP_001936053.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983152|gb|EDU48640.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 1439 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 +EK +GY F N++LL +ALTH + + SYER EFLGD +L ++S LF H Sbjct: 1126 VEKLLGYKFTNKALLLEALTHVTFRGLNTNCSYERHEFLGDAVLDYIVSRRLFAH 1180 >gi|195443910|ref|XP_002069632.1| GK11626 [Drosophila willistoni] gi|194165717|gb|EDW80618.1| GK11626 [Drosophila willistoni] Length = 2281 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 1/113 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 2025 FEEFEAILGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2084 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 G L+ ++LV+ + +A F R S DV IQ + Sbjct: 2085 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQE 2137 >gi|171689324|ref|XP_001909602.1| hypothetical protein [Podospora anserina S mat+] gi|170944624|emb|CAP70735.1| unnamed protein product [Podospora anserina S mat+] Length = 1406 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 1/54 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFN 61 LEK IGY F +SLL +A+TH S + + S +RLEFLGD IL L+ LF+ Sbjct: 1080 LEKLIGYTFKKKSLLIEAMTHPSFNVQDTRASLDRLEFLGDAILDYLVVESLFS 1133 >gi|289614471|emb|CBI58755.1| unnamed protein product [Sordaria macrospora] Length = 1365 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 2/49 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLI 55 LEK +GYAF +SLL +A+TH S YERLEFLGD IL +++ Sbjct: 1001 LEKAMGYAFTKKSLLIEAMTHPSCPGLGDNDSCYERLEFLGDAILDVIV 1049 Score = 38.5 bits (88), Expect = 0.65, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 67/159 (42%), Gaps = 30/159 (18%) Query: 1 MSALRYSTLEKRIG-YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG----LLI 55 MS + + R+G N L+ ALT SI +YERLEFLGD IL L Sbjct: 804 MSLVAADLMYNRLGCLELDNLLLVTTALT--SIGSRAPTNYERLEFLGDTILKFCACLTA 861 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM---- 111 S L NH E LS +SLV+ + + + L +I S +K F+ Sbjct: 862 SALFPNH----HERLLSQWKDSLVNNVRLCRASIDFGLDEYIIHSMASKKWRPKFVENYL 917 Query: 112 ---------------TSIQADVVESLIAALYLDGGIEVA 135 + + ADV+ESLI A Y+ G + A Sbjct: 918 DDSKSPKSAETREMSSKMVADVIESLIGATYMCGDMSKA 956 >gi|242763899|ref|XP_002340666.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500] gi|218723862|gb|EED23279.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500] Length = 1494 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 98/245 (40%), Gaps = 36/245 (14%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E ++GY F LL A TH S ++ Y+RLEFLGD +L ++ L+ F Sbjct: 1209 VEMKLGYCFQYPKLLRSAFTHPSYPSAWSTVPCYQRLEFLGDSLLDMVCVEDLYERFPDR 1268 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---------- 115 L+ ++VS + +A L L + ++ S+ L+ + + Q Sbjct: 1269 DPQWLTEHKMAMVSNKFLGSLAVRLSLHTHLQYFSNPLQAQIARAVQDSQLAYDSHQTVD 1328 Query: 116 ------------ADVVESLIAALYLDGGIEVA------GTFVDKYWKQRALKSGKFRRDA 157 +D+VE+ + A+++D G + + Y++ AL + Sbjct: 1329 FWLHTDDPPKCLSDMVEAYLGAIFVDSGFDFGVIESFYAKHIKPYFEDMALYDTFANKHP 1388 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHD---PRFTVVVEISGLAPAQGMDCSKRAAEQV 214 T L FG +Y + P D P V + + AQG S R A ++ Sbjct: 1389 TTFLHRKLTDDFGCI-QYTLRAAEIPSVDGAPPVVLAAVLVHDVVLAQGTASSGRYA-KI 1446 Query: 215 AAAEV 219 A+EV Sbjct: 1447 KASEV 1451 >gi|189190408|ref|XP_001931543.1| double-strand-specific ribonuclease Pac1 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973149|gb|EDU40648.1| double-strand-specific ribonuclease Pac1 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 362 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 5/136 (3%) Query: 17 FANRS-LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F +RS + + ++ S++ YERLE LGD + L+ S L+N F EL + Sbjct: 132 FTHRSAIFDPSIPGSALGQDLSLDYERLELLGDAYIELIASRALYNRFPHVDVPELCMWR 191 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGI 132 LV T + + ++ + K + + AD+VE+ +AA+ L D G Sbjct: 192 ERLVENSTLGKFSHAYGFPDRLKHRAMWDKTSKQYQKVV-ADIVEAYVAAVVLSDPDNGF 250 Query: 133 EVAGTFVDKYWKQRAL 148 E A ++ + W + L Sbjct: 251 ETAEAWLTELWAPQLL 266 >gi|212529276|ref|XP_002144795.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224] gi|210074193|gb|EEA28280.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224] Length = 1497 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 27/165 (16%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + ++K++GY F LL A TH S ++ Y+RLEFLGD +L ++ L+ F Sbjct: 1212 NQIDKKLGYRFKYPRLLRSAFTHPSYPTAWSIVPCYQRLEFLGDSLLDMVCIENLYERFP 1271 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ-------- 115 L+ ++VS + +A LDL + ++ S+ L+ + + Q Sbjct: 1272 DRDPQWLTEHKMAMVSNKFLGSLAVRLDLHTHLQYFSNPLQGRIAQAVEDAQLAYESHQS 1331 Query: 116 --------------ADVVESLIAALYLDGGIE--VAGTFVDKYWK 144 +D+VE+ + A+++D G + V +F K+ K Sbjct: 1332 VDFWIMIEDPPKCLSDMVEAYLGAIFVDSGFDFGVIESFYAKHIK 1376 Score = 39.3 bits (90), Expect = 0.39, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 59/149 (39%), Gaps = 26/149 (17%) Query: 9 LEKRIGYAFA-----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 LE ++GYA + + E L ++YERLEFLGD L + S LF Sbjct: 1012 LEIQLGYALEAVTKDSDNTEEHRLEQIQFQRGMGKNYERLEFLGDCFLKMATSISLFVGS 1071 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK----------------DV 107 + +E +L V +L+ A+E + +IR R+ D Sbjct: 1072 PNDQEFDLHVNRMTLICNRNLFNTAKERKIYEYIRSKGFSRRNWYPEGMKLLRGKANEDK 1131 Query: 108 CSFMT-----SIQADVVESLIAALYLDGG 131 S T ADV E+LI A L GG Sbjct: 1132 ASTHTHGLGEKTIADVCEALIGASLLSGG 1160 >gi|325185579|emb|CCA20062.1| Dicerlike 1 (DCL1) putative [Albugo laibachii Nc14] Length = 1609 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 50/173 (28%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH-----------SYQESYERLEFLGDRILGLLIST 57 LE+R+ Y F N+ LL +A+TH S+ S+Q +YERLE+LGD ++ L + Sbjct: 1383 LEQRLCYRFRNKLLLLEAITHPSVRRLEIVMDNEKRVSWQGNYERLEYLGDALIEYLTVS 1442 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVA--------------RELDLASFIRVSSDL 103 F D+ G LS + VS + + A + D ++ + Sbjct: 1443 YAFLAHDTWLPGSLSNWKAATVSNDALGKTAIACFGVDEAICLGHVQFDREIMNKIKTIP 1502 Query: 104 RKDVCSF-------------------------MTSIQADVVESLIAALYLDGG 131 RK + + I ADV+E+L+AA++LD G Sbjct: 1503 RKYAVDYNVDTIQPGHSRNSTTKSNCTTNLLALPKILADVMEALVAAVFLDSG 1555 >gi|299748332|ref|XP_001837616.2| double-stranded RNA binding domain-containing protein-containing protein [Coprinopsis cinerea okayama7#130] gi|298407924|gb|EAU84240.2| double-stranded RNA binding domain-containing protein-containing protein [Coprinopsis cinerea okayama7#130] Length = 435 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 14/125 (11%) Query: 17 FANRSLLEKALTHSSI----SHSYQE-------SYERLEFLGDRILGLLISTLLFNHFDS 65 NR++ + TH S +H +++ ER E LGD +LGL+++ L+F+ F Sbjct: 94 ITNRNIELQVFTHRSYHARPTHVFEDHINDLSPDNERYEHLGDTVLGLVVTNLMFDMFPG 153 Query: 66 AKEGELSVRFNSLVSAE-TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + G S + SLV T ++++++ L +R+ + T++QADV E+ + Sbjct: 154 LRVGP-STKIRSLVVGNSTLAEISKKYRLPDRLRLHQ-AQAITLRASTNVQADVFEAFVG 211 Query: 125 ALYLD 129 L+ D Sbjct: 212 GLFKD 216 >gi|221125080|ref|XP_002155102.1| PREDICTED: similar to dicer 1 [Hydra magnipapillata] Length = 798 Score = 48.9 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 2/111 (1%) Query: 9 LEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 E I Y F+N+S L +A TH S +S+S Y++ EFLGD IL LI+ + ++ + Sbjct: 604 FEDLISYKFSNKSHLIQAFTHLSYLSNSVTGCYQQYEFLGDAILDFLITLHIQSNTQNLS 663 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQAD 117 G+L+ +++V+ T +A + +I SS +L SF+ ++ D Sbjct: 664 PGQLTYFRSAVVNNNTFGLLAIKHSFYKYIYSSSNELFSSYNSFIEIVKDD 714 Score = 37.7 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 31/57 (54%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLE LGD L +S +F S EG+L++R + +S E +V + + + + I Sbjct: 423 ERLEILGDSFLKQAVSIFVFFQNPSFHEGKLTIRRKNCISNENLCKVGKSVGIQNII 479 >gi|89114026|gb|ABD61604.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L +I+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYIITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 G L+ ++LV+ + +A F R S DV Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038 >gi|238499729|ref|XP_002381099.1| dicer-1, putative [Aspergillus flavus NRRL3357] gi|220692852|gb|EED49198.1| dicer-1, putative [Aspergillus flavus NRRL3357] Length = 605 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+++GY F LL A TH S ++ + Y+RLEFLGD +L ++ LF + Sbjct: 326 VEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPDK 385 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIAA 125 L+ ++ S + +A +L L + +R S+ L+ + + IQA ES A Sbjct: 386 DPQWLTEHKMAMASNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENESQGAV 445 Query: 126 LY 127 Y Sbjct: 446 DY 447 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 22/118 (18%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ++YERLEFLGD L + S LF E + V L+ + A + +L +I Sbjct: 157 KNYERLEFLGDCFLKMATSISLFVQNPDDDEFDFHVNRMCLICNKNLFNTALKKELYQYI 216 Query: 98 RV-----------------SSDLRKDVC-----SFMTSIQADVVESLIAALYLDGGIE 133 R D RK V + ADV E+LI A L GG+ Sbjct: 217 RSRGFSRHTWYPDGLTLLHGRDHRKKVSAESKHALREKTVADVCEALIGASLLSGGLH 274 >gi|242809985|ref|XP_002485488.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500] gi|218716113|gb|EED15535.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500] Length = 1420 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 17/132 (12%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F N S + A++ SS + Y+R EFLGD +L L+ S L EG LS + Sbjct: 954 FENLSHVLTAISASSAQEEH--DYQRYEFLGDSLLKLITSIHLVVKKPLWHEGLLSAEKD 1011 Query: 77 SLVSAETCSQVARELDLASFIRVSS----DLRKDVCS-----------FMTSIQADVVES 121 ++VS + A +L L FI S R + S T ADVVE+ Sbjct: 1012 TIVSNGRLHRTALDLGLDKFILTKSFTGRKWRPNYISQFETVTEEKRQMSTKTLADVVEA 1071 Query: 122 LIAALYLDGGIE 133 L+ A +LDGG E Sbjct: 1072 LLGAAFLDGGYE 1083 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ +GY F S+L +ALTH ++ +Y+RLEFLGD +L + FNH + Sbjct: 1127 MEEILGYKFNKPSILFEALTHPC-ANDGAPTYQRLEFLGDSLLDHFVVQEFFNHPEKISH 1185 Query: 69 GELSVRFNSLVSA 81 ++ + ++V+A Sbjct: 1186 QDMHLMRTAVVNA 1198 >gi|171690380|ref|XP_001910115.1| hypothetical protein [Podospora anserina S mat+] gi|170945138|emb|CAP71249.1| unnamed protein product [Podospora anserina S mat+] Length = 1568 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 3/110 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 KR+GY F LL A H + S+++ SY+RLEFLGD +L + LF+ F A Sbjct: 1260 FHKRMGYRFQYPRLLRSAFQHPTYPTSWEKLPSYQRLEFLGDALLDMACIDHLFHRFPGA 1319 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQ 115 L+ ++VS + +A + ++ SS ++ ++ S++T I+ Sbjct: 1320 DPQWLTEHKMAMVSNQFLGCLAVYIGFHRSLQHSSPAVQSEIASYVTEIE 1369 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 22/119 (18%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +YERLEFLGD L + + ++ E E V L+ A E+ L +IR Sbjct: 1096 NYERLEFLGDAFLKMATTIAIYTLIPDKDEFEYHVERMVLICNRNLFNNALEVKLEEYIR 1155 Query: 99 VSS-------------------DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 + D+RK SI ADV E++I A YL + AG F Sbjct: 1156 SMAFNRRTWYPEGLTLKRGKRKDIRKKHVLADKSI-ADVCEAIIGAAYLTA--QEAGNF 1211 >gi|330944921|ref|XP_003306459.1| hypothetical protein PTT_19601 [Pyrenophora teres f. teres 0-1] gi|311316023|gb|EFQ85435.1| hypothetical protein PTT_19601 [Pyrenophora teres f. teres 0-1] Length = 1448 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 67/201 (33%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +EK +GY F N++LL +ALTH + + SYER EFLGD +L ++S L+ H Sbjct: 1164 IEKLLGYKFNNKALLLEALTHVTFRGLNTNCSYERHEFLGDAVLDYIVSRKLYAH----- 1218 Query: 68 EGELSVR-------------------FNSLVSAETCSQVARELD-----LASFIRVSSDL 103 + ELS R F + V+ E ++ E + L F+R +S+ Sbjct: 1219 KPELSHRKMHGIRTAMVNASFLAYSMFETTVTEELTNKNTLEPEVHQRALWQFLRCTSN- 1277 Query: 104 RKDVCSFMTSIQ---------------------------------ADVVESLIAALYLD- 129 + V S + + Q +D+VES+I ALY+D Sbjct: 1278 -ELVASRIIATQQHAEARNRIATGLKHDSRFPWQALSLTDPPKYLSDIVESVIGALYIDS 1336 Query: 130 -GGIEVAGTFVDKYWKQRALK 149 G I FV++ LK Sbjct: 1337 HGSIATCEEFVNRLGIMSCLK 1357 >gi|296809942|ref|XP_002845309.1| dicer-like protein 1 [Arthroderma otae CBS 113480] gi|238842697|gb|EEQ32359.1| dicer-like protein 1 [Arthroderma otae CBS 113480] Length = 1521 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 28/165 (16%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + +E+++GY F LL A H S + Y+RLEFLGD +L + LF + Sbjct: 1238 NQIEEKLGYRFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMACVNHLFTKYP 1297 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQA------- 116 L+ ++VS + +A L+L I +S+ L+ + + +QA Sbjct: 1298 DKDPQWLTEHKMAMVSNKFLGSLAVGLNLHVHLIHISNVLQGQITCYTEELQAMKMEMGG 1357 Query: 117 ----------------DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 D+VE+ + A+++D +D ++K+ Sbjct: 1358 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNF--DVIDDFFKR 1400 >gi|317148472|ref|XP_001822794.2| RNase3 domain protein [Aspergillus oryzae RIB40] Length = 354 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 5/126 (3%) Query: 22 LLEKAL-THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +LE+A+ TH +S+ +++Y+RLE LGD + L+ + L++ F G +S LV Sbjct: 124 VLERAVFTHPGVSNDTEKTYDRLEILGDAYIELIATKLIWKRFREIPSGRISQIRELLVK 183 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD---GGIEVAGT 137 ET ++ A L V D + + T +AD+ E+ +AA + G V Sbjct: 184 NETLAEYAAGYGLDRKAAVPQDYLRQSKRW-TKTRADIFEAYVAAAIISHPVDGYRVVEN 242 Query: 138 FVDKYW 143 ++ + W Sbjct: 243 WLTQLW 248 >gi|325115276|emb|CBZ50831.1| putative helicase [Neospora caninum Liverpool] Length = 4082 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL A I E+YERLE+LGD ++G L++ LF+ F + +EG LS N L+S Sbjct: 3873 LLTVARNRDVILPGLAETYERLEYLGDSVIGFLVTDWLFSRFPAFREGPLSEAKNVLLSN 3932 Query: 82 E 82 + Sbjct: 3933 Q 3933 >gi|320585938|gb|EFW98617.1| RNA helicase rnase [Grosmannia clavigera kw1407] Length = 2671 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 17/130 (13%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 ++RSL+ A+ S+ + ++YE LEF+GD +L L+ + A EG LS+ + Sbjct: 1073 SDRSLITTAI--SAPAARLHDNYEVLEFIGDAVLKLMAAANCAAQNLDAPEGHLSLFKDR 1130 Query: 78 LVSAETCSQVARELDLASFIRVSS-DLR--KDV------------CSFMTSIQADVVESL 122 LV+ + A E L FI S LR +DV T ADVVE+L Sbjct: 1131 LVANSRLCRAATEFGLDRFIVGSQWSLREWRDVKIEAEEEKGGEQLVMSTKTLADVVEAL 1190 Query: 123 IAALYLDGGI 132 I A +DGG+ Sbjct: 1191 IGAALVDGGL 1200 Score = 41.6 bits (96), Expect = 0.086, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFN 61 +TLE+ +GY F SLL +A+TH S + ERLEF+GD +L +I L Sbjct: 1241 TTLEELLGYQFRRPSLLAEAMTHPSTPGIREGGCMERLEFIGDAVLDYVIVQRLLG 1296 >gi|312213183|emb|CBX93265.1| similar to dicer-like protein 2 [Leptosphaeria maculans] Length = 1393 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 STLE+ IG+ F+ + LL A+TH+S + + Y+R EFLGD +L +I+ L+ H Sbjct: 1090 STLERLIGHTFSKKFLLLDAITHASYLGPNVHCDYQRTEFLGDAVLDFIITKRLYAHTPP 1149 Query: 66 AKEGELSVRFNSLVSA 81 + + ++V+A Sbjct: 1150 LEHQTMHAIRTAMVNA 1165 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 24/151 (15%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 LR S L + + + LL KALT SS E Y++LEF GD IL + S L Sbjct: 908 LRTSLLSP-VAFQLLDLPLLVKALTSSSTGEV--EDYQQLEFYGDCILKFISSLHLMAAN 964 Query: 64 DSAKEGELSVRFNSLVS--AETCSQVARELD-----------------LASFIRVSSDLR 104 E L+ + ++VS + T + ++ LD L + V+S Sbjct: 965 PKEPESFLTQKKGNIVSNGSLTRASLSAGLDRYVITKRFTGAKWQPRLLVETVTVTSPPN 1024 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 K + + ADVVES+I A ++ GG A Sbjct: 1025 K--VKLSSKLIADVVESIIGASFVVGGFPKA 1053 >gi|212537957|ref|XP_002149134.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224] gi|210068876|gb|EEA22967.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224] Length = 296 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 4/114 (3%) Query: 37 QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 +++Y+RLE LGD + ++ + L+++HF G +S LV ET + A + Sbjct: 67 EQNYDRLEVLGDAYVEVIATRLIWDHFKDMPAGRMSQVREDLVKNETLAGFASQYGFDKR 126 Query: 97 IRVSS-DLRKDVCSFMTSIQADVVESLIAALYL---DGGIEVAGTFVDKYWKQR 146 + VS+ + +K I+ DV E+ +AA+ L D G ++ ++ + W R Sbjct: 127 VSVSAPEEQKAQPKRWLKIRGDVFEAYVAAVVLSNPDHGFDIVEQWLRELWLPR 180 >gi|225430894|ref|XP_002269915.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1380 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 22/145 (15%) Query: 7 STLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S LE + Y+F + SLL +ALTH S + Y+RLEFLGD +L L++ L++ + Sbjct: 1136 SYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYPG 1195 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVC---------------- 108 G L+ ++ V+ + +Q A + L I SS +L + + Sbjct: 1196 MSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVESTFG 1255 Query: 109 ----SFMTSIQADVVESLIAALYLD 129 S + DV+ESL A+ +D Sbjct: 1256 WESESSFPKVLGDVIESLAGAILVD 1280 >gi|297735235|emb|CBI17597.3| unnamed protein product [Vitis vinifera] Length = 1340 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 22/145 (15%) Query: 7 STLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S LE + Y+F + SLL +ALTH S + Y+RLEFLGD +L L++ L++ + Sbjct: 1096 SYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYPG 1155 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVC---------------- 108 G L+ ++ V+ + +Q A + L I SS +L + + Sbjct: 1156 MSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVESTFG 1215 Query: 109 ----SFMTSIQADVVESLIAALYLD 129 S + DV+ESL A+ +D Sbjct: 1216 WESESSFPKVLGDVIESLAGAILVD 1240 >gi|330928085|ref|XP_003302123.1| hypothetical protein PTT_13822 [Pyrenophora teres f. teres 0-1] gi|311322704|gb|EFQ89784.1| hypothetical protein PTT_13822 [Pyrenophora teres f. teres 0-1] Length = 441 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 5/136 (3%) Query: 17 FANRS-LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F +RS + + ++ S++ YERLE LGD + L+ S L+N F EL + Sbjct: 139 FTHRSAIFDPSIPGSTLGQDLSLDYERLELLGDAYIELIASRALYNRFPHVDVPELCMWR 198 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGI 132 LV T + + ++ + K + + AD+VE+ +AA+ L D G Sbjct: 199 ERLVENSTLGRFSHAYGFPDRLKHRAMWDKTSKQYQKVV-ADIVEAYVAAIVLSDPDNGF 257 Query: 133 EVAGTFVDKYWKQRAL 148 E A ++ + W + L Sbjct: 258 EAAEAWLTELWAPQLL 273 >gi|167046030|gb|ABZ10546.1| dicer-like protein D [Placozoa sp. DMJ-2008] Length = 351 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 47/166 (28%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S + + Y F N L A THSS++ E+Y+RLE+LGD L L+ ++ Sbjct: 174 SCILRNTDYQFNNFYWLRIAFTHSSVA---SENYQRLEYLGDATLEYLLIEFVYCRKPYF 230 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ----------- 115 G++S + + +T S +A + IR S L+ D+ M SIQ Sbjct: 231 GPGKISHFKSVMTRNQTFSLIAIAFQFYTHIRCHSKLKLDI---MDSIQNFKEILLDNHQ 287 Query: 116 ------------------------------ADVVESLIAALYLDGG 131 ADV E+ IAA+YLD G Sbjct: 288 DDHQPDIGHFANLAYQLYTSNRYQKLPKVCADVFEAFIAAIYLDCG 333 >gi|258565145|ref|XP_002583317.1| predicted protein [Uncinocarpus reesii 1704] gi|237907018|gb|EEP81419.1| predicted protein [Uncinocarpus reesii 1704] Length = 1194 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 1/52 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +E+ +GY F +SL+ ALTH S S + + SY+RLEF+GD +L +++ LF Sbjct: 902 IEELLGYTFTKKSLVLAALTHPS-STTSRHSYQRLEFIGDSVLDIIVVQALF 952 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 20/135 (14%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F++ SL+ A++ S + +Y+RLEFLGD +L L S L EG L+ R + Sbjct: 727 FSDLSLVLTAISSSVAREA--SNYQRLEFLGDSLLKLYTSIELAAKNLQWPEGLLTSRKS 784 Query: 77 SLVSAETCSQVARELDLASFIRV------------------SSDLRKDVCSFMTSIQADV 118 +VS ++ A E L FI + D T + ADV Sbjct: 785 HVVSNSHLAKAATETGLDRFILTKPFSGAKWRPSYNTDHVHAGDEEGSPRVMSTKVLADV 844 Query: 119 VESLIAALYLDGGIE 133 VE+LI A +DG E Sbjct: 845 VEALIGAANIDGADE 859 >gi|221130589|ref|XP_002165718.1| PREDICTED: similar to dicer 1 [Hydra magnipapillata] Length = 1615 Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 2/111 (1%) Query: 9 LEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 E I Y F N+S L +A TH S +S+S Y++ EFLGD IL LI+ + ++ + Sbjct: 787 FEDHISYRFLNKSHLIQAFTHLSYLSNSVTGCYQQYEFLGDAILDFLITLHIQSNTQNLS 846 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQAD 117 G+L+ +++V+ T +A + +I SS +L SF+ ++ D Sbjct: 847 PGQLTYFRSAVVNNNTFGLLAIKHSFYKYIYSSSNELFSSYNSFIEIVKDD 897 Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALT S + ERLE LGD L +S +F S EG+L++R +S E Sbjct: 592 EALTTRQASMPF--DLERLEVLGDSFLKQAVSIFVFFQNPSFHEGKLTIRRKKCISNENL 649 Query: 85 SQVARELDLASFI 97 +V + + + + I Sbjct: 650 CKVGKSVGIQNII 662 >gi|255944467|ref|XP_002563001.1| Pc20g04580 [Penicillium chrysogenum Wisconsin 54-1255] gi|211587736|emb|CAP85787.1| Pc20g04580 [Penicillium chrysogenum Wisconsin 54-1255] Length = 151 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 8/121 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE IGY F +RSLLE+AL + E ERL LGD++L L++ + ++ ++ Sbjct: 5 LESLIGYQFHDRSLLEEALEEAG---PQTEGNERLALLGDKVLSLMLLHRWYMEGNTTEQ 61 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G ++ + + AR LD F+ D+++ V A V++++ A++L Sbjct: 62 GTNLLQIYA--GNKHLISRARALDFPKFVIQRLDIKRSVPDHTL---ATTVKAILGAVWL 116 Query: 129 D 129 D Sbjct: 117 D 117 >gi|195996181|ref|XP_002107959.1| hypothetical protein TRIADDRAFT_51985 [Trichoplax adhaerens] gi|190588735|gb|EDV28757.1| hypothetical protein TRIADDRAFT_51985 [Trichoplax adhaerens] Length = 685 Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHFD 64 LE +GY+F +R LL ALTH++ +H+ E Y+RLEFLGD IL ++ ++ + Sbjct: 433 LEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAILQYIVVRHCYHANN 492 Query: 65 SAKEGEL 71 + K +L Sbjct: 493 NYKPADL 499 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 KALT + + + + E LEFLGD L +S F + EG+LS + +VS E Sbjct: 248 KALTLARANDDF--NLETLEFLGDSYLKYAVSISFFLSYSKFHEGQLSSLKSKIVSNENL 305 Query: 85 SQVARELDLASFI 97 Q+ ++ L +I Sbjct: 306 YQIGIKMGLPGYI 318 >gi|159126180|gb|EDP51296.1| nucleolar RNAse III, putative [Aspergillus fumigatus A1163] Length = 373 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 4/123 (3%) Query: 27 LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86 TH +S + +Y+RLE LGD + L+ + ++ ++ G++S LV ET S+ Sbjct: 149 FTHPGLSKDSKLTYDRLEILGDAYIELIATRFIWGRYEGFSSGQISQIRELLVKNETLSE 208 Query: 87 VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGIEVAGTFVDKYW 143 A L + V DL + T + D+ ES +AA+ L G VA ++ + W Sbjct: 209 FATLYGLDNRASVPRDLLSQPRRW-TKTKGDIFESYVAAVILSRPSDGYHVAERWLTRLW 267 Query: 144 KQR 146 R Sbjct: 268 LPR 270 >gi|212537955|ref|XP_002149133.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224] gi|210068875|gb|EEA22966.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224] Length = 374 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 4/114 (3%) Query: 37 QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 +++Y+RLE LGD + ++ + L+++HF G +S LV ET + A + Sbjct: 145 EQNYDRLEVLGDAYVEVIATRLIWDHFKDMPAGRMSQVREDLVKNETLAGFASQYGFDKR 204 Query: 97 IRVSS-DLRKDVCSFMTSIQADVVESLIAALYL---DGGIEVAGTFVDKYWKQR 146 + VS+ + +K I+ DV E+ +AA+ L D G ++ ++ + W R Sbjct: 205 VSVSAPEEQKAQPKRWLKIRGDVFEAYVAAVVLSNPDHGFDIVEQWLRELWLPR 258 >gi|162447497|ref|YP_001620629.1| dsRNA-spesific ribonuclease [Acholeplasma laidlawii PG-8A] gi|161985604|gb|ABX81253.1| dsRNA-spesific ribonuclease [Acholeplasma laidlawii PG-8A] Length = 335 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 18/172 (10%) Query: 9 LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E +GY F N++LL +A T SS + E LEF+GD ++ +I + N+ +A Sbjct: 9 IEDILGYTFTNKNLLIQAFTRSSEREKNNNRDSEILEFIGDTVINYVIIQMFNNNLFNAD 68 Query: 68 ---------EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 EGEL+ + +V + + + L F+R SD K + S S ++D+ Sbjct: 69 NYGLNSQYSEGELTELKSLIVENKNLAAKIDDFGLDRFLR--SDNSKQIPS---SFKSDL 123 Query: 119 VESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 +ES++ A+ +D E + VD RA G + + +L++W + Sbjct: 124 LESIVGAIAIDSHYEEKEIYEIVDYLLMPRAY-IGSLKFNYYLKLKQWCKIR 174 >gi|321456672|gb|EFX67773.1| hypothetical protein DAPPUDRAFT_115150 [Daphnia pulex] Length = 228 Score = 48.1 bits (113), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 1/46 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGL 53 +EK IGY F N+ LL +A+THSS ++ ESY E++GDR+LG Sbjct: 29 VEKTIGYIFKNKLLLIQAMTHSSYKNNCLTESYNEQEWIGDRVLGF 74 >gi|217077865|ref|YP_002335583.1| ribonuclease III [Thermosipho africanus TCF52B] gi|217037720|gb|ACJ76242.1| ribonuclease III [Thermosipho africanus TCF52B] Length = 159 Score = 48.1 bits (113), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 12/154 (7%) Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE--- 133 ++ S + ++ R++ L ++I + K + SI ADVVE+L+AA+Y+D + Sbjct: 7 AVASEDILYEIGRDIGLENYIFLGKGELKSGGKYKKSIIADVVEALVAAIYVDCKKDLNV 66 Query: 134 VAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 + F D + + SGK D KT+LQE +F P Y +F Sbjct: 67 LENVFHDTFKRYIEIFFSGKRIFDYKTKLQEITQDRFKQLPVYDTV-----SQKNKFITT 121 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223 + I G ++ SK+ +E++AA E LK E Sbjct: 122 LYIDGKIYSKAEGFSKKESEKLAAKIAYEKLKEE 155 >gi|296422379|ref|XP_002840738.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636961|emb|CAZ84929.1| unnamed protein product [Tuber melanosporum] Length = 524 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 27/139 (19%) Query: 22 LLEKALTHSS--------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 L ++A TH S + Q+ YERLEFLGD L + S +L+N F +EG LS Sbjct: 275 LRQQAFTHKSFIKGEDAGLPGIEQQHYERLEFLGDSYLQSITSRILYNRFSKLREGPLSD 334 Query: 74 RFNSLVSAETCSQVA---------RELD------LASFIRVSSDLRKDVCSFMTSIQADV 118 LV+ S A RE + + S KD+ + AD Sbjct: 335 MRQQLVANRPLSTYATIYRFHDKVRESKGQNTAAPVALVHNSRGTYKDMG--VNKTLADC 392 Query: 119 VESLIAALYLD--GGIEVA 135 E+ IAA+ LD G+++A Sbjct: 393 FEAYIAAIVLDSPNGVDIA 411 >gi|70984786|ref|XP_747899.1| nucleolar RNAse III [Aspergillus fumigatus Af293] gi|66845527|gb|EAL85861.1| nucleolar RNAse III, putative [Aspergillus fumigatus Af293] Length = 373 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 4/123 (3%) Query: 27 LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86 TH +S + +Y+RLE LGD + L+ + ++ ++ G++S LV ET S+ Sbjct: 149 FTHPGLSKDSKLTYDRLEILGDAYIELIATRFIWGRYEGFSSGQISQIRELLVKNETLSE 208 Query: 87 VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGIEVAGTFVDKYW 143 A L + V DL + T + D+ ES +AA+ L G VA ++ + W Sbjct: 209 FATLYGLDNRASVPRDLLSQPRRW-TKTKGDIFESYVAAVILSRPSDGYHVAERWLTQLW 267 Query: 144 KQR 146 R Sbjct: 268 LPR 270 >gi|530452|emb|CAA83781.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 84 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 2/56 (3%) Query: 19 NRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 ++ + ++ALTH+S ++ + SY+RLEFLGD IL + +S LF H+ EGEL+ Sbjct: 16 DQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYVSKFLFFHYSKLGEGELT 71 >gi|146149942|gb|ABQ02405.1| dicer [Schistosoma mansoni] Length = 2641 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 19/135 (14%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS------ISHSYQES-------------YERLEF 45 R+ LE + Y F + SLL +A TH S +S S S Y+RLEF Sbjct: 2194 RFDELESSLNYTFKDPSLLIQAFTHPSYHQLRVLSTSNNLSDQSNLMFSTDLDCYQRLEF 2253 Query: 46 LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 LGD +L +I+ L+ G L+ ++LV+ + +A + L + R SS Sbjct: 2254 LGDAVLDYVITRFLYEDSKQHSPGVLTDLRSALVNNNIFAALAVRIGLHKYFRASSPQLL 2313 Query: 106 DVCSFMTSIQADVVE 120 Q DV + Sbjct: 2314 HTIDVFVRYQKDVAK 2328 >gi|251764794|sp|Q69LX2|DCL2B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2b; AltName: Full=Dicer-like protein 2b; Short=OsDCL2b Length = 1377 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 19/141 (13%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFDSA 66 +LE +GY F + LL +ALTH S S S Y+RLEFLGD IL L + ++ + Sbjct: 1134 SLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDC 1193 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF--------------- 110 L+ ++ V+ + A + L I SS+L + + + Sbjct: 1194 TPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYGWEAG 1253 Query: 111 --MTSIQADVVESLIAALYLD 129 + + DV+ES+ A+YLD Sbjct: 1254 IGLPKVLGDVIESIAGAIYLD 1274 >gi|222625282|gb|EEE59414.1| hypothetical protein OsJ_11564 [Oryza sativa Japonica Group] Length = 1371 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 19/141 (13%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFDSA 66 +LE +GY F + LL +ALTH S S S Y+RLEFLGD IL L + ++ + Sbjct: 1128 SLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDC 1187 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF--------------- 110 L+ ++ V+ + A + L I SS+L + + + Sbjct: 1188 TPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYGWEAG 1247 Query: 111 --MTSIQADVVESLIAALYLD 129 + + DV+ES+ A+YLD Sbjct: 1248 IGLPKVLGDVIESIAGAIYLD 1268 >gi|50726394|dbj|BAD34005.1| CAF protein-like [Oryza sativa Japonica Group] gi|51091635|dbj|BAD36404.1| CAF protein-like [Oryza sativa Japonica Group] Length = 1375 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 19/141 (13%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFDSA 66 +LE +GY F + LL +ALTH S S S Y+RLEFLGD IL L + ++ + Sbjct: 1132 SLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDC 1191 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF--------------- 110 L+ ++ V+ + A + L I SS+L + + + Sbjct: 1192 TPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYGWEAG 1251 Query: 111 --MTSIQADVVESLIAALYLD 129 + + DV+ES+ A+YLD Sbjct: 1252 IGLPKVLGDVIESIAGAIYLD 1272 >gi|322700444|gb|EFY92199.1| Dicer-like protein 2 [Metarhizium acridum CQMa 102] Length = 1441 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLI 55 LE +GY F +SLL +A+TH S Y + SYE LEF+GD IL +I Sbjct: 1157 LEHLVGYQFKKKSLLIEAMTHQSCMFDYNRRSYEHLEFIGDAILDFII 1204 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 68/150 (45%), Gaps = 21/150 (14%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +TL +RI + L+ +A+ SS S + +YERLEFLGD IL + + Sbjct: 976 TTLLERIN--ITDLGLVREAI--SSRSAAEPVNYERLEFLGDSILKYCTAIQVSAIHPEW 1031 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------DLRKDVCS---------- 109 EG LS + LV S+ A ++ LA FI S L D + Sbjct: 1032 PEGYLSFFKDRLVGNSRLSRAAIDVGLAKFILTKSFTGQKWRPLYLDNYTGNPGKVSPRK 1091 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFV 139 T ADVVE+LI A Y++GGI A + Sbjct: 1092 ISTKTLADVVEALIGASYINGGITKAQNCI 1121 >gi|297836192|ref|XP_002885978.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297331818|gb|EFH62237.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 740 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 4/92 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSA 66 +EK + Y F +++LL++A+T +S S++ S +ERLEFLGD +L ++ S + + + Sbjct: 7 VEKILNYTFTDKNLLKEAITKTSGSNTESSSLLFERLEFLGDSVLLVVFSNHIEITYPNL 66 Query: 67 KEGELS-VRFNSLVSAETCSQVARELDLASFI 97 +L+ VR + VS ET ++VA +L FI Sbjct: 67 HPNDLNDVRIAN-VSNETFARVAVNNNLHQFI 97 Score = 41.6 bits (96), Expect = 0.082, Method: Compositional matrix adjust. Identities = 33/139 (23%), Positives = 67/139 (48%), Gaps = 21/139 (15%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +EK + Y+F N++LL +ALTH+S S ++RL F+G + L + ++ + Sbjct: 376 VEKILNYSFTNKNLLREALTHNS---SNLLPFQRLMFVGKAGISLAFANHMYLTYPKLGP 432 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDL-RKDVCSFM---------------- 111 EL++ N+ + ++VA + + F++ + ++ + F+ Sbjct: 433 KELTMLQNANTCNDRYARVAVKRGIYQFLKCNVRTSKRQIIEFIKMLGKEDDPDPFRSVK 492 Query: 112 -TSIQADVVESLIAALYLD 129 I D+VES+ A+Y+D Sbjct: 493 APKILTDLVESVAGAVYID 511 >gi|327355811|gb|EGE84668.1| hypothetical protein BDDG_07613 [Ajellomyces dermatitidis ATCC 18188] Length = 1509 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 28/162 (17%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 R+GY F LL A TH+S ++ Y+RLEFLGD +L ++ L++ + Sbjct: 1228 RLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYPDRDPQ 1287 Query: 70 ELSVRFNSLVSAETCSQVARELDLA-SFIRVSSDLRKDVCSFMTSIQ------------- 115 L+ ++VS + VA +L L I S+ L + ++ I+ Sbjct: 1288 WLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNNSPDAW 1347 Query: 116 ----------ADVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145 D++E+ I A+++D EV F ++ KQ Sbjct: 1348 TTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQ 1389 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 27/130 (20%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ++YERLEFLGD L + S LF E + V+ L+ + A + L FI Sbjct: 1059 KNYERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFI 1118 Query: 98 RVSSDLRKD-------------------VCSFMTSIQADVVESLIAALYLDGG------- 131 R R++ S AD+ E+LI A L GG Sbjct: 1119 RTQGFSRRNWYPEGIKLLQGKAKSESQNKHSLGDKTIADICEALIGASLLSGGKAHRFDS 1178 Query: 132 -IEVAGTFVD 140 ++ TFV+ Sbjct: 1179 AVKAVTTFVN 1188 >gi|261198280|ref|XP_002625542.1| dicer-like protein [Ajellomyces dermatitidis SLH14081] gi|239595505|gb|EEQ78086.1| dicer-like protein [Ajellomyces dermatitidis SLH14081] Length = 1522 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 28/162 (17%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 R+GY F LL A TH+S ++ Y+RLEFLGD +L ++ L++ + Sbjct: 1241 RLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYPDRDPQ 1300 Query: 70 ELSVRFNSLVSAETCSQVARELDLA-SFIRVSSDLRKDVCSFMTSIQ------------- 115 L+ ++VS + VA +L L I S+ L + ++ I+ Sbjct: 1301 WLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNNSPDAW 1360 Query: 116 ----------ADVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145 D++E+ I A+++D EV F ++ KQ Sbjct: 1361 TTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQ 1402 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 27/130 (20%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ++YERLEFLGD L + S LF E + V+ L+ + A + L FI Sbjct: 1072 KNYERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFI 1131 Query: 98 RVSSDLRKD-------------------VCSFMTSIQADVVESLIAALYLDGG------- 131 R R++ S AD+ E+LI A L GG Sbjct: 1132 RTQGFSRRNWYPEGIKLLQGKAKSESQNKHSLGDKTIADICEALIGASLLSGGKAHRFDS 1191 Query: 132 -IEVAGTFVD 140 ++ TFV+ Sbjct: 1192 AVKAVTTFVN 1201 >gi|238497846|ref|XP_002380158.1| RNA helicase/RNAse III, putative [Aspergillus flavus NRRL3357] gi|220693432|gb|EED49777.1| RNA helicase/RNAse III, putative [Aspergillus flavus NRRL3357] Length = 1339 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 15/108 (13%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +Y+R EFLGD IL ++S LF + EG L+ ++V ++ A + L SFI Sbjct: 945 NYQRYEFLGDSILKYIVSCQLFFQNLNWPEGFLTEGRTTIVQNPRLTRAALDAGLDSFII 1004 Query: 99 VSS-DLRKDVCSFMTS--------------IQADVVESLIAALYLDGG 131 + R+ + +++ + ADV+E+LI A YLDGG Sbjct: 1005 TKALTPRRWIAPLISTRVGAAPVKRQMSAKVLADVIEALIGAAYLDGG 1052 >gi|321445499|gb|EFX60714.1| hypothetical protein DAPPUDRAFT_123225 [Daphnia pulex] Length = 145 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 1/46 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGL 53 +EK IGY F N+ LL +A+THSS ++ ESY E++GDR+LG Sbjct: 29 VEKTIGYIFKNKLLLIQAMTHSSYKNNCLTESYNEQEWIGDRVLGF 74 >gi|146324173|ref|XP_753471.2| RNA helicase/RNAse III [Aspergillus fumigatus Af293] gi|129558032|gb|EAL91433.2| RNA helicase/RNAse III, putative [Aspergillus fumigatus Af293] Length = 1546 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 15/140 (10%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+ +GY F LL A+TH S+ ++ Y+RLEFLGD +L ++ LF F Sbjct: 1277 VEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPD 1336 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQ--------- 115 LS ++VS + ++ +L I S+ L+ + ++ I+ Sbjct: 1337 RDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQGA 1396 Query: 116 --ADVVESLIAALYLDGGIE 133 D+VE+ + A+++D + Sbjct: 1397 CLPDMVEAYLGAIFVDSKFD 1416 >gi|239607869|gb|EEQ84856.1| dicer-like protein [Ajellomyces dermatitidis ER-3] Length = 1522 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 28/162 (17%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 R+GY F LL A TH+S ++ Y+RLEFLGD +L ++ L++ + Sbjct: 1241 RLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYPDRDPQ 1300 Query: 70 ELSVRFNSLVSAETCSQVARELDLA-SFIRVSSDLRKDVCSFMTSIQ------------- 115 L+ ++VS + VA +L L I S+ L + ++ I+ Sbjct: 1301 WLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNNSPDAW 1360 Query: 116 ----------ADVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145 D++E+ I A+++D EV F ++ KQ Sbjct: 1361 TTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQ 1402 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 27/130 (20%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ++YERLEFLGD L + S LF E + V+ L+ + A + L FI Sbjct: 1072 KNYERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFI 1131 Query: 98 RVSSDLRKD-------------------VCSFMTSIQADVVESLIAALYLDGG------- 131 R R++ S AD+ E+LI A L GG Sbjct: 1132 RTQGFSRRNWYPEGIKLLQGKAKSESQNKHSLGDKTIADICEALIGASLLSGGKAHRFDS 1191 Query: 132 -IEVAGTFVD 140 ++ TFV+ Sbjct: 1192 AVKAVTTFVN 1201 >gi|256087296|ref|XP_002579808.1| dicer-1 [Schistosoma mansoni] gi|238665295|emb|CAZ36047.1| dicer-1, putative [Schistosoma mansoni] Length = 2174 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 19/116 (16%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS------ISHSYQES-------------YERLEF 45 R+ LE + Y F + SLL +A TH S +S S S Y+RLEF Sbjct: 1890 RFDELESSLNYTFKDPSLLIQAFTHPSYHQLRVLSTSNNLSDQSNLMFSTDLDCYQRLEF 1949 Query: 46 LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101 LGD +L +I+ L+ G L+ ++LV+ + +A + L + R SS Sbjct: 1950 LGDAVLDYVITRFLYEDSKQHSPGVLTDLRSALVNNNIFAALAVRIGLHKYFRASS 2005 >gi|15242329|ref|NP_199328.1| RTL3 (RNase three-like protein 3); RNA binding / double-stranded RNA binding / ribonuclease III [Arabidopsis thaliana] gi|75171238|sp|Q9FKF0|RTL3_ARATH RecName: Full=Ribonuclease 3-like protein 3; AltName: Full=Ribonuclease III-like protein 3; Short=RNase III-like protein 3; AltName: Full=Ribonuclease three-like protein 3 gi|9759600|dbj|BAB11388.1| unnamed protein product [Arabidopsis thaliana] gi|332007827|gb|AED95210.1| RNAse THREE-like protein 3 [Arabidopsis thaliana] Length = 957 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 72/145 (49%), Gaps = 25/145 (17%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +EK + Y+F N++LL++A+T S ++RLEF GD IL + + + + + + K Sbjct: 7 VEKILNYSFVNKTLLKEAITQKS------PLFDRLEFFGDSILEVAFTNYICHTYPNLKV 60 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQ------------ 115 EL + VS E +++A +L F+ + + L K V +F +++ Sbjct: 61 KELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAEAVRKEDDPVPYGGLV 120 Query: 116 ------ADVVESLIAALYLDGGIEV 134 AD +ES+ A +++D +V Sbjct: 121 KAPKILADTLESIAATVFIDVNYDV 145 >gi|159126799|gb|EDP51915.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus A1163] Length = 1546 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 15/140 (10%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+ +GY F LL A+TH S+ ++ Y+RLEFLGD +L ++ LF F Sbjct: 1277 VEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPD 1336 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQ--------- 115 LS ++VS + ++ +L I S+ L+ + ++ I+ Sbjct: 1337 RDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQGA 1396 Query: 116 --ADVVESLIAALYLDGGIE 133 D+VE+ + A+++D + Sbjct: 1397 CLPDMVEAYLGAIFVDSKFD 1416 >gi|297794785|ref|XP_002865277.1| hypothetical protein ARALYDRAFT_917014 [Arabidopsis lyrata subsp. lyrata] gi|297311112|gb|EFH41536.1| hypothetical protein ARALYDRAFT_917014 [Arabidopsis lyrata subsp. lyrata] Length = 786 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 32/157 (20%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 T+EK + Y+F N++LL++A+T S ++RLEFLGD +L + ++ + + + + K Sbjct: 6 TVEKILNYSFKNKTLLKEAITLSP-------RFKRLEFLGDSVLEVALANYIHHAYPNLK 58 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQ---------- 115 EL + V+ E ++ + +L FI SS + + F ++ Sbjct: 59 LQELCDLRTANVNNEKFARATVKHNLYQFIIGEKSSSPSEKIKEFSEAVSKEDVPVPYGG 118 Query: 116 --------ADVVESLIAALYLDGGIEVAGTFVDKYWK 144 D+VES+ A+Y+D +V ++W+ Sbjct: 119 LVEAPKVLGDIVESIAGAVYIDVDFDVQ-----RFWE 150 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 33/153 (21%), Positives = 69/153 (45%), Gaps = 25/153 (16%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + +EK + Y F N++LL++AL +S +++L F+G L L I+ ++ Sbjct: 467 MDSDSVKAVEKILNYVFTNKNLLKEALRQTS------SLFQKLRFVGRAALVLAITNHIY 520 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110 + + + EL + +T ++VA + ++ F K + +F Sbjct: 521 LRYPNFEPRELELLQRGNTCNKTLARVAVKHNIHQFFIGQFKSEKKIEAFSKVVGKEDDP 580 Query: 111 ---------MTSIQADVVESLIAALYLDGGIEV 134 T++ +D+VES+ A+Y+D ++ Sbjct: 581 VPSDGRSERTTNVLSDLVESVAGAVYIDMNFDI 613 >gi|167046020|gb|ABZ10541.1| dicer-like protein B [Trichoplax adhaerens] Length = 357 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHFD 64 LE +GY+F +R LL ALTH++ +H+ E Y+RLEFLGD IL ++ ++ + Sbjct: 187 LEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAILQYIVVRHCYHANN 246 Query: 65 SAKEGEL 71 + K +L Sbjct: 247 NYKPADL 253 >gi|147833654|emb|CAN77284.1| hypothetical protein VITISV_043738 [Vitis vinifera] Length = 1296 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 27/238 (11%) Query: 7 STLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S LE + Y+F + SLL ++LTH S + Y+RLEFLGD +L L++ L++ + Sbjct: 1052 SYLESILNYSFRDPSLLVESLTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYPG 1111 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVC---------------- 108 G L+ ++ V+ + +Q A + L I SS +L + + Sbjct: 1112 MSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGBFDKLPXESTFG 1171 Query: 109 ----SFMTSIQADVVESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRRDAKTELQE 163 S + DV+ESL A+ +D F + + + + EL E Sbjct: 1172 WESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKLHPARELXE 1231 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + V+ ++G T+ VE +G KR A ++A+ EVLK Sbjct: 1232 LCQKEHYXIKRVVVS-QNG---KASVTIEVEANGAKHKHTSTSDKRTAXKLASKEVLK 1285 >gi|145613552|ref|XP_363615.2| hypothetical protein MGG_01541 [Magnaporthe oryzae 70-15] gi|145020615|gb|EDK04744.1| hypothetical protein MGG_01541 [Magnaporthe oryzae 70-15] Length = 1534 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLF 60 S ++ ++GY F N LL A H S Y+ SY+RLEFLGD +L ++ LF Sbjct: 1187 SQIKNKMGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLLDMVCVDYLF 1242 >gi|167046022|gb|ABZ10542.1| dicer-like protein B [Placozoa sp. DMJ-2008] Length = 357 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHFD 64 LE +GY+F +R LL ALTH++ +H+ E Y+RLEFLGD IL ++ ++ + Sbjct: 187 LEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAILQYIVVRHCYHANN 246 Query: 65 SAKEGEL 71 + K +L Sbjct: 247 NYKPADL 253 >gi|158706447|sp|A4RKC3|DCL1_MAGO7 RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease DCL1; Includes: RecName: Full=ATP-dependent helicase DCL1 Length = 1591 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLF 60 S ++ ++GY F N LL A H S Y+ SY+RLEFLGD +L ++ LF Sbjct: 1244 SQIKNKMGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLLDMVCVDYLF 1299 >gi|312212763|emb|CBX92846.1| hypothetical protein [Leptosphaeria maculans] Length = 1067 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 16/144 (11%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQ------ESYERLEFLGDRILGL 53 +A+R +E R GY F N+ L +AL ++ + Y+ + RL LGDR+LGL Sbjct: 123 AAVRVGHIEARTGYNFKNKFLCIEALKNTGKNWPLYYKGVVVEIDRNNRLALLGDRVLGL 182 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV-ARELDLASFIRVSSDLRKDVCSFMT 112 + + F+ S G SV NS + V R + L I + +L S + Sbjct: 183 ALCEIWFHSGHST--GNYSV-MNSFIETRAALNVTGRAMKLHQDILLQHELAVPANSHV- 238 Query: 113 SIQADVVESLIAALYLDGGIEVAG 136 A+ E++I A+Y+D G V Sbjct: 239 ---AEAFEAIIGAIYVDSGHNVPA 259 >gi|242221926|ref|XP_002476701.1| predicted protein [Postia placenta Mad-698-R] gi|220724029|gb|EED78105.1| predicted protein [Postia placenta Mad-698-R] Length = 232 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLF 60 S +E +GY F +++LL +ALTH+S SYERLEFLGD L ++++ L+ Sbjct: 178 SLVETMLGYEFTHKALLVQALTHASYHGDLTTMSYERLEFLGDSALDMVVTDWLY 232 >gi|281414106|ref|ZP_06245848.1| RNAse III [Micrococcus luteus NCTC 2665] Length = 74 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%) Query: 23 LEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LE+ALTH S ++ + ERLEFLGD +LG +++ +F + EG+L+ R ++VS Sbjct: 8 LERALTHRSFAYEQGGLPTNERLEFLGDSVLGYVVTDHIFTVYPDLAEGDLARRRAAVVS 67 Query: 81 AETCSQV 87 ++V Sbjct: 68 TRALAKV 74 >gi|116205049|ref|XP_001228335.1| hypothetical protein CHGG_10408 [Chaetomium globosum CBS 148.51] gi|88176536|gb|EAQ84004.1| hypothetical protein CHGG_10408 [Chaetomium globosum CBS 148.51] Length = 1227 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSA- 66 LE +GY F ++LL +A+TH S + + S +RLEFLGD IL ++ LF D A Sbjct: 1117 LESLVGYTFTKKALLVEAMTHPSCNGPGIRASLDRLEFLGDAILDYVVVNKLFAISDPAP 1176 Query: 67 -KEGELSVRFNSLVSAE 82 + L + +LV+A+ Sbjct: 1177 LENSSLHLLRTALVNAD 1193 Score = 38.5 bits (88), Expect = 0.63, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 21/167 (12%) Query: 9 LEKRI-GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE R+ + SL+ A+T S+ YER+EFLGD IL + + Sbjct: 934 LESRLEQTGITDLSLIVTAITASAARGP--TDYERIEFLGDSILKFCTTINCSATYLKFP 991 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFI------------RVSSDLRKDVCS------ 109 EG LS + +VS + A + L +I DL ++ S Sbjct: 992 EGCLSPLKDKIVSNSRLFRAAVDFGLDRYIIHKAFTLHKWRPTYVEDLIENPPSATETRR 1051 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156 T I ADVVE+LI ++ GGI A + + A S ++ R+ Sbjct: 1052 ISTKIIADVVEALIGTAFVSGGISKALACMSLFLPDVAWNSIEYGRE 1098 >gi|161783812|sp|Q7SCC1|DCL2_NEUCR RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl-2; Includes: RecName: Full=ATP-dependent helicase dcl-2 gi|18376024|emb|CAB91758.2| related to RNA helicase/RNAseIII CAF [Neurospora crassa] Length = 1540 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 4/86 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHF--D 64 LEK + Y F +SLL +A+TH S + + + YERLEFLGD IL +++ L + Sbjct: 1162 LEKAMDYTFNKKSLLIEAMTHPSCAGLGTNESCYERLEFLGDAILDVIVVKRLMAETGPN 1221 Query: 65 SAKEGELSVRFNSLVSAETCSQVARE 90 ++ +S+V+A+ + +A E Sbjct: 1222 ELAHNDMHEHLSSVVTADIMAFLAME 1247 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 66/161 (40%), Gaps = 28/161 (17%) Query: 1 MSALRYSTLEKRIG-YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG----LLI 55 MS + + R+G N L+ AL S +YERLEF+GD IL L Sbjct: 959 MSLVAADLMYNRLGCLQLDNLPLITTALISSG--SRGPTNYERLEFIGDTILKFCACLTA 1016 Query: 56 STLLFNH--FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI---------------- 97 S L +H + E LS + LV+ + +R+ L +I Sbjct: 1017 SALSAHHSIVPNHHERLLSQWKDKLVNNVRLCRASRDFGLDEYIINSAASKKWRPKFVED 1076 Query: 98 ---RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 + S + + + + ADVVESLI A Y+ GG+ A Sbjct: 1077 YMDEMKSPISAETRQMSSKMVADVVESLIGAAYMCGGMSKA 1117 >gi|164424566|ref|XP_963538.2| hypothetical protein NCU06766 [Neurospora crassa OR74A] gi|157070568|gb|EAA34302.2| predicted protein [Neurospora crassa OR74A] Length = 1421 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 4/86 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHF--D 64 LEK + Y F +SLL +A+TH S + + + YERLEFLGD IL +++ L + Sbjct: 1043 LEKAMDYTFNKKSLLIEAMTHPSCAGLGTNESCYERLEFLGDAILDVIVVKRLMAETGPN 1102 Query: 65 SAKEGELSVRFNSLVSAETCSQVARE 90 ++ +S+V+A+ + +A E Sbjct: 1103 ELAHNDMHEHLSSVVTADIMAFLAME 1128 >gi|50290469|ref|XP_447666.1| hypothetical protein [Candida glabrata CBS 138] gi|49526976|emb|CAG60603.1| unnamed protein product [Candida glabrata] Length = 734 Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 20/205 (9%) Query: 37 QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 + SYERLEFLGD ++ +++T+++ F + G+++ LVS + A L Sbjct: 453 KNSYERLEFLGDSVINSIMTTIIYKSFPNYDAGQMTRLRVLLVSNRRLEKWAYLYGLQKH 512 Query: 97 IRVSSDLRKDVC---SFMTSIQADVVESLIAALYLD---GGI----EVAGTFVDKYWKQR 146 + + + ++ S + I AD+ E+ + L D G + + T ++ K Sbjct: 513 LLIRKSILNEMLNSGSKVYKIYADLFEAYVGGLVEDDPTGNMPKIRDWLSTLAEEAIKTI 572 Query: 147 ALKSG------KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV--EISGL 198 + K+ +AKT+L++ A G+ +Y +T R P FTV+ +G Sbjct: 573 SDKNALPGTDNNINMNAKTQLEKLL-APVGLEAQYVITNRRSSKKSP-FTVIECRVANGQ 630 Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223 G + + AEQ+AA +L+++ Sbjct: 631 VTGIGKGRNYKIAEQIAAGNILEKK 655 >gi|295673975|ref|XP_002797533.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] gi|226280183|gb|EEH35749.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] Length = 1450 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY F + L +A TH S S SY+RLEFLGD IL +I LFN + Sbjct: 1136 FRDIESLVGYTFNKKVFLAQAFTHPSNPGSTM-SYQRLEFLGDSILDHIIVDHLFNSPRN 1194 Query: 66 AKEGELSVRFNSLVSAE 82 ++ + SL +A+ Sbjct: 1195 FPHVDMHLMRASLANAD 1211 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 20/111 (18%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +Y+R+EFLGD IL S L EG LS + +VS + S A E L FI Sbjct: 985 NYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNAKDEVVSNKRLSYAAIETGLDKFIF 1044 Query: 99 VS------------------SDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 V D+ + S T ADV+E+L+ A +DGG Sbjct: 1045 VDIFTGVKWRPLYNKAHVKEQDIPRREMS--TKTLADVIEALLGAATIDGG 1093 >gi|115453927|ref|NP_001050564.1| Os03g0583900 [Oryza sativa Japonica Group] gi|122246906|sp|Q10HL3|DCL2A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2a; AltName: Full=Dicer-like protein 2a; Short=OsDCL2a gi|50399921|gb|AAT76309.1| putative RNA helicase/RNAseIII protein, C-terminus truncated [Oryza sativa Japonica Group] gi|108709535|gb|ABF97330.1| Type III restriction enzyme, res subunit family protein, expressed [Oryza sativa Japonica Group] gi|113549035|dbj|BAF12478.1| Os03g0583900 [Oryza sativa Japonica Group] gi|215701504|dbj|BAG92928.1| unnamed protein product [Oryza sativa Japonica Group] Length = 1410 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 22/144 (15%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFDSA 66 +LE +GY F + LL +ALTH S S S Y+RLEFLGD IL L + ++ + Sbjct: 1163 SLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDC 1222 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF--------------- 110 L+ ++ V+ + A + L I SS+L + + + Sbjct: 1223 TPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGW 1282 Query: 111 -----MTSIQADVVESLIAALYLD 129 + + DV+ES+ A+YLD Sbjct: 1283 EAGIGLPKVLGDVIESIAGAIYLD 1306 >gi|41469333|gb|AAS07189.1| putative ribonuclease III, 5'-partial (with alternative splicing) [Oryza sativa Japonica Group] Length = 1017 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 22/144 (15%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFDSA 66 +LE +GY F + LL +ALTH S S S Y+RLEFLGD IL L + ++ + Sbjct: 770 SLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDC 829 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF--------------- 110 L+ ++ V+ + A + L I SS+L + + + Sbjct: 830 TPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGW 889 Query: 111 -----MTSIQADVVESLIAALYLD 129 + + DV+ES+ A+YLD Sbjct: 890 EAGIGLPKVLGDVIESIAGAIYLD 913 >gi|218193216|gb|EEC75643.1| hypothetical protein OsI_12390 [Oryza sativa Indica Group] Length = 1318 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 22/144 (15%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFDSA 66 +LE +GY F + LL +ALTH S S S Y+RLEFLGD IL L + ++ + Sbjct: 1071 SLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDC 1130 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF--------------- 110 L+ ++ V+ + A + L I SS+L + + + Sbjct: 1131 TPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGW 1190 Query: 111 -----MTSIQADVVESLIAALYLD 129 + + DV+ES+ A+YLD Sbjct: 1191 EAGIGLPKVLGDVIESIAGAIYLD 1214 >gi|321460745|gb|EFX71784.1| hypothetical protein DAPPUDRAFT_111332 [Daphnia pulex] Length = 134 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 8/80 (10%) Query: 9 LEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LEK +GY F N+ L+ ALTH++ I ++S +RLE LGD+ LG +I + + + Sbjct: 38 LEKILGYEFQNKDNLKLALTHTTSNPIKCPSKDS-DRLETLGDKFLGAMIMVKYYKTYPT 96 Query: 66 AKEGELSVRFNSLVSAETCS 85 GEL+ +L S TC+ Sbjct: 97 YGAGELA----NLTSMITCN 112 >gi|307353641|ref|YP_003894692.1| ribonuclease III [Methanoplanus petrolearius DSM 11571] gi|307156874|gb|ADN36254.1| ribonuclease III [Methanoplanus petrolearius DSM 11571] Length = 173 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 9/130 (6%) Query: 9 LEKRIGYAFANRSLLEKALTH--SSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFD 64 LE+ IGY F N LL +ALT S+ + E + + L LGD ++ +++ L Sbjct: 34 LEEIIGYRFKNHELLTRALTRLAYSLENDLPEGFHMDALATLGDAVIDVIVLESLMKSGL 93 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS--IQADVVESL 122 +K GELSV + +V+ + A ++L ++ ++ TS + A++ E+L Sbjct: 94 YSK-GELSVAKSDIVNMTRLRKAAESIELFRYVHWGKG--EEASHIWTSGRVMAELCEAL 150 Query: 123 IAALYLDGGI 132 A+YLDGG+ Sbjct: 151 AGAVYLDGGL 160 >gi|168061351|ref|XP_001782653.1| predicted protein [Physcomitrella patens subsp. patens] gi|162665886|gb|EDQ52556.1| predicted protein [Physcomitrella patens subsp. patens] Length = 514 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 20/204 (9%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 + + ++ E+ +L +GD +L L+ ST L + G ++ R + LV S +AR Sbjct: 307 TFADAHAEARLKLALIGDTVLNLVASTHLIRQYPLLSTGSITERRSQLVCN---SNLARA 363 Query: 91 ----LDLASFIRVSSDLRKDVCSFMTSIQ-------ADVVESLIAALYLDGGIEVAGTFV 139 LDL + L + + T++ AD +E+ I LY++ G+E FV Sbjct: 364 WCTLLDLRELVLCDPLLSRSKKASATALLENQMKACADTLEAYIGGLYVEKGLESTLQFV 423 Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK---VTFRSGPDHDPRFTVVVEIS 196 + L K R+ T L + P+YK V ++ P+ R V V+ Sbjct: 424 ETR-LLPLLLLAKPTRNPVTILHDRCAMVLQEKPDYKLIGVDNQNTPNESCRIRVYVK-- 480 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVL 220 G + G+ S+R A Q AA + L Sbjct: 481 GFRLSTGIGKSQRLARQDAAEKAL 504 >gi|224613135|dbj|BAH24240.1| dsRNA-specific ribonuclease RNaseIII [Candidatus Phytoplasma oryzae] Length = 161 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 5/135 (3%) Query: 88 ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI-EVAGTFVDKYWKQR 146 ARE+ L +I + +K + SI AD E+L A+YLD G EV F Sbjct: 4 AREIKLKDYILLGKGEKKRYI-YNYSIIADAFEALFGAIYLDLGYSEVERVFYHIILP-- 60 Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 LK D KT+LQE + YK+ G H+ +F + +G+ Sbjct: 61 CLKKTINIIDFKTKLQELVQTE-KKNICYKIISEKGLAHEKKFLAEAYLENKCLGRGLGK 119 Query: 207 SKRAAEQVAAAEVLK 221 +K+AAEQ AA + LK Sbjct: 120 TKKAAEQRAAEKALK 134 >gi|50897085|dbj|BAD34723.1| Dicer-related RNase III protein Dcr2p [Tetrahymena thermophila] Length = 1838 Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 23/122 (18%) Query: 35 SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94 +Y +RLEFLGD +L L+I LFN F ++ GEL+ SLV +T + Sbjct: 1617 NYNLCNQRLEFLGDAVLDLIIVEYLFNKFPNSDPGELTQMKTSLVQNKTLCLINLMKGFY 1676 Query: 95 SFIRVSSD--------LRKDVCSFM--TSIQ-------------ADVVESLIAALYLDGG 131 FI S L +V FM TS+ DV+ESL+ A+++D Sbjct: 1677 KFIIGSIQHNKEEIELLLNNVEMFMGDTSLMYDTTYNQSLIKTLGDVIESLVGAIFIDNN 1736 Query: 132 IE 133 ++ Sbjct: 1737 LD 1738 >gi|121713724|ref|XP_001274473.1| RNase3 domain protein [Aspergillus clavatus NRRL 1] gi|119402626|gb|EAW13047.1| RNase3 domain protein [Aspergillus clavatus NRRL 1] Length = 1552 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 33/197 (16%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+++GY F LL A+TH S ++ Y+RLEFLGD +L ++ LF+ F Sbjct: 1271 VEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRVPCYQRLEFLGDSLLDMVCVEDLFHRFPD 1330 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQ--------- 115 L+ ++VS + +A +L I+ S+ L+ + ++ I+ Sbjct: 1331 RDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYVEEIETAEAESEGA 1390 Query: 116 --------------ADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFRR 155 D+VE+ + A+++D EV F + Y++ ++ + Sbjct: 1391 VDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSIYDTFANK 1450 Query: 156 DAKTELQEWAHAKFGVT 172 T L +FG T Sbjct: 1451 HPTTFLHNRLANEFGCT 1467 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 22/118 (18%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ++YERLEFLGD L + S LF E + V L+ + A++ + +I Sbjct: 1102 KNYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNTAKKRQIYRYI 1161 Query: 98 RVSSDLR-------------KDVCSFMTS---------IQADVVESLIAALYLDGGIE 133 R S R KD M S ADV E+LI A L GG E Sbjct: 1162 RSRSFSRHVWYPDGLTLLQGKDHSKKMLSQAKHALGEKTIADVCEALIGACLLSGGPE 1219 >gi|296417821|ref|XP_002838549.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634492|emb|CAZ82740.1| unnamed protein product [Tuber melanosporum] Length = 1490 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLF 60 LE IGY F +++LL +A+TH S S SY+R+EFLGD +L +++ LF Sbjct: 1108 LESLIGYHFTHKALLLEAITHPSWESDMTSLSYQRMEFLGDALLDMVVVNHLF 1160 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 20/143 (13%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ + + S+ + S+ S Y+R EFLGD +L L S L + E Sbjct: 921 LERTLLHPVGFNSIPKMVTALSASSARESTDYQRFEFLGDSVLKFLTSVNLLDEHPFWHE 980 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI--------------------RVSSDLRKDVC 108 G L+ + +V+ ++ A + LA +I RK Sbjct: 981 GYLTRKKEQMVANSRLARAAIDNRLAKWIITDIFTGSKWRPRYVISEEEEFPEKKRKGPK 1040 Query: 109 SFMTSIQADVVESLIAALYLDGG 131 T I ADVVE+LI A YL+G Sbjct: 1041 QLSTKILADVVEALIGAAYLEGN 1063 >gi|146180696|ref|XP_001470932.1| conserved hypothetical protein [Tetrahymena thermophila] gi|146144409|gb|EDK31487.1| conserved hypothetical protein [Tetrahymena thermophila SB210] Length = 1822 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 23/122 (18%) Query: 35 SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94 +Y +RLEFLGD +L L+I LFN F ++ GEL+ SLV +T + Sbjct: 1601 NYNLCNQRLEFLGDAVLDLIIVEYLFNKFPNSDPGELTQMKTSLVQNKTLCLINLMKGFY 1660 Query: 95 SFIRVSSD--------LRKDVCSFM--TSIQ-------------ADVVESLIAALYLDGG 131 FI S L +V FM TS+ DV+ESL+ A+++D Sbjct: 1661 KFIIGSIQHNKEEIELLLNNVEMFMGDTSLMYDTTYNQSLIKTLGDVIESLVGAIFIDNN 1720 Query: 132 IE 133 ++ Sbjct: 1721 LD 1722 >gi|158706452|sp|A2RAF3|DCL1_ASPNC RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent helicase dcl1 Length = 1525 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 28/164 (17%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+++ Y F +LL A TH S ++ + Y+RLEFLGD ++ ++ LF F Sbjct: 1246 IEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDR 1305 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---------- 115 L+ ++VS + +A +L L + ++ S+ L+ + + IQ Sbjct: 1306 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGAV 1365 Query: 116 -------------ADVVESLIAALYLDG--GIEVAGTFVDKYWK 144 D+VE+ + A+++D EV F Y K Sbjct: 1366 DYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIK 1409 >gi|322798617|gb|EFZ20221.1| hypothetical protein SINV_06556 [Solenopsis invicta] Length = 386 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 34/141 (24%) Query: 25 KALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +A TH S + + E Y+RLEFLGD IL LI+ ++ + GEL+ ++LV+ T Sbjct: 150 QAFTHPSYTANGLTECYQRLEFLGDAILDFLITCYIYEKCGNLSPGELTDLRSALVNNIT 209 Query: 84 --CSQVARELDLA-------------SFIRVSSD-------------LRKDVCSF----- 110 C V L +A F++ D + ++ C+ Sbjct: 210 FACLAVRYGLHIALLAYAPKLDEIIDRFVKFQEDRDYVVNDELLYVLIEEEECNLVEYVD 269 Query: 111 MTSIQADVVESLIAALYLDGG 131 + + D+ ESLI A+YLD G Sbjct: 270 VPKVLGDLFESLIGAIYLDSG 290 >gi|158706457|sp|A1CBC9|DCL1_ASPCL RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent helicase dcl1 Length = 1534 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 33/197 (16%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+++GY F LL A+TH S ++ Y+RLEFLGD +L ++ LF+ F Sbjct: 1253 VEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRVPCYQRLEFLGDSLLDMVCVEDLFHRFPD 1312 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQ--------- 115 L+ ++VS + +A +L I+ S+ L+ + ++ I+ Sbjct: 1313 RDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYVEEIETAEAESEGA 1372 Query: 116 --------------ADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFRR 155 D+VE+ + A+++D EV F + Y++ ++ + Sbjct: 1373 VDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSIYDTFANK 1432 Query: 156 DAKTELQEWAHAKFGVT 172 T L +FG T Sbjct: 1433 HPTTFLHNRLANEFGCT 1449 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 22/118 (18%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ++YERLEFLGD L + S LF E + V L+ + A++ + +I Sbjct: 1084 KNYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNTAKKRQIYRYI 1143 Query: 98 RVSSDLR-------------KDVCSFMTS---------IQADVVESLIAALYLDGGIE 133 R S R KD M S ADV E+LI A L GG E Sbjct: 1144 RSRSFSRHVWYPDGLTLLQGKDHSKKMLSQAKHALGEKTIADVCEALIGACLLSGGPE 1201 >gi|317037196|ref|XP_001398755.2| dicer-like protein 1 [Aspergillus niger CBS 513.88] Length = 1493 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 28/164 (17%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+++ Y F +LL A TH S ++ + Y+RLEFLGD ++ ++ LF F Sbjct: 1214 IEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDR 1273 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---------- 115 L+ ++VS + +A +L L + ++ S+ L+ + + IQ Sbjct: 1274 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGAV 1333 Query: 116 -------------ADVVESLIAALYLDG--GIEVAGTFVDKYWK 144 D+VE+ + A+++D EV F Y K Sbjct: 1334 DYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIK 1377 >gi|309800534|ref|ZP_07694685.1| ribonuclease III [Streptococcus infantis SK1302] gi|308115845|gb|EFO53370.1| ribonuclease III [Streptococcus infantis SK1302] Length = 83 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 S L+ F ++SLLE A TH+S ++ ++ ERLEFLGD +L LLIS LF Sbjct: 6 SVLQDSFELVFTDKSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLFKK 65 Query: 63 F 63 + Sbjct: 66 Y 66 >gi|225684610|gb|EEH22894.1| dicer [Paracoccidioides brasiliensis Pb03] Length = 1415 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY F + L +A TH S S SY+RLEFLGD IL +I +FN + Sbjct: 1128 FRDIESLVGYIFNKKVFLAQAFTHPSNPGSTM-SYQRLEFLGDSILDHIIVDHIFNSPRN 1186 Query: 66 AKEGELSVRFNSLVSAE 82 + ++ + SL +A+ Sbjct: 1187 FQHVDMHLMRASLANAD 1203 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 20/111 (18%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +Y+R+EFLGD IL S L EG LS + +VS + S A E L FI Sbjct: 977 NYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNAKDEVVSNKRLSYAAIETGLDKFIF 1036 Query: 99 VS------------------SDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + D+ + S T ADV+E+L+ A +DGG Sbjct: 1037 MDIFTGVKWRPRYNKAHVEEQDIPRREMS--TKTLADVIEALLGAATIDGG 1085 >gi|258614465|ref|ZP_05712235.1| ribonuclease III [Enterococcus faecium DO] Length = 97 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L++ F + +LLE+A THSS + ++ ERLEFLGD +L L++S LF + Sbjct: 9 LKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYP 68 Query: 65 SAKEGELS 72 EG+L+ Sbjct: 69 HLPEGKLT 76 >gi|226286856|gb|EEH42369.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18] Length = 1450 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY F + L +A TH S S SY+RLEFLGD IL +I +FN + Sbjct: 1128 FRDIESLVGYIFNKKVFLAQAFTHPSNPGSTM-SYQRLEFLGDSILDHIIVDHIFNSPRN 1186 Query: 66 AKEGELSVRFNSLVSAE 82 + ++ + SL +A+ Sbjct: 1187 FQHVDMHLMRASLANAD 1203 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 20/111 (18%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +Y+R+EFLGD IL S L EG LS + +VS + S A E L FI Sbjct: 977 NYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNAKDEVVSNKRLSYAAIETGLDKFIF 1036 Query: 99 VS------------------SDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + D+ + S T ADV+E+L+ A +DGG Sbjct: 1037 MDIFTGVKWRPRYNKAHVEEQDIPRREMS--TKTLADVIEALLGAATIDGG 1085 >gi|322702026|gb|EFY93774.1| Dicer-like protein 1 [Metarhizium acridum CQMa 102] Length = 1524 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 2/123 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E IGY F + LL A H S + + +Y+RLEFLGD +L + I LF + A Sbjct: 1248 VEGSIGYKFRSPKLLRSAFKHPSYPYEPELPNYQRLEFLGDALLDVAIVDFLFRRYPLAD 1307 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQADVVESLIAAL 126 L+ ++ S S + EL L I S + + F+ I+ +++ L Sbjct: 1308 PQWLTEHKMAMASNHFFSFLCVELGLHRHILSTGSSMMGHIAGFVEQIEKAKLQTEDGVL 1367 Query: 127 YLD 129 LD Sbjct: 1368 QLD 1370 >gi|326475978|gb|EGD99987.1| hypothetical protein TESG_07315 [Trichophyton tonsurans CBS 112818] Length = 1435 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 14/105 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S +E I Y+F ++LL +L+H S S + +Y+RLEFLGD IL +++ LF Sbjct: 1154 SKIEPLIDYSFTKKALLATSLSHPSNLIS-RMTYQRLEFLGDSILDNIVTRALFRCKKEI 1212 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFI--RVSSDL-RKDVC 108 ++ + +LV+A D +F+ S+D+ R+DVC Sbjct: 1213 PHQDMHLIRTALVNA----------DFLAFLCMNTSTDVTREDVC 1247 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 55/136 (40%), Gaps = 22/136 (16%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F N L+ A+T +S +Y+RLEFLGD L L S L EG LS + Sbjct: 977 GFQNIQLVLTAITATSARED--TNYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKK 1034 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDL--------------------RKDVCSFMTSIQ 115 +S+VS + A + L FI + K T Sbjct: 1035 DSIVSNSRLWKAAVDTGLDQFILTTCFTGAKWRPLYNSTYADNAGKIGEKSTRELSTKTL 1094 Query: 116 ADVVESLIAALYLDGG 131 ADVVESLI A +DGG Sbjct: 1095 ADVVESLIGAAIIDGG 1110 >gi|224613121|dbj|BAH24228.1| dsRNA-specific ribonuclease RNaseIII [Paulownia witches'-broom phytoplasma] Length = 157 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 5/136 (3%) Query: 88 ARELDLASFIRVS-SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146 A+ ++L +++ + + KD + SI AD E+L A+YLD G A Sbjct: 7 AQNIELQNYLLLGKGEKNKDFNA--KSIMADTFEALFGAIYLDLGYLTAKKVFHNIVLPH 64 Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K+ + D KT+LQE ++ +YK+ GP H +F V + G Sbjct: 65 LAKT-IYIIDFKTQLQEIVQSEKKAI-QYKIVQEQGPAHSKKFVAEVYLEKNLLGTGEGS 122 Query: 207 SKRAAEQVAAAEVLKR 222 +K+AAEQ AA + L + Sbjct: 123 TKKAAEQKAAHQALSK 138 >gi|145517933|ref|XP_001444844.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|74830355|emb|CAI39054.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia] gi|124412277|emb|CAK77447.1| unnamed protein product [Paramecium tetraurelia] Length = 632 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 15/122 (12%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N + E+A+ SS + ++ +YE LE LGD +L +I+ +F + EGE++ + L Sbjct: 340 NYQVPEEAIVTSSFN--FKRNYENLEVLGDSVLKYVITADIFKQYKLLDEGEMTSLRSRL 397 Query: 79 VSAETCSQVARELDLASFI--------RVSSDLRKDVCS-----FMTSIQADVVESLIAA 125 + +Q+ +L L FI ++ + L D+ S S +AD+ E++I Sbjct: 398 IMNTFLAQLFEQLGLEQFIINQDLHFKQIKNPLVNDIISSENKQLQISQKADIYEAIIGG 457 Query: 126 LY 127 ++ Sbjct: 458 VF 459 >gi|315051166|ref|XP_003174957.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893] gi|311340272|gb|EFQ99474.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893] Length = 1425 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 14/109 (12%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S +E I Y+F R+LL +L+H S S +Y+RLEFLGD IL +++ LF Sbjct: 1143 SKIEPLIDYSFTKRALLAASLSHPSNLISGM-TYQRLEFLGDSILDNVVTRALFRCDKEI 1201 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRK-DVCSFMT 112 ++ + +LV+A D +F+ + S+D R+ DVC+ T Sbjct: 1202 PHQDMHLIRTALVNA----------DFLAFLCMKTSTDERREDVCASPT 1240 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 63/145 (43%), Gaps = 24/145 (16%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +T+ IG F + L+ A+T +S + +Y+RLEFLGD L L S L Sbjct: 959 NTILSSIG--FKDIKLVLTAITATSAREN--TNYQRLEFLGDSALKLHASMQLLADHPIW 1014 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFI--------------------RVSSDLRKD 106 EG LS + +S+VS + A + L FI V + R+ Sbjct: 1015 HEGILSKKKDSIVSNSRLWKAAVDTGLDRFILTTCFTGAKWRPLYNSTYRHNVGTARREQ 1074 Query: 107 VCSFMTSIQADVVESLIAALYLDGG 131 T ADVVESLI A +DGG Sbjct: 1075 TRELSTKTLADVVESLIGAAIVDGG 1099 >gi|326485005|gb|EGE09015.1| dicer-like protein 2 [Trichophyton equinum CBS 127.97] Length = 1417 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 14/105 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S +E I Y+F ++LL +L+H S S + +Y+RLEFLGD IL +++ LF Sbjct: 1136 SKIEPLIDYSFTKKALLATSLSHPSNLIS-RMTYQRLEFLGDSILDNIVTRALFRCKKEI 1194 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFI--RVSSDL-RKDVC 108 ++ + +LV+A D +F+ S+D+ R+DVC Sbjct: 1195 PHQDMHLIRTALVNA----------DFLAFLCMNTSTDVTREDVC 1229 Score = 42.7 bits (99), Expect = 0.034, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 49/123 (39%), Gaps = 20/123 (16%) Query: 29 HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88 SS S +Y+RLEFLGD L L S L EG LS + +S+VS + A Sbjct: 970 QSSTSAREDTNYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKDSIVSNSRLWKAA 1029 Query: 89 RELDLASFIRVSSDL--------------------RKDVCSFMTSIQADVVESLIAALYL 128 + L FI + K T ADVVESLI A + Sbjct: 1030 VDTGLDQFILTTCFTGAKWRPLYNSTYADNAGKIGEKSTRELSTKTLADVVESLIGAAII 1089 Query: 129 DGG 131 DGG Sbjct: 1090 DGG 1092 >gi|302502160|ref|XP_003013071.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371] gi|291176633|gb|EFE32431.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371] Length = 1490 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 14/105 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S +E I Y+F ++LL +L+H S S +Y+RLEFLGD IL +++ LF Sbjct: 1209 SKIEPLIDYSFTKKALLAASLSHPSNPISGM-TYQRLEFLGDSILDNIVTRALFRCKKEI 1267 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS---DLRKDVC 108 ++ + +LV+A D +F+ +++ + R+DVC Sbjct: 1268 PHQDMHLIRTALVNA----------DFLAFLCMNTSTDETREDVC 1302 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 54/136 (39%), Gaps = 22/136 (16%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F N L+ A+T +S +Y+RLEFLGD L L S L EG LS + Sbjct: 1032 GFQNIQLVLTAITATSARED--TNYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKK 1089 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDL--------------------RKDVCSFMTSIQ 115 +S+VS + A + L FI + K T Sbjct: 1090 DSIVSNSRLWKAAVDTGLDQFILTTCFTGAKWRPLYNSTYTDNAGKIGEKSTRKLSTKTL 1149 Query: 116 ADVVESLIAALYLDGG 131 ADVVESLI +DGG Sbjct: 1150 ADVVESLIGVAIIDGG 1165 >gi|302694007|ref|XP_003036682.1| hypothetical protein SCHCODRAFT_102832 [Schizophyllum commune H4-8] gi|300110379|gb|EFJ01780.1| hypothetical protein SCHCODRAFT_102832 [Schizophyllum commune H4-8] Length = 1489 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 30/165 (18%) Query: 1 MSALRYSTL---EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIST 57 +S LR T+ + IG LL ALTH++ S S +YER+EFLGD +L + Sbjct: 1205 VSFLRPGTIDGVQSVIGQKLNKPELLALALTHANNS-SPLGNYERIEFLGDALLDFQVVE 1263 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ- 115 ++ + L++ +++V + + E L + + S +++ + +++T++Q Sbjct: 1264 YVYRKYTQQPPSVLTLLKSAMVGNSPLAAICAESGLYRHLHQKSHQIQQSINTYLTALQK 1323 Query: 116 ------------------------ADVVESLIAALYLDGGIEVAG 136 +D+VES++ A+Y+ +E G Sbjct: 1324 AKQKEYAAADDDLRERGQYWFDALSDIVESIVGAIYISDDLEWTG 1368 Score = 39.3 bits (90), Expect = 0.39, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 7/79 (8%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF---NHFDSAKEGELSVRFNSL 78 LL ALT + S + +YERLE GD L L S LF +H DS EG+L L Sbjct: 996 LLHAALT--TPSAGFDRNYERLELYGDAFLKYLASLHLFVMSHHNDS--EGKLHAARRPL 1051 Query: 79 VSAETCSQVARELDLASFI 97 +S + + + L L SF+ Sbjct: 1052 ISNQKLMECSLALGLPSFV 1070 >gi|300868242|ref|ZP_07112873.1| hypothetical protein OSCI_3600020 [Oscillatoria sp. PCC 6506] gi|300333766|emb|CBN58057.1| hypothetical protein OSCI_3600020 [Oscillatoria sp. PCC 6506] Length = 328 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 9/113 (7%) Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--------RDAKTELQEWAHAKFG 170 +E L A++LD GI+ F++ +++ + F D+K QEW A Sbjct: 209 LEFLGDAVFLDSGIDSVREFIEPLFEKAIKEPAAFNFNLESKNFVDSKNRFQEWVQANSD 268 Query: 171 VTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 TP VT +G H P + V + +G SK+ AE+ AA + L R Sbjct: 269 NTPPKYVTIHAGGAPHKPEYLAKVYVGEKLYGEGKGSSKKEAEKNAAEDALAR 321 >gi|154150151|ref|YP_001403769.1| ribonuclease III [Candidatus Methanoregula boonei 6A8] gi|153998703|gb|ABS55126.1| ribonuclease III [Methanoregula boonei 6A8] Length = 196 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 15/131 (11%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLL 59 LE+ IGY F + L +ALTHS+ ++ Q++Y LGD +L S +L Sbjct: 13 LERIIGYHFFEQQHLIRALTHSAYANEVIQKNRICLTQDAY---STLGDAVLK--TSLIL 67 Query: 60 FNHFDSAKE-GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 F +E G ++ L + +Q+ R L + F+R+ + S +I AD Sbjct: 68 FLMEKGLQEKGAITRAKEQLEDNASLAQIGRRLKIRRFVRLGRGEKDLWKSGEDTILADT 127 Query: 119 VESLIAALYLD 129 VE++I A+YLD Sbjct: 128 VEAIIGAVYLD 138 >gi|328773741|gb|EGF83778.1| hypothetical protein BATDEDRAFT_85615 [Batrachochytrium dendrobatidis JAM81] Length = 1746 Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 27/154 (17%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +++++ Y F N LL AL + + + +ERLEFLGD I+ +L++ + H+ A Sbjct: 1484 VQQKLSYNFHNPELLLIALM--TPFYFVKSKFERLEFLGDAIMDILVARYFYRHYKHADP 1541 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDL----RKDVCSFMTSIQ--------- 115 LS + V ++ L L + SS L ++ + + IQ Sbjct: 1542 CSLSKMIQATVCKPAFCKILVSLKLHEHLLQSSQLSQHSKEAIVLYANYIQNSHSQHAFK 1601 Query: 116 ------------ADVVESLIAALYLDGGIEVAGT 137 DV E ++AA+++D G + T Sbjct: 1602 QADKAIDGPKVLCDVFEVIVAAIFIDTGYNLERT 1635 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 24/121 (19%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +YERLE LGD++L ++ L + + S + G+LS + LVS + ++A++ L + Sbjct: 1314 NYERLETLGDKVLKFGVAHYLHSSYQSYEVGQLSTILSGLVSNKNLFEIAQQHSLTGMLN 1373 Query: 99 V----SSDLRKDVCSFMTSI--------------------QADVVESLIAALYLDGGIEV 134 S+ F T I Q+D +E+L+ A +L+ G+E Sbjct: 1374 TAPFQSNSWTPPSFCFETRIFVAPTASVDCLDNRVFCGKKQSDFIEALLGAYFLECGVEA 1433 Query: 135 A 135 A Sbjct: 1434 A 1434 >gi|296812107|ref|XP_002846391.1| dicer-like protein 2 [Arthroderma otae CBS 113480] gi|238841647|gb|EEQ31309.1| dicer-like protein 2 [Arthroderma otae CBS 113480] Length = 1437 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S +E I Y+F ++LL +L+H S S +Y+RLEFLGD IL +++ LF Sbjct: 1156 SKIEPLIDYSFTKKALLATSLSHPSNPISGM-TYQRLEFLGDSILDSIVTRALFRSNKEI 1214 Query: 67 KEGELSVRFNSLVSAE 82 ++ + +LV+A+ Sbjct: 1215 PHQDMHLMRTALVNAD 1230 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 28/139 (20%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F + L+ A++ SS S +Y+RLEFLGD L L S L EG LS + Sbjct: 979 GFKDIQLVLTAISASSARES--TNYQRLEFLGDSALKLHTSMQLLVDHPFWHEGLLSHKK 1036 Query: 76 NSLVSAETCSQVARELDLASFI-----------------------RVSSDLRKDVCSFMT 112 ++S + E L FI RV + +++ T Sbjct: 1037 GFIISNSRLWKATIETGLDRFILTACFTGAKWRPLYNSTYTANAGRVGKNSTREIS---T 1093 Query: 113 SIQADVVESLIAALYLDGG 131 ADVVE+LI A +DGG Sbjct: 1094 KTLADVVEALIGAAIVDGG 1112 >gi|313906469|ref|ZP_07839804.1| ribonuclease III [Eubacterium cellulosolvens 6] gi|313468696|gb|EFR64063.1| ribonuclease III [Eubacterium cellulosolvens 6] Length = 365 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 40/221 (18%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDS 65 + ++ +IGY F N LL +A S + E+ E LEF+GD +L + L + + Sbjct: 9 TVVQNQIGYEFQNPLLLRQAFVRKSYTEENGGENNEVLEFIGDTVLSTAVMRYLTEKYGN 68 Query: 66 AK----------------------EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 A EGELS L +T ++ EL F+ + Sbjct: 69 APSFKRPIWPNTPQKPMDFHCEKTEGELSRLKQKLTEKKTLARKIDELGFDKFLIMG--- 125 Query: 104 RKDVCSFMT---SIQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAK 158 + D+ MT S++ D+ E+++ A+ LD + + V+ ++ + D Sbjct: 126 KGDIGQNMTKQASVKEDLFEAILGAVALDSSFDYKKIQSVVEIMLHPDSIVNDGEEADYV 185 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGP------DHDPRFTVVV 193 + EW +A FG P ++ +R P ++P V+V Sbjct: 186 QLIYEWDNA-FGAIPYFR--YRQEPYGISLSPYNPEVIVIV 223 >gi|50312305|ref|XP_456185.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49645321|emb|CAG98893.1| KLLA0F24816p [Kluyveromyces lactis] Length = 478 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 5/118 (4%) Query: 16 AFANRSLLEKAL--THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F ++S++ L T I S+ E RLEFLGD IL ++T+++N F EG+LS Sbjct: 207 VFIHKSMINDKLYLTDQEIIRSHNE---RLEFLGDSILNTTMTTIIYNKFPHFDEGQLSQ 263 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 L++ E + + ++ + D + ADV E+ I L D G Sbjct: 264 LRMRLINNELLKEWSFLYKFPDELKTHNVKPDDNKDGKQKLYADVFEAYIGGLVEDNG 321 >gi|302661784|ref|XP_003022555.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517] gi|291186507|gb|EFE41937.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517] Length = 1468 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 14/105 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S +E I Y+F ++LL +L+H S S +Y+RLEFLGD IL +++ LF Sbjct: 1187 SKIEPLIDYSFTKKALLAASLSHPSNPISGM-TYQRLEFLGDSILDNIVTRALFRCKREI 1245 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS---DLRKDVC 108 ++ + +LV+A D +F+ +++ + R+DVC Sbjct: 1246 PHQDMHLIRTALVNA----------DFLAFLCMNTSTDETREDVC 1280 Score = 42.4 bits (98), Expect = 0.048, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 54/136 (39%), Gaps = 22/136 (16%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F N L+ A+T +S +Y+RLEFLGD L L S L EG LS + Sbjct: 1010 GFQNIQLVLTAITATSARE--DTNYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKK 1067 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDL--------------------RKDVCSFMTSIQ 115 +S+VS + A + L FI + K T Sbjct: 1068 DSIVSNSRLWKAAVDTGLDQFILTTCFTGAKWRPLYNSTYTNNAGKIGEKSTRKLSTKTL 1127 Query: 116 ADVVESLIAALYLDGG 131 ADVVESLI +DGG Sbjct: 1128 ADVVESLIGVAIIDGG 1143 >gi|167046018|gb|ABZ10540.1| dicer-like protein A [Placozoa sp. DMJ-2008] Length = 351 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 29/52 (55%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 E+ +GY F N L A THSS +YE+LEF+GD IL L+ LF Sbjct: 185 FEENLGYKFINIDYLILAFTHSSSEFGDSFNYEKLEFVGDSILNYLVIKYLF 236 >gi|167046016|gb|ABZ10539.1| dicer-like protein A [Trichoplax adhaerens] Length = 351 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 29/52 (55%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 E+ +GY F N L A THSS +YE+LEF+GD IL L+ LF Sbjct: 185 FEENLGYKFINIDYLILAFTHSSSEFGDSFNYEKLEFVGDSILNYLVIKYLF 236 >gi|242807890|ref|XP_002485049.1| nucleolar RNAse III, putative [Talaromyces stipitatus ATCC 10500] gi|218715674|gb|EED15096.1| nucleolar RNAse III, putative [Talaromyces stipitatus ATCC 10500] Length = 371 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 11/140 (7%) Query: 19 NRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 N SL TH + +++Y+RLE LGD + ++ + L++ F G +S Sbjct: 120 NASLERAVFTHPGAPVNVAAEGMEQNYDRLEVLGDAYVEVIATRLIWEQFKDMPAGRMSQ 179 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSS--DLRKDVCSFMTSIQADVVESLIAALYLDG- 130 LV ET + A + + VS+ D R ++ I+ DV E+ +AA+ L Sbjct: 180 VREDLVKNETLAGFATQYGFDKRVSVSALEDQRAQTKRWL-KIRGDVFEAYVAAVILSNP 238 Query: 131 --GIEVAGTFVDKYWKQRAL 148 G ++ ++ + W R L Sbjct: 239 LHGFDIVEKWLRELWLPRLL 258 >gi|302412551|ref|XP_003004108.1| ribonuclease [Verticillium albo-atrum VaMs.102] gi|261356684|gb|EEY19112.1| ribonuclease [Verticillium albo-atrum VaMs.102] Length = 426 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 6/127 (4%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 A + L TH ++ +YERLE+LGD ++ S+LLF F G+LS Sbjct: 159 AICDPKLETAVFTHYTVGPGL--NYERLEWLGDAYAEIISSSLLFRTFGGFSSGKLSQLR 216 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGI 132 L+ Q + + L +R +++ + + DV ES +AA+ L + G+ Sbjct: 217 ELLICNANLGQYSAQYGLVDRVRAPEEVKASKEKW-KKVPGDVFESYVAAVILSDPENGL 275 Query: 133 EVAGTFV 139 + AG ++ Sbjct: 276 QRAGEWL 282 >gi|255720468|ref|XP_002556514.1| KLTH0H15180p [Lachancea thermotolerans] gi|238942480|emb|CAR30652.1| KLTH0H15180p [Lachancea thermotolerans] Length = 494 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 3/92 (3%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD IL I+ +L+N F EG+LS L+S E + + +R + Sbjct: 225 ERLEFLGDSILNTTITMILYNKFPHLSEGQLSKLRMKLISNERLKKWSFLYKFNEKLRTN 284 Query: 101 SDLRKDVCSFMTSIQ---ADVVESLIAALYLD 129 D + F Q ADV E+ I L D Sbjct: 285 LDKTCENNDFKHGKQKLYADVFEAYIGGLIED 316 >gi|158706522|sp|Q4WVE3|DCL1_ASPFU RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent helicase dcl1 Length = 1537 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 4/123 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+ +GY F LL A+TH S+ ++ Y+RLEFLGD +L ++ LF F Sbjct: 1256 VEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPD 1315 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQADVVESLIA 124 LS ++VS + ++ +L I S+ L+ + ++ I+ ES A Sbjct: 1316 RDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQGA 1375 Query: 125 ALY 127 Y Sbjct: 1376 VDY 1378 >gi|327303976|ref|XP_003236680.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892] gi|326462022|gb|EGD87475.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892] Length = 1460 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 14/105 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S +E I Y+F ++LL +L+H S S +Y+RLEFLGD IL +++ LF Sbjct: 1179 SKVEPLIEYSFTKKALLAASLSHPSNPISGM-TYQRLEFLGDSILDNIVTRALFRCKKEI 1237 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS---DLRKDVC 108 ++ + +LV+A D +F+ +++ + R+DVC Sbjct: 1238 PHQDMHLIRTALVNA----------DFLAFLCMNTSTDETREDVC 1272 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 55/136 (40%), Gaps = 22/136 (16%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F N L+ A+T +S +Y+RLEFLGD L L S L EG LS + Sbjct: 1002 GFQNIQLVLTAITAASAREDI--NYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKK 1059 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDL--------------------RKDVCSFMTSIQ 115 +S+VS + A + L FI + K T Sbjct: 1060 DSIVSNSRLWKAAVDTGLDQFILTTCFTGAKWRPLYNSTYTNNAGKIGEKSTRELSTKTL 1119 Query: 116 ADVVESLIAALYLDGG 131 ADVVESLI A +DGG Sbjct: 1120 ADVVESLIGAAIIDGG 1135 >gi|302308935|ref|NP_986085.2| AFR538Cp [Ashbya gossypii ATCC 10895] gi|299790864|gb|AAS53909.2| AFR538Cp [Ashbya gossypii ATCC 10895] Length = 485 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 9/121 (7%) Query: 17 FANRSLLEKAL--THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 F +RSL L + + +S+ E RLEFLGD IL ++ +++N F EG LS Sbjct: 236 FTHRSLTNDKLYLDEAQMINSHNE---RLEFLGDSILNTTMTMIIYNKFPGFNEGRLSQL 292 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDL----RKDVCSFMTSIQADVVESLIAALYLDG 130 L++ + + + L S +R + ++ +V + + ADV E+ I L + Sbjct: 293 RTKLINNDRLKEWSFMYQLPSKLRTNIEMFNGTTHEVSNGKLKLYADVFEAYIGGLVEED 352 Query: 131 G 131 G Sbjct: 353 G 353 >gi|83772763|dbj|BAE62891.1| unnamed protein product [Aspergillus oryzae] Length = 1374 Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 21/140 (15%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+++GY F LL A TH S ++ + Y+RLEFLGD +L ++ LF + Sbjct: 1156 VEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPDK 1215 Query: 67 K-----EGELSVRF-------------NSLVSAETCSQVARELDLASFIR-VSSDLRKDV 107 E ++SVR ++VS + +A +L L + +R S+ L+ + Sbjct: 1216 DPQWLTEHKVSVRLFVSTKHLLTITLQMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQI 1275 Query: 108 CSFMTSIQADVVESLIAALY 127 + IQA ES A Y Sbjct: 1276 THYAEEIQAAENESQGAVDY 1295 >gi|134084339|emb|CAK48679.1| unnamed protein product [Aspergillus niger] Length = 1531 Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+++ Y F +LL A TH S ++ + Y+RLEFLGD ++ ++ LF F Sbjct: 1236 IEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDR 1295 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ 115 L+ ++VS + +A +L L + ++ S+ L+ + + IQ Sbjct: 1296 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQ 1345 >gi|119478976|ref|XP_001259517.1| RNase3 domain protein [Neosartorya fischeri NRRL 181] gi|158706438|sp|A1DE13|DCL1_NEOFI RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent helicase dcl1 gi|119407671|gb|EAW17620.1| RNase3 domain protein [Neosartorya fischeri NRRL 181] Length = 1538 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+ +GY F LL A+TH S+ ++ Y+RLEFLGD +L ++ LF F Sbjct: 1257 VEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPD 1316 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQADVVESLIA 124 L+ ++VS + ++ +L I S+ L+ + ++ I++ ES A Sbjct: 1317 RDPQWLTEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIESAQAESRGA 1376 Query: 125 ALY 127 Y Sbjct: 1377 VDY 1379 >gi|195995859|ref|XP_002107798.1| hypothetical protein TRIADDRAFT_51673 [Trichoplax adhaerens] gi|190588574|gb|EDV28596.1| hypothetical protein TRIADDRAFT_51673 [Trichoplax adhaerens] Length = 1418 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 29/52 (55%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 E+ +GY F N L A THSS +YE+LEF+GD IL L+ LF Sbjct: 1225 FEENLGYKFINIDYLILAFTHSSSEFGDSFNYEKLEFVGDSILNYLVIKYLF 1276 >gi|148985144|ref|ZP_01818383.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71] gi|147922589|gb|EDK73707.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71] Length = 79 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 14/63 (22%) Query: 7 STLEKRIGYAFANRSLLEKALTHSS---------ISHSYQESYERLEFLGDRILGLLIST 57 + L+ FA+++LLE A TH+S ISH+ ERLEFLGD +L LLIS Sbjct: 6 TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHN-----ERLEFLGDAVLQLLISE 60 Query: 58 LLF 60 L+ Sbjct: 61 YLY 63 >gi|121807816|sp|Q2VF18|DCL2_CRYPA RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease DCL-2; Includes: RecName: Full=ATP-dependent helicase DCL-2 gi|77632776|gb|ABB00357.1| dicer-like protein 2 [Cryphonectria parasitica] Length = 1451 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 63/139 (45%), Gaps = 24/139 (17%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 +N S+L +A+ S E+YER+EFLGD IL I+ L EG LS+ + Sbjct: 981 ISNVSMLVEAICAKSARTP--ENYERIEFLGDSILKTCITVNLAATKLHLPEGILSLMKD 1038 Query: 77 SLVSAETCSQVARELDLASFIRVS------------SDLRKD--------VCSFMTSIQA 116 LVS + A + +L F+ SDL K + S T A Sbjct: 1039 RLVSNARLCRAACDAELDQFLVTQQLVTKGWQPPYMSDLAKQDQEPESKRILSPKT--LA 1096 Query: 117 DVVESLIAALYLDGGIEVA 135 DVVE+LI ++DGG+ A Sbjct: 1097 DVVEALIGVSFVDGGLPKA 1115 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE+ I Y+F ++LL +A+TH S + S Y+RLEF+GD IL +I +F + + Sbjct: 1156 LEQLIEYSFCEKALLVEAVTHPSYNVSGTVACYDRLEFIGDAILDYIIVEEVFALEPALE 1215 Query: 68 EGELSVRFNSLVSAE 82 ++ + +LV+A+ Sbjct: 1216 NWQMHLLRTALVNAD 1230 >gi|196229195|ref|ZP_03128060.1| Ribonuclease III [Chthoniobacter flavus Ellin428] gi|196226427|gb|EDY20932.1| Ribonuclease III [Chthoniobacter flavus Ellin428] Length = 152 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 3/116 (2%) Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFG 170 S +D E+LI A+YLD V + L+ + K LQE A Sbjct: 16 STLSDAFEALIGAMYLDSDFVTVRRIVLTESRDLLEDLEVDPPDTNPKGRLQELLQAISP 75 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 ++P Y + +SGP+H RF + G G SK+ AE AA + L +E +W Sbjct: 76 ISPTYPIVDQSGPEHQKRFVAKIVWDGKELGSGDGRSKKEAETAAARDALSKE-LW 130 >gi|321456685|gb|EFX67786.1| hypothetical protein DAPPUDRAFT_115168 [Daphnia pulex] Length = 216 Score = 43.9 bits (102), Expect = 0.015, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 6/81 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E +GY F ++ L+ LTH S + + E +RLE LGD++LG L+ + + + Sbjct: 34 IETTLGYEFRHKENLKLPLTHISTNPNKVPSEDSDRLETLGDKLLGTLVMAICYTTCPTY 93 Query: 67 KEGELSVRFNSLVSAETCSQV 87 GEL+ +L S TC+ Sbjct: 94 GAGELT----NLTSMITCNDT 110 >gi|125570782|gb|EAZ12297.1| hypothetical protein OsJ_02188 [Oryza sativa Japonica Group] Length = 234 Score = 43.9 bits (102), Expect = 0.015, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 18/133 (13%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 A R+ +E+AL + ++RLEFLGD LGL +T+ + +G+L+V ++ Sbjct: 19 AARAEVERALGGDEAGGRAR--HQRLEFLGDAALGLAFATIFYRDDPGLDQGDLTVLRSA 76 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKD--VCSFMTSIQ--------------ADVVES 121 VS + ++VA L +R + +D V F S++ AD+VE+ Sbjct: 77 NVSTQKLARVAVRRRLYPLLRRYNCAPQDHEVSRFTKSVEGPYSGDPIEGPRVLADIVEA 136 Query: 122 LIAALYLDGGIEV 134 ++ A+YLD +++ Sbjct: 137 IVGAVYLDSKLDL 149 >gi|46132992|ref|XP_389201.1| hypothetical protein FG09025.1 [Gibberella zeae PH-1] Length = 1495 Score = 43.9 bits (102), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 14 GYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSA 66 GY F + LL+ A TH S ++S +Y+RLEFLGD ++ + I L+ +F A Sbjct: 1204 GYHFKSAPLLQSAFTHPSYAYSGNVPNYQRLEFLGDALIDMTIVEYLYRNFPLA 1257 >gi|47225094|emb|CAF98721.1| unnamed protein product [Tetraodon nigroviridis] Length = 1041 Score = 43.9 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 16/112 (14%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 S I+H+ ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A+ Sbjct: 917 SRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAK 971 Query: 90 ELDLASFIRVS--------SDLRKDVCSFMTSIQADVV---ESLIAALYLDG 130 +L+L F+ + SDLR + + ++ + + E + YL G Sbjct: 972 KLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGETLMRQEQTLCCFYLTG 1023 >gi|499371|gb|AAA21843.1| RNase III [Escherichia coli] Length = 45 Score = 43.9 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 3/48 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGD 48 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHN---ERLEFLGD 45 >gi|255953957|ref|XP_002567731.1| Pc21g06890 [Penicillium chrysogenum Wisconsin 54-1255] gi|211589442|emb|CAP95586.1| Pc21g06890 [Penicillium chrysogenum Wisconsin 54-1255] Length = 1495 Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust. Identities = 38/164 (23%), Positives = 74/164 (45%), Gaps = 28/164 (17%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +++GY F LL A TH S ++ + Y+RLEFLGD +L ++ LF+ F + Sbjct: 1217 EKVGYDFKYPRLLRSAFTHPSYPLAWAKVPCYQRLEFLGDALLDMVCVEHLFHRFPNRDP 1276 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ------------ 115 L+ ++VS + +A +L L ++ S+ L + IQ Sbjct: 1277 QWLTEHKMAMVSNKFLGALAVKLGLHLHLQHFSNPLMIQNSKYAEEIQLAESESNGEVDY 1336 Query: 116 -----------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 D++E+ + A+++D G + T ++ ++++ L Sbjct: 1337 WLSTSDSPKCLPDMLEAYLGAIFVDSGFDF--TVIEAFFQRHIL 1378 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 22/116 (18%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ++YERLE LGD +L + S LF E + V L+ + + A EL L +I Sbjct: 1046 KNYERLELLGDSVLKMATSISLFAQNPDDDEYDYHVNRMCLICNKNLFKNAIELKLYEYI 1105 Query: 98 R-------------VSSDLRKDVCSFMTS---------IQADVVESLIAALYLDGG 131 R +S + +D F+ S ADV E+LI A L GG Sbjct: 1106 RSRGFSRHMWYPPGLSLEYGRDHAKFIDSEGKHSLAEKTIADVCEALIGASLLSGG 1161 >gi|225457085|ref|XP_002280078.1| PREDICTED: similar to NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / ribonuclease III [Vitis vinifera] gi|297733813|emb|CBI15060.3| unnamed protein product [Vitis vinifera] Length = 183 Score = 43.5 bits (101), Expect = 0.020, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 +L TL+K+IGY F + LL +A+THSS S +E+ + L LG + +S Sbjct: 38 SLALETLQKQIGYTFQSIGLLRRAMTHSSFS---EENNKALSILGASTIETSVSLQYLKK 94 Query: 63 FDSAKEGELSVRFNSLVSAE-TCSQVARELDLASFIRVS 100 A +L+ R + + E +C+ A L L IRVS Sbjct: 95 DIEASAKDLNRRISEISQVESSCAVDAMRLGLQKVIRVS 133 >gi|322704697|gb|EFY96289.1| Dicer-like protein 1 [Metarhizium anisopliae ARSEF 23] Length = 1476 Score = 43.5 bits (101), Expect = 0.020, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 IGY F + LL A H S + + +Y+RLEFLGD +L + I LF + A L Sbjct: 1204 IGYNFRSPKLLRSAFKHPSYPYEPELPNYQRLEFLGDALLDVAIVDFLFQRYPLADPQWL 1263 Query: 72 SVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 + ++ S S + EL L I S + + F+ I+ ++ L LD Sbjct: 1264 TEHKMAMASNHFFSFLCVELGLHRHILSTGSSIMGHIAGFVEQIEKAKSQTEDGVLQLD 1322 >gi|145506903|ref|XP_001439412.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|74830350|emb|CAI39053.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia] gi|124406596|emb|CAK72015.1| unnamed protein product [Paramecium tetraurelia] Length = 632 Score = 43.5 bits (101), Expect = 0.020, Method: Compositional matrix adjust. Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 15/122 (12%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N ++E+A+ SS +++ +YE LE LGD +L +++ +F ++ EGE++ + L Sbjct: 340 NYQVVEEAIVTSS--SNFKRNYENLELLGDSVLKYVVTVDIFRQYELLDEGEMTSLRSRL 397 Query: 79 VSAETCSQVARELDLASFI--------RVSSDLRKDVCS-----FMTSIQADVVESLIAA 125 + +Q+ +L L +I ++ + L D+ S S +AD+ E+++ Sbjct: 398 IMNTFLAQLFEQLGLQHYIINQDLHFKQIRNPLVNDMISSDNKQLQISQKADIYEAIVGG 457 Query: 126 LY 127 ++ Sbjct: 458 VF 459 >gi|242033791|ref|XP_002464290.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor] gi|241918144|gb|EER91288.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor] Length = 1385 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 65/254 (25%), Positives = 100/254 (39%), Gaps = 60/254 (23%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFNH 62 +LE + Y F++ SLL +ALTH S YQ Y+RLEFLGD +L + + ++ Sbjct: 1134 SLELMLDYNFSDPSLLLEALTHGS----YQIAGTTACYQRLEFLGDAVLDHIFTDYFYHQ 1189 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF----------- 110 + L+ ++ V+ + A + L I SS L K + + Sbjct: 1190 YPECTPELLTDLRSASVNNSCYAHAAVKAGLHKHILHSSSALHKKMADYLDKFEQSFSGP 1249 Query: 111 ---------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--------SGKF 153 + + DV+ES+ A+Y+D T DK R +K Sbjct: 1250 SHGWEAGICLPKVLGDVIESIAGAIYID-------TKNDKKVVWRKMKRLLEPLATPDTL 1302 Query: 154 RRDAKTELQEWAHA-----KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCS 207 D EL E+ K+ V E +VT V V+ G A + Sbjct: 1303 EIDPVKELHEFCDPKTCSIKYTVAREDRVT---------SVAVEVQTKGTTYKATRTGLT 1353 Query: 208 KRAAEQVAAAEVLK 221 KR A+++AA VLK Sbjct: 1354 KRDAKKLAAKSVLK 1367 >gi|253741929|gb|EES98787.1| Dicer [Giardia intestinalis ATCC 50581] Length = 750 Score = 43.1 bits (100), Expect = 0.026, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 5/93 (5%) Query: 35 SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94 S+ + ++RLE LGD +LG +++ L F +A G L LV ET + + R L L Sbjct: 327 SHTDIFQRLELLGDAVLGFIVTARLLCLFPNASIGTLVELKMELVRNETLNHLTRMLGLP 386 Query: 95 SFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 +S+ L + AD+ E ++ +++ Sbjct: 387 QLAEISNQLLAS-----SKTWADMYEEIVGSIF 414 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 10/125 (8%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL+ ALT + Y++LE LGD L ++ L + EG L+ S S Sbjct: 631 LLQLALT--------PQVYQKLELLGDAFLKCSLALHLHTRHPTLTEGALTRMRQSAESN 682 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 + ++L + + V +D + + + D ES++AA+ L G E A +FV K Sbjct: 683 HVLGVLTKKLP-SPVLEVITDAHPGI-QPDSKVYGDTFESILAAVLLACGEEAASSFVRK 740 Query: 142 YWKQR 146 R Sbjct: 741 LVLPR 745 >gi|302422698|ref|XP_003009179.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102] gi|261352325|gb|EEY14753.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102] Length = 1510 Score = 43.1 bits (100), Expect = 0.026, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 34/156 (21%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 E AF + +LL A H S ++ +Y+RLEFLGD +L ++ LF F A Sbjct: 1223 EGNFDMAFKSPALLRSAFKHPSYPRQFESVPNYQRLEFLGDALLDMVCVDFLFRKFPDAD 1282 Query: 68 EGELSVRFNSLVSAETCSQVARELD----LASFIRVSSDLRKDVCSFMT----------- 112 L+ ++VS ++ EL + F V ++ KD +T Sbjct: 1283 PQWLTEHKMAMVSNHFLGSLSVELGFYRRVLHFSGVMANQIKDYVDALTHARQEAEAAAQ 1342 Query: 113 -----------SIQ------ADVVESLIAALYLDGG 131 ++Q +DVVE+ I A+++D G Sbjct: 1343 ISGVISQDYWLNVQHPPKFLSDVVEAYIGAIFVDSG 1378 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 68/186 (36%), Gaps = 44/186 (23%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 +YERLEFLGD L + + LF + E E V L+ + VA + +L +I Sbjct: 1110 NNYERLEFLGDCFLKMATTIALFTRIPDSNEFEYHVERMLLICNQNLFNVALKKNLQEYI 1169 Query: 98 RVSSDLRK------------------DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 R R+ + S ADV E++I A YL E G F Sbjct: 1170 RSKQFDRRSWYPQGLKQKAGKAQGAQNSHSLADKSIADVCEAMIGASYLSYADE--GNF- 1226 Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK----------------VTFRSGP 183 D +K AL F+ + +F P Y+ FR P Sbjct: 1227 DMAFKSPALLRSAFKHPSYPR-------QFESVPNYQRLEFLGDALLDMVCVDFLFRKFP 1279 Query: 184 DHDPRF 189 D DP++ Sbjct: 1280 DADPQW 1285 >gi|242033789|ref|XP_002464289.1| hypothetical protein SORBIDRAFT_01g015666 [Sorghum bicolor] gi|241918143|gb|EER91287.1| hypothetical protein SORBIDRAFT_01g015666 [Sorghum bicolor] Length = 462 Score = 43.1 bits (100), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHF 63 +L+ IGY F + SLL +ALTHSS + + ERLEFLGD +L +++ + + Sbjct: 221 SLQTIIGYVFDDSSLLIEALTHSSYNTAGITTCNERLEFLGDAVLDYILTDYFYRKY 277 >gi|238567352|ref|XP_002386225.1| hypothetical protein MPER_15614 [Moniliophthora perniciosa FA553] gi|215437540|gb|EEB87155.1| hypothetical protein MPER_15614 [Moniliophthora perniciosa FA553] Length = 116 Score = 43.1 bits (100), Expect = 0.028, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLF 60 +E IG+ F + LL +ALTH+S SYER+EFLGD +L ++++ L+ Sbjct: 8 VETIIGHTFKRKLLLVEALTHASHQQDLGTVSYERMEFLGDAVLDMIVNDYLY 60 >gi|330913942|ref|XP_003296428.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1] gi|311331414|gb|EFQ95479.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1] Length = 1572 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 26/148 (17%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 +E + Y F LL A H S + Y+ +Y+RLEFLGD +L + T L+ + Sbjct: 1284 IEAKHPYHFKYPRLLRSAFAHPSYPYIYENIPNYQRLEFLGDSLLDMAFITHLYYKYPDK 1343 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR-----VSSDLRKDV-------------C 108 L+ +VS + V +L +I+ ++S +R V Sbjct: 1344 DPQWLTEHKTPMVSNKFLGAVCVKLGWHVYIKQNTAILTSQIRDYVLEAQEAERESGGAV 1403 Query: 109 SFMTSIQ------ADVVESLIAALYLDG 130 + +I ADV+E+ AAL++D Sbjct: 1404 DYWVTISEPPKCLADVIEAYTAALFVDA 1431 >gi|321452752|gb|EFX64071.1| hypothetical protein DAPPUDRAFT_118569 [Daphnia pulex] Length = 344 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 15/81 (18%) Query: 7 STLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE++IGY F +++LL +ALTHSS ++ E LE LGD L L +N Sbjct: 66 TALEEKIGYEFKDKTLLGRALTHSSANVTKCPSRDGENLEVLGDASLDL---NPRYN--- 119 Query: 65 SAKEGELSVRFNSLVSAETCS 85 +G+LSV L SA TC+ Sbjct: 120 ---QGQLSV----LKSAITCN 133 >gi|170086892|ref|XP_001874669.1| predicted protein [Laccaria bicolor S238N-H82] gi|164649869|gb|EDR14110.1| predicted protein [Laccaria bicolor S238N-H82] Length = 353 Score = 42.7 bits (99), Expect = 0.033, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 63/160 (39%), Gaps = 23/160 (14%) Query: 7 STLEKRIGYA--FANRSLLEKALTHSSISHSYQESYER---------LEFLGDRILGLLI 55 S RIG A + L+++A TH S + Y + Y R L LG+ +LGL Sbjct: 60 SAFAHRIGLASILTSTDLIQQACTHPSFTALYSQHYPRETPPSTNAQLVILGNSLLGLFA 119 Query: 56 STLLFNHFDSAKEGELSVR-----FNSLVSAETCSQVARELDLASFIRVSSDLRKDV--C 108 + L +AK L R + V TC+ +A+E+ +R R Sbjct: 120 TEYL-----NAKYPYLPTRVQKAALTAHVGPATCASIAQEMGATPLVRWHRTPRTSTRPS 174 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 T A V +L A +Y + A FV Y+ R + Sbjct: 175 VLHTDALASVPRALTALVYQQRSLFSARKFVHSYFLSRQI 214 >gi|321259818|ref|XP_003194629.1| hypothetical protein CGB_F1490W [Cryptococcus gattii WM276] gi|317461101|gb|ADV22842.1| Hypothetical Protein CGB_F1490W [Cryptococcus gattii WM276] Length = 433 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 14/121 (11%) Query: 19 NRSLLEKALTHSSI-----------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +R LL + TH+S ++ E+LE +GD +LG +++ LL + + + Sbjct: 170 DRELLRQVFTHTSYVGARKQSALFDKEAFHHDNEKLEHVGDALLGCIVTCLLHDLYPNLN 229 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR-KDVCSFMTSIQADVVESLIAAL 126 G + V +T SQ++R + R+ +D+ ++ T A++ E+ +A L Sbjct: 230 PGNATEMKAICVCNQTLSQLSRRYKMPE--RLITDVNATEILKNGTKTTANIFEAYVAGL 287 Query: 127 Y 127 + Sbjct: 288 H 288 >gi|321448873|gb|EFX61617.1| hypothetical protein DAPPUDRAFT_272455 [Daphnia pulex] Length = 177 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 3/43 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRIL 51 LE + Y+F NR LL+ ALTH S +YERLEFLGD +L Sbjct: 138 LESILNYSFKNRGLLKGALTHRYFSAL---NYERLEFLGDIVL 177 Score = 35.0 bits (79), Expect = 8.4, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 19/145 (13%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 E+ GY F + +L +AL + S S + +RLE +GD +L L++ F + + Sbjct: 26 FEEIFGYKFKDEEMLHQALKRPTASLKSSVKKGDRLELVGDAVLDLIMIEECFERHVNYE 85 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS-------IQA--DV 118 G+LS L +T ++ A E + D + C M + I+A D Sbjct: 86 AGQLSGVKCELTCNDTLARKAEE--------IQPDYPPEKCPKMDTNWHVNYGIEATIDK 137 Query: 119 VESLIAALYLDGGIEVAGTFVDKYW 143 +ES++ + + G+ + G +Y+ Sbjct: 138 LESILNYSFKNRGL-LKGALTHRYF 161 >gi|163916108|gb|AAI57422.1| Double stranded RNA activated protein kinase 1 [Xenopus laevis] Length = 578 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 K G++ ++K +GP HDPRFT V ++G +G D K+ AE +AA L Sbjct: 16 KNGLSYQFKKVESTGPSHDPRFTFQVFVNGEKLGEGQDKKKKGAEYMAAKMAL 68 >gi|226294068|gb|EEH49488.1| Dicer [Paracoccidioides brasiliensis Pb18] Length = 1423 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 R+GY F LL A TH+S + + Y+RLEFLGD +L ++ L++ + Sbjct: 1146 RLGYRFKYPRLLSSAFTHASYPTGWSKVPCYQRLEFLGDSLLDMVCVEHLYHKYPDRDPQ 1205 Query: 70 ELSVRFNSLVSAETCSQVARELDL 93 L+ ++VS + VA +L L Sbjct: 1206 WLTEHKMAMVSNKFLGAVAVKLGL 1229 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 20/114 (17%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ++YERLEFLGD L + S LF E + V+ L+ + A L + F+ Sbjct: 976 KNYERLEFLGDCFLKMSTSISLFAMNADDDEFDFHVKRMCLICNQNLFNTAMSLGIYEFV 1035 Query: 98 RVS--------------------SDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 R S+ ++ S AD+ E+LI A L GG Sbjct: 1036 RTQGFSRRNWYPEGIKLLQGKAKSETAENKHSLADKSIADICEALIGASLLSGG 1089 >gi|164658275|ref|XP_001730263.1| hypothetical protein MGL_2645 [Malassezia globosa CBS 7966] gi|159104158|gb|EDP43049.1| hypothetical protein MGL_2645 [Malassezia globosa CBS 7966] Length = 294 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 56/138 (40%), Gaps = 20/138 (14%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR-----F 75 +L+ ALTH S H Q RL F+G R L +S F+ + A+ SV Sbjct: 117 TLVSHALTHESWMHGMQGHNRRLAFIGRRALKTYLSLFFFDILEHARRTNSSVSDVEYLQ 176 Query: 76 NSLVSAETCSQVAR----------ELDLASFIRVSSDLRKDVC-----SFMTSIQADVVE 120 N L S + +A L L +R S +R D S + ++ VE Sbjct: 177 NLLSSQQHVDDIASTHHLGIVSAANLCLEKVMRWHSTVRMDPVSGPQESGLFKVRGSCVE 236 Query: 121 SLIAALYLDGGIEVAGTF 138 LI A+Y G +VA F Sbjct: 237 GLIGAIYHYKGAQVAQQF 254 >gi|284054885|ref|ZP_06385095.1| ribonuclease III [Arthrospira platensis str. Paraca] Length = 131 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%) Query: 116 ADVVESLIAALYLDGG-IEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVT 172 AD E+++AALYL +E+ ++D + +RA + + R++ K LQEW + + + Sbjct: 11 ADCFEAVLAALYLSTNTLELIRPWLDPHLLERATEIFNDPARQNYKAALQEWTQSCYKIL 70 Query: 173 PEYKVTFRSGPDHDPRFTVVV 193 P+YKV + RFT V Sbjct: 71 PQYKVNETGYAGDEGRFTASV 91 >gi|269115408|gb|ACZ26274.1| dicer-1-like protein [Mayetiola destructor] Length = 227 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 9/123 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y +EK++ Y F ++S + +A +H S + + +Y+ L+F+GD I+ L+ LF Sbjct: 8 YEQIEKKLNYTFRDKSFMLQAFSHESFTANDICPNYDSLDFVGDGIINYLLCRHLFREAG 67 Query: 65 ---SAKEGELSVRFNSLVSAETC-SQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVV 119 SA E E F + + + C + V+ + +F R + + L + SF+ +Q + Sbjct: 68 GQFSANEIEF---FTNTLKSNCCFATVSIRHGIHNFFRLMDTKLNGSLASFVKFVQKNQC 124 Query: 120 ESL 122 + + Sbjct: 125 QPI 127 >gi|225684422|gb|EEH22706.1| dicer [Paracoccidioides brasiliensis Pb03] Length = 1469 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 R+GY F LL A TH+S + + Y+RLEFLGD +L ++ L++ + Sbjct: 1207 RLGYRFKYPRLLSSAFTHASYPTGWSKVPCYQRLEFLGDSLLDMVCVEHLYHKYPDRDPQ 1266 Query: 70 ELSVRFNSLVSAETCSQVARELDL 93 L+ ++VS + VA +L L Sbjct: 1267 WLTEHKMAMVSNKFLGAVAVKLGL 1290 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 20/114 (17%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ++YERLEFLGD L + S LF E + V+ L+ + A L + F+ Sbjct: 1037 KNYERLEFLGDCFLKMSTSISLFAMNADDDEFDFHVKRMCLICNQNLFNTAMSLGIYEFV 1096 Query: 98 RVS--------------------SDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 R S+ ++ S AD+ E+LI A L GG Sbjct: 1097 RTQGFSRRNWYPEGIKLLQGKAKSETAENKHSLADKSIADICEALIGASLLSGG 1150 >gi|39965953|ref|XP_365151.1| hypothetical protein [Magnaporthe oryzae 70-15] gi|145015378|gb|EDJ99914.1| predicted protein [Magnaporthe oryzae 70-15] Length = 147 Score = 42.4 bits (98), Expect = 0.046, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 15/136 (11%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS---------HSYQESYERLEFLGDRILGLLISTLL 59 ++ +IG+ F N+ L ++ALT + ++ H + + L +GD IL I L Sbjct: 8 IQTKIGHTFGNQRLCDEALTAAGVTLRMSATSQVH-HLDGNAALALIGDGIL--QIGVGL 64 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + +GE S R ++VS + + + L + + + + S T +A VV Sbjct: 65 RSRGLGESKGEASDRLKNIVSNKNLASIFDTAQLGPHV-IGNPSQWGAISAKT--KATVV 121 Query: 120 ESLIAALYLDGGIEVA 135 E+L+ A+Y+D GIE A Sbjct: 122 EALLGAVYVDAGIEAA 137 >gi|255524266|ref|ZP_05391225.1| ribonuclease III [Clostridium carboxidivorans P7] gi|255512091|gb|EET88372.1| ribonuclease III [Clostridium carboxidivorans P7] Length = 96 Score = 42.4 bits (98), Expect = 0.048, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF-NH 62 + LE+++ F ++ LL+ ALTHSS ++ + + ERLEFLGD +L + IS LF N+ Sbjct: 14 FVELEQKLDVCFEDKELLKIALTHSSYANGKKNIKFNERLEFLGDSVLQISISEYLFLNY 73 Query: 63 FDSAKEGEL 71 KE L Sbjct: 74 SKKLKENLL 82 >gi|219852808|ref|YP_002467240.1| ribonuclease III [Methanosphaerula palustris E1-9c] gi|219547067|gb|ACL17517.1| ribonuclease III [Methanosphaerula palustris E1-9c] Length = 160 Score = 42.4 bits (98), Expect = 0.048, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 5/128 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYER----LEFLGDRILGLLISTLLFNHFD 64 LE+RI Y F +++ ++ALT + + +R L LGD ++ LL+ L Sbjct: 10 LERRIKYRFIDQAHPQRALTRLAFAGEQHFEDDRDMDALATLGDAVIDLLVIDDLLRT-G 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 ++GE++V V+ +A LDLA + + A+ E++I Sbjct: 69 VTRKGEITVLKVRRVNMSVLRSIAESLDLAPLVFWGKGEETQQVWLSGRVLAECCEAVIG 128 Query: 125 ALYLDGGI 132 A++LDGG+ Sbjct: 129 AVFLDGGL 136 >gi|327282012|ref|XP_003225738.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A-like [Anolis carolinensis] Length = 329 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 1/99 (1%) Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AAL + G V V + A+ + + + LQE A K PEY + +GP Sbjct: 113 AALNIMKGNSVVCIAVPDHLIPGAVNQAQNKTNPVGSLQELAIQKGWKLPEYSMAQETGP 172 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H FTV I GM SK+ A++ AA ++L++ Sbjct: 173 PHKREFTVTCRIEAFV-ETGMGTSKKLAKRNAAEKLLRK 210 >gi|189205613|ref|XP_001939141.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187975234|gb|EDU41860.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 1572 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 26/148 (17%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 +E + Y F LL A H S + Y+ +Y+RLEFLGD +L + T L+ + Sbjct: 1284 IEAKHPYHFKYPRLLRSAFAHPSYPYIYENIPNYQRLEFLGDSLLDMAFITHLYYKYPDK 1343 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR-----VSSDLRKDV-------------C 108 L+ +VS + V +L +I+ ++S +R V Sbjct: 1344 DPQWLTEHKTPMVSNKFLGAVCVKLGWHVYIKQNTAILTSQIRDYVLEAQEAEREASSAV 1403 Query: 109 SFMTSIQ------ADVVESLIAALYLDG 130 + +I ADV+E+ AA+++D Sbjct: 1404 DYWVTISEPPKCLADVIEAYTAAIFVDA 1431 >gi|58268964|ref|XP_571638.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|134112802|ref|XP_774944.1| hypothetical protein CNBF1090 [Cryptococcus neoformans var. neoformans B-3501A] gi|50257592|gb|EAL20297.1| hypothetical protein CNBF1090 [Cryptococcus neoformans var. neoformans B-3501A] gi|57227873|gb|AAW44331.1| expressed protein [Cryptococcus neoformans var. neoformans JEC21] Length = 418 Score = 42.0 bits (97), Expect = 0.057, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 14/121 (11%) Query: 19 NRSLLEKALTHSSI-----------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +R LL + TH+S ++ E+LE +GD +LG +++ LL + + + Sbjct: 155 DRELLRQVFTHTSYVGARKQSALFDKEAFHHDNEKLEHVGDALLGCIVTCLLHDLYPNLN 214 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR-KDVCSFMTSIQADVVESLIAAL 126 G + V +T SQ++R + R+ +D+ ++ T A++ E+ +A L Sbjct: 215 PGNATEMKAICVCNQTLSQLSRRYKMPE--RLITDVNATEILKNGTKTTANIFEAYVAGL 272 Query: 127 Y 127 + Sbjct: 273 H 273 >gi|168046558|ref|XP_001775740.1| predicted protein [Physcomitrella patens subsp. patens] gi|162672892|gb|EDQ59423.1| predicted protein [Physcomitrella patens subsp. patens] Length = 792 Score = 42.0 bits (97), Expect = 0.057, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 12/118 (10%) Query: 8 TLEKRIGYAFANRSLL--------EKALTHSSISH-SYQESYERLEFLGDRILGLLISTL 58 TLEK+IGY F +SLL E T S + S+Q ++RLEFLGD +L LI Sbjct: 542 TLEKKIGYQFKCKSLLLSAFDYGDEVTFTQSGVPRGSFQ--FQRLEFLGDSVLDFLIMRH 599 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ 115 + + +L+ + V++E + A ++ R+S LR ++ + S+ Sbjct: 600 FVQLYSAFNPEQLNDLRQATVNSENFACTAIRHGFHHYLKRMSPILRDEIELYAASVH 657 >gi|145523303|ref|XP_001447490.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124415001|emb|CAK80093.1| unnamed protein product [Paramecium tetraurelia] Length = 419 Score = 42.0 bits (97), Expect = 0.058, Method: Compositional matrix adjust. Identities = 47/241 (19%), Positives = 107/241 (44%), Gaps = 36/241 (14%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLL 59 + RI + F N ++L +ALT+ YQ + E +G IL S L Sbjct: 89 MNNRI-FRFQNTNILAQALTNKIHELEYQSKKGTKYPFGNNEEFIVIGQMILEFYFSDYL 147 Query: 60 ----FNHFDSA--KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD--LRKDVCSFM 111 + DS+ K +L + L++ + +++A + ++ +F+++ + L+K+ Sbjct: 148 MQRGYPKKDSSIKKPSDLVLLRQRLLNDKNLAEIAIQYNVHNFVQIGNQTALKKN----- 202 Query: 112 TSIQADVVESLIAALYLDGGIEVAGT----------FVDKYWKQRALKSGKFRRDAKTEL 161 + + A+ +++++AA Y D G ++ T +DK + + + +++ KT Sbjct: 203 SKVLAETLKAMVAAQYYDSGFDLEHTREILQSILKELLDK---GQNVPIAELKQNPKTSF 259 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 E+ + + + P+ V ++ + + + +E+ +KR EQ+ E LK Sbjct: 260 LEYINNQTDLIPKVSVEWKKDENSINVYKIQLELDSYINITKTGANKRQTEQLVYQEALK 319 Query: 222 R 222 + Sbjct: 320 Q 320 >gi|310794641|gb|EFQ30102.1| RNase3 domain-containing protein [Glomerella graminicola M1.001] Length = 1447 Score = 42.0 bits (97), Expect = 0.061, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLF 60 LE IGY F ++LL +A+TH+S + ERLEF+GD +L ++ LF Sbjct: 1142 LEHLIGYKFDRKTLLIQAMTHASFNLGNPFGCLERLEFMGDSVLDYVVVNRLF 1194 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 19/137 (13%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 A ++ SL+ A++ S S +YER+EFLGD IL + + E LS Sbjct: 968 AISDLSLILTAISTGSASEP--TNYERIEFLGDSILKFSATINVAALNPQWPERLLSFHK 1025 Query: 76 NSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFMTSIQADV 118 +++VS T + A + L +I +S K + T AD+ Sbjct: 1026 DAIVSNSTLCKAAVKHGLDRYILTKPFTGQKWRPIYVDSVLSRGEDKSMRKMSTKTLADI 1085 Query: 119 VESLIAALYLDGGIEVA 135 VE+LI A +DGG++ A Sbjct: 1086 VEALIGASMIDGGLDKA 1102 >gi|147906536|ref|NP_001091256.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Xenopus laevis] gi|121308150|emb|CAM07152.1| double stranded RNA activated protein kinase 1 [Xenopus laevis] Length = 578 Score = 42.0 bits (97), Expect = 0.063, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 K G++ ++K +GP HDPRFT V ++G +G D K+ AE +AA L Sbjct: 16 KNGLSYQFKKVEATGPSHDPRFTFQVFVNGEKLGEGQDKKKKGAECMAAKMAL 68 >gi|302845712|ref|XP_002954394.1| hypothetical protein VOLCADRAFT_106340 [Volvox carteri f. nagariensis] gi|300260324|gb|EFJ44544.1| hypothetical protein VOLCADRAFT_106340 [Volvox carteri f. nagariensis] Length = 2391 Score = 42.0 bits (97), Expect = 0.065, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 6/56 (10%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLF 60 +E+ +G+ FA+ L +ALTH +SH S Y+R+EFLGD +LG++ S F Sbjct: 2112 VEELLGHTFAHPKLCVQALTH--VSHPTASSCGGGYQRVEFLGDGVLGMVASVWAF 2165 >gi|67925688|ref|ZP_00519002.1| Ribonuclease III [Crocosphaera watsonii WH 8501] gi|67852471|gb|EAM47916.1| Ribonuclease III [Crocosphaera watsonii WH 8501] Length = 328 Score = 41.6 bits (96), Expect = 0.081, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 15/146 (10%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHF 63 S ++++I + F N LL +L+ S + +RLE LG+ +L L+I L++HF Sbjct: 6 SLVQEKISFNFKNTDLLFLSLSDPSYGKQINQPDSDNQRLESLGENLLALIIIDYLYHHF 65 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLA---SFIRVSSD---LR-KDVCSFMTSIQA 116 +++ + L+ E + + L L F+ V+ + LR K F S++A Sbjct: 66 PYLTLSKMTALQDKLLDKEKLTNLWFSLGLGESYPFLDVNQERHRLRVKTTNPFEKSLKA 125 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKY 142 L+AA+++D G + + +K+ Sbjct: 126 -----LVAAIHVDRGFSHSYNWFNKH 146 >gi|88602406|ref|YP_502584.1| ribonuclease III [Methanospirillum hungatei JF-1] gi|88187868|gb|ABD40865.1| RNAse III [Methanospirillum hungatei JF-1] Length = 151 Score = 41.6 bits (96), Expect = 0.084, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 5/137 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ GY F ++SLL +ALT + S S + L LGD ++ L+I T L + Sbjct: 10 LERITGYTFRDKSLLLRALTRLAYSKEQGLSEDSHLDALATLGDAVIELIILTRLVKGGE 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 K G +S++ LV+ AR + L ++R + + A+ +E+ Sbjct: 70 HDK-GAVSLKKMDLVNMSVLRDAARSIHLEQYVRWGKGEARMHVWTSGRVLAECMEAFAG 128 Query: 125 ALYLDGGIEVAGTFVDK 141 ALYLDGGI+ A +++ Sbjct: 129 ALYLDGGIDAAEEVLER 145 >gi|307109321|gb|EFN57559.1| hypothetical protein CHLNCDRAFT_143199 [Chlorella variabilis] Length = 2232 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 32/50 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 +E +G+ FA++ L+ +ALTH S S ++RLEFLGD +L L+ + Sbjct: 1928 IEAVLGHTFASKWLVVEALTHCSWPGSGVRCFQRLEFLGDAVLDALMHDM 1977 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 15/109 (13%) Query: 42 RLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-- 99 RLE LGD L +S LF+ EG+L+ R +V+ ++ A +L L +RV Sbjct: 1765 RLETLGDAFLKFAVSAQLFSAHRQYHEGQLTKRKELVVANIHLAEAAVKLGLDRRLRVLP 1824 Query: 100 --------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 +RK + + AD +E+L+ A + GG A F+ Sbjct: 1825 FSMHNWASPEAVRKS-----SKVLADAMEALLGAFLVAGGYPAALAFLQ 1868 >gi|158706454|sp|Q0CW42|DCL1_ASPTN RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent helicase dcl1 Length = 1519 Score = 41.2 bits (95), Expect = 0.100, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+++GY F LL A TH S ++ Y+ LEFLGD +L ++ LF F Sbjct: 1238 VEEKLGYHFRYPRLLHSAFTHPSYPSAWARVPCYQSLEFLGDALLDMVCVEDLFRRFPDR 1297 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFI 97 L+ ++VS + +A +L L + + Sbjct: 1298 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHL 1328 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 29/61 (47%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ++YERLEFLGD L + S LFN E + V L+ A + +L FI Sbjct: 1069 KNYERLEFLGDCFLKMATSISLFNQHPDDNEFDYHVNRMCLICNRNLFNSAVKKELYQFI 1128 Query: 98 R 98 R Sbjct: 1129 R 1129 >gi|194665306|ref|XP_581374.4| PREDICTED: adenosine deaminase, RNA-specific [Bos taurus] gi|297472608|ref|XP_002686059.1| PREDICTED: RNA adenosine deaminase-like [Bos taurus] gi|296489763|gb|DAA31876.1| RNA adenosine deaminase-like [Bos taurus] Length = 1149 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ T L E H K G + E+++ R GP HDP+F V + SK+AA+Q+ Sbjct: 562 KNPVTTLLECVH-KLGSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKAAKQM 620 Query: 215 AAAEVLK 221 AA E +K Sbjct: 621 AAEEAMK 627 >gi|195116871|ref|XP_002002975.1| GI17670 [Drosophila mojavensis] gi|193913550|gb|EDW12417.1| GI17670 [Drosophila mojavensis] Length = 96 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%) Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV--VE 120 F +EG L++ ++V + C+ +A++L L F+ + L D+C + A V E Sbjct: 2 FPEQEEGGLAMYSAAIVQNQHCALLAKKLQLEEFMLYAQGL--DMCHELELRHAMVSCFE 59 Query: 121 SLIAALYLDGGIEVAGTFVDKYW 143 L+ A+ LDGGI VA ++W Sbjct: 60 DLMGAILLDGGIMVADEVFTRFW 82 >gi|115387529|ref|XP_001211270.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114195354|gb|EAU37054.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 1344 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+++GY F LL A TH S ++ Y+ LEFLGD +L ++ LF F Sbjct: 1212 VEEKLGYHFRYPRLLHSAFTHPSYPSAWARVPCYQSLEFLGDALLDMVCVEDLFRRFPDR 1271 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFI 97 L+ ++VS + +A +L L + + Sbjct: 1272 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHL 1302 Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 29/61 (47%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ++YERLEFLGD L + S LFN E + V L+ A + +L FI Sbjct: 1043 KNYERLEFLGDCFLKMATSISLFNQHPDDNEFDYHVNRMCLICNRNLFNSAVKKELYQFI 1102 Query: 98 R 98 R Sbjct: 1103 R 1103 >gi|145540581|ref|XP_001455980.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|74834199|emb|CAI44479.1| Dicer-like ribonuclease with helicase and Rnase III domains [Paramecium tetraurelia] gi|124423789|emb|CAK88583.1| unnamed protein product [Paramecium tetraurelia] Length = 1797 Score = 41.2 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 72/195 (36%) Query: 7 STLEKRIGYAFANRSLLEKALTHSS----------------------------ISHSYQE 38 ++LE IGY F ++S+L +A+TH S IS+ Q Sbjct: 1501 NSLENIIGYKFNDQSILIQAITHQSFLSVLDFYNYRKCKCNFVEFQNTKNILQISNLNQN 1560 Query: 39 -------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 SYERLEFLGD +L ++ L F+ K +L+++ +V Sbjct: 1561 DINESLLTQLNQQQNRIDMSYERLEFLGDSVLDSVVVEWLVKEFNKEKVEDLALKKQCVV 1620 Query: 80 SAETCSQVARELDLASFI--------------------RVSSDLRKDVCSFMTS-----I 114 + + V L F+ ++ ++ D+ TS I Sbjct: 1621 CNKALALVTLHYKLDQFLLHPTLHKVAHENHQTLNKIKQMYNEYYDDISKMYTSEPIIKI 1680 Query: 115 QADVVESLIAALYLD 129 DV ES++ A+++D Sbjct: 1681 LGDVFESIVGAIFVD 1695 >gi|311254196|ref|XP_003125793.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like, partial [Sus scrofa] Length = 1171 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ T L E H K G + E+++ R GP HDP+F V + SK+AA+Q+ Sbjct: 584 KNPVTTLLECVH-KLGSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKAAKQL 642 Query: 215 AAAEVLK 221 AA E +K Sbjct: 643 AAEEAMK 649 >gi|297794783|ref|XP_002865276.1| hypothetical protein ARALYDRAFT_494464 [Arabidopsis lyrata subsp. lyrata] gi|297311111|gb|EFH41535.1| hypothetical protein ARALYDRAFT_494464 [Arabidopsis lyrata subsp. lyrata] Length = 892 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 6/85 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +EK + Y+F N++LL+ A+T S ++RLEF GD +L + + + + + + K Sbjct: 7 VEKILNYSFTNKTLLKDAITQRSTL------FDRLEFFGDSVLEVAFTNYIRHTYPNLKV 60 Query: 69 GELSVRFNSLVSAETCSQVARELDL 93 EL + VS E ++VA L + Sbjct: 61 KELCDLRTANVSNEKFARVAEILQI 85 Score = 36.2 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 5/97 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + +EK + Y+F N++LL + LTH++ ++RL F+G+ L L + L+ Sbjct: 345 MDSDSVEAVEKILNYSFVNKNLLNELLTHNT-----SPLFQRLMFVGEPALSLAFTKHLY 399 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 + + +LS+ ++ + ++VA + + FI Sbjct: 400 LTYPKLEPKDLSLLRDANACNDRYARVAVKKGIYQFI 436 >gi|118370147|ref|XP_001018276.1| Dicer-related RNase III protein Dcr1p, putative [Tetrahymena thermophila] gi|89300043|gb|EAR98031.1| Dicer-related RNase III protein Dcr1p, putative [Tetrahymena thermophila SB210] Length = 1903 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 4/52 (7%) Query: 7 STLEKRIGYAFANRSLLEKAL---THSSISHSYQESYERLEFLGDRILGLLI 55 S EK + Y F ++SLL KAL ++S+ H +Q+ Y+ LEFLGD ++ +L+ Sbjct: 1640 SGFEKILNYTFKDKSLLIKALNCHSNSNFEHYFQD-YQILEFLGDALIEILV 1690 >gi|330889503|gb|EGH22164.1| ribonuclease III [Pseudomonas syringae pv. mori str. 301020] Length = 52 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 3/48 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL 54 S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + Sbjct: 6 SRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFV 50 >gi|294464151|gb|ADE77592.1| unknown [Picea sitchensis] Length = 505 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE A PEYK T R GPDH PRF V +G A C Q AAA Sbjct: 3 KNRLQEVAQKHCVSLPEYKST-REGPDHAPRFKATVTYNGRAFESPAFCKTAKEAQNAAA 61 Query: 218 E 218 E Sbjct: 62 E 62 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 LQE+A + PEY VT RSGP H P F V+ +G A SK+ AE+ AA Sbjct: 350 LQEFAQKEGIPFPEY-VTDRSGPSHIPIFKSTVKFAGTTFAGKEANSKKQAEKNAA 404 >gi|257058554|ref|YP_003136442.1| ribonuclease III [Cyanothece sp. PCC 8802] gi|256588720|gb|ACU99606.1| ribonuclease III [Cyanothece sp. PCC 8802] Length = 323 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 7/141 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHF 63 S++E +IG F N LL L H S + E ERLE+LG+ IL L+I+ L+ + Sbjct: 6 SSVEDKIGINFKNSELLFLCLIHPSYAQQINEPEKDNERLEYLGETILRLVITDYLYQNC 65 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLA---SFIRVSSDLRKDVCSFMTSIQADVVE 120 +LS + L E + + L L F+ + D R + + ++ Sbjct: 66 PYLAVSKLSALRDKLEEGERLTTLWFNLGLGETFPFLAL-KDERYRLKIKRNNPFEKALK 124 Query: 121 SLIAALYLDGGIEVAGTFVDK 141 +L+ AL +D G +++K Sbjct: 125 ALVGALEIDRGYSQTYNWLNK 145 >gi|218245517|ref|YP_002370888.1| ribonuclease III [Cyanothece sp. PCC 8801] gi|218165995|gb|ACK64732.1| ribonuclease III [Cyanothece sp. PCC 8801] Length = 323 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 7/141 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHF 63 S++E +IG F N LL L H S + E ERLE+LG+ IL L+I+ L+ + Sbjct: 6 SSVEDKIGINFKNSELLFLCLIHPSYAQQINEPEKDNERLEYLGETILRLVITDYLYQNC 65 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLA---SFIRVSSDLRKDVCSFMTSIQADVVE 120 +LS + L E + + L L F+ + D R + + ++ Sbjct: 66 PYLAVSKLSALRDKLEEGERLTTLWFNLGLGETFPFLAL-KDERYRLKIKRNNPFEKALK 124 Query: 121 SLIAALYLDGGIEVAGTFVDK 141 +L+ AL +D G +++K Sbjct: 125 ALVGALEIDRGYSQTYNWLNK 145 >gi|114654623|ref|XP_510148.2| PREDICTED: dicer1 isoform 7 [Pan troglodytes] Length = 1715 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372 >gi|323126808|gb|ADX24105.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 79 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 4/49 (8%) Query: 16 AFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 F + +LLE A TH+S ++ ++ ERLEFLGD +L L+IS LF Sbjct: 15 CFEDHTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLF 63 >gi|50897087|dbj|BAD34724.1| Dicer-related RNase III protein Dcl1p [Tetrahymena thermophila] Length = 1275 Score = 40.8 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 4/52 (7%) Query: 7 STLEKRIGYAFANRSLLEKAL---THSSISHSYQESYERLEFLGDRILGLLI 55 S EK + Y F ++SLL KAL ++S+ H +Q+ Y+ LEFLGD ++ +L+ Sbjct: 1012 SGFEKILNYTFKDKSLLIKALNCHSNSNFEHYFQD-YQILEFLGDALIEILV 1062 >gi|158706448|sp|Q0UI93|DCL1_PHANO RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease DCL1; Includes: RecName: Full=ATP-dependent helicase DCL1 Length = 1522 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 28/164 (17%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 +E + Y F LL A H S ++ SY+RLEFLGD +L + LF + Sbjct: 1225 IEMKHPYRFRYPRLLRSAFIHPSQPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYKYPDK 1284 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR-----VSSDLRKDV-------------C 108 L+ +VS + V +L + ++ +SS +R V Sbjct: 1285 DPQWLTEHKTPMVSNKFLGAVCVKLGWHTHMKQNTAILSSQIRDYVYEVEEAEREANGAV 1344 Query: 109 SFMTSIQ------ADVVESLIAALYLDGGIE--VAGTFVDKYWK 144 + S+ ADV+E+ +AA+++D + V F D + K Sbjct: 1345 DYWVSVSEPPKCLADVIEAFVAAIFVDSEFDFNVVQKFFDLHLK 1388 >gi|295670335|ref|XP_002795715.1| RNase3 domain-containing protein [Paracoccidioides brasiliensis Pb01] gi|226284800|gb|EEH40366.1| RNase3 domain-containing protein [Paracoccidioides brasiliensis Pb01] Length = 1346 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 8/101 (7%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ++YERLEFLGD L + S LF E + V+ L+ + A L + F+ Sbjct: 944 KNYERLEFLGDCFLKMSTSISLFAMNADNDEFDFHVKRMCLICNQNLFNTAMSLGIYEFV 1003 Query: 98 RVSSDLRKD-------VCSFMTSIQADVVESLIAALYLDGG 131 R R++ + SI AD+ E+LI A L GG Sbjct: 1004 RTQGFSRRNWYPEGIKLLQADKSI-ADICEALIGASLLSGG 1043 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63 R+GY F LL A TH+S + + Y+RLEFLGD +L ++ L++ + Sbjct: 1100 RLGYRFKYPRLLSSAFTHASYPTVWSKVPCYQRLEFLGDSLLDMVCVEHLYHKY 1153 >gi|33322810|gb|AAQ07140.1|AF496451_1 ribonuclease III [Lactobacillus delbrueckii subsp. lactis] Length = 107 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 4/91 (4%) Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 +S L+ HF EGEL+ +++V E S+VA + ++ K ++ Sbjct: 2 VSDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKKEXKLGVGEEKAGGRKRKAL 61 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 DV E+ AL+LD GIE V+K+ KQ Sbjct: 62 LEDVFEAFNGALFLDQGIEA----VEKFLKQ 88 >gi|115478498|ref|NP_001062844.1| Os09g0315100 [Oryza sativa Japonica Group] gi|113631077|dbj|BAF24758.1| Os09g0315100 [Oryza sativa Japonica Group] Length = 245 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLIS 56 +LE +GY F + LL +ALTH S S S Y+RLEFLGD IL L + Sbjct: 191 SLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFT 240 >gi|330982830|gb|EGH80933.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 49 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 3/46 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG 52 S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL Sbjct: 6 SRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILN 48 >gi|224613141|dbj|BAH24245.1| dsRNA-specific ribonuclease RNaseIII [Korean potato witches'-broom phytoplasma] Length = 163 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 11/137 (8%) Query: 88 ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI----EVAGTFVDKYW 143 A+E+ L ++I + +K + SI +D E+L A+YLD G ++ V Y Sbjct: 22 AKEIKLKNYILLGKGEKKRYDN-NYSIISDAFEALFGAIYLDLGFNQTQKIFHNIVLPY- 79 Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 LK D KT+LQE YK+ G H+ F V + +G Sbjct: 80 ----LKKVINIIDFKTKLQELIQTNRH-NINYKIVSEQGLAHEKEFITEVYLEEQFLGRG 134 Query: 204 MDCSKRAAEQVAAAEVL 220 M +K+A+EQ AA + L Sbjct: 135 MGKTKKASEQKAAQQAL 151 >gi|322511164|gb|ADX06477.1| putative ribonuclease III [Organic Lake phycodnavirus 2] Length = 92 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 37 QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 Q S ERLEF+GD IL ++ L+ F A EG ++ + +LV + ++A +L L + Sbjct: 15 QSSNERLEFIGDGILEMITKYYLYKRFPDADEGFMTEKKINLVKNDHIGKLAYKLGLHKW 74 Query: 97 IRVS 100 + +S Sbjct: 75 LLLS 78 >gi|321463701|gb|EFX74715.1| hypothetical protein DAPPUDRAFT_108624 [Daphnia pulex] Length = 257 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 26/44 (59%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG 52 LE + Y F N+ L +AL H S + ES ++ EFLGD+ LG Sbjct: 100 LETILKYKFTNKLFLLQALRHPSAVSALDESNDKFEFLGDKQLG 143 >gi|149234499|ref|XP_001523129.1| hypothetical protein LELG_05675 [Lodderomyces elongisporus NRRL YB-4239] gi|146453238|gb|EDK47494.1| hypothetical protein LELG_05675 [Lodderomyces elongisporus NRRL YB-4239] Length = 729 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 78/176 (44%), Gaps = 23/176 (13%) Query: 21 SLLEKALTHSSISHS---------YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 +L EK H S ++ + ERLEF GD IL LI+ +++N F + EGEL Sbjct: 360 ALYEKVFVHKSTVNNRTYLGSDALIHKHNERLEFYGDSILNNLITIIIYNKFPNNTEGEL 419 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF-MTSIQADVVESLIAALYLDG 130 S ++++ ++A + +R D +DV + I ADV E+ I AL L+ Sbjct: 420 SKIRAAMINNRVLKEIAVDYGFDKKLRTRID--QDVLNLGEQKIYADVFEAYIGALGLER 477 Query: 131 GI---EVAGTFVDKYWK-----QRALKSGKFRRDAKTELQEWAHAKFG-VTPEYKV 177 EV Y K QR RDAK EL ++ G + P YKV Sbjct: 478 QFDLKEVKDWLEILYAKRIADLQREYIKDPLDRDAKAEL--YSMIGTGDLHPTYKV 531 >gi|47210542|emb|CAF93934.1| unnamed protein product [Tetraodon nigroviridis] Length = 1479 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1347 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1404 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1405 KVSNCNLYRLGKKKGLPSRMVVS 1427 >gi|224135779|ref|XP_002322158.1| predicted protein [Populus trichocarpa] gi|222869154|gb|EEF06285.1| predicted protein [Populus trichocarpa] Length = 160 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 6/95 (6%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 TL+ + GYAF N L +A+THSS S +E+ + L LG ++ +S Sbjct: 20 TLQNQTGYAFKNIGYLRRAMTHSSFS---EENNKALSILGSNVIDTSVSMYYLGKDAEIS 76 Query: 68 EGELSVRF--NSLVSAETCSQVARELDLASFIRVS 100 +L+ R NS V +C+ L L +RVS Sbjct: 77 SKDLNRRIADNSKVDT-SCAVDGMRLGLHKVVRVS 110 >gi|321451187|gb|EFX62921.1| hypothetical protein DAPPUDRAFT_336204 [Daphnia pulex] Length = 158 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 E+ GY F + +L +AL + S S + +RLE +GD +LG+L+S LF Sbjct: 26 FEEIFGYKFKDEEMLHQALKRPTASLKSSVKKGDRLELVGDAVLGILVSIGLFRTITMYN 85 Query: 68 EGELSVRFNSLVSAETC 84 G+L+ R S ++ C Sbjct: 86 PGDLT-RHRSALTCNDC 101 >gi|19072786|gb|AAL84638.1|AF484524_1 endoribonuclease Dicer [Mus musculus x Mus spretus] Length = 1539 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +GY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1267 VGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYHDAHE 1324 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1325 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1356 >gi|196007068|ref|XP_002113400.1| hypothetical protein TRIADDRAFT_57522 [Trichoplax adhaerens] gi|190583804|gb|EDV23874.1| hypothetical protein TRIADDRAFT_57522 [Trichoplax adhaerens] Length = 213 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 34/155 (21%), Positives = 74/155 (47%), Gaps = 30/155 (19%) Query: 8 TLEKRIGYAFANRSLLEKALTHSS-----ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++KR+GY N +LL +ALT S I ++ + + +RL+++G + I L+ Sbjct: 24 NMQKRLGYHIKNINLLLQALTRQSAIRQGIHYASKSNNQRLQWVGSNMFHSGIVYKLYEK 83 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADV 118 + + NS +S + ++VA +++ S + + +++ K + C F S + + Sbjct: 84 YAN----------NSYISTDYLNKVA--INITSNMALVAEIGKRIGLASCVFRGSDEEII 131 Query: 119 VESLIAALYL---------DGGIEVAGTFVDKYWK 144 ++A +L DGG + ++++WK Sbjct: 132 TSEILAHTFLAILGSITLDDGGQKAVHDVIERHWK 166 >gi|168021275|ref|XP_001763167.1| dsRNA-specific nuclease dicer and related ribonuclease [Physcomitrella patens subsp. patens] gi|162685650|gb|EDQ72044.1| dsRNA-specific nuclease dicer and related ribonuclease [Physcomitrella patens subsp. patens] Length = 961 Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 ALT +S ++ SYER E L D L ++S LF F S EG+L+ +VS Sbjct: 512 ALTAASCQETF--SYERAELLSDAYLEWVVSHRLFLKFPSKHEGQLTRMRQKIVSNSVLY 569 Query: 86 QVARELDLASFIR 98 Q A E L S+I+ Sbjct: 570 QHALEKGLQSYIQ 582 >gi|218283083|ref|ZP_03489178.1| hypothetical protein EUBIFOR_01764 [Eubacterium biforme DSM 3989] gi|218216152|gb|EEC89690.1| hypothetical protein EUBIFOR_01764 [Eubacterium biforme DSM 3989] Length = 81 Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Query: 11 KRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLF 60 K GY + N + +A THSS + H + ERLEF+GD +L + +T LF Sbjct: 9 KANGYKYKNEDIYLEACTHSSYANEHHRQMDDNERLEFMGDSVLQIWSATQLF 61 >gi|294881176|ref|XP_002769282.1| hypothetical protein Pmar_PMAR007696 [Perkinsus marinus ATCC 50983] gi|239872560|gb|EER02000.1| hypothetical protein Pmar_PMAR007696 [Perkinsus marinus ATCC 50983] Length = 1394 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 31/139 (22%) Query: 14 GYAFANRS-LLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 GY F LL ++LTH+S+ S S S ERLE++GD +LG ++ LF K Sbjct: 1136 GYVFEKHPWLLTESLTHASVTSVSASYSNERLEWIGDAVLGAVVLQWLFKLEKPPKN--- 1192 Query: 72 SVRFNSLVSAETCS----QVARE----LDLASFIRVSSDLRKDVCSFMTSI--------- 114 +A TC+ +VA E DL F S+ L + V F+ + Sbjct: 1193 ---IVEAFTANTCNAHLAKVAVERLGVPDL--FNAFSAPLLRAVNRFVNELFSGRAVVRR 1247 Query: 115 ----QADVVESLIAALYLD 129 AD VE++I A++LD Sbjct: 1248 GPKPLADCVEAIIGAVWLD 1266 >gi|15221749|ref|NP_173854.1| NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / ribonuclease III [Arabidopsis thaliana] gi|9743333|gb|AAF97957.1|AC000103_7 F21J9.11 [Arabidopsis thaliana] gi|15010594|gb|AAK73956.1| At1g24450/F21J9_210 [Arabidopsis thaliana] gi|20334854|gb|AAM16183.1| At1g24450/F21J9_210 [Arabidopsis thaliana] gi|332192410|gb|AEE30531.1| nuclear fusion defective 2 protein /ribonuclease III [Arabidopsis thaliana] Length = 191 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 20/151 (13%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ +IGY F N +LL +A+TH+S S QE+ + L G I+ +S AK+ Sbjct: 51 LQTQIGYKFNNINLLRRAMTHASFS---QENNKALSIFGTHIIETAVSLQFL-----AKD 102 Query: 69 GELSVR-FNSLVS-----AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 ++S + L+S +C+ L L IRVS+ + D + ++I ++ Sbjct: 103 IDISSKALGRLISEVSNVESSCALDGDRLGLGKIIRVST--KTDASN--SAILCTGFRAI 158 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 A+ +D G + +WK ++G+ Sbjct: 159 FGAIAIDAG--TVDEAIKVFWKVHGARAGRL 187 >gi|58264874|ref|XP_569593.1| hypothetical protein CNC03670 [Cryptococcus neoformans var. neoformans JEC21] gi|57225825|gb|AAW42286.1| hypothetical protein CNC03670 [Cryptococcus neoformans var. neoformans JEC21] Length = 875 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 21/107 (19%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF----NSLVS 80 +ALT S + +YERLE LGD +L I+ ++ H A E S++ + LVS Sbjct: 454 QALTAPSSQNVTPWTYERLEILGDTLLKFFITIHVYLHGGGANSREDSLKVWQDRHKLVS 513 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 T + A +L L F + AD+VE++I A Y Sbjct: 514 NRTLTANAIKLGLVEF-----------------LLADIVEAIIGASY 543 >gi|134109497|ref|XP_776863.1| hypothetical protein CNBC3540 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259543|gb|EAL22216.1| hypothetical protein CNBC3540 [Cryptococcus neoformans var. neoformans B-3501A] Length = 875 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 21/107 (19%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF----NSLVS 80 +ALT S + +YERLE LGD +L I+ ++ H A E S++ + LVS Sbjct: 454 QALTAPSSQNVTPWTYERLEILGDTLLKFFITIHVYLHGGGANSREDSLKVWQDRHKLVS 513 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 T + A +L L F + AD+VE++I A Y Sbjct: 514 NRTLTANAIKLGLVEF-----------------LLADIVEAIIGASY 543 >gi|302412697|ref|XP_003004181.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] gi|261356757|gb|EEY19185.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] Length = 1240 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLF 60 LE+ I Y F + LL +++TH+S + + ERLEFLGD IL ++ + LF Sbjct: 937 LEELIDYTFTKKILLIESITHASFTAGHVNGCLERLEFLGDAILDDIVVSHLF 989 >gi|321456688|gb|EFX67789.1| hypothetical protein DAPPUDRAFT_261055 [Daphnia pulex] Length = 279 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 6/81 (7%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64 + +E +GY F ++ L+ LTH S + + E +RLE LGD +LG L+ + + Sbjct: 75 AVIETTLGYEFRHKENLKLPLTHISTNPNKVPSEDSDRLETLGDILLGTLVMAICYTTCP 134 Query: 65 SAKEGELSVRFNSLVSAETCS 85 + GEL+ +L S TC+ Sbjct: 135 TYGAGELT----NLTSMITCN 151 >gi|297851136|ref|XP_002893449.1| hypothetical protein ARALYDRAFT_472903 [Arabidopsis lyrata subsp. lyrata] gi|297339291|gb|EFH69708.1| hypothetical protein ARALYDRAFT_472903 [Arabidopsis lyrata subsp. lyrata] Length = 190 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 12/153 (7%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 A +TL+ +IGY F N +LL +A+TH+S S QE+ + L G I+ +S L F Sbjct: 44 ATDLATLQTQIGYKFNNTNLLRRAMTHASFS---QENNKALSIFGTNIIETSVS-LQFLA 99 Query: 63 FDSAKEGELSVRFNSLVSA--ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 D + R + VS +C+ L L IRVS + D + ++I Sbjct: 100 KDIDISSKALRRLIAQVSNVESSCALDGDRLGLGKIIRVSP--KTDASN--SAILCAGFR 155 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 ++ A+ +D G+ + +WK + G+ Sbjct: 156 AIFGAIAIDTGM--VDEAIKVFWKVHGDRPGRL 186 >gi|126659516|ref|ZP_01730648.1| ribonuclease III (rnc) [Cyanothece sp. CCY0110] gi|126619155|gb|EAZ89892.1| ribonuclease III (rnc) [Cyanothece sp. CCY0110] Length = 328 Score = 39.7 bits (91), Expect = 0.28, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 15/145 (10%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHF 63 S ++++I + F N LL +L+ S + ERLE LG+ +L L+I L++HF Sbjct: 6 SLVQEKISFNFKNPELLFLSLSDPSYGKQINQPGSDNERLESLGETVLDLIIIDYLYHHF 65 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLA---SFIRVSSD---LR-KDVCSFMTSIQA 116 +++ + L E + + L L F+ V+ + LR K F S++A Sbjct: 66 PYLTISKMTALRDKLSEKERLTNLWFGLGLGESYPFLDVNEERHRLRVKSSNPFEKSLKA 125 Query: 117 DVVESLIAALYLDGGIEVAGTFVDK 141 L+ A+++D G + +V+K Sbjct: 126 -----LVGAIHIDRGFSQSYNWVNK 145 >gi|296089027|emb|CBI38730.3| unnamed protein product [Vitis vinifera] Length = 1474 Score = 39.7 bits (91), Expect = 0.28, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 3/90 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ I Y +LE ALT +S ++ YER E LGD L ++S LF + E Sbjct: 1358 LKDVINYPVPAAKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKHE 1414 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR 98 G+L+ +VS Q A L S+I+ Sbjct: 1415 GQLTRMRQQMVSNMVLYQSALCKGLQSYIQ 1444 >gi|154149851|ref|YP_001403469.1| ribonuclease III [Candidatus Methanoregula boonei 6A8] gi|153998403|gb|ABS54826.1| ribonuclease III [Methanoregula boonei 6A8] Length = 154 Score = 39.7 bits (91), Expect = 0.28, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 6/128 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNH 62 S LE R+G+ +R++L+ ALT + + + + + L +GD +LG +++T L+ Sbjct: 6 SELETRLGFTIKDRTILDAALTRQAYINENPTAGNDCMDPLATVGDAVLGAVVATRLYES 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV-ES 121 K G L+ V+ + A + L FIR K+ S D E+ Sbjct: 66 GIRDK-GTLTSEKIRGVNRDKTRAFAEKFQLHKFIRWGKGEEKNKVWEQGSQAFDAAFEA 124 Query: 122 LIAALYLD 129 LI A++LD Sbjct: 125 LIGAVFLD 132 >gi|313212467|emb|CBY36441.1| unnamed protein product [Oikopleura dioica] Length = 2196 Score = 39.7 bits (91), Expect = 0.31, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 1/108 (0%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ + Y F L AL + ++++ERLEFLGD +L L+ L+N +A + Sbjct: 1894 LQNELEYTFKTPHLCRLALAKKKYTKDPKDNFERLEFLGDAVLDYLVVDELYNRRSAALD 1953 Query: 69 -GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 G+L+ S+ S +A + L + + KD S M ++ Sbjct: 1954 SGQLTDLKQSITSNNLFGSLAFCMGLPQSTLMKASAAKDHISCMYKLE 2001 >gi|149751348|ref|XP_001497601.1| PREDICTED: adenosine deaminase, RNA-specific [Equus caballus] Length = 1145 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ T L E H K G + E+++ R GP HDP+F V + SK+ A+Q+ Sbjct: 558 KNPVTTLLECVH-KLGSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKVAKQM 616 Query: 215 AAAEVLK 221 AA E +K Sbjct: 617 AAEEAMK 623 >gi|147856819|emb|CAN79168.1| hypothetical protein VITISV_028064 [Vitis vinifera] Length = 292 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 R KT LQE H K PEY T + GP H+P F V + GL+ Sbjct: 8 REMNKTRLQELCHRKRWNPPEYS-TRKDGPPHNPTFXATVSVGGLS 52 >gi|310794561|gb|EFQ30022.1| RNase3 domain-containing protein [Glomerella graminicola M1.001] Length = 334 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 11/138 (7%) Query: 17 FANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 +N L A TH ++ + + SY+RLE+LGD L L+ S+L+F F G+ S Sbjct: 62 ISNPVLEMAAFTHVGMAKTKTDLSYDRLEWLGDAYLELISSSLIFQTFGGLPTGKCSQLR 121 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVC-------SFMTSIQADVVESLIAALYL 128 L+ + + L ++ S+ R + + + D+ E+ +AA+ L Sbjct: 122 ELLIRNSNLGEYSAHYKLFERAKLPSEYRPNGTLPAMAKPHEIQKVHGDLFEAYVAAIAL 181 Query: 129 D---GGIEVAGTFVDKYW 143 G+ A ++ W Sbjct: 182 SDPVSGLSRAAEWLKTLW 199 >gi|169610828|ref|XP_001798832.1| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15] gi|160702165|gb|EAT83689.2| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15] Length = 1443 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 11/146 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 +E + Y F LL A H S ++ SY+RLEFLGD +L + LF + Sbjct: 1165 IEMKHPYRFRYPRLLRSAFIHPSQPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYKYPDK 1224 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ------ADVVE 120 L+ +VS + V D + + + S+ ADV+E Sbjct: 1225 DPQWLTEHKTPMVSNKFLGAVQIR-DYVYEVEEAEREANGAVDYWVSVSEPPKCLADVIE 1283 Query: 121 SLIAALYLDGGIE--VAGTFVDKYWK 144 + +AA+++D + V F D + K Sbjct: 1284 AFVAAIFVDSEFDFNVVQKFFDLHLK 1309 >gi|313224452|emb|CBY20242.1| unnamed protein product [Oikopleura dioica] Length = 2082 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 1/108 (0%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ + Y F L AL + ++++ERLEFLGD +L L+ L+N +A + Sbjct: 1882 LQNELEYTFKTPHLCRLALAKKKYTKDPKDNFERLEFLGDAVLDYLVVDELYNRRSAALD 1941 Query: 69 -GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 G+L+ S+ S +A + L + + KD S M ++ Sbjct: 1942 SGQLTDLKQSITSNNLFGSLAFCMGLPQSTLMKASAAKDHISCMYKLE 1989 >gi|169612533|ref|XP_001799684.1| hypothetical protein SNOG_09389 [Phaeosphaeria nodorum SN15] gi|111062461|gb|EAT83581.1| hypothetical protein SNOG_09389 [Phaeosphaeria nodorum SN15] Length = 474 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 13/139 (9%) Query: 22 LLEKALTHSSIS------HSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 L E TH SI H + + YERLE+LGD + L+ S L+N F +L Sbjct: 162 LQEAVFTHRSIHANNVNVHQHVDFGLDYERLEYLGDAYIELIASRALYNRFPHVDVPQLC 221 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---D 129 LV ++ + ++ + K+ ++ + AD+ E+ +A + L + Sbjct: 222 SWRERLVENVALAKFSEAYGFPDQLKRKVEFDKNSKAWRKVV-ADIFEAYVAGVVLSDPE 280 Query: 130 GGIEVAGTFVDKYWKQRAL 148 G A ++D+ W + L Sbjct: 281 NGFATAEKWLDELWASQLL 299 >gi|301774246|ref|XP_002922574.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific adenosine deaminase-like [Ailuropoda melanoleuca] Length = 1144 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ T L E H K G + E+++ R GP HDP+F V + SK+ A+Q+ Sbjct: 560 KNPVTTLLECVH-KLGSSCEFRLLSREGPAHDPKFQYCVAMGAHTFPTASAPSKKVAKQM 618 Query: 215 AAAEVLK 221 AA E +K Sbjct: 619 AAEEAVK 625 >gi|302808147|ref|XP_002985768.1| hypothetical protein SELMODRAFT_122841 [Selaginella moellendorffii] gi|300146677|gb|EFJ13346.1| hypothetical protein SELMODRAFT_122841 [Selaginella moellendorffii] Length = 219 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 8/73 (10%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++++GY F N+ +L AL+ H ++ RLEFLGD +L L++ L F Sbjct: 77 LQEKLGYQFRNKQVLRVALSF----HDDNFTFRRLEFLGDAVLDYLVTRHLVRSFPDQSA 132 Query: 69 GELSVRFNSLVSA 81 G R N++ A Sbjct: 133 G----RHNTIKQA 141 >gi|154301554|ref|XP_001551189.1| hypothetical protein BC1G_10104 [Botryotinia fuckeliana B05.10] gi|150855766|gb|EDN30958.1| hypothetical protein BC1G_10104 [Botryotinia fuckeliana B05.10] Length = 1842 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 7/120 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 +E + Y F + LL A H + Y++ Y+RLEFLGD +L + LF++ + Sbjct: 1539 VEMKHPYHFKHPRLLRSAFIHPAYLFIYEQIPCYQRLEFLGDSLLDMACVNFLFHNHPTK 1598 Query: 67 KEGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 L+ ++VS + + +L + + S ++K + + +D+ E+LI A Sbjct: 1599 DPQWLTEHKMAIVSNQFLGALCVKLGFHKHLLTLDSQVQKMIADY----SSDINEALIQA 1654 >gi|254411973|ref|ZP_05025748.1| RNase3 domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180939|gb|EDX75928.1| RNase3 domain protein [Microcoleus chthonoplastes PCC 7420] Length = 317 Score = 39.3 bits (90), Expect = 0.37, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 7/140 (5%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHFD 64 +LE +IG F + L AL H S + ES ERL+FLGD I+ L+I+ L+++ Sbjct: 7 SLENQIGIQFKHSDTLRLALMHRSYAEQIGESEQNNERLKFLGDAIVNLVITDYLYHNCP 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLA---SFIRVSSDLRKDVCSFMTSIQADVVES 121 + + LV + +++ +L L F+ ++ + + + ++ + Sbjct: 67 YLEVSNFKGLRDKLVEGQRLTKLWYQLGLGEGYPFLGLTQERHRLRLQNHNPFEEALI-A 125 Query: 122 LIAALYLDGGIEVAGTFVDK 141 L+ A++ D G A ++ K Sbjct: 126 LVGAIHQDRGFSQARNWLVK 145 >gi|151940843|gb|EDN59225.1| YmL15 [Saccharomyces cerevisiae YJM789] Length = 234 Score = 39.3 bits (90), Expect = 0.37, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 14/141 (9%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH---FDSAKE 68 + G +N +L+ LTH S +H + E+L LG + L L + +S + Sbjct: 58 KYGINLSNELILQ-CLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCEN 116 Query: 69 GELSVRFNS--------LVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADV 118 G+LS++F++ L S T + +L FI ++ ++ + T+I A V Sbjct: 117 GQLSLQFSNLGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDPIKDGHINGETTIFASV 176 Query: 119 VESLIAALYLDGGIEVAGTFV 139 + + I A+ G E A F+ Sbjct: 177 LNAFIGAILSTNGSEKAAKFI 197 >gi|291397874|ref|XP_002715382.1| PREDICTED: adenosine deaminase, RNA-specific [Oryctolagus cuniculus] Length = 1150 Score = 39.3 bits (90), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+AA E Sbjct: 564 TTLLECVH-KLGSSCEFRLLSKEGPAHDPKFQYCVAVGSQTFPTASAPSKKVAKQMAAEE 622 Query: 219 VLK 221 +K Sbjct: 623 AMK 625 >gi|157377514|ref|YP_001476114.1| hypothetical protein Ssed_4384 [Shewanella sediminis HAW-EB3] gi|157319888|gb|ABV38986.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3] Length = 300 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 22/134 (16%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL T ++ H + + EF+G+RIL +ST +S +FN L Sbjct: 111 LLPLPYTEEAVKHLSRRIIQVQEFMGERILLENVSTY------------VSCQFNELTEG 158 Query: 82 ETCSQVARE------LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG---I 132 E + VA+E LD+ + + +L +D+ +FM +I + V+ + A + D G + Sbjct: 159 EFLAAVAKEADCYLLLDINNAYVTAKNLNQDMQAFMEAIPVERVKQIHLAGFHDKGDFLL 218 Query: 133 EVAGTFVDK-YWKQ 145 + VDK W++ Sbjct: 219 DAHNHPVDKDVWQE 232 >gi|190405368|gb|EDV08635.1| 60S ribosomal protein L15, mitochondrial precursor [Saccharomyces cerevisiae RM11-1a] Length = 234 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 14/141 (9%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH---FDSAKE 68 + G +N +L+ LTH S +H + E+L LG + L L + +S + Sbjct: 58 KYGINLSNELILQ-CLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCEN 116 Query: 69 GELSVRFNS--------LVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADV 118 G+LS++F++ L S T + +L FI ++ ++ + T+I A V Sbjct: 117 GQLSLQFSNLGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDSIKDGHINGETTIFASV 176 Query: 119 VESLIAALYLDGGIEVAGTFV 139 + + I A+ G E A F+ Sbjct: 177 LNAFIGAILSTNGSEKAAKFI 197 >gi|225439221|ref|XP_002270719.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 581 Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 KT LQE H K PEY T + GP H+P F V + GL+ Sbjct: 3 KTRLQELCHRKRWNPPEYS-TRKDGPPHNPTFIATVSVGGLS 43 >gi|255543655|ref|XP_002512890.1| double-stranded RNA binding protein, putative [Ricinus communis] gi|223547901|gb|EEF49393.1| double-stranded RNA binding protein, putative [Ricinus communis] Length = 477 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 12/72 (16%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA----PAQGMDCSKRAAEQ 213 K LQE AH + G+ T RSGP H P FT VE++G+ PA+ +K+ AE+ Sbjct: 92 KNLLQETAH-RAGLNLPVYTTIRSGPGHVPTFTCTVELAGMNFTGEPAK----TKKQAEK 146 Query: 214 ---VAAAEVLKR 222 +AA LKR Sbjct: 147 NAAIAAWSALKR 158 >gi|218186287|gb|EEC68714.1| hypothetical protein OsI_37196 [Oryza sativa Indica Group] Length = 2010 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215 K+ LQE+A TPEY TF+ GP H+P F TVV+ + G +++AAEQ A Sbjct: 1270 KSRLQEYAQKTGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQSA 1327 Query: 216 A 216 A Sbjct: 1328 A 1328 >gi|323332393|gb|EGA73802.1| Mrpl15p [Saccharomyces cerevisiae AWRI796] gi|323353848|gb|EGA85703.1| Mrpl15p [Saccharomyces cerevisiae VL3] Length = 248 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 14/141 (9%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH---FDSAKE 68 + G +N +L+ LTH S +H + E+L LG + L L + +S + Sbjct: 72 KYGINLSNELILQ-CLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCEN 130 Query: 69 GELSVRFNS--------LVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADV 118 G+LS++F++ L S T + +L FI ++ ++ + T+I A V Sbjct: 131 GQLSLQFSNLGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDPIKDGHINGETTIFASV 190 Query: 119 VESLIAALYLDGGIEVAGTFV 139 + + I A+ G E A F+ Sbjct: 191 LNAFIGAILSTNGSEKAAKFI 211 >gi|207342841|gb|EDZ70480.1| YLR312W-Ap-like protein [Saccharomyces cerevisiae AWRI1631] gi|256270407|gb|EEU05604.1| Mrpl15p [Saccharomyces cerevisiae JAY291] gi|259148294|emb|CAY81541.1| Mrpl15p [Saccharomyces cerevisiae EC1118] gi|323336359|gb|EGA77627.1| Mrpl15p [Saccharomyces cerevisiae Vin13] gi|323347380|gb|EGA81652.1| Mrpl15p [Saccharomyces cerevisiae Lalvin QA23] Length = 253 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 14/141 (9%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH---FDSAKE 68 + G +N +L+ LTH S +H + E+L LG + L L + +S + Sbjct: 77 KYGINLSNELILQ-CLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCEN 135 Query: 69 GELSVRFNS--------LVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADV 118 G+LS++F++ L S T + +L FI ++ ++ + T+I A V Sbjct: 136 GQLSLQFSNLGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDPIKDGHINGETTIFASV 195 Query: 119 VESLIAALYLDGGIEVAGTFV 139 + + I A+ G E A F+ Sbjct: 196 LNAFIGAILSTNGSEKAAKFI 216 >gi|134079420|emb|CAK40801.1| unnamed protein product [Aspergillus niger] Length = 1379 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62 +E+ +GY F ++SL +++TH S + Q SY RL FLG +L ++ + L H Sbjct: 1095 MEELLGYTFTDKSLAVESMTHPSCTGLVQTTSYRRLSFLGASVLEWIVVSYLHRH 1149 >gi|13236212|gb|AAK16101.1|AF291875_1 RNA adenosine deaminase 1 [Mus musculus] Length = 634 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+AA E Sbjct: 52 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 110 Query: 219 VLK 221 +K Sbjct: 111 AMK 113 >gi|302685924|ref|XP_003032642.1| hypothetical protein SCHCODRAFT_53921 [Schizophyllum commune H4-8] gi|300106336|gb|EFI97739.1| hypothetical protein SCHCODRAFT_53921 [Schizophyllum commune H4-8] Length = 368 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 16/166 (9%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNHF 63 +G L+++A TH+S +E + +LE +G+ ++GL S L + Sbjct: 68 LGNVLTTPELVQQACTHASFVALQKEVNPNAPAPATNAQLEQVGNALMGLFASEYLAAKY 127 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIR----VSSDLRKDVCSFMTSIQADVV 119 L + V TC+ VA+E+ +R +S + T A + Sbjct: 128 PYLPTKVLKAAVTAHVGPLTCANVAQEMGATQLLRWNRTISRNPSHPQVMLHTDALASIP 187 Query: 120 ESLIAALYLDGGIEVAGTFVDKYW--KQRALKSG-KFRRDAKTELQ 162 +L A +Y + A FV ++ +Q L+S KFR LQ Sbjct: 188 RALTALIYQKRSLPAARQFVHSFFLSRQVDLRSMLKFRNPKWALLQ 233 >gi|158706450|sp|A2QX45|DCL22_ASPNC RecName: Full=Dicer-like protein 2-2; Includes: RecName: Full=Endoribonuclease dcl2-2; Includes: RecName: Full=ATP-dependent helicase dcl2-2 Length = 1362 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62 +E+ +GY F ++SL +++TH S + Q SY RL FLG +L ++ + L H Sbjct: 1078 MEELLGYTFTDKSLAVESMTHPSCTGLVQTTSYRRLSFLGASVLEWIVVSYLHRH 1132 >gi|73961632|ref|XP_547564.2| PREDICTED: similar to adenosine deaminase, RNA-specific isoform b [Canis familiaris] Length = 1119 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ T L E H K G + E+++ R GP HDP+F V + SK+ A+Q+ Sbjct: 532 KNPVTTLLECVH-KLGSSCEFRLLSREGPAHDPKFQYCVAMGAHTFPTVSAPSKKVAKQM 590 Query: 215 AAAEVLK 221 AA E +K Sbjct: 591 AAEEAMK 597 >gi|116785242|gb|ABK23649.1| unknown [Picea sitchensis] Length = 188 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ +I Y F ++SLL K +TH+S S ++ L LG I+ IS + + + Sbjct: 43 LQTKIKYQFKDKSLLAKTMTHASFS---LDNNAVLNILGSEIIEAAISFHYLSKNSTISK 99 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G+L+ + + + S+ A +L L IRV+ Sbjct: 100 GDLTSQKAKISNCSALSKDAFDLQLNELIRVA 131 >gi|13236216|gb|AAK16103.1|AF291877_1 RNA adenosine deaminase 1 [Mus musculus] Length = 660 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+AA E Sbjct: 52 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 110 Query: 219 VLK 221 +K Sbjct: 111 AMK 113 >gi|317033008|ref|XP_001394728.2| hypothetical protein ANI_1_2258094 [Aspergillus niger CBS 513.88] Length = 889 Score = 38.9 bits (89), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62 +E+ +GY F ++SL +++TH S + Q SY RL FLG +L ++ + L H Sbjct: 605 MEELLGYTFTDKSLAVESMTHPSCTGLVQTTSYRRLSFLGASVLEWIVVSYLHRH 659 >gi|296085908|emb|CBI31232.3| unnamed protein product [Vitis vinifera] Length = 494 Score = 38.9 bits (89), Expect = 0.48, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 KT LQE H K PEY T + GP H+P F V + GL+ Sbjct: 3 KTRLQELCHRKRWNPPEYS-TRKDGPPHNPTFIATVSVGGLS 43 >gi|72157362|ref|XP_797998.1| PREDICTED: similar to MGC53736 protein [Strongylocentrotus purpuratus] gi|115963208|ref|XP_001187016.1| PREDICTED: similar to MGC53736 protein [Strongylocentrotus purpuratus] Length = 306 Score = 38.9 bits (89), Expect = 0.50, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE AK GVTP Y + G H P+FT+ +G G SK+ A+Q AA +VL Sbjct: 11 LQELC-AKKGVTPVYDTIGQEGASHQPKFTIRC-TAGDVVGNGQGPSKKVAKQSAAEDVL 68 Query: 221 KR 222 ++ Sbjct: 69 QQ 70 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 ELQE PEY+ SGP H+ RF + V + QG+D SKR A++ AA+ + Sbjct: 95 ELQELVTCMGWRKPEYEALEESGPPHNRRFVISVSVDKYK-EQGVDQSKRLAKRAAASAM 153 Query: 220 LK 221 L+ Sbjct: 154 LE 155 >gi|74192520|dbj|BAE43048.1| unnamed protein product [Mus musculus] Length = 705 Score = 38.9 bits (89), Expect = 0.51, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+AA E Sbjct: 123 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 181 Query: 219 VLK 221 +K Sbjct: 182 AMK 184 >gi|149048040|gb|EDM00616.1| adenosine deaminase, RNA-specific, isoform CRA_a [Rattus norvegicus] Length = 634 Score = 38.9 bits (89), Expect = 0.52, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+AA E Sbjct: 52 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 110 Query: 219 VLK 221 +K Sbjct: 111 AMK 113 >gi|218186280|gb|EEC68707.1| hypothetical protein OsI_37189 [Oryza sativa Indica Group] Length = 474 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215 K+ LQE+A TPEY TF+ GP H+P F TVV+ + G +++AAEQ A Sbjct: 35 KSRLQEYAQKAGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGFF-NRKAAEQSA 92 Query: 216 A 216 A Sbjct: 93 A 93 >gi|148683241|gb|EDL15188.1| adenosine deaminase, RNA-specific, isoform CRA_d [Mus musculus] Length = 674 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+AA E Sbjct: 92 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 150 Query: 219 VLK 221 +K Sbjct: 151 AMK 153 >gi|321253833|ref|XP_003192867.1| hypothetical protein CGB_C5530W [Cryptococcus gattii WM276] gi|317459336|gb|ADV21080.1| hypothetical protein CNC03670 [Cryptococcus gattii WM276] Length = 916 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 9/88 (10%) Query: 20 RSLLE-----KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 RSLL +ALT S + +YERLE LGD +L I+ ++ H A E S++ Sbjct: 440 RSLLHPELALQALTAPSSVNVTPWTYERLEILGDTLLKFFITIHVYLHGGGANSREDSLK 499 Query: 75 F----NSLVSAETCSQVARELDLASFIR 98 + LVS T + A +L L ++R Sbjct: 500 VWQDRHKLVSNRTLTANAIKLGLVDYVR 527 >gi|322518582|sp|B7E321|DRB5_ORYSJ RecName: Full=Double-stranded RNA-binding protein 5; AltName: Full=dsRNA-binding protein 2; Short=OsDRB2; AltName: Full=dsRNA-binding protein 5 gi|215765071|dbj|BAG86768.1| unnamed protein product [Oryza sativa Japonica Group] Length = 404 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y T RSGP H P F+ VE++G++ A +K+ AE+ AA Sbjct: 89 KNLLQETAHRAGLKLPVY-TTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAA 146 Score = 38.1 bits (87), Expect = 0.84, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVAA 216 K +LQE A P Y T R GPDH PRF V +G +C+ R AE AA Sbjct: 3 KNQLQELAQRSCFSLPSYVCT-REGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAA 61 Query: 217 AEVLKR 222 L R Sbjct: 62 EVALAR 67 >gi|156032684|ref|XP_001585179.1| hypothetical protein SS1G_13747 [Sclerotinia sclerotiorum 1980] gi|154699150|gb|EDN98888.1| hypothetical protein SS1G_13747 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1867 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLL 54 +E + Y F LL A TH + SY++ SY+RLEFLGD +L ++ Sbjct: 1573 VETKHPYHFKYPRLLRSASTHPAYPFSYEQIPSYQRLEFLGDALLDMV 1620 >gi|148683240|gb|EDL15187.1| adenosine deaminase, RNA-specific, isoform CRA_c [Mus musculus] Length = 700 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+AA E Sbjct: 92 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 150 Query: 219 VLK 221 +K Sbjct: 151 AMK 153 >gi|238492895|ref|XP_002377684.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] gi|220696178|gb|EED52520.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] Length = 790 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 9/78 (11%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNH--FDS 65 LE +GY F+++SL +++TH S Y SY RL FLG I+ L++ L F S Sbjct: 552 LEALLGYTFSDKSLAIESMTHPSCVGLYGTASYRRLSFLGAGIIELVVVRYLHRQKSFTS 611 Query: 66 AKEGELSVRFNSLVSAET 83 +K R SL SA T Sbjct: 612 SK------RLQSLKSAVT 623 >gi|224055781|ref|XP_002298650.1| predicted protein [Populus trichocarpa] gi|222845908|gb|EEE83455.1| predicted protein [Populus trichocarpa] Length = 357 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 12/72 (16%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA----PAQGMDCSKRAAEQ 213 K LQE AH + G+ T RSGP H P FT VE++G+ PA+ +K+ AE+ Sbjct: 89 KNLLQETAH-RAGLNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGEPAK----TKKQAEK 143 Query: 214 ---VAAAEVLKR 222 +AA LKR Sbjct: 144 NAAIAAWSALKR 155 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K +LQE A P Y R GPDH PRF V +G C+ + AAA Sbjct: 3 KNQLQELAQRSCFNLPSY-ACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61 Query: 218 EV 219 EV Sbjct: 62 EV 63 >gi|317156821|ref|XP_001826035.2| hypothetical protein AOR_1_660054 [Aspergillus oryzae RIB40] Length = 939 Score = 38.5 bits (88), Expect = 0.64, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 9/78 (11%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNH--FDS 65 LE +GY F+++SL +++TH S Y SY RL FLG I+ L++ L F S Sbjct: 701 LEALLGYTFSDKSLAIESMTHPSCVGLYGTASYRRLSFLGAGIIELVVVRYLHRQKSFTS 760 Query: 66 AKEGELSVRFNSLVSAET 83 +K R SL SA T Sbjct: 761 SK------RLQSLKSAVT 772 >gi|83774779|dbj|BAE64902.1| unnamed protein product [Aspergillus oryzae] Length = 1256 Score = 38.5 bits (88), Expect = 0.66, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 9/78 (11%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNH--FDS 65 LE +GY F+++SL +++TH S Y SY RL FLG I+ L++ L F S Sbjct: 1018 LEALLGYTFSDKSLAIESMTHPSCVGLYGTASYRRLSFLGAGIIELVVVRYLHRQKSFTS 1077 Query: 66 AKEGELSVRFNSLVSAET 83 +K R SL SA T Sbjct: 1078 SK------RLQSLKSAVT 1089 >gi|289620343|emb|CBI53201.1| unnamed protein product [Sordaria macrospora] Length = 345 Score = 38.5 bits (88), Expect = 0.71, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 29/182 (15%) Query: 22 LLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 +L+ AL ++++H + SYERLE++GD L L+ S+ ++ F + G+ + R Sbjct: 66 ILDPALKKAALTHPGKANNDPVASYERLEWIGDAYLELIASSFIYQTFPTLPAGKSAQRR 125 Query: 76 NSLVSAETCSQ--VARELDLASFIRVSSDLRKDVCSFMTS------IQADVVESLIAALY 127 L+ T + V LD + I ++ V S I D+ E+ + + Sbjct: 126 EMLIRNTTLGEFSVYYGLDNMADIPEEFNMEGRVGGTNASQKVRVKILGDLFEAYVGGVI 185 Query: 128 LD---GGIEVAGTFVDKYW----------KQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 L GI+ ++ W +++ KSG+ D KT L+ A+ GV E Sbjct: 186 LSDPANGIQRVSDWLKALWGPLMAEYIREEEKKSKSGQ-AHDPKTILEAAIGAR-GVKIE 243 Query: 175 YK 176 YK Sbjct: 244 YK 245 >gi|289807913|ref|ZP_06538542.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 61 Score = 38.5 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 3/45 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEF 45 M+ + + L++++GY F ++ LL++ALTH S S + ERLEF Sbjct: 20 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHN---ERLEF 61 >gi|327274458|ref|XP_003221994.1| PREDICTED: double-stranded RNA-specific editase B2-like [Anolis carolinensis] Length = 714 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 16/92 (17%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189 ++R L+ G K +L W + VTP +YK+ ++GP H P F Sbjct: 71 RKRPLEEGNSGHFCKLQLI-WKKVSWSVTPKNALVQLHELKPGLQYKMVSQTGPVHAPVF 129 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V VE++GL +G +K+ A+ AA LK Sbjct: 130 AVAVEVNGLT-FEGTGPTKKKAKMRAAELALK 160 >gi|326921558|ref|XP_003207024.1| PREDICTED: double-stranded RNA-specific editase B2-like [Meleagris gallopavo] Length = 720 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 16/92 (17%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189 ++R L+ G K +L W + VTP +YK+ ++GP H P F Sbjct: 73 RKRPLEDGNNGHFCKLQLI-WKKVSWSVTPKNALVQLHELKPGLQYKMVSQTGPVHAPVF 131 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V VE++GL +G +K+ A+ AA LK Sbjct: 132 AVAVEVNGLT-FEGTGPTKKKAKMRAAELALK 162 >gi|308162643|gb|EFO65028.1| Dicer [Giardia lamblia P15] Length = 754 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 5/93 (5%) Query: 35 SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94 S+ ++RLE LGD +LG +++ L F +A G L LV ET + + + L L Sbjct: 327 SHTNVFQRLELLGDAVLGFVVTARLLCLFPNASVGTLVDLKMELVRNETLNYLVQMLRLP 386 Query: 95 SFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 S L + AD+ E L+ +++ Sbjct: 387 QLAEFSGTLMAK-----SKTWADMYEELVGSVF 414 >gi|50286821|ref|XP_445840.1| hypothetical protein [Candida glabrata CBS 138] gi|49525146|emb|CAG58759.1| unnamed protein product [Candida glabrata] Length = 226 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 17/145 (11%) Query: 6 YSTLEKRIGYA-----FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGL---LIST 57 ++++ +R+G+ ++ ++L+ LTH S +H + E+L LG + L L + S Sbjct: 57 HASVRERMGFQEHGIELSDAAILQ-CLTHKSFAHGSRPYNEKLNLLGSQYLKLQAAMHSV 115 Query: 58 LLFNHFDSAKEGELSVRFN-SLVSAETCSQ--VARELDLASFIRVSSDLRKDVCSFMTSI 114 N F G L + LVS +T ++ +A+ L+ F +VS L + + Sbjct: 116 GPENSF-----GNLGTPVSKGLVSYQTAAEYVIAKNLEPLVFWKVSDPLNDGPIKGKSKV 170 Query: 115 QADVVESLIAALYLDGGIEVAGTFV 139 + V+ S I A+ L G + A F+ Sbjct: 171 MSTVLNSFIGAILLQQGEKKASQFI 195 >gi|221361577|emb|CAX18337.1| dicel-like 2 [Nicotiana benthamiana] Length = 224 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 28/127 (22%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 E LE LGD L S LF +++ EG L+V+ NS++S ++ + FIR Sbjct: 22 ESLETLGDSFLKYAASIQLFKTYENHHEGLLTVKKNSIISNAALCKLGCARKIPGFIRNE 81 Query: 101 S-DLR--------KDVCSF-----MTSIQ--------------ADVVESLIAALYLDGGI 132 DL+ V +F M S++ ADVVE+LI A GG Sbjct: 82 PFDLKGWLIPGDNSQVYNFDEEVLMPSVKMYSRGRQKTKSKRVADVVEALIGAFLSSGGE 141 Query: 133 EVAGTFV 139 A +F+ Sbjct: 142 VAALSFM 148 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRIL 51 +RY LE + Y F + SLL +ALTH S + Y+RLEFLGD +L Sbjct: 176 VRY--LESLLHYKFHDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDVVL 222 >gi|299756084|ref|XP_001829079.2| hypothetical protein CC1G_01759 [Coprinopsis cinerea okayama7#130] gi|298411515|gb|EAU92714.2| hypothetical protein CC1G_01759 [Coprinopsis cinerea okayama7#130] Length = 352 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 10/132 (7%) Query: 16 AFANRSLLEKALTHSSI------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 +N L+ + THSS+ S Q ERL +LG +L +++ LLF+ + G Sbjct: 45 PISNTDLVLQIFTHSSLRTRLTCSSLDQYDNERLSWLGKHVLDSVVTELLFDTRPMLRAG 104 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA--DVVESLIAALY 127 E+ R L+ + + L +R LR+ S +T Q D+ + A +Y Sbjct: 105 EIVERKEELLCDDLFEEWVTHYGLLRKLRYDPVLRE--SSGITKPQETRDIFYAYTAGVY 162 Query: 128 LDGGIEVAGTFV 139 LD G V ++ Sbjct: 163 LDSGAPVVREWI 174 >gi|321468486|gb|EFX79471.1| hypothetical protein DAPPUDRAFT_244860 [Daphnia pulex] Length = 118 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L EW + PEY+V +SGP H + + ++S +G+ SK+AA+ AA ++L Sbjct: 52 LSEWRLTRHSTLPEYRVVRKSGPSHSKTYFMTCKLSERV-TEGVGKSKKAAKNDAAQKML 110 Query: 221 K 221 + Sbjct: 111 Q 111 >gi|224044691|ref|XP_002193461.1| PREDICTED: similar to adenosine deaminase, RNA-specific, B2 [Taeniopygia guttata] Length = 744 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 16/92 (17%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189 ++R L+ G K +L W + VTP +YK+ ++GP H P F Sbjct: 98 RKRPLEEGNNGHFCKLQLI-WKKVSWSVTPKNALVQLHELKPGLQYKMVSQTGPVHAPVF 156 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V VE++GL +G +K+ A+ AA LK Sbjct: 157 AVAVEVNGLT-FEGTGPTKKKAKMRAAELALK 187 >gi|226507212|ref|NP_001141877.1| hypothetical protein LOC100274020 [Zea mays] gi|194706274|gb|ACF87221.1| unknown [Zea mays] Length = 392 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y T RSGP H P F+ VE++GL+ A +K+ AE+ AA Sbjct: 89 KNLLQETAHRAGLKLPAY-TTVRSGPGHSPVFSSTVELAGLSFAGDPARTKKQAEKNAA 146 Score = 35.0 bits (79), Expect = 7.3, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVAA 216 K +LQE A P Y V R GPDH PRF V +G C+ R AE AA Sbjct: 3 KNQLQELAQRSCFSLPSY-VCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAAA 61 Query: 217 AEVLKR 222 L R Sbjct: 62 EVALAR 67 >gi|222616496|gb|EEE52628.1| hypothetical protein OsJ_34969 [Oryza sativa Japonica Group] Length = 781 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215 K+ LQE+A TPEY TF+ GP H+P F TVV+ + G +++AAEQ A Sbjct: 35 KSRLQEYAQKTGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQSA 92 Query: 216 A 216 A Sbjct: 93 A 93 >gi|255633098|gb|ACU16904.1| unknown [Glycine max] Length = 188 Score = 38.1 bits (87), Expect = 0.83, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 4/94 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 TL+K++GY F + LL +A+TH+S S +E+ + LG ++ +S L + Sbjct: 47 TLQKQLGYTFKSIDLLRRAVTHASFS---EENNKAFAILGASVIETSVSFHLLSRDVDLS 103 Query: 68 EGELSVRFNSLVSAE-TCSQVARELDLASFIRVS 100 EL+ R + + + + +C+ L L +RVS Sbjct: 104 SKELNRRLSQITNVDSSCAVDGTRLGLHKVVRVS 137 >gi|85083779|ref|XP_957185.1| hypothetical protein NCU01762 [Neurospora crassa OR74A] gi|7800875|emb|CAB91233.1| related to Ribonuclease III [Neurospora crassa] gi|28918272|gb|EAA27949.1| predicted protein [Neurospora crassa OR74A] Length = 352 Score = 38.1 bits (87), Expect = 0.83, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 17/139 (12%) Query: 22 LLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 +L+ AL ++++H + SYERLE++GD L L+ S+ ++ F + G+ + R Sbjct: 65 ILDPALKKAALTHPGKANNDPVASYERLEWIGDAYLELIASSFIYQTFPTLPAGKSAQRR 124 Query: 76 NSLVSAETCSQ--VARELDLASFIRVSSDLRKDVCSFMTS------IQADVVESLIAALY 127 L+ T + V LD + I ++ V S I D+ E+ + + Sbjct: 125 EMLIRNTTLGEFSVYYGLDKMADIPEEFNMEGRVGGTNASQKVRIKILGDLFEAYVGGVI 184 Query: 128 LD---GGIEVAGTFVDKYW 143 L GI+ A ++ W Sbjct: 185 LSDPANGIQRASDWLKALW 203 >gi|226371684|ref|NP_001033676.2| double-stranded RNA-specific adenosine deaminase isoform 2 [Mus musculus] Length = 930 Score = 38.1 bits (87), Expect = 0.85, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+AA E Sbjct: 322 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 380 Query: 219 VLK 221 +K Sbjct: 381 AMK 383 >gi|88192985|pdb|2FFL|A Chain A, Crystal Structure Of Dicer From Giardia Intestinalis gi|88192986|pdb|2FFL|B Chain B, Crystal Structure Of Dicer From Giardia Intestinalis gi|88192987|pdb|2FFL|C Chain C, Crystal Structure Of Dicer From Giardia Intestinalis gi|88192988|pdb|2FFL|D Chain D, Crystal Structure Of Dicer From Giardia Intestinalis gi|158430470|pdb|2QVW|A Chain A, Structure Of Giardia Dicer Refined Against Twinned Data gi|158430471|pdb|2QVW|B Chain B, Structure Of Giardia Dicer Refined Against Twinned Data gi|158430472|pdb|2QVW|C Chain C, Structure Of Giardia Dicer Refined Against Twinned Data gi|158430473|pdb|2QVW|D Chain D, Structure Of Giardia Dicer Refined Against Twinned Data Length = 756 Score = 38.1 bits (87), Expect = 0.85, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%) Query: 35 SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94 S+ + ++RLE LGD +LG +++ L F A G L LV E + + + L L Sbjct: 329 SHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLP 388 Query: 95 SFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 S++L + AD+ E ++ +++ Sbjct: 389 QLAEFSNNLVAK-----SKTWADMYEEIVGSIF 416 >gi|159110564|ref|XP_001705536.1| Dicer [Giardia lamblia ATCC 50803] gi|229485333|sp|A8BQJ3|DCL_GIAIC RecName: Full=Endoribonuclease Dicer-like gi|157433622|gb|EDO77862.1| Dicer [Giardia lamblia ATCC 50803] Length = 754 Score = 38.1 bits (87), Expect = 0.85, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%) Query: 35 SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94 S+ + ++RLE LGD +LG +++ L F A G L LV E + + + L L Sbjct: 327 SHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLP 386 Query: 95 SFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 S++L + AD+ E ++ +++ Sbjct: 387 QLAEFSNNLVAK-----SKTWADMYEEIVGSIF 414 >gi|74188545|dbj|BAE28026.1| unnamed protein product [Mus musculus] Length = 930 Score = 38.1 bits (87), Expect = 0.86, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+AA E Sbjct: 322 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 380 Query: 219 VLK 221 +K Sbjct: 381 AMK 383 >gi|30693732|ref|NP_198923.2| DRB5 (DSRNA-BINDING PROTEIN 5); double-stranded RNA binding [Arabidopsis thaliana] gi|75244423|sp|Q8GY79|DRB5_ARATH RecName: Full=Double-stranded RNA-binding protein 5; AltName: Full=dsRNA-binding protein 5; Short=AtDRB5 gi|26450682|dbj|BAC42450.1| unknown protein [Arabidopsis thaliana] gi|32189297|gb|AAP75803.1| At5g41070 [Arabidopsis thaliana] gi|332007250|gb|AED94633.1| dsRNA-binding protein 5 [Arabidopsis thaliana] Length = 393 Score = 38.1 bits (87), Expect = 0.87, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K +LQE A P Y R GPDH PRF V +G CS + AAA Sbjct: 3 KNQLQELAQRSCFNLPSY-TCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAAA 61 Query: 218 EV 219 EV Sbjct: 62 EV 63 >gi|9759153|dbj|BAB09709.1| unnamed protein product [Arabidopsis thaliana] Length = 384 Score = 38.1 bits (87), Expect = 0.87, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K +LQE A P Y R GPDH PRF V +G CS + AAA Sbjct: 3 KNQLQELAQRSCFNLPSY-TCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAAA 61 Query: 218 EV 219 EV Sbjct: 62 EV 63 >gi|118085593|ref|XP_418563.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 803 Score = 38.1 bits (87), Expect = 0.90, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 16/92 (17%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189 ++R L+ G K +L W + VTP +YK+ ++GP H P F Sbjct: 109 RKRPLEDGNNGHFCKLQLI-WKKVSWSVTPKNALVQLHELKPGLQYKMVSQTGPVHAPVF 167 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V VE++GL +G +K+ A+ AA LK Sbjct: 168 AVAVEVNGLT-FEGTGPTKKKAKMRAAELALK 198 >gi|222615377|gb|EEE51509.1| hypothetical protein OsJ_32675 [Oryza sativa Japonica Group] Length = 830 Score = 38.1 bits (87), Expect = 0.91, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215 K+ LQE+A TPEY TF+ GP H+P F TVV+ + G +++AAEQ A Sbjct: 35 KSRLQEYAQKAGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQSA 92 Query: 216 A 216 A Sbjct: 93 A 93 >gi|159123457|gb|EDP48576.1| hypothetical protein AFUB_080110 [Aspergillus fumigatus A1163] Length = 620 Score = 38.1 bits (87), Expect = 0.92, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 30/170 (17%) Query: 9 LEKRIGYAFANRSLLEKALTHS----SISHSYQESYERLEFLGDRILGLLISTLLF-NHF 63 ++ R+GY F N ++L ALT + + + + RL LG+ ++ L++ + F + Sbjct: 10 VQDRLGYRFKNEAILRLALTAAGKGGAEDGANKRGNSRLAHLGNFLMQFLLAWIGFGDDR 69 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A L+ RFN SA+ C++VA + +L ++ D+R S A V+ + Sbjct: 70 TRADTSTLATRFN---SADHCAKVAEKAELDRCLKY--DMRS------GSRSAVVLRKAV 118 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 A+ +A FVD + L A T L + H FGV P Sbjct: 119 NAI-------MAAIFVDSQDIHQVLM-------AVTNLGLFGHDDFGVDP 154 >gi|116006497|ref|NP_013416.2| Mrpl15p [Saccharomyces cerevisiae S288c] gi|3123277|sp|P36523|RM15_YEAST RecName: Full=54S ribosomal protein L15, mitochondrial; AltName: Full=YmL15; Flags: Precursor gi|2258171|gb|AAB64533.1| Mrpl15p: mitochondrial ribosomal protein YmL15 [Saccharomyces cerevisiae] gi|285813726|tpg|DAA09622.1| TPA: Mrpl15p [Saccharomyces cerevisiae S288c] gi|323303777|gb|EGA57561.1| Mrpl15p [Saccharomyces cerevisiae FostersB] gi|323307957|gb|EGA61214.1| Mrpl15p [Saccharomyces cerevisiae FostersO] Length = 253 Score = 38.1 bits (87), Expect = 0.92, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 14/141 (9%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH---FDSAKE 68 + G +N +L+ LTH S +H + E+L LG + L L + +S + Sbjct: 77 KYGINLSNELILQ-CLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCEN 135 Query: 69 GELSVRFNS--------LVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADV 118 G+LS++F++ L S T + +L FI ++ ++ + T+I A V Sbjct: 136 GQLSLQFSNLGTKFAKELTSKNTACTFVKLHNLDPFIFWKMRDPIKDGHINGETTIFASV 195 Query: 119 VESLIAALYLDGGIEVAGTFV 139 + + I A+ G E A F+ Sbjct: 196 LNAFIGAILSTNGSEKAAKFI 216 >gi|168043507|ref|XP_001774226.1| double-stranded RNA binding protein [Physcomitrella patens subsp. patens] gi|162674494|gb|EDQ61002.1| double-stranded RNA binding protein [Physcomitrella patens subsp. patens] Length = 683 Score = 38.1 bits (87), Expect = 0.93, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 5/88 (5%) Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 K W ++ F K +LQE A P Y R GPDH PRF V +G Sbjct: 50 KRWTVGVVREWAFDCMYKNQLQELAQRSCFNLPAY-ACIREGPDHAPRFKATVNFNGEVF 108 Query: 201 AQGMDCSKRAAEQVAAAEV----LKREG 224 C+ + AAAEV L R G Sbjct: 109 ESPNYCNTLRQAEHAAAEVALNTLSRRG 136 >gi|27652061|gb|AAO17549.1| putative bidentate RNase III [Giardia intestinalis] Length = 627 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%) Query: 35 SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94 S+ + ++RLE LGD +LG +++ L F A G L LV E + + + L L Sbjct: 200 SHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLP 259 Query: 95 SFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 S++L + AD+ E ++ +++ Sbjct: 260 QLAEFSNNLVAK-----SKTWADMYEEIVGSIF 287 >gi|297805542|ref|XP_002870655.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata] gi|297316491|gb|EFH46914.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata] Length = 394 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K +LQE A P Y R GPDH PRF V +G CS + AAA Sbjct: 3 KNQLQELAQRSCFNLPSY-TCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAAA 61 Query: 218 EV 219 EV Sbjct: 62 EV 63 >gi|118405094|ref|NP_001072537.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Xenopus (Silurana) tropicalis] gi|112418622|gb|AAI22034.1| double-stranded RNA activated protein kinase 1 [Xenopus (Silurana) tropicalis] gi|168984501|emb|CAO98764.1| double-stranded RNA activated protein kinase 1 [Xenopus (Silurana) tropicalis] Length = 552 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 23/40 (57%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +GP HDPRFT V ++ +G D K+ AE +AA L Sbjct: 29 TGPSHDPRFTSQVFVNQEKLGEGQDKKKKGAENIAAKMAL 68 >gi|208690891|gb|ACI31221.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Ateles geoffroyi] Length = 552 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA-- 215 K EL ++ K GV YK SGP HD RFT V I G + SK+ A A Sbjct: 11 KEELNKYRQ-KQGVVLRYKELPNSGPPHDRRFTFQVIIDGREFPEAEGRSKKEATNAAAK 69 Query: 216 -AAEVLKREG 224 A E+L RE Sbjct: 70 VAVEILNREN 79 >gi|302771083|ref|XP_002968960.1| hypothetical protein SELMODRAFT_90770 [Selaginella moellendorffii] gi|300163465|gb|EFJ30076.1| hypothetical protein SELMODRAFT_90770 [Selaginella moellendorffii] Length = 128 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 24/137 (17%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF-----DSAKEG 69 Y F + +LL+ ALTHSS S + + L LG I I ++ H+ D+ KE Sbjct: 2 YKFNDSTLLQDALTHSSYS---RHNNGPLHLLGVSI----IRASVYKHYLAKNRDATKE- 53 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSS--DLRKDVCSFMTSIQADVVESLIAALY 127 EL +SL S C++ A L L IR + D + D + A +L A+ Sbjct: 54 ELEAMSSSLSSTTACARRASGLGLDKLIRADAPVDRKSD------KVLAVAFHALFGAIA 107 Query: 128 LDGGIEVAGTFVDKYWK 144 +DG + A + +WK Sbjct: 108 MDGSADQAMSV---FWK 121 >gi|224121666|ref|XP_002318642.1| predicted protein [Populus trichocarpa] gi|222859315|gb|EEE96862.1| predicted protein [Populus trichocarpa] Length = 179 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56 L+ +IGY F N L +A+THSS S QE+ + L LG ++ +S Sbjct: 40 LQNQIGYTFKNIGYLRRAMTHSSFS---QENNKALSILGSNVIDTSVS 84 >gi|222641889|gb|EEE70021.1| hypothetical protein OsJ_29958 [Oryza sativa Japonica Group] Length = 325 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y T RSGP H P F+ VE++G++ A +K+ AE+ AA Sbjct: 89 KNLLQETAHRAGLKLPVY-TTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAA 146 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVAA 216 K +LQE A P Y V R GPDH PRF V +G +C+ R AE AA Sbjct: 3 KNQLQELAQRSCFSLPSY-VCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAA 61 Query: 217 AEVLKR 222 L R Sbjct: 62 EVALAR 67 >gi|307110681|gb|EFN58917.1| hypothetical protein CHLNCDRAFT_140869 [Chlorella variabilis] Length = 171 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+R+ Y F N L+ AL H S + + RL +LGD +LG +S LL+ A Sbjct: 22 ALEQRLNYNFNNTWGLKLALVHPSYG---ELNNARLTWLGDAVLGAAVSDLLYQALPDA 77 >gi|294143002|ref|YP_003558980.1| hypothetical protein SVI_4231 [Shewanella violacea DSS12] gi|293329471|dbj|BAJ04202.1| conserved hypothetical protein [Shewanella violacea DSS12] Length = 289 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 18/116 (15%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL T ++ H + + +F+G+RIL +ST +S +FN + Sbjct: 111 LLPLPYTQEAVEHLSRRIIQVQDFMGERILLENVSTY------------VSCQFNEMTEG 158 Query: 82 ETCSQVARE------LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 E + VAR+ LD+ + S +L +D+ +FM I + V+ + A + D G Sbjct: 159 EFIAAVARQADCYLLLDINNAFVTSKNLNQDMQAFMDVIPVERVKQIHLAGFQDKG 214 >gi|115525231|ref|YP_782142.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris BisA53] gi|115519178|gb|ABJ07162.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris BisA53] Length = 554 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEW----AHA---KFGVTPEYKVTF 179 YL+ G+E++ V++ +R G R+ + EL EW AHA FGV P ++V Sbjct: 48 YLNVGVELSDRVVERGLGERIALVGNGRKRSYRELSEWTNQLAHALVEDFGVRPGHRVLV 107 Query: 180 RSG 182 RSG Sbjct: 108 RSG 110 >gi|145486836|ref|XP_001429424.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|74830341|emb|CAI39051.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia] gi|124396516|emb|CAK62026.1| unnamed protein product [Paramecium tetraurelia] Length = 725 Score = 37.7 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 19/126 (15%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 AN +E+A+ S S + Q +Y+ LE LGD ++ L S +LF E LS Sbjct: 341 LANLDRVEEAI--SCPSFNSQRNYQNLEMLGDVVIKYLTSAMLFEDSKYKTENTLSSARV 398 Query: 77 SLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFMTSI-------------QADVVESL 122 L++ + S + L L + +++S K + + M I QAD+ E+L Sbjct: 399 RLITNKHLSSIYGNLKLNAMNFKINS---KKLLNHMMMIINEHEDSKLSQKQQADIYEAL 455 Query: 123 IAALYL 128 A Y+ Sbjct: 456 CGACYI 461 >gi|215764986|dbj|BAG86683.1| unnamed protein product [Oryza sativa Japonica Group] Length = 357 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y T RSGP H P F+ VE++G++ A +K+ AE+ AA Sbjct: 89 KNLLQETAHRAGLKLPVY-TTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAA 146 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVAA 216 K +LQE A P Y V R GPDH PRF V +G +C+ R AE AA Sbjct: 3 KNQLQELAQRSCFSLPSY-VCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAA 61 Query: 217 AEVLKR 222 L R Sbjct: 62 EVALAR 67 >gi|62912408|gb|AAY21792.1| dsRNA binding protein RBP [Oryza sativa Japonica Group] Length = 410 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215 K+ LQE+A TPEY TF+ GP H+P F TVV+ + G +++AAEQ A Sbjct: 35 KSRLQEYAQKTGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQSA 92 Query: 216 A 216 A Sbjct: 93 A 93 >gi|302819689|ref|XP_002991514.1| hypothetical protein SELMODRAFT_429802 [Selaginella moellendorffii] gi|300140716|gb|EFJ07436.1| hypothetical protein SELMODRAFT_429802 [Selaginella moellendorffii] Length = 569 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 24/39 (61%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 SYE LE LGD L +++ LF +D EG+LS R N+ Sbjct: 323 SYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRNT 361 >gi|115486946|ref|NP_001065960.1| Os12g0109900 [Oryza sativa Japonica Group] gi|122234185|sp|Q0IQN6|DRB8_ORYSJ RecName: Full=Double-stranded RNA-binding protein 8; AltName: Full=dsRNA-binding protein 1; Short=OsDRB1; AltName: Full=dsRNA-binding protein 8 gi|108862090|gb|ABG21849.1| Double-stranded RNA binding motif family protein, expressed [Oryza sativa Japonica Group] gi|113648467|dbj|BAF28979.1| Os12g0109900 [Oryza sativa Japonica Group] Length = 424 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215 K+ LQE+A TPEY TF+ GP H+P F TVV+ + G +++AAEQ A Sbjct: 35 KSRLQEYAQKTGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQSA 92 Query: 216 A 216 A Sbjct: 93 A 93 >gi|125564316|gb|EAZ09696.1| hypothetical protein OsI_31979 [Oryza sativa Indica Group] Length = 357 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y T RSGP H P F+ VE++G++ A +K+ AE+ AA Sbjct: 89 KNLLQETAHRAGLKLPVY-TTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAA 146 Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVAA 216 K +LQE A P Y V R GPDH PRF V +G +C+ R AE AA Sbjct: 3 KNQLQELAQRSCFSLPSY-VCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAA 61 Query: 217 AEVLKR 222 L R Sbjct: 62 EVALAR 67 >gi|302819687|ref|XP_002991513.1| hypothetical protein SELMODRAFT_429800 [Selaginella moellendorffii] gi|300140715|gb|EFJ07435.1| hypothetical protein SELMODRAFT_429800 [Selaginella moellendorffii] Length = 850 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 24/39 (61%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 SYE LE LGD L +++ LF +D EG+LS R N+ Sbjct: 585 SYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRNT 623 >gi|281414105|ref|ZP_06245847.1| RNAse III [Micrococcus luteus NCTC 2665] Length = 130 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 3/107 (2%) Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFG 170 SI AD +E+LI A+Y+D G A V ++ + R D KT + E A ++ G Sbjct: 10 SILADTLEALIGAVYVDHGAVAAAALVHRHVVPLLDEPDLLRESTDWKTVVAE-AASRHG 68 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + GP HDPR+ + + + SK+ AE+ AAA Sbjct: 69 LGAVRYAIEGQGPAHDPRYRATLVVGEREYGSAVASSKKQAERDAAA 115 >gi|149048041|gb|EDM00617.1| adenosine deaminase, RNA-specific, isoform CRA_b [Rattus norvegicus] Length = 1175 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+AA E Sbjct: 567 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 625 Query: 219 VLK 221 +K Sbjct: 626 AMK 628 >gi|71834292|ref|NP_001025236.1| interleukin enhancer binding factor 3a [Danio rerio] gi|66911683|gb|AAH96956.1| Zgc:113842 [Danio rerio] Length = 820 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 3/72 (4%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 R++ L + + G YK+ ++GP+H+P+F++ VE+ G+ + SKR+A+ Sbjct: 456 RKEPPNALMKLNQLRPGTV--YKLASQTGPEHEPQFSMTVEVDGVT-YEATGPSKRSAKL 512 Query: 214 VAAAEVLKREGI 225 A +VL G+ Sbjct: 513 HVAQKVLVALGV 524 >gi|74140777|dbj|BAC40888.2| unnamed protein product [Mus musculus] Length = 1173 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+AA E Sbjct: 570 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 628 Query: 219 VLK 221 +K Sbjct: 629 AMK 631 >gi|13591904|ref|NP_112268.1| double-stranded RNA-specific adenosine deaminase [Rattus norvegicus] gi|1706533|sp|P55266|DSRAD_RAT RecName: Full=Double-stranded RNA-specific adenosine deaminase; Short=DRADA gi|755817|gb|AAA65039.1| double-stranded RNA-specific adenosine deaminase [Rattus norvegicus] Length = 1175 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+AA E Sbjct: 567 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 625 Query: 219 VLK 221 +K Sbjct: 626 AMK 628 >gi|195641916|gb|ACG40426.1| double-stranded RNA binding motif family protein [Zea mays] gi|195644492|gb|ACG41714.1| double-stranded RNA binding motif family protein [Zea mays] Length = 352 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y T RSGP H P F+ VE++GL+ A +K+ AE+ AA Sbjct: 89 KNLLQETAHRAGLKLPAY-TTVRSGPGHSPVFSSTVELAGLSFAGDPARTKKQAEKNAA 146 >gi|9229939|dbj|BAB00641.1| dsRNA-binding protein ODB1 [Oryza sativa Japonica Group] Length = 425 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215 K+ LQE+A TPEY TF+ GP H+P F TVV+ + G +++AAEQ A Sbjct: 35 KSRLQEYAQKTGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQSA 92 Query: 216 A 216 A Sbjct: 93 A 93 >gi|27768964|gb|AAH42505.1| Adenosine deaminase, RNA-specific [Mus musculus] Length = 1152 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+AA E Sbjct: 570 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 628 Query: 219 VLK 221 +K Sbjct: 629 AMK 631 >gi|71059975|emb|CAJ18531.1| Adar [Mus musculus] Length = 1152 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+AA E Sbjct: 570 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 628 Query: 219 VLK 221 +K Sbjct: 629 AMK 631 >gi|13236214|gb|AAK16102.1|AF291876_1 RNA adenosine deaminase 1 [Mus musculus] Length = 1178 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+AA E Sbjct: 570 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 628 Query: 219 VLK 221 +K Sbjct: 629 AMK 631 >gi|226371677|ref|NP_001139768.1| double-stranded RNA-specific adenosine deaminase isoform 3 [Mus musculus] gi|38372251|sp|Q99MU3|DSRAD_MOUSE RecName: Full=Double-stranded RNA-specific adenosine deaminase; Short=DRADA; AltName: Full=RNA adenosine deaminase 1 gi|148683239|gb|EDL15186.1| adenosine deaminase, RNA-specific, isoform CRA_b [Mus musculus] Length = 1178 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+AA E Sbjct: 570 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 628 Query: 219 VLK 221 +K Sbjct: 629 AMK 631 >gi|13272339|gb|AAK17103.1|AF291050_1 RNA adenosine deaminase 1 [Mus musculus] Length = 1152 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+AA E Sbjct: 570 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 628 Query: 219 VLK 221 +K Sbjct: 629 AMK 631 >gi|226371679|ref|NP_062629.3| double-stranded RNA-specific adenosine deaminase isoform 1 [Mus musculus] gi|148683238|gb|EDL15185.1| adenosine deaminase, RNA-specific, isoform CRA_a [Mus musculus] Length = 1152 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+AA E Sbjct: 570 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 628 Query: 219 VLK 221 +K Sbjct: 629 AMK 631 >gi|302816661|ref|XP_002990009.1| hypothetical protein SELMODRAFT_130786 [Selaginella moellendorffii] gi|300142320|gb|EFJ09022.1| hypothetical protein SELMODRAFT_130786 [Selaginella moellendorffii] Length = 127 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 24/140 (17%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF-----DSAKEG 69 Y F + +LL+ ALTHSS S + + L LG I I ++ H+ D+ KE Sbjct: 1 YKFNDSTLLQDALTHSSYS---RHNNGPLHLLGVSI----IRASVYKHYLAKNRDATKE- 52 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIR--VSSDLRKDVCSFMTSIQADVVESLIAALY 127 EL +SL S C++ A L L IR V D + D + A L A+ Sbjct: 53 ELEAMSSSLSSTTACARRASGLGLDKLIRADVPVDRKSD------KVLAVAFHVLFGAIA 106 Query: 128 LDGGIEVAGTFVDKYWKQRA 147 +DG + A + +WK ++ Sbjct: 107 MDGSADQAMSV---FWKIKS 123 >gi|2981097|gb|AAC06233.1| double-stranded RNA-specific adenosine deaminase [Mus musculus] Length = 1152 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+AA E Sbjct: 570 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 628 Query: 219 VLK 221 +K Sbjct: 629 AMK 631 >gi|297818244|ref|XP_002877005.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata] gi|297322843|gb|EFH53264.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata] Length = 356 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K +LQE A P Y T R GPDH PRF V +G CS + +AA Sbjct: 3 KNQLQELAQRSCFNLPSYTCT-REGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSAA 61 Query: 218 EV 219 EV Sbjct: 62 EV 63 >gi|169607859|ref|XP_001797349.1| hypothetical protein SNOG_06991 [Phaeosphaeria nodorum SN15] gi|111064522|gb|EAT85642.1| hypothetical protein SNOG_06991 [Phaeosphaeria nodorum SN15] Length = 843 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 15/131 (11%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHS-YQES--YE-----RLEFLGDRILGLLISTLLF 60 LE R+GY F NR +AL + HS Y + YE RL LGDR+L L + + F Sbjct: 105 LEVRLGYTFQNRMTGIEALKVTGNVHSLYYDGAVYETGMNNRLALLGDRVLSLALCEIWF 164 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 D G +L+S++T S+ A + S L D A+ E Sbjct: 165 -QTDHPNGG------YALMSSQTVSRAALAVTGHKLGLHLSILTGDGKGVTRDNIAETFE 217 Query: 121 SLIAALYLDGG 131 +++ A+Y+D G Sbjct: 218 AIMGAVYVDSG 228 >gi|108802827|gb|ABG21364.1| eukaryotic translation initiation factor 2 alpha kinase 2 [Mesocricetus auratus] Length = 473 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 26/51 (50%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 H K VT YK F +GP HD RFT V I G + +K+ A+ AA Sbjct: 17 HQKHRVTITYKHLFTTGPPHDRRFTFQVIIDGEEFPEAEGKTKQEAKNAAA 67 >gi|79420704|ref|NP_189329.3| DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA binding [Arabidopsis thaliana] gi|145322916|ref|NP_001030779.2| DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA binding [Arabidopsis thaliana] gi|75273549|sp|Q9LJF5|DRB3_ARATH RecName: Full=Double-stranded RNA-binding protein 3; AltName: Full=dsRNA-binding protein 3; Short=AtDRB3 gi|11994159|dbj|BAB01188.1| unnamed protein product [Arabidopsis thaliana] gi|45773934|gb|AAS76771.1| At3g26932 [Arabidopsis thaliana] gi|62321583|dbj|BAD95129.1| putative protein [Arabidopsis thaliana] gi|332643724|gb|AEE77245.1| dsRNA-binding protein 3 [Arabidopsis thaliana] gi|332643725|gb|AEE77246.1| dsRNA-binding protein 3 [Arabidopsis thaliana] Length = 359 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K +LQE A P Y T R GPDH PRF V +G CS + +AA Sbjct: 3 KNQLQELAQRSCFSLPSYTCT-REGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSAA 61 Query: 218 EV 219 EV Sbjct: 62 EV 63 >gi|226502082|ref|NP_001146877.1| RNA binding protein [Zea mays] gi|195604576|gb|ACG24118.1| RNA binding protein [Zea mays] Length = 179 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 15/28 (53%), Positives = 21/28 (75%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH 34 + L+ R+GYAF +LL +A+THSS SH Sbjct: 38 AALQSRVGYAFRAPALLRRAMTHSSYSH 65 >gi|102139807|gb|ABF69992.1| double-stranded RNA-binding (DsRBD) domain-containing protein [Musa acuminata] Length = 610 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K +LQE A P Y + R GPDH PRF V +G A CS + +AA Sbjct: 3 KNQLQELAQRSCFNLPSY-ASIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHSAA 61 Query: 218 EV 219 EV Sbjct: 62 EV 63 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y T RSGP H P FT VE++G++ +K+ A++ AA Sbjct: 89 KNLLQETAHRAGLKLPVY-TTVRSGPGHTPIFTCTVELAGMSFTGDPAKTKKQAQKNAA 146 >gi|39942154|ref|XP_360614.1| hypothetical protein MGG_03157 [Magnaporthe oryzae 70-15] gi|145015863|gb|EDK00353.1| hypothetical protein MGG_03157 [Magnaporthe oryzae 70-15] Length = 402 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 13/141 (9%) Query: 19 NRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 + S+ + A THSS+ S +SY+RLE+LGD L L + ++ F + G S Sbjct: 125 DPSIEKAAFTHSSVIGNKLSGVQSYDRLEWLGDAYLELFATCFIYQTFPALSHGASSQLR 184 Query: 76 NSLVSAETCSQVARELDLASFIRVSSD---LRKDVCSFM----TSIQADVVESLIAALYL 128 L+ ++ +Q + L R+ + L + M T I D+ E+ + A+ Sbjct: 185 EVLIRNDSLAQWTQAYGLEKRARLPPEFAGLNHSGQAMMQKKRTKIYGDLFEAYVGAIIA 244 Query: 129 DG---GIEVAGTFVDKYWKQR 146 G + A ++ W R Sbjct: 245 SDPVHGTDRAAVWLKSLWAPR 265 >gi|302693867|ref|XP_003036612.1| hypothetical protein SCHCODRAFT_30567 [Schizophyllum commune H4-8] gi|300110309|gb|EFJ01710.1| hypothetical protein SCHCODRAFT_30567 [Schizophyllum commune H4-8] Length = 216 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 7/107 (6%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL-VSAETCSQVARELDLASFIRV 99 E+ E LGD +LGL+++T + + + G S + +L V + + ++ + L ++V Sbjct: 43 EKFEHLGDTVLGLVVTTQIQQMYPGLRVGP-STKIRALVVGNQNLAAISVKYKLPERLKV 101 Query: 100 SSDLRKDVCSFMTS--IQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + V S S +QAD+ E+ + L+L G+ V ++ ++ Sbjct: 102 HA---AQVVSLKASVNVQADLFEAYVGGLFLHRGLSVVEAWLKPLFR 145 >gi|169146118|emb|CAQ15450.1| novel protein similar to H.sapiens PRKRA, protein kinase, interferon-inducible double stranded RNA dependent activator (PRKRA, zgc:162619) [Danio rerio] Length = 300 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE A + PEY V +GP H FT+ + GL G SK+ A + AA ++ Sbjct: 122 LQELAMQRVWCLPEYVVFMETGPGHMKEFTIACRLEGLE-ETGSGSSKKLARRAAAENMI 180 Query: 221 KR 222 + Sbjct: 181 AK 182 >gi|302782383|ref|XP_002972965.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii] gi|302823467|ref|XP_002993386.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii] gi|300138817|gb|EFJ05571.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii] gi|300159566|gb|EFJ26186.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii] Length = 386 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE A P Y T RSGP H P FT VVE++G+ +K+ AE+ AA Sbjct: 89 KNLLQETAQRANVPLPTYTTT-RSGPGHLPVFTCVVEVAGMNFTGDAGKTKKQAEKNAA 146 >gi|125551761|gb|EAY97470.1| hypothetical protein OsI_19399 [Oryza sativa Indica Group] Length = 787 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215 K+ LQE+A TPEY T + GP H+P F TVV+ + G +++AAEQ A Sbjct: 37 KSRLQEYAQKAGLQTPEYH-TSKEGPSHEPVFKSTVVINNTSYGSLPGFS-NRKAAEQSA 94 Query: 216 A 216 A Sbjct: 95 A 95 >gi|328951087|ref|YP_004368422.1| double-stranded RNA binding domain protein [Marinithermus hydrothermalis DSM 14884] gi|328451411|gb|AEB12312.1| double-stranded RNA binding domain protein [Marinithermus hydrothermalis DSM 14884] Length = 158 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K+ L + K PE+ T +GP+HDP F V ++G A G +KR AE++AA Sbjct: 5 KSALIAYCRTKGLAGPEFD-TRGTGPEHDPLFISDVMVNGTVVATGQGRTKREAERIAA 62 >gi|222631053|gb|EEE63185.1| hypothetical protein OsJ_17994 [Oryza sativa Japonica Group] Length = 787 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215 K+ LQE+A TPEY T + GP H+P F TVV+ + G +++AAEQ A Sbjct: 37 KSRLQEYAQKAGLQTPEYH-TSKEGPSHEPVFKSTVVINNTSYGSLPGFS-NRKAAEQSA 94 Query: 216 A 216 A Sbjct: 95 A 95 >gi|296229001|ref|XP_002760089.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform 1 [Callithrix jacchus] Length = 1226 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V++ SK+ A+Q+AA E Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQMAAEE 675 Query: 219 VLK 221 +K Sbjct: 676 AMK 678 >gi|296229005|ref|XP_002760091.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform 3 [Callithrix jacchus] Length = 1181 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V++ SK+ A+Q+AA E Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQMAAEE 675 Query: 219 VLK 221 +K Sbjct: 676 AMK 678 >gi|115483791|ref|NP_001065557.1| Os11g0109900 [Oryza sativa Japonica Group] gi|122221791|sp|Q0IV63|DRB7_ORYSJ RecName: Full=Double-stranded RNA-binding protein 7; AltName: Full=dsRNA-binding protein 7 gi|108863922|gb|ABG22335.1| Double-stranded RNA binding motif family protein, expressed [Oryza sativa Japonica Group] gi|113644261|dbj|BAF27402.1| Os11g0109900 [Oryza sativa Japonica Group] gi|215686684|dbj|BAG88937.1| unnamed protein product [Oryza sativa Japonica Group] gi|215768461|dbj|BAH00690.1| unnamed protein product [Oryza sativa Japonica Group] Length = 473 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215 K+ LQE+A TPEY TF+ GP H+P F TVV+ + G +++AAEQ A Sbjct: 35 KSRLQEYAQKAGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQSA 92 Query: 216 A 216 A Sbjct: 93 A 93 >gi|251764897|sp|B0V3F8|PRKRA_DANRE RecName: Full=Interferon-inducible double stranded RNA-dependent protein kinase activator A homolog gi|169146119|emb|CAQ15451.1| novel protein similar to H.sapiens PRKRA, protein kinase, interferon-inducible double stranded RNA dependent activator (PRKRA, zgc:162619) [Danio rerio] Length = 282 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE A + PEY V +GP H FT+ + GL G SK+ A + AA ++ Sbjct: 104 LQELAMQRVWCLPEYVVFMETGPGHMKEFTIACRLEGLE-ETGSGSSKKLARRAAAENMI 162 Query: 221 KR 222 + Sbjct: 163 AK 164 >gi|326495676|dbj|BAJ85934.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 364 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y T RSGP H P F VE++GL+ A +K+ AE+ AA Sbjct: 89 KNLLQETAHRAGLKLPAY-TTVRSGPGHSPVFASSVELAGLSFAGDAARTKKQAEKNAA 146 Score = 36.2 bits (82), Expect = 3.2, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 29/67 (43%), Gaps = 4/67 (5%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK--RAAEQVA 215 K +LQE A P Y V R GPDH PRF V +G G C R AE A Sbjct: 3 KNQLQELAQRSCFSLPSY-VCTREGPDHAPRFKATVTFNGET-FHGPTCCTTLRQAEHAA 60 Query: 216 AAEVLKR 222 A L R Sbjct: 61 AEVALAR 67 >gi|148235737|ref|NP_001082830.1| interferon-inducible double stranded RNA-dependent protein kinase activator A [Danio rerio] gi|134025033|gb|AAI35035.1| Zgc:162619 protein [Danio rerio] Length = 282 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE A + PEY V +GP H FT+ + GL G SK+ A + AA ++ Sbjct: 104 LQELAMQRVWCLPEYVVFMETGPGHMKEFTIACRLEGLE-ETGSGSSKKLARRAAAENMI 162 Query: 221 KR 222 + Sbjct: 163 AK 164 >gi|296229003|ref|XP_002760090.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform 2 [Callithrix jacchus] Length = 1200 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V++ SK+ A+Q+AA E Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQMAAEE 675 Query: 219 VLK 221 +K Sbjct: 676 AMK 678 >gi|222630219|gb|EEE62351.1| hypothetical protein OsJ_17140 [Oryza sativa Japonica Group] Length = 606 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y T RSGP H P FT VE++G+ +K+ A++ AA Sbjct: 102 KNLLQETAHRAGLKLPVY-TTIRSGPGHTPVFTCTVELAGMTFTGNPGKTKKQAQKNAA 159 Score = 34.7 bits (78), Expect = 10.0, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG---LAPA--QGMDCSKRAAE 212 K +LQE A P Y R GPDH PRF V +G +PA + ++ AA Sbjct: 16 KNQLQELAQRSCFNLPSY-ACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAAA 74 Query: 213 QVAAAEVLKR 222 +VA E+ KR Sbjct: 75 EVALNELSKR 84 >gi|225451531|ref|XP_002275052.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296082307|emb|CBI21312.3| unnamed protein product [Vitis vinifera] Length = 481 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 4/68 (5%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ---V 214 K LQE AH + G+ T RSGP H P FT VE++G+ +K+ AE+ + Sbjct: 89 KNLLQETAH-RAGLNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGESAKTKKQAEKNAAI 147 Query: 215 AAAEVLKR 222 AA LKR Sbjct: 148 AAWSALKR 155 >gi|321476628|gb|EFX87588.1| hypothetical protein DAPPUDRAFT_221551 [Daphnia pulex] Length = 200 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L EW + P+Y+V SGP H + + ++ G +G SK+AA+ VAA ++L Sbjct: 134 LTEWCLTRLSNLPDYRVVRTSGPSHSKTYFMTCKL-GDRVTEGEGKSKKAAKNVAAGKML 192 Query: 221 K 221 + Sbjct: 193 Q 193 >gi|156844538|ref|XP_001645331.1| hypothetical protein Kpol_1058p10 [Vanderwaltozyma polyspora DSM 70294] gi|156115992|gb|EDO17473.1| hypothetical protein Kpol_1058p10 [Vanderwaltozyma polyspora DSM 70294] Length = 1066 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 17/141 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLE-KALTHSSISHSYQES--YERLEFLGDRILGLLIST 57 +S+ + +EKRIG A + E K L SS+ S E+ Y+++ L IL +I+ Sbjct: 616 ISSNSFCIVEKRIGKIMAIKGKWELKYLDESSLIASKLETITYQKIMNLQRSILHKIINH 675 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 ++ + + K +S CSQ A E L +I D + SF TS+ A Sbjct: 676 MIIDSLNQLK-----------ISNRVCSQEAIEKALPDYIISDLDSENSLDSFRTSLPA- 723 Query: 118 VVESLIAALYLDGGIEVAGTF 138 S I AL L+ + ++ T Sbjct: 724 --YSSIIALELNSLLNISNTL 742 >gi|115462131|ref|NP_001054665.1| Os05g0150400 [Oryza sativa Japonica Group] gi|122169532|sp|Q0DKP4|DRB2_ORYSJ RecName: Full=Double-stranded RNA-binding protein 2; AltName: Full=dsRNA-binding protein 2; AltName: Full=dsRNA-binding protein 3; Short=OsDRB3 gi|113578216|dbj|BAF16579.1| Os05g0150400 [Oryza sativa Japonica Group] Length = 593 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y T RSGP H P FT VE++G+ +K+ A++ AA Sbjct: 89 KNLLQETAHRAGLKLPVY-TTIRSGPGHTPVFTCTVELAGMTFTGNPGKTKKQAQKNAA 146 >gi|26337823|dbj|BAC32597.1| unnamed protein product [Mus musculus] Length = 701 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 16/92 (17%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189 ++R L+ G K +L W + VTP +Y++ ++GP H P F Sbjct: 98 RKRPLEEGNGGHFCKLQLI-WKKLSWSVTPKNALVQLHELKPGLQYRMVSQTGPVHAPVF 156 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V VE++GL +G +K+ A+ AA LK Sbjct: 157 AVAVEVNGLT-FEGTGPTKKKAKMRAAEMALK 187 >gi|40788412|dbj|BAD07039.1| hypothetical protein [Oryza sativa Japonica Group] Length = 397 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 K LQE AH P Y T RSGP H P F+ VE++G++ A +K+ AE+ Sbjct: 112 KNLLQETAHRAGLKLPVY-TTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEK 166 >gi|37590574|gb|AAH59822.1| Adarb2 protein [Mus musculus] Length = 701 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 16/92 (17%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189 ++R L+ G K +L W + VTP +Y++ ++GP H P F Sbjct: 98 RKRPLEEGNGGHFCKLQLI-WKKLSWSVTPKNALVQLHELKPGLQYRMVSQTGPVHAPVF 156 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V VE++GL +G +K+ A+ AA LK Sbjct: 157 AVAVEVNGLT-FEGTGPTKKKAKMRAAEMALK 187 >gi|119573569|gb|EAW53184.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens] gi|119573574|gb|EAW53189.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens] Length = 886 Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 322 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 380 Query: 219 VLK 221 +K Sbjct: 381 AMK 383 >gi|8571466|gb|AAF76894.1|AF270495_1 RNA dependent adenosine deaminase 3 [Mus musculus] Length = 745 Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 16/92 (17%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189 ++R L+ G K +L W + VTP +Y++ ++GP H P F Sbjct: 98 RKRPLEEGNGGHFCKLQLI-WKKLSWSVTPKNALVQLHELKPGLQYRMVSQTGPVHAPVF 156 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V VE++GL +G +K+ A+ AA LK Sbjct: 157 AVAVEVNGLT-FEGTGPTKKKAKMRAAEMALK 187 >gi|119573573|gb|EAW53188.1| adenosine deaminase, RNA-specific, isoform CRA_e [Homo sapiens] Length = 905 Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 322 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 380 Query: 219 VLK 221 +K Sbjct: 381 AMK 383 >gi|168048373|ref|XP_001776641.1| double-stranded RNA binding protein [Physcomitrella patens subsp. patens] gi|162671933|gb|EDQ58477.1| double-stranded RNA binding protein [Physcomitrella patens subsp. patens] Length = 1053 Score = 36.6 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 W+++ ++ K LQE A + GV+ T RSGP H P FT VE++ + + Sbjct: 330 WEEQGMRVWDETGVCKNLLQETAQ-RAGVSLPVYATTRSGPGHLPVFTCTVEVASMTFSG 388 Query: 203 GMDCSKRAAEQVAA 216 +K+ AE+ AA Sbjct: 389 EAAKTKKQAEKNAA 402 Score = 36.2 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 30/71 (42%), Gaps = 5/71 (7%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K +LQE A P Y R GPDH PRF V +G C+ + AAA Sbjct: 232 KNQLQELAQRSCFNLPAY-ACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHAAA 290 Query: 218 EV----LKREG 224 EV L R G Sbjct: 291 EVALNTLSRRG 301 >gi|74148073|dbj|BAE22359.1| unnamed protein product [Mus musculus] Length = 745 Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 16/92 (17%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189 ++R L+ G K +L W + VTP +Y++ ++GP H P F Sbjct: 98 RKRPLEEGNGGHFCKLQLI-WKKLSWSVTPKNALVQLHELKPGLQYRMVSQTGPVHAPVF 156 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V VE++GL +G +K+ A+ AA LK Sbjct: 157 AVAVEVNGLT-FEGTGPTKKKAKMRAAEMALK 187 >gi|147820257|emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera] Length = 552 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 4/68 (5%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ---V 214 K LQE AH + G+ T RSGP H P FT VE++G+ +K+ AE+ + Sbjct: 160 KNLLQETAH-RAGLNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGESAKTKKQAEKNAAI 218 Query: 215 AAAEVLKR 222 AA LKR Sbjct: 219 AAWSALKR 226 >gi|31542106|ref|NP_443209.2| double-stranded RNA-specific editase B2 [Mus musculus] gi|33112435|sp|Q9JI20|RED2_MOUSE RecName: Full=Double-stranded RNA-specific editase B2; AltName: Full=RNA-dependent adenosine deaminase 3; AltName: Full=RNA-editing deaminase 2; AltName: Full=RNA-editing enzyme 2; AltName: Full=dsRNA adenosine deaminase B2 gi|26329549|dbj|BAC28513.1| unnamed protein product [Mus musculus] gi|30851427|gb|AAH52426.1| Adenosine deaminase, RNA-specific, B2 [Mus musculus] gi|74224054|dbj|BAE23882.1| unnamed protein product [Mus musculus] gi|74226553|dbj|BAE23939.1| unnamed protein product [Mus musculus] gi|148700330|gb|EDL32277.1| adenosine deaminase, RNA-specific, B2, isoform CRA_b [Mus musculus] Length = 745 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 16/92 (17%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189 ++R L+ G K +L W + VTP +Y++ ++GP H P F Sbjct: 98 RKRPLEEGNGGHFCKLQLI-WKKLSWSVTPKNALVQLHELKPGLQYRMVSQTGPVHAPVF 156 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V VE++GL +G +K+ A+ AA LK Sbjct: 157 AVAVEVNGLT-FEGTGPTKKKAKMRAAEMALK 187 >gi|321468345|gb|EFX79330.1| hypothetical protein DAPPUDRAFT_244967 [Daphnia pulex] Length = 96 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L EW + PEY+V +SGP H + + ++S +G SK+AA+ AA ++L Sbjct: 30 LSEWRFTRHSSLPEYRVVRKSGPSHSKTYFMTCKLSDRV-TEGEGKSKKAAKNDAAQKML 88 Query: 221 K 221 + Sbjct: 89 Q 89 >gi|41053389|ref|NP_956291.1| RISC-loading complex subunit tarbp2 [Danio rerio] gi|82240186|sp|Q7SXR1|TRBP2_DANRE RecName: Full=RISC-loading complex subunit tarbp2 gi|33311802|gb|AAH55390.1| TAR (HIV) RNA binding protein 2 [Danio rerio] Length = 346 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 10/96 (10%) Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTE----LQEWAHAKFGVTPEYKVTFRSGPDHD 186 GIE+ G Q +KS + A+ LQE K PEY VT SGP H Sbjct: 115 GIEMEGE-----CPQSEMKSSSSTQQAECNPVGALQELVVQKGWRLPEYTVTQESGPAHR 169 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 FT+ + G SK+ A++ AAA++L R Sbjct: 170 KEFTMTCRVERFVEI-GSGTSKKLAKRNAAAKMLSR 204 >gi|2326524|emb|CAA55967.1| IFI-4 [Homo sapiens] gi|12711292|emb|CAA67169.1| dsRNA adenosine deaminase [Homo sapiens] Length = 931 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 322 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 380 Query: 219 VLK 221 +K Sbjct: 381 AMK 383 >gi|169605473|ref|XP_001796157.1| hypothetical protein SNOG_05760 [Phaeosphaeria nodorum SN15] gi|111065704|gb|EAT86824.1| hypothetical protein SNOG_05760 [Phaeosphaeria nodorum SN15] Length = 159 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 16/142 (11%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSI-------SHSYQESYERLEFLGDRILGL 53 +SAL S E + + F NR LL +AL ++ + SH Q + + L LGD + Sbjct: 8 ISALILSACEALLSHTFTNRLLLLEALNNTGLPLVYNAKSHVLQRN-DALAVLGDARMDA 66 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 ++ ++ +G+ S T +Q+ R L + +++ K+ + + S Sbjct: 67 ILCRWWWDAGFQRVKGQWSQARLDKCGNVTLAQLGRRLGVDTYV------IKNPGTVVVS 120 Query: 114 --IQADVVESLIAALYLDGGIE 133 + A VE+L+ A+YLDGG E Sbjct: 121 DKMVAMAVEALMGAVYLDGGEE 142 >gi|70167113|ref|NP_001020278.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo sapiens] gi|301601658|ref|NP_001180424.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo sapiens] gi|55666218|emb|CAH71907.1| adenosine deaminase, RNA-specific [Homo sapiens] gi|55960911|emb|CAI16183.1| adenosine deaminase, RNA-specific [Homo sapiens] gi|55961272|emb|CAI17375.1| adenosine deaminase, RNA-specific [Homo sapiens] gi|119573568|gb|EAW53183.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens] gi|119573572|gb|EAW53187.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens] Length = 931 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 322 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 380 Query: 219 VLK 221 +K Sbjct: 381 AMK 383 >gi|8699065|gb|AAF78580.1| RNA adenosine deaminase RED2 [Mus musculus] Length = 731 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 16/92 (17%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189 ++R L+ G K +L W + VTP +Y++ ++GP H P F Sbjct: 88 RKRPLEEGNGGHFCKLQLI-WKKLSWSVTPKNALVQLHELKPGLQYRMVSQTGPVHAPVF 146 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V VE++GL +G +K+ A+ AA LK Sbjct: 147 AVAVEVNGLT-FEGTGPTKKKAKMRAAEMALK 177 >gi|116204679|ref|XP_001228150.1| hypothetical protein CHGG_10223 [Chaetomium globosum CBS 148.51] gi|88176351|gb|EAQ83819.1| hypothetical protein CHGG_10223 [Chaetomium globosum CBS 148.51] Length = 327 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 26 ALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 ALTHS + + + SYE+LE++GD L L+ S L+ F + G S LV T Sbjct: 75 ALTHSGMRKNLSDPSYEQLEWIGDVYLELIASELISQTFPTLDPGRSSHYREMLVRNSTL 134 Query: 85 SQVA 88 Q A Sbjct: 135 GQFA 138 >gi|332810381|ref|XP_513841.3| PREDICTED: double-stranded RNA-specific adenosine deaminase [Pan troglodytes] Length = 931 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 322 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 380 Query: 219 VLK 221 +K Sbjct: 381 AMK 383 >gi|148700329|gb|EDL32276.1| adenosine deaminase, RNA-specific, B2, isoform CRA_a [Mus musculus] Length = 742 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 16/92 (17%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189 ++R L+ G K +L W + VTP +Y++ ++GP H P F Sbjct: 98 RKRPLEEGNGGHFCKLQLI-WKKLSWSVTPKNALVQLHELKPGLQYRMVSQTGPVHAPVF 156 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V VE++GL +G +K+ A+ AA LK Sbjct: 157 AVAVEVNGLT-FEGTGPTKKKAKMRAAEMALK 187 >gi|226498844|ref|NP_001146621.1| hypothetical protein LOC100280218 [Zea mays] gi|219888055|gb|ACL54402.1| unknown [Zea mays] gi|224029829|gb|ACN33990.1| unknown [Zea mays] Length = 289 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K +LQE A P Y R GPDH PRF V +G + CS + AAA Sbjct: 3 KNQLQELAQRSCFNLPSYSC-IREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAAA 61 Query: 218 EVLKRE 223 EV E Sbjct: 62 EVALNE 67 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH + G+ T RSGP H P F VE++G A +K+ A++ AA Sbjct: 89 KNLLQETAH-RAGLKLPIYTTIRSGPGHTPVFACTVELAGKAFTGNPGKTKKQAQKNAA 146 >gi|145523894|ref|XP_001447780.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124415302|emb|CAK80383.1| unnamed protein product [Paramecium tetraurelia] Length = 357 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 52/236 (22%), Positives = 101/236 (42%), Gaps = 33/236 (13%) Query: 15 YAFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNHFDS 65 ++F N + L +ALT+ YQ + E +G IL S L Sbjct: 48 FSFQNTNTLAQALTNKIHELEYQSKKGTKYPFGNNEDFVGIGQMILEFFFSDYLIQRGYP 107 Query: 66 AKE------GELSVRFNSLVSAETCSQVARELDLASFIRVSS--DLRKDVCSFMTSIQAD 117 KE +L + L+S + +A + + ++V + +L+K+ I A+ Sbjct: 108 NKETQIKKSSDLVLLRQRLLSERNLADIALSYKIDNIVQVGNQINLKKN-----PKILAE 162 Query: 118 VVESLIAALYLDGGI------EVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKFG 170 ++S+IAA Y D G EV + + K +A+ + +++ K+ E+ + Sbjct: 163 TLKSIIAAQYYDSGYDLDHLREVVQPILKQVLDKGQAVPLVELKQNPKSAFLEFVNGCTN 222 Query: 171 VTPEYKVTFR--SGPDHDP--RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + P+ V ++ S + +P + V +E++ L + +KR EQ+ + LKR Sbjct: 223 LKPKVSVEWKKDSSQNGNPINIYQVQLELNNLLLIKREGVNKRNTEQLVYRDALKR 278 >gi|281210415|gb|EFA84581.1| hypothetical protein PPL_01571 [Polysphondylium pallidum PN500] Length = 198 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 12/92 (13%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFD-SAKEGELSVRFNSLVSAETCSQVARELDLASF 96 + +E E GD+ILG + ++ +D K G S +S V+ ET SQ+ L++ + Sbjct: 39 DDFENKECFGDKILGYRVVEMVTTEYDFVPKPGTTSRILDSSVANETLSQLYSRLEIEPY 98 Query: 97 IR--VSSDLRKDVCSFMTSIQADVVESLIAAL 126 I S+ +K +ADVVE +I L Sbjct: 99 ITGPAFSNYKK---------KADVVEVIICEL 121 >gi|297663364|ref|XP_002810145.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 4 [Pongo abelii] gi|297663366|ref|XP_002810146.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 5 [Pongo abelii] Length = 931 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 322 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 380 Query: 219 VLK 221 +K Sbjct: 381 AMK 383 >gi|156396886|ref|XP_001637623.1| predicted protein [Nematostella vectensis] gi|156224737|gb|EDO45560.1| predicted protein [Nematostella vectensis] Length = 332 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG 52 A++ EKRIGY F+N+ L +ALTH+ SY ++ + F G +L Sbjct: 190 AVQLQGFEKRIGYEFSNKLYLIQALTHA----SYSQNSPKHHFFGHALLA 235 >gi|28277444|gb|AAH44344.1| Adar protein [Danio rerio] Length = 917 Score = 36.6 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 25/44 (56%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T + GP HDPRF V++ + SK+AA Q+AA E +K Sbjct: 764 TGQEGPSHDPRFMFRVKVGERLFQEASAPSKKAARQLAAEEAVK 807 >gi|73696282|gb|AAZ80928.1| nuclear RNase III Drosha [Macaca mulatta] Length = 174 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC--SFMTSIQADVVE 120 F S +EG L+ ++V + + +A++L+L F+ + D+C S + A+ E Sbjct: 2 FPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHG--PDLCRESDLRHAMANCFE 59 Query: 121 SLIAALYLDGGIEVA 135 +LI A+YL+G +E A Sbjct: 60 ALIGAVYLEGSLEEA 74 >gi|3334381|sp|Q91836|PRKAB_XENLA RecName: Full=Interferon-inducible double stranded RNA-dependent protein kinase activator A homolog B; AltName: Full=Double-stranded RNA-binding protein A; AltName: Full=XlRBPA gi|214739|gb|AAA49947.1| RNA binding protein [Xenopus laevis] Length = 298 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE A K PEY V SGP H FT+ + G SK+ A++VAA ++L Sbjct: 117 LQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFV-ETGSGTSKQVAKRVAAEKLL 175 Query: 221 KR 222 + Sbjct: 176 TK 177 >gi|148234413|ref|NP_001079500.1| protein kinase, interferon-inducible double stranded RNA dependent activator [Xenopus laevis] gi|82176774|sp|Q7ZYA5|PRKAA_XENLA RecName: Full=Interferon-inducible double stranded RNA-dependent protein kinase activator A homolog A gi|27696370|gb|AAH43873.1| Rbpa protein [Xenopus laevis] Length = 309 Score = 36.2 bits (82), Expect = 3.2, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE A K PEY V SGP H FT+ + G SK+ A++VAA ++L Sbjct: 128 LQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFV-ETGSGTSKQVAKRVAAEKLL 186 Query: 221 KR 222 + Sbjct: 187 TK 188 >gi|242821621|ref|XP_002487717.1| dsRNA-specific ribonuclease III, putative [Talaromyces stipitatus ATCC 10500] gi|218712638|gb|EED12063.1| dsRNA-specific ribonuclease III, putative [Talaromyces stipitatus ATCC 10500] Length = 129 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 23/127 (18%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ I Y F +R+LL +AL +Q +RL LGD+++ L++ + S + Sbjct: 6 LERIIDYTFKDRNLLNEAL--------HQTQNKRLALLGDKVVALMLIDSWYQTGGSCYD 57 Query: 69 GELSVRFNSLV----SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G NSL+ S E + A + L +R S T E+++ Sbjct: 58 G------NSLLQHAASNEAMANRAIQTHLKDMVRRQSHQSPSTHGLATDF-----EAVVG 106 Query: 125 ALYLDGG 131 A+++D G Sbjct: 107 AVWIDCG 113 >gi|298204936|emb|CBI34243.3| unnamed protein product [Vitis vinifera] Length = 551 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K LQE AH + G+ T RSGP H P F+ VEI+G++ Sbjct: 89 KNLLQETAH-RAGLNLPVYTTIRSGPGHVPVFSCTVEIAGMS 129 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K +LQE A P Y R GPDH PRF V +G CS + AAA Sbjct: 3 KNQLQELAQRSCFNLPSYSC-IREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAAA 61 Query: 218 EV 219 EV Sbjct: 62 EV 63 >gi|126307762|ref|XP_001373191.1| PREDICTED: similar to adenosine deaminase, RNA-specific [Monodelphis domestica] Length = 1131 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K G T E+ + + GP HDP+F V++ M SK+AA+Q+AA +K Sbjct: 558 KNGSTCEFLLISQEGPAHDPKFKYCVKMGSQTFPTMMANSKKAAKQMAAEVAVK 611 >gi|238575785|ref|XP_002387790.1| hypothetical protein MPER_13270 [Moniliophthora perniciosa FA553] gi|215448580|gb|EEB88720.1| hypothetical protein MPER_13270 [Moniliophthora perniciosa FA553] Length = 361 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 175 YKVTF---RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 Y VT+ + GP HDP +TVV E++G +G S + A AA + + W Sbjct: 304 YTVTYAASKEGPPHDPVWTVVYELNGQTQGKGTGRSMQIATHAAATDAWLNKRNW 358 >gi|157959950|ref|YP_001499984.1| hypothetical protein Spea_0120 [Shewanella pealeana ATCC 700345] gi|157844950|gb|ABV85449.1| protein of unknown function DUF692 [Shewanella pealeana ATCC 700345] Length = 290 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 18/121 (14%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F LL T ++ H Q + +FLG+RIL +ST +S R N Sbjct: 108 FKVADLLPLPYTQEAVMHISQRIKQTQDFLGERILLENVSTY------------MSCRHN 155 Query: 77 SLVSAETCSQVARE------LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L E + +A E LD+ + S +L + + SFM +I + V+ + A + D Sbjct: 156 ELSEGEFIAAIAEEADCYLLLDINNAFVTSVNLNQSMQSFMDAIPVERVKQIHLAGFHDK 215 Query: 131 G 131 G Sbjct: 216 G 216 >gi|12711291|emb|CAA67170.1| dsRNA adenosine deaminase [Homo sapiens] Length = 1221 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 612 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 670 Query: 219 VLK 221 +K Sbjct: 671 AMK 673 >gi|225451189|ref|XP_002271134.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 543 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K LQE AH + G+ T RSGP H P F+ VEI+G++ Sbjct: 89 KNLLQETAH-RAGLNLPVYTTIRSGPGHVPVFSCTVEIAGMS 129 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K +LQE A P Y R GPDH PRF V +G CS + AAA Sbjct: 3 KNQLQELAQRSCFNLPSYSC-IREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAAA 61 Query: 218 EV 219 EV Sbjct: 62 EV 63 >gi|2795789|gb|AAB97116.1| RNA adenosine deaminase [Homo sapiens] Length = 1200 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675 Query: 219 VLK 221 +K Sbjct: 676 AMK 678 >gi|70167032|ref|NP_056656.2| double-stranded RNA-specific adenosine deaminase isoform c [Homo sapiens] gi|119573570|gb|EAW53185.1| adenosine deaminase, RNA-specific, isoform CRA_c [Homo sapiens] Length = 1181 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675 Query: 219 VLK 221 +K Sbjct: 676 AMK 678 >gi|2795790|gb|AAB97117.1| RNA adenosine deaminase [Homo sapiens] Length = 1181 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675 Query: 219 VLK 221 +K Sbjct: 676 AMK 678 >gi|915284|gb|AAC13782.1| p136 [Homo sapiens] gi|2795791|gb|AAB97118.1| RNA adenosine deaminase [Homo sapiens] Length = 1226 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675 Query: 219 VLK 221 +K Sbjct: 676 AMK 678 >gi|313104303|sp|P55265|DSRAD_HUMAN RecName: Full=Double-stranded RNA-specific adenosine deaminase; Short=DRADA; AltName: Full=136 kDa double-stranded RNA-binding protein; Short=p136; AltName: Full=Interferon-inducible protein 4; Short=IFI-4; AltName: Full=K88DSRBP gi|55666219|emb|CAH71908.1| adenosine deaminase, RNA-specific [Homo sapiens] gi|55960913|emb|CAI16185.1| adenosine deaminase, RNA-specific [Homo sapiens] gi|55961273|emb|CAI17376.1| adenosine deaminase, RNA-specific [Homo sapiens] Length = 1226 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675 Query: 219 VLK 221 +K Sbjct: 676 AMK 678 >gi|70166852|ref|NP_001102.2| double-stranded RNA-specific adenosine deaminase isoform a [Homo sapiens] gi|577170|gb|AAB06697.1| double-stranded RNA adenosine deaminase [Homo sapiens] gi|23398522|gb|AAH38227.1| Adenosine deaminase, RNA-specific [Homo sapiens] gi|119573571|gb|EAW53186.1| adenosine deaminase, RNA-specific, isoform CRA_d [Homo sapiens] gi|157928608|gb|ABW03600.1| adenosine deaminase, RNA-specific [synthetic construct] gi|157929250|gb|ABW03910.1| adenosine deaminase, RNA-specific [synthetic construct] Length = 1226 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675 Query: 219 VLK 221 +K Sbjct: 676 AMK 678 >gi|126341352|ref|XP_001373773.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 727 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 16/92 (17%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189 ++R L+ G K +L W + VTP +YK+ ++GP H P F Sbjct: 80 RKRPLEEGNSGHFCKLQLI-WKKLSWSVTPKNALVQLHELKPGLQYKMVSQTGPVHAPVF 138 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V VE++G +G +K+ A+ AA LK Sbjct: 139 AVAVEVNGFT-FEGTGPTKKKAKMRAAELALK 169 >gi|70166944|ref|NP_056655.2| double-stranded RNA-specific adenosine deaminase isoform b [Homo sapiens] gi|119573575|gb|EAW53190.1| adenosine deaminase, RNA-specific, isoform CRA_f [Homo sapiens] Length = 1200 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675 Query: 219 VLK 221 +K Sbjct: 676 AMK 678 >gi|194227228|ref|XP_001917073.1| PREDICTED: similar to Double-stranded RNA-specific editase B2 (dsRNA adenosine deaminase B2) (RNA-dependent adenosine deaminase 3) (RNA-editing deaminase 2) (RNA-editing enzyme 2) [Equus caballus] Length = 732 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 16/92 (17%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189 K+R L+ G K +L W + VTP +Y++ ++GP H P F Sbjct: 97 KKRPLEEGNGSHLCKLQLI-WKKLSWSVTPKNALVQLHELRPGLQYRMVSQTGPVHAPVF 155 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V VE++GL +G +K+ A+ AA L+ Sbjct: 156 AVAVEVNGLT-FEGTGPTKKKAKMRAAELALR 186 >gi|115463113|ref|NP_001055156.1| Os05g0307400 [Oryza sativa Japonica Group] gi|122169278|sp|Q0DJA3|DRB3_ORYSJ RecName: Full=Double-stranded RNA-binding protein 3; AltName: Full=dsRNA-binding protein 3 gi|113578707|dbj|BAF17070.1| Os05g0307400 [Oryza sativa Japonica Group] gi|215704133|dbj|BAG92973.1| unnamed protein product [Oryza sativa Japonica Group] Length = 437 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215 K+ LQE+A TPEY T + GP H+P F TVV+ + G +++AAEQ A Sbjct: 37 KSRLQEYAQKAGLQTPEYH-TSKEGPSHEPVFKSTVVINNTSYGSLPGFS-NRKAAEQSA 94 Query: 216 A 216 A Sbjct: 95 A 95 >gi|291409122|ref|XP_002720862.1| PREDICTED: adenosine deaminase, RNA-specific, B2-like [Oryctolagus cuniculus] Length = 734 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 16/92 (17%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189 ++R L+ G K +L W + VTP +Y++ ++GP H P F Sbjct: 87 RKRPLEEGNGGHLCKLQLI-WKKLSWSVTPKNALVQLHELKPGLQYRMVSQTGPVHAPVF 145 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V VE++GL +G +K+ A+ AA LK Sbjct: 146 AVAVEVNGLT-FEGTGPTKKKAKMRAAELALK 176 >gi|6730350|pdb|1DI2|A Chain A, Crystal Structure Of A Dsrna-Binding Domain Complexed With Dsrna: Molecular Basis Of Double-Stranded Rna-Protein Interactions gi|6730351|pdb|1DI2|B Chain B, Crystal Structure Of A Dsrna-Binding Domain Complexed With Dsrna: Molecular Basis Of Double-Stranded Rna-Protein Interactions Length = 69 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE A K PEY V SGP H FT+ + G SK+ A++VAA ++L Sbjct: 6 LQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFV-ETGSGTSKQVAKRVAAEKLL 64 Query: 221 KR 222 + Sbjct: 65 TK 66 >gi|2326526|emb|CAA55968.1| IFI-4 [Homo sapiens] Length = 1226 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675 Query: 219 VLK 221 +K Sbjct: 676 AMK 678 >gi|297663362|ref|XP_002810144.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 3 [Pongo abelii] Length = 1181 Score = 35.8 bits (81), Expect = 4.2, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675 Query: 219 VLK 221 +K Sbjct: 676 AMK 678 >gi|297663358|ref|XP_002810142.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 1 [Pongo abelii] Length = 1226 Score = 35.8 bits (81), Expect = 4.2, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675 Query: 219 VLK 221 +K Sbjct: 676 AMK 678 >gi|297663360|ref|XP_002810143.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 2 [Pongo abelii] Length = 1200 Score = 35.8 bits (81), Expect = 4.2, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675 Query: 219 VLK 221 +K Sbjct: 676 AMK 678 >gi|242084480|ref|XP_002442665.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor] gi|241943358|gb|EES16503.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor] Length = 394 Score = 35.8 bits (81), Expect = 4.2, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215 K+ LQE+A TPEY T + GP H+P F TV+V + G S++AAEQ A Sbjct: 39 KSRLQEYAQKAGLPTPEYH-TLKEGPSHEPVFKSTVLVNNTTYESLPGF-FSRKAAEQSA 96 Query: 216 A 216 A Sbjct: 97 A 97 >gi|297280145|ref|XP_001111902.2| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 1 [Macaca mulatta] Length = 1199 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 616 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 674 Query: 219 VLK 221 +K Sbjct: 675 AMK 677 >gi|50548505|ref|XP_501722.1| YALI0C11429p [Yarrowia lipolytica] gi|49647589|emb|CAG82032.1| YALI0C11429p [Yarrowia lipolytica] Length = 467 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 10/97 (10%) Query: 17 FANRSLL----------EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 F +RS+L K T + + SYERLEF+GD I+ +++ ++++ F Sbjct: 157 FTHRSMLLGDTGTASEVHKTATKAGYDQTGNFSYERLEFVGDSIVNNILTKIIYDVFPGD 216 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 + LS +++ + A S +RV+S + Sbjct: 217 DQSHLSFLRGQVIANIVLCRWAAIYGFPSKLRVASSV 253 >gi|242760076|ref|XP_002339915.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500] gi|218723111|gb|EED22528.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500] Length = 129 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 8/49 (16%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55 +++E IGY F +R LL KAL +Q +RL LGD+++ L++ Sbjct: 4 NSVEGIIGYTFNDRELLAKAL--------HQTQNKRLALLGDKVVALVL 44 >gi|297280147|ref|XP_002801844.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 3 [Macaca mulatta] Length = 1180 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 616 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 674 Query: 219 VLK 221 +K Sbjct: 675 AMK 677 >gi|297280143|ref|XP_002801843.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 2 [Macaca mulatta] Length = 1225 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 616 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 674 Query: 219 VLK 221 +K Sbjct: 675 AMK 677 >gi|255569488|ref|XP_002525711.1| hypothetical protein RCOM_1321840 [Ricinus communis] gi|223535011|gb|EEF36694.1| hypothetical protein RCOM_1321840 [Ricinus communis] Length = 162 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 KT+LQE H K PEY T + G DH+P F V ++G Sbjct: 3 KTKLQELCHQKTWSLPEYSTT-KVGQDHNPIFHATVIVNG 41 >gi|332220545|ref|XP_003259416.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform 3 [Nomascus leucogenys] Length = 1234 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 670 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 728 Query: 219 VLK 221 +K Sbjct: 729 AMK 731 >gi|332220543|ref|XP_003259415.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform 2 [Nomascus leucogenys] Length = 1253 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 670 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 728 Query: 219 VLK 221 +K Sbjct: 729 AMK 731 >gi|224613107|dbj|BAH24216.1| dsRNA-specific ribonuclease RNaseIII [Onion yellows phytoplasma] Length = 149 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 4/93 (4%) Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 SI AD E+L A+YLD G A K+ + D KT+LQE ++ T Sbjct: 23 SIMADTFEALFGAIYLDLGYLTAKKVFHNIVLPHLAKT-IYIIDFKTQLQEIVQSE-KKT 80 Query: 173 PEYKVTFRSGPDHDPRFT--VVVEISGLAPAQG 203 +YK+ GP H F V +E + L +G Sbjct: 81 IQYKIVQEQGPAHSKNFVAEVYLEKNLLGTGEG 113 >gi|332220541|ref|XP_003259414.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform 1 [Nomascus leucogenys] Length = 1279 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 670 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 728 Query: 219 VLK 221 +K Sbjct: 729 AMK 731 >gi|326507276|dbj|BAJ95715.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 580 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 K LQE AH P Y T RSGP H P FT VE++G Sbjct: 89 KNLLQETAHRAGLKLPMY-TTIRSGPGHTPTFTCTVELAG 127 >gi|62089368|dbj|BAD93128.1| adenosine deaminase, RNA-specific isoform ADAR-a variant [Homo sapiens] Length = 1244 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 635 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 693 Query: 219 VLK 221 +K Sbjct: 694 AMK 696 >gi|31874703|emb|CAD98075.1| hypothetical protein [Homo sapiens] Length = 1257 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 648 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 706 Query: 219 VLK 221 +K Sbjct: 707 AMK 709 >gi|34364836|emb|CAE45853.1| hypothetical protein [Homo sapiens] Length = 1278 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 648 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 706 Query: 219 VLK 221 +K Sbjct: 707 AMK 709 >gi|321468964|gb|EFX79946.1| hypothetical protein DAPPUDRAFT_318955 [Daphnia pulex] Length = 311 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 4/58 (6%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 T ++++ ++ +RLE LGD +LGLL+S L+ F K G+L +R SA TC+ Sbjct: 98 TTANLTSCTVKNGDRLEVLGDAVLGLLVSIGLYRTFTKYKPGDL-IRHR---SALTCN 151 >gi|156540328|ref|XP_001599266.1| PREDICTED: similar to adenosine deaminase, partial [Nasonia vitripennis] Length = 429 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 K K A+ + K ++ + + A + YKV ++GP H P FT+ V+I G + Sbjct: 150 KLLKTGAINAKKKHKNTQPKNAVCALNELKAGATYKVVSQTGPTHAPIFTIAVQIDGQS- 208 Query: 201 AQGMDCSKRAAEQVAAAEVLKR 222 +G +K+ A+ AA L+ Sbjct: 209 YEGKGRTKKMAKHAAAELALRN 230 >gi|327291984|ref|XP_003230700.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like, partial [Anolis carolinensis] Length = 404 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A K G E+++ + GP HDP+F V+I + SK+ A+Q+ Sbjct: 82 KNPVSALMEYAQ-KSGSVCEFQLLAQDGPPHDPKFKYCVKIGDQVFPAVVSNSKKGAKQM 140 Query: 215 AAAEVLK 221 AA ++ Sbjct: 141 AAEAAIR 147 >gi|321457253|gb|EFX68343.1| hypothetical protein DAPPUDRAFT_114652 [Daphnia pulex] Length = 201 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L EW PEY+V +SGP H + + ++S +G+ SK+AA+ AA ++L Sbjct: 135 LLEWRQTTHRPLPEYRVVRKSGPSHSKTYFMTCKLSERV-TEGVGKSKKAAKNDAAEKML 193 Query: 221 K 221 + Sbjct: 194 Q 194 >gi|221044884|dbj|BAH14119.1| unnamed protein product [Homo sapiens] Length = 970 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+AA E Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675 Query: 219 VLK 221 +K Sbjct: 676 AMK 678 >gi|2415555|emb|CAA04303.1| ribonuclease III [Campylobacter jejuni] Length = 73 Score = 35.4 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 YAF + + ALTH S SY ERL +GD +L L++ LF++ Sbjct: 1 YAFPDTNHFIPALTHKSFKKSYNN--ERLVLIGDAVLDLVVGEYLFHN 46 >gi|269966648|ref|ZP_06180727.1| hypothetical protein VMC_21570 [Vibrio alginolyticus 40B] gi|269828715|gb|EEZ82970.1| hypothetical protein VMC_21570 [Vibrio alginolyticus 40B] Length = 445 Score = 35.4 bits (80), Expect = 5.3, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 7/86 (8%) Query: 143 WKQRALKSGKFRRDAKTE------LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 W + ++ R DA E LQE+A ++ P+Y V SGP H+ F+V I Sbjct: 92 WLYKLAQTLDIRLDASNEKPMKMVLQEYAQSRKLQAPQYDVVEISGPQHNQVFSVQCSIV 151 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKR 222 A G SK+ A + AA ++ ++ Sbjct: 152 N-EKAVGSGNSKKKASEDAAIKLYQK 176 >gi|255542426|ref|XP_002512276.1| hypothetical protein RCOM_1429110 [Ricinus communis] gi|223548237|gb|EEF49728.1| hypothetical protein RCOM_1429110 [Ricinus communis] Length = 568 Score = 35.4 bits (80), Expect = 5.4, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K +LQE A P Y R GPDH PRF V +G CS + AAA Sbjct: 3 KNQLQELAQRSCFNLPSYSC-IREGPDHAPRFKATVNFNGETFESPAFCSTLRQAEHAAA 61 Query: 218 EV 219 EV Sbjct: 62 EV 63 Score = 34.7 bits (78), Expect = 9.7, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA----PAQGMDCSKRAAEQ 213 K LQE AH P Y T RSGP H P F+ VE++G++ PA+ +++ A Sbjct: 89 KNLLQETAHRAGLKLPVY-TTVRSGPGHVPVFSCTVELAGMSFTGEPARTKKQAQKNAA- 146 Query: 214 VAAAEVLKR 222 +AA LKR Sbjct: 147 MAAWSALKR 155 >gi|317418804|emb|CBN80842.1| RISC-loading complex subunit tarbp2 [Dicentrarchus labrax] Length = 345 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE K PEY VT SGP H FT+ + G SK+ A++ AAA++L Sbjct: 145 LQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFVEI-GSGTSKKLAKRNAAAKML 203 Query: 221 KR 222 R Sbjct: 204 SR 205 >gi|321451362|gb|EFX63042.1| hypothetical protein DAPPUDRAFT_336024 [Daphnia pulex] Length = 270 Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 5/112 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +SA++ E+ + Y+F ++ +L +ALT+ + S +Y+RLE +GD G L + F Sbjct: 97 LSAVK--AFEEILNYSFNDKEVLLEALTYGNSIRSL--NYQRLEVIGDAAFGFLAALNFF 152 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111 G++S ++ V +T +A + + ++I+ + +L K + F+ Sbjct: 153 KQSLYHSAGDISQLRSACVCNDTFGMLAAKRNFHAYIQNLPPNLVKHLEDFL 204 >gi|224130800|ref|XP_002328379.1| predicted protein [Populus trichocarpa] gi|222838094|gb|EEE76459.1| predicted protein [Populus trichocarpa] Length = 159 Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y T RSGP H P F+ VE++G++ +K+ A++ AA Sbjct: 89 KNLLQETAHRAGLKLPVY-TTIRSGPGHVPVFSCNVELAGMSFTGESARTKKQAQKNAA 146 >gi|325284065|ref|YP_004256606.1| double-stranded RNA binding domain-containing protein [Deinococcus proteolyticus MRP] gi|324315874|gb|ADY26989.1| double-stranded RNA binding domain protein [Deinococcus proteolyticus MRP] Length = 169 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 A G++PE++V SGP H PRF V G QG S+R AE+ AA + L+ Sbjct: 14 AAQGLSPEFRVDG-SGPAHAPRFVAEVWCDGQRLGQGEGRSRREAERGAAVQALE 67 >gi|18959240|ref|NP_579836.1| double-stranded RNA-specific editase B2 [Rattus norvegicus] gi|33112433|sp|P97616|RED2_RAT RecName: Full=Double-stranded RNA-specific editase B2; AltName: Full=RNA-dependent adenosine deaminase 3; AltName: Full=RNA-editing deaminase 2; AltName: Full=RNA-editing enzyme 2; AltName: Full=dsRNA adenosine deaminase B2 gi|1814270|gb|AAB41862.1| double-stranded RNA specific adenosine deaminase [Rattus norvegicus] Length = 746 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 16/92 (17%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189 ++R L+ G K +L W + +TP +Y++ ++GP H P F Sbjct: 99 RKRPLEEGNGGHFCKLQLI-WKKLSWSMTPKNALVQLHELKPGLQYRMVSQTGPVHAPVF 157 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V VE++GL +G +K+ A+ AA LK Sbjct: 158 AVAVEVNGLT-FEGTGPTKKKAKMRAAEMALK 188 >gi|328852770|gb|EGG01913.1| hypothetical protein MELLADRAFT_66687 [Melampsora larici-populina 98AG31] Length = 460 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 13/121 (10%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 ++++ Y F N +LL KALT + H + LE++GD +L + + + H K Sbjct: 333 QEKLNYRFRNPNLLRKALT---LDHP---EFRLLEWIGDSVLDVWAAMEITKHRKGHKVS 386 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ-ADVVESLIAALYL 128 + + RF L + E Q + SF + ++K F+ + VE+LI A++L Sbjct: 387 KANERFMDLTNNEFLGQRVTD----SFKSLKHIIQKP--RFLGKLWLGKFVEALIGAVFL 440 Query: 129 D 129 D Sbjct: 441 D 441 >gi|242069683|ref|XP_002450118.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor] gi|241935961|gb|EES09106.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor] Length = 118 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215 K+ LQE+A K G+T T + GP H+P F TVVV + G S++AAEQ A Sbjct: 34 KSRLQEYAQ-KVGITTLEYHTLKEGPSHEPVFKSTVVVNNTRYESLPGF-FSRKAAEQSA 91 Query: 216 A 216 A Sbjct: 92 A 92 >gi|321451683|gb|EFX63253.1| hypothetical protein DAPPUDRAFT_335709 [Daphnia pulex] gi|321454090|gb|EFX65276.1| hypothetical protein DAPPUDRAFT_333337 [Daphnia pulex] Length = 121 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 25/40 (62%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGD 48 LE I Y F N+ +L +A TH + + SYE+LE+LG+ Sbjct: 23 LEIIINYKFNNQLILLEASTHGTFHNPLCSSYEKLEYLGE 62 >gi|255946916|ref|XP_002564225.1| Pc22g01810 [Penicillium chrysogenum Wisconsin 54-1255] gi|211591242|emb|CAP97469.1| Pc22g01810 [Penicillium chrysogenum Wisconsin 54-1255] Length = 151 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 8/128 (6%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LEK+I Y F +R LL +AL S + Q+ + L GD +L L+++ + ++ Sbjct: 17 VLEKKIQYRFVDRELLREALQAS--TDRNQDGNKTLALFGDLVLDLVLA--ISGRKENKP 72 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G++ S+ +L + FI + + V ++ A +E+++ A+Y Sbjct: 73 RGKIKEMSTQKAGNVHLSKQGFDLGIDKFI--VKNPSQTVVGI--NVMATTMEAIVGAVY 128 Query: 128 LDGGIEVA 135 LD ++A Sbjct: 129 LDCNKQIA 136 >gi|149031451|gb|EDL86441.1| adenosine deaminase, RNA-specific, B2 [Rattus norvegicus] Length = 746 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 16/92 (17%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189 ++R L+ G K +L W + +TP +Y++ ++GP H P F Sbjct: 99 RKRPLEEGNGGHFCKLQLI-WKKLSWSMTPKNALVQLHELKPGLQYRMVSQTGPVHAPVF 157 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V VE++GL +G +K+ A+ AA LK Sbjct: 158 AVAVEVNGLT-FEGTGPTKKKAKMRAAEMALK 188 >gi|1932815|gb|AAB51688.1| dsRNA adenosine deaminase [Xenopus laevis] Length = 1124 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 28/49 (57%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K G E+++ + GP HDP+FT V+I + SK+ A+Q+AA Sbjct: 544 KSGSMCEFQLVQQEGPPHDPKFTYTVKIGNQTFPPVVANSKKMAKQLAA 592 >gi|297736909|emb|CBI26110.3| unnamed protein product [Vitis vinifera] Length = 826 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K +LQE A P Y R GPDH PRF V +G C+ + AAA Sbjct: 3 KNQLQELAQRSCFNLPSY-ACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAAA 61 Query: 218 EV 219 EV Sbjct: 62 EV 63 >gi|281353109|gb|EFB28693.1| hypothetical protein PANDA_013628 [Ailuropoda melanoleuca] Length = 637 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 16/92 (17%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189 ++R L+ G K +L W + VTP +Y++ ++GP H P F Sbjct: 35 RKRPLEEGNGSHLCKLQLV-WKKLSWSVTPKNALVQLHDLRPGLQYRMVSQTGPVHAPVF 93 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V VE++GL +G +K+ A+ AA L+ Sbjct: 94 AVAVEVNGLT-FEGTGPTKKKAKMRAAELALR 124 >gi|18858253|ref|NP_571671.1| double-stranded RNA-specific adenosine deaminase [Danio rerio] gi|7770273|gb|AAF69672.1| double-stranded RNA-specific editase [Danio rerio] Length = 1382 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 10/92 (10%) Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA 165 D+ F+ +I+++V SL A +E ++ K + +S ++ + L E+A Sbjct: 587 DIPEFLNTIRSEVAVSLAAPPPPTQSMES-----NRLQKLKEARS----KNPVSGLMEFA 637 Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 G T E+ + +SGP HDPRF + V + G Sbjct: 638 Q-HLGYTCEFLLLEQSGPSHDPRFRMQVMLDG 668 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 ++ GT R+L GK + + L E + + G ++ T + GP HDPRF Sbjct: 723 DMGGTDTPPQALSRSLPGGK---NPVSVLMEHSQ-RSGHPIQFIKTGQEGPSHDPRFMFR 778 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V++ + SK+AA Q+AA E +K Sbjct: 779 VKVGERLFQEASAPSKKAARQLAAEEAVK 807 >gi|321468344|gb|EFX79329.1| hypothetical protein DAPPUDRAFT_244966 [Daphnia pulex] Length = 96 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L EW + PEY+V SGP H + + ++S +G SK+AA+ AA ++L Sbjct: 30 LSEWRFTRHSSLPEYRVVRTSGPSHSKTYFMTCKLSDRV-TEGEGKSKKAAKNDAAQKML 88 Query: 221 K 221 + Sbjct: 89 Q 89 >gi|301628882|ref|XP_002943575.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific adenosine deaminase-like [Xenopus (Silurana) tropicalis] Length = 1170 Score = 35.0 bits (79), Expect = 7.0, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 28/50 (56%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +K G E+++ + GP HDP+FT V I + SK+ A+Q+AA Sbjct: 587 SKSGSMCEFQLVSQEGPPHDPKFTYTVRIGNQTFPPVVANSKKMAKQLAA 636 >gi|330467614|ref|YP_004405357.1| GntR family regulator [Verrucosispora maris AB-18-032] gi|328810585|gb|AEB44757.1| GntR family regulator [Verrucosispora maris AB-18-032] Length = 255 Score = 35.0 bits (79), Expect = 7.1, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 15/145 (10%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 R LLE + H + + QE+ +RL L DR+ L+ + ++ D A F+ Sbjct: 117 VVTRRLLESDMAHVAARLAGQETLDRLRALVDRMDELVDDQVAYHDHDRA--------FH 168 Query: 77 SLVSAETCSQVAR------ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 ++ + +++AR E + + R ++ +C + E IAA DG Sbjct: 169 DVIMQASGNRIARGVVRSLESQVVNTARYMGRTQRSLCVASNRGHRRIYER-IAARDPDG 227 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRR 155 E T + + W R SGK R Sbjct: 228 AAEAMFTHITEAWLVRRKGSGKVPR 252 >gi|325181016|emb|CCA15426.1| AlNc14C11G1368 [Albugo laibachii Nc14] Length = 841 Score = 35.0 bits (79), Expect = 7.1, Method: Compositional matrix adjust. Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 1/101 (0%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S +RL FLG+ L L + L + + + S+V ET + + + L S ++ Sbjct: 453 SQDRLAFLGNHALKFLAAFSLSFKIADGSDNPME-QAPSVVLDETVRDITQSVGLDSLLQ 511 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 + +L S+ + + +L+ A+YL GIE TF+ Sbjct: 512 CAFNLSTLKSDVKQSMFENCIRALVGAIYLASGIEACQTFL 552 >gi|145300633|ref|YP_001143474.1| 2',3'-cyclic-nucleotide 2'-phosphodiesterase [Aeromonas salmonicida subsp. salmonicida A449] gi|142853405|gb|ABO91726.1| 2',3'-cyclic-nucleotide 2'-phosphodiesterase [Aeromonas salmonicida subsp. salmonicida A449] Length = 659 Score = 35.0 bits (79), Expect = 7.1, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%) Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 Y ++G F+RDAK ++ +W+ KF TP + + D TV V I GL P Sbjct: 146 YVNANVFEAGAFKRDAKGQI-DWSGNKF--TPYLLLERKVKDDKGQEQTVKVGILGLTPP 202 Query: 202 QGMDCSKRAAE-QVAAAEVLK 221 Q + KR E +V A++++ Sbjct: 203 QVLQWDKRHLEGKVVVADMVE 223 >gi|70986266|ref|XP_748627.1| RNAse III [Aspergillus fumigatus Af293] gi|66846256|gb|EAL86589.1| RNAse III, putative [Aspergillus fumigatus Af293] gi|159128228|gb|EDP53343.1| RNAse III, putative [Aspergillus fumigatus A1163] Length = 150 Score = 35.0 bits (79), Expect = 7.2, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 15/137 (10%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI------SHSYQESYERLEFLGDRILGLLISTL 58 R +E I Y F NRS+L +AL + +H + + L +GD +L L+ L Sbjct: 6 RADVVEDIIHYDFTNRSILYEALRSAGALALTGRAHR-SDGNKDLAQVGDAVLQLI---L 61 Query: 59 LFNHFDS-AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 + + +++ G ++ +S S +QV + L S I ++ S + A Sbjct: 62 VMDGYEAKGSRGYINQIVSSTASNPNLAQVGFKAGLESVILIN----PSQASVSPGVMAQ 117 Query: 118 VVESLIAALYLDGGIEV 134 VE+++ A+YLD ++V Sbjct: 118 TVEAILGAVYLDSQMDV 134 >gi|255545990|ref|XP_002514055.1| conserved hypothetical protein [Ricinus communis] gi|223547141|gb|EEF48638.1| conserved hypothetical protein [Ricinus communis] Length = 361 Score = 35.0 bits (79), Expect = 7.3, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 3/38 (7%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVV 193 K+ LQE+A K TP Y+ T + GP H+P F TV+V Sbjct: 18 KSRLQEYAQKKGLPTPVYE-TIKEGPSHEPSFRSTVIV 54 >gi|224613100|dbj|BAH24210.1| dsRNA-specific ribonuclease RNaseIII [Onion yellows phytoplasma] Length = 157 Score = 35.0 bits (79), Expect = 7.6, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 4/93 (4%) Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 SI AD E+L A+YLD G A K+ + D KT+LQE ++ T Sbjct: 31 SIIADTFEALFGAIYLDLGYLTAKKVFHNIVLPHLAKT-IYIIDFKTQLQEIVQSE-KKT 88 Query: 173 PEYKVTFRSGPDHDPRFT--VVVEISGLAPAQG 203 +YK+ GP H F V +E + L +G Sbjct: 89 IQYKIVQEQGPAHSKNFVAEVYLEKNLLGTGEG 121 >gi|82268346|sp|Q4SS66|TRBP2_TETNG RecName: Full=RISC-loading complex subunit tarbp2 gi|47222849|emb|CAF96516.1| unnamed protein product [Tetraodon nigroviridis] Length = 345 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE K PEY VT SGP H FT+ + G SK+ A++ AAA++L Sbjct: 145 LQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEI-GSGTSKKLAKRNAAAKML 203 Query: 221 KR 222 R Sbjct: 204 SR 205 >gi|255954591|ref|XP_002568048.1| Pc21g10130 [Penicillium chrysogenum Wisconsin 54-1255] gi|211589759|emb|CAP95910.1| Pc21g10130 [Penicillium chrysogenum Wisconsin 54-1255] Length = 208 Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 24/42 (57%) Query: 94 ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 A IR +L + T + ADVVESLI A Y+DGGI A Sbjct: 95 ALLIRNKLELSTAKRNISTKVLADVVESLIGAAYVDGGIREA 136 >gi|330982803|gb|EGH80906.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 77 Score = 35.0 bits (79), Expect = 8.4, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 +D KT LQE+ ++ P Y+V G H F V EI+ L ++G S+R AEQ Sbjct: 1 KDPKTRLQEFLQSRACELPRYEVVDIQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 60 Query: 214 VAAAEVLKREGI 225 VAAA L G+ Sbjct: 61 VAAAAALIALGV 72 >gi|90704799|dbj|BAE92294.1| similarity to ribonuclease III [Cryptomeria japonica] Length = 191 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 10/152 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ +I Y F +++LL A+TH+S S ++ L LG I+ IS + + Sbjct: 42 LQTKIRYQFKDQTLLILAITHASYSF---DNNGALNVLGYNIIQAAISLHYVLNNSAIGS 98 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L + + L + S+ A +L L I+V+ + SI +L A+ Sbjct: 99 GDLHSKISELSNCTVLSKDAFDLQLHDLIKVAPKINPK----KQSILCGCYRALFGAIGA 154 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 D ++VA +K+ +R L + + T+ Sbjct: 155 DANLDVAK---EKFLIRRKLNAASIMQKHLTQ 183 >gi|332030759|gb|EGI70435.1| Kinesin-like protein KIF20A [Acromyrmex echinatior] Length = 1468 Score = 35.0 bits (79), Expect = 8.9, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 6/86 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +Y TL K ++ L + T + Y++ R+E L DR+ ++T + N +D Sbjct: 1323 KYETLVKN------HQELFRRQFTPTPNKDDYKKLQNRIEVLQDRLQKYEVNTKVKNIYD 1376 Query: 65 SAKEGELSVRFNSLVSAETCSQVARE 90 S E E+S R +T S V +E Sbjct: 1377 STSEEEISARQTKRRGKKTASSVKQE 1402 Searching..................................................done Results from round 2 >gi|254780940|ref|YP_003065353.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62] gi|254040617|gb|ACT57413.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 323 bits (829), Expect = 1e-86, Method: Composition-based stats. Identities = 227/227 (100%), Positives = 227/227 (100%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF Sbjct: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE Sbjct: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR Sbjct: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT Sbjct: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 >gi|315122353|ref|YP_004062842.1| ribonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495755|gb|ADR52354.1| ribonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 232 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 169/225 (75%), Positives = 200/225 (88%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 +L+ S LE+RIGY F+N+ LL+KALTHSSI HS QE+YERLEFLGDR+LG+LIS LLF++ Sbjct: 8 SLKLSALERRIGYTFSNKYLLKKALTHSSICHSPQENYERLEFLGDRVLGILISKLLFDY 67 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 FDSAKEGELS+RFNSLVSAETCSQVA+EL+L SFI VSSDLR +VC F+ IQADVVESL Sbjct: 68 FDSAKEGELSIRFNSLVSAETCSQVAKELELDSFIYVSSDLRMEVCKFVKGIQADVVESL 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAALYLDGGIE A +FV KYWK+R LK+G+FRRDAKTELQEWAHAKF VTP YK+ RSG Sbjct: 128 IAALYLDGGIESASSFVTKYWKKRVLKNGEFRRDAKTELQEWAHAKFRVTPTYKIMLRSG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 PDHDPRFTV+V++ GL +G+DCSKR+AEQ+AAAE+L+REGIW+ Sbjct: 188 PDHDPRFTVMVDVLGLYSGKGIDCSKRSAEQMAAAEILRREGIWS 232 >gi|328543513|ref|YP_004303622.1| ribonuclease III [polymorphum gilvum SL003B-26A1] gi|326413257|gb|ADZ70320.1| Ribonuclease III [Polymorphum gilvum SL003B-26A1] Length = 234 Score = 286 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 111/223 (49%), Positives = 147/223 (65%), Gaps = 3/223 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFD 64 TLE R+GY+F +++LL +ALTH+S ++ + SY+RLEFLGDR+LGL ++T+L HF Sbjct: 11 TLEGRLGYSFQDKALLMQALTHASALNAGGAARGSYQRLEFLGDRVLGLAVATMLHRHFP 70 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EGEL+ R N +V ETC+ +A ELDL +R+S + T++ AD+ E++IA Sbjct: 71 LADEGELARRLNHMVKRETCADIALELDLGEAMRISQSEAQTGGRRKTALLADICEAVIA 130 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG A FV + W+ R L RDAKT LQEWA +K P Y+VT R GPD Sbjct: 131 AIYLDGGFPAAEDFVRRLWEPRMLAWSGPLRDAKTTLQEWAQSKGLPAPGYQVTTREGPD 190 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 H P F V V +SG AP +G SKR AEQ AA VL+REG+WT Sbjct: 191 HAPVFVVAVTVSGYAPGEGRGGSKRIAEQNAAEAVLRREGVWT 233 >gi|254469250|ref|ZP_05082655.1| ribonuclease III [Pseudovibrio sp. JE062] gi|211961085|gb|EEA96280.1| ribonuclease III [Pseudovibrio sp. JE062] Length = 235 Score = 284 bits (728), Expect = 6e-75, Method: Composition-based stats. Identities = 103/224 (45%), Positives = 145/224 (64%), Gaps = 3/224 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+RIGY F N+ LL +ALTH+S + + +SY+RLEFLGDR+LGL I+T+L +F Sbjct: 11 AALEERIGYKFTNKELLVRALTHASALPVAKASLQSYQRLEFLGDRVLGLAIATMLEENF 70 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGEL+ R N LV ETC++V++ + + +RV T+I AD+ ESLI Sbjct: 71 PKADEGELARRLNQLVKRETCAEVSKVIGIGQHMRVGEAEAHTGGRTKTAILADMCESLI 130 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AA+YLD G + A F+ +Y+ +R + RDAKT LQEWA +K TP+Y+ RSGP Sbjct: 131 AAIYLDSGFDEAENFIKRYFAERMVSYTGPLRDAKTTLQEWAQSKGRPTPQYETISRSGP 190 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 DH P F + V + G+ P + + SKR AEQ AA +L+REG+W+ Sbjct: 191 DHAPIFKIRVNVEGVDPGEAVGSSKRIAEQSAAENILRREGVWS 234 >gi|302391792|ref|YP_003827612.1| RNAse III [Acetohalobium arabaticum DSM 5501] gi|302203869|gb|ADL12547.1| RNAse III [Acetohalobium arabaticum DSM 5501] Length = 234 Score = 284 bits (727), Expect = 7e-75, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 123/227 (54%), Gaps = 6/227 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 + L+ +I FA+ LL++ALTH S ++ + + ERLEFLGD +L +++S Sbjct: 7 KEKLEELQSKIDIYFADLDLLQRALTHKSYANENRDLNLKDNERLEFLGDSVLDIVVSEY 66 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 +FN + EG+L+ S+VSA T + ARELDL ++ + +SI AD Sbjct: 67 MFNRYPDYPEGKLAKMRASVVSAPTLAAKARELDLGRYLLLGHGEEMTGGRKRSSILADA 126 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E+L+ ++YLD +++A F+ K K + ++G+ RD KT LQE + PEY Sbjct: 127 FEALVGSIYLDQDLDIAEDFIMKLMKVDIESAEAGEHIRDYKTTLQEMIQKRSNARPEYY 186 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V GPDH FTV V+ + + +G SK+ A+Q AA LK+ Sbjct: 187 VIEEKGPDHSKEFTVEVKFNDRSLGEGTGSSKKEAQQQAAKNALKKL 233 >gi|224582877|ref|YP_002636675.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467404|gb|ACN45234.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 245 Score = 284 bits (727), Expect = 7e-75, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 20 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 77 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ + P Y V Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G HD FT+ ++SGL P G S+R AEQ AA +VLK+ Sbjct: 197 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQVLKKL 242 >gi|62181146|ref|YP_217563.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128779|gb|AAX66482.1| RNase III, ds RNA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715636|gb|EFZ07207.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 245 Score = 284 bits (727), Expect = 7e-75, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 20 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD +E Sbjct: 77 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTME 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ + P Y V Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G HD FT+ ++SGL P G S+R AEQ AA +VLK+ Sbjct: 197 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQVLKKL 242 >gi|295696065|ref|YP_003589303.1| ribonuclease III [Bacillus tusciae DSM 2912] gi|295411667|gb|ADG06159.1| ribonuclease III [Bacillus tusciae DSM 2912] Length = 231 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 110/225 (48%), Gaps = 4/225 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLL 59 A ++ LE R+G F N SLL +A THSS + ++ E ERLEFLGD +L LL+S L Sbjct: 2 ATKWDELEARLGITFRNASLLRQAFTHSSYRNEHRGDVEDNERLEFLGDAVLELLVSEFL 61 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F + EGEL+ ++V + + A L L +IR+ S+ ADV Sbjct: 62 FRAYPRFPEGELTRMRAAIVCEPSLVRFATALGLDQYIRLGRGEEMSGGRRRPSLLADVY 121 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+LI A++LD G+E A F+ + + D KT LQE Y++T Sbjct: 122 EALIGAIFLDQGLEAAREFLQRMMFPALQREQAPILDDYKTMLQEHVQKVGLGPLTYRIT 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H F V I G A +G SK+ AEQ AA E L + Sbjct: 182 DERGPAHHREFVAQVWIGGQAYGEGSGRSKKEAEQHAAREALMKL 226 >gi|227821403|ref|YP_002825373.1| ribonuclease III [Sinorhizobium fredii NGR234] gi|259491961|sp|C3M8S4|RNC_RHISN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|227340402|gb|ACP24620.1| ribonuclease III [Sinorhizobium fredii NGR234] Length = 239 Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats. Identities = 131/226 (57%), Positives = 164/226 (72%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +SA + LE IGY FA + L++ALTHSS ++ +Y+RLEFLGDR+LGL ++ LLF Sbjct: 7 LSAEDRARLETAIGYQFAEKERLDRALTHSSARNARASNYQRLEFLGDRVLGLCVAELLF 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LVSAE+C++VA EL L +IR SD++K M +++ADVVE Sbjct: 67 QTFLDANEGELSVRLNQLVSAESCARVADELSLHEYIRTGSDVKKITGKHMMNVRADVVE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAA+YLDGG+E A FV ++W RA + RRDAKTELQEWAHAKFG P Y+ R Sbjct: 127 SLIAAIYLDGGLEAARRFVLRHWTDRAASADGARRDAKTELQEWAHAKFGAAPRYRTDDR 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDPRFTV VE+ G+AP G D SKR AEQ+AA +L+REG+W Sbjct: 187 SGPDHDPRFTVTVEVDGIAPETGTDRSKRGAEQIAAMRLLEREGVW 232 >gi|156975792|ref|YP_001446699.1| ribonuclease III [Vibrio harveyi ATCC BAA-1116] gi|269960405|ref|ZP_06174778.1| Ribonuclease 3 [Vibrio harveyi 1DA3] gi|189043375|sp|A7MZA8|RNC_VIBHB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|156527386|gb|ABU72472.1| hypothetical protein VIBHAR_03536 [Vibrio harveyi ATCC BAA-1116] gi|269834832|gb|EEZ88918.1| Ribonuclease 3 [Vibrio harveyi 1DA3] Length = 225 Score = 281 bits (719), Expect = 7e-74, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 121/226 (53%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ LE+++GY F + L+ ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIDKLERKLGYQFKDAGLINLALTHRSANSKH---NERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE DL ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD IE V ++ R A+K G ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDIEAVRGIVLSWYNSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FTV +++G+ P G S+R AEQ AA L++ Sbjct: 177 NIKGEAHNQEFTVECDVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222 >gi|91227852|ref|ZP_01262025.1| ribonuclease III [Vibrio alginolyticus 12G01] gi|269965785|ref|ZP_06179882.1| Ribonuclease 3 [Vibrio alginolyticus 40B] gi|91188362|gb|EAS74658.1| ribonuclease III [Vibrio alginolyticus 12G01] gi|269829653|gb|EEZ83890.1| Ribonuclease 3 [Vibrio alginolyticus 40B] Length = 225 Score = 281 bits (719), Expect = 7e-74, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 123/226 (54%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ LE+++GY F + L+ ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIDKLERKLGYQFQDAGLINLALTHRSANSKH---NERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE DL ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD +EV V +++ R A+K G ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDLEVVRGIVLSWYQSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222 >gi|90101642|sp|Q57LD0|RNC_SALCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 226 Score = 280 bits (718), Expect = 7e-74, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD +E Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTME 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G HD FT+ ++SGL P G S+R AEQ AA +VLK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQVLKKL 223 >gi|28899346|ref|NP_798951.1| ribonuclease III [Vibrio parahaemolyticus RIMD 2210633] gi|153839958|ref|ZP_01992625.1| ribonuclease III [Vibrio parahaemolyticus AQ3810] gi|260365941|ref|ZP_05778431.1| ribonuclease III [Vibrio parahaemolyticus K5030] gi|260878963|ref|ZP_05891318.1| ribonuclease III [Vibrio parahaemolyticus AN-5034] gi|260898320|ref|ZP_05906816.1| ribonuclease III [Vibrio parahaemolyticus Peru-466] gi|31076860|sp|Q87LN9|RNC_VIBPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28807582|dbj|BAC60835.1| ribonuclease III [Vibrio parahaemolyticus RIMD 2210633] gi|149746517|gb|EDM57506.1| ribonuclease III [Vibrio parahaemolyticus AQ3810] gi|308085245|gb|EFO34940.1| ribonuclease III [Vibrio parahaemolyticus Peru-466] gi|308090440|gb|EFO40135.1| ribonuclease III [Vibrio parahaemolyticus AN-5034] gi|308113210|gb|EFO50750.1| ribonuclease III [Vibrio parahaemolyticus K5030] gi|328474121|gb|EGF44926.1| ribonuclease III [Vibrio parahaemolyticus 10329] Length = 225 Score = 280 bits (718), Expect = 9e-74, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ LE+++GY F + L+ ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIDKLERKLGYQFKDAGLINLALTHRSANSKH---NERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE DL ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD IE + V ++ R A+K G ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDIEKVRSIVLSWYNSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222 >gi|254230524|ref|ZP_04923895.1| ribonuclease III [Vibrio sp. Ex25] gi|262393270|ref|YP_003285124.1| ribonuclease III [Vibrio sp. Ex25] gi|151936949|gb|EDN55836.1| ribonuclease III [Vibrio sp. Ex25] gi|262336864|gb|ACY50659.1| ribonuclease III [Vibrio sp. Ex25] Length = 225 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ LE+++GY F + L+ ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIDKLERKLGYQFQDAGLINLALTHRSANSKH---NERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE DL ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD +EV V ++ R A+K G ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDLEVVRGIVLSWYNSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222 >gi|160934422|ref|ZP_02081809.1| hypothetical protein CLOLEP_03295 [Clostridium leptum DSM 753] gi|156867095|gb|EDO60467.1| hypothetical protein CLOLEP_03295 [Clostridium leptum DSM 753] Length = 237 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 122/224 (54%), Gaps = 4/224 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 + LE+ +GYAF N LL+ ALTHSS ++ S ERLEFLGD +L +++S +F Sbjct: 13 DFRRLEENLGYAFQNPKLLKTALTHSSYANEAHNGTRSNERLEFLGDAVLSIVVSDYIFR 72 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGEL+ SLV ++ + +R L++ SF+R+S + + +SI AD E+ Sbjct: 73 NCPHLPEGELTKMRASLVCEKSLQRFSRVLEIGSFLRLSRGEQNSGGAERSSILADAFEA 132 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++AA+YLDGG+E A FV ++ K +D KT LQE Y + Sbjct: 133 VLAAIYLDGGMEKAREFVLRFTVPEMENPKPKAFKDYKTALQEIVQQNPEEKLNYVLVGE 192 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGPDH+ F V V ++ +G SK+ AEQ AA E L+ G Sbjct: 193 SGPDHNKHFVVEVHLNSNVIGKGGGRSKKEAEQQAAREALELMG 236 >gi|163802958|ref|ZP_02196845.1| ribonuclease III [Vibrio sp. AND4] gi|159173248|gb|EDP58076.1| ribonuclease III [Vibrio sp. AND4] Length = 226 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 121/226 (53%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ LE+++GY F + L+ ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIEKLERKLGYQFKDAGLINLALTHRSANSKH---NERLEFLGDSILSFVIADELY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE DL ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD IE V ++ R A+K G ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDIEAVRGIVLSWYHSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FTV +++G+ P G S+R AEQ AA L++ Sbjct: 177 NIKGEAHNQEFTVECDVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222 >gi|260899641|ref|ZP_05908036.1| ribonuclease III [Vibrio parahaemolyticus AQ4037] gi|308110559|gb|EFO48099.1| ribonuclease III [Vibrio parahaemolyticus AQ4037] Length = 225 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ LE+++GY F + L+ ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIDKLERKLGYQFKDAGLINLALTHRSANSKH---NERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE DL ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD IE + V ++ R A+K G ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDIEKVRSIVLSWYYSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222 >gi|291530279|emb|CBK95864.1| RNAse III [Eubacterium siraeum 70/3] Length = 226 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 118/224 (52%), Gaps = 3/224 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + LE+ IGY F N LL++ALTHSS ++ + S ERLEFLGD +L +++S LF + + Sbjct: 2 TELEQIIGYTFKNPELLKEALTHSSYTNGKHLRSNERLEFLGDSVLSIVVSEHLFENLTN 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ S+V AR++DL +I + SI AD E+LIAA Sbjct: 62 LPEGQLTKIRASVVCENALYPFARKIDLGKYIFLGKGEEHTGGRDRHSILADAFEALIAA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQRA-LKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGG E A F+ + L +GKF D KT LQE Y+++ SG Sbjct: 122 IYLDGGFEAARNFILPFIPPLDKLSTGKFLLGDYKTVLQEIIQQNPEERVTYEISDESGQ 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 H+ +FT V ++G G SK+ AEQ AA E + G T Sbjct: 182 AHNKQFTANVLLNGQIIGTGKGKSKKEAEQSAAKEAISLMGYET 225 >gi|291542641|emb|CBL15751.1| RNAse III [Ruminococcus bromii L2-63] Length = 225 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 L+KRIGY F N LL +ALTHSS ++ ++ + ERLEFLGD +L +++S +F H Sbjct: 2 EDLQKRIGYTFKNTDLLTEALTHSSYANEHKAKHIKYNERLEFLGDAVLSIVVSDYIFKH 61 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EGEL+ SLV +T + A++++L ++ +S R + + SI +D E+L Sbjct: 62 CPELPEGELTKLRASLVCEKTLFEFAKQIELGKYLVLSKGERNNGGAERPSILSDAFEAL 121 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181 IAA+Y+DGGI+ A + + S K + D KT LQE G EY + S Sbjct: 122 IAAIYIDGGIDPASKHILNFVIPAIKNSKKKKLNDYKTALQEIIQKNPGEQLEYVLVGES 181 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH+ F V V ++ +G SK+ AEQ AA E L+ G Sbjct: 182 GPDHNKHFVVEVHLNSNVIGKGGGRSKKEAEQQAAREALELMG 224 >gi|118587961|ref|ZP_01545371.1| Ribonuclease III [Stappia aggregata IAM 12614] gi|118439583|gb|EAV46214.1| Ribonuclease III [Stappia aggregata IAM 12614] Length = 236 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 108/224 (48%), Positives = 143/224 (63%), Gaps = 3/224 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNH 62 S L+ + Y F + LL ALTH+S S + SY+RLEFLGDR+LGL+I+++L H Sbjct: 11 ISALKNALQYEFRDLELLRVALTHASALPPSETVAGSYQRLEFLGDRVLGLVIASMLHKH 70 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A EGEL+ RFN +V ETC+++A+EL + +R+ + T++ AD+ ES+ Sbjct: 71 FPRADEGELARRFNHMVKRETCAEIAQELGVGDAMRIGLAEAQTGGRKKTALLADICESV 130 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YLDGG E A +F+ + W+ R L RDAKT LQEWA +K TP Y VT R G Sbjct: 131 IAAIYLDGGFEAAESFITRLWEPRMLSWSGPLRDAKTTLQEWAQSKSLPTPRYDVTSRDG 190 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 PDH P FTV V + GL P +G SKR AEQ AA VL+REG+W Sbjct: 191 PDHAPNFTVSVTVQGLPPGEGKGGSKRIAEQNAAEAVLRREGVW 234 >gi|260771275|ref|ZP_05880202.1| ribonuclease III [Vibrio furnissii CIP 102972] gi|260613872|gb|EEX39064.1| ribonuclease III [Vibrio furnissii CIP 102972] Length = 225 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ S LE ++GY F N L+ ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PISRLETKLGYQFNNAELISLALTHRSANGKH---NERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE DL ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD IEVA V +++ R A+K G ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDIEVARATVLSWYQSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FTV +I+G+ P G S+R AEQ AA L++ Sbjct: 177 NIKGEAHNQEFTVACDIAGIGAPVIGKGTSRRKAEQAAAETALEQL 222 >gi|167751472|ref|ZP_02423599.1| hypothetical protein EUBSIR_02468 [Eubacterium siraeum DSM 15702] gi|167655280|gb|EDR99409.1| hypothetical protein EUBSIR_02468 [Eubacterium siraeum DSM 15702] gi|291557094|emb|CBL34211.1| RNAse III [Eubacterium siraeum V10Sc8a] Length = 226 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 119/224 (53%), Gaps = 3/224 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + LE+ IGY F N LL++ALTHSS ++ + S ERLEFLGD +L +++S LF + + Sbjct: 2 TELEQIIGYTFKNPELLKEALTHSSYTNGKHLRSNERLEFLGDSVLSIVVSEHLFENLTN 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ S+V AR++DL +I + SI AD E+LIAA Sbjct: 62 LPEGQLTKIRASVVCENALYPFARKIDLGKYIFLGKGEEHTGGRDRHSILADAFEALIAA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQRA-LKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGG E A +F+ + L +GKF D KT LQE Y+++ SG Sbjct: 122 IYLDGGFEAARSFILPFIPPLDKLSTGKFLLGDYKTVLQEIIQQNPEERVTYEISDESGQ 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 H+ +FT V ++G G SK+ AEQ AA E + G T Sbjct: 182 AHNKQFTANVLLNGQIIGTGKGKSKKEAEQSAAKEAISLMGYET 225 >gi|84390104|ref|ZP_00991366.1| ribonuclease III [Vibrio splendidus 12B01] gi|86146359|ref|ZP_01064683.1| ribonuclease III [Vibrio sp. MED222] gi|218710569|ref|YP_002418190.1| ribonuclease III [Vibrio splendidus LGP32] gi|254807909|sp|B7VK79|RNC_VIBSL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|84376758|gb|EAP93633.1| ribonuclease III [Vibrio splendidus 12B01] gi|85835838|gb|EAQ53972.1| ribonuclease III [Vibrio sp. MED222] gi|218323588|emb|CAV19828.1| Ribonuclease III [Vibrio splendidus LGP32] Length = 225 Score = 278 bits (712), Expect = 4e-73, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ LE++IGY F + L+ ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIDKLERKIGYQFNDADLIHLALTHRSAAGKH---NERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE +L ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGHTLAELGREFELGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD EV + +++ R ++ G ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAVYLDSDTEVVRRIILSWYQSRLESIQPGVSQKDPKTRLQEFLQGRRNPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222 >gi|237807623|ref|YP_002892063.1| ribonuclease III [Tolumonas auensis DSM 9187] gi|237499884|gb|ACQ92477.1| ribonuclease III [Tolumonas auensis DSM 9187] Length = 223 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 126/226 (55%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + S LE+++GY F N+ LL +A+TH S + ERLEFLGD IL L+I+ +L+ Sbjct: 1 MND-KLSRLEQKLGYPFQNKDLLVRAITHRSAGSRH---NERLEFLGDSILSLVIAEVLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F + EG++S +LV +T +++ARE L ++ + K SI AD VE Sbjct: 57 HRFPNVSEGDMSRMRATLVREKTLAELAREFALGDYLILGPGELKSGGYRRESILADTVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD ++ T + ++ +R ++ G ++D KT LQE+ + P Y VT Sbjct: 117 ALIGAIYLDSDLDGIRTLMLNWYNERLDSIRPGVEQKDPKTRLQEFLQGRRRPLPTYAVT 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223 G H+ +FTV I + A G+ S+R AEQ AA L++ Sbjct: 177 DVKGEAHNQQFTVECAIDDIEAAFVGVGSSRRKAEQAAAERALEQL 222 >gi|15964825|ref|NP_385178.1| ribonuclease III [Sinorhizobium meliloti 1021] gi|307300895|ref|ZP_07580664.1| ribonuclease III [Sinorhizobium meliloti BL225C] gi|307320712|ref|ZP_07600124.1| ribonuclease III [Sinorhizobium meliloti AK83] gi|22654067|sp|Q92R47|RNC_RHIME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|15074004|emb|CAC45651.1| Probable ribonuclease III [Sinorhizobium meliloti 1021] gi|306893639|gb|EFN24413.1| ribonuclease III [Sinorhizobium meliloti AK83] gi|306903850|gb|EFN34436.1| ribonuclease III [Sinorhizobium meliloti BL225C] Length = 238 Score = 278 bits (711), Expect = 6e-73, Method: Composition-based stats. Identities = 131/226 (57%), Positives = 165/226 (73%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 ++ + LE IGY FA + L++ALTHSS +Y+RLEFLGDR+LGL ++ LLF Sbjct: 6 LNTEDRARLEAAIGYRFAEKERLDRALTHSSARSGRAINYQRLEFLGDRVLGLCVAELLF 65 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LVSAE+C++VA EL L FIR SD++K M +++ADVVE Sbjct: 66 QTFTDANEGELSVRLNQLVSAESCAKVADELSLHEFIRTGSDVKKITGKHMMNVRADVVE 125 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAA+YLDGG++ A FV ++W RA + RRDAKTELQEWAHAKFGV P+Y+ R Sbjct: 126 SLIAAIYLDGGLDAARRFVLEHWTHRAASADGARRDAKTELQEWAHAKFGVAPKYRTDDR 185 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDPRFTV VE+ G+AP G+D SKR AEQVAA ++L+REG+W Sbjct: 186 SGPDHDPRFTVTVEVDGIAPETGVDRSKRGAEQVAAMKLLEREGVW 231 >gi|148981907|ref|ZP_01816565.1| ribonuclease III [Vibrionales bacterium SWAT-3] gi|145960708|gb|EDK26050.1| ribonuclease III [Vibrionales bacterium SWAT-3] Length = 225 Score = 277 bits (710), Expect = 7e-73, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ LE++IGY F + L+ ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIDKLERKIGYQFNDADLIHLALTHRSAAGKH---NERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE +L ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGHTLAELGREFELGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD E + +++ R A++ G ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDTETVRGIILSWYQSRLEAIQPGVSQKDPKTRLQEFLQGRRNPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222 >gi|150395906|ref|YP_001326373.1| ribonuclease III [Sinorhizobium medicae WSM419] gi|189043356|sp|A6U7A8|RNC_SINMW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|150027421|gb|ABR59538.1| Ribonuclease III [Sinorhizobium medicae WSM419] Length = 238 Score = 277 bits (710), Expect = 7e-73, Method: Composition-based stats. Identities = 132/226 (58%), Positives = 165/226 (73%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 ++A + LE IGY FA + L++ALTHSS +Y+RLEFLGDRILGL ++ LLF Sbjct: 6 LNAEDRARLEAAIGYQFAEKERLDRALTHSSARSGRAINYQRLEFLGDRILGLCVAELLF 65 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LVSAE+C++VA EL L FIR SD++K M +++ADVVE Sbjct: 66 QTFSDANEGELSVRLNQLVSAESCAKVADELSLHEFIRTGSDVKKITGKHMMNVRADVVE 125 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAA+YLDGG+E A FV ++W RA + RRDAKTELQEWAHA+FGV P+Y+ R Sbjct: 126 SLIAAIYLDGGLEAARRFVLEHWTHRAASADGARRDAKTELQEWAHARFGVAPKYRTEDR 185 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDPRFTV VE+ G+ P G+D SKR AEQVAA ++L+REG+W Sbjct: 186 SGPDHDPRFTVTVEVDGIDPETGVDRSKRGAEQVAAMKLLEREGVW 231 >gi|167463674|ref|ZP_02328763.1| ribonuclease III [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382556|ref|ZP_08056436.1| ribonuclease III-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153472|gb|EFX45877.1| ribonuclease III-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 287 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 111/226 (49%), Gaps = 5/226 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 L+ RIG F N LL +A THSS + ++ + ERLEFLGD +L L++S L+ Sbjct: 58 DLKELQARIGITFNNVDLLRQAFTHSSYVNEHRITNHKDNERLEFLGDAVLELMVSEHLY 117 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EGEL+ S+V + A L+ S++ + ++ AD+ E Sbjct: 118 FTYPRRAEGELTKLRASIVCEPSLVNFAERLNFGSYVLLGKGEEMTGGRTRPALLADLFE 177 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179 S I ALYLD G+E F+ K+ GK D KT+LQE+ T EY++ Sbjct: 178 SFIGALYLDQGLEPVRDFLIKHVFPHISNEGKLLVVDYKTQLQEYVQHHNLGTLEYRIVE 237 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GP H+ F V++ G +G+ SK+ AEQ AA++ + + Sbjct: 238 ERGPAHEREFVAEVQMDGKILGKGVGRSKKEAEQQAASKASVKLNV 283 >gi|20807916|ref|NP_623087.1| dsRNA-specific ribonuclease [Thermoanaerobacter tengcongensis MB4] gi|22654052|sp|Q8R9W3|RNC_THETN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|20516484|gb|AAM24691.1| dsRNA-specific ribonuclease [Thermoanaerobacter tengcongensis MB4] Length = 228 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 122/226 (53%), Gaps = 5/226 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62 + LE++I Y F +++LL +ALTHSS +H + S ERLEFLGD +L L+IS L+ + Sbjct: 2 LTYLEQKINYEFKDKTLLLEALTHSSWAHEGKNEKVSNERLEFLGDSVLSLVISEYLYKN 61 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 +EG LS +V + ++ AR+++L SF+R+ SI AD +E+L Sbjct: 62 RKDLEEGSLSKYRAEIVCEPSLARCARKIELGSFLRMGKGEEISGGRDRDSILADAMEAL 121 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +AA+YLDGG+E + +K+ + G RD KT LQE + Y++ Sbjct: 122 LAAVYLDGGLEAVRRVILDLFKEIIDEVLKGIIYRDYKTRLQEVVQSMEVGKITYELVEE 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDH+ F V+I + G SK+ +EQ AA E L + GI Sbjct: 182 IGPDHNKTFVTQVKIGDVVLGIGQGKSKKESEQAAAMEALSKLGIL 227 >gi|220928138|ref|YP_002505047.1| ribonuclease III [Clostridium cellulolyticum H10] gi|219998466|gb|ACL75067.1| ribonuclease III [Clostridium cellulolyticum H10] Length = 236 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 121/233 (51%), Gaps = 10/233 (4%) Query: 1 MSALRY----STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILG 52 M+ +RY S LE IGY F N+ ++ A+THSS ++ + + ERLEFLGD +LG Sbjct: 1 MAEIRYDNRISELEDIIGYTFKNKDIIFAAVTHSSYANEKKSRKLKYNERLEFLGDSVLG 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L IS LF + EGELSV +V + SQ A ++ L ++ + Sbjct: 61 LTISEYLFQKKPNLPEGELSVTRAKIVCENSLSQCATDIGLGKYLLLGKGEELSGGREKI 120 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFG 170 S+ +D E+LI ALY+DGG E A +F+ +Y + ++ GK D KT+LQE Sbjct: 121 SLLSDAFEALIGALYIDGGFETAKSFIYRYMDKIIKSCIEGKLFYDYKTQLQELVQQNGE 180 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y VT + GPDH+ F V+I+G +G SK+ AEQ AA L Sbjct: 181 QQITYSVTDQFGPDHNKTFITEVKINGAIQGRGKGHSKKEAEQNAAKNALNNL 233 >gi|170749855|ref|YP_001756115.1| ribonuclease III [Methylobacterium radiotolerans JCM 2831] gi|170656377|gb|ACB25432.1| Ribonuclease III [Methylobacterium radiotolerans JCM 2831] Length = 259 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 90/220 (40%), Positives = 131/220 (59%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + LE+RIG++F ++ LL +ALTH+S + SY+RLEFLGDR+LGL ++ L+ F Sbjct: 28 LTALEERIGHSFGDQDLLTRALTHTSKASGRGGSYQRLEFLGDRVLGLAVADRLYGAFPE 87 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EG+LS R +LV ETC+ VA ++ + + +I ADV E+++ A Sbjct: 88 ADEGDLSRRLAALVRRETCAAVAASWEVGPHLILGQGEVMGGGRRNQTILADVCEAILGA 147 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +YLD G + A V+ +++ + RDAK+ LQEWA + P Y V R+GPDH Sbjct: 148 IYLDAGFDAARAVVETHFRPGEPTAAARGRDAKSALQEWAMGRSLPIPTYAVVERTGPDH 207 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PRF + V++ GL P G SKR AEQ AA +++REGI Sbjct: 208 APRFRIAVQVEGLEPGLGDGTSKRIAEQAAARALMEREGI 247 >gi|225019245|ref|ZP_03708437.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum DSM 5476] gi|224947876|gb|EEG29085.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum DSM 5476] Length = 228 Score = 275 bits (704), Expect = 4e-72, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 113/223 (50%), Gaps = 5/223 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNH 62 EK IGY F N+ LLE+ALTHSS ++ + ++ ERLEFLGD ++ L+I+ LF + Sbjct: 2 KNFEKTIGYTFHNQKLLEQALTHSSFTNETGRHHHKNNERLEFLGDSVVSLIIANHLFVN 61 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EGEL+ SLV + ++ A +DL + + + S D E+L Sbjct: 62 FPDMPEGELTKLRASLVCDRSLAEFAGRIDLGNQLIMGKGEEHSGGRQRRSNLEDAFEAL 121 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A+YLDGG+E A +FV + + L S D KT LQE Y + S Sbjct: 122 VGAIYLDGGLEAARSFVLGFIPKTLDLNSISRVTDYKTALQEIIQKNPEEKLSYVLVSES 181 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDHD F V ++ G SK+ AEQ AA + L+ G Sbjct: 182 GPDHDKMFEAEVHLNSNVIGTGSGKSKKQAEQNAAKQALELMG 224 >gi|258622345|ref|ZP_05717370.1| Ribonuclease 3 [Vibrio mimicus VM573] gi|258626729|ref|ZP_05721551.1| Ribonuclease 3 [Vibrio mimicus VM603] gi|258580985|gb|EEW05912.1| Ribonuclease 3 [Vibrio mimicus VM603] gi|258585361|gb|EEW10085.1| Ribonuclease 3 [Vibrio mimicus VM573] Length = 225 Score = 275 bits (703), Expect = 5e-72, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 117/220 (53%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + + ERLEFLGD IL +I+ L++ F Sbjct: 6 NKLTSKLGYTFKEIELLNLALTHRSANGKH---NERLEFLGDSILSFVIADELYHRFPKV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 63 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A V +++ + +K G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSDLETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222 >gi|262404774|ref|ZP_06081329.1| ribonuclease III [Vibrio sp. RC586] gi|262349806|gb|EEY98944.1| ribonuclease III [Vibrio sp. RC586] Length = 225 Score = 274 bits (702), Expect = 6e-72, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 117/220 (53%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + + ERLEFLGD IL +I+ L+ F Sbjct: 6 NKLTSKLGYTFKEIELLNLALTHRSANGKH---NERLEFLGDSILSFVIADELYRRFPKV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 63 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A + V +++ R +K G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSDLETARSIVLEWYHGRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222 >gi|317131320|ref|YP_004090634.1| ribonuclease III [Ethanoligenens harbinense YUAN-3] gi|315469299|gb|ADU25903.1| ribonuclease III [Ethanoligenens harbinense YUAN-3] Length = 226 Score = 274 bits (702), Expect = 7e-72, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 125/226 (55%), Gaps = 9/226 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 LEK +GY FA++SLLE ALTHSS ++ ++ S ERLEFLGD +LG++ + L+ Sbjct: 2 LEELEKNLGYTFADKSLLENALTHSSYANEMKKHSCGSNERLEFLGDAVLGIISAEYLYF 61 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H EGEL+ S+V + AR ++L ++R+ +SI AD E+ Sbjct: 62 HHTRVPEGELTRLRASMVCERSLQGFARTVELGRWLRLGRGEENTGGRERSSILADAFEA 121 Query: 122 LIAALYLDGGIEVAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +IAA+Y+DGG A FV ++ + L++G RRD KTELQE G EY + Sbjct: 122 VIAAIYIDGGFPAAKRFVTRFADSFFAAHLENG--RRDYKTELQEIVQKNHGEKLEYVLV 179 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGPDHD +F V V ++ G SK+ AEQ+AA E L G Sbjct: 180 GESGPDHDKQFLVEVHLNNNCIGAGRGGSKKEAEQMAAREALSLMG 225 >gi|121728984|ref|ZP_01681988.1| ribonuclease III [Vibrio cholerae V52] gi|147674970|ref|YP_001217963.1| ribonuclease III [Vibrio cholerae O395] gi|153214513|ref|ZP_01949422.1| ribonuclease III [Vibrio cholerae 1587] gi|153803086|ref|ZP_01957672.1| ribonuclease III [Vibrio cholerae MZO-3] gi|153826905|ref|ZP_01979572.1| ribonuclease III [Vibrio cholerae MZO-2] gi|153830879|ref|ZP_01983546.1| ribonuclease III [Vibrio cholerae 623-39] gi|229514087|ref|ZP_04403549.1| ribonuclease III [Vibrio cholerae TMA 21] gi|229521288|ref|ZP_04410708.1| ribonuclease III [Vibrio cholerae TM 11079-80] gi|229524448|ref|ZP_04413853.1| ribonuclease III [Vibrio cholerae bv. albensis VL426] gi|229527069|ref|ZP_04416464.1| ribonuclease III [Vibrio cholerae 12129(1)] gi|254226246|ref|ZP_04919839.1| ribonuclease III [Vibrio cholerae V51] gi|254291661|ref|ZP_04962449.1| ribonuclease III [Vibrio cholerae AM-19226] gi|297581085|ref|ZP_06943010.1| ribonuclease III [Vibrio cholerae RC385] gi|189043374|sp|A5F5H8|RNC_VIBC3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|121628750|gb|EAX61217.1| ribonuclease III [Vibrio cholerae V52] gi|124115315|gb|EAY34135.1| ribonuclease III [Vibrio cholerae 1587] gi|124121368|gb|EAY40111.1| ribonuclease III [Vibrio cholerae MZO-3] gi|125621219|gb|EAZ49560.1| ribonuclease III [Vibrio cholerae V51] gi|146316853|gb|ABQ21392.1| ribonuclease III [Vibrio cholerae O395] gi|148873648|gb|EDL71783.1| ribonuclease III [Vibrio cholerae 623-39] gi|149739268|gb|EDM53530.1| ribonuclease III [Vibrio cholerae MZO-2] gi|150422433|gb|EDN14392.1| ribonuclease III [Vibrio cholerae AM-19226] gi|227014353|gb|ACP10563.1| ribonuclease III [Vibrio cholerae O395] gi|229335466|gb|EEO00948.1| ribonuclease III [Vibrio cholerae 12129(1)] gi|229338029|gb|EEO03046.1| ribonuclease III [Vibrio cholerae bv. albensis VL426] gi|229341820|gb|EEO06822.1| ribonuclease III [Vibrio cholerae TM 11079-80] gi|229349268|gb|EEO14225.1| ribonuclease III [Vibrio cholerae TMA 21] gi|297534911|gb|EFH73747.1| ribonuclease III [Vibrio cholerae RC385] Length = 225 Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 117/220 (53%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + + ERLEFLGD IL +I+ L+ F Sbjct: 6 NKLTSKLGYTFKETELLNLALTHRSANGKH---NERLEFLGDSILSFVIADELYRRFPKV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 63 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A V ++++ R +K G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSDLETARRIVLEWYQCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222 >gi|307946585|ref|ZP_07661920.1| ribonuclease III [Roseibium sp. TrichSKD4] gi|307770249|gb|EFO29475.1| ribonuclease III [Roseibium sp. TrichSKD4] Length = 235 Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats. Identities = 103/225 (45%), Positives = 144/225 (64%), Gaps = 3/225 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62 L +R+ Y F + L+ KALTH+S + +SY+RLEFLGDR+LGL+++T+L + Sbjct: 10 LRQLSERLHYTFKDEKLIRKALTHASALEPGEGDDQSYQRLEFLGDRVLGLVVATMLHKN 69 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A EGEL+ RFN +V ETC+++A+EL+L +R+ + T++ AD+ E++ Sbjct: 70 FPKADEGELARRFNHMVKRETCAEIAQELNLGDAMRIGHSEAQTGGRKKTALLADICEAV 129 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YLDGG + A F+ ++WK+R L RDAKT LQEWA +K TP Y+V R G Sbjct: 130 IAAIYLDGGFDAATAFIQRFWKKRMLSWTGPLRDAKTTLQEWAQSKSLPTPFYEVISRDG 189 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 PDH P F V V + GL +G SKR AEQ AA VL+REG+W Sbjct: 190 PDHAPIFVVAVAVKGLENGEGKGGSKRLAEQNAAEAVLRREGVWN 234 >gi|326203626|ref|ZP_08193490.1| ribonuclease III [Clostridium papyrosolvens DSM 2782] gi|325986446|gb|EGD47278.1| ribonuclease III [Clostridium papyrosolvens DSM 2782] Length = 236 Score = 274 bits (701), Expect = 8e-72, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 R S LE IG+ F N+ ++ A+THSS ++ + + ERLEFLGD +LGL+IS LF Sbjct: 9 RISELENIIGHNFNNKDIIFAAITHSSYANEKKAKKLKYNERLEFLGDSVLGLVISEYLF 68 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EGELSV +V + SQ A ++ L ++ + S+ +D E Sbjct: 69 QKKPNLPEGELSVTRAKIVCENSLSQCATDISLGKYLLLGKGEELSGGREKISLLSDAFE 128 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ALY+DGG E A FV KY + R+ GK D KT+LQE Y VT Sbjct: 129 ALIGALYIDGGFETAKGFVHKYMDKIIRSCIEGKLFYDYKTQLQELVQQNGEQQISYSVT 188 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GPDH+ F V+I+G+ QG SK+ AEQ AA + L Sbjct: 189 DQFGPDHNKTFVTEVKINGVTQGQGKGHSKKEAEQNAAKDALNNL 233 >gi|323705471|ref|ZP_08117046.1| ribonuclease III [Thermoanaerobacterium xylanolyticum LX-11] gi|323535373|gb|EGB25149.1| ribonuclease III [Thermoanaerobacterium xylanolyticum LX-11] Length = 232 Score = 273 bits (700), Expect = 9e-72, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 5/226 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 RY LEK +GY F N+ LL+ ALTHSS ++ + S ERLEFLGD +L ++IS L+ Sbjct: 6 RYENLEKNMGYTFNNKKLLKNALTHSSWANESKNFLSSNERLEFLGDSVLSIVISEYLYK 65 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + +EG LS +V + ++ ARE+D+ ++ + SI AD +E+ Sbjct: 66 NRTDLEEGYLSKYRAEIVCEPSLARCAREIDIGKYLNIGRGEEMTGGRNRDSILADAMEA 125 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LIAA+YLD ++ V + +++ + SG RD KT+LQE YK+ Sbjct: 126 LIAAVYLDSDLKTVSEVVLRLFEKIINEVLSGLIYRDYKTKLQEVTQKMGSERVIYKLID 185 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDH+ F + V + +G SK+ AEQ AA E L + G+ Sbjct: 186 EYGPDHNKMFVIEVFVGENRLGRGKGRSKKEAEQYAAMEALSKMGL 231 >gi|91977122|ref|YP_569781.1| ribonuclease III [Rhodopseudomonas palustris BisB5] gi|91683578|gb|ABE39880.1| RNAse III [Rhodopseudomonas palustris BisB5] Length = 271 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 103/224 (45%), Positives = 141/224 (62%), Gaps = 3/224 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 +E+RIG+ FA+ SLL ALTH S + + +SY+RLEFLGD +LGL++S +L+ F Sbjct: 43 EVIEQRIGHTFADPSLLNTALTHVSALKSARNRADSYQRLEFLGDHVLGLVVSDMLYRAF 102 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +A EGELS R LV ETC+ +AR LDL I++ + S+ D+ E++I Sbjct: 103 PNADEGELSKRLADLVRKETCADIARSLDLLDGIKLGTVGAGAGARLRKSVLGDICEAVI 162 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++LDGG A FV + W +R K + RD KT LQEWA K TP Y+ R+GP Sbjct: 163 GAVFLDGGYPAAADFVQRNWTERMRKPARSLRDPKTVLQEWAQGKGLPTPVYREVERTGP 222 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 HDP+F V V + GL PA+G+ SKRAAE+VAA+ +L REG+ T Sbjct: 223 HHDPQFRVAVSLPGLEPAEGVGGSKRAAEKVAASVMLAREGVST 266 >gi|197303071|ref|ZP_03168119.1| hypothetical protein RUMLAC_01798 [Ruminococcus lactaris ATCC 29176] gi|197297926|gb|EDY32478.1| hypothetical protein RUMLAC_01798 [Ruminococcus lactaris ATCC 29176] Length = 229 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 82/220 (37%), Positives = 113/220 (51%), Gaps = 5/220 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 R LEK+IGY F N LLE+A+ HSS ++ ERLEFLGD +L L+ S LF Sbjct: 4 RLKELEKKIGYTFENHKLLERAMMHSSYTNEKHLEKYRCNERLEFLGDAVLELISSEYLF 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EGEL+ S+V + + AR++DL S++ + SI +D +E Sbjct: 64 GELPRVSEGELTKTRASMVCEPSLAMCARDIDLGSYLLLGKGEEATGGRMRDSITSDAME 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI A+YLDGG A F+ ++ L+ K D+KT LQE A Y++ Sbjct: 124 ALIGAIYLDGGFTSAKEFIHRFILT-DLEDKKLFYDSKTILQEIVQANKAGNITYELVGE 182 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDH+ F V V I G G SK+AAEQ AA + + Sbjct: 183 EGPDHNKTFEVRVRIGGQPYGSGKGRSKKAAEQKAAYQAI 222 >gi|241203889|ref|YP_002974985.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857779|gb|ACS55446.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 239 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 133/226 (58%), Positives = 172/226 (76%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +SA + LE IG+ FA + L++ALTH+S +YERLEFLGDR+LGL I+ LLF Sbjct: 7 LSAADRAKLEALIGHDFAEKERLDRALTHASARTEKGGNYERLEFLGDRVLGLCIAELLF 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F +A EGELSVR N LVSAETC+ VA EL+L +IR +D++K M +++ADVVE Sbjct: 67 RTFGTAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAA+YLDGG+EVA F+ +YW+ RA+++ +RDAKTELQEW+HAKFGVTP Y+V R Sbjct: 127 SLIAAIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDER 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDPRF V VE++G+ P G++ SKRAAEQVAA ++L+REGIW Sbjct: 187 SGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232 >gi|86357028|ref|YP_468920.1| ribonuclease III [Rhizobium etli CFN 42] gi|123512466|sp|Q2KAE3|RNC_RHIEC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|86281130|gb|ABC90193.1| ribonuclease III protein [Rhizobium etli CFN 42] Length = 239 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 133/226 (58%), Positives = 172/226 (76%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +SA + LE IG+ FA + L++ALTH+S +YERLEFLGDR+LGL I+ LLF Sbjct: 7 LSAADRAKLEALIGHDFAEKERLDRALTHASARTEKGSNYERLEFLGDRVLGLCIAELLF 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F +A EGELSVR N LVSAETC+ VA EL+L +IR +D++K M +++ADVVE Sbjct: 67 RTFGTAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAA+YLDGG+EVA F+ +YW+ RA+++ +RDAKTELQEW+HAKFGVTP Y+V R Sbjct: 127 SLIAAIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDER 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDPRF V VE++G+ P G++ SKRAAEQVAA ++L+REGIW Sbjct: 187 SGPDHDPRFRVTVEVAGIKPESGVERSKRAAEQVAATKMLEREGIW 232 >gi|167745647|ref|ZP_02417774.1| hypothetical protein ANACAC_00339 [Anaerostipes caccae DSM 14662] gi|317472750|ref|ZP_07932063.1| ribonuclease III [Anaerostipes sp. 3_2_56FAA] gi|167654959|gb|EDR99088.1| hypothetical protein ANACAC_00339 [Anaerostipes caccae DSM 14662] gi|316899776|gb|EFV21777.1| ribonuclease III [Anaerostipes sp. 3_2_56FAA] Length = 231 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 116/231 (50%), Gaps = 6/231 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ +K+I F ++ LL ALTHSS ++ + + ERLEFLGD +L L++S Sbjct: 1 MNQSNQEDFQKKIKIRFHDKKLLTTALTHSSYANERKLSRGKDNERLEFLGDAVLELIMS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF+ + EG+L+ SLV T + A++L L ++ +S SI + Sbjct: 61 DYLFHTYKDEPEGKLTKMRASLVCEPTLAFCAKDLSLGDYLLLSKGEDLTGGRERDSILS 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D E++I A+YLD G E A FV+ Y Q + DAKT LQE + Y+ Sbjct: 121 DAFEAVIGAVYLDQGFEEARKFVETYLLQ-DVDEKVLFYDAKTSLQELVQSFSKQPLTYE 179 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK-REGIW 226 + GPDH FTV + G SK++AEQ AA E +K ++GI Sbjct: 180 LIKEDGPDHQKTFTVEARLGEKVIGTGTGRSKKSAEQTAAYEAMKHKDGIL 230 >gi|15642457|ref|NP_232090.1| ribonuclease III [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590982|ref|ZP_01678301.1| ribonuclease III [Vibrio cholerae 2740-80] gi|153820073|ref|ZP_01972740.1| ribonuclease III [Vibrio cholerae NCTC 8457] gi|153823692|ref|ZP_01976359.1| ribonuclease III [Vibrio cholerae B33] gi|227082582|ref|YP_002811133.1| ribonuclease III [Vibrio cholerae M66-2] gi|229507479|ref|ZP_04396984.1| ribonuclease III [Vibrio cholerae BX 330286] gi|229512326|ref|ZP_04401805.1| ribonuclease III [Vibrio cholerae B33] gi|229519462|ref|ZP_04408905.1| ribonuclease III [Vibrio cholerae RC9] gi|229606984|ref|YP_002877632.1| ribonuclease III [Vibrio cholerae MJ-1236] gi|254849586|ref|ZP_05238936.1| ribonuclease III [Vibrio cholerae MO10] gi|298500182|ref|ZP_07009987.1| ribonuclease III [Vibrio cholerae MAK 757] gi|18203192|sp|Q9KPB2|RNC_VIBCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807908|sp|C3LR04|RNC_VIBCM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|9657039|gb|AAF95603.1| ribonuclease III [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547159|gb|EAX57288.1| ribonuclease III [Vibrio cholerae 2740-80] gi|126509385|gb|EAZ71979.1| ribonuclease III [Vibrio cholerae NCTC 8457] gi|126518780|gb|EAZ76003.1| ribonuclease III [Vibrio cholerae B33] gi|227010470|gb|ACP06682.1| ribonuclease III [Vibrio cholerae M66-2] gi|229344151|gb|EEO09126.1| ribonuclease III [Vibrio cholerae RC9] gi|229352291|gb|EEO17232.1| ribonuclease III [Vibrio cholerae B33] gi|229354984|gb|EEO19905.1| ribonuclease III [Vibrio cholerae BX 330286] gi|229369639|gb|ACQ60062.1| ribonuclease III [Vibrio cholerae MJ-1236] gi|254845291|gb|EET23705.1| ribonuclease III [Vibrio cholerae MO10] gi|297540875|gb|EFH76929.1| ribonuclease III [Vibrio cholerae MAK 757] Length = 225 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 117/220 (53%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + + ERLEFLGD IL +I+ L+ F Sbjct: 6 NKLTSKLGYTFKETELLNLALTHRSANGKH---NERLEFLGDSILSFVIADELYRRFPKV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 63 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A + V +++ R +K G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSDLETARSIVLEWYHGRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222 >gi|316934144|ref|YP_004109126.1| ribonuclease III [Rhodopseudomonas palustris DX-1] gi|315601858|gb|ADU44393.1| ribonuclease III [Rhodopseudomonas palustris DX-1] Length = 272 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 105/219 (47%), Positives = 141/219 (64%), Gaps = 2/219 (0%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+RIG++FA+ SLL ALTH S S +SY+RLEFLGD +LGL++S +L+ F A Sbjct: 47 IEQRIGHSFADPSLLTTALTHVSALKSARRTDSYQRLEFLGDHVLGLIVSDMLYRAFPDA 106 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS R LV E+C+ VAR LDL+ I++ + S+ D+ E++I A+ Sbjct: 107 DEGELSKRLADLVRKESCADVARHLDLSEGIKIGTVGAGAGAKLRKSVLGDICEAVIGAV 166 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG E A FV W +R K + RD KT LQEWA A+ TP Y+ R+GP HD Sbjct: 167 YLDGGYEAASNFVRSNWTERMHKPVRSLRDPKTVLQEWAQARGLPTPVYREVERTGPHHD 226 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P+F V V + GL PA+G+ SKRAAE+VAA+ +L REG+ Sbjct: 227 PQFRVAVVLPGLEPAEGVGGSKRAAEKVAASAMLAREGV 265 >gi|126698844|ref|YP_001087741.1| ribonuclease III [Clostridium difficile 630] gi|254974792|ref|ZP_05271264.1| ribonuclease III [Clostridium difficile QCD-66c26] gi|255092180|ref|ZP_05321658.1| ribonuclease III [Clostridium difficile CIP 107932] gi|255100264|ref|ZP_05329241.1| ribonuclease III [Clostridium difficile QCD-63q42] gi|255306204|ref|ZP_05350376.1| ribonuclease III [Clostridium difficile ATCC 43255] gi|255313919|ref|ZP_05355502.1| ribonuclease III [Clostridium difficile QCD-76w55] gi|255516598|ref|ZP_05384274.1| ribonuclease III [Clostridium difficile QCD-97b34] gi|255649698|ref|ZP_05396600.1| ribonuclease III [Clostridium difficile QCD-37x79] gi|260682854|ref|YP_003214139.1| ribonuclease III [Clostridium difficile CD196] gi|260686452|ref|YP_003217585.1| ribonuclease III [Clostridium difficile R20291] gi|306519814|ref|ZP_07406161.1| ribonuclease III [Clostridium difficile QCD-32g58] gi|115250281|emb|CAJ68103.1| ribonuclease III [Clostridium difficile] gi|260209017|emb|CBA62108.1| putative ribonuclease III [Clostridium difficile CD196] gi|260212468|emb|CBE03371.1| putative ribonuclease III [Clostridium difficile R20291] Length = 236 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 119/226 (52%), Gaps = 5/226 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNH 62 E I Y F N+ + +ALTHSS S+ ++ ERLEFLGD +LG++IS LFN Sbjct: 10 NIQRFENVINYKFKNKEYILEALTHSSYSNENKKYNFNERLEFLGDSVLGIVISDYLFNE 69 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EGEL+ ++V ++ S+VA +++L + + TSI AD E++ Sbjct: 70 EANLPEGELTKLRANIVCEDSLSEVANDINLGIHMLLGRGEEATGGRHRTSILADAFEAV 129 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 IAA+YLDGG E A F+ + + S G RD KT LQE Y++ Sbjct: 130 IAAIYLDGGFESARQFILHHMENIIYDSRKGNIFRDYKTHLQEVLQGNGENNIWYRLIEE 189 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDH+ RF + V I+ G SK+ AEQ+AA LK++ +W Sbjct: 190 KGPDHNKRFVMEVGINDDVLGIGEGKSKKEAEQLAAKIALKKK-LW 234 >gi|86749730|ref|YP_486226.1| ribonuclease III [Rhodopseudomonas palustris HaA2] gi|86572758|gb|ABD07315.1| RNAse III [Rhodopseudomonas palustris HaA2] Length = 271 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 102/221 (46%), Positives = 141/221 (63%), Gaps = 3/221 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E+RIG++FA+ SLL ALTH S + + +SY+RLEFLGD +LGL++S +L+ F Sbjct: 44 AIEQRIGHSFADPSLLNTALTHVSALKSARNRADSYQRLEFLGDHVLGLVVSDMLYRAFP 103 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +A EGELS R LV ETC+ VAR LDL +++ + S+ D+ E++I Sbjct: 104 NADEGELSKRLADLVRKETCADVARSLDLDEGVKLGTVGAGAGARLRKSVLGDICEAVIG 163 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A++LDGG A FV + W +R K + RD KT LQEWA K TP Y+ R+GP Sbjct: 164 AVFLDGGYPAAAEFVQRNWTERMRKPTRSLRDPKTVLQEWAQGKGLPTPVYREVERTGPH 223 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 HDP+F V V + GL PA+G+ SKRAAE+VAA+ +L REG+ Sbjct: 224 HDPQFRVAVSLPGLDPAEGVGGSKRAAEKVAASVMLAREGV 264 >gi|209548601|ref|YP_002280518.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226741375|sp|B5ZW73|RNC_RHILW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|209534357|gb|ACI54292.1| Ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 239 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 133/226 (58%), Positives = 172/226 (76%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +SA + LE IG+ FA + L++ALTH+S +YERLEFLGDR+LGL I+ LLF Sbjct: 7 LSAADRAKLEGLIGHDFAEKERLDRALTHASARTEKGGNYERLEFLGDRVLGLCIAELLF 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F +A EGELSVR N LVSAETC+ VA EL+L +IR +D++K M +++ADVVE Sbjct: 67 RTFGTAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAA+YLDGG+EVA F+ +YW+ RA+++ +RDAKTELQEW+HAKFGVTP Y+V R Sbjct: 127 SLIAAIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPNYRVDER 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDPRF V VE++G+ P G++ SKRAAEQVAA ++L+REGIW Sbjct: 187 SGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232 >gi|119774017|ref|YP_926757.1| ribonuclease III [Shewanella amazonensis SB2B] gi|189043345|sp|A1S3Y1|RNC_SHEAM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|119766517|gb|ABL99087.1| RNAse III [Shewanella amazonensis SB2B] Length = 226 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 130/225 (57%), Gaps = 7/225 (3%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M ++ L + +GY F++ LLE+ALTH S S+ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNLPRLCRTLGYEFSDIRLLEQALTHRSASNQH---NERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F+ F A EG+LS +LV +T + +A+E L ++ + K SI AD V Sbjct: 58 FHQFPKATEGDLSRMRATLVRGDTLAVIAKEFKLGDYLNLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD +E + + +++ R +K G ++DAKT LQE+ PEY+V Sbjct: 118 EAIIGAVYLDADLETCRSLLLGWYETRLADIKPGVGQKDAKTLLQEYLQGMKKPLPEYQV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 T G HD FTV ++ LA A G+ S+R AEQ+AAA+VL+ Sbjct: 178 TQVEGEAHDQTFTVECRVTDLADAVVGVGSSRRKAEQMAAAQVLE 222 >gi|116251277|ref|YP_767115.1| ribonuclease III [Rhizobium leguminosarum bv. viciae 3841] gi|189043336|sp|Q1MJ54|RNC_RHIL3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|115255925|emb|CAK07006.1| putative ribonuclease III [Rhizobium leguminosarum bv. viciae 3841] Length = 239 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 133/226 (58%), Positives = 172/226 (76%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +SA + LE IG+ FA + L++ALTH+S +YERLEFLGDR+LGL I+ LLF Sbjct: 7 LSAADRAKLEGLIGHDFAEKERLDRALTHASARTEKGGNYERLEFLGDRVLGLCIAELLF 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F +A EGELSVR N LVSAETC+ VA EL+L +IR +D++K M +++ADVVE Sbjct: 67 RTFGTAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAA+YLDGG+EVA F+ +YW+ RA+++ +RDAKTELQEW+HAKFGVTP Y+V R Sbjct: 127 SLIAAIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDER 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDPRF V VE++G+ P G++ SKRAAEQVAA ++L+REGIW Sbjct: 187 SGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232 >gi|39935763|ref|NP_948039.1| ribonuclease III [Rhodopseudomonas palustris CGA009] gi|192291350|ref|YP_001991955.1| ribonuclease III [Rhodopseudomonas palustris TIE-1] gi|81562548|sp|Q6N6C1|RNC_RHOPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|39649616|emb|CAE28138.1| putative ribonuclease III [Rhodopseudomonas palustris CGA009] gi|192285099|gb|ACF01480.1| Ribonuclease III [Rhodopseudomonas palustris TIE-1] Length = 272 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 105/221 (47%), Positives = 141/221 (63%), Gaps = 2/221 (0%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+R+G++FA+ SLL A TH S S +SY+RLEFLGD +LGL++S +L+ F A Sbjct: 47 IEQRLGHSFADPSLLTTAFTHVSALKSARRTDSYQRLEFLGDHVLGLIVSDMLYRAFPDA 106 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS R LV ETC+ VAR LDL I++ + S+ D+ E++I A+ Sbjct: 107 DEGELSKRLADLVRKETCADVARSLDLVEGIKLGTVGAGAGAKLRKSVLGDICEAVIGAI 166 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG E A FV + W +R K + RD KT LQEWA A+ TP Y+ R+GP HD Sbjct: 167 YLDGGYEAASDFVRRNWTERMRKPARSLRDPKTVLQEWAQARGLPTPVYREVERTGPHHD 226 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 P+F V V + GL PA+G+ SKRAAE+VAA+ +L REG+ T Sbjct: 227 PQFRVAVILPGLEPAEGLGGSKRAAEKVAASAMLAREGVGT 267 >gi|190891073|ref|YP_001977615.1| ribonuclease III protein [Rhizobium etli CIAT 652] gi|218515110|ref|ZP_03511950.1| ribonuclease III [Rhizobium etli 8C-3] gi|238692512|sp|B3PUN8|RNC_RHIE6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|190696352|gb|ACE90437.1| ribonuclease III protein [Rhizobium etli CIAT 652] gi|327191322|gb|EGE58355.1| ribonuclease III protein [Rhizobium etli CNPAF512] Length = 239 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 133/226 (58%), Positives = 172/226 (76%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +SA + LE IG+ FA + L++ALTH+S +YERLEFLGDR+LGL I+ LLF Sbjct: 7 LSAADRAKLESLIGHDFAEKERLDRALTHASARTEKGSNYERLEFLGDRVLGLCIAELLF 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F +A EGELSVR N LVSAETC+ VA EL+L +IR +D++K M +++ADVVE Sbjct: 67 RTFGTAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAA+YLDGG+EVA F+ +YW+ RA+++ +RDAKTELQEW+HAKFGVTP Y+V R Sbjct: 127 SLIAAIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPLYRVDER 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDPRF V VE++G+ P G++ SKRAAEQVAA ++L+REGIW Sbjct: 187 SGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232 >gi|254503847|ref|ZP_05115998.1| ribonuclease III [Labrenzia alexandrii DFL-11] gi|222439918|gb|EEE46597.1| ribonuclease III [Labrenzia alexandrii DFL-11] Length = 235 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 102/224 (45%), Positives = 141/224 (62%), Gaps = 3/224 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + L+ + Y F + LL +LTH+S + + SY+RLEFLGDR+LGL+++++L +H Sbjct: 10 IAALKAALAYEFKDLELLRVSLTHASALDPADTVAGSYQRLEFLGDRVLGLVVASMLHHH 69 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A EGEL+ RFN +V ETC+++A EL + +R+ + T++ AD+ E++ Sbjct: 70 FPKADEGELARRFNHMVKRETCAEIASELGVGDAMRIGQAEAQTGGRKKTALLADICEAI 129 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YLDGG E A FV + W+ R L RDAKT LQEWA +K TP Y+V R G Sbjct: 130 IAAIYLDGGFEAADEFVRRLWEPRMLSWTGPLRDAKTTLQEWAQSKSLPTPHYEVASREG 189 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 PDH P FTV V + GL +G SKR AEQ AA VL+REG+W Sbjct: 190 PDHAPSFTVSVIVQGLKNGEGKGGSKRIAEQHAAEAVLRREGVW 233 >gi|262170590|ref|ZP_06038268.1| ribonuclease III [Vibrio mimicus MB-451] gi|261891666|gb|EEY37652.1| ribonuclease III [Vibrio mimicus MB-451] Length = 221 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 117/220 (53%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + + ERLEFLGD IL +I+ L++ F Sbjct: 2 NKLTSKLGYTFKEIELLNLALTHRSANGKH---NERLEFLGDSILSFVIADELYHRFPKV 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 59 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118 Query: 127 YLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A V +++ + +K G ++D KT LQE+ + P Y VT G Sbjct: 119 YLDSDLETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 218 >gi|262166502|ref|ZP_06034239.1| ribonuclease III [Vibrio mimicus VM223] gi|262026218|gb|EEY44886.1| ribonuclease III [Vibrio mimicus VM223] Length = 225 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 117/220 (53%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + + ERLEFLGD IL +I+ L++ F Sbjct: 6 NKLTSKLGYTFKEIELLNLALTHRSANGKH---NERLEFLGDSILSFVIADELYHRFPKV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 63 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A V +++ + +K G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSELETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222 >gi|295100361|emb|CBK97906.1| RNAse III [Faecalibacterium prausnitzii L2-6] Length = 224 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 116/222 (52%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 LE IGY F + LLE ALTH+S ++ + + ERLEFLGD +L ++ + LF+ + Sbjct: 3 HQLETIIGYKFKHPELLETALTHTSYANETRPPVKHNERLEFLGDSVLQIVSADYLFHAY 62 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +SLVS Q A+E++L ++R+ S+ +D E+LI Sbjct: 63 ADRPEGDLTRIRSSLVSEGALFQFAQEINLGDYLRLGRGEEHCGGRTRPSVVSDAFEALI 122 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AALYLDGG+EVA F+ + + D KT LQE Y V +GP Sbjct: 123 AALYLDGGMEVAKNFILPFITE----GKHAEADYKTRLQEIVQQNPEEKLSYVVEQETGP 178 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 DH+ F V V + A+G SK+ AEQ AA E LK G+ Sbjct: 179 DHNKHFVVAVRFNSDCVARGEGRSKKMAEQHAAREALKLLGV 220 >gi|262167292|ref|ZP_06035002.1| ribonuclease III [Vibrio cholerae RC27] gi|262190709|ref|ZP_06048940.1| ribonuclease III [Vibrio cholerae CT 5369-93] gi|262024267|gb|EEY42958.1| ribonuclease III [Vibrio cholerae RC27] gi|262033421|gb|EEY51928.1| ribonuclease III [Vibrio cholerae CT 5369-93] gi|327484953|gb|AEA79360.1| Ribonuclease III [Vibrio cholerae LMA3894-4] Length = 221 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 117/220 (53%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + + ERLEFLGD IL +I+ L+ F Sbjct: 2 NKLTSKLGYTFKETELLNLALTHRSANGKH---NERLEFLGDSILSFVIADELYRRFPKV 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 59 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118 Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A V ++++ R +K G ++D KT LQE+ + P Y VT G Sbjct: 119 YLDSDLETARRIVLEWYQCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 218 >gi|304316939|ref|YP_003852084.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778441|gb|ADL69000.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 232 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 124/229 (54%), Gaps = 5/229 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTL 58 ++ +Y LEK IGY F N+ LL+ AL HSS ++ + S ERLEFLGD +L ++IS Sbjct: 3 TSEKYENLEKNIGYVFNNKKLLKNALAHSSWANESKNIGISNERLEFLGDSVLSIIISEY 62 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ +EG LS + +V + ++ ARE++L ++ + SI AD Sbjct: 63 LYKSRSDLEEGYLSKYRSEIVCEPSLARCAREIELGKYLLMGKGEEMTGGRNRESILADA 122 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 +E+LIAA+YLD ++ A V + + + + + SG RD KT+LQE YK Sbjct: 123 MEALIAAIYLDSDLKTASDIVLRLFDEIIKEVLSGLIYRDYKTKLQEVTQKMGSEKIIYK 182 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +T GPDH+ F + V + +GM SK+ AEQ AA E L + G+ Sbjct: 183 LTDEYGPDHNKMFVIEVYVGENRLGRGMGRSKKEAEQYAAMEALSKMGL 231 >gi|308048449|ref|YP_003912015.1| RNAse III [Ferrimonas balearica DSM 9799] gi|307630639|gb|ADN74941.1| RNAse III [Ferrimonas balearica DSM 9799] Length = 224 Score = 271 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+ +GY F + +LL +ALTH S + + ERLE+LGD +L +I+ L+ Sbjct: 1 MNNQKLTRLQDALGYQFKDIALLNQALTHRSAASQH---NERLEYLGDAVLSFVIAEALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+++ SLV T +++ REL L I++ K SI AD VE Sbjct: 58 LRFPKVAEGDMTRMRASLVKGVTLAELGRELALGDVIKLGPGELKSGGFRRESILADAVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+YLDGGIEV + + ++ R ++ G ++D KT LQE A+ PEY+V Sbjct: 118 AILGAVYLDGGIEVCKPLILRLYQARLDIIEPGIRQKDPKTRLQEHLQARKQPLPEYEVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ RFTV +S L P G S+R AEQ AA+ VL++ Sbjct: 178 SVEGDAHNQRFTVRCSVSALAEPMIGNGSSRRKAEQDAASRVLEQL 223 >gi|85712960|ref|ZP_01043999.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina baltica OS145] gi|85693198|gb|EAQ31157.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina baltica OS145] Length = 228 Score = 271 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + + LE+ IGY F +SLL++ALTH S + ERLEFLGD ILG++I+ LF Sbjct: 3 LPKPPLTQLEQIIGYRFERQSLLKQALTHRSA---HANHNERLEFLGDSILGVVIAEALF 59 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG+LS ++V + +++ ++ L ++ + K SI AD +E Sbjct: 60 SRFPKVAEGDLSRMRAAIVCGRSLARLGKKKGLGDYLSLGQGELKSGGYRRESILADAME 119 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++LD ++ V ++++ +K G ++D KT LQEW A+ PEY V Sbjct: 120 AIIGAIFLDSDMDTVKQVVLGWFEEQLETIKPGASQKDPKTRLQEWLQARQRPLPEYDVV 179 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ +FTV I GL P G S+R AEQ AA L++ Sbjct: 180 ATQGQAHNQQFTVTCTIEGLPEPLLGTGTSRRKAEQAAATSALEQL 225 >gi|21672530|ref|NP_660597.1| ribonuclease III [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009123|sp|Q8K9R1|RNC_BUCAP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|21623153|gb|AAM67808.1| ribonuclease III [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 226 Score = 271 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 126/228 (55%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + +++ +GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNHIVANKIQQILGYTFTHQELLKQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 HF EG++S +LV T +++A E DL ++++ K SI A+ VE Sbjct: 58 QHFPYIDEGDMSRMRATLVRGNTLAEIAYEFDLGEYLQLGQGELKSGGFRRESILANTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++YLD I+ + K++++R + G ++D KT LQE+ +K P Y + Sbjct: 118 ALIGSIYLDSNIKTVEELILKWYEKRLEKISPGDTQKDPKTRLQEYLQSKHLSLPSYFIV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ FT+ E+S L+ G S+R AEQ AA + L + G+ Sbjct: 178 EVYGEAHNQLFTIHCEVSTLSTSFIGKGTSRRKAEQDAARKALIKLGV 225 >gi|160946001|ref|ZP_02093227.1| hypothetical protein FAEPRAM212_03534 [Faecalibacterium prausnitzii M21/2] gi|158443732|gb|EDP20737.1| hypothetical protein FAEPRAM212_03534 [Faecalibacterium prausnitzii M21/2] gi|295103252|emb|CBL00796.1| RNAse III [Faecalibacterium prausnitzii SL3/3] Length = 224 Score = 271 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 86/222 (38%), Positives = 117/222 (52%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 LE IGY F N LLE ALTH+S ++ + + ERLEFLGD +L ++ + LF+ + Sbjct: 3 HQLETIIGYKFKNPELLEIALTHTSYANESRTPVKHNERLEFLGDSVLQIVSADYLFHAY 62 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ SLVS Q A+E+DL ++R+ + S+ +D E++I Sbjct: 63 ADRPEGDLTRIRASLVSESALFQFAQEIDLGEYLRLGRGEERCGGRTRPSVVSDAFEAVI 122 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AALYLDGG+EVA F+ + + D KT LQE Y V SGP Sbjct: 123 AALYLDGGMEVARKFILPFITE----GKHAEADYKTRLQEIVQQNPEERLSYVVESESGP 178 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 DHD F V V + A+G SK+AAEQ AA E LK G+ Sbjct: 179 DHDKHFVVAVRFNSDRVARGEGRSKKAAEQCAAKEALKLLGV 220 >gi|59712694|ref|YP_205470.1| ribonuclease III [Vibrio fischeri ES114] gi|197335272|ref|YP_002156886.1| ribonuclease III [Vibrio fischeri MJ11] gi|75431522|sp|Q5E314|RNC_VIBF1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|59480795|gb|AAW86582.1| RNase III [Vibrio fischeri ES114] gi|197316762|gb|ACH66209.1| ribonuclease III [Vibrio fischeri MJ11] Length = 223 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 117/227 (51%), Gaps = 7/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ LEK+IGY F + S L+ ALTH S + ++ ERLEFLGD IL +++ L+ Sbjct: 1 MNS-SLQRLEKKIGYQFKDESFLKLALTHRSANGTH---NERLEFLGDSILSFVVADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE L ++ + K SI AD VE Sbjct: 57 HRFPKVDEGDMSRMRATLVRGHTLAELGREFQLGDYLYLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD E + ++ R ++ G ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDTETVRGIILSWYNTRLESIEPGVSQKDPKTRLQEYLQGRRKPLPTYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224 G H+ FT+ ++GL P G S+R AEQ AA L + Sbjct: 177 KIKGEAHNQEFTIECIVAGLDKPVIGKGSSRRKAEQSAADIALGQLN 223 >gi|158320491|ref|YP_001512998.1| ribonuclease III [Alkaliphilus oremlandii OhILAs] gi|158140690|gb|ABW19002.1| Ribonuclease III [Alkaliphilus oremlandii OhILAs] Length = 241 Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 118/225 (52%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 + +K IGY F N S++ +ALTHSS ++ Y++ + ERLEFLGD +LG+++S + Sbjct: 9 EQIKEFQKIIGYQFKNLSIINEALTHSSYTNEYRKKQVQNNERLEFLGDSVLGIVVSEYI 68 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EGEL+ ++V + A+E+ L ++ + SI AD Sbjct: 69 YLKYKDLPEGELTKIRANVVCEPSLGNQAKEIKLGQYLLLGKGEEATGGRDRVSILADAF 128 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++I ALYLDGGI VAG F+ + G RD KT+LQE +K+ YKV Sbjct: 129 EAVIGALYLDGGIAVAGKFILDMLTRSIELAIEGNLFRDYKTDLQEILQSKYDEKISYKV 188 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH+ F V + + + G SK+ AEQ AA LK+ Sbjct: 189 VSEVGPDHNKTFEVEILLGEKSLGMGEGKSKKEAEQRAAKSALKK 233 >gi|255655258|ref|ZP_05400667.1| ribonuclease III [Clostridium difficile QCD-23m63] gi|296451243|ref|ZP_06892983.1| ribonuclease III [Clostridium difficile NAP08] gi|296880405|ref|ZP_06904368.1| ribonuclease III [Clostridium difficile NAP07] gi|296259849|gb|EFH06704.1| ribonuclease III [Clostridium difficile NAP08] gi|296428646|gb|EFH14530.1| ribonuclease III [Clostridium difficile NAP07] Length = 236 Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 119/226 (52%), Gaps = 5/226 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNH 62 E I Y F N+ + +ALTHSS S+ ++ ERLEFLGD +LG++IS LFN Sbjct: 10 NIQRFENVINYKFKNKEYILEALTHSSYSNENKKYNFNERLEFLGDSVLGIVISDYLFNE 69 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EGEL+ ++V ++ S+VA +++L + + TSI AD E++ Sbjct: 70 EANLPEGELTKLRANIVCEDSLSEVANDINLGVHMLLGRGEEATGGRHRTSILADAFEAV 129 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 IAA+YLDGG E A F+ + + S G RD KT LQE Y++ Sbjct: 130 IAAIYLDGGFESARQFILHHMENIIYDSRKGNIFRDYKTHLQEVLQGNGENNIWYRLIEE 189 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDH+ RF + V I+ G SK+ AEQ+AA LK++ +W Sbjct: 190 KGPDHNKRFVMEVGINEDVLGIGEGKSKKEAEQLAAKIALKKK-LW 234 >gi|313114998|ref|ZP_07800491.1| ribonuclease III [Faecalibacterium cf. prausnitzii KLE1255] gi|310622689|gb|EFQ06151.1| ribonuclease III [Faecalibacterium cf. prausnitzii KLE1255] Length = 224 Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats. Identities = 86/222 (38%), Positives = 118/222 (53%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 LE IGY F N LLE ALTH+S ++ + + ERLEFLGD +L ++ + LF+ + Sbjct: 3 HQLETIIGYKFKNPELLEIALTHTSYANESRTPVKHNERLEFLGDSVLQIVSADYLFHAY 62 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ SLVS Q A+E+DL ++R+ + S+ +D E+LI Sbjct: 63 ADRPEGDLTRIRASLVSEGALFQFAQEIDLGEYLRLGRGEERCGGRTRPSVVSDAFEALI 122 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AALYLDGG++VA +F+ + + D KT LQE Y V SGP Sbjct: 123 AALYLDGGMDVARSFILPFITE----GKHAEADYKTRLQEIVQQNPEERLSYVVESESGP 178 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 DHD F V V + A+G SK+AAEQ AA E LK G+ Sbjct: 179 DHDKHFVVAVRFNSDRVARGEGRSKKAAEQCAAKEALKLLGV 220 >gi|120555160|ref|YP_959511.1| ribonuclease III [Marinobacter aquaeolei VT8] gi|120325009|gb|ABM19324.1| RNAse III [Marinobacter aquaeolei VT8] Length = 229 Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 119/231 (51%), Gaps = 7/231 (3%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 MS+ L++RIGY F L ALTH S + ++ ERLEFLGD I+ ++I+ L Sbjct: 1 MSSQPDLDQLQRRIGYQFKEPERLLLALTHRSFGN---QNNERLEFLGDSIVNMVIAEYL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + HF+ A+EG+LS +V T +++ RE L ++R+ S K SI AD V Sbjct: 58 YLHFEKAREGQLSRLRARMVKGVTLAEIGREFQLGQYLRLGSGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ES+I A+YLD V ++++QR L ++D KT LQE+ ++ P Y+V Sbjct: 118 ESIIGAIYLDSDFHTCRAQVLRWFEQRLANLDIQDTQKDPKTRLQEYLQSRQFPLPRYEV 177 Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGIWT 227 G H+ F V + L G S+R AEQ AA LK+ G+ Sbjct: 178 ISVDGEAHNQTFHVSCALPSLDRKTTGTGSSRRVAEQQAARNALKQLGVEN 228 >gi|150390513|ref|YP_001320562.1| ribonuclease III [Alkaliphilus metalliredigens QYMF] gi|149950375|gb|ABR48903.1| Ribonuclease III [Alkaliphilus metalliredigens QYMF] Length = 239 Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 116/220 (52%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 E+ I Y F ++ LL++ALTHSS ++ + + ERLEFLGD +LG++IS +F + Sbjct: 14 FEEMIQYQFKDKQLLKEALTHSSYANESKVKKIKHNERLEFLGDSVLGIIISDYIFKKYT 73 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ ++V A +++L F+R+ SI AD E+LI Sbjct: 74 HLPEGDLTKVRANVVCEPALGSCATKINLGGFLRLGRGEEVSGGRQRESILADAFEALIG 133 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLDGG+ +A TFV + ++ G RD KT LQE +K Y+V SG Sbjct: 134 ALYLDGGMVIAQTFVLNHLIDSVEQATKGSLFRDYKTYLQELLQSKHSERITYQVIKESG 193 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 PDH F V V + GM SK+ AEQ AA E +++ Sbjct: 194 PDHSKIFDVEVLLGEQLLGHGMGKSKKEAEQRAAKEAVEK 233 >gi|255746868|ref|ZP_05420813.1| ribonuclease III [Vibrio cholera CIRS 101] gi|262162033|ref|ZP_06031049.1| ribonuclease III [Vibrio cholerae INDRE 91/1] gi|255735270|gb|EET90670.1| ribonuclease III [Vibrio cholera CIRS 101] gi|262028282|gb|EEY46939.1| ribonuclease III [Vibrio cholerae INDRE 91/1] Length = 221 Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 117/220 (53%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + + ERLEFLGD IL +I+ L+ F Sbjct: 2 NKLTSKLGYTFKETELLNLALTHRSANGKH---NERLEFLGDSILSFVIADELYRRFPKV 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 59 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118 Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A + V +++ R +K G ++D KT LQE+ + P Y VT G Sbjct: 119 YLDSDLETARSIVLEWYHGRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 218 >gi|315652049|ref|ZP_07905050.1| ribonuclease III [Eubacterium saburreum DSM 3986] gi|315485696|gb|EFU76077.1| ribonuclease III [Eubacterium saburreum DSM 3986] Length = 228 Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 118/228 (51%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ + L++ +GY + NR LL++ALTHSS ++ +Q S ERLEFLGD +L L+ S Sbjct: 1 MNN-NLNELQELLGYEYKNRELLKQALTHSSYANEHQLGKNGSNERLEFLGDAVLELVSS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 + + EGEL+ S V A + L+ FIR+ F SI + Sbjct: 60 EFFYEVYPDKPEGELTKIRASFVCEPALVDCAGNIRLSEFIRLGKGEEHTGGRFRPSIIS 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D E++I ++YLDGG A + K+ ++ F D+KT LQE ++ EY Sbjct: 120 DTFEAVIGSIYLDGGFANAKEVILKFILNGY-ENKVFFYDSKTILQEIIQSQDSRPVEYC 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + GPDH +F V V I+G G SK++AEQ AA E LK+ G Sbjct: 179 LLSEEGPDHLKKFVVAVNINGQVAGVGEGVSKKSAEQAAAYEALKKLG 226 >gi|257440564|ref|ZP_05616319.1| ribonuclease III [Faecalibacterium prausnitzii A2-165] gi|257196887|gb|EEU95171.1| ribonuclease III [Faecalibacterium prausnitzii A2-165] Length = 224 Score = 271 bits (693), Expect = 7e-71, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 118/222 (53%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 LE IGY F N LLE ALTH+S ++ + + ERLEFLGD +L ++ + LF+ + Sbjct: 3 HQLETIIGYKFKNPKLLETALTHTSYANESRTPVQHNERLEFLGDSVLQIVSADYLFHAY 62 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +SLVS Q A+E++L ++R+ + S+ +D E++I Sbjct: 63 ADRPEGDLTRIRSSLVSEGALFQFAQEINLGEYLRLGRGEERCGGRTRPSVVSDAFEAVI 122 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AALYLDGG+EVA +F+ + + D KT LQE Y V SGP Sbjct: 123 AALYLDGGMEVAKSFILPFITE----GKHAEADYKTRLQEIVQQNPEERLSYVVEQESGP 178 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 DHD F V V + A+G SK+ AEQ AA E LK G+ Sbjct: 179 DHDKHFVVAVRFNSDKVARGEGRSKKMAEQHAAREALKLLGV 220 >gi|83644632|ref|YP_433067.1| ribonuclease III [Hahella chejuensis KCTC 2396] gi|123534042|sp|Q2SL32|RNC_HAHCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|83632675|gb|ABC28642.1| ribonuclease III [Hahella chejuensis KCTC 2396] Length = 226 Score = 271 bits (693), Expect = 7e-71, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+A + L++ +GY F +LL ALTH S + ERLEFLGD +L +I+ LF Sbjct: 1 MTA-KLERLQRALGYTFKEPALLTLALTHRSFG---GRNNERLEFLGDSVLNFIIADYLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F+ A+EG+LS +V T +++ARE DL ++R+ S K SI AD +E Sbjct: 57 GRFEEAREGQLSRLRARMVKGVTLAEIAREFDLGEYLRLGSGEMKSGGFRRESILADALE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 S+I A+YLD G EV V +++ R L ++D+KT LQE+ A+ P Y+V Sbjct: 117 SIIGAIYLDAGFEVCADRVLNWFEARLQKLNLKDTQKDSKTRLQEYLQARQLNLPRYEVI 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225 G H F V EI GL+ A +G S+R AEQ AA + L G+ Sbjct: 177 SVQGEAHAQTFHVRCEIDGLSDATEGTGSSRRVAEQKAAKQALLALGV 224 >gi|27904735|ref|NP_777861.1| ribonuclease III [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29427422|sp|P59476|RNC_BUCBP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|27904132|gb|AAO26966.1| ribonuclease III [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 226 Score = 271 bits (693), Expect = 7e-71, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 121/228 (53%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L+K +GY F + LL +ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNHTVIQKLQKILGYTFIKKDLLIQALTHRSANSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++A E DL ++++ K SI A+ VE Sbjct: 58 HCFPHVNEGDMSRMRATLVRGHTLAKIAYEFDLGDYLQLGQGELKSGGFRRESILANTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI +++LD ++ + K++K R A+ ++D KT LQE+ +K P Y V Sbjct: 118 ALIGSIFLDSNLKTIEKLILKWYKNRLKAINPSDTQKDPKTRLQEYLQSKHLPLPSYLVE 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ FT+ EISG+ G+ S+R AEQ AA L + GI Sbjct: 178 QVYGEAHNQLFTIYCEISGINEKTIGIGSSRRKAEQEAAQNALIKLGI 225 >gi|148560325|ref|YP_001258645.1| ribonuclease III [Brucella ovis ATCC 25840] gi|306837522|ref|ZP_07470397.1| ribonuclease III [Brucella sp. NF 2653] gi|306842074|ref|ZP_07474746.1| ribonuclease III [Brucella sp. BO2] gi|148371582|gb|ABQ61561.1| ribonuclease III [Brucella ovis ATCC 25840] gi|306287824|gb|EFM59247.1| ribonuclease III [Brucella sp. BO2] gi|306407414|gb|EFM63618.1| ribonuclease III [Brucella sp. NF 2653] Length = 257 Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 119/220 (54%), Positives = 156/220 (70%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+R G+ F N LE+ALTHSS+ + +YERLEFLGDR+LGL ++ +LF F A Sbjct: 32 SILEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEA 91 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELSVR N+LV+AETC+ +A E+ LA I SD++ + +++ADVVE+LIA + Sbjct: 92 SEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATI 151 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG+E A +F+ +YWK+R+L++G RRDAKTELQEWAH + V P Y + RSGPDHD Sbjct: 152 YLDGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHD 211 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 P F V V + G AP +G SKR AEQ AA +L REG+W Sbjct: 212 PLFLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 251 >gi|306845262|ref|ZP_07477838.1| ribonuclease III [Brucella sp. BO1] gi|306274421|gb|EFM56228.1| ribonuclease III [Brucella sp. BO1] Length = 257 Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 119/220 (54%), Positives = 156/220 (70%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+R G+ F N LE+ALTHSS+ + +YERLEFLGDR+LGL ++ +LF F A Sbjct: 32 SILEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEA 91 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELSVR N+LV+AETC+ +A E+ LA I SD++ + +++ADVVE+LIA + Sbjct: 92 SEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATI 151 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG+E A +F+ +YWK+R+L++G RRDAKTELQEWAH + V P Y + RSGPDHD Sbjct: 152 YLDGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHD 211 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 P F V V + G AP +G SKR AEQ AA +L REG+W Sbjct: 212 PLFLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 251 >gi|15616869|ref|NP_240082.1| ribonuclease III [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681624|ref|YP_002468010.1| ribonuclease III [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682181|ref|YP_002468565.1| ribonuclease III [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471312|ref|ZP_05635311.1| ribonuclease III [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11134313|sp|P57346|RNC_BUCAI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807240|sp|B8D951|RNC_BUCA5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807241|sp|B8D7F5|RNC_BUCAT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|25289216|pir||H84959 ribonuclease III (EC 3.1.26.3) [imported] - Buchnera sp. (strain APS) gi|10038933|dbj|BAB12968.1| ribonuclease III [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621914|gb|ACL30070.1| ribonuclease III [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624467|gb|ACL30622.1| ribonuclease III [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085996|gb|ADP66078.1| ribonuclease III [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086571|gb|ADP66652.1| ribonuclease III [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087152|gb|ADP67232.1| ribonuclease III [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087686|gb|ADP67765.1| ribonuclease III [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 226 Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 124/228 (54%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + ++K +GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNHIVTKKIQKVLGYTFTHKDLLKQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 HF EG++S +LV T +++A E DL ++++ K SI A+ VE Sbjct: 58 QHFPYIDEGDMSRMRATLVRGNTLAEIAYEFDLGEYLKLGQGELKSGGFRRESILANTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++YLD I+ + K++++R + G ++D KT LQE+ +K P Y + Sbjct: 118 ALIGSIYLDSNIKTVEELILKWYEKRLEKISPGDTQKDPKTRLQEYLQSKHLSLPLYFIV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ FT+ +IS + G S+R AEQ AA + L + G+ Sbjct: 178 EVYGEAHNQLFTIHCKISTISEYLIGTGSSRRKAEQDAAQKALIKLGV 225 >gi|159184588|ref|NP_354058.2| ribonuclease III [Agrobacterium tumefaciens str. C58] gi|22654057|sp|Q8UGK2|RNC_AGRT5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|159139890|gb|AAK86843.2| ribonuclease III [Agrobacterium tumefaciens str. C58] Length = 239 Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 129/226 (57%), Positives = 164/226 (72%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +SA S LE IGY F ++ L++ALTH+S + +YERLEFLGDR+LGL ++ LLF Sbjct: 7 LSADEISRLEALIGYEFKEKARLDRALTHASARSAAAGNYERLEFLGDRVLGLCVAELLF 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F +A EGELSVR N LVSAE+C+ + E+ L +FIR SD++K M +++ADVVE Sbjct: 67 STFRNASEGELSVRLNQLVSAESCAAIGDEMGLHNFIRTGSDVKKLTGKAMLNVRADVVE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIA LYLDGG+E + F+ KYW+ RA RRDAKTELQEWAHA+F TP Y+V R Sbjct: 127 SLIATLYLDGGLEASRKFILKYWQGRATSVDAGRRDAKTELQEWAHARFAATPAYRVDDR 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDP FTV VEI G+ P G++ SKRAAEQVAA +L+REG+W Sbjct: 187 SGPDHDPSFTVTVEIPGVKPETGVERSKRAAEQVAATRLLEREGVW 232 >gi|319957798|ref|YP_004169061.1| rnase iii [Nitratifractor salsuginis DSM 16511] gi|319420202|gb|ADV47312.1| RNAse III [Nitratifractor salsuginis DSM 16511] Length = 226 Score = 270 bits (692), Expect = 9e-71, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 120/222 (54%), Gaps = 4/222 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 Y LE+R+GY F N L+ +ALTH S Y + ERLEFLGD +L L++ LF+ F Sbjct: 2 ENYHELERRLGYEFKNPQLIVEALTHKSYKKPY--NNERLEFLGDAVLDLIVGEFLFHKF 59 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG LS SLV+ + +AR +DL +I +S + S+ ++ E++I Sbjct: 60 PQSDEGVLSKIRASLVNESGFATLARAIDLGRYIYLSPAEENNQGRSKPSLLSNAFEAVI 119 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YL+ G+E A + V + + + +D KT LQE A GVTP+Y++ S Sbjct: 120 GAIYLEAGLENARSIVVRLLDETYPRIDLDTLCKDYKTALQELTQATHGVTPDYEMIGSS 179 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH F V V++ G A SK+AA+Q AA L++ Sbjct: 180 GPDHRKEFEVAVKLDGETIASAKGRSKKAAQQKAAEIALQKL 221 >gi|134299915|ref|YP_001113411.1| ribonuclease III [Desulfotomaculum reducens MI-1] gi|189043307|sp|A4J683|RNC_DESRM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|134052615|gb|ABO50586.1| RNAse III [Desulfotomaculum reducens MI-1] Length = 246 Score = 270 bits (692), Expect = 9e-71, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 113/223 (50%), Gaps = 6/223 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62 + L+ R+G+ + N +LL +ALTHSS H + +RLEFLGD +L L+IS L+ Sbjct: 9 NRLKTRLGFKWHNPTLLIQALTHSSCVHENRGHGLCHNQRLEFLGDAVLELIISEHLYKM 68 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EGEL+ S V + ++VAR LDL +R+ + SI AD E+L Sbjct: 69 FPDRTEGELTKMRASSVCEPSLAKVARGLDLGRCLRMGRGEERSGGRERPSILADAFEAL 128 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A+YLD G+E++ FV +G+ RD KTELQE Y + Sbjct: 129 LGAIYLDQGLEISRHFVLNCLSSIIDDVVAGRLDRDYKTELQEILQQSSPDPLTYTIMDE 188 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDHD FT V G +G SK+ AEQ AA + + Sbjct: 189 SGPDHDKTFTAGVIYKGKVIGKGSGHSKKEAEQQAAKDAFQHL 231 >gi|260588638|ref|ZP_05854551.1| ribonuclease III [Blautia hansenii DSM 20583] gi|260541113|gb|EEX21682.1| ribonuclease III [Blautia hansenii DSM 20583] Length = 263 Score = 270 bits (692), Expect = 9e-71, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 5/226 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIST 57 ++ ++ LEK+IGY F N LL ALTHSS ++ + +E+ ERLEFLGD +L L S Sbjct: 30 NSKKFLELEKKIGYEFENFDLLVNALTHSSYANEHHIAYKENNERLEFLGDAVLELTSSE 89 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF + EG+L+ + S+V T + A+E+ L ++ + SI +D Sbjct: 90 FLFYQYADLPEGKLTKKRASIVCEPTLALCAKEISLGDYLLLGKGEEATGGRNRNSIISD 149 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A+YLDGG A FV KY +++ + D+KT LQE A++ +Y + Sbjct: 150 AMEALIGAIYLDGGFANAKEFVHKYIL-NDIENKQLFYDSKTTLQEIVQAQYEDDVKYVL 208 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH+ F V + +G +K+AAEQ AA +K+ Sbjct: 209 VKEEGPDHNKSFYVEALLGDKKLGEGCGHTKKAAEQQAAYCAIKKL 254 >gi|220931875|ref|YP_002508783.1| Ribonuclease III [Halothermothrix orenii H 168] gi|219993185|gb|ACL69788.1| Ribonuclease III [Halothermothrix orenii H 168] Length = 236 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 77/217 (35%), Positives = 110/217 (50%), Gaps = 6/217 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 F + SLL+KA+TH S H E ERLEFLGD +L ++IST L+ +F EG Sbjct: 18 NIRFNDISLLQKAVTHKSFVHEKSDPDLEDNERLEFLGDSVLSIVISTYLYKNFPEYNEG 77 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 EL+ +VS+ + AREL L +I + + SI AD +E++I A+YLD Sbjct: 78 ELAKMRAYIVSSSHLACKARELGLGKYILMGKGEELNGGRERESILADTLEAVIGAIYLD 137 Query: 130 GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G + ++K L G RD KT LQE+ +Y + GPDH+ Sbjct: 138 QGFNTITDLLINFFKDDVKKLDQGNIIRDYKTYLQEFIQKDGSCEIKYNIINEYGPDHNK 197 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +F V V+++G +G SK+ AEQ AA + L G Sbjct: 198 KFEVGVKVNGKELGRGTGFSKKEAEQKAAKDALSNLG 234 >gi|153009954|ref|YP_001371169.1| ribonuclease III [Ochrobactrum anthropi ATCC 49188] gi|151561842|gb|ABS15340.1| Ribonuclease III [Ochrobactrum anthropi ATCC 49188] Length = 234 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 115/228 (50%), Positives = 157/228 (68%), Gaps = 2/228 (0%) Query: 1 MSALRYST--LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 M++ + LE+R G+ F N L++ALTHSS+ + +YERLEFLGDR+LGL ++ + Sbjct: 1 MASANQAAAILEERTGHRFLNLKRLDRALTHSSVQAPSRANYERLEFLGDRVLGLTVAEM 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF+ F A EGELSVR N+LV+AETC+ +A E+ LA+ I SD++ + +++ADV Sbjct: 61 LFDEFPDASEGELSVRLNALVNAETCAAIADEIGLANLIHTGSDIKSLNDKRLLNVRADV 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 VE+LIA +YLDGG+E FV +YW++R+L++G RRDAKTELQEWAH + V P Y + Sbjct: 121 VEALIATIYLDGGLEAVRPFVKRYWEKRSLQTGAARRDAKTELQEWAHQQGNVHPSYAII 180 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 R+GPDHDP F V V + G A G SKR AEQ AA +L REG+W Sbjct: 181 SRTGPDHDPLFAVEVTVKGFATETGEGRSKRIAEQNAAEAMLYREGVW 228 >gi|309389054|gb|ADO76934.1| RNAse III [Halanaerobium praevalens DSM 2228] Length = 237 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 114/228 (50%), Gaps = 6/228 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57 + + EK + F N+ LLE+ALTH S + + + ERLEFLGD +L L IST Sbjct: 6 NKRKTLKFEKSLDLNFNNKFLLERALTHKSYPNENRHLNLKDNERLEFLGDSVLSLSIST 65 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +FN F EG+L+ +VSA ++ A+ ++L ++ + SI AD Sbjct: 66 YIFNKFSDFPEGDLAKMRAVIVSAPILAEAAKRINLGQYLFLGKGEEMTGGRERDSILAD 125 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY 175 +E++ ALYLD +V F+ + K + +G +D KT LQE PEY Sbjct: 126 TMEAIFGALYLDQSFKVVSDFILELLKVDIINVAAGNHIQDYKTMLQEVIQDMGNFRPEY 185 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V GPDH+ F V V+++ + G SK+ AEQ AA L + Sbjct: 186 EVIDEEGPDHNKTFIVAVKMNEESLGSGQGSSKKEAEQEAAKVALDKL 233 >gi|331082011|ref|ZP_08331139.1| ribonuclease III [Lachnospiraceae bacterium 6_1_63FAA] gi|330405606|gb|EGG85136.1| ribonuclease III [Lachnospiraceae bacterium 6_1_63FAA] Length = 236 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 5/226 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIST 57 ++ ++ LEK+IGY F N LL ALTHSS ++ + +E+ ERLEFLGD +L L S Sbjct: 3 NSKKFLELEKKIGYEFENFDLLVNALTHSSYANEHHIAYKENNERLEFLGDAVLELTSSE 62 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF + EG+L+ + S+V T + A+E+ L ++ + SI +D Sbjct: 63 FLFYQYADLPEGKLTKKRASIVCEPTLALCAKEISLGDYLLLGKGEEATGGRNRNSIISD 122 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A+YLDGG A FV KY +++ + D+KT LQE A++ +Y + Sbjct: 123 AMEALIGAIYLDGGFANAKEFVHKYIL-NDIENKQLFYDSKTTLQEIVQAQYEDDVKYVL 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH+ F V + +G +K+AAEQ AA +K+ Sbjct: 182 VKEEGPDHNKSFYVEALLGDKKLGEGCGHTKKAAEQQAAYCAIKKL 227 >gi|325292414|ref|YP_004278278.1| ribonuclease III [Agrobacterium sp. H13-3] gi|325060267|gb|ADY63958.1| ribonuclease III [Agrobacterium sp. H13-3] Length = 237 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 129/226 (57%), Positives = 165/226 (73%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +S S LE IGY F ++ L++ALTH+S + +YERLEFLGDR+LGL ++ LLF Sbjct: 7 LSIAEISRLEALIGYEFKEKARLDRALTHASARSAAAGNYERLEFLGDRVLGLCVAELLF 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F +A EGELSVR N LVSAE+C+ + E+ L +FIR SD++K M +++ADVVE Sbjct: 67 STFRNASEGELSVRLNQLVSAESCAAIGDEMGLHNFIRTGSDVKKLTGKAMLNVRADVVE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIA LYLDGG+E + F+ KYW+ RA + RRDAKTELQEWAHA+F VTP Y+V R Sbjct: 127 SLIATLYLDGGLEASRKFILKYWQGRATRVDAGRRDAKTELQEWAHARFAVTPAYRVDDR 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDP FTV VEI G+ P G++ SKRAAEQVAA +L+REG+W Sbjct: 187 SGPDHDPSFTVTVEIPGVKPETGVERSKRAAEQVAATRLLEREGVW 232 >gi|307256562|ref|ZP_07538343.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864972|gb|EFM96874.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 243 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++GY F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 18 MNNMQLERLQKKLGYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 75 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 135 AIIAAIYLDAGMDKAIAQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194 Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 240 >gi|307245400|ref|ZP_07527488.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306853741|gb|EFM85958.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 243 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++GY F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 18 MNNMQLERLQKKLGYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 75 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 135 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194 Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 240 >gi|114706260|ref|ZP_01439162.1| ribonuclease III [Fulvimarina pelagi HTCC2506] gi|114538121|gb|EAU41243.1| ribonuclease III [Fulvimarina pelagi HTCC2506] Length = 234 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 116/223 (52%), Positives = 154/223 (69%), Gaps = 2/223 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + LEKRIG F++ L++ALTHSS S SYERLEFLGDR+LGL+++ LF F Sbjct: 8 LAELEKRIGVRFSDHDRLQRALTHSSFRSSKGDGRSYERLEFLGDRVLGLVVADKLFEMF 67 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +A EGELS+R NSLV+AETC+ VA E+ L F+R DLRK S SI+AD++ESLI Sbjct: 68 PNADEGELSLRLNSLVNAETCAAVADEIGLYEFVRQGGDLRKLAASRTKSIRADLMESLI 127 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AA+YL+ G++ A F++ +W +R KS RRD KT LQEWAH + P+Y+V RSGP Sbjct: 128 AAIYLNSGLDDARAFIESHWGERLNKSVAARRDPKTALQEWAHQRGPEPPKYEVVDRSGP 187 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 DH+P+F + V I+G+ P++G SKR AEQ AA +L RE +W Sbjct: 188 DHNPKFRIKVSIAGVDPSEGEGSSKRLAEQSAATAMLIRENVW 230 >gi|239831496|ref|ZP_04679825.1| ribonuclease III [Ochrobactrum intermedium LMG 3301] gi|239823763|gb|EEQ95331.1| ribonuclease III [Ochrobactrum intermedium LMG 3301] Length = 234 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 113/228 (49%), Positives = 156/228 (68%), Gaps = 2/228 (0%) Query: 1 MSALRYST--LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 M++ + LE+R G+ F N L++ALTHSS+ + +YERLEFLGDR+LGL ++ + Sbjct: 1 MASANQAAAILEERTGHRFLNVKRLDRALTHSSVQAPSRANYERLEFLGDRVLGLTVAEM 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L++ F A EGELSVR N+LV+AETC+ +A E+ LA I SD++ + +++ADV Sbjct: 61 LYDEFPEASEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADV 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 VE+LIA +YLDGG++ FV ++WK+R+L++G RRDAKTELQEWAH + V P Y + Sbjct: 121 VEALIATIYLDGGLDAVRPFVKRFWKKRSLQTGAARRDAKTELQEWAHQQGNVHPAYSII 180 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 R+GPDHDP F V V + G A G SKR AEQ AA +L REG+W Sbjct: 181 SRTGPDHDPLFMVEVTVKGFAAETGEGRSKRIAEQHAAEAMLYREGVW 228 >gi|310658889|ref|YP_003936610.1| ribonuclease 3 [Clostridium sticklandii DSM 519] gi|308825667|emb|CBH21705.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Clostridium sticklandii] Length = 229 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 122/230 (53%), Gaps = 7/230 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M + Y L+K+I Y F + LL++ALTHSS S+ Y++ + ERLEFLGD ILGL+IS Sbjct: 1 MKSKSY-ELQKKINYEFQDLKLLKEALTHSSYSNEYKKIKNRNNERLEFLGDSILGLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF EGEL+ ++V + +A+ + L ++ + SI A Sbjct: 60 NYLFRLKKELPEGELTKIRAAIVCERSLKDIAKSIHLGEYLYLGKGEESTGGRTRDSILA 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPE 174 D E+LIAA+YLDGG A FV ++ ++ GK RD KT+LQE Sbjct: 120 DATEALIAAIYLDGGFRKATDFVLEHMGDIISQAIQGKIMRDYKTQLQELIQKDNKENII 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 YK+ + GPDHD F + V + G+ SK+ AEQ AA + +++E Sbjct: 180 YKLVDQLGPDHDKTFKMNVFLGEKLIGTGIGKSKKEAEQEAAKDAMEKEN 229 >gi|291550077|emb|CBL26339.1| RNAse III [Ruminococcus torques L2-14] Length = 228 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 81/220 (36%), Positives = 115/220 (52%), Gaps = 5/220 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 R LE++IGY F ++SL+E+AL HSS ++ E ERLEFLGD +L L+ S LF Sbjct: 3 RVKELEQKIGYVFKDKSLIERALMHSSYTNEKHLKKYECNERLEFLGDAVLELVSSAYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N F EGEL+ S+V + + AR++ L ++ + SI +D +E Sbjct: 63 NEFPKVSEGELTKTRASMVCEPSLAMCARDIGLGDYLLLGKGEEATGGRKRDSITSDAME 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI A+YLDGG A F+ + L+ K D+KT LQE A Y++ Sbjct: 123 ALIGAIYLDGGFTNAKEFIHHFILT-DLEDKKLFYDSKTILQEIVQANMTGNVSYELIDE 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDH+ F V I A +G SK++AEQ AA E + Sbjct: 182 QGPDHNKIFEVEARIGRKAWGRGKGSSKKSAEQQAAYEAI 221 >gi|209695943|ref|YP_002263873.1| ribonuclease III [Aliivibrio salmonicida LFI1238] gi|208009896|emb|CAQ80209.1| ribonuclease III (RNase III) [Aliivibrio salmonicida LFI1238] Length = 223 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 75/218 (34%), Positives = 114/218 (52%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE++IGY F + L+ ALTH S + ++ ERLEFLGD IL +++ L++ F Sbjct: 5 LQRLERKIGYKFNDEGFLKLALTHRSANGTH---NERLEFLGDSILSFVVADELYHRFPK 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG++S +LV T +++ RE +L ++ + K SI AD VE++I Sbjct: 62 VDEGDMSRMRATLVRGHTLAELGREFELGDYLFLGPGELKSGGFRRDSILADAVEAIIGG 121 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD EV + ++K R ++ G ++D KT LQE+ + P Y VT G Sbjct: 122 IYLDSDTEVIRRIILAWYKTRLDSIEPGISQKDPKTRLQEYLQGRRKPLPTYTVTKIKGE 181 Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220 H+ FT+ ++GL P G S+R AEQ AA L Sbjct: 182 AHNQEFTIECIVAGLDKPVIGKGSSRRKAEQSAADIAL 219 >gi|261211555|ref|ZP_05925843.1| ribonuclease III [Vibrio sp. RC341] gi|260839510|gb|EEX66136.1| ribonuclease III [Vibrio sp. RC341] Length = 221 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 116/220 (52%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + + ERLEFLGD IL +I+ L+ F Sbjct: 2 NKLTSKLGYTFKETELLNLALTHRSANGKH---NERLEFLGDSILSFVIADELYRRFPKV 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 59 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118 Query: 127 YLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A V +++ + +K G ++D KT LQE+ + P Y VT G Sbjct: 119 YLDSELETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 218 >gi|326791395|ref|YP_004309216.1| ribonuclease III [Clostridium lentocellum DSM 5427] gi|326542159|gb|ADZ84018.1| ribonuclease III [Clostridium lentocellum DSM 5427] Length = 240 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 112/228 (49%), Gaps = 7/228 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57 ++ +++++ Y F N +LLE+ALTHSS ++ ++ + ERLEFLGD IL L+IS Sbjct: 10 KSIVLDEMQRKLSYTFTNSNLLEEALTHSSYANEHRNERVKDNERLEFLGDAILDLIISE 69 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF EG+LS S+V + +++AR + L +I + SI AD Sbjct: 70 YLFKKHPEMPEGDLSKIRASIVCEASLAKMARFIGLGEYILLGKGEEMTGGRERASILAD 129 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 E+L AL+LDGG A F+ ++ D KT LQE Sbjct: 130 GFEALTGALFLDGGFNEAKCFLTDTLIAQVEQVASLEDLYTDYKTLLQECIQKVSNAPIH 189 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+V GPDHD F V V ++ +G+ SK+ AEQ AA + L Sbjct: 190 YEVVGEEGPDHDKYFYVEVYHDTISLGRGIGKSKKEAEQDAAKKALNN 237 >gi|116628032|ref|YP_820651.1| ribonuclease III [Streptococcus thermophilus LMD-9] gi|122267372|sp|Q03K17|RNC_STRTD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116101309|gb|ABJ66455.1| RNAse III [Streptococcus thermophilus LMD-9] gi|312278628|gb|ADQ63285.1| Ribonuclease 3 [Streptococcus thermophilus ND03] Length = 229 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 115/230 (50%), Gaps = 8/230 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ L LE+ G F+ + LLE A TH+S ++ ++ ERLEFLGD L L+IS Sbjct: 1 MNQLE-QKLEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+N + + EGE+S +++V E+ + + +IR+ K +I Sbjct: 60 VYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + ALYLD G+ F+++ + ++ G F R D KT LQE V Sbjct: 120 DLWEAFLGALYLDQGLPAVEKFLNQVMIPQ-VEKGNFDRVIDYKTALQERLQVNGKVDIT 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 Y V SGP H FT+ V + G + G SK+ AEQ AA L++ G Sbjct: 179 YTVIDESGPAHAKEFTMQVAVDGKELSTGFGKSKKLAEQAAAKSALEQLG 228 >gi|327399771|ref|YP_004340640.1| Ribonuclease 3 [Hippea maritima DSM 10411] gi|327182400|gb|AEA34581.1| Ribonuclease 3 [Hippea maritima DSM 10411] Length = 234 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 80/218 (36%), Positives = 123/218 (56%), Gaps = 2/218 (0%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 E+R+GY F N+ LL++ALTH S +S ERLEFLGD +L L+++ L N++ + Sbjct: 12 EFEERLGYTFKNKELLKRALTHRSYVKDKAKSNERLEFLGDAVLELVVTEFLINNYKNID 71 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS + V+ +T S++AR+L+L+ I V +K+ + SI D E+++ A+Y Sbjct: 72 EGKLSKIRAASVNTKTLSKLARKLELSDQILVGRSEKKEGITNNDSILEDAFEAIVGAIY 131 Query: 128 LDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDGG++ A FV+ K + D KT LQE +FG PEY + G +H Sbjct: 132 LDGGLDKARRFVEHMLKDTIIAIVENGIIFDYKTHLQEITQKQFGCLPEYVIVKEDGQEH 191 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + F V I G+ G+ SK+ AE+ AA E +K+ Sbjct: 192 NKTFYCDVMIKGVKYGFGIGKSKKDAEKNAAKEAVKKL 229 >gi|17987570|ref|NP_540204.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M] gi|23501548|ref|NP_697675.1| ribonuclease III [Brucella suis 1330] gi|62289621|ref|YP_221414.1| ribonuclease III [Brucella abortus bv. 1 str. 9-941] gi|82699549|ref|YP_414123.1| ribonuclease III [Brucella melitensis biovar Abortus 2308] gi|161618631|ref|YP_001592518.1| ribonuclease III [Brucella canis ATCC 23365] gi|163842933|ref|YP_001627337.1| ribonuclease III [Brucella suis ATCC 23445] gi|189023875|ref|YP_001934643.1| ribonuclease III [Brucella abortus S19] gi|225852182|ref|YP_002732415.1| ribonuclease III [Brucella melitensis ATCC 23457] gi|254688937|ref|ZP_05152191.1| ribonuclease III [Brucella abortus bv. 6 str. 870] gi|254693419|ref|ZP_05155247.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya] gi|254697072|ref|ZP_05158900.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59] gi|254701449|ref|ZP_05163277.1| ribonuclease III [Brucella suis bv. 5 str. 513] gi|254703995|ref|ZP_05165823.1| ribonuclease III [Brucella suis bv. 3 str. 686] gi|254707631|ref|ZP_05169459.1| ribonuclease III [Brucella pinnipedialis M163/99/10] gi|254709787|ref|ZP_05171598.1| ribonuclease III [Brucella pinnipedialis B2/94] gi|254713789|ref|ZP_05175600.1| ribonuclease III [Brucella ceti M644/93/1] gi|254717154|ref|ZP_05178965.1| ribonuclease III [Brucella ceti M13/05/1] gi|254718802|ref|ZP_05180613.1| ribonuclease III [Brucella sp. 83/13] gi|254729968|ref|ZP_05188546.1| ribonuclease III [Brucella abortus bv. 4 str. 292] gi|256031277|ref|ZP_05444891.1| ribonuclease III [Brucella pinnipedialis M292/94/1] gi|256044358|ref|ZP_05447262.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1] gi|256060789|ref|ZP_05450951.1| ribonuclease III [Brucella neotomae 5K33] gi|256113201|ref|ZP_05454069.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether] gi|256159387|ref|ZP_05457169.1| ribonuclease III [Brucella ceti M490/95/1] gi|256254685|ref|ZP_05460221.1| ribonuclease III [Brucella ceti B1/94] gi|256257185|ref|ZP_05462721.1| ribonuclease III [Brucella abortus bv. 9 str. C68] gi|256264307|ref|ZP_05466839.1| ribonuclease III family protein [Brucella melitensis bv. 2 str. 63/9] gi|256369099|ref|YP_003106607.1| ribonuclease III [Brucella microti CCM 4915] gi|260168415|ref|ZP_05755226.1| ribonuclease III [Brucella sp. F5/99] gi|260883452|ref|ZP_05895066.1| ribonuclease III [Brucella abortus bv. 9 str. C68] gi|261221863|ref|ZP_05936144.1| ribonuclease III [Brucella ceti B1/94] gi|261324780|ref|ZP_05963977.1| ribonuclease III [Brucella neotomae 5K33] gi|265988360|ref|ZP_06100917.1| ribonuclease III [Brucella pinnipedialis M292/94/1] gi|265990773|ref|ZP_06103330.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1] gi|265994609|ref|ZP_06107166.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether] gi|265997827|ref|ZP_06110384.1| ribonuclease III [Brucella ceti M490/95/1] gi|54039241|sp|P66665|RNC_BRUSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54041613|sp|P66664|RNC_BRUME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|75497081|sp|Q57E81|RNC_BRUAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101615|sp|Q2YN02|RNC_BRUA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043295|sp|A9MA35|RNC_BRUC2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043296|sp|B0CKY7|RNC_BRUSI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238691497|sp|B2SAD9|RNC_BRUA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807239|sp|C0RI03|RNC_BRUMB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|17983275|gb|AAL52468.1| ribonuclease iii [Brucella melitensis bv. 1 str. 16M] gi|23347459|gb|AAN29590.1| ribonuclease III [Brucella suis 1330] gi|62195753|gb|AAX74053.1| ribonuclease III [Brucella abortus bv. 1 str. 9-941] gi|82615650|emb|CAJ10637.1| Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain [Brucella melitensis biovar Abortus 2308] gi|161335442|gb|ABX61747.1| ribonuclease III [Brucella canis ATCC 23365] gi|163673656|gb|ABY37767.1| ribonuclease III [Brucella suis ATCC 23445] gi|189019447|gb|ACD72169.1| Ribonuclease III family [Brucella abortus S19] gi|225640547|gb|ACO00461.1| ribonuclease III [Brucella melitensis ATCC 23457] gi|255999259|gb|ACU47658.1| ribonuclease III [Brucella microti CCM 4915] gi|260872980|gb|EEX80049.1| ribonuclease III [Brucella abortus bv. 9 str. C68] gi|260920447|gb|EEX87100.1| ribonuclease III [Brucella ceti B1/94] gi|261300760|gb|EEY04257.1| ribonuclease III [Brucella neotomae 5K33] gi|262552295|gb|EEZ08285.1| ribonuclease III [Brucella ceti M490/95/1] gi|262765722|gb|EEZ11511.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether] gi|263001557|gb|EEZ14132.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1] gi|263094580|gb|EEZ18378.1| ribonuclease III family protein [Brucella melitensis bv. 2 str. 63/9] gi|264660557|gb|EEZ30818.1| ribonuclease III [Brucella pinnipedialis M292/94/1] Length = 245 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 119/220 (54%), Positives = 156/220 (70%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+R G+ F N LE+ALTHSS+ + +YERLEFLGDR+LGL ++ +LF F A Sbjct: 20 SILEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEA 79 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELSVR N+LV+AETC+ +A E+ LA I SD++ + +++ADVVE+LIA + Sbjct: 80 SEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATI 139 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG+E A +F+ +YWK+R+L++G RRDAKTELQEWAH + V P Y + RSGPDHD Sbjct: 140 YLDGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHD 199 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 P F V V + G AP +G SKR AEQ AA +L REG+W Sbjct: 200 PLFLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 239 >gi|149374709|ref|ZP_01892483.1| ribonuclease III [Marinobacter algicola DG893] gi|149361412|gb|EDM49862.1| ribonuclease III [Marinobacter algicola DG893] Length = 229 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 117/231 (50%), Gaps = 7/231 (3%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 MS+ L++RIGY F L ALTH S + ++ ERLEFLGD I+ ++I+ L Sbjct: 1 MSSQPDLEQLQRRIGYQFKTPERLLLALTHRSFGN---QNNERLEFLGDSIVNMVIAEYL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + HF+ A+EG+LS +V T +++ RE +L ++R+ S K SI AD V Sbjct: 58 YLHFEKAREGQLSRLRARMVKGVTLAEIGREFELGKYLRLGSGEMKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ES+I A+YLD V ++++ R L ++D KT LQE+ ++ P Y V Sbjct: 118 ESIIGAIYLDSDFHTCREQVLRWFEVRLQKLDLQDTQKDPKTRLQEYLQSRQFPLPRYDV 177 Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGIWT 227 G H F V + L G S+R AEQ AA LK+ G+ Sbjct: 178 ISVDGEAHAQTFHVSCALPSLDRKTTGTGNSRRIAEQQAARNALKQLGVEN 228 >gi|55821300|ref|YP_139742.1| ribonuclease III [Streptococcus thermophilus LMG 18311] gi|55823213|ref|YP_141654.1| ribonuclease III [Streptococcus thermophilus CNRZ1066] gi|81559233|sp|Q5LZ68|RNC_STRT1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|81560422|sp|Q5M3S3|RNC_STRT2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|55737285|gb|AAV60927.1| ribonuclease III [Streptococcus thermophilus LMG 18311] gi|55739198|gb|AAV62839.1| ribonuclease III [Streptococcus thermophilus CNRZ1066] Length = 237 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 116/230 (50%), Gaps = 8/230 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ L LE+ G F+ + LLE A TH+S ++ ++ ERLEFLGD L L+IS Sbjct: 9 MNQLE-QKLEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVIS 67 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+N + + EGE+S +++V E+ + + +IR+ K +I Sbjct: 68 VYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILG 127 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + ALYLD G+ F+++ + ++ G F R D KT LQE V Sbjct: 128 DLWEAFLGALYLDQGLPAVEKFLNQVMIPQ-VEKGNFDRVIDYKTALQERLQVNGKVDIT 186 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 Y V SGP H FT+ V + G + G+ SK+ AEQ AA L++ G Sbjct: 187 YTVIDESGPAHAKEFTMQVAVDGKELSTGLGKSKKLAEQAAAKSALEQLG 236 >gi|91794117|ref|YP_563768.1| ribonuclease III [Shewanella denitrificans OS217] gi|123165871|sp|Q12KI1|RNC_SHEDO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|91716119|gb|ABE56045.1| RNAse III [Shewanella denitrificans OS217] Length = 226 Score = 268 bits (686), Expect = 5e-70, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 125/225 (55%), Gaps = 7/225 (3%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M ++ + L + +GY F N+ LL +ALTH S ++ + ERLEFLGD IL ++IS L Sbjct: 1 MEPVKNLARLSRTLGYEFTNQELLVQALTHRSAANKH---NERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV ET + +A+E L ++ + K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVKGETLTLIAKEFKLGDYLFLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD ++ T + ++K R +K G ++D KT LQE+ P+Y+V Sbjct: 118 EAIIGAVYLDANMQACETLLLSWYKVRLDEIKPGINQKDPKTILQEYLQGYKKPLPDYQV 177 Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 G HD FTV I L G+ S+R AEQ+AAA++L+ Sbjct: 178 VQVDGEAHDQTFTVECRIQDLDEVVTGVGSSRRKAEQLAAAQILE 222 >gi|114564093|ref|YP_751607.1| ribonuclease III [Shewanella frigidimarina NCIMB 400] gi|122299035|sp|Q07YZ6|RNC_SHEFN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|114335386|gb|ABI72768.1| RNAse III [Shewanella frigidimarina NCIMB 400] gi|211926923|dbj|BAG82671.1| ribonuclease III [Shewanella sp. SIB1] Length = 226 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 7/225 (3%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M ++ L + +GY F N LL +ALTH S ++ + ERLEFLGD IL + IS L Sbjct: 1 MEPIKNLPRLCRTLGYEFNNIELLIQALTHRSAANKH---NERLEFLGDSILSIAISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV +T + +A+E L ++ + K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVKGDTLTIIAKEFKLGDYLYLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD IEV + ++++R +K G ++D KT LQE+ P+Y+V Sbjct: 118 EAIIGAVYLDADIEVCRKLLLSWYQERLAEIKPGINQKDPKTILQEYLQGFKKPLPDYQV 177 Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 G HD FTV +IS L G+ S+R AEQ+AAA+VL+ Sbjct: 178 VAVEGEAHDQTFTVECKISELDKVVTGVASSRRKAEQLAAAQVLE 222 >gi|307244287|ref|ZP_07526402.1| ribonuclease III [Peptostreptococcus stomatis DSM 17678] gi|306492437|gb|EFM64475.1| ribonuclease III [Peptostreptococcus stomatis DSM 17678] Length = 235 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 120/225 (53%), Gaps = 5/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFN 61 E++IGY F N++ ++ ALTHSS ++ ++E ERLEFLGD +LGL++S LF Sbjct: 10 ESIRAFEEKIGYEFKNKTYIQTALTHSSFANEHKEFNYNERLEFLGDSVLGLVVSDYLFR 69 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG+L+ ++V E+ S VAR+++L + + + S SI AD E+ Sbjct: 70 ARNDLPEGKLTRLRANVVCEESLSAVARKINLGDHLFLGKGEKTSGGSDRDSILADATEA 129 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +IAA+YLDGG + A F+ + K G RD KT LQE G YK+ Sbjct: 130 VIAAIYLDGGFDQAKDFILSNLRDTIAKNIDGNIFRDYKTILQEIIQGNNGK-ISYKLVG 188 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGPDH+ F + V+ G +K+ AE+ AA + L + G Sbjct: 189 ESGPDHNKEFEMQVKCGQDTIGIGKGKNKKEAEKEAARDALVKMG 233 >gi|88858204|ref|ZP_01132846.1| RNase III, dsRNA [Pseudoalteromonas tunicata D2] gi|88819821|gb|EAR29634.1| RNase III, dsRNA [Pseudoalteromonas tunicata D2] Length = 225 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + L +IGY F N +LLE+A+TH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNK-NVTDLYTKIGYTFNNVALLEQAMTHRS---HKGQHNERLEFLGDSILSFVIANELY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F ++EG+LS ++LV +T ++ E +L ++R+ K S AD VE Sbjct: 57 KRFPKSREGDLSRMRSTLVRGQTLAEFGLEFNLGDYLRLGPGELKSGGYRRESTLADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++LD GI+ + ++K R + G ++D KT LQE+ A+ P Y V Sbjct: 117 AIIGAVFLDSGIDTCSNLILSWYKFRLDEISPGLNQKDPKTLLQEYLQARKLPLPNYTVI 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 G H+ FTV + G+ + S+R AEQ AA + LK Sbjct: 177 DTKGQAHNQSFTVECVVEGMNSIVSVGSSRRKAEQKAAEKALK 219 >gi|164688568|ref|ZP_02212596.1| hypothetical protein CLOBAR_02213 [Clostridium bartlettii DSM 16795] gi|164602981|gb|EDQ96446.1| hypothetical protein CLOBAR_02213 [Clostridium bartlettii DSM 16795] Length = 233 Score = 268 bits (685), Expect = 6e-70, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 4/225 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLF 60 + E++I Y F N+ + +ALTHSS S+ + ERLEFLGD +L ++IS LF Sbjct: 8 SSNIELFEQKINYEFKNKEYILEALTHSSYSNENKNYPFNERLEFLGDSVLSIVISDYLF 67 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EGEL+ ++V E+ S+V++ + L ++ + SI AD +E Sbjct: 68 KKETKLPEGELTKIRANIVCEESLSEVSKNIHLGKYMLLGKGEEATGGRERISILADALE 127 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLDGGI+ A F+ ++ S GK RD KT LQE + YK+ Sbjct: 128 AVIAAIYLDGGIKCAREFILTNMEKIINDSIKGKIFRDYKTCLQEVLQSNGENNIWYKLI 187 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH+ RF + V I+ G SK+ AEQVAA L ++ Sbjct: 188 EEKGPDHNKRFVMEVGINDTVLGVGEGKSKKDAEQVAAKCALDKK 232 >gi|320547232|ref|ZP_08041525.1| ribonuclease III [Streptococcus equinus ATCC 9812] gi|320448120|gb|EFW88870.1| ribonuclease III [Streptococcus equinus ATCC 9812] Length = 228 Score = 268 bits (685), Expect = 6e-70, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M AL + L++ G F + +LL+ A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MQALD-TKLQRDFGITFKDTTLLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+LS + +V E+ + +R FI++ + K +I Sbjct: 60 QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDDFIKLGNGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL +D G+E F+++ + K + +D KT LQE VT +Y Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERVKDYKTTLQELLQGHGDVTIDY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +V+ SGP H F V V ++ A +QG+ SK+ AEQ AA L Sbjct: 180 RVSNESGPAHAKVFEVTVYVNDEAKSQGIGKSKKLAEQDAAKNAL 224 >gi|117921465|ref|YP_870657.1| ribonuclease III [Shewanella sp. ANA-3] gi|189043353|sp|A0KZN2|RNC_SHESA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|117613797|gb|ABK49251.1| RNAse III [Shewanella sp. ANA-3] Length = 226 Score = 268 bits (685), Expect = 6e-70, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 7/225 (3%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M ++ L + +GY F N LL +ALTH S ++ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNLPRLCRTLGYEFKNIDLLTQALTHRSAANKH---NERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV +T + +A+ L ++ + K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVRGDTLTLIAKAFKLGDYLFLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD +EV + ++ +R ++ G ++DAKT LQE+ P+Y+V Sbjct: 118 EAIIGAIYLDSDLEVCRKLLLHWYAERLAEIQPGVNQKDAKTLLQEYLQGLKKPLPDYQV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 G HD FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 178 INIEGDAHDQTFTVECRIDDLSESVIGVASSRRKAEQIAAAQVLE 222 >gi|157150981|ref|YP_001450082.1| ribonuclease III [Streptococcus gordonii str. Challis substr. CH1] gi|189043362|sp|A8AWC2|RNC_STRGC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157075775|gb|ABV10458.1| Ribonuclease III (RNase III) [Streptococcus gordonii str. Challis substr. CH1] Length = 232 Score = 267 bits (684), Expect = 7e-70, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 117/230 (50%), Gaps = 8/230 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L + L R G F + SLLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MKKLE-NLLFDRFGLVFKDVSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+L+ +++V E+ + +R+ FI++ K +I Sbjct: 60 EYLFEKYPKRPEGDLTKLRSTIVREESLAGFSRDCQFDRFIKLGKGEEKSGGRERETILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+EV F+ + + +++G F + D KT+LQE + V Sbjct: 120 DLFEAFLGALLLDKGLEVVKNFIYQVMIPK-VEAGDFEQVTDYKTKLQELLQSNGDVEIL 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 Y+V SGP H F V V + G +G SK+ AEQ AA ++E Sbjct: 179 YQVVSESGPAHAKNFEVSVSVDGRLVGKGQGRSKKLAEQEAAKNAFEKEN 228 >gi|260437031|ref|ZP_05790847.1| ribonuclease III [Butyrivibrio crossotus DSM 2876] gi|292810340|gb|EFF69545.1| ribonuclease III [Butyrivibrio crossotus DSM 2876] Length = 227 Score = 267 bits (684), Expect = 8e-70, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 + EK+IGYA+ N LL+ ALTHSS + + + ERLEFLGD +L L +S L Sbjct: 1 MNIKEFEKKIGYAYNNVDLLKLALTHSSYGNEVYKDKLHNNERLEFLGDAVLELTVSDYL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 FN + EG LS + S+V T + ARE++L + + F SI +D + Sbjct: 61 FNEECNMPEGSLSRKRASIVCEPTLAMCAREINLPEVLFMGKGEELTGGRFRDSIVSDAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++I ++YLDGGIE A F++K+ +K + D+KT LQE A + PEY +T Sbjct: 121 EAVIGSIYLDGGIECAREFINKFILA-DIKDKQLFVDSKTILQERIQAGYKEGPEYIITG 179 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 SGPDH F V I G G +K+AAEQ AA + Sbjct: 180 ESGPDHCKVFEAEVRIEGRLIGSGKGRTKKAAEQQAAYNAI 220 >gi|237815116|ref|ZP_04594114.1| ribonuclease III [Brucella abortus str. 2308 A] gi|260545623|ref|ZP_05821364.1| ribonuclease III [Brucella abortus NCTC 8038] gi|260563710|ref|ZP_05834196.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M] gi|260566758|ref|ZP_05837228.1| ribonuclease III family protein [Brucella suis bv. 4 str. 40] gi|260754424|ref|ZP_05866772.1| ribonuclease III [Brucella abortus bv. 6 str. 870] gi|260757643|ref|ZP_05869991.1| ribonuclease III [Brucella abortus bv. 4 str. 292] gi|260761470|ref|ZP_05873813.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59] gi|261213670|ref|ZP_05927951.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya] gi|261218969|ref|ZP_05933250.1| ribonuclease III [Brucella ceti M13/05/1] gi|261315123|ref|ZP_05954320.1| ribonuclease III [Brucella pinnipedialis M163/99/10] gi|261317321|ref|ZP_05956518.1| ribonuclease III [Brucella pinnipedialis B2/94] gi|261321532|ref|ZP_05960729.1| ribonuclease III [Brucella ceti M644/93/1] gi|261751989|ref|ZP_05995698.1| ribonuclease III [Brucella suis bv. 5 str. 513] gi|261754648|ref|ZP_05998357.1| ribonuclease III [Brucella suis bv. 3 str. 686] gi|261757876|ref|ZP_06001585.1| ribonuclease III family [Brucella sp. F5/99] gi|265983784|ref|ZP_06096519.1| ribonuclease III [Brucella sp. 83/13] gi|294852025|ref|ZP_06792698.1| ribonuclease III [Brucella sp. NVSL 07-0026] gi|297248033|ref|ZP_06931751.1| ribonuclease III [Brucella abortus bv. 5 str. B3196] gi|237789953|gb|EEP64163.1| ribonuclease III [Brucella abortus str. 2308 A] gi|260097030|gb|EEW80905.1| ribonuclease III [Brucella abortus NCTC 8038] gi|260153726|gb|EEW88818.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M] gi|260156276|gb|EEW91356.1| ribonuclease III family protein [Brucella suis bv. 4 str. 40] gi|260667961|gb|EEX54901.1| ribonuclease III [Brucella abortus bv. 4 str. 292] gi|260671902|gb|EEX58723.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59] gi|260674532|gb|EEX61353.1| ribonuclease III [Brucella abortus bv. 6 str. 870] gi|260915277|gb|EEX82138.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya] gi|260924058|gb|EEX90626.1| ribonuclease III [Brucella ceti M13/05/1] gi|261294222|gb|EEX97718.1| ribonuclease III [Brucella ceti M644/93/1] gi|261296544|gb|EEY00041.1| ribonuclease III [Brucella pinnipedialis B2/94] gi|261304149|gb|EEY07646.1| ribonuclease III [Brucella pinnipedialis M163/99/10] gi|261737860|gb|EEY25856.1| ribonuclease III family [Brucella sp. F5/99] gi|261741742|gb|EEY29668.1| ribonuclease III [Brucella suis bv. 5 str. 513] gi|261744401|gb|EEY32327.1| ribonuclease III [Brucella suis bv. 3 str. 686] gi|264662376|gb|EEZ32637.1| ribonuclease III [Brucella sp. 83/13] gi|294820614|gb|EFG37613.1| ribonuclease III [Brucella sp. NVSL 07-0026] gi|297175202|gb|EFH34549.1| ribonuclease III [Brucella abortus bv. 5 str. B3196] gi|326408683|gb|ADZ65748.1| Ribonuclease III family [Brucella melitensis M28] gi|326538408|gb|ADZ86623.1| ribonuclease III [Brucella melitensis M5-90] Length = 234 Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats. Identities = 119/220 (54%), Positives = 156/220 (70%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+R G+ F N LE+ALTHSS+ + +YERLEFLGDR+LGL ++ +LF F A Sbjct: 9 SILEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEA 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELSVR N+LV+AETC+ +A E+ LA I SD++ + +++ADVVE+LIA + Sbjct: 69 SEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATI 128 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG+E A +F+ +YWK+R+L++G RRDAKTELQEWAH + V P Y + RSGPDHD Sbjct: 129 YLDGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHD 188 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 P F V V + G AP +G SKR AEQ AA +L REG+W Sbjct: 189 PLFLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 228 >gi|289423974|ref|ZP_06425766.1| ribonuclease III [Peptostreptococcus anaerobius 653-L] gi|289155610|gb|EFD04283.1| ribonuclease III [Peptostreptococcus anaerobius 653-L] Length = 236 Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFN 61 + S+ EK+IGY F ++ ++ ALTHSS ++ ++E ERLEFLGD +LGL++S LF+ Sbjct: 10 EKISSFEKKIGYIFNDKENIQVALTHSSFANEHKEYKYNERLEFLGDSVLGLVVSDYLFS 69 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG+L+ ++V E+ S VAR+L+L ++ + + R+ S SI AD E+ Sbjct: 70 VRTDLPEGQLTKFRANVVCEESLSVVARKLNLGEYLLLGNGERQSGGSDRDSILADATEA 129 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +IAA+Y+DGG + A F+ + K+ G RD KT LQE +K G Y++ Sbjct: 130 VIAAIYIDGGFDKAKEFIMYNLRDVIAKTIDGNIFRDYKTILQEVIQSKNG-RISYRLVQ 188 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDHD F + V G+ +K+ AE+ AA L+ G Sbjct: 189 EKGPDHDKVFEMEVRSGNKVLGFGVGKNKKDAEKEAAKNALENMG 233 >gi|24372926|ref|NP_716968.1| ribonuclease III [Shewanella oneidensis MR-1] gi|81462673|sp|Q8EH81|RNC_SHEON RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|24347062|gb|AAN54413.1|AE015579_2 ribonuclease III [Shewanella oneidensis MR-1] Length = 226 Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 7/225 (3%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M ++ L + +GY F N LL +ALTH S ++ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNLPRLCRTLGYEFKNLDLLTQALTHRSAANKH---NERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV +T + +A+ L ++ + K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVRGDTLTLIAQAFKLGDYLFLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD +EV + ++ +R ++ G ++DAKT LQE+ P+Y+V Sbjct: 118 EAIIGAIYLDSDLEVCRQLLLNWYAERLAEIQPGINQKDAKTLLQEYLQGLKKPLPDYQV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 G HD FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 178 INIEGDAHDQTFTVECRIDDLSQSVIGVASSRRKAEQIAAAQVLE 222 >gi|16803845|ref|NP_465330.1| ribonuclease III [Listeria monocytogenes EGD-e] gi|224501394|ref|ZP_03669701.1| ribonuclease III [Listeria monocytogenes FSL R2-561] gi|22654060|sp|Q8Y691|RNC_LISMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|16411259|emb|CAC99883.1| rncS [Listeria monocytogenes EGD-e] Length = 229 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F N LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179 S I ALYLD GI+ TF+++ + + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILG 182 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP H+ F V ++G +G +K+ AEQ AA + + Sbjct: 183 ETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINKL 226 >gi|113971183|ref|YP_734976.1| ribonuclease III [Shewanella sp. MR-4] gi|122943634|sp|Q0HG98|RNC_SHESM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|113885867|gb|ABI39919.1| RNAse III [Shewanella sp. MR-4] Length = 226 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 7/225 (3%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M ++ L + +GY F N LL +ALTH S ++ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNLPRLCRTLGYEFKNIELLTQALTHRSAANKH---NERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV +T + +A+ L ++ + K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVRGDTLTLIAKAFKLGDYLFLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD +EV + ++ +R ++ G ++DAKT LQE+ P+Y+V Sbjct: 118 EAIIGAIYLDSDLEVCRKLLLHWYAERLAEIQPGVNQKDAKTLLQEYLQGLKKPLPDYQV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 G HD FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 178 INIEGDAHDQTFTVECRIDDLSESVIGVASSRRKAEQIAAAQVLE 222 >gi|313623280|gb|EFR93523.1| ribonuclease III [Listeria innocua FSL J1-023] Length = 229 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F N LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179 S I ALYLD GI+ TF+++ + + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILG 182 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP H+ F V ++G +G +K+ AEQ AA + + Sbjct: 183 ETGPAHNKSFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226 >gi|311693675|gb|ADP96548.1| ribonuclease 3 [marine bacterium HP15] Length = 229 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 7/231 (3%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 MS+ L++RIGY F + L ALTH S + ++ ERLEFLGD I+ ++I+ L Sbjct: 1 MSSQPDLDQLQRRIGYQFKSPERLLLALTHRSYGN---QNNERLEFLGDSIVNMVIAEYL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F HF+ A+EG+LS +V T +++ RE L +++R+ S K SI AD V Sbjct: 58 FLHFEKAREGQLSRLRARMVKGVTLAEIGREFQLGTYLRLGSGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ES+I A+YLD V ++++ R L ++D KT LQE+ ++ P Y V Sbjct: 118 ESIIGAIYLDSDFHTCREQVLRWFEHRLEKLDLQDTQKDPKTRLQEYLQSRQFPLPRYDV 177 Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGIWT 227 G H+ F V + L G S+R AEQ AA LK G+ Sbjct: 178 ISVDGEAHNQTFHVSCALPSLDRKTTGTGSSRRVAEQQAARNALKELGVEN 228 >gi|251772101|gb|EES52671.1| Ribonuclease III [Leptospirillum ferrodiazotrophum] Length = 254 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 7/225 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLL 59 LE+R+GY F++ LE+A H S ++ ++ ERLEFLGD +LGL+++ L Sbjct: 10 NLPVLEERLGYRFSSLERLEEATIHKSFTNETKKGGVRRDNERLEFLGDTVLGLVVAEYL 69 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EG LS +VS + +Q+AR + L ++ + SI +D + Sbjct: 70 MRLWPDSPEGVLSKLKGRIVSEPSLAQIARNIGLGRYLLIGRGEEMTQGREKNSILSDAL 129 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++IAA+Y DGG++ A F+ + +++ ++ G+ D KT+LQE+ + P+Y + Sbjct: 130 EAVIAAIYQDGGLDAARQFILREFRELFESVSRGESVADYKTQLQEYCQRELETLPQYVI 189 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 T +SGPDH F V V I +G SK+ AEQ AA L+R Sbjct: 190 TGQSGPDHQKVFEVAVRIRDKNWGEGQGHSKKEAEQKAAKSALER 234 >gi|89094542|ref|ZP_01167480.1| ribonuclease III [Oceanospirillum sp. MED92] gi|89081141|gb|EAR60375.1| ribonuclease III [Oceanospirillum sp. MED92] Length = 226 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 88/218 (40%), Positives = 126/218 (57%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + L +RIG+ F++ SL E ALTH S +++ ERLEFLGD IL +I+ L+ F Sbjct: 5 VNELARRIGHDFSDLSLFELALTHRSCG---KKNNERLEFLGDSILNFVIADDLYARFPK 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 AKEGELS +V T S+VAREL L ++R+ S K SI AD VE++I A Sbjct: 62 AKEGELSRLRARMVKGVTLSEVARELGLGDYLRLGSGELKSGGFRRDSILADAVEAIIGA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD ++ A ++ K+++QR L + +D+KT LQE+ ++ PEY++T G Sbjct: 122 IYLDSDMDTARAYILKWFEQRLSTLDLNESLKDSKTRLQEFLQSRRLALPEYELTNVEGE 181 Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220 H F + +SGL PA+G S+R AEQ AA L Sbjct: 182 AHAQTFYIDCRVSGLNNPAKGTGSSRRQAEQEAAKNAL 219 >gi|303242104|ref|ZP_07328595.1| ribonuclease III [Acetivibrio cellulolyticus CD2] gi|302590398|gb|EFL60155.1| ribonuclease III [Acetivibrio cellulolyticus CD2] Length = 235 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 112/224 (50%), Gaps = 6/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 + EK I Y F ++ L ALTHSS ++ Y+ S ERLEFLGD +L ++IS ++ Sbjct: 10 NIESFEKIIKYEFKDKDNLVLALTHSSYANEYKSEKLISNERLEFLGDSVLSVVISENIY 69 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ EGE++ ++V + A L + ++ + TSI +D +E Sbjct: 70 KNYSHLSEGEMTKFRANVVCEASLENCANNLSIGQYLLLGKGEEITGGRTRTSILSDAME 129 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLDGG+E A +FV ++ S G+ D KT+LQE Y++ Sbjct: 130 ALIGAIYLDGGLESAKSFVLSQMEKFIDDSIKGEIFMDYKTQLQEIIQKNNDQKVTYEII 189 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F V++ G +K+ AEQ+AA LK+ Sbjct: 190 DEKGPDHSKIFVSQVKLDDKVIGVGEGRTKKEAEQMAAKTSLKK 233 >gi|229541120|ref|ZP_04430180.1| ribonuclease III [Bacillus coagulans 36D1] gi|229325540|gb|EEN91215.1| ribonuclease III [Bacillus coagulans 36D1] Length = 246 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 109/224 (48%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 ++ L++++G F + +LL++A THSS + + E ERLEFLGD +L L +S LF Sbjct: 15 KFGKLQEQLGIHFQDVNLLKQAFTHSSYVNEHPEKRRHDNERLEFLGDAVLELTVSHYLF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N F S EGE++ S+V + A EL +I + ++ ADV E Sbjct: 75 NRFPSMNEGEMTKLRASVVCEPSLVIFANELHFGEYILLGKGEEMTGGRTRPALLADVFE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G++ + ++K + + D K++LQE+ + EY + Sbjct: 135 AFIGALYLDKGLKAVVSLLEKVVFPKIDEGLFSSTADYKSKLQEYVQKRTSGVLEYTILD 194 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP HD F V ++ A G SK+ AEQ AA L Sbjct: 195 ERGPAHDKEFVSSVSLNNKALGTGKGRSKKEAEQQAAQTALSNL 238 >gi|116873240|ref|YP_850021.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466444|sp|A0AJR0|RNC_LISW6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116742118|emb|CAK21242.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334] Length = 229 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 7/225 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFQDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + +IR+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAIHFSKYIRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 S I ALYLD GI+ TF+++ + + +G++ + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPK-IDAGEYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP H+ F V ++G +G +K+ AEQ AA + + Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226 >gi|319789592|ref|YP_004151225.1| ribonuclease III [Thermovibrio ammonificans HB-1] gi|317114094|gb|ADU96584.1| ribonuclease III [Thermovibrio ammonificans HB-1] Length = 236 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 126/228 (55%), Gaps = 10/228 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNH 62 + LE+ +GY+F ++ LL++AL H S + E+YE LEFLGD ++GL++S L Sbjct: 6 KLVALERLLGYSFKDKELLKRALIHRSFAFEKDTGENYEVLEFLGDAVIGLIVSEELIKR 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EGELS LVS + S++AR ++L F+ + ++ SI DV ES+ Sbjct: 66 FPEKSEGELSQIRAFLVSEPSLSKLARTINLGQFLYLGKGEKRTGGREKDSILCDVFESV 125 Query: 123 IAALYLDGGIEVAG-----TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ALYLD G E A F+ K W L++ +D K+ LQE ++ V P+Y+V Sbjct: 126 FGALYLDAGFEKAKEIFKNKFLKKLW--EILENAVTYKDFKSYLQEITQREYKVLPKYRV 183 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GP+HD FTV +++ + G SK+AAEQ AA E+LK G+ Sbjct: 184 VKAEGPEHDKTFTVECQVNDIT-TYGKGKSKKAAEQDAAREMLKALGV 230 >gi|222085390|ref|YP_002543920.1| ribonuclease III [Agrobacterium radiobacter K84] gi|254807233|sp|B9JC73|RNC_AGRRK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|221722838|gb|ACM25994.1| ribonuclease III [Agrobacterium radiobacter K84] Length = 239 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 137/219 (62%), Positives = 166/219 (75%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 TLE IG+AF + L+ ALTH+S +YERLEFLGDR+LGL I+ LLF F +A Sbjct: 14 TLEAAIGHAFVEKERLDWALTHASARTHKAGNYERLEFLGDRVLGLCIAELLFRTFGTAT 73 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EGELSVR N LVSAETC+ VA E+ L FIR +D++K M +++ADVVESLIAALY Sbjct: 74 EGELSVRLNQLVSAETCAAVADEMQLHLFIRTGADVKKLTGKRMLNVRADVVESLIAALY 133 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 LDGG+EVA F+ +YW+ RA++ RRDAKTELQEWAHAKFGVTP Y+V RSGPDHDP Sbjct: 134 LDGGLEVARKFILRYWEGRAVRPDGARRDAKTELQEWAHAKFGVTPVYRVDDRSGPDHDP 193 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 RFTV VE++G AP G++ SKRAAEQVAA +L+REGIW Sbjct: 194 RFTVTVEVAGAAPETGIERSKRAAEQVAATRILEREGIW 232 >gi|306833964|ref|ZP_07467088.1| ribonuclease III [Streptococcus bovis ATCC 700338] gi|304423965|gb|EFM27107.1| ribonuclease III [Streptococcus bovis ATCC 700338] Length = 228 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M AL + L++ G F +++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MQALD-TKLQQDFGIVFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+LS + +V E+ + +R FI++ + K +I Sbjct: 60 QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL +D G+E F+++ + K + +D KT LQE VT +Y Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERVKDYKTTLQELLQGHGDVTIDY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +V+ SGP H F V V ++ A +QG+ SK+ AEQ AA L Sbjct: 180 RVSNESGPAHAKVFEVTVYVNDKAKSQGIGKSKKLAEQDAAKNAL 224 >gi|300023749|ref|YP_003756360.1| ribonuclease III [Hyphomicrobium denitrificans ATCC 51888] gi|299525570|gb|ADJ24039.1| ribonuclease III [Hyphomicrobium denitrificans ATCC 51888] Length = 235 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 95/226 (42%), Positives = 135/226 (59%), Gaps = 2/226 (0%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58 + ++ LE ++G+ F + LLE+ALTH+S+ + ERLEF+GDR+LGL I+ + Sbjct: 2 LRPRKFKELETKLGHRFKDPGLLERALTHASVRGGKIARFDNERLEFIGDRVLGLAIAEI 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L + A EGEL+ R+N LV E C++VAR + L + + +S T+I AD Sbjct: 62 LNQQYPEASEGELARRYNRLVRGEACAKVARNIGLGAHLILSESEADSGGRDKTTILADA 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+L+ A+++D G E A V K W++++ + DAK+ LQEWA + P+Y V Sbjct: 122 AEALLGAVFIDVGFEKARAVVRKLWQEQSEPVPEVAVDAKSALQEWAQGQGLALPKYTVV 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 R GPDH PRFT V I+G APAQG SKR AEQ AA +L REG Sbjct: 182 SRKGPDHAPRFTAEVIIAGRAPAQGEGASKRIAEQAAATALLTREG 227 >gi|225025907|ref|ZP_03715099.1| hypothetical protein EUBHAL_00143 [Eubacterium hallii DSM 3353] gi|224956693|gb|EEG37902.1| hypothetical protein EUBHAL_00143 [Eubacterium hallii DSM 3353] Length = 232 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 124/227 (54%), Gaps = 8/227 (3%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTL 58 R+ LE++IGY F N+ L A+THSS ++ + + ERLEFLGD +L + IS Sbjct: 4 TERFKGLEEKIGYTFTNKRTLALAMTHSSYANEQRGRRKANNERLEFLGDAVLEVTISDY 63 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 +F + EG L+ +SLV T + AR+++L ++ +S SI +D Sbjct: 64 VFREYPGYNEGRLTKLRSSLVCEYTLAICARDVELGKYLLLSRGEDATGGRERDSILSDA 123 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+LI A+YLDGG++ A TF+ + + ++ DAKT LQE A EY +T Sbjct: 124 FEALIGAIYLDGGMDRARTFIHTHLLK-DVEDKSLFYDAKTILQEMVQAGPDPRLEYVLT 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKR 222 +GPDH+ FTV +I G A G +K+ AEQ+AA + +LK+ Sbjct: 183 REAGPDHNKEFTVEAKIGGKTYAIGKGKTKKGAEQIAAYQTILLLKK 229 >gi|224500035|ref|ZP_03668384.1| ribonuclease III [Listeria monocytogenes Finland 1988] gi|254831594|ref|ZP_05236249.1| ribonuclease III [Listeria monocytogenes 10403S] gi|284802251|ref|YP_003414116.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578] gi|284995393|ref|YP_003417161.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923] gi|284057813|gb|ADB68754.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578] gi|284060860|gb|ADB71799.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923] Length = 229 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F N LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179 S I ALYLD GI+ TF+++ + + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILG 182 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP H+ F V ++G +G +K+ AEQ AA + + Sbjct: 183 ETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226 >gi|47097388|ref|ZP_00234939.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854] gi|217964043|ref|YP_002349721.1| ribonuclease III [Listeria monocytogenes HCC23] gi|254829200|ref|ZP_05233887.1| ribonuclease III [Listeria monocytogenes FSL N3-165] gi|254899498|ref|ZP_05259422.1| ribonuclease III [Listeria monocytogenes J0161] gi|254912363|ref|ZP_05262375.1| ribonuclease III [Listeria monocytogenes J2818] gi|254936690|ref|ZP_05268387.1| ribonuclease III [Listeria monocytogenes F6900] gi|290893065|ref|ZP_06556054.1| ribonuclease III [Listeria monocytogenes FSL J2-071] gi|254807893|sp|B8DDU8|RNC_LISMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|47014236|gb|EAL05218.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854] gi|217333313|gb|ACK39107.1| ribonuclease III [Listeria monocytogenes HCC23] gi|258601611|gb|EEW14936.1| ribonuclease III [Listeria monocytogenes FSL N3-165] gi|258609286|gb|EEW21894.1| ribonuclease III [Listeria monocytogenes F6900] gi|290557425|gb|EFD90950.1| ribonuclease III [Listeria monocytogenes FSL J2-071] gi|293590344|gb|EFF98678.1| ribonuclease III [Listeria monocytogenes J2818] gi|307571387|emb|CAR84566.1| ribonuclease III [Listeria monocytogenes L99] gi|313608181|gb|EFR84216.1| ribonuclease III [Listeria monocytogenes FSL F2-208] Length = 229 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179 S I ALYLD GI+ TF+++ + + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILG 182 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP H+ F V ++G +G +K+ AEQ AA + + Sbjct: 183 ETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226 >gi|114048421|ref|YP_738971.1| ribonuclease III [Shewanella sp. MR-7] gi|122944480|sp|Q0HSJ1|RNC_SHESR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|113889863|gb|ABI43914.1| RNAse III [Shewanella sp. MR-7] Length = 226 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 7/225 (3%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M ++ L + +GY F N LL +ALTH S ++ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNLPRLCRTLGYEFKNLELLTQALTHRSAANKH---NERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV +T + +A+ L ++ + K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVRGDTLTLIAKAFKLGDYLFLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD +EV + ++ +R ++ G ++DAKT LQE+ P+Y+V Sbjct: 118 EAIIGAIYLDSDLEVCRKLLLHWYAERLAEIQPGVNQKDAKTLLQEYLQGLKKPLPDYQV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 G HD FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 178 INIEGDAHDQTFTVECRIDDLSESVIGVASSRRKAEQIAAAQVLE 222 >gi|254360744|ref|ZP_04976892.1| ribonuclease III [Mannheimia haemolytica PHL213] gi|153091314|gb|EDN73288.1| ribonuclease III [Mannheimia haemolytica PHL213] Length = 224 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 6/220 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY F N L +ALTH S + ++ ERLEFLGD IL I +L++ F Sbjct: 1 MQLERLQKKLGYQFHNLDYLIQALTHRSAA---TKNNERLEFLGDSILNFTIGKVLYDKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ DL ++++ K SI +D VE++I Sbjct: 58 PKANEGELSRMRATLVREQTLAIIARKFDLGDYLKLGPGELKSGGFRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD + A V+ ++ + + G ++D KT LQE+ + PEY V Sbjct: 118 AAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEFLQGRKLPLPEYDVLDIK 177 Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVL 220 G H+ F V ++ G+ S+R AEQ AA + L Sbjct: 178 GEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAAEKAL 217 >gi|187933552|ref|YP_001885438.1| ribonuclease III [Clostridium botulinum B str. Eklund 17B] gi|238691613|sp|B2TJ22|RNC_CLOBB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|187721705|gb|ACD22926.1| ribonuclease III [Clostridium botulinum B str. Eklund 17B] Length = 232 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 125/227 (55%), Gaps = 4/227 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTL 58 M+ +++ +E R+G F N SL++ ALTHSS + ++++ ERLEFLGD +L L I+ Sbjct: 1 MNRYKFNDIENRLGVYFNNPSLIKTALTHSSFGNQFKDAKYNERLEFLGDSVLQLCITEY 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LFN F EGEL+ + +V + ++A++L L +IR+S SIQAD Sbjct: 61 LFNKFKDKSEGELTKIRSLIVCENSLYEIAKKLSLGEYIRMSKGEELTGGRERMSIQADA 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYK 176 VE++IAA+YLD GI F+ ++++ K+ + D KT+LQE + +Y+ Sbjct: 121 VEAVIAAVYLDKGIGFVNDFILLHFEEMINKAINNEIVLDFKTKLQELLQKDGEILIQYE 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GP H +F V I+ G SK+ AEQ AA E LKR Sbjct: 181 LVKYEGPPHRRKFFTNVIINEKVMGIGEGYSKKEAEQNAAKEALKRL 227 >gi|239826585|ref|YP_002949209.1| ribonuclease III [Geobacillus sp. WCH70] gi|259491901|sp|C5D8T6|RNC_GEOSW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|239806878|gb|ACS23943.1| ribonuclease III [Geobacillus sp. WCH70] Length = 246 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L+K+IG F N LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 17 KFKELQKKIGIFFTNEKLLIQAFTHSSYVNEHRRRPHEDNERLEFLGDAVLELTVSQYLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EGEL+ ++V + + A L + + ++ ADV E Sbjct: 77 KKFPHMSEGELTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G++ F+ + + + D K++LQE EY + Sbjct: 137 AFIGALYLDQGMDAVMQFLGQTIFPKIDEGAFSHVMDFKSQLQELVQRDGIGVLEYSILE 196 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F V ++G G+ SK+ AEQ AA L++ Sbjct: 197 EKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAAQMALQKL 240 >gi|121602768|ref|YP_988789.1| ribonuclease III [Bartonella bacilliformis KC583] gi|189043293|sp|A1US36|RNC_BARBK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|120614945|gb|ABM45546.1| ribonuclease III [Bartonella bacilliformis KC583] Length = 235 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 112/226 (49%), Positives = 151/226 (66%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L+K G++F N LL+KALTHSS+ S Q +YERLEFLGDR+LGLL++ +L+ Sbjct: 1 MKHQTIDQLKKLTGHSFKNEDLLKKALTHSSVQRSEQGNYERLEFLGDRVLGLLVAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +ARE+ L + V +++ + ++ ADVVE Sbjct: 61 QFFPQASEGELSVRLNGLVNAQTCADIAREIGLPDMVHVGCEMKNLEGRRLANMHADVVE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG++ F+ +YW+ RA K RRDAKTELQEWAH + GV P+Y+V R Sbjct: 121 ALIAVIYLDGGLKSVRPFIQRYWQDRAKKIDASRRDAKTELQEWAHTQNGVQPQYRVIKR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 G DHDP F V V + G G SKR AE+ AA ++L+REG+W Sbjct: 181 CGLDHDPVFVVEVSVPGFVSEVGEGGSKRHAERAAAEKILRREGMW 226 >gi|115525028|ref|YP_781939.1| ribonuclease III [Rhodopseudomonas palustris BisA53] gi|115518975|gb|ABJ06959.1| RNAse III [Rhodopseudomonas palustris BisA53] Length = 268 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 101/217 (46%), Positives = 133/217 (61%), Gaps = 3/217 (1%) Query: 12 RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 RIG+ F + LL A TH S SHS +SY+R+EFLGD +LGL++S +L+ F A E Sbjct: 49 RIGHDFKDAGLLATAFTHVSALKSSHSRADSYQRMEFLGDHVLGLVVSDMLYRAFPKADE 108 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS R LV ETC+ VA L L I++ + S+ D+ E++I A+YL Sbjct: 109 GELSKRLADLVRKETCADVALALGLLDGIKLGTVGAGAGARLRKSVLGDICEAVIGAVYL 168 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG A FV+ W +R K + RD KT LQEWA K TP Y+ R+GPDHDP+ Sbjct: 169 DGGYPAAAKFVEANWTERMRKPTRSLRDPKTVLQEWAQGKGLPTPAYREVERTGPDHDPK 228 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 F V VE+ GL PA+G+ SKRAAE+ AA+ +L REG+ Sbjct: 229 FRVRVELPGLEPAEGIGGSKRAAEKEAASAMLAREGV 265 >gi|167771632|ref|ZP_02443685.1| hypothetical protein ANACOL_03004 [Anaerotruncus colihominis DSM 17241] gi|167666272|gb|EDS10402.1| hypothetical protein ANACOL_03004 [Anaerotruncus colihominis DSM 17241] Length = 232 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 114/222 (51%), Gaps = 5/222 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHF 63 S LE RIGY F N L+ ALTHSS ++ +++ ER EFLGD +L +++S LF+ + Sbjct: 11 SALEGRIGYTFQNGRYLDIALTHSSYANEVKKNISSNERQEFLGDAVLSIVVSDYLFHTY 70 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +LV ++ + ++ L L F+++ SI AD E+LI Sbjct: 71 -HLAEGDLTKLRAALVCEKSLWEFSQALGLGDFLKLGRGEEMMGGRTRPSILADAFEALI 129 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AA+YLDGGIE A FV Y D KT LQE Y + SG Sbjct: 130 AAIYLDGGIEPARRFVLGYIVDALENRDDLAFSDYKTMLQEIIQKNPEERLSYVLVNESG 189 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH+ +F V V ++ G SK++AEQ AA E LK G Sbjct: 190 PDHNKKFLVEVRLNSNVIGVGCGGSKKSAEQAAAREALKLMG 231 >gi|251791907|ref|YP_003006627.1| ribonuclease III [Aggregatibacter aphrophilus NJ8700] gi|247533294|gb|ACS96540.1| ribonuclease III [Aggregatibacter aphrophilus NJ8700] Length = 226 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 115/228 (50%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L+++I Y F + LL++ALTH S H + ERLEFLGD IL L I+ LF Sbjct: 1 MRTDNLDRLQRKIDYQFQDTGLLKQALTHRSAGHKH---NERLEFLGDAILNLTIAEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ L ++ + K SI AD VE Sbjct: 58 HQFPKCNEGELSRMRATLVREPTLAILARDFQLGDYLSLGQGELKSGGFRRESILADCVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD + A V ++++ + ++ G ++DAKT LQE+ P Y + Sbjct: 118 AIIGAISLDSNLTNATEIVTRWYQPLLKDIQPGDNQKDAKTRLQEYLQGNRLPVPTYNIV 177 Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ FTV I + G S+R AEQ AA ++L+ I Sbjct: 178 NIQGEAHNQLFTVECSIQNNDRTFIGKGSSRRKAEQAAAEQILQELKI 225 >gi|319939366|ref|ZP_08013726.1| ribonuclease 3 [Streptococcus anginosus 1_2_62CV] gi|319811352|gb|EFW07647.1| ribonuclease 3 [Streptococcus anginosus 1_2_62CV] Length = 232 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 112/224 (50%), Gaps = 7/224 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + L ++ G F + LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 5 HKVLSQQFGIVFQDEKLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLISEYLYK 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG+LS +++V E+ + +R+ FI++ K +I D+ E+ Sbjct: 65 KYPKKPEGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEA 124 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 + AL LD G+E F+ + + ++ G F + D KT+LQE V Y+V Sbjct: 125 FLGALLLDKGVEAVKNFLYQVMIPK-VEVGDFEQVVDYKTKLQELLQVNGDVEIVYQVIS 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V V + G QG SK+ AEQ AA ++E Sbjct: 184 ESGPAHAKEFAVAVSVDGRTVGQGQGRSKKLAEQEAAKNAFEKE 227 >gi|297530632|ref|YP_003671907.1| ribonuclease III [Geobacillus sp. C56-T3] gi|297253884|gb|ADI27330.1| ribonuclease III [Geobacillus sp. C56-T3] Length = 246 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 5/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L+K+IG F N LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 17 KFQELQKKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+L+ ++V + + A L + + ++ ADV E Sbjct: 77 QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G++ F++K + + D K++LQE T EY + Sbjct: 137 AFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILE 196 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H+ F V ++G G+ SK+ AEQ AA L+ Sbjct: 197 EKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALE 238 >gi|228992577|ref|ZP_04152504.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442] gi|228998625|ref|ZP_04158212.1| Ribonuclease 3 [Bacillus mycoides Rock3-17] gi|229006125|ref|ZP_04163813.1| Ribonuclease 3 [Bacillus mycoides Rock1-4] gi|228755201|gb|EEM04558.1| Ribonuclease 3 [Bacillus mycoides Rock1-4] gi|228761093|gb|EEM10052.1| Ribonuclease 3 [Bacillus mycoides Rock3-17] gi|228767211|gb|EEM15847.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442] Length = 245 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKMFQQKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL + + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAVVCEPSLVRFANELSFGNLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F V ++G+A G SK+ AEQ AA+E LK+ Sbjct: 199 KGPAHNREFVSRVTLNGVALGLGSGKSKKEAEQQAASEALKKL 241 >gi|291563451|emb|CBL42267.1| RNAse III [butyrate-producing bacterium SS3/4] Length = 226 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 74/218 (33%), Positives = 116/218 (53%), Gaps = 5/218 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 + L++ IGY F + LL ALTHSS ++ ERLEFLGD +L ++ S Sbjct: 2 KEKLEKLQEMIGYQFKDPGLLTHALTHSSYANEKHWDKTRCNERLEFLGDAVLEVISSDF 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF+ ++S EGE++ SLV T + A + L ++ + S+ +D Sbjct: 62 LFHTYESMPEGEMTKLRASLVCEPTLAYCADVIPLGDYLLLGKGEDLTGGRKRPSVVSDA 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +E++I A+YLDGG+ A F+ ++ ++ + D+KT LQE AK+ T Y++ Sbjct: 122 MEAVIGAIYLDGGLANAKEFIHRFIL-NDIEHKQLFYDSKTILQEMVQAKYKETLVYELL 180 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH+ F V V+I +G+ +K+AAEQVAA Sbjct: 181 KEEGPDHNKSFEVCVKIGDEEIGRGLGRTKKAAEQVAA 218 >gi|288905744|ref|YP_003430966.1| Ribonuclease III [Streptococcus gallolyticus UCN34] gi|306831841|ref|ZP_07464997.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978776|ref|YP_004288492.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732470|emb|CBI14042.1| Ribonuclease III [Streptococcus gallolyticus UCN34] gi|304426039|gb|EFM29155.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178704|emb|CBZ48748.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 228 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M AL + L++ G F +++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MQALD-TKLQRDFGIVFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+LS + +V E+ + +R FI++ + K +I Sbjct: 60 QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL +D G+E F+++ + K + +D KT LQE VT +Y Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERVKDYKTTLQELLQGHGDVTIDY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +V+ SGP H F V V ++ A +QG+ SK+ AEQ AA L Sbjct: 180 RVSNESGPAHAKVFEVTVYVNDEAKSQGIGRSKKLAEQDAAKNAL 224 >gi|147678073|ref|YP_001212288.1| ribonuclease III [Pelotomaculum thermopropionicum SI] gi|189043329|sp|A5D1H6|RNC_PELTS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|146274170|dbj|BAF59919.1| dsRNA-specific ribonuclease [Pelotomaculum thermopropionicum SI] Length = 241 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + + L+ R+G A+ + LL +ALTHSS ++ + E+ +RLEFLGD +L L +S L+ Sbjct: 7 KLTLLKNRLGIAWRDEGLLTRALTHSSFTYENRQNGLENNQRLEFLGDAVLELAVSDYLY 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+L+ S+V + ++VAREL+L + + + + SI AD E Sbjct: 67 RSKPEMDEGDLTKLRASVVCEPSLARVARELELGTCLYMGKGEERSGGRDRPSILADAFE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +L+ A+YLD G+E A KY + G+ RD KTELQE + G +Y + Sbjct: 127 ALLGAVYLDQGLEKAAGLAIKYLAPLIGDVLEGRLERDYKTELQELVQQRGGEQVQYVIL 186 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH FT V G+ QG SK+ AEQ AA + L + Sbjct: 187 KEEGPDHHKSFTAGVLYRGVLVGQGTGRSKKEAEQQAAKKALMK 230 >gi|169830829|ref|YP_001716811.1| ribonuclease III [Candidatus Desulforudis audaxviator MP104C] gi|169637673|gb|ACA59179.1| Ribonuclease III [Candidatus Desulforudis audaxviator MP104C] Length = 235 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 74/220 (33%), Positives = 113/220 (51%), Gaps = 4/220 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 + ++ IG + + LL +ALTHSS S+ + +RLEFLGD +L +++S L+ Sbjct: 6 NLAEFQEGIGLFWRDPDLLLEALTHSSFSYEHPGHRHNQRLEFLGDAVLEIVVSEHLYRR 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A EG+L+ ++V + VARE++L +++R+ S+ AD +E+L Sbjct: 66 LPDAPEGDLTKIRAAVVCEPALAHVAREMNLGTYLRMGRGEELSGGRERPSVLADALEAL 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + ALYLD G+EVA F + + A +GK D KT LQE + Y + Sbjct: 126 LGALYLDQGLEVARWFALQSLEPIISATLAGKGEADYKTRLQELLQKRSPEPLRYVIIKE 185 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDH+ FT V G +G +K+ AEQ AA E L Sbjct: 186 EGPDHNKLFTAGVVYRGKVLGRGTGRTKKEAEQHAAREAL 225 >gi|307252103|ref|ZP_07534002.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860403|gb|EFM92417.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 243 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 18 MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 75 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 135 AIIAAIYLDAGMDKAIAQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194 Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 240 >gi|170744647|ref|YP_001773302.1| ribonuclease III [Methylobacterium sp. 4-46] gi|168198921|gb|ACA20868.1| Ribonuclease III [Methylobacterium sp. 4-46] Length = 244 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 132/222 (59%), Gaps = 1/222 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S LE RIG+AF ++ LL +ALTH S + + +ESY+RLEFLGDR+LGL ++ L Sbjct: 15 DLSALEGRIGHAFDDKDLLARALTHVS-AGAGEESYQRLEFLGDRVLGLAVAEGLLRALP 73 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EG+LS R + LV E+C+ VA+ ++ +R+ + +I ADV E+++ Sbjct: 74 GADEGDLSRRLSGLVRRESCAAVAQAWEVGPHLRLGAGEVHGGGRRNPAILADVCEAILG 133 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A++LD G A +D+ + G RD K+ LQEWA TP Y V R+GPD Sbjct: 134 AIFLDAGYAAAKAVIDRAFAAAEEAEGPRGRDPKSALQEWAQGLGLPTPTYAVVERAGPD 193 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 H P F + ++G+AP+ G+ SKR AEQ AA +L+REG+W Sbjct: 194 HAPIFRIEARVAGVAPSLGVGGSKRLAEQEAARLLLRREGVW 235 >gi|315221419|ref|ZP_07863340.1| ribonuclease III [Streptococcus anginosus F0211] gi|315189538|gb|EFU23232.1| ribonuclease III [Streptococcus anginosus F0211] Length = 232 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 113/224 (50%), Gaps = 7/224 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + L ++ G F + LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 5 HKVLSQQFGIVFQDEKLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLISEYLYK 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG+LS +++V E+ + +R+ FI++ K +I D+ E+ Sbjct: 65 KYPKKPEGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEA 124 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 + AL LD G+E F+ + + ++ G F + D KT+LQE V Y+VT Sbjct: 125 FLGALLLDKGVEAVKNFLYQVMIPK-VEVGDFEQVIDYKTKLQELLQVNGDVEIVYQVTS 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V V + G QG SK+ AEQ AA ++E Sbjct: 184 ESGPAHAKEFAVAVSVDGRTVGQGQGRSKKLAEQEAAKNAFEKE 227 >gi|16800985|ref|NP_471253.1| ribonuclease III [Listeria innocua Clip11262] gi|22654065|sp|Q92AK3|RNC_LISIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|16414420|emb|CAC97149.1| rncS [Listeria innocua Clip11262] gi|313618316|gb|EFR90363.1| ribonuclease III [Listeria innocua FSL S4-378] Length = 229 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 112/224 (50%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F N LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179 S I ALYLD GI+ F+++ + + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIDKVVKFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILG 182 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP H+ F V ++G +G +K+ AEQ AA + + Sbjct: 183 ETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226 >gi|307247515|ref|ZP_07529560.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249746|ref|ZP_07531725.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307254355|ref|ZP_07536193.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258813|ref|ZP_07540545.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306856018|gb|EFM88176.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858254|gb|EFM90331.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306862654|gb|EFM94610.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867164|gb|EFM99020.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 243 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 18 MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 75 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 135 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194 Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 240 >gi|292490849|ref|YP_003526288.1| ribonuclease III [Nitrosococcus halophilus Nc4] gi|291579444|gb|ADE13901.1| ribonuclease III [Nitrosococcus halophilus Nc4] Length = 231 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 84/219 (38%), Positives = 120/219 (54%), Gaps = 6/219 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L ++GY F +LL A+TH S + +E+ ERLEFLGD IL LI+ L+ F Sbjct: 5 LRRLCGKLGYRFTEPALLRCAITHRSAA---KENNERLEFLGDSILNFLIAEFLYIRFPK 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EG+LS +LV ET +++AREL++ + + K TSI AD E++I A Sbjct: 62 AQEGKLSRLRATLVKGETLAELARELEIGDHLILGPGELKSGGYRRTSILADAFEAVIGA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGG+E V ++ R AL S +D KT LQE+ A+ P+Y+V+ G Sbjct: 122 VYLDGGLEACRKLVASLYEDRLEALTSEVLLKDPKTRLQEYLQARQLPLPDYRVSAVRGE 181 Query: 184 DHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 HD F V I+ P+ G S+R AEQ AA + L+ Sbjct: 182 AHDQVFQVECIINDTFPSVVGTGRSRRKAEQDAATQALE 220 >gi|138894713|ref|YP_001125166.1| ribonuclease III [Geobacillus thermodenitrificans NG80-2] gi|196247668|ref|ZP_03146370.1| Ribonuclease III [Geobacillus sp. G11MC16] gi|189043318|sp|A4IM67|RNC_GEOTN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|134266226|gb|ABO66421.1| Ribonuclease III [Geobacillus thermodenitrificans NG80-2] gi|196212452|gb|EDY07209.1| Ribonuclease III [Geobacillus sp. G11MC16] Length = 246 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 5/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L+K+IG F N LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 17 KFQELQKKIGITFQNEKLLIQAFTHSSYVNEHRRRFHEDNERLEFLGDAVLELTVSQYLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+L+ ++V + + A L + + ++ ADV E Sbjct: 77 QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G++V F+ + + + D K++LQE T EY + Sbjct: 137 AFIGALYLDQGMDVVLRFLGQTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILE 196 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H+ F V ++G G+ SK+ AEQ AA L+ Sbjct: 197 EKGPAHNKEFVARVALNGQELGVGVGRSKKEAEQHAAQMALE 238 >gi|307260992|ref|ZP_07542674.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869294|gb|EFN01089.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 243 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 18 MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 75 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 135 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194 Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 240 >gi|296133569|ref|YP_003640816.1| ribonuclease III [Thermincola sp. JR] gi|296032147|gb|ADG82915.1| ribonuclease III [Thermincola potens JR] Length = 245 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 110/225 (48%), Gaps = 7/225 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + L +G + + LL ALTHSS +H + E +RLEFLGD +L L+IS L+ Sbjct: 9 KIDELIGVMGIDWTSPELLVTALTHSSYAHENKREPIEHNQRLEFLGDAVLELVISEYLY 68 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F + EG L+ +V + + VAR ++L +I + + SI AD +E Sbjct: 69 DRFPTYPEGVLTKMRAGIVCESSLASVARAMNLGQYILMGKGEERSGGRNRPSILADAME 128 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ++ A+YLD G+E F+ + + + G D KTELQE K T Y + Sbjct: 129 AIFGAVYLDQGLETTKLFIINTLSEQISKVVAKGGQTGDYKTELQELVQQKADNTLTYAI 188 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH+ FT V G G +K+ AEQ AA + L++ Sbjct: 189 IGEEGPDHNKVFTAGVYCHGKIWGVGKGRTKKEAEQAAAHDALEK 233 >gi|46908036|ref|YP_014425.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365] gi|47093844|ref|ZP_00231588.1| ribonuclease III [Listeria monocytogenes str. 4b H7858] gi|226224408|ref|YP_002758515.1| ribonuclease III [Listeria monocytogenes Clip81459] gi|254826153|ref|ZP_05231154.1| ribonuclease III [Listeria monocytogenes FSL J1-194] gi|254852713|ref|ZP_05242061.1| ribonuclease III [Listeria monocytogenes FSL R2-503] gi|254933277|ref|ZP_05266636.1| ribonuclease III [Listeria monocytogenes HPB2262] gi|300763882|ref|ZP_07073879.1| ribonuclease III [Listeria monocytogenes FSL N1-017] gi|73917580|sp|Q71YL2|RNC_LISMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|259491903|sp|C1KWA4|RNC_LISMC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|46881306|gb|AAT04602.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365] gi|47017785|gb|EAL08574.1| ribonuclease III [Listeria monocytogenes str. 4b H7858] gi|225876870|emb|CAS05579.1| Putative ribonuclease III [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606034|gb|EEW18642.1| ribonuclease III [Listeria monocytogenes FSL R2-503] gi|293584837|gb|EFF96869.1| ribonuclease III [Listeria monocytogenes HPB2262] gi|293595393|gb|EFG03154.1| ribonuclease III [Listeria monocytogenes FSL J1-194] gi|300515618|gb|EFK42668.1| ribonuclease III [Listeria monocytogenes FSL N1-017] gi|328473534|gb|EGF44371.1| ribonuclease III [Listeria monocytogenes 220] gi|332312246|gb|EGJ25341.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A] Length = 229 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179 S I ALYLD GI+ TF+++ + + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILG 182 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP H+ F V ++G +G +K+ AEQ AA + + Sbjct: 183 ETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226 >gi|269123548|ref|YP_003306125.1| ribonuclease III [Streptobacillus moniliformis DSM 12112] gi|268314874|gb|ACZ01248.1| ribonuclease III [Streptobacillus moniliformis DSM 12112] Length = 233 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 6/230 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L +I Y F N+ LL +ALTHSS + + + ERLEFLGD ++ L+ + Sbjct: 1 MKKMDLEKLMSKINYTFKNKKLLLEALTHSSYVNEHNFPNIKDNERLEFLGDSVMDLITT 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ + + EGELS + ++S S ++R+L+L ++I +S+ S+ Sbjct: 61 EYIYKNNLKSNEGELSKIKSQIISETVFSTISRDLNLGNYIFLSNGENMSGGRERNSVLG 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174 DV E+++ A+YLD V K + + K D K+ LQE K+ VTP Sbjct: 121 DVFEAMVGAIYLDSDYATTRDVVLKLLESKINNLDKIEWVSDYKSALQEITQLKYKVTPI 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 Y V GPDHD F + V + +G+ SK+ AE++AA + +++ Sbjct: 181 YTVLSEIGPDHDKTFEIEVRVEERLYGKGVAKSKKMAEKIAAKQAIEKLN 230 >gi|261492470|ref|ZP_05989024.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496943|ref|ZP_05993311.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307467|gb|EEY08802.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311833|gb|EEY12982.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 224 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 75/220 (34%), Positives = 117/220 (53%), Gaps = 6/220 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY F N L +ALTH S + ++ ERLEFLGD IL I +L++ F Sbjct: 1 MQLERLQKKLGYQFHNLDYLIQALTHRSAA---TKNNERLEFLGDSILNFTIGKVLYDKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EGELS +LV +T + +AR+ DL ++++ K SI +D VE++I Sbjct: 58 PKSNEGELSRMRATLVREQTLAIIARKFDLGDYLKLGPGELKSGGFRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD + A V+ ++ + + G ++D KT LQE+ + PEY V Sbjct: 118 AAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEFLQGRKLPLPEYDVLDIK 177 Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVL 220 G H+ F V ++ G+ S+R AEQ AA + L Sbjct: 178 GEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAAEKAL 217 >gi|261419391|ref|YP_003253073.1| ribonuclease III [Geobacillus sp. Y412MC61] gi|319766206|ref|YP_004131707.1| ribonuclease III [Geobacillus sp. Y412MC52] gi|261375848|gb|ACX78591.1| ribonuclease III [Geobacillus sp. Y412MC61] gi|317111072|gb|ADU93564.1| ribonuclease III [Geobacillus sp. Y412MC52] Length = 246 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 5/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L+K+IG F N LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 17 KFQELQKKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+L+ ++V + + A L + + ++ ADV E Sbjct: 77 QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G++ F++K + + D K++LQE T EY + Sbjct: 137 AFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILE 196 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H+ F V ++G G+ SK+ AEQ AA L+ Sbjct: 197 EKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALE 238 >gi|307263177|ref|ZP_07544798.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306871539|gb|EFN03262.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 243 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 18 MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 75 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 135 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194 Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLVKL 240 >gi|299821773|ref|ZP_07053661.1| ribonuclease III [Listeria grayi DSM 20601] gi|299817438|gb|EFI84674.1| ribonuclease III [Listeria grayi DSM 20601] Length = 230 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F N LL++A THSS + +++ ERLEFLGD +L L +S LF Sbjct: 3 KWEELQESVGFTFENVGLLQEAFTHSSYVNEHRKEKLNDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+L+ ++V + + A + + +IR+ + K ++ ADV E Sbjct: 63 QKYPNLAEGQLTKMRAAIVCEPSLVEFAENIHFSKYIRLGNGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179 S I ALYLD G++ F+++ + D KT+LQE V +Y + Sbjct: 123 SFIGALYLDNGLKNVIRFLERVIFPKIDTGAFLETVDHKTQLQEIVQRDRDVLIQYDILE 182 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V ++G +G +K+ AEQ AA E + + Sbjct: 183 ESGPAHSKAFEAQVVVNGQMLGRGEGRTKKQAEQNAAKEAINKL 226 >gi|212639596|ref|YP_002316116.1| ribonuclease III [Anoxybacillus flavithermus WK1] gi|226735364|sp|B7GGE9|RNC_ANOFW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|212561076|gb|ACJ34131.1| DsRNA-specific ribonuclease [Anoxybacillus flavithermus WK1] Length = 238 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 104/225 (46%), Gaps = 5/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 +++ +++ G F N LL +A THSS + ++ E ERLEFLGD +L L +S L Sbjct: 8 VKFKQFQEQTGIFFRNEKLLIQAFTHSSYVNEHRKRLHEDNERLEFLGDAVLELTVSQYL 67 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F EGEL+ ++V + A L + + S+ ADV Sbjct: 68 FEQFPQMSEGELTKMRAAIVCEPSLVTFAHALSFGDLVLLGKGEELTGGRMRPSLLADVF 127 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+ I ALYLD GIE F+ K + + D K++LQE+ EYK+ Sbjct: 128 EAFIGALYLDQGIEAVVQFLGKTIFPKIREGAFSHVMDYKSQLQEFVQRDGSGVLEYKIL 187 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F V ++G G+ SK+ AEQ AA L + Sbjct: 188 QERGPAHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAAQMALAKL 232 >gi|161761284|ref|YP_032108.2| ribonuclease III [Bartonella quintana str. Toulouse] Length = 246 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 117/226 (51%), Positives = 153/226 (67%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ LE+ + F + L+KALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 12 MNCPIIDQLERLTEHHFKDEERLKKALTHSSVQDSEQGNYERLEFLGDRVLGLLIAEMLY 71 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +A E+ L I V ++R +T++ ADV+E Sbjct: 72 KLFPQASEGELSVRLNGLVNAQTCADIALEMGLPDMIHVGFEMRNLKGRRLTNMHADVIE 131 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG++ F+ +YW+ RA + RRDAKTELQEWAH + GV P Y+V R Sbjct: 132 ALIAVMYLDGGLKSVRPFIRRYWQSRAKQMDAGRRDAKTELQEWAHVQGGVQPHYRVVKR 191 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDP F V V I G AP G SKR AE++AA +VL+REGIW Sbjct: 192 SGPDHDPVFMVEVSILGFAPEIGQGNSKRCAERMAAEKVLRREGIW 237 >gi|302386299|ref|YP_003822121.1| ribonuclease III [Clostridium saccharolyticum WM1] gi|302196927|gb|ADL04498.1| ribonuclease III [Clostridium saccharolyticum WM1] Length = 233 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 74/216 (34%), Positives = 113/216 (52%), Gaps = 5/216 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 LE+RIGY F++R L+ +A+THSS ++ ++ E ERLEFLGD +L ++ S L+ Sbjct: 4 NLKELEERIGYRFSDRHLMTQAMTHSSYANEHRLNKLECNERLEFLGDSVLEVVSSDCLY 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+L+ S+V T + A + L ++ + SI +D +E Sbjct: 64 HKYPEKPEGDLTKIRASIVCEPTLAYCAESIRLGEYLLLGKGEEATGGRGRASIVSDAME 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI A+YLDGG A F+ ++ L+ + D+KT LQE K Y++ Sbjct: 124 ALIGAIYLDGGFANAKEFILRFI-MNDLEHKQLFYDSKTILQEIVQRKTDEPLSYELLRE 182 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH+ F V I QG +K+AAEQVAA Sbjct: 183 EGPDHNKVFEAQVLIGQEVIGQGTGRTKKAAEQVAA 218 >gi|152999778|ref|YP_001365459.1| ribonuclease III [Shewanella baltica OS185] gi|189043347|sp|A6WKQ7|RNC_SHEB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|151364396|gb|ABS07396.1| Ribonuclease III [Shewanella baltica OS185] Length = 226 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 126/225 (56%), Gaps = 7/225 (3%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M ++ L + +GY F N LL +ALTH S ++ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNLPRLCRTLGYEFKNIELLTQALTHRSAANKH---NERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV +T + +A+E L ++ + K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVRGDTLTIIAQEFKLGDYLYLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD +EV + K++ +R ++ G ++DAKT LQE P+Y+V Sbjct: 118 EAIIGAVYLDSDLEVCRALLLKWYAERLAEIQPGISQKDAKTLLQEHLQGFKKPLPDYQV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 G HD FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 178 INIEGDAHDQTFTVECRIEDLSQSVIGVASSRRKAEQIAAAQVLE 222 >gi|1389549|dbj|BAA10976.1| ORF3 [Bacillus subtilis] Length = 266 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 108/225 (48%), Gaps = 5/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS L Sbjct: 18 EQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F + + EG+L+ ++V + +A EL + + ++ ADV Sbjct: 78 FPKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVF 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+ I ALYLD G+E +F+ Y + D K++LQE+ + EYK++ Sbjct: 138 EAFIGALYLDQGLEPVESFLKVYVFPKINDGAFPHVMDFKSQLQEYVQRDGKGSLEYKIS 197 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F +V + G G SK+ AEQ AA E L + Sbjct: 198 NEKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAKL 242 >gi|332532635|ref|ZP_08408511.1| ribonuclease III [Pseudoalteromonas haloplanktis ANT/505] gi|332037851|gb|EGI74300.1| ribonuclease III [Pseudoalteromonas haloplanktis ANT/505] Length = 225 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 79/219 (36%), Positives = 118/219 (53%), Gaps = 5/219 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L K+IGY FA++ LLE+A+TH S + ERLEFLGD IL +I+ L+ F Sbjct: 4 NVTELYKKIGYEFADQGLLEQAMTHRS---HKGQHNERLEFLGDSILSFVIANALYAKFP 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A+EG+LS ++LV +T ++ E L ++R+ K S AD VE++I Sbjct: 61 KAREGDLSRMRSTLVRGQTLAEFGLEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +LD GI+ G + +++ R A+ G ++D KT LQE+ A+ P Y V G Sbjct: 121 AAFLDSGIDSCGDLILSWYESRLDAISPGLNQKDPKTLLQEYLQARKLSLPGYTVVDTKG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H+ FTV + G+ + S+R AEQ AA + LK Sbjct: 181 QAHNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALK 219 >gi|1228146|gb|AAA92440.1| RNase III [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 224 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 7/219 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALS 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S + LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 -RFPRVDEGDMSRMRDPLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ + P Y V Sbjct: 117 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAA 216 G HD FT+ ++SGL P G S+R AEQ AA Sbjct: 177 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAA 215 >gi|120599802|ref|YP_964376.1| ribonuclease III [Shewanella sp. W3-18-1] gi|146292262|ref|YP_001182686.1| ribonuclease III [Shewanella putrefaciens CN-32] gi|189043352|sp|A4Y4K4|RNC_SHEPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043355|sp|A1RMC7|RNC_SHESW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|120559895|gb|ABM25822.1| RNAse III [Shewanella sp. W3-18-1] gi|145563952|gb|ABP74887.1| RNAse III [Shewanella putrefaciens CN-32] gi|319425561|gb|ADV53635.1| ribonuclease III [Shewanella putrefaciens 200] Length = 226 Score = 265 bits (677), Expect = 5e-69, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 7/225 (3%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M ++ L + +GY F LL +ALTH S ++ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNLPRLCRTLGYEFTQIELLTQALTHRSAANKH---NERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV +T + +A+E L ++ + K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVRGDTLTIIAQEFKLGDYLYLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD +EV + ++ +R ++ G ++DAKT LQE+ P+Y+V Sbjct: 118 EAIIGAIYLDSDLEVCRKLLLTWYAERLAEIQPGVSQKDAKTLLQEYLQGLKKPLPDYQV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 G HD FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 178 INIEGDAHDQTFTVECRIEDLSQSVIGVASSRRKAEQIAAAQVLE 222 >gi|206603814|gb|EDZ40294.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG'] Length = 247 Score = 265 bits (677), Expect = 5e-69, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 119/231 (51%), Gaps = 8/231 (3%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLL 54 M R S LE +GY F LLE+A TH S + + + ERLEFLGD +LGL+ Sbjct: 1 MKPHRELSELEDLLGYRFRKIDLLEEATTHKSFMNEGRRLGVTRNNERLEFLGDTVLGLV 60 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 I+ L + EG LS +VS T + V+R L + F+ + +S+ Sbjct: 61 IAEYLMVTYPKYPEGVLSKFKGRIVSEPTLASVSRVLGIGGFLLIGKGEELTQGREKSSL 120 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVT 172 AD +E++IAA+YLD G++ A TF+ +++ ++ +D KT+LQE+ + Sbjct: 121 LADAMEAVIAAIYLDSGLDAARTFIIGHFRSVIEQTVQEDSIQDYKTDLQEYCQRELETL 180 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P Y+V + GPDH F V V I G +G SK+ AEQ AA + L R Sbjct: 181 PVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGRSKKEAEQKAAKDALSRL 231 >gi|315282805|ref|ZP_07871128.1| ribonuclease III [Listeria marthii FSL S4-120] gi|313613534|gb|EFR87355.1| ribonuclease III [Listeria marthii FSL S4-120] Length = 229 Score = 265 bits (677), Expect = 5e-69, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPEMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179 S I ALYLD GI+ TF+++ + + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILG 182 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP H+ F V ++G +G +K+ AEQ AA + + Sbjct: 183 ETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226 >gi|262282633|ref|ZP_06060401.1| ribonuclease III [Streptococcus sp. 2_1_36FAA] gi|262261924|gb|EEY80622.1| ribonuclease III [Streptococcus sp. 2_1_36FAA] Length = 232 Score = 265 bits (677), Expect = 5e-69, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 8/230 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L + L R G F + SLLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MKKLE-NLLFDRFGLVFKDVSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+L+ +++V E+ + +R+ FI++ K +I Sbjct: 60 EYLFEKYPKRPEGDLTKLRSTIVREESLAGFSRDCQFDLFIKLGKGEEKSGGRERETILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E+ F+ + + +++G F + D KT+LQE + V Sbjct: 120 DLFEAFLGALLLDKGLEIVKDFIYQVMIPK-VEAGDFEQVTDYKTKLQELLQSNGDVEIL 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 Y+V SGP H F V V + G +G SK+ AEQ AA ++E Sbjct: 179 YQVVSESGPAHAKNFEVSVSVDGRLVGKGQGRSKKLAEQEAAKNAFEKEN 228 >gi|326794405|ref|YP_004312225.1| ribonuclease 3 [Marinomonas mediterranea MMB-1] gi|326545169|gb|ADZ90389.1| Ribonuclease 3 [Marinomonas mediterranea MMB-1] Length = 227 Score = 264 bits (676), Expect = 6e-69, Method: Composition-based stats. Identities = 93/226 (41%), Positives = 126/226 (55%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS+L Y L +RIGY FA+ LLE ALTH S ++ ERLEFLGD IL +I+ LF Sbjct: 1 MSSL-YQKLCRRIGYFFADLGLLELALTHRSYG---GKNNERLEFLGDSILNYVIAEDLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F AKEGELS SLV +T +++ARE L F+++ + K SI AD VE Sbjct: 57 HRFPKAKEGELSRLRASLVKGDTLAELAREFQLGDFLKLGAGELKSGGFRRDSILADTVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +I A+YLD G++ + +++K R + +DAKT LQE+ A+ P+Y+V Sbjct: 117 GIIGAMYLDAGMDTCKNQILEWYKTRLDATSLNVVTKDAKTRLQEYLQARKHGLPQYEVV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223 G HD F V I A +G S+R AEQ AAAE L + Sbjct: 177 NIDGEPHDQTFFVHCHIEIFDQAVEGKGNSRRIAEQNAAAEALSQL 222 >gi|188589361|ref|YP_001920585.1| ribonuclease III [Clostridium botulinum E3 str. Alaska E43] gi|251778911|ref|ZP_04821831.1| ribonuclease III [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|238689672|sp|B2V4D6|RNC_CLOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|188499642|gb|ACD52778.1| ribonuclease III [Clostridium botulinum E3 str. Alaska E43] gi|243083226|gb|EES49116.1| ribonuclease III [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 232 Score = 264 bits (676), Expect = 6e-69, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 125/227 (55%), Gaps = 4/227 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTL 58 M+ +++ +E R+G F N SL++ ALTHSS + ++++ ERLEFLGD +L L I+ Sbjct: 1 MNRYKFNDIENRLGVYFNNPSLIKTALTHSSFGNQFKDAKYNERLEFLGDSVLQLCITEY 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LFN F EGEL+ + +V + ++A++L L +IR+S SIQAD Sbjct: 61 LFNKFKDKSEGELTKIRSLIVCENSLYEIAKKLSLGEYIRMSKGEELTGGRERMSIQADA 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYK 176 VE++IAA+YLD GI F+ ++++ K+ + D KT+LQE + +Y+ Sbjct: 121 VEAVIAAVYLDKGIGFVNDFILLHFEEMINKAINNEIVLDFKTKLQELLQKDGEILIQYE 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GP H +F V I+ G SK+ AEQ AA E LKR Sbjct: 181 LLKYEGPPHRRKFFTNVIINEKVMGIGEGYSKKEAEQNAAKEALKRL 227 >gi|222148081|ref|YP_002549038.1| ribonuclease III [Agrobacterium vitis S4] gi|259491897|sp|B9JUN7|RNC_AGRVS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|221735069|gb|ACM36032.1| ribonuclease III [Agrobacterium vitis S4] Length = 239 Score = 264 bits (676), Expect = 6e-69, Method: Composition-based stats. Identities = 131/227 (57%), Positives = 160/227 (70%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 ++A +E IGY F + L+KALTHSS + YERLEFLGDR+LGL ++ LF Sbjct: 7 LTAEEREKVEAVIGYHFIGKERLDKALTHSSARPAKGSDYERLEFLGDRVLGLCVAEHLF 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F +A EGELSVR N LVSAETC+ VA E+ L +IR +D++K M +++ADVVE Sbjct: 67 KVFRAATEGELSVRLNQLVSAETCAAVADEIQLHRYIRTGADVKKLTDKNMLNVRADVVE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAA+YLD G+E A FV K+W +RA + RRDAKTELQEWAHAKF VTP Y+V R Sbjct: 127 SLIAAIYLDAGLEAARAFVLKFWAERASRQDAGRRDAKTELQEWAHAKFAVTPVYRVADR 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 SGPDHDP FTV VEI L P G+D SKRAAEQ AA +L+REG+WT Sbjct: 187 SGPDHDPSFTVTVEIGKLEPETGIDRSKRAAEQAAATRLLEREGVWT 233 >gi|295399780|ref|ZP_06809761.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93] gi|312111708|ref|YP_003990024.1| ribonuclease III [Geobacillus sp. Y4.1MC1] gi|294978183|gb|EFG53780.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93] gi|311216809|gb|ADP75413.1| ribonuclease III [Geobacillus sp. Y4.1MC1] Length = 246 Score = 264 bits (676), Expect = 7e-69, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L+K+IG F N LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 17 KFKELQKKIGIFFTNEKLLIQAFTHSSYVNEHRKRPHEDNERLEFLGDAVLELTVSQYLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EGEL+ ++V + + A L + + ++ ADV E Sbjct: 77 KKFPHMSEGELTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G++ F+ + + + D K++LQE EY + Sbjct: 137 AFIGALYLDKGMDAVMQFLGQTIFPKIDEGAFSHVMDFKSQLQELVQRDGIGVLEYSILE 196 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F V ++G G+ SK+ AEQ AA L++ Sbjct: 197 EKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAAQMALQKL 240 >gi|324993856|gb|EGC25775.1| ribonuclease III [Streptococcus sanguinis SK405] gi|325690806|gb|EGD32807.1| ribonuclease III [Streptococcus sanguinis SK115] gi|332367146|gb|EGJ44882.1| ribonuclease III [Streptococcus sanguinis SK1059] Length = 232 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + LE+ F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENLKKALLEQ-FDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E +F+ + + +++G F R D KT+LQE V Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIT 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V +GP H F V V I+G QG SK+ AEQ AA ++E Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227 >gi|56419727|ref|YP_147045.1| ribonuclease III [Geobacillus kaustophilus HTA426] gi|81347639|sp|Q5L0Q3|RNC_GEOKA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56379569|dbj|BAD75477.1| dsRNA-specific ribonuclease [Geobacillus kaustophilus HTA426] Length = 246 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 105/222 (47%), Gaps = 5/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L+ +IG F N LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 17 KFQELQNKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+L+ ++V + + A L + + ++ ADV E Sbjct: 77 QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G++ F++K + + D K++LQE T EY + Sbjct: 137 AFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILE 196 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H+ F V ++G G+ SK+ AEQ AA L+ Sbjct: 197 EKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALE 238 >gi|15601926|ref|NP_244998.1| ribonuclease III [Pasteurella multocida subsp. multocida str. Pm70] gi|13431826|sp|P57805|RNC_PASMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|12720269|gb|AAK02145.1| Rnc [Pasteurella multocida subsp. multocida str. Pm70] Length = 225 Score = 264 bits (675), Expect = 8e-69, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 112/220 (50%), Gaps = 6/220 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L+++IGY F +LL++ALTH S + + ERLEFLGD IL +I+ L++ F Sbjct: 4 NLERLQRQIGYQFNQPALLKQALTHRSAA---VKHNERLEFLGDAILNFIIAEALYHQFP 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGELS +LV T + +AR+ +L ++ + K SI AD VE++I Sbjct: 61 KCNEGELSRMRATLVREPTLASLARQFELGDYLSLGPGELKSGGFRRESILADCVEAIIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+ LD + V +++ + ++ G ++D KT LQE+ K P Y V G Sbjct: 121 AISLDSDLATTTKIVQHWYQAQLKQIQPGDNQKDPKTRLQEYLQGKRLPLPTYNVVEIKG 180 Query: 183 PDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 H FTV + + G S+R AEQ AA ++L+ Sbjct: 181 EAHCQTFTVECYVKNIDRTFMGSGASRRKAEQAAAEKILQ 220 >gi|81647146|sp|Q6G082|RNC_BARQU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|49239570|emb|CAF25927.1| Ribonuclease III [Bartonella quintana str. Toulouse] Length = 235 Score = 264 bits (675), Expect = 8e-69, Method: Composition-based stats. Identities = 117/226 (51%), Positives = 153/226 (67%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ LE+ + F + L+KALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 1 MNCPIIDQLERLTEHHFKDEERLKKALTHSSVQDSEQGNYERLEFLGDRVLGLLIAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +A E+ L I V ++R +T++ ADV+E Sbjct: 61 KLFPQASEGELSVRLNGLVNAQTCADIALEMGLPDMIHVGFEMRNLKGRRLTNMHADVIE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG++ F+ +YW+ RA + RRDAKTELQEWAH + GV P Y+V R Sbjct: 121 ALIAVMYLDGGLKSVRPFIRRYWQSRAKQMDAGRRDAKTELQEWAHVQGGVQPHYRVVKR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDP F V V I G AP G SKR AE++AA +VL+REGIW Sbjct: 181 SGPDHDPVFMVEVSILGFAPEIGQGNSKRCAERMAAEKVLRREGIW 226 >gi|289435148|ref|YP_003465020.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171392|emb|CBH27936.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313632767|gb|EFR99733.1| ribonuclease III [Listeria seeligeri FSL N1-067] gi|313637349|gb|EFS02832.1| ribonuclease III [Listeria seeligeri FSL S4-171] Length = 230 Score = 264 bits (675), Expect = 8e-69, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 KWEELQESVGFDFQDIELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179 S I ALYLD G+E F+++ + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGLEKVVKFLERVIFPKIDAGAYLETVDYKTQLQEIVQRDRDVLIEYDILG 182 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP H+ F V ++G +G +K+ AEQ AA + + Sbjct: 183 ETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226 >gi|46143661|ref|ZP_00134800.2| COG0571: dsRNA-specific ribonuclease [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 226 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 1 MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 58 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 118 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 177 Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 178 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 223 >gi|126667175|ref|ZP_01738149.1| ribonuclease III [Marinobacter sp. ELB17] gi|126628331|gb|EAZ98954.1| ribonuclease III [Marinobacter sp. ELB17] Length = 229 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 115/226 (50%), Gaps = 6/226 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L++RIGY F ++ L ALTH S + ++ ERLEFLGD I+ ++I+ LF F Sbjct: 6 DLEPLQRRIGYQFKSQERLLLALTHRSFGN---QNNERLEFLGDSIVNMVIAEHLFRRFP 62 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A+EG+LS +V T +++ RE DL S++R+ S K SI AD VES+I Sbjct: 63 KAREGQLSRLRARMVKGVTLAEIGREFDLGSYLRLGSGELKSGGFRRESILADAVESVIG 122 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD + +++ R L ++D KT LQE+ ++ P Y V G Sbjct: 123 AIYLDSDFVTCQAQILRWFDLRLQNLDLQDTQKDPKTRLQEYLQSRQFPLPIYDVLSVDG 182 Query: 183 PDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGIWT 227 H+ F + +S L G S+R AEQ AA LK G+ Sbjct: 183 EAHNQTFHISCALSSLGRKTTGSGNSRRIAEQQAARNALKELGVEN 228 >gi|325677853|ref|ZP_08157495.1| ribonuclease III [Ruminococcus albus 8] gi|324110407|gb|EGC04581.1| ribonuclease III [Ruminococcus albus 8] Length = 232 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 122/225 (54%), Gaps = 4/225 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 + +KRIGY+F N LL +AL+HSS ++ ++ S ERLEFLGD +L +++S +F Sbjct: 6 NLAEFQKRIGYSFKNDRLLYEALSHSSFANENKKQRHSNERLEFLGDSVLSIVVSDYIFE 65 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF EGEL+ SLV + + + + +L +I + SI +D +E+ Sbjct: 66 HFKHLPEGELTKLRASLVCEKALFEFSHKFELGKYIFLGKGEELTGGRERASIVSDAMEA 125 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +IAA+YLDGG+E A + + + + + D KT LQE EY + Sbjct: 126 VIAAIYLDGGLEAARKHIMGFLPKDINPAHTETFHDYKTVLQEVIQRNPEEKIEYFLKGE 185 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDHD RFTV V+++ +G+ SK++AEQ AA E L GI Sbjct: 186 EGPDHDKRFTVQVKLNSNVIGEGVGRSKKSAEQNAAKEALDLMGI 230 >gi|315127397|ref|YP_004069400.1| RNase III, ds RNA [Pseudoalteromonas sp. SM9913] gi|315015911|gb|ADT69249.1| RNase III, ds RNA [Pseudoalteromonas sp. SM9913] Length = 225 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 79/219 (36%), Positives = 119/219 (54%), Gaps = 5/219 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L KRIGY FA++ LLE+A+TH S + ERLEFLGD IL +I+ L+ F Sbjct: 4 NVTELYKRIGYTFADQGLLEQAMTHRS---HKGQHNERLEFLGDSILSFVIANALYAKFP 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A+EG+LS ++LV +T ++ E +L ++R+ K S AD VE++I Sbjct: 61 KAREGDLSRMRSTLVRGQTLAEFGLEFELGDYLRLGPGELKSGGFRRESTLADAVEAIIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++LD I+ G + +++ R A+ G ++D KT LQE+ A+ P Y V G Sbjct: 121 AVFLDSDIDRCGELILAWYESRLDAISPGLNQKDPKTLLQEYLQARKLSLPGYTVVDTKG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H+ FTV + G+ + S+R AEQ AA + LK Sbjct: 181 QAHNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALK 219 >gi|221135073|ref|ZP_03561376.1| ribonuclease III [Glaciecola sp. HTCC2999] Length = 241 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 124/221 (56%), Gaps = 6/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + L++ I Y F + SLL++ALTH S +++ ERLEFLGD +LG+++ LF F + Sbjct: 21 FVKLQRLIDYQFNDVSLLKQALTHKSA---HRQHNERLEFLGDAVLGMIVGEHLFKAFPN 77 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 + EG+L+ +++V +T +++A E L FI++ + K SI ADVVES+I A Sbjct: 78 SPEGKLTRMRSAIVKGDTLAEIALEKGLGEFIQLGAGELKSGGKQRYSILADVVESIIGA 137 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD G+ F+ ++ R L +DAKT LQE+ ++ P Y+V G Sbjct: 138 IYLDAGMNQCYDFIHAWFGARIAKLDPDVHPKDAKTRLQEYLQSRGIELPVYEVVDIKGK 197 Query: 184 DHDPRFTVVV-EISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH+ FTV ++ P Q S++ AEQ+AA L++ Sbjct: 198 DHNQTFTVSCNTVTLSDPIQAQGASRKRAEQIAAQLTLEKL 238 >gi|23098981|ref|NP_692447.1| ribonuclease III [Oceanobacillus iheyensis HTE831] gi|38372423|sp|Q8ER05|RNC_OCEIH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|22777209|dbj|BAC13482.1| ribonuclease III [Oceanobacillus iheyensis HTE831] Length = 228 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 107/222 (48%), Gaps = 5/222 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 + LE+ +G +F ++LL++A THSS + +++ ERLEFLGD +L L +S L Sbjct: 1 MDIRPLEEHLGISFQQKALLKEAFTHSSYVNEHRKQRLSDNERLEFLGDAVLELAVSQYL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EGE++ ++V + A EL+ F+R+ ++ +I AD Sbjct: 61 YRNNKDMPEGEMTKLRAAIVCEPSLKNFAEELEFGKFLRLGKGEQQTGGRERPAILADAF 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+ + ALYLD G + F++ + + D K++LQE+ EY++ Sbjct: 121 EAFLGALYLDQGFDNVLDFLNIHVFPKLTTGAFSHAMDYKSQLQEFVQQHKDQKIEYRII 180 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP H+ F V I A G +K+ AEQ AA L Sbjct: 181 EEKGPSHNKEFVAEVVIQEKAAGIGTGRTKKEAEQRAAKNAL 222 >gi|322387562|ref|ZP_08061171.1| ribonuclease III [Streptococcus infantis ATCC 700779] gi|321141429|gb|EFX36925.1| ribonuclease III [Streptococcus infantis ATCC 700779] Length = 232 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 6/224 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + LE+R G F+++ LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ Sbjct: 6 TVLEQRFGLVFSDKQLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+LS +V E+ + AR+ FI++ K +I D E+ Sbjct: 66 YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + AL LD + F+ + + + +D KT LQE V Y+V Sbjct: 126 LGALLLDKDLLTVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRYQVISEI 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GP HD F V V + G + +G SK+ AEQ AA ++ EG+ Sbjct: 186 GPAHDKMFEVEVLVEGQSLGRGQGRSKKLAEQEAAKNAVE-EGL 228 >gi|227517298|ref|ZP_03947347.1| ribonuclease III [Enterococcus faecalis TX0104] gi|227554519|ref|ZP_03984566.1| ribonuclease III [Enterococcus faecalis HH22] gi|229547475|ref|ZP_04436200.1| ribonuclease III [Enterococcus faecalis TX1322] gi|229548050|ref|ZP_04436775.1| ribonuclease III [Enterococcus faecalis ATCC 29200] gi|256854772|ref|ZP_05560136.1| ribonuclease III [Enterococcus faecalis T8] gi|293385103|ref|ZP_06630929.1| ribonuclease III [Enterococcus faecalis R712] gi|293389076|ref|ZP_06633548.1| ribonuclease III [Enterococcus faecalis S613] gi|307270584|ref|ZP_07551882.1| ribonuclease III [Enterococcus faecalis TX4248] gi|307273593|ref|ZP_07554821.1| ribonuclease III [Enterococcus faecalis TX0855] gi|307284870|ref|ZP_07565026.1| ribonuclease III [Enterococcus faecalis TX0860] gi|307288870|ref|ZP_07568843.1| ribonuclease III [Enterococcus faecalis TX0109] gi|307292116|ref|ZP_07571982.1| ribonuclease III [Enterococcus faecalis TX0411] gi|312902145|ref|ZP_07761405.1| ribonuclease III [Enterococcus faecalis TX0470] gi|312905399|ref|ZP_07764513.1| ribonuclease III [Enterococcus faecalis TX0635] gi|312906714|ref|ZP_07765714.1| ribonuclease III [Enterococcus faecalis DAPTO 512] gi|312910825|ref|ZP_07769661.1| ribonuclease III [Enterococcus faecalis DAPTO 516] gi|312953196|ref|ZP_07772042.1| ribonuclease III [Enterococcus faecalis TX0102] gi|227075305|gb|EEI13268.1| ribonuclease III [Enterococcus faecalis TX0104] gi|227176317|gb|EEI57289.1| ribonuclease III [Enterococcus faecalis HH22] gi|229306839|gb|EEN72835.1| ribonuclease III [Enterococcus faecalis ATCC 29200] gi|229307399|gb|EEN73386.1| ribonuclease III [Enterococcus faecalis TX1322] gi|256710332|gb|EEU25376.1| ribonuclease III [Enterococcus faecalis T8] gi|291077580|gb|EFE14944.1| ribonuclease III [Enterococcus faecalis R712] gi|291081544|gb|EFE18507.1| ribonuclease III [Enterococcus faecalis S613] gi|306496769|gb|EFM66320.1| ribonuclease III [Enterococcus faecalis TX0411] gi|306500142|gb|EFM69486.1| ribonuclease III [Enterococcus faecalis TX0109] gi|306503129|gb|EFM72386.1| ribonuclease III [Enterococcus faecalis TX0860] gi|306509606|gb|EFM78648.1| ribonuclease III [Enterococcus faecalis TX0855] gi|306513165|gb|EFM81799.1| ribonuclease III [Enterococcus faecalis TX4248] gi|310627362|gb|EFQ10645.1| ribonuclease III [Enterococcus faecalis DAPTO 512] gi|310628813|gb|EFQ12096.1| ribonuclease III [Enterococcus faecalis TX0102] gi|310631128|gb|EFQ14411.1| ribonuclease III [Enterococcus faecalis TX0635] gi|311288848|gb|EFQ67404.1| ribonuclease III [Enterococcus faecalis DAPTO 516] gi|311290809|gb|EFQ69365.1| ribonuclease III [Enterococcus faecalis TX0470] gi|315026454|gb|EFT38386.1| ribonuclease III [Enterococcus faecalis TX2137] gi|315028377|gb|EFT40309.1| ribonuclease III [Enterococcus faecalis TX4000] gi|315031785|gb|EFT43717.1| ribonuclease III [Enterococcus faecalis TX0017] gi|315034802|gb|EFT46734.1| ribonuclease III [Enterococcus faecalis TX0027] gi|315145468|gb|EFT89484.1| ribonuclease III [Enterococcus faecalis TX2141] gi|315146605|gb|EFT90621.1| ribonuclease III [Enterococcus faecalis TX4244] gi|315151034|gb|EFT95050.1| ribonuclease III [Enterococcus faecalis TX0012] gi|315152764|gb|EFT96780.1| ribonuclease III [Enterococcus faecalis TX0031] gi|315154690|gb|EFT98706.1| ribonuclease III [Enterococcus faecalis TX0043] gi|315159400|gb|EFU03417.1| ribonuclease III [Enterococcus faecalis TX0312] gi|315161159|gb|EFU05176.1| ribonuclease III [Enterococcus faecalis TX0645] gi|315164397|gb|EFU08414.1| ribonuclease III [Enterococcus faecalis TX1302] gi|315167205|gb|EFU11222.1| ribonuclease III [Enterococcus faecalis TX1341] gi|315171217|gb|EFU15234.1| ribonuclease III [Enterococcus faecalis TX1342] gi|315172944|gb|EFU16961.1| ribonuclease III [Enterococcus faecalis TX1346] gi|315573246|gb|EFU85437.1| ribonuclease III [Enterococcus faecalis TX0309B] gi|315577147|gb|EFU89338.1| ribonuclease III [Enterococcus faecalis TX0630] gi|315581180|gb|EFU93371.1| ribonuclease III [Enterococcus faecalis TX0309A] gi|323479029|gb|ADX78468.1| ribonuclease III [Enterococcus faecalis 62] gi|327536218|gb|AEA95052.1| ribonuclease III [Enterococcus faecalis OG1RF] gi|329575676|gb|EGG57203.1| ribonuclease III [Enterococcus faecalis TX1467] Length = 243 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 5/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L++R G F + +LLE+A THSS + ++ ERLEFLGD +L L++S Sbjct: 14 MDNQLTTELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVS 73 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ F EG+L+ ++V ++ ++ A+E ++I + S+ Sbjct: 74 QYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLC 133 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD + A F++ + D KT+LQE K V+ EY Sbjct: 134 DLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHEMDHKTQLQEVLQRKGDVSIEY 193 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++ GP HD F V ++G G SK+ AEQ AA LK Sbjct: 194 RLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALK 239 >gi|190149854|ref|YP_001968379.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914985|gb|ACE61237.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 226 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 1 MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 58 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 118 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 177 Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 178 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLVKL 223 >gi|119471905|ref|ZP_01614213.1| RNase III, ds RNA [Alteromonadales bacterium TW-7] gi|119445278|gb|EAW26568.1| RNase III, ds RNA [Alteromonadales bacterium TW-7] Length = 225 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 114/219 (52%), Gaps = 5/219 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L +IGY F+++ LLE+A+TH S + ERLEFLGD IL +I+ L+ F Sbjct: 4 NVTELYNKIGYEFSDQGLLEQAMTHRS---HKGQHNERLEFLGDSILSFVIANALYAKFP 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A+EG+LS ++LV +T ++ E L ++R+ K S AD VE++I Sbjct: 61 KAREGDLSRMRSTLVRGQTLAEFGVEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +LD GIE + +++ R A+ G ++D KT LQE + P Y V G Sbjct: 121 AAFLDSGIERCSELILSWYESRLDAISPGLNQKDPKTLLQEHLQGRKLPLPGYTVVDTKG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H+ FTV + G+ + S+R AEQ AA + LK Sbjct: 181 QAHNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALK 219 >gi|167765553|ref|ZP_02437617.1| hypothetical protein CLOSS21_00047 [Clostridium sp. SS2/1] gi|317498509|ref|ZP_07956803.1| ribonuclease III [Lachnospiraceae bacterium 5_1_63FAA] gi|167712738|gb|EDS23317.1| hypothetical protein CLOSS21_00047 [Clostridium sp. SS2/1] gi|291559019|emb|CBL37819.1| RNAse III [butyrate-producing bacterium SSC/2] gi|316894202|gb|EFV16390.1| ribonuclease III [Lachnospiraceae bacterium 5_1_63FAA] Length = 228 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 113/226 (50%), Gaps = 5/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M A +++IG F S L A HSS ++ + ++ ERLEFLGD +L L+ S Sbjct: 1 MDAKSVEEFQEQIGIKFHEPSRLWNAFIHSSYANERRMSKDKNNERLEFLGDAVLELVTS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS SLV T + AR+++L ++ +S SI + Sbjct: 61 NYLYRTYQKESEGKLSKIRASLVCEPTLAGCARDINLGKYVLLSKGEDMTGGRSRDSILS 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D E++I A+YLD GIE A F++ Y + +++ DAKT LQE + +Y Sbjct: 121 DAFEAVIGAIYLDQGIETATKFIETYLFK-DVENKVLFFDAKTNLQEIVQGEGKGRLKYV 179 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + GPDH FTV + G SK++AEQ AA E +KR Sbjct: 180 LVGEEGPDHAKIFTVEARLGENVIGTGSGHSKKSAEQHAAFEAIKR 225 >gi|332289238|ref|YP_004420090.1| ribonuclease III [Gallibacterium anatis UMN179] gi|330432134|gb|AEC17193.1| ribonuclease III [Gallibacterium anatis UMN179] Length = 226 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 117/228 (51%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L+ ++ Y F +LL++ALTH S + + ERLEFLGD IL I L+ Sbjct: 1 MNNQHLDRLQNKLSYQFKKMALLQQALTHRSAASEH---NERLEFLGDSILNFTIGEALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F + EG+LS +LV +T +Q+A E DL ++++ K +SI +D VE Sbjct: 58 HQFPKSAEGDLSRMRATLVREQTLAQIAIEFDLGEYLKLGPGELKSGGYRRSSILSDCVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD E + +++QR +K G ++D KT LQE+ P Y V Sbjct: 118 AIIGAIYLDSNFEKVKETILNWYQQRLAEIKPGDNQKDPKTRLQEYLQGIRQPLPTYNVV 177 Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V +I +G+ S+R AEQ AA ++L I Sbjct: 178 EIKGEAHNQTFKVTCKISQSDTLFEGIGSSRRKAEQAAAEKILSALKI 225 >gi|323351215|ref|ZP_08086871.1| ribonuclease III [Streptococcus sanguinis VMC66] gi|322122439|gb|EFX94150.1| ribonuclease III [Streptococcus sanguinis VMC66] gi|324991496|gb|EGC23429.1| ribonuclease III [Streptococcus sanguinis SK353] gi|328946755|gb|EGG40893.1| ribonuclease III [Streptococcus sanguinis SK1087] Length = 232 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + LE+ F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENLKKALLEQ-FDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E +F+ + + +++G F R D KT+LQE V Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIT 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V +GP H F V V I+G QG SK+ AEQ AA ++E Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227 >gi|239993708|ref|ZP_04714232.1| ribonuclease III [Alteromonas macleodii ATCC 27126] Length = 228 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 6/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +Y L K IGY F N +LLE+ALTH S + + ERLEFLGD ILG+++ LF F Sbjct: 6 KYRRLYKAIGYTFTNEALLEQALTHRSAAKQH---NERLEFLGDAILGMIVGETLFKRFP 62 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+L+ ++LV +T +++A+E + + + K +SI AD VE+++ Sbjct: 63 TVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAVEAILG 122 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G++ +D+ W+ R L +D+KT LQE+ + P Y+V SG Sbjct: 123 AIYLDSGMDEVRGVIDRLWETRINKLDPNAHPKDSKTRLQEFLQGRKQALPTYEVLSISG 182 Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223 DH F V ++ L A S+R AEQ AA L++ Sbjct: 183 KDHAQTFEVSCQVESLPEAVVASGNSRRKAEQEAARLTLEKL 224 >gi|327461014|gb|EGF07347.1| ribonuclease III [Streptococcus sanguinis SK1057] Length = 232 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 117/229 (51%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + + LE+ FA+ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENFKKALLEQ-FDLVFADETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E +F+ + + +++G F R D KT+LQE V Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIT 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V +GP H F V V I+G QG SK+ AEQ AA ++E Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227 >gi|322389960|ref|ZP_08063500.1| ribonuclease III [Streptococcus parasanguinis ATCC 903] gi|321143396|gb|EFX38834.1| ribonuclease III [Streptococcus parasanguinis ATCC 903] Length = 242 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 8/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L +R F++ SLL+ A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 10 MEKLQ-TLLSERFQIVFSDSSLLDTAFTHTSYANEHRLLKISHNERLEFLGDAVLQLVIS 68 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + +R+ +I++ K +I Sbjct: 69 EYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDHYIKLGKGEEKSGGRDRDTILG 128 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E F+ + + +++G+F + D KT LQE V + Sbjct: 129 DLFEAFLGALLLDQGVEAVKRFIYQVMIPK-VETGQFSQVIDYKTRLQELLQVHGDVEIQ 187 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y+V SGP H F V V ++G G SK+ AEQ AA ++ Sbjct: 188 YQVVSESGPAHAKEFEVEVFVNGKTLGHGHGRSKKLAEQEAARNAVE 234 >gi|260913782|ref|ZP_05920258.1| ribonuclease III [Pasteurella dagmatis ATCC 43325] gi|260632321|gb|EEX50496.1| ribonuclease III [Pasteurella dagmatis ATCC 43325] Length = 225 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 7/224 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L++++GY+F SLLE+ALTH S S ++ ERLEFLGD IL L I+ L+ Sbjct: 1 MNK-NLERLQRKLGYSFNQVSLLEQALTHRSASINH---NERLEFLGDAILNLTIAEALY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ +L ++ + K SI AD VE Sbjct: 57 HQFPKCNEGELSRMRATLVREPTLAILARKFELGDYLSLGPGELKSGGFRRESILADCVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD + V ++K +K G ++D KT LQE+ K P Y V Sbjct: 117 AIIGAISLDSNLPKTSKIVCNWYKSLLEEIKPGDNQKDPKTRLQEYLQGKRLPLPNYNVV 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 G H FTV + + G+ S+R AEQ AA ++L+ Sbjct: 177 DIKGEAHCQTFTVECYVKNIDRTFIGIGASRRKAEQAAAEKILQ 220 >gi|119944412|ref|YP_942092.1| ribonuclease III [Psychromonas ingrahamii 37] gi|189043334|sp|A1SSM8|RNC_PSYIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|119863016|gb|ABM02493.1| RNAse III [Psychromonas ingrahamii 37] Length = 228 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 79/218 (36%), Positives = 114/218 (52%), Gaps = 5/218 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+R+ Y F++ SLL++ALTH S ERLEFLGD IL IST L+ F Sbjct: 7 ELKRLERRVDYTFSDFSLLQQALTHRSA---LGNHNERLEFLGDSILSYAISTDLYARFP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +LV + +++ RE L + + K SI AD VE++I Sbjct: 64 KVDEGDLSRMRATLVCGKMLAEIGREFQLGDCLILGPGELKSGGFRRDSIIADGVEAIIG 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +LD I+ + K++ R ++ G ++D KT LQE ++ P Y+V G Sbjct: 124 AAFLDSDIDTVKKLILKWFDSRLNTIEPGISQKDPKTRLQEHLQSRKQPLPIYEVLEIKG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H+ RFT+ I GL QG S+R AEQ+AA ++L Sbjct: 184 EAHNQRFTMSCSIDGLKSVQGQGTSRRKAEQIAANKML 221 >gi|53804477|ref|YP_113920.1| ribonuclease III [Methylococcus capsulatus str. Bath] gi|81682093|sp|Q608M7|RNC_METCA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|53758238|gb|AAU92529.1| ribonuclease III [Methylococcus capsulatus str. Bath] Length = 230 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 6/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L +++G F + LL ALTH S + ERLEFLGD +LG +++ L+ F Sbjct: 4 SHEHLARKLGIPFRDPGLLRNALTHRSA---EGVNNERLEFLGDSVLGFVVTEYLYQRFP 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 SA EG LS +LV+ + +++AREL+L ++ + S K SI +D +E+++ Sbjct: 61 SADEGVLSRLRATLVNETSLARIARELELGEYLILGSGELKSGGYRRDSILSDALEAILG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+ D GI+ + +++ AL +++D KT LQE + P Y + +SG Sbjct: 121 AVLRDQGIDACRALILTLFERPLSALSLDDWKKDPKTRLQELMQGRGLPLPVYTLIDQSG 180 Query: 183 PDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 HD F V E+ + P G S++ AEQ AA +L R Sbjct: 181 LPHDQHFRVRCEVPLAVEPCVGEGSSRKKAEQQAAENMLSRL 222 >gi|260892849|ref|YP_003238946.1| ribonuclease III [Ammonifex degensii KC4] gi|260864990|gb|ACX52096.1| ribonuclease III [Ammonifex degensii KC4] Length = 235 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 112/224 (50%), Gaps = 4/224 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + + L+ ++G ++ LL ALTH S ++ + E +RLEFLGD +L L++S L+ Sbjct: 1 MGLAKLKDKLGISWKEEKLLRLALTHPSYAYEHPGVEHNQRLEFLGDSVLSLVVSDYLYR 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EGEL+ ++V + ++VA EL + + + K S+ AD E+ Sbjct: 61 TFPEKSEGELTRLRAAVVCEASLARVAEELGIGEALLLGRGEEKSGGRKRPSLLADAFEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A+YLD G+EVA F + + + G+ RD KTELQE Y+V Sbjct: 121 LLGAIYLDQGLEVASAFALHLLRPVLQDVLEGRVERDYKTELQELLQKGSPEKIVYEVLQ 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH RF V V G +G SK+ AEQ AA E + Sbjct: 181 EEGPDHAKRFLVGVYYQGKCLGRGEGRSKKEAEQRAAREAWLKL 224 >gi|240850197|ref|YP_002971590.1| ribonuclease III [Bartonella grahamii as4aup] gi|240267320|gb|ACS50908.1| ribonuclease III [Bartonella grahamii as4aup] Length = 235 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 119/226 (52%), Positives = 151/226 (66%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L L K G+ F + L+KALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 1 MKRLMIDQLFKLTGHRFKDEERLKKALTHSSVQDSEQGNYERLEFLGDRVLGLLIAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +ARE+ L IRV +++ + ++ ADVVE Sbjct: 61 QLFPQASEGELSVRLNHLVNAQTCADIAREMRLPDMIRVGFEMKNFEGRRLINMHADVVE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG+E F+ KYW RA K RRDAKTELQEWAH + P Y+V R Sbjct: 121 ALIAVIYLDGGLESVRPFIQKYWHSRAKKMDAGRRDAKTELQEWAHIQGNAQPHYQVIKR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDP F V V ISG A G SKR AE++AA ++L+REG+W Sbjct: 181 SGPDHDPVFMVEVSISGFASEIGQGSSKRYAERMAAEKILRREGVW 226 >gi|302389624|ref|YP_003825445.1| RNAse III [Thermosediminibacter oceani DSM 16646] gi|302200252|gb|ADL07822.1| RNAse III [Thermosediminibacter oceani DSM 16646] Length = 241 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 107/223 (47%), Gaps = 6/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLF 60 L++ +G F + ++L +A H S ++ +QE +RLEFLGD +L L+IS ++ Sbjct: 10 ELKKLQQILGVDFDDLNILNQAFIHPSYAYEKGLSHQEHNQRLEFLGDAVLELVISEWIY 69 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + + EGEL+ LV E+ + ++REL L F+ + SI AD E Sbjct: 70 DKYPNYTEGELTKLRALLVCEESLAYLSRELTLGDFLIMGKGEEITGGREKASILADTFE 129 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD G FV + +K ++ GK D KT LQE Y V Sbjct: 130 ALIGAMYLDKGFGAITGFVREKFKPVMERAEKGKLFPDYKTALQEMLQRISPDRITYNVI 189 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDH+ F V V G SK+ AEQ AA ++ Sbjct: 190 KEEGPDHNKTFFVEVVWKNKILGSGCGKSKKEAEQNAAKAAIR 232 >gi|317057716|ref|YP_004106183.1| ribonuclease III [Ruminococcus albus 7] gi|315449985|gb|ADU23549.1| ribonuclease III [Ruminococcus albus 7] Length = 232 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 119/224 (53%), Gaps = 4/224 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62 +K+IGY F N LL +AL+HSS ++ ++ S ERLEFLGD +L +++S +F H Sbjct: 7 LEAFQKKIGYHFKNEKLLYEALSHSSFANENKKQRHSNERLEFLGDSVLSIVVSDHIFEH 66 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EGEL+ SLV + + + +++L +I + SI +D +E++ Sbjct: 67 FKHLPEGELTKLRASLVCEKALFEFSHKIELGKYIFLGKGEELTGGRERASIVSDAMEAV 126 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 IAA+YLDGG+E A + + + + D KT LQE EY + Sbjct: 127 IAAIYLDGGLEAARKHIMNFLPKDLNPAHTDTFHDYKTVLQEIIQRNPEEKVEYFLKGED 186 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDHD RFTV V+++ +G+ SK+ AEQ AA E L G+ Sbjct: 187 GPDHDKRFTVQVKLNNNVIGEGIGRSKKNAEQNAAKEALALMGV 230 >gi|153810622|ref|ZP_01963290.1| hypothetical protein RUMOBE_01006 [Ruminococcus obeum ATCC 29174] gi|149833018|gb|EDM88100.1| hypothetical protein RUMOBE_01006 [Ruminococcus obeum ATCC 29174] Length = 223 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 77/207 (37%), Positives = 111/207 (53%), Gaps = 5/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 LE+ IGY F N+ LL++ALTHSS ++ + ERLEFLGD +L L+ S L+ Sbjct: 2 EQLEQIIGYTFQNKKLLKQALTHSSYANEKKLGKLGCNERLEFLGDAVLELISSDFLYAK 61 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EGEL+ + SLV + + AR+ L ++ + SI +D E+L Sbjct: 62 FTQVPEGELTKKRASLVCEPSLAYCARQFGLPQYLLLGKGENMTGGRNRDSIVSDATEAL 121 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + A+YLDGG E A FV K+ ++ + D+KT LQE K EY +T SG Sbjct: 122 LGAIYLDGGFEPAKDFVLKFIL-NDIEHKQLFYDSKTILQEIVQEKGIQPVEYILTGESG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDHD +FTV V+++G G +K+ Sbjct: 181 PDHDKQFTVSVQVNGQVVGNGTGHTKK 207 >gi|327470651|gb|EGF16107.1| ribonuclease III [Streptococcus sanguinis SK330] Length = 232 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + LE+ F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENLKKALLEQ-FDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E +F+ + + +++G F R D KT+LQE V Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIA 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V +GP H F V V I+G QG SK+ AEQ AA K+E Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGCKSGQGQGRSKKLAEQEAAKNAFKKE 227 >gi|90407379|ref|ZP_01215564.1| ribonuclease III [Psychromonas sp. CNPT3] gi|90311530|gb|EAS39630.1| ribonuclease III [Psychromonas sp. CNPT3] Length = 231 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 116/222 (52%), Gaps = 5/222 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LE+RIGY F N +LL++ALTH S ERLEFLGD IL +IST L+ Sbjct: 5 MKETELKRLERRIGYKFNNFALLKQALTHRSA---LGAHNERLEFLGDSILSFVISTDLY 61 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+LS +LV + +++ RE +L + + K SI AD VE Sbjct: 62 LRFPKVNEGDLSRMRATLVCGKMLAEIGREFELGDSLILGPGELKSGGFRRDSIIADGVE 121 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 S+I A++LD I V ++ R ++ G ++D KT LQE ++ P Y+V Sbjct: 122 SIIGAVFLDSDINSVDRLVLAWFNSRLTTIEPGIGQKDPKTRLQEHLQSRKQGLPLYEVL 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 G H+ RFT+ I G+ QG S+R AEQ+AA ++L Sbjct: 182 EIRGEAHNQRFTMSCIIDGIEAVQGQGTSRRKAEQIAAEKML 223 >gi|332140432|ref|YP_004426170.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype'] gi|327550454|gb|AEA97172.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype'] Length = 228 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 6/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +Y L K IGY F N +LLE+ALTH S + + ERLEFLGD ILG++I LF F Sbjct: 6 KYLRLYKAIGYTFNNEALLEQALTHRSAAKQH---NERLEFLGDAILGMIIGETLFKRFP 62 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+L+ ++LV +T +++A+E + + + K +SI AD VE+++ Sbjct: 63 TVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAVEAILG 122 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G++ +D+ W+ R L +D+KT LQE+ + P Y+V SG Sbjct: 123 AIYLDSGMDEVRGVIDRLWESRINQLDPNAHPKDSKTRLQEFLQGRKQALPTYEVLSISG 182 Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223 DH F V ++ L A S+R AEQ AA L++ Sbjct: 183 KDHAQTFEVCCKVESLPDAVVASGNSRRKAEQEAARLTLEKL 224 >gi|307276679|ref|ZP_07557797.1| ribonuclease III [Enterococcus faecalis TX2134] gi|306506789|gb|EFM75941.1| ribonuclease III [Enterococcus faecalis TX2134] Length = 243 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 5/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L++R G F + +LLE+A THSS + ++ ERLEFLGD +L L++S Sbjct: 14 MDNQLTTELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVS 73 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ F EG+L+ ++V ++ ++ A+E ++I + S+ Sbjct: 74 QYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLC 133 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD + A F++ + D KT+LQE K V+ EY Sbjct: 134 DLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHELDHKTQLQEVLQRKGDVSIEY 193 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++ GP HD F V ++G G SK+ AEQ AA LK Sbjct: 194 RLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALK 239 >gi|125718368|ref|YP_001035501.1| ribonuclease III [Streptococcus sanguinis SK36] gi|189043368|sp|A3CP46|RNC_STRSV RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|125498285|gb|ABN44951.1| Ribonuclease III, putative [Streptococcus sanguinis SK36] gi|324994823|gb|EGC26736.1| ribonuclease III [Streptococcus sanguinis SK678] gi|325687264|gb|EGD29286.1| ribonuclease III [Streptococcus sanguinis SK72] gi|325694850|gb|EGD36755.1| ribonuclease III [Streptococcus sanguinis SK150] gi|332358679|gb|EGJ36502.1| ribonuclease III [Streptococcus sanguinis SK355] gi|332358950|gb|EGJ36771.1| ribonuclease III [Streptococcus sanguinis SK49] Length = 232 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + LE+ F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENLKKALLEQ-FDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E +F+ + + +++G F R D KT+LQE V Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIA 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V +GP H F V V I+G QG SK+ AEQ AA ++E Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227 >gi|315634822|ref|ZP_07890104.1| ribonuclease III [Aggregatibacter segnis ATCC 33393] gi|315476374|gb|EFU67124.1| ribonuclease III [Aggregatibacter segnis ATCC 33393] Length = 226 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 115/228 (50%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L+++I Y F + +LL++ALTH S H++ ERLEFLGD IL L I+ LF Sbjct: 1 MREDNLDRLQRKIDYHFQDVALLKQALTHRSAGHNH---NERLEFLGDAILNLTIAEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ L ++ + K SI AD VE Sbjct: 58 HLFPKCNEGELSRMRATLVREPTLAILARDFQLGDYLSLGQGELKSGGFRRESILADCVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD + A V+++++ +K G ++DAKT LQE+ P Y V Sbjct: 118 AIIGAISLDSSLTHATQIVNRWYQTLLENIKPGDNQKDAKTRLQEYLQGNRQPLPTYNVV 177 Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V I G S+R AEQ AA ++L+ I Sbjct: 178 SIQGEAHNQLFIVECSISDNDRTFIGKGSSRRKAEQAAAEQILQELNI 225 >gi|261368258|ref|ZP_05981141.1| ribonuclease III [Subdoligranulum variabile DSM 15176] gi|282569773|gb|EFB75308.1| ribonuclease III [Subdoligranulum variabile DSM 15176] Length = 225 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 118/226 (52%), Gaps = 8/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57 M+ + L++ + Y F N +LL ALTH+S ++ + ERLEFLGD +L ++ + Sbjct: 1 MATHKPEELQEVLHYQFKNPALLRIALTHTSYANESKVPTTHNERLEFLGDSVLSVVAAD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF+ EGEL+ SLVS + Q A+E+ L ++R+ S+ +D Sbjct: 61 YLFHQ-SDRPEGELTRMRASLVSEDALFQFAQEIRLGDYLRLGHGEDLGGGRNRPSVVSD 119 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++IAALYLDGG+EVA +F+ + + D KT LQE Y+V Sbjct: 120 AFEAVIAALYLDGGLEVARSFILPFLSE----GKTAEEDYKTRLQEVVQQNPSARLRYEV 175 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GPDH +FTV V A+G+ SK+AAEQ AA + L R Sbjct: 176 EGETGPDHAKQFTVAVYCDDKRLAEGVGRSKKAAEQHAAKQALDRL 221 >gi|293365563|ref|ZP_06612272.1| ribonuclease III [Streptococcus oralis ATCC 35037] gi|315613276|ref|ZP_07888185.1| ribonuclease III [Streptococcus sanguinis ATCC 49296] gi|291315931|gb|EFE56375.1| ribonuclease III [Streptococcus oralis ATCC 35037] gi|315314511|gb|EFU62554.1| ribonuclease III [Streptococcus sanguinis ATCC 49296] Length = 232 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+KR FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + +D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +VT +GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 180 QVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226 >gi|146341377|ref|YP_001206425.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS278] gi|146194183|emb|CAL78204.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS278] Length = 357 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 100/217 (46%), Positives = 137/217 (63%), Gaps = 3/217 (1%) Query: 12 RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 RIG+ FA+ SLL A TH S S +SY+RLEFLGD +LGL++S +L+ F SA E Sbjct: 134 RIGHRFADPSLLSTAFTHVSALKSSKKRGDSYQRLEFLGDHVLGLIVSDMLYRAFPSADE 193 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS R LV E+C+ VA+ L L I++ + S+ DV E++I A++L Sbjct: 194 GELSKRLADLVRKESCADVAKSLGLLDDIKLGAVGAGAGARLRKSVLGDVCEAVIGAIFL 253 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG A FV++ W +R K + RD KT LQEWA K TP Y+ R+GP HDP+ Sbjct: 254 DGGYTAAAGFVERNWTERMRKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQ 313 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 F V V++ GL PA+G+ SKRAAE+VAA+ +++REG+ Sbjct: 314 FRVAVDLPGLEPAEGVGGSKRAAEKVAASVMIEREGV 350 >gi|306825115|ref|ZP_07458457.1| ribonuclease III [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432551|gb|EFM35525.1| ribonuclease III [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 232 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+KR FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + +D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +VT +GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 180 QVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226 >gi|261868615|ref|YP_003256537.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413947|gb|ACX83318.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D11S-1] Length = 226 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + L+++I Y F N LL++ALTH S H + ERLEFLGD IL L I LF Sbjct: 1 MKENQLERLQRQINYRFQNIELLKQALTHRSAGHQH---NERLEFLGDAILNLTIGEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ L +I + K SI AD VE Sbjct: 58 HQFPKCNEGELSRMRATLVREPTLALLARDFKLGDYILLGQGELKSGGFRRESILADCVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD + A V ++++ + +K G ++DAKT LQE+ P Y + Sbjct: 118 AIIGAISLDSSLTNATQIVCQWYQNLLKEIKPGDNQKDAKTRLQEYLQGNRLPLPTYNIV 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V I G S+R AEQ AA ++L+ I Sbjct: 178 NIQGEAHNQLFIVECSIQNSDRTFIGKGSSRRKAEQAAAEQILQELNI 225 >gi|302670933|ref|YP_003830893.1| ribonuclease III Rnc [Butyrivibrio proteoclasticus B316] gi|302395406|gb|ADL34311.1| ribonuclease III Rnc [Butyrivibrio proteoclasticus B316] Length = 230 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 117/224 (52%), Gaps = 5/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 ++ ++ IGY F N LL +ALTHSS + + YERLEFLGD IL ++ S Sbjct: 2 LNEQEIINFQQVIGYKFKNIDLLIQALTHSSFVNEQKINKKPDYERLEFLGDAILEMVSS 61 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + KEGE+S SLV + A ++L +I++ SI A Sbjct: 62 EYLFKKYPDKKEGEMSKIRASLVCEPALAFCAEHIELKKYIQLGKGEELTGGRNKESIIA 121 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 DV+E++I AL+LDGG++ + F+D Y A S D+K+ LQE+ A +Y+ Sbjct: 122 DVMEAVIGALFLDGGLQESKRFIDTYVLTNA-DSMAMFNDSKSLLQEFVQAGGLGQIKYE 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + SGP+HD F V V I +G +K+AAEQ AA + L Sbjct: 181 ICGESGPEHDKIFDVRVWIGDKNMGEGTGKTKKAAEQKAAYQAL 224 >gi|293391848|ref|ZP_06636182.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952382|gb|EFE02501.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D7S-1] Length = 226 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + L+++I Y F N LL++ALTH S H + ERLEFLGD IL L I LF Sbjct: 1 MKENQLERLQRQINYRFQNIELLKQALTHRSAGHQH---NERLEFLGDAILNLTIGEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ L +I + K SI AD VE Sbjct: 58 HQFPKCNEGELSRMRATLVREPTLALLARDFKLGDYILLGQGELKSGGFRRESILADCVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD + A V ++++ + +K G ++DAKT LQE+ P Y + Sbjct: 118 AIIGAISLDSNLTNATQIVCQWYQNLLKEIKPGDNQKDAKTRLQEYLQGNRLPLPTYNIV 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V I G S+R AEQ AA ++L+ I Sbjct: 178 NIQGEAHNQLFIVECSIQNSDRTFIGKGSSRRKAEQAAAEQILQELNI 225 >gi|229828999|ref|ZP_04455068.1| hypothetical protein GCWU000342_01084 [Shuttleworthia satelles DSM 14600] gi|229792162|gb|EEP28276.1| hypothetical protein GCWU000342_01084 [Shuttleworthia satelles DSM 14600] Length = 230 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 +R TLE +IGY F ++SLL +ALTHSS ++ ERLEFLGD +L ++ S L Sbjct: 1 MRNETLEAKIGYQFQDKSLLRQALTHSSFANERHMKAHSDNERLEFLGDAVLEVVSSEFL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + ++ EG L+ SLV T + ARE+ L + +R++ + SI +D + Sbjct: 61 YLNYPDLPEGRLTPLRASLVCEPTLAIAAREIGLGACLRLARGEDQSGGRERDSILSDAL 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++I A++LDGGIE A + +Y ++ K D+KT LQE A + +Y + Sbjct: 121 EAVIGAVFLDGGIEPAKALIIRYILT-DIEHKKLYHDSKTRLQEMVQAMEEASLDYVLVR 179 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDH RF + G +G SK+A+EQ AA + L Sbjct: 180 EEGPDHAKRFVTEARLDGRTIGRGEGGSKKASEQEAAYQGL 220 >gi|78044311|ref|YP_360276.1| ribonuclease III [Carboxydothermus hydrogenoformans Z-2901] gi|90101616|sp|Q3AC58|RNC_CARHZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|77996426|gb|ABB15325.1| ribonuclease III [Carboxydothermus hydrogenoformans Z-2901] Length = 235 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 117/227 (51%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M +LEK +G+ F N S+L A+TH S + + E ERLEFLGD +L L IS Sbjct: 1 MDKENLISLEKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFIS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F EG+L+ + LV AE+ ++A +++L F+R+ K + S A Sbjct: 61 DYLFRTFPQKSEGDLTKLRSRLVCAESLYELAFKINLDKFLRLGKGEFKAGGNQRMSNLA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPE 174 + VE++I A+Y D GIE A +F+ + + ++ + +D KT LQE + Sbjct: 121 NAVEAVIGAVYFDCGIEAAFSFITRLYGEKLKPENLEQLPKDEKTTLQELLQKEKNNVLR 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y++ GP H FT V I+ A G SK+ AEQ AA + L+ Sbjct: 181 YEILLEEGPPHQKIFTAGVIINDKLIATGRGKSKKEAEQEAAKKALE 227 >gi|301058150|ref|ZP_07199202.1| ribonuclease III [delta proteobacterium NaphS2] gi|300447782|gb|EFK11495.1| ribonuclease III [delta proteobacterium NaphS2] Length = 236 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + +L + +GY+F + +L+ +A HSS + E ERLEFLGD +L L +S LL Sbjct: 9 EFKSLCETLGYSFNDIALVIQAFRHSSYVNEQMVPGLEDNERLEFLGDAVLDLAVSHLLM 68 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 A EGELS + +V VA L+L ++ + + + SI ADV E Sbjct: 69 ERNPHANEGELSRFRSMVVDEAGLHDVATRLELGRYLLLGKGEDQSLGRQKPSILADVTE 128 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +L+ A+YLDGG ++ ++K + + + +D K+ LQE+ F P+Y++T Sbjct: 129 ALLGAIYLDGGFDITKKVIEKLFAPLLEKVGTDDLVQDYKSLLQEFTQQAFKCLPQYRLT 188 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP HD F +V+ ++G+ A+GM SK+ AEQ AA E R Sbjct: 189 EEKGPAHDKVFCIVLAVNGIVMAEGMGKSKKEAEQHAAKEAFLRL 233 >gi|296876109|ref|ZP_06900163.1| ribonuclease III [Streptococcus parasanguinis ATCC 15912] gi|296432820|gb|EFH18613.1| ribonuclease III [Streptococcus parasanguinis ATCC 15912] Length = 233 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 8/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L +R F++ SLL+ A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MEKLQ-ALLLERFQIVFSDSSLLDTAFTHTSYANEHRLLKISHNERLEFLGDAVLQLVIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + +R+ +I++ K +I Sbjct: 60 EYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDRYIKLGKGEEKSGGRDRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E F+ + + +++G+F + D KT LQE V + Sbjct: 120 DLFEAFLGALLLDQGVEAVKRFIYQVMIPK-VETGQFSQVIDYKTRLQELLQVHGDVEIQ 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y+V SGP H F V V ++G G SK+ AEQ AA ++ Sbjct: 179 YQVVSESGPAHAKEFEVEVFVNGQTMGHGHGRSKKLAEQEAARNAVE 225 >gi|124515064|gb|EAY56575.1| ribonuclease III [Leptospirillum rubarum] Length = 247 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 7/226 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLL 59 S LE R+ Y F LLE+A TH S + + + ERLEFLGD +LGL+++ L Sbjct: 6 DLSELEDRLRYRFRKIDLLEEATTHKSFMNEGRRLGVTRNNERLEFLGDTVLGLVVAEYL 65 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG LS +VS T + V+R L + F+ + +S+ AD + Sbjct: 66 MVTYPKYPEGILSKFKGRVVSEPTLASVSRALGIGGFLLIGKGEELTQGREKSSLLADAM 125 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++IAA+YLD G++ A TF+ +++ ++ +D KT+LQE+ + P Y+V Sbjct: 126 EAVIAAIYLDSGLDAARTFIIGHFRSVIEQTVHEDSIQDYKTDLQEYCQRELETLPVYQV 185 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GPDH F V V I G +G SK+ AEQ AA + L R Sbjct: 186 MDQRGPDHQKEFDVAVLIRGKIYGEGSGKSKKEAEQKAAKDALSRL 231 >gi|29377554|ref|NP_816708.1| ribonuclease III [Enterococcus faecalis V583] gi|255970707|ref|ZP_05421293.1| ribonuclease III [Enterococcus faecalis T1] gi|255974283|ref|ZP_05424869.1| ribonuclease III [Enterococcus faecalis T2] gi|256618145|ref|ZP_05474991.1| ribonuclease III [Enterococcus faecalis ATCC 4200] gi|256761074|ref|ZP_05501654.1| ribonuclease III [Enterococcus faecalis T3] gi|256958378|ref|ZP_05562549.1| ribonuclease III [Enterococcus faecalis DS5] gi|256960445|ref|ZP_05564616.1| ribonuclease III [Enterococcus faecalis Merz96] gi|256962935|ref|ZP_05567106.1| ribonuclease III [Enterococcus faecalis HIP11704] gi|257078311|ref|ZP_05572672.1| ribonuclease III [Enterococcus faecalis JH1] gi|257080500|ref|ZP_05574861.1| ribonuclease III [Enterococcus faecalis E1Sol] gi|257083236|ref|ZP_05577597.1| ribonuclease III [Enterococcus faecalis Fly1] gi|257088212|ref|ZP_05582573.1| ribonuclease III [Enterococcus faecalis D6] gi|257091337|ref|ZP_05585698.1| ribonuclease III [Enterococcus faecalis CH188] gi|257417226|ref|ZP_05594220.1| ribonuclease III [Enterococcus faecalis AR01/DG] gi|257417943|ref|ZP_05594937.1| ribonuclease III [Enterococcus faecalis T11] gi|257420449|ref|ZP_05597439.1| ribonuclease III [Enterococcus faecalis X98] gi|294780225|ref|ZP_06745597.1| ribonuclease III [Enterococcus faecalis PC1.1] gi|300861565|ref|ZP_07107649.1| ribonuclease III [Enterococcus faecalis TUSoD Ef11] gi|75541427|sp|Q82ZG1|RNC_ENTFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|29345021|gb|AAO82778.1| ribonuclease III [Enterococcus faecalis V583] gi|255961725|gb|EET94201.1| ribonuclease III [Enterococcus faecalis T1] gi|255967155|gb|EET97777.1| ribonuclease III [Enterococcus faecalis T2] gi|256597672|gb|EEU16848.1| ribonuclease III [Enterococcus faecalis ATCC 4200] gi|256682325|gb|EEU22020.1| ribonuclease III [Enterococcus faecalis T3] gi|256948874|gb|EEU65506.1| ribonuclease III [Enterococcus faecalis DS5] gi|256950941|gb|EEU67573.1| ribonuclease III [Enterococcus faecalis Merz96] gi|256953431|gb|EEU70063.1| ribonuclease III [Enterococcus faecalis HIP11704] gi|256986341|gb|EEU73643.1| ribonuclease III [Enterococcus faecalis JH1] gi|256988530|gb|EEU75832.1| ribonuclease III [Enterococcus faecalis E1Sol] gi|256991266|gb|EEU78568.1| ribonuclease III [Enterococcus faecalis Fly1] gi|256996242|gb|EEU83544.1| ribonuclease III [Enterococcus faecalis D6] gi|257000149|gb|EEU86669.1| ribonuclease III [Enterococcus faecalis CH188] gi|257159054|gb|EEU89014.1| ribonuclease III [Enterococcus faecalis ARO1/DG] gi|257159771|gb|EEU89731.1| ribonuclease III [Enterococcus faecalis T11] gi|257162273|gb|EEU92233.1| ribonuclease III [Enterococcus faecalis X98] gi|294452768|gb|EFG21198.1| ribonuclease III [Enterococcus faecalis PC1.1] gi|295114417|emb|CBL33054.1| RNAse III [Enterococcus sp. 7L76] gi|300849026|gb|EFK76779.1| ribonuclease III [Enterococcus faecalis TUSoD Ef11] Length = 230 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 5/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L++R G F + +LLE+A THSS + ++ ERLEFLGD +L L++S Sbjct: 1 MDNQLTTELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ F EG+L+ ++V ++ ++ A+E ++I + S+ Sbjct: 61 QYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD + A F++ + D KT+LQE K V+ EY Sbjct: 121 DLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHEMDHKTQLQEVLQRKGDVSIEY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++ GP HD F V ++G G SK+ AEQ AA LK Sbjct: 181 RLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALK 226 >gi|99035124|ref|ZP_01314908.1| hypothetical protein Wendoof_01000254 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 234 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 126/228 (55%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56 M +L + K I Y F N ++LE+ALTH S++ ++ YERLEFLGD +L +++S Sbjct: 3 MKSLN-DAISKIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVS 61 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F KEG L+ R LV T + VA+E+ L SFI +++ R + Sbjct: 62 ATLFKLFPEEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCNGGRCNLKNLE 121 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + +E+LI A+Y+DGG+E F+ +YW++ A +D KT LQEW PEY+ Sbjct: 122 NSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQKNKLPLPEYE 181 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + ++GP H+P FT+ V I SK+ AEQ AA +L++ G Sbjct: 182 LVKQTGPAHNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEKIG 229 >gi|167854942|ref|ZP_02477717.1| GTP-binding protein LepA [Haemophilus parasuis 29755] gi|167853899|gb|EDS25138.1| GTP-binding protein LepA [Haemophilus parasuis 29755] Length = 223 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY FAN L +ALTH S + ++ ERLEFLGD IL I L+ F Sbjct: 1 MQLERLQKKLGYQFANLDYLTQALTHRSAA---SKNNERLEFLGDSILNFAIGKALYEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + VAR+ +L ++++ + K SI +D VE++I Sbjct: 58 PKADEGELSRMRAALVKEQTLAVVARQFELGEYMKLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD GI+ A V +++Q ++ G+ ++D KT LQE+ + P Y+V Sbjct: 118 AAVYLDAGIDRAMERVHCWYQQLLNDMQLGEAQKDPKTRLQEYLQGRKLPLPTYEVIDIK 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V ++ + G S+R AEQ AA +V+K GI Sbjct: 178 GEAHNQTFKVSCKVEKVDEIFIGNGTSRRKAEQDAALQVIKVLGI 222 >gi|323144165|ref|ZP_08078801.1| ribonuclease III [Succinatimonas hippei YIT 12066] gi|322416073|gb|EFY06771.1| ribonuclease III [Succinatimonas hippei YIT 12066] Length = 233 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 121/224 (54%), Gaps = 8/224 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + LE IGYAF N SLLE+ALTH S ERLEFLGD ILG++I+ L+ Sbjct: 6 NIFALHQLEITIGYAFQNLSLLEQALTHRSFG---PVHNERLEFLGDSILGMVIAKKLYA 62 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+L+ +SLV T +++ARE L + +R+ K + S+ AD VES Sbjct: 63 MFPHNPEGDLTRMRSSLVRETTLAELAREFGLGNCLRLGPGELKTGGARRDSLLADAVES 122 Query: 122 LIAALYLDGG--IEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +IAA+YLD G + V ++ R + ++D K+ LQE ++ P+YKV Sbjct: 123 VIAAMYLDSGEEFDTVRQIVLSWFHSRLKTINPKVNQKDPKSSLQELLQSQHKPLPQYKV 182 Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220 SG D+D FTV V + G+ G SKR AEQVAA +L Sbjct: 183 VNISGTDNDQVFTVEVCVEGVSEKFSGKGSSKRRAEQVAAQHLL 226 >gi|163867992|ref|YP_001609196.1| ribonuclease III [Bartonella tribocorum CIP 105476] gi|189043294|sp|A9IRN0|RNC_BART1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|161017643|emb|CAK01201.1| ribonuclease III [Bartonella tribocorum CIP 105476] Length = 235 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 117/226 (51%), Positives = 152/226 (67%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L L K G+ F + L++ALTH+S+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 1 MRRLMIDQLFKLTGHRFKDEEKLKRALTHASVQDSEQGNYERLEFLGDRVLGLLIAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +ARE+ L I+V ++R + ++ ADVVE Sbjct: 61 QLFPQASEGELSVRLNHLVNAQTCADIAREMRLPDMIQVGFEMRNFEGRRLINMHADVVE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG+E F+ KYW+ RA K RRDAKTELQEWAH + P Y+V R Sbjct: 121 ALIAVMYLDGGLESVRPFIQKYWQSRAKKMDAGRRDAKTELQEWAHIQGDAQPHYQVIKR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDP F V V ISG A G SKR AE++AA ++L+REG+W Sbjct: 181 SGPDHDPVFMVEVSISGFASEIGQGSSKRNAERMAAEKILRREGVW 226 >gi|154500966|ref|ZP_02039004.1| hypothetical protein BACCAP_04652 [Bacteroides capillosus ATCC 29799] gi|150269990|gb|EDM97509.1| hypothetical protein BACCAP_04652 [Bacteroides capillosus ATCC 29799] Length = 223 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 78/212 (36%), Positives = 120/212 (56%), Gaps = 5/212 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 LE+++GY F NR+LLE ALTHSS ++ + +S ERLEFLGD +LG++ + L+ Sbjct: 2 EKLEEKLGYTFQNRALLENALTHSSYANENKHTGAQSNERLEFLGDSVLGMVTADYLYRV 61 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+L+ +LV + +VA++L+L +++++ SI AD VE++ Sbjct: 62 HPDLPEGDLTRTRAALVCEGSLVEVAQQLELGTYLKLGKGEDAGGGRERPSIVADAVEAV 121 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +AA+YLDGGI A + ++ R + RD KT LQE + G Y++ +G Sbjct: 122 LAAVYLDGGIGSARKIIQRFILDRE-EEKSGSRDYKTALQELVQRESGQVLAYRLVGSTG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 PDH RF V VE++G G SK+ AEQ+ Sbjct: 181 PDHAKRFQVEVELNGTPVGAGEGRSKKEAEQM 212 >gi|125973448|ref|YP_001037358.1| ribonuclease III [Clostridium thermocellum ATCC 27405] gi|256005344|ref|ZP_05430309.1| ribonuclease III [Clostridium thermocellum DSM 2360] gi|281417648|ref|ZP_06248668.1| ribonuclease III [Clostridium thermocellum JW20] gi|125713673|gb|ABN52165.1| RNAse III [Clostridium thermocellum ATCC 27405] gi|255990663|gb|EEU00780.1| ribonuclease III [Clostridium thermocellum DSM 2360] gi|281409050|gb|EFB39308.1| ribonuclease III [Clostridium thermocellum JW20] gi|316940315|gb|ADU74349.1| ribonuclease III [Clostridium thermocellum DSM 1313] Length = 236 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 113/223 (50%), Gaps = 6/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + LE+ I Y F ++ L ALTHSS ++ ++ S ERLEFLGD +L +++S ++ Sbjct: 11 INELERVIDYCFEDKMKLVLALTHSSYANECRDERITSNERLEFLGDTVLNMVVSEYIYK 70 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGE++ ++V T ++ A+ L + ++ + SI +D VE+ Sbjct: 71 NCSYLAEGEMTKFRANVVCERTLAECAQNLSIGKYLLLGKGEENTGGRTRVSILSDAVEA 130 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+Y+DGG+E A TF+ ++ KS G D KT+LQE Y++ Sbjct: 131 LIGAIYIDGGLESARTFILNQLEKTIEKSIQGTIFMDYKTQLQEIIQKTNEHKIAYEIIE 190 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH F V++ G +K+ AEQ+AA L+ Sbjct: 191 EKGPDHSKVFVAQVKVDEKVVGVGEGRTKKEAEQMAAKSSLEN 233 >gi|327463120|gb|EGF09441.1| ribonuclease III [Streptococcus sanguinis SK1] gi|327474731|gb|EGF20136.1| ribonuclease III [Streptococcus sanguinis SK408] gi|327490288|gb|EGF22076.1| ribonuclease III [Streptococcus sanguinis SK1058] gi|332362454|gb|EGJ40254.1| ribonuclease III [Streptococcus sanguinis SK1056] Length = 232 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + LE+ F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENLKKALLEQ-FDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E +F+ + + +++G F R D KT+LQE V Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIA 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V +GP H F V V I+G QG SK+ AEQ AA ++E Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227 >gi|319649604|ref|ZP_08003760.1| rnc protein [Bacillus sp. 2_A_57_CT2] gi|317398766|gb|EFV79448.1| rnc protein [Bacillus sp. 2_A_57_CT2] Length = 246 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 107/223 (47%), Gaps = 7/223 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ + IG F N LL++A THSS + ++ E ERLEFLGD +L L +S L+ Sbjct: 18 QFKEFQTEIGIQFENEKLLKQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTVSKFLY 77 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EGEL+ ++V + A L S + + ++ ADV E Sbjct: 78 LKYPMMSEGELTKLRAAVVCEPSLVSFAHALSFGSLVLLGKGEEMTGGRTRPALLADVFE 137 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 + I ALYLD G++ F++K + + SG F D K++LQE T EYK+ Sbjct: 138 AFIGALYLDKGLDTVVGFLEKVVFPK-IDSGAFSHVMDFKSQLQELVQRDGAGTIEYKIL 196 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H+ F V ++G G SK+ AEQ AA L+ Sbjct: 197 QEKGPAHNREFVSTVSLNGRELGTGTGRSKKEAEQHAAQMALE 239 >gi|331266250|ref|YP_004325880.1| ribonuclease III [Streptococcus oralis Uo5] gi|326682922|emb|CBZ00539.1| ribonuclease III [Streptococcus oralis Uo5] Length = 232 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+KR FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + +D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +VT +GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 180 QVTSETGPAHDKVFDVEVLVEGRSIGKGQGRSKKLAEQEAAKNAVEK 226 >gi|305674324|ref|YP_003865996.1| ribonuclease III [Bacillus subtilis subsp. spizizenii str. W23] gi|305412568|gb|ADM37687.1| ribonuclease III [Bacillus subtilis subsp. spizizenii str. W23] Length = 249 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 108/225 (48%), Gaps = 5/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS L Sbjct: 18 EQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F + + EG+L+ ++V + +A EL + + ++ ADV Sbjct: 78 FAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVF 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+ I ALYLD G+E +F+ Y + D K++LQE+ + EYK+T Sbjct: 138 EAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFKSQLQEYVQRDGKGSLEYKIT 197 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F +V + G G SK+ AEQ AA E L + Sbjct: 198 NEKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAKL 242 >gi|42521037|ref|NP_966952.1| ribonuclease III, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225630900|ref|YP_002727691.1| ribonuclease III, putative [Wolbachia sp. wRi] gi|225677311|ref|ZP_03788288.1| ribonuclease III, putative [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|81652137|sp|Q73FT3|RNC_WOLPM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807910|sp|C0R4Q8|RNC_WOLWR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|42410778|gb|AAS14886.1| ribonuclease III, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225590638|gb|EEH11888.1| ribonuclease III, putative [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225592881|gb|ACN95900.1| ribonuclease III, putative [Wolbachia sp. wRi] Length = 232 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 126/228 (55%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56 M +L + K I Y F N ++LE+ALTH S++ ++ YERLEFLGD +L +++S Sbjct: 1 MKSLN-DAISKIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F KEG L+ R LV T + VA+E+ L SFI +++ R + Sbjct: 60 ATLFKLFPEEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCNGGRCNLKNLE 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + +E+LI A+Y+DGG+E F+ +YW++ A +D KT LQEW PEY+ Sbjct: 120 NSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQKNKLPLPEYE 179 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + ++GP H+P FT+ V I SK+ AEQ AA +L++ G Sbjct: 180 LVKQTGPAHNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEKIG 227 >gi|219870402|ref|YP_002474777.1| ribonuclease III [Haemophilus parasuis SH0165] gi|254807496|sp|B8F3C7|RNC_HAEPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|219690606|gb|ACL31829.1| ribonuclease III/dsRNA-specific ribonuclease [Haemophilus parasuis SH0165] Length = 223 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY FAN L +ALTH S + ++ ERLEFLGD IL I L+ F Sbjct: 1 MQLERLQKKLGYQFANLDYLTQALTHRSAA---SKNNERLEFLGDSILNFAIGKALYEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + VAR+ +L ++++ + K SI +D VE++I Sbjct: 58 PKANEGELSRMRAALVKEQTLAVVARQFELGEYMKLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD GI+ A V +++Q ++ G+ ++D KT LQE+ + P Y+V Sbjct: 118 AAVYLDAGIDRAMERVHCWYQQLLNDMQLGEAQKDPKTRLQEYLQGRKLPLPTYEVIDIK 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V ++ + G S+R AEQ AA +V+K GI Sbjct: 178 GEAHNQTFKVSCKVEKVDEIFIGNGTSRRKAEQDAALQVIKVLGI 222 >gi|301168615|emb|CBW28205.1| RNase III [Haemophilus influenzae 10810] Length = 227 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 122/231 (52%), Gaps = 11/231 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L LE++IGY F + +LL++ALTH S + + ERLEFLGD IL I+ L+ Sbjct: 1 MNHLD--RLERKIGYCFNDITLLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ +L ++ + S K+ SI AD VE Sbjct: 56 HQFPRCNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD G+ V + +++Q +K G ++DAKT LQE+ K P Y+V Sbjct: 116 AIIGAMSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVV 175 Query: 179 FRSGPDHDPRFTVVVEIS--GL--APAQGMDCSKRAAEQVAAAEVLKREGI 225 G H FTV ++ G S+R AEQ AA ++LK I Sbjct: 176 NIQGEAHCQIFTVECKVKSAGKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226 >gi|319407031|emb|CBI80668.1| ribonuclease III [Bartonella sp. 1-1C] Length = 227 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 112/226 (49%), Positives = 146/226 (64%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LEK G++F + L++ALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 1 MEHQIIDQLEKLTGHSFKDADRLKRALTHSSVQSSEQGNYERLEFLGDRVLGLLIAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +A E+ L + V +++ + +I ADV+E Sbjct: 61 QIFPQASEGELSVRLNGLVNAQTCADIALEMGLPDMVHVGCEMKNLEGRRLVNIYADVIE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG+E + +YW RA K RRD+KTELQEWAH + P Y+V R Sbjct: 121 ALIAVIYLDGGLESVRPVIQRYWHDRAKKMNAGRRDSKTELQEWAHTQDSAQPHYQVVQR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDHDP F V V I G AP G SKR AE+ AA +L+REGIW Sbjct: 181 YGPDHDPVFMVEVSICGYAPEIGRGSSKRQAERDAAERILRREGIW 226 >gi|332981630|ref|YP_004463071.1| ribonuclease III [Mahella australiensis 50-1 BON] gi|332699308|gb|AEE96249.1| ribonuclease III [Mahella australiensis 50-1 BON] Length = 228 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 113/224 (50%), Gaps = 4/224 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFN 61 R L +GY F + + L++ALTHSS ++ + Y ERLE LGD +L ++I+ LF Sbjct: 2 ERLKELMDLLGYRFNDINKLDEALTHSSYAYEHGLDYYNERLELLGDSVLNIIITDYLFV 61 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG LS +++VS + +VA ++L S++ +S + S AD VE+ Sbjct: 62 TYPELSEGNLSKLRSNIVSEKPLYKVAAAMNLGSYLLLSRGEKLSHGDMRPSTLADTVEA 121 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTF 179 +I A+YLDGG + A FV ++ D K+ELQE +Y++ Sbjct: 122 IIGAVYLDGGFDAAKVFVLSLLAPIIEETAAISNFNDYKSELQERLQIDGYSDIKYEIIR 181 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V++ G +G SK+ AEQ AA + L Sbjct: 182 EEGPDHDKMFFAEVKVDGKPVGRGSGRSKKDAEQKAAQQALSEL 225 >gi|52785573|ref|YP_091402.1| ribonuclease III [Bacillus licheniformis ATCC 14580] gi|163119429|ref|YP_078987.2| ribonuclease III [Bacillus licheniformis ATCC 14580] gi|319646025|ref|ZP_08000255.1| ribonuclease 3 [Bacillus sp. BT1B_CT2] gi|81385589|sp|Q65JQ5|RNC_BACLD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|52348075|gb|AAU40709.1| Rnc [Bacillus licheniformis ATCC 14580] gi|145902936|gb|AAU23349.2| ribonuclease III [Bacillus licheniformis ATCC 14580] gi|317391775|gb|EFV72572.1| ribonuclease 3 [Bacillus sp. BT1B_CT2] Length = 249 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 106/227 (46%), Gaps = 5/227 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57 A ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS Sbjct: 16 KAEQFKKFQERISVQFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQ 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ + + EG+L+ ++V + +A EL + + ++ AD Sbjct: 76 FLYAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGELVLLGKGEEMTGGRKRPALLAD 135 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176 V E+ I ALYLD G+E TF+ Y + D K++LQE+ EYK Sbjct: 136 VFEAFIGALYLDQGLEAVVTFLKAYVFPKIDDGAFSHVMDFKSQLQEFVQRDGRGILEYK 195 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GP H+ F V + G G SK+ AEQ AA E L + Sbjct: 196 ILQEKGPAHNREFEANVSLKGEVLGVGSGRSKKEAEQHAAQEALAKL 242 >gi|319404018|emb|CBI77606.1| ribonuclease III [Bartonella rochalimae ATCC BAA-1498] Length = 227 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 113/226 (50%), Positives = 146/226 (64%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LEK G++F + L++ALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 1 MEHQIIDQLEKLTGHSFKDADRLKRALTHSSVQSSEQGNYERLEFLGDRVLGLLIAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +A E+ L + V +++ + +I ADV+E Sbjct: 61 QIFPQASEGELSVRLNGLVNAQTCADIALEMGLPDMVHVGCEMKNLEGRRLVNIYADVIE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG+E + +YW RA K RRDAKTELQEWAH + P Y+V R Sbjct: 121 ALIAVIYLDGGLESVRPVIQRYWHDRAQKMNAGRRDAKTELQEWAHTQDSAQPYYQVVQR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDHDP F V V I G AP G SKR AE+ AA +L+REGIW Sbjct: 181 YGPDHDPVFMVEVSICGYAPEIGRGSSKRQAERDAAERILRREGIW 226 >gi|165975962|ref|YP_001651555.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|238687533|sp|B0BUA6|RNC_ACTPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|165876063|gb|ABY69111.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 223 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY F N L +ALTH S ++ ERLEFLGD IL I LF F Sbjct: 1 MQLERLQKKLGYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ L ++++ + K SI +D VE++I Sbjct: 58 PKANEGELSRMRATLVREQTLAILARKFGLGEYMKLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 118 AAIYLDAGMDKAIAQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLNIK 177 Query: 182 GPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 178 GEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 220 >gi|68248565|ref|YP_247677.1| ribonuclease III [Haemophilus influenzae 86-028NP] gi|145629132|ref|ZP_01784931.1| ribonuclease III [Haemophilus influenzae 22.1-21] gi|145633429|ref|ZP_01789159.1| ribonuclease III [Haemophilus influenzae 3655] gi|145636782|ref|ZP_01792448.1| ribonuclease III [Haemophilus influenzae PittHH] gi|145639697|ref|ZP_01795300.1| ribonuclease III [Haemophilus influenzae PittII] gi|148825705|ref|YP_001290458.1| ribonuclease III [Haemophilus influenzae PittEE] gi|229846933|ref|ZP_04467039.1| ribonuclease III [Haemophilus influenzae 7P49H1] gi|260582072|ref|ZP_05849867.1| ribonuclease III [Haemophilus influenzae NT127] gi|81337008|sp|Q4QPN0|RNC_HAEI8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043319|sp|A5UBC4|RNC_HAEIE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|68056764|gb|AAX87017.1| ribonuclease III [Haemophilus influenzae 86-028NP] gi|144978635|gb|EDJ88358.1| ribonuclease III [Haemophilus influenzae 22.1-21] gi|144985992|gb|EDJ92594.1| ribonuclease III [Haemophilus influenzae 3655] gi|145270080|gb|EDK10017.1| ribonuclease III [Haemophilus influenzae PittHH] gi|145271254|gb|EDK11168.1| ribonuclease III [Haemophilus influenzae PittII] gi|148715865|gb|ABQ98075.1| ribonuclease III [Haemophilus influenzae PittEE] gi|229810017|gb|EEP45737.1| ribonuclease III [Haemophilus influenzae 7P49H1] gi|260094962|gb|EEW78855.1| ribonuclease III [Haemophilus influenzae NT127] gi|309750667|gb|ADO80651.1| RNase III, dsRNA [Haemophilus influenzae R2866] Length = 227 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 119/226 (52%), Gaps = 9/226 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE++IGY F + +LL++ALTH S + + ERLEFLGD IL I+ L++ F Sbjct: 4 LDRLERKIGYCFNDIALLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALYHQFPR 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS +LV T + +AR+ +L ++ + S K+ SI AD VE++I A Sbjct: 61 CNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGA 120 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + LD G+ V + +++Q +K G ++DAKT LQE+ K P Y+V G Sbjct: 121 MSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGE 180 Query: 184 DHDPRFTVVVEIS--GL--APAQGMDCSKRAAEQVAAAEVLKREGI 225 H FTV ++ G S+R AEQ AA ++LK I Sbjct: 181 AHCQIFTVECKVKSAGKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226 >gi|89098685|ref|ZP_01171567.1| Rnc [Bacillus sp. NRRL B-14911] gi|89086647|gb|EAR65766.1| Rnc [Bacillus sp. NRRL B-14911] Length = 259 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 111/226 (49%), Gaps = 7/226 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57 + +++ +K+IG +F N LL++A THSS + ++ E ERLEFLGD +L L +S Sbjct: 16 AEMQFREFQKKIGISFENEKLLKQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTVSQ 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ + EGEL+ ++V + A EL+ + + ++ AD Sbjct: 76 FLYKKYPMMSEGELTKLRAAVVCEPSLVTFANELEFGKLVLLGKGEEMTGGRERPALLAD 135 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEY 175 V E+ I ALYL+ GI+ F+++ + + SG F D K++LQE EY Sbjct: 136 VFEAFIGALYLEKGIDTVIGFLEQTVFPK-INSGAFSHVMDFKSQLQELVQRDGAGAIEY 194 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K+ GP H F V +SG G SK+ AEQ AA L+ Sbjct: 195 KILQEKGPAHSREFVSRVSLSGNELGTGTGRSKKEAEQHAAQMALE 240 >gi|148827174|ref|YP_001291927.1| ribonuclease III [Haemophilus influenzae PittGG] gi|189043320|sp|A5UFI8|RNC_HAEIG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|148718416|gb|ABQ99543.1| ribonuclease III [Haemophilus influenzae PittGG] Length = 227 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 119/226 (52%), Gaps = 9/226 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE++IGY F + +LL++ALTH S + + ERLEFLGD IL I+ L++ F Sbjct: 4 LDRLERKIGYRFNDIALLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALYHQFPR 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS +LV T + +AR+ +L ++ + S K+ SI AD VE++I A Sbjct: 61 CNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGA 120 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + LD G+ V + +++Q +K G ++DAKT LQE+ K P Y+V G Sbjct: 121 MSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGE 180 Query: 184 DHDPRFTVVVEIS--GL--APAQGMDCSKRAAEQVAAAEVLKREGI 225 H FTV ++ G S+R AEQ AA ++LK I Sbjct: 181 AHCQIFTVECKVKSAGKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226 >gi|332141899|ref|YP_004427637.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype'] gi|327551921|gb|AEA98639.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype'] Length = 228 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 6/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +Y L K IGY F N +LLE+ALTH S + + ERLEFLGD ILG++I LF F Sbjct: 6 KYLRLYKAIGYTFNNEALLEQALTHRSAAKQH---NERLEFLGDAILGMIIGETLFKRFP 62 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+L+ ++LV +T +++A+E + + + K +SI AD VE+++ Sbjct: 63 TVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAVEAILG 122 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G++ +D+ W+ R L +D+KT LQE+ + P Y+V SG Sbjct: 123 AIYLDSGMDEVRGVIDRLWESRINQLDPNAHPKDSKTRLQEFLQGRKQALPTYEVLSISG 182 Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223 DH F V ++ L A S+R AEQ AA L++ Sbjct: 183 KDHAQTFEVCCKVESLPDAVVAPGNSRRKAEQEAARLTLEKL 224 >gi|319408283|emb|CBI81936.1| ribonuclease III [Bartonella schoenbuchensis R1] Length = 236 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 111/226 (49%), Positives = 152/226 (67%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LEK G+ F N + L++ALTHSS+ + +YERLEFLGDR+LGLL++ +L+ Sbjct: 2 MKRHIIDQLEKLTGHRFKNENRLKRALTHSSVQGLAEGNYERLEFLGDRVLGLLVAEMLY 61 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+ +TC+++A E+ L I V +++ + ++ ADV+E Sbjct: 62 QFFPHASEGELSVRLNGLVNTQTCAEIALEMGLPDMIHVGFEMKNLENRRVANMYADVIE 121 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDG +E +F+ KYW+ RA K RRDAKTELQEWAH + G P+Y+V R Sbjct: 122 ALIAVMYLDGDLECVRSFIRKYWQDRARKMDAGRRDAKTELQEWAHTQDGAQPQYRVVKR 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDHDP F V V++ G AP G SKR AE+VAA ++L+REG+W Sbjct: 182 YGPDHDPIFMVEVKVFGFAPEIGQGSSKRHAERVAAEKILRREGVW 227 >gi|182417248|ref|ZP_02948601.1| ribonuclease III [Clostridium butyricum 5521] gi|237669155|ref|ZP_04529139.1| ribonuclease III [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378894|gb|EDT76407.1| ribonuclease III [Clostridium butyricum 5521] gi|237657503|gb|EEP55059.1| ribonuclease III [Clostridium butyricum E4 str. BoNT E BL5262] Length = 232 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 4/227 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M+ +E+ +G F N +LL+ ALTHSS ++ ++ E ERLEFLGD +L L I+ Sbjct: 1 MNKYTLKEIEENLGVCFNNPTLLKTALTHSSFANQFKDAEYNERLEFLGDAVLQLCITEY 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LFN+F S EGEL+ + +V + ++A++L L +IR+S SIQAD Sbjct: 61 LFNNFKSKSEGELTKTRSLIVCENSLYEIAKKLHLGEYIRMSKGEELTGGRERISIQADA 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYK 176 VE++IAA+YLD GI F+ ++++ K+ + D KT+LQE+ V+ Y+ Sbjct: 121 VEAVIAAVYLDKGIGFVRDFILLHFEEIIKKAINNEIILDFKTKLQEFLQKDGEVSIHYE 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GP H +F V I +G SK+ AEQ AA + L + Sbjct: 181 LIKHEGPPHRRKFFTNVVIENNIMGEGCGYSKKEAEQNAAKQALMKL 227 >gi|127511987|ref|YP_001093184.1| ribonuclease III [Shewanella loihica PV-4] gi|189043350|sp|A3QBS7|RNC_SHELP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|126637282|gb|ABO22925.1| RNAse III [Shewanella loihica PV-4] Length = 225 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 123/225 (54%), Gaps = 6/225 (2%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M ++ L + +GY F +LLE+ALTH S + + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNLPRLGRILGYQFQQIALLEQALTHRSAASKH---NERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV + +++A+E L ++++ K SI AD + Sbjct: 58 YHQFPKATEGDLSRMRATLVCGKMLAEIAKEFKLGDYLKLGPGELKSGGFRRESILADAM 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLD IE T V ++K R A+ ++D KT LQE P Y V Sbjct: 118 EAIIGAIYLDADIETCRTLVLNWYKSRLAVIEPVNQKDPKTLLQEHLQGFKQPLPVYTVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 SG H FTV ++ L A G+ S+R AEQ+AAAEVL+R Sbjct: 178 NISGEAHAQTFTVECKVEQLKEAVIGVANSRRKAEQIAAAEVLER 222 >gi|325696125|gb|EGD38016.1| ribonuclease III [Streptococcus sanguinis SK160] Length = 232 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + LE+ FA+ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENLKKALLEQ-FDLVFADETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E +F+ + + +++G F R D KT+LQE V Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIA 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V +GP H F V V I+G QG SK+ AEQ AA ++E Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227 >gi|332992353|gb|AEF02408.1| ribonuclease III [Alteromonas sp. SN2] Length = 229 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 81/220 (36%), Positives = 117/220 (53%), Gaps = 6/220 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +Y L K +GY F N +LLE+ALTH S + + ERLEFLGD ILG++I LF F Sbjct: 6 KYIRLSKALGYTFNNVALLEQALTHRSAAKQH---NERLEFLGDAILGMVIGETLFKRFP 62 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ ++LV +T +++ARE + + + K +SI AD VE+++ Sbjct: 63 DVPEGKLTRMRSTLVKGDTLAELAREASMGELLHLGPGELKSGGHRRSSILADAVEAVLG 122 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G+E + W+ R AL +D+KT LQE+ + P Y+V SG Sbjct: 123 AIYLDSGMEEVCNVIYHLWESRIEALNPNAHPKDSKTRLQEYLQGRKLPLPSYEVISISG 182 Query: 183 PDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 DH F V ++ L P S+R AEQ AA L+ Sbjct: 183 KDHAQVFEVSCTVTTLDKPVSASGNSRRKAEQEAARLTLE 222 >gi|315303706|ref|ZP_07874220.1| ribonuclease III [Listeria ivanovii FSL F6-596] gi|313627919|gb|EFR96538.1| ribonuclease III [Listeria ivanovii FSL F6-596] Length = 229 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFYFEDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179 S I ALYLD GI TF+++ + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIAKVVTFLERIIFPKIDAGAYLETVDYKTQLQEIVQRDRDVLIEYDILG 182 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP H+ F V ++G +G +K+ AEQ AA + + Sbjct: 183 ETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226 >gi|311029996|ref|ZP_07708086.1| ribonuclease III [Bacillus sp. m3-13] Length = 247 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 5/227 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57 + + L++++G F N LL +A THSS + ++ E ERLEFLGD +L L IS Sbjct: 16 TKKNFVMLQEKLGVKFHNEKLLYQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTISQ 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ + EG+L+ S+V + A +L ++ + ++ AD Sbjct: 76 FLYKKYPMMSEGQLTKLRASIVCEPSLVSFANDLSFGQYVLLGKGEEITGGRARPALLAD 135 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176 V E+ I ALYLD G+E F++KY + + D K++LQE EY+ Sbjct: 136 VFEAFIGALYLDLGLETVFQFLEKYVYPKINEGAFSHVMDFKSQLQEMIQRNALGVIEYE 195 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V GP H+ F V ++ G+ SK+ AEQ AA L++ Sbjct: 196 VLEEKGPAHNREFVSKVSLNKEEMGIGVGRSKKEAEQHAAQFALQKL 242 >gi|126173439|ref|YP_001049588.1| ribonuclease III [Shewanella baltica OS155] gi|160874397|ref|YP_001553713.1| ribonuclease III [Shewanella baltica OS195] gi|217974269|ref|YP_002359020.1| ribonuclease III [Shewanella baltica OS223] gi|304409362|ref|ZP_07390982.1| ribonuclease III [Shewanella baltica OS183] gi|307303720|ref|ZP_07583473.1| ribonuclease III [Shewanella baltica BA175] gi|189043346|sp|A3D1V6|RNC_SHEB5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043348|sp|A9L5N6|RNC_SHEB9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807898|sp|B8EBQ2|RNC_SHEB2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|125996644|gb|ABN60719.1| RNAse III [Shewanella baltica OS155] gi|160859919|gb|ABX48453.1| Ribonuclease III [Shewanella baltica OS195] gi|217499404|gb|ACK47597.1| Ribonuclease III [Shewanella baltica OS223] gi|304351880|gb|EFM16278.1| ribonuclease III [Shewanella baltica OS183] gi|306912618|gb|EFN43041.1| ribonuclease III [Shewanella baltica BA175] gi|315266632|gb|ADT93485.1| ribonuclease III [Shewanella baltica OS678] Length = 226 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 125/225 (55%), Gaps = 7/225 (3%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M ++ L + + Y F N LL +ALTH S ++ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNLPRLCRTLSYEFKNIELLTQALTHRSAANKH---NERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV +T + +A+E L ++ + K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVRGDTLTIIAQEFKLGDYLYLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD +EV + K++ +R ++ G ++DAKT LQE P+Y+V Sbjct: 118 EAIIGAVYLDSDLEVCRALLLKWYAERLAEIQPGISQKDAKTLLQEHLQGFKKPLPDYQV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 G HD FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 178 INIEGDAHDQTFTVECRIEDLSQSVIGVASSRRKAEQIAAAQVLE 222 >gi|322375351|ref|ZP_08049864.1| ribonuclease III [Streptococcus sp. C300] gi|321279614|gb|EFX56654.1| ribonuclease III [Streptococcus sp. C300] Length = 232 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 111/227 (48%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+KR FA++ LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKKRFAIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPRKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + +D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +VT +GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 180 QVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226 >gi|322385039|ref|ZP_08058689.1| ribonuclease III [Streptococcus cristatus ATCC 51100] gi|321270949|gb|EFX53859.1| ribonuclease III [Streptococcus cristatus ATCC 51100] Length = 229 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + LE+ G F + SLLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MEQLKDALLEQ-FGLVFEDSSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD +E F+ + + +++G F + D KT+LQE V Sbjct: 120 DLFEAFLGALLLDKDVETVKAFIYQVMIPK-VEAGDFEQVTDYKTKLQELLQVNGDVEIV 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+VT +GP H F V V I+G QG SK+ AEQ AA + ++E Sbjct: 179 YQVTDETGPAHAKNFAVAVLINGQKAGQGQGRSKKLAEQEAAKDAFEKE 227 >gi|294500965|ref|YP_003564665.1| ribonuclease III [Bacillus megaterium QM B1551] gi|294350902|gb|ADE71231.1| ribonuclease III [Bacillus megaterium QM B1551] Length = 248 Score = 261 bits (667), Expect = 7e-68, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 106/225 (47%), Gaps = 5/225 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 ++ +K IG F N +LL +A THSS + ++ E ERLEFLGD +L L +S Sbjct: 17 KQNFAEFQKEIGIQFTNEALLFQAFTHSSYVNEHRRRPYEDNERLEFLGDAVLELTVSQF 76 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + + EGEL+ ++V + A E+D + + ++ ADV Sbjct: 77 LFKKYPTMSEGELTKLRAAVVCEPSLVTFANEMDFGKLVLLGKGEEMTGGRSRPALLADV 136 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ I ALYLD G++ T + K + + D K++LQE EYKV Sbjct: 137 FEAFIGALYLDQGLDTVVTILKKVVFPKINEGAFSHVMDFKSQLQEVIQRDGVGQLEYKV 196 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++G G+ SK+ AEQ AA + + Sbjct: 197 LQEKGPAHNREFLSRVSLNGEELGVGVGRSKKEAEQKAAQVAITK 241 >gi|90424139|ref|YP_532509.1| ribonuclease III [Rhodopseudomonas palustris BisB18] gi|90106153|gb|ABD88190.1| RNAse III [Rhodopseudomonas palustris BisB18] Length = 272 Score = 261 bits (667), Expect = 7e-68, Method: Composition-based stats. Identities = 102/217 (47%), Positives = 140/217 (64%), Gaps = 3/217 (1%) Query: 12 RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 RIG+AFA+ +LL A TH S + + +SY+RLEFLGD +LGL++S +L+ F +A E Sbjct: 49 RIGHAFADPALLATAFTHVSALKSARNRADSYQRLEFLGDHVLGLVVSDMLYRAFPNADE 108 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS R LV E C+ VAR LDL I++ + S+ D+ E++I A++L Sbjct: 109 GELSKRLADLVRKEACADVARSLDLLDGIKLGTVGAGAGARLRKSVLGDICEAVIGAIFL 168 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG A +FV + W +R K + RDAKT LQEWA K TP Y+ R+GP HDP+ Sbjct: 169 DGGYPAAESFVQRNWLERMRKPVRPLRDAKTILQEWAQGKGLPTPVYREVERTGPHHDPQ 228 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 F V V++ GLAPA+G+ SKRAAE+VAA+ +L REG+ Sbjct: 229 FRVAVDLPGLAPAEGIGGSKRAAEKVAASVMLAREGV 265 >gi|323489554|ref|ZP_08094781.1| ribonuclease 3 [Planococcus donghaensis MPA1U2] gi|323396685|gb|EGA89504.1| ribonuclease 3 [Planococcus donghaensis MPA1U2] Length = 251 Score = 261 bits (667), Expect = 7e-68, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 103/223 (46%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + L+K + F +LL +A THSS + ++ ERLEFLGD +L L +S L+ Sbjct: 23 FEQLQKELNITFKKPTLLYQAFTHSSYVNEHRRKQFTDNERLEFLGDAVLELSVSHYLYM 82 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGEL+ ++V + A EL +I + ++ ADV ES Sbjct: 83 KYPEMSEGELTKLRAAIVCEPSLVLFANELGFGKYILLGKGEELTGGRTRPALLADVFES 142 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E +F++ + + + D K++LQE K T Y++ Sbjct: 143 YIGALYLDQGLEPVVSFLEMVLFPKVDIGAFSHVMDYKSQLQELVQQKNTGTLSYEIIDE 202 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H F V ++ G SK+ AEQ AA +++ Sbjct: 203 IGPAHSRVFVTRVSLADRELGVGNGRSKKEAEQQAAQLAIRKL 245 >gi|291288904|ref|YP_003505720.1| ribonuclease III [Denitrovibrio acetiphilus DSM 12809] gi|290886064|gb|ADD69764.1| ribonuclease III [Denitrovibrio acetiphilus DSM 12809] Length = 235 Score = 261 bits (667), Expect = 7e-68, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 130/227 (57%), Gaps = 4/227 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLL 59 S++ +LE R+GY F+++S++ +ALTH S +H +++YERLEFLGD +L L+++ L Sbjct: 6 SSVDIDSLEGRLGYHFSDKSIVLEALTHRSYAHEKKNKQNYERLEFLGDAVLQLIVTEYL 65 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EG LS VS S++A EL L I + + + S+ D+ Sbjct: 66 LDRYKDYDEGLLSKLRGYFVSEGFLSRIAIELKLGEHILLGKGEKASGGKYKESLLCDIF 125 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ES++AA+YLDGG A + +++ R + S DAK+ELQ+ + KFG P+Y V Sbjct: 126 ESVVAAIYLDGGYGFARDIIIRHFGSRIDEDISNSSFVDAKSELQKISQRKFGTLPDYTV 185 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP+HD F V V++ L QG+ +K++AE+ AA L++ G Sbjct: 186 LDEKGPEHDKIFVVRVDVETLVSEQGIGKTKKSAEKDAAKNALRKLG 232 >gi|323484230|ref|ZP_08089599.1| hypothetical protein HMPREF9474_01350 [Clostridium symbiosum WAL-14163] gi|323692112|ref|ZP_08106358.1| ribonuclease III [Clostridium symbiosum WAL-14673] gi|323402472|gb|EGA94801.1| hypothetical protein HMPREF9474_01350 [Clostridium symbiosum WAL-14163] gi|323503835|gb|EGB19651.1| ribonuclease III [Clostridium symbiosum WAL-14673] Length = 228 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 75/218 (34%), Positives = 113/218 (51%), Gaps = 5/218 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + LE++ GY F NR LL +A+THSS ++ E ERLEFLGD +L ++ S LF Sbjct: 4 KLMELEEKTGYHFNNRELLGRAMTHSSYANECHKSKLECNERLEFLGDAVLEIVSSDFLF 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG+L+ S+V T + A EL L ++ + S+ +D +E Sbjct: 64 HKFPDMPEGDLTKTRASMVCEPTLAYCAEELSLGKYLLLGKGEEATGGRNRNSVVSDAME 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI A+YLDGG A F+ K+ ++ K D+KT LQE ++ Y++ Sbjct: 124 ALIGAIYLDGGFASAKEFIHKFIL-NDMEHKKLFYDSKTILQEIVQSRCEEGLSYQLLRE 182 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 GPDH+ F V +I +G +K+AAEQ+AA Sbjct: 183 EGPDHNKMFEVAAKIGEKEIGRGTGRTKKAAEQLAAYR 220 >gi|169342696|ref|ZP_02863737.1| ribonuclease III [Clostridium perfringens C str. JGS1495] gi|169299202|gb|EDS81272.1| ribonuclease III [Clostridium perfringens C str. JGS1495] Length = 237 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 122/228 (53%), Gaps = 4/228 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M + +EK IG F N+ +L ALTHSS ++ ++ + ERLEFLGD +L L ++ Sbjct: 1 MKDINLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKY 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LFN++ EGEL+ +V + +V++ L L +IR+S TSIQAD Sbjct: 61 LFNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADA 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYK 176 +E++IAA+YLD GIEVA F+ + +K K+ + D KT LQE V Y Sbjct: 121 LEAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYN 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + GP H +F + I+ QG+ SK+ +EQ AA L+R G Sbjct: 181 LVKHEGPPHRRKFFTDLLINNEVMGQGVGFSKKESEQNAAKAALQRLG 228 >gi|291165574|gb|EFE27623.1| ribonuclease III [Filifactor alocis ATCC 35896] Length = 229 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLF 60 +K+IGY F + LL +ALTH+S + + ERLEFLGD ILG+++ST LF Sbjct: 3 ELKEFQKKIGYTFQDEKLLREALTHTSYINENRNKNLRPNERLEFLGDSILGVVVSTYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EGELS S+V ++ VA+ LD S+I + SI AD+VE Sbjct: 63 EKRKDLPEGELSKIRASIVCEDSLQLVAKRLDAGSYIYMGKGEEMTGGRTRHSILADMVE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LIAA+YLDGG++ A F+ + + ++ G +D KT LQE K + EY+V Sbjct: 123 ALIAAIYLDGGMKAASKFIFLFMEDVMKRATKGDMDKDYKTRLQEIVQQKPDRSIEYRVI 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDH F V + + A G SK+ AE+ AA + L+ Sbjct: 183 GEKGPDHRKIFVVELLVDKKQVAVGEGYSKKEAEKQAAKKALQ 225 >gi|291522183|emb|CBK80476.1| RNAse III [Coprococcus catus GD/7] Length = 233 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 116/219 (52%), Gaps = 5/219 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 L+++I Y F + +LL ALTHSS ++ ++ ERLEFLGD +L ++ S LF Sbjct: 7 LKELQQKIDYQFKDENLLFTALTHSSYANEHKLHKIHHNERLEFLGDAVLEVVSSDFLFK 66 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +F EG++S + SLV T + AR++ L ++ + SI +D +E+ Sbjct: 67 NFPDMAEGQMSKKRASLVCEPTLAYCARQIGLGKYLMLGKGEDMGGGRNRDSILSDALEA 126 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +I ++YLDGGIE AG+F+ + ++ +D+KT LQE Y+V + Sbjct: 127 VIGSIYLDGGIEQAGSFIMTHVL-NDIEHKAMFQDSKTILQELLQKDHKDPITYEVVDMT 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP+H+ F + V++ +G +K+AA Q AA + Sbjct: 186 GPEHNRMFVMQVKLGDRVIGKGSGRTKQAAGQEAAYHAI 224 >gi|167549387|ref|ZP_02343146.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992712|ref|ZP_02573808.1| ribonuclease III [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232159|ref|ZP_02657217.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238326|ref|ZP_02663384.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168245106|ref|ZP_02670038.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261368|ref|ZP_02683341.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466658|ref|ZP_02700512.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821429|ref|ZP_02833429.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443007|ref|YP_002041844.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450415|ref|YP_002046643.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472117|ref|ZP_03078101.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194733998|ref|YP_002115644.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247832|ref|YP_002147539.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262390|ref|ZP_03162464.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198245284|ref|YP_002216648.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387478|ref|ZP_03214090.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929592|ref|ZP_03220666.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213425276|ref|ZP_03358026.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213585348|ref|ZP_03367174.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213613049|ref|ZP_03370875.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646353|ref|ZP_03376406.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213859103|ref|ZP_03385074.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238912699|ref|ZP_04656536.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825501|ref|ZP_06544708.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|194401670|gb|ACF61892.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408719|gb|ACF68938.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458481|gb|EDX47320.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709500|gb|ACF88721.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630694|gb|EDX49286.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211535|gb|ACH48932.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240645|gb|EDY23265.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288832|gb|EDY28205.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939800|gb|ACH77133.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604576|gb|EDZ03121.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321311|gb|EDZ06511.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205325334|gb|EDZ13173.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329152|gb|EDZ15916.1| ribonuclease III [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333647|gb|EDZ20411.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336135|gb|EDZ22899.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341915|gb|EDZ28679.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349444|gb|EDZ36075.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|312913570|dbj|BAJ37544.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087082|emb|CBY96851.1| RNase III, ds RNA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222714|gb|EFX47785.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613351|gb|EFY10293.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620445|gb|EFY17310.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625087|gb|EFY21916.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629469|gb|EFY26245.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633856|gb|EFY30595.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635462|gb|EFY32173.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639862|gb|EFY36541.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644252|gb|EFY40796.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649944|gb|EFY46364.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654873|gb|EFY51190.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658199|gb|EFY54465.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661729|gb|EFY57947.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669710|gb|EFY65856.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673283|gb|EFY69388.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674928|gb|EFY71015.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682951|gb|EFY78969.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685612|gb|EFY81607.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323130912|gb|ADX18342.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323191960|gb|EFZ77198.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200407|gb|EFZ85488.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201307|gb|EFZ86374.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208377|gb|EFZ93317.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211547|gb|EFZ96385.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215979|gb|EGA00711.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221760|gb|EGA06168.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225632|gb|EGA09859.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229350|gb|EGA13474.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235335|gb|EGA19419.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237479|gb|EGA21542.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245234|gb|EGA29235.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248808|gb|EGA32735.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254012|gb|EGA37833.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259060|gb|EGA42708.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261983|gb|EGA45548.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267766|gb|EGA51247.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269675|gb|EGA53127.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624403|gb|EGE30748.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628781|gb|EGE35124.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 245 Score = 260 bits (666), Expect = 9e-68, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 114/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 20 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 77 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ + P Y V Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 197 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 229 >gi|145630695|ref|ZP_01786474.1| ribonuclease III [Haemophilus influenzae R3021] gi|145641851|ref|ZP_01797426.1| ribonuclease III [Haemophilus influenzae R3021] gi|144983821|gb|EDJ91271.1| ribonuclease III [Haemophilus influenzae R3021] gi|145273473|gb|EDK13344.1| ribonuclease III [Haemophilus influenzae 22.4-21] Length = 227 Score = 260 bits (666), Expect = 9e-68, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 118/226 (52%), Gaps = 9/226 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE++IGY F + +LL++ALTH S + + ERLEFLGD IL I+ L++ F Sbjct: 4 LDRLERKIGYRFNDIALLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALYHQFPR 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS +LV T + +AR+ +L ++ + S K+ SI AD VE++I A Sbjct: 61 CNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGA 120 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + LD G+ V + +++Q +K G ++DAKT LQE+ K P Y+V G Sbjct: 121 MSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGE 180 Query: 184 DHDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 H FTV ++ S+R AEQ AA ++LK I Sbjct: 181 AHCQIFTVECKVKSAEKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226 >gi|328952899|ref|YP_004370233.1| Ribonuclease 3 [Desulfobacca acetoxidans DSM 11109] gi|328453223|gb|AEB09052.1| Ribonuclease 3 [Desulfobacca acetoxidans DSM 11109] Length = 231 Score = 260 bits (666), Expect = 9e-68, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 119/225 (52%), Gaps = 5/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57 M+ + + LE+++ Y+F NR LE+AL HSS ++ + S ERLEF GD +L L IS Sbjct: 1 MTDIHLTELERQLRYSFKNRRWLEQALVHSSYAYEFPLQGPSNERLEFFGDAVLSLFISD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L ++ A EG LS SLV+A + +AR LDL +R+ + S+ AD Sbjct: 61 FLMEYYPQAGEGLLSRWRASLVNARHLAGIARSLDLGGHLRLGRGEEQQSGRRKPSVLAD 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEY 175 +E+++AA+YLDGG A V ++ L+ +D KT LQE+A VTP Y Sbjct: 121 ALEAVLAAVYLDGGFAAARGVVKLLFQASLTRLEDKASMQDFKTLLQEYAQKNLKVTPTY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +V +GP H F V V ++ +G SK+ A Q AA L Sbjct: 181 RVVTATGPAHARTFEVEVWLADQPWGRGQGKSKKQAAQEAARLAL 225 >gi|90420862|ref|ZP_01228767.1| ribonuclease III [Aurantimonas manganoxydans SI85-9A1] gi|90334837|gb|EAS48609.1| ribonuclease III [Aurantimonas manganoxydans SI85-9A1] Length = 252 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 123/236 (52%), Positives = 155/236 (65%), Gaps = 10/236 (4%) Query: 1 MSALR----YSTLEKRIGYAFANRSLLEKALTHSSISH------SYQESYERLEFLGDRI 50 M+ L+ LE RIG F ++ E+ALTHSS+ + SYERLEFLGDR+ Sbjct: 13 MARLKADKPLEELESRIGITFHEKARFERALTHSSLRSSKGGKGEGERSYERLEFLGDRV 72 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 LGL+++ LF+ F A EGELS+R NSLVSA+TC+++A EL L F+R DL+K Sbjct: 73 LGLVVAEKLFDMFPGADEGELSLRLNSLVSADTCAEIADELGLYEFVRHGGDLKKLKSDR 132 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 SI+AD+VESLIAA+YL G+E A F+ +YW R KS RRDAKT LQEWAH + Sbjct: 133 TKSIRADLVESLIAAIYLGEGLETARDFIVRYWGGRLGKSVAARRDAKTALQEWAHTRGP 192 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 VTP+Y++ RSGPDHDP FTV V I +APA G S+R AEQ AA VL RE +W Sbjct: 193 VTPQYEIVERSGPDHDPLFTVRVSIPDVAPADGQGRSRRIAEQEAATAVLIRESVW 248 >gi|27380172|ref|NP_771701.1| RNase III [Bradyrhizobium japonicum USDA 110] gi|27353326|dbj|BAC50326.1| RNase III [Bradyrhizobium japonicum USDA 110] Length = 273 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 99/222 (44%), Positives = 142/222 (63%), Gaps = 3/222 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + LE RIG++FA+ +LL + +TH S +SY+RLEFLGD +LGL++S +L++ F Sbjct: 46 AALEARIGHSFADPNLLMQGITHVSALKSGRKRGDSYQRLEFLGDHVLGLVVSDMLYHAF 105 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +A EGELS R LV E+C+ VA+ L L I++ S S+ D+ E++I Sbjct: 106 PNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSADARLRKSVLGDICEAVI 165 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++LDGG A FV + W +R K + RD KT LQEWA K TP Y+ R+GP Sbjct: 166 GAIFLDGGHAAAAEFVKRNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 225 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 HDP+F V V++ GLAPA+G+ SKRAAE+VAA+ +++REG+ Sbjct: 226 HHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAASVMIEREGV 267 >gi|297620496|ref|YP_003708633.1| ribonuclease III [Waddlia chondrophila WSU 86-1044] gi|297375797|gb|ADI37627.1| ribonuclease III [Waddlia chondrophila WSU 86-1044] Length = 252 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 118/220 (53%), Gaps = 4/220 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 S +E +IG+ F ++ LL A TH S + E ERLE+LGD ILG LI+ L+ + Sbjct: 21 SEIEAKIGHTFKDKQLLSLAFTHRSYINENNDAHEHNERLEYLGDSILGFLIAEYLYKYL 80 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EGELS + LV A +C ++LDL ++ + + + SI AD+ ESLI Sbjct: 81 PNTPEGELSYLRSRLVEASSCVIYVQKLDLEQYLLLGKGEQMNDGRGRDSILADLFESLI 140 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLDGG++ A F+ K + + + K + K +LQ++ K+ P YKV SG Sbjct: 141 GAIYLDGGMDAARLFLFKNFSKEIEEILKTPICNWKAQLQDYCQKKYRHPPLYKVVSESG 200 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 PDH FT+ V I+ G SK+ A+Q AA + R Sbjct: 201 PDHQKIFTISVLINNQEVGHGEGPSKKEAQQAAAKDAFSR 240 >gi|319405458|emb|CBI79077.1| ribonuclease III [Bartonella sp. AR 15-3] Length = 235 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 110/226 (48%), Positives = 147/226 (65%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LEK G++F + L++ALTH+S+ S +YERLEFLGDR+LGLLI+ +L+ Sbjct: 1 MKYHVIDQLEKLTGHSFKDVDRLKRALTHASVQSSENGNYERLEFLGDRVLGLLIAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +A E+ L+ + V +++ + ++ ADV+E Sbjct: 61 KIFPQASEGELSVRLNGLVNAQTCADIALEMGLSDMVHVGCEMKNLEGRRLANVYADVIE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG+E + +YW+ RA K RRDAKTELQEWAH + P Y+V R Sbjct: 121 ALIAVIYLDGGLESVRPVIQRYWQDRAKKMNAGRRDAKTELQEWAHTQDNAQPHYQVVQR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDHDP F V V I G AP G SKR AE+ AA +L+REGIW Sbjct: 181 YGPDHDPIFIVEVSICGYAPEIGRGSSKRQAERDAAERILRREGIW 226 >gi|295706311|ref|YP_003599386.1| ribonuclease III [Bacillus megaterium DSM 319] gi|294803970|gb|ADF41036.1| ribonuclease III [Bacillus megaterium DSM 319] Length = 265 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 106/225 (47%), Gaps = 5/225 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 ++ +K IG F N +LL +A THSS + ++ E ERLEFLGD +L L +S Sbjct: 34 KQNFAEFQKEIGIQFTNEALLFQAFTHSSYVNEHRRRPYEDNERLEFLGDAVLELTVSQF 93 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + + EGEL+ ++V + A E+D + + ++ ADV Sbjct: 94 LFKKYPTMSEGELTKLRAAVVCEPSLVTFANEMDFGKLVLLGKGEEMTGGRSRPALLADV 153 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ I ALYLD G++ T + K + + D K++LQE EYKV Sbjct: 154 FEAFIGALYLDQGLDTVVTILKKVVFPKINEGAFSHVMDFKSQLQEVIQRDGVGQLEYKV 213 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H+ F V ++G G+ SK+ AEQ AA + + Sbjct: 214 LQEKGPAHNREFLSRVSLNGEELGVGVGRSKKEAEQKAAQVAITK 258 >gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168] gi|221309468|ref|ZP_03591315.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168] gi|221313793|ref|ZP_03595598.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318717|ref|ZP_03600011.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. JH642] gi|221322988|ref|ZP_03604282.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. SMY] gi|321315359|ref|YP_004207646.1| ribonuclease III [Bacillus subtilis BSn5] gi|7531275|sp|P51833|RNC_BACSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|2633965|emb|CAB13466.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168] gi|291484144|dbj|BAI85219.1| ribonuclease III [Bacillus subtilis subsp. natto BEST195] gi|320021633|gb|ADV96619.1| ribonuclease III [Bacillus subtilis BSn5] Length = 249 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 108/225 (48%), Gaps = 5/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS L Sbjct: 18 EQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F + + EG+L+ ++V + +A EL + + ++ ADV Sbjct: 78 FAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVF 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+ I ALYLD G+E +F+ Y + D K++LQE+ + EYK++ Sbjct: 138 EAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFKSQLQEYVQRDGKGSLEYKIS 197 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F +V + G G SK+ AEQ AA E L + Sbjct: 198 NEKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAKL 242 >gi|154253314|ref|YP_001414138.1| ribonuclease III [Parvibaculum lavamentivorans DS-1] gi|154157264|gb|ABS64481.1| Ribonuclease III [Parvibaculum lavamentivorans DS-1] Length = 226 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 92/220 (41%), Positives = 128/220 (58%), Gaps = 3/220 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L+ R+ + F + LL +ALTH S +Y+R EFLGDR+LGL+I+ L F A Sbjct: 6 AALQVRLAHDFKDLGLLSRALTHPSAD---GANYQRFEFLGDRVLGLVIADWLLRDFPQA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL++R+N+LV E C++VA + L + I + + K +I AD E++IAAL Sbjct: 63 DEGELAIRYNALVRKEACAEVAERIGLGACITMGAGEEKAGGRRKPAILADACEAVIAAL 122 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y DGG++ A F++ W KS + +DAKT LQEWA A+ P Y + RSGPDH Sbjct: 123 YTDGGLQAARRFIETEWAYLVEKSSEIPQDAKTALQEWAQARGQGVPTYTLVGRSGPDHA 182 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 P FTV V P + SKR AEQ AA +L+ G+W Sbjct: 183 PEFTVEVSAGKAKPLRAQGNSKRQAEQTAARALLEALGVW 222 >gi|18310700|ref|NP_562634.1| ribonuclease III [Clostridium perfringens str. 13] gi|168210649|ref|ZP_02636274.1| ribonuclease III [Clostridium perfringens B str. ATCC 3626] gi|168214195|ref|ZP_02639820.1| ribonuclease III [Clostridium perfringens CPE str. F4969] gi|168217005|ref|ZP_02642630.1| ribonuclease III [Clostridium perfringens NCTC 8239] gi|182625857|ref|ZP_02953623.1| ribonuclease III [Clostridium perfringens D str. JGS1721] gi|22654058|sp|Q8XJN8|RNC_CLOPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|18145381|dbj|BAB81424.1| ribonuclease III [Clostridium perfringens str. 13] gi|170711273|gb|EDT23455.1| ribonuclease III [Clostridium perfringens B str. ATCC 3626] gi|170714262|gb|EDT26444.1| ribonuclease III [Clostridium perfringens CPE str. F4969] gi|177908891|gb|EDT71383.1| ribonuclease III [Clostridium perfringens D str. JGS1721] gi|182380899|gb|EDT78378.1| ribonuclease III [Clostridium perfringens NCTC 8239] Length = 237 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 122/228 (53%), Gaps = 4/228 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M + +EK IG F N+ +L ALTHSS ++ ++ + ERLEFLGD +L L ++ Sbjct: 1 MKDINLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKY 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LFN++ EGEL+ +V + +V++ L L +IR+S TSIQAD Sbjct: 61 LFNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADA 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYK 176 +E++IAA+YLD GIEVA F+ + +K K+ + D KT LQE V Y Sbjct: 121 LEAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYN 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + GP H +F + I+ QG+ SK+ +EQ AA L+R G Sbjct: 181 LVKHEGPPHRRKFFTDLLINNEIMGQGVGFSKKESEQNAAKAALQRLG 228 >gi|312868336|ref|ZP_07728536.1| ribonuclease III [Streptococcus parasanguinis F0405] gi|311096081|gb|EFQ54325.1| ribonuclease III [Streptococcus parasanguinis F0405] Length = 233 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 8/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L +R F++ SLL+ A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MEKLQ-ALLSERFQIVFSDSSLLDTAFTHTSYANEHRLLKISHNERLEFLGDAVLQLVIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + +R+ +I++ K +I Sbjct: 60 EYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDHYIKLGKGEEKSGGRDRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E F+ + + +++G+F + D KT LQE V + Sbjct: 120 DLFEAFLGALLLDQGVEAVKRFIYQVMIPK-VETGQFSQVIDYKTRLQELLQVHGDVEIQ 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y+V +GP H F V V ++G G SK+ AEQ AA ++ Sbjct: 179 YQVVSEAGPAHAKEFEVEVFVNGQTMGHGHGRSKKLAEQEAARNAVE 225 >gi|25010800|ref|NP_735195.1| ribonuclease III [Streptococcus agalactiae NEM316] gi|76788414|ref|YP_329471.1| ribonuclease III [Streptococcus agalactiae A909] gi|76798198|ref|ZP_00780449.1| ribonuclease III [Streptococcus agalactiae 18RS21] gi|77406421|ref|ZP_00783480.1| ribonuclease III [Streptococcus agalactiae H36B] gi|77408361|ref|ZP_00785102.1| ribonuclease III [Streptococcus agalactiae COH1] gi|77410795|ref|ZP_00787153.1| ribonuclease III [Streptococcus agalactiae CJB111] gi|77413080|ref|ZP_00789281.1| ribonuclease III [Streptococcus agalactiae 515] gi|81457210|sp|Q8E680|RNC_STRA3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101649|sp|Q3K1Y2|RNC_STRA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101650|sp|Q8E0K7|RNC_STRA5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|23095154|emb|CAD46389.1| Unknown [Streptococcus agalactiae NEM316] gi|76563471|gb|ABA46055.1| ribonuclease III [Streptococcus agalactiae A909] gi|76586461|gb|EAO62968.1| ribonuclease III [Streptococcus agalactiae 18RS21] gi|77160873|gb|EAO71983.1| ribonuclease III [Streptococcus agalactiae 515] gi|77163174|gb|EAO74127.1| ribonuclease III [Streptococcus agalactiae CJB111] gi|77173042|gb|EAO76170.1| ribonuclease III [Streptococcus agalactiae COH1] gi|77174985|gb|EAO77795.1| ribonuclease III [Streptococcus agalactiae H36B] Length = 228 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M LR S LEK G FAN+ LL+ A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELR-SKLEKDYGIVFANQELLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+LS + +V E+ + +R +I++ K +I Sbjct: 60 QYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD G+EV FV+K K + +D KT LQE + V +Y Sbjct: 120 DLFEAFLGALLLDKGVEVVHAFVNKVMIPHVEKGTYERVKDYKTSLQELLQSHGDVKIDY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +VT SGP H F V V ++ +QG+ SK+AAEQ AA L Sbjct: 180 QVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNAL 224 >gi|319896432|ref|YP_004134625.1| ribonuclease iii [Haemophilus influenzae F3031] gi|317431934|emb|CBY80282.1| Ribonuclease III [Haemophilus influenzae F3031] Length = 227 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 118/226 (52%), Gaps = 9/226 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE++IGY F + LL++ALTH S + + ERLEFLGD IL I+ L++ F Sbjct: 4 LDRLERKIGYCFNDIVLLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALYHQFPR 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS +LV T + +AR+ +L ++ + S K+ SI AD VE++I A Sbjct: 61 CNEGELSRMRATLVRESTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGA 120 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + LD G+ V + +++Q +K G ++DAKT LQE+ K P Y+V G Sbjct: 121 MSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGE 180 Query: 184 DHDPRFTVVVEIS--GL--APAQGMDCSKRAAEQVAAAEVLKREGI 225 H FTV ++ G S+R AEQ AA ++LK I Sbjct: 181 AHCQIFTVECKVKSAGKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226 >gi|167758292|ref|ZP_02430419.1| hypothetical protein CLOSCI_00630 [Clostridium scindens ATCC 35704] gi|167664189|gb|EDS08319.1| hypothetical protein CLOSCI_00630 [Clostridium scindens ATCC 35704] Length = 235 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 115/223 (51%), Gaps = 5/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 LEK+IGY F + LL+KA+ HSS ++ E ERLEFLGD +L L+ S LF Sbjct: 8 ELKELEKKIGYTFKDLQLLKKAMLHSSYANEKHLPKYECNERLEFLGDAVLELVSSEFLF 67 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EGEL+ S+V + AREL L ++ + SI +D +E Sbjct: 68 YEHEKMPEGELTKTRASMVCEPALAFCARELSLGEYLLLGKGEEATGGRKRESITSDAME 127 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI A+Y+DGG A F+ ++ Q L+ K D+KT LQE A F T Y++ Sbjct: 128 ALIGAIYIDGGFASAKEFIHRFILQ-DLEDKKLFFDSKTILQEIVQANFKETISYRLVRE 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V+V I G +K+AAEQ AA + + + Sbjct: 187 EGPDHDKSFHVMVYIGEEEYGLGKGRTKKAAEQEAAYQSILKL 229 >gi|42523419|ref|NP_968799.1| ribonuclease III [Bdellovibrio bacteriovorus HD100] gi|81617308|sp|Q6MLR5|RNC_BDEBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|39575625|emb|CAE79792.1| ribonuclease III [Bdellovibrio bacteriovorus HD100] Length = 234 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 6/221 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 +LE+R+G+ F N +LLE+ALTH S ++ + E E+LEFLGD +L L++ L+ F Sbjct: 7 KSLEERVGHQFKNPALLERALTHKSFANELRNTVEHNEKLEFLGDAVLDLVVGEFLYEKF 66 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG LS + S+V+ E S++A E+ L +++ + + A E+++ Sbjct: 67 PTDTEGGLSKKRASIVNEEVLSELALEMGLNKLMQLGKGEALTGGAQKPRLIASSFEAIV 126 Query: 124 AALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ALYLDGG EVA +F+ + + R F RD KT LQE TP Y+V Sbjct: 127 GALYLDGGFEVARSFIRQEFVPLADRVCGHEDFERDYKTRLQELVQKSSKETPRYEVLAE 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP HD F V V++ AQG SK+ AEQ+AA L+ Sbjct: 187 EGPPHDREFLVCVKVKEDVWAQGRGRSKKNAEQMAAKNALE 227 >gi|322391777|ref|ZP_08065242.1| ribonuclease III [Streptococcus peroris ATCC 700780] gi|321145257|gb|EFX40653.1| ribonuclease III [Streptococcus peroris ATCC 700780] Length = 232 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ R FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNRFAIEFADQNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDEFIKLGKGEEKSGGRHRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVATVKNFIYTVMIPKVETGDFEMITDYKTHLQELLQVNGDVDICY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +VT +GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 180 QVTSETGPAHDKIFEVEVLVEGTSIGKGQGRSKKLAEQEAAKNAVEK 226 >gi|258514469|ref|YP_003190691.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771] gi|257778174|gb|ACV62068.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771] Length = 259 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 113/222 (50%), Gaps = 6/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60 L +++G A+ + +LL +ALTHSS + + +RLEFLGD +L LL+S L+ Sbjct: 7 NIMQLMQQVGVAWNDENLLWQALTHSSYVYESGSAAHTNNQRLEFLGDAVLELLVSGYLY 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EGEL+ ++V + ++VAR+L+L +R+ + SI AD E Sbjct: 67 SSYPECAEGELTKLRAAIVCEPSLAKVARQLNLGYCLRMGKGEERSGGRERPSILADSFE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +L+ A+YLD G+E F K+ + G+ RD KTELQE K Y + Sbjct: 127 ALLGAVYLDQGLEKTRMFALKFLAPVINDVLEGRVDRDYKTELQEMLQKKSPEPISYVIL 186 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDH FT V G+ QG SK+ AEQ AA L Sbjct: 187 NEEGPDHQKLFTAGVVYCGIIIGQGTGRSKKEAEQQAAKIAL 228 >gi|284032688|ref|YP_003382619.1| ribonuclease III [Kribbella flavida DSM 17836] gi|283811981|gb|ADB33820.1| ribonuclease III [Kribbella flavida DSM 17836] Length = 249 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 110/222 (49%), Gaps = 6/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 Y+ L +R+G + A+ LLE A TH S ++ + ERLEFLGD +LG++++ LF + Sbjct: 16 YAELNQRLGVSLAD-ELLEHAFTHRSFAYENGGLPTNERLEFLGDSVLGVIVTESLFRNH 74 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ ++V+ + VAR+L L ++R+ +SI AD VE+LI Sbjct: 75 PDLSEGRLAKLRAAVVNMRALAGVARDLKLGKYLRLGRGEEATGGRDKSSILADCVEALI 134 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G EVAG V + S + D KT LQE PEY V S Sbjct: 135 GAVYLDRGFEVAGRVVHTLFDDLMESSARLGAGLDWKTSLQELVAQLGVGVPEY-VIAES 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH F V I G+ SK+ AEQ AA K Sbjct: 194 GPDHAKTFEARVRIGSDTYGHGIGRSKKEAEQQAAETAWKAL 235 >gi|307545610|ref|YP_003898089.1| ribonuclease III [Halomonas elongata DSM 2581] gi|307217634|emb|CBV42904.1| ribonuclease III [Halomonas elongata DSM 2581] Length = 229 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 79/218 (36%), Positives = 115/218 (52%), Gaps = 6/218 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +RIG+ FA LLE A+TH S + ERLEFLGD I+ +I+ LF F A+E Sbjct: 8 FSRRIGHRFAQPELLELAMTHRSYG---GRNNERLEFLGDSIVNFVIAEDLFQRFPQARE 64 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS LV +T +++ARE+ +R+ S K SI AD VE++I A+YL Sbjct: 65 GQLSRLRARLVKGQTLAELAREMSFGECLRLGSGEMKSGGHRRDSILADAVEAVIGAIYL 124 Query: 129 DGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G++ A T V ++ +R + ++D KT LQE+ ++ P Y+V G H Sbjct: 125 DAGMDTARTRVLSWFAERLETINLQDTQKDPKTRLQEFLQSRQVALPRYEVISVEGEAHA 184 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 FTV + L G+ S+R AEQ AA + L + Sbjct: 185 QTFTVECHVEMLDEHTLGIGSSRRHAEQQAAEQALSQL 222 >gi|312143881|ref|YP_003995327.1| ribonuclease III [Halanaerobium sp. 'sapolanicus'] gi|311904532|gb|ADQ14973.1| ribonuclease III [Halanaerobium sp. 'sapolanicus'] Length = 238 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 76/212 (35%), Positives = 111/212 (52%), Gaps = 6/212 (2%) Query: 18 ANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 +N+ LL++ALTH S + + + ERLEFLGD +L L +ST +FN F EGEL+ Sbjct: 22 SNKKLLQRALTHKSFPNENKNLSIKDNERLEFLGDSVLSLAVSTYIFNKFSDFPEGELAK 81 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 +VSA ++ A++L+L ++ + SI AD +E++ ALYLD G Sbjct: 82 MRAVVVSAPILAEAAKKLELGRYLFLGKGEEMTGGRERDSILADSMEAIFGALYLDQGFT 141 Query: 134 VAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 A FV K K+ + + G +D KT LQE + PEY+V GPDH+ F V Sbjct: 142 AASDFVLKILKEDIKEVAMGNHIQDYKTMLQEIIQQDGNIRPEYEVIDEKGPDHNKTFIV 201 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V++ + G SK+ AEQ AA L + Sbjct: 202 AVKLKENSLGSGQGSSKKEAEQEAAKFALHKL 233 >gi|37681015|ref|NP_935624.1| ribonuclease III [Vibrio vulnificus YJ016] gi|37199765|dbj|BAC95595.1| dsRNA-specific ribonuclease [Vibrio vulnificus YJ016] Length = 259 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 112/213 (52%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ L +++GY F + LL ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 35 MNS-PIEKLTRQLGYQFQDDELLNLALTHRSANSKH---NERLEFLGDSILSFVIADELY 90 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE L ++++ K SI AD VE Sbjct: 91 HRFPKVNEGDMSRMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVE 150 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD +EV V ++ R A+K G ++D KT LQE+ + P Y VT Sbjct: 151 AIIGAVYLDSDLEVVRGIVLNWYASRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 210 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H+ FTV +I+G+ P G S+R Sbjct: 211 NIKGEAHNQEFTVECDIAGMDKPVVGRGTSRRK 243 >gi|302036171|ref|YP_003796493.1| ribonuclease III [Candidatus Nitrospira defluvii] gi|300604235|emb|CBK40567.1| Ribonuclease III [Candidatus Nitrospira defluvii] Length = 234 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 119/231 (51%), Gaps = 9/231 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIST 57 A +++ +GY F LLE+ALTH S S+ + ERLEFLGD +L L++S Sbjct: 3 PATSIEAVQRLLGYRFHQPRLLEEALTHKSYSNERRSRDRTQNERLEFLGDAVLSLVMSE 62 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L F + EG LS LVS + ++ AR + L +R+ S+ AD Sbjct: 63 YLAAEFPGSNEGGLSKLKAHLVSEASLAKAARRMKLGRLLRLGKGEELSKGREKHSLLAD 122 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-----RDAKTELQEWAHAKFGVT 172 +E+LIAA+YLDGG+E + F + ++ L + + D KT+LQE ++ Sbjct: 123 ALEALIAAIYLDGGLEASRKFTLQVLEEELLATRAEQARPGMEDYKTQLQEVCQKRYESL 182 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P+Y+ SGPDH+ F V + I G+ G SK+ AEQ+AA E L + Sbjct: 183 PQYETVRESGPDHEKVFEVELTIQGVMRGIGRGRSKKEAEQMAAKEALTQL 233 >gi|224372163|ref|YP_002606535.1| ribonuclease III [Nautilia profundicola AmH] gi|223589278|gb|ACM93014.1| ribonuclease III [Nautilia profundicola AmH] Length = 226 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 123/225 (54%), Gaps = 7/225 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ S LEK +GY F N+ L+ +ALTH S + ERLEFLGD ++ L++ LF+ F Sbjct: 1 MQISELEKSLGYQFKNKKLITEALTHRSYKKEV--NNERLEFLGDAVMDLIVGEYLFHLF 58 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A+EG LS +LV+ ++ +++A+ L+L ++ +S + SI + E++I Sbjct: 59 PKAEEGILSKLRAALVNEDSFTRLAKRLNLGKYLYLSPAEENNNGREKPSILSSAFEAVI 118 Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YL+ G E A + K+ + + +D KT LQE A FGV PEY++ S Sbjct: 119 GAIYLEAGFEKAKDVALRLLKEEFPIITPEELLKDYKTTLQEITQAHFGVVPEYRLISAS 178 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223 GPDH F + V I A+ SK+ A+Q A ++LK+E Sbjct: 179 GPDHKKEFEIGVFIQDKEYARAKGKSKKTAQQEGARLTIDMLKKE 223 >gi|149910155|ref|ZP_01898801.1| ribonuclease III [Moritella sp. PE36] gi|149806741|gb|EDM66705.1| ribonuclease III [Moritella sp. PE36] Length = 223 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 122/225 (54%), Gaps = 7/225 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + L+ +GY + + LL++ALTH S + + ERLEFLGD +LG +IS LF Sbjct: 1 MTII-LERLQTVLGYQYQDAGLLQQALTHRSAYYKH---NERLEFLGDSVLGFIISDALF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+LS +LV T +++ARE +L+ + + K SI AD VE Sbjct: 57 RQFPEVPEGDLSRMRATLVKGLTLAEIAREFELSECLILGPGELKSGGFRRESILADTVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD IE V ++ R ++ G ++DAKT+LQEW + P Y+V Sbjct: 117 ALIGAMYLDSDIEKTRERVLAWYASRLATIEPGIGQKDAKTQLQEWLQGRKQPLPLYQVV 176 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 G H+ FT+ I GL P +G S+R AEQ AA + L++ Sbjct: 177 EVRGEAHNQEFTIHCVIEGLDHPVEGKGTSRRKAEQEAAQKALEQ 221 >gi|30179749|sp|O69161|RNC_BRAJA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 250 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 99/222 (44%), Positives = 142/222 (63%), Gaps = 3/222 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + LE RIG++FA+ +LL + +TH S +SY+RLEFLGD +LGL++S +L++ F Sbjct: 23 AALEARIGHSFADPNLLMQGITHVSALKSGRKRGDSYQRLEFLGDHVLGLVVSDMLYHAF 82 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +A EGELS R LV E+C+ VA+ L L I++ S S+ D+ E++I Sbjct: 83 PNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSADARLRKSVLGDICEAVI 142 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++LDGG A FV + W +R K + RD KT LQEWA K TP Y+ R+GP Sbjct: 143 GAIFLDGGHAAAAEFVKRNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 202 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 HDP+F V V++ GLAPA+G+ SKRAAE+VAA+ +++REG+ Sbjct: 203 HHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAASVMIEREGV 244 >gi|225868184|ref|YP_002744132.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus] gi|259646553|sp|C0MCR4|RNC_STRS7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|225701460|emb|CAW98596.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus] Length = 230 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 116/229 (50%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L + LE F ++ LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MKKLE-ALLENSFNIRFDDKRLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG++S +++V E+ + +R ++I++ K +I Sbjct: 60 EYLFAKYPKQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGKGEEKSGGRHRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD GIE F+++ + ++ G F +D KT LQE AK V + Sbjct: 120 DLFEAFLGALLLDKGIEEVRRFLNQVMIPQ-VEQGTFEKVKDYKTCLQELLQAKGDVVID 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V +GP H +F V V + ++G SK+ AEQ AA L + Sbjct: 179 YQVISETGPAHAKQFEVAVLVDEDRLSKGTGRSKKLAEQDAAKNALAQL 227 >gi|157374287|ref|YP_001472887.1| ribonuclease III [Shewanella sediminis HAW-EB3] gi|189043354|sp|A8FSD6|RNC_SHESH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157316661|gb|ABV35759.1| Ribonuclease III [Shewanella sediminis HAW-EB3] Length = 225 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M ++ L + +GY F ++SLLE ALTH S S + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNMPRLCRTLGYEFNDQSLLEHALTHRSASSKH---NERLEFLGDSILSIIISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F+ F A EG+LS +LV + +++ E L ++ + K SI AD V Sbjct: 58 FHQFPKATEGDLSRMRATLVCGKMLAEIGFEFKLGDYLNLGPGELKSGGFRRESIIADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+Y+D G+E V +++ R A+ ++D KT LQE P YKV Sbjct: 118 EAIIGAVYIDSGVEKCRCLVLSWYESRLAIIQPVNQKDPKTLLQELLQGFKKPLPVYKVI 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 G H FTV + L P G+ S+R AEQ+AAA+ L+ Sbjct: 178 DIKGEAHAQTFTVECYVEELSKPVIGIASSRRKAEQLAAADALE 221 >gi|306829619|ref|ZP_07462809.1| ribonuclease III [Streptococcus mitis ATCC 6249] gi|304428705|gb|EFM31795.1| ribonuclease III [Streptococcus mitis ATCC 6249] Length = 232 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 110/227 (48%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ R FA++ LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKDRFAIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPRKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + +D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVVRVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +VT +GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 180 QVTSETGPAHDKIFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226 >gi|218132444|ref|ZP_03461248.1| hypothetical protein BACPEC_00303 [Bacteroides pectinophilus ATCC 43243] gi|217992554|gb|EEC58556.1| hypothetical protein BACPEC_00303 [Bacteroides pectinophilus ATCC 43243] Length = 234 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 119/228 (52%), Gaps = 7/228 (3%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLI 55 M+ + + L++ +GY+F + SLL+ ALTHSS ++ + + ERLEFLGD +L L+ Sbjct: 7 MNHSTDLNELQQAMGYSFDDVSLLKHALTHSSYANELRINKTGNNERLEFLGDAVLELVS 66 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S LFN EG LS S+V + + AR++ L +I + SI Sbjct: 67 SEYLFNEHKDVNEGSLSKLRASMVCEPSLAFCARDISLQKYIMLGKGEDATGGRQRDSIT 126 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 +D +E++I A+YLDGG E A F+ + L + K D+KT LQE A TPEY Sbjct: 127 SDALEAVIGAIYLDGGFEPAKKFIMAHVL-NDLDNKKLFYDSKTILQEILQADNK-TPEY 184 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++T GP+H F+ V G +K+AAEQ AA + + R Sbjct: 185 RITGEEGPEHSKTFSAEVLDGSTVLGHGSGHNKKAAEQQAAYDAILRL 232 >gi|319758292|gb|ADV70234.1| dsRNA-specific ribonuclease [Streptococcus suis JS14] Length = 228 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 107/225 (47%), Gaps = 7/225 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 ++ L G F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS L+ Sbjct: 5 HAKLLDDFGIDFSDLNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLMISKYLYQ 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGE+S ++ V E+ + +R F+R+ K +I D E+ Sbjct: 65 KYPDRPEGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILGDAFEA 124 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 + AL LD G + F+ K R L+ G F R D KT LQE + Y+V Sbjct: 125 FLGALLLDKGEKTVEEFIHKVMIPR-LEKGNFERVTDYKTALQEILQVNGEIAISYQVIA 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP HD F V V +G SK+ AEQ AA ++ G Sbjct: 184 ESGPAHDKTFEVEVSADQRVIGRGRGRSKKLAEQAAAKNAVEARG 228 >gi|332074858|gb|EGI85330.1| ribonuclease III [Streptococcus pneumoniae GA41301] Length = 232 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 8/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ F +++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFTDKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+ + AL LD + F+ + + +++G+F D KT LQE V Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVVIR 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|257464706|ref|ZP_05629077.1| ribonuclease III [Actinobacillus minor 202] gi|257450366|gb|EEV24409.1| ribonuclease III [Actinobacillus minor 202] Length = 223 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 121/222 (54%), Gaps = 6/222 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY F L +ALTH S + ++ ERLEFLGD IL I L++ F Sbjct: 1 MQLERLQKKLGYQFETLDYLTQALTHRSAA---SKNNERLEFLGDSILNFTIGKALYDKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ +L ++++ + K SI +D VE++I Sbjct: 58 PKADEGELSRMRAALVREQTLAVIARQFELGEYLKLGAGELKSGGFRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G+E A + +++ + G+ ++D KT LQE+ + PEY+V Sbjct: 118 AAIYLDKGMEPAMERIYAWYETFLAEITPGEAQKDPKTRLQEFLQGRKLPLPEYEVIDIK 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222 G H+ F V ++ G+ G S+R AEQ A +VL + Sbjct: 178 GEAHNQTFKVTCKVQGIDEIFTGQGTSRRKAEQNVAEKVLTQ 219 >gi|304321233|ref|YP_003854876.1| ribonuclease III [Parvularcula bermudensis HTCC2503] gi|303300135|gb|ADM09734.1| ribonuclease III [Parvularcula bermudensis HTCC2503] Length = 238 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 95/213 (44%), Positives = 126/213 (59%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 G+ F +RSLL +ALTH+S+S + ERLEFLGDR+LGLL + LL+ F EGEL+ Sbjct: 22 GHRFDDRSLLARALTHASVSQDGLKDLERLEFLGDRVLGLLAADLLWRRFPDMAEGELAP 81 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 R N+LV ETC+ AR L +R+S+ + +I D ESL+ A+Y+DGG+ Sbjct: 82 RLNALVRRETCADAARHWKLGEAVRMSAGEERTGGRNKDAILGDACESLLGAIYIDGGLG 141 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 A T + YW R + DAKT LQEWA K TP Y+ R GPDH P FTV V Sbjct: 142 AAKTAFETYWTPRVEELIDDHADAKTALQEWAQEKGLGTPSYRDIDRDGPDHAPIFTVAV 201 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 + GL A+ +KR+A+ AA +L REG+W Sbjct: 202 VVQGLESAEARGPNKRSAQMQAARSILVREGVW 234 >gi|114570121|ref|YP_756801.1| ribonuclease III [Maricaulis maris MCS10] gi|114340583|gb|ABI65863.1| RNAse III [Maricaulis maris MCS10] Length = 228 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 106/221 (47%), Positives = 136/221 (61%), Gaps = 2/221 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + LE+RIGY F ++ L+E+ALTH S + + +YERLEFLGDR+LGL+ + LF F Sbjct: 5 IARLEQRIGYVFTDKRLIERALTHGSFAEGRKTIPTYERLEFLGDRVLGLMTAEALFKSF 64 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 D A EG L+ R NS+V ETC+ VAR +DL + +R+ K TSI D ESL+ Sbjct: 65 DKADEGALAPRLNSMVRKETCADVARAVDLGAALRIGKSEEKGGGRNKTSILGDACESLM 124 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AA+YLDGG F D +W R DAK+ LQEWA P Y++T RSGP Sbjct: 125 AAIYLDGGRAAVQAFFDHHWGPRIEALKAKPLDAKSALQEWAAKTGRGVPRYELTERSGP 184 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH P FTV V ++ LAPA G SK+ AE+ AA E+LKREG Sbjct: 185 DHRPVFTVQVTVTPLAPAVGEGGSKQVAERAAAEELLKREG 225 >gi|160938006|ref|ZP_02085363.1| hypothetical protein CLOBOL_02899 [Clostridium bolteae ATCC BAA-613] gi|158439000|gb|EDP16755.1| hypothetical protein CLOBOL_02899 [Clostridium bolteae ATCC BAA-613] Length = 234 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M++ LE+RI Y F N++L +ALTHSS ++ ++ ERLEFLGD +L ++ S Sbjct: 1 MNS-HLKELEERIAYEFKNKNLFTQALTHSSYANEHRLDHSRCNERLEFLGDAVLEIVTS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ +++ EG+L+ S+V T + A +++L ++ + S+ + Sbjct: 60 EFLYRKYETLPEGDLTKIRASIVCEPTLAYCAGDIELGQYLYLGKGEDATGGRNRNSVVS 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+LI A+YLDGG A F+ ++ ++ + D+KT LQE ++ Y+ Sbjct: 120 DAMEALIGAIYLDGGFANAKEFIHRFIL-NDIEHKQLFYDSKTILQEMVQSRQEAPLSYE 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GPDH+ F V +I +G +K+AAEQVAA + + Sbjct: 179 IIREEGPDHNKSFEVCAKIGDEEVGRGAGRTKKAAEQVAAYNGILKL 225 >gi|296104242|ref|YP_003614388.1| ribonuclease III [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058701|gb|ADF63439.1| ribonuclease III [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 239 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 14 MNPIVINRLQRKLGYTFHHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 70 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 71 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 130 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 131 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 190 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 191 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 223 >gi|170719010|ref|YP_001784170.1| ribonuclease III [Haemophilus somnus 2336] gi|189043321|sp|B0USS1|RNC_HAES2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|168827139|gb|ACA32510.1| Ribonuclease III [Haemophilus somnus 2336] Length = 223 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 126/225 (56%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++G+ F N L++ALTH S + + ERLEFLGD IL I L+ F Sbjct: 1 MQLEKLQKKLGHQFTNLDYLKQALTHRSAA---AFNNERLEFLGDSILNFAIGKALYEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EGELS +LV +T + VAR+++L ++++ + K SI +D VE+LI Sbjct: 58 PKSNEGELSRMRATLVKEQTLAVVARQVELGDYLKLGAGELKSGGFRRESILSDCVEALI 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD GI+VA V +++++ +K G+ ++D KT LQE+ PEY+V Sbjct: 118 AAIYLDAGIDVALARVYQWYQELLEQIKPGEAQKDPKTRLQEFLQGHRLKLPEYEVIEIK 177 Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V ++ L G S+R AEQ AA + +++ I Sbjct: 178 GDAHNQSFRVSCKVETLTDVVFGQGTSRRKAEQHAAQQAIEKLKI 222 >gi|195978496|ref|YP_002123740.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975201|gb|ACG62727.1| ribonuclease III Rnc [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 231 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 116/229 (50%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L + LE F ++ LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 2 MKKLE-ALLENSFNIRFDDKRLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG++S +++V E+ + +R ++I++ K +I Sbjct: 61 EYLFAKYPKQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGKGEEKSGGRHRETILG 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD GIE F+++ + ++ G F +D KT LQE AK V + Sbjct: 121 DLFEAFLGALLLDKGIEEVRRFLNQVMIPQ-VEQGTFEKVKDYKTCLQELLQAKGDVVID 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V +GP H +F V V + ++G SK+ AEQ AA L + Sbjct: 180 YQVISETGPAHAKQFEVAVLVDEDRLSKGTGRSKKLAEQDAAKNALAQL 228 >gi|157692273|ref|YP_001486735.1| ribonuclease III [Bacillus pumilus SAFR-032] gi|157681031|gb|ABV62175.1| ribonuclease III [Bacillus pumilus SAFR-032] Length = 247 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 105/225 (46%), Gaps = 5/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS L Sbjct: 16 EQFREFQQRISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFL 75 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F + + EG+L+ ++V + +A EL + + ++ ADV Sbjct: 76 FAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVF 135 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+ I ALYLD G+E F++ Y + D K++LQE+ EY++ Sbjct: 136 EAFIGALYLDQGLEPVERFLEAYVYPKINDGAFSHVMDFKSQLQEFVQRDGKGVLEYRIL 195 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F V + G G SK+ AEQ AA E L + Sbjct: 196 HEKGPAHNREFEANVSLRGEVLGIGNGRSKKEAEQHAAQEALAKL 240 >gi|113461383|ref|YP_719452.1| ribonuclease III [Haemophilus somnus 129PT] gi|112823426|gb|ABI25515.1| RNAse III [Haemophilus somnus 129PT] Length = 227 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 126/225 (56%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++G+ F N L++ALTH S + + ERLEFLGD IL I L+ F Sbjct: 5 MQLEKLQKKLGHQFTNLDYLKQALTHRSAA---AFNNERLEFLGDSILNFAIGKALYEKF 61 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EGELS +LV +T + VAR+++L ++++ + K SI +D VE+LI Sbjct: 62 PKSNEGELSRMRATLVKEQTLAVVARQVELGDYLKLGAGELKSGGFRRESILSDCVEALI 121 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD GI+VA V +++++ +K G+ ++D KT LQE+ PEY+V Sbjct: 122 AAIYLDAGIDVALARVYQWYQELLEQIKPGEAQKDPKTRLQEFLQGHRLKLPEYEVIEIK 181 Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V ++ L G S+R AEQ AA + +++ I Sbjct: 182 GDAHNQSFRVSCKVETLTDVVFGQGTSRRKAEQHAAQQAIEKLKI 226 >gi|309972852|gb|ADO96053.1| RNase III, dsRNA [Haemophilus influenzae R2846] Length = 227 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 117/226 (51%), Gaps = 9/226 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE++IGY F + +LL+ ALTH S + + ERLEFLGD IL I+ L++ F Sbjct: 4 LDRLERKIGYRFNDIALLKLALTHRSAA---TQHNERLEFLGDSILNFTIAEALYHQFPR 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS +LV T + +AR+ +L ++ + S K+ SI AD VE++I A Sbjct: 61 CNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGA 120 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + LD G+ V + +++Q +K G ++DAKT LQE+ K P Y+V G Sbjct: 121 MSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGE 180 Query: 184 DHDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 H FTV ++ S+R AEQ AA ++LK I Sbjct: 181 AHCQIFTVECKVKSAEKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226 >gi|126208025|ref|YP_001053250.1| ribonuclease III [Actinobacillus pleuropneumoniae L20] gi|189043287|sp|A3MZQ9|RNC_ACTP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|126096817|gb|ABN73645.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 223 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF F Sbjct: 1 MQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ L ++R+ + K SI +D VE++I Sbjct: 58 PKANEGELSRMRATLVREQTLAILARQFGLGEYMRLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 118 AAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDIK 177 Query: 182 GPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 178 GEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 220 >gi|16271989|ref|NP_438187.1| ribonuclease III [Haemophilus influenzae Rd KW20] gi|260580682|ref|ZP_05848509.1| ribonuclease III [Haemophilus influenzae RdAW] gi|1173093|sp|P44441|RNC_HAEIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|1572958|gb|AAC21692.1| ribonuclease III (rnc) [Haemophilus influenzae Rd KW20] gi|260092744|gb|EEW76680.1| ribonuclease III [Haemophilus influenzae RdAW] Length = 227 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 118/226 (52%), Gaps = 9/226 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE++IGY F + +LL++ALTH S + + ERLEFLGD IL I+ L++ F Sbjct: 4 LDRLERKIGYRFNDIALLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALYHQFPR 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS +LV T + +AR+ +L ++ + S K+ SI AD VE++I A Sbjct: 61 CNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGA 120 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + LD G+ V + +++Q +K G ++DAKT LQE+ K P Y+V G Sbjct: 121 MSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGE 180 Query: 184 DHDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 H FTV ++ S+R AEQ AA ++LK I Sbjct: 181 AHCQIFTVKCKVKSAEKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226 >gi|22536887|ref|NP_687738.1| ribonuclease III [Streptococcus agalactiae 2603V/R] gi|22533737|gb|AAM99610.1|AE014224_13 ribonuclease III [Streptococcus agalactiae 2603V/R] gi|319744744|gb|EFV97086.1| ribonuclease III [Streptococcus agalactiae ATCC 13813] Length = 236 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M LR S LEK G FAN+ LL+ A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 9 MKELR-SKLEKDYGIVFANQELLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 67 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+LS + +V E+ + +R +I++ K +I Sbjct: 68 QYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTILG 127 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD G+EV FV+K K + +D KT LQE + V +Y Sbjct: 128 DLFEAFLGALLLDKGVEVVHAFVNKVMIPHVEKGTYERVKDYKTSLQELLQSHGDVKIDY 187 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +VT SGP H F V V ++ +QG+ SK+AAEQ AA L Sbjct: 188 QVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNAL 232 >gi|289168052|ref|YP_003446321.1| ribonuclease III [Streptococcus mitis B6] gi|288907619|emb|CBJ22456.1| ribonuclease III [Streptococcus mitis B6] Length = 232 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+ + AL LD + F+ + + +++G+F D KT LQE VT Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVTIR 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|166031773|ref|ZP_02234602.1| hypothetical protein DORFOR_01474 [Dorea formicigenerans ATCC 27755] gi|166028226|gb|EDR46983.1| hypothetical protein DORFOR_01474 [Dorea formicigenerans ATCC 27755] Length = 233 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 LE RIGY F + +LL+KA++HSS + E ERLEFLGD +L L+ S LF Sbjct: 6 NLKELEHRIGYTFQDFALLKKAMSHSSYVNEEHLPKYECNERLEFLGDAVLELVSSEFLF 65 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EGEL+ S+V + ARE++L ++ + S+ +D +E Sbjct: 66 FEHPTTPEGELTKTRASMVCEPALAFCAREIELGEYLLLGKGEDATGGRKRESVTSDAME 125 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI A+Y+DGG A F++++ + L++ K D+KT LQE A F Y + Sbjct: 126 ALIGAIYVDGGFANAKEFINRFILK-DLENKKLFYDSKTILQEIVQAHFKEELSYHLVGE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKREGI 225 GPDHD F V ++I G +K++AEQ AA + +L+++ I Sbjct: 185 EGPDHDKTFQVELQIGEQVYGIGKGRTKKSAEQEAAYKTILMLRKKNI 232 >gi|145635204|ref|ZP_01790908.1| ribonuclease III [Haemophilus influenzae PittAA] gi|229845360|ref|ZP_04465491.1| ribonuclease III [Haemophilus influenzae 6P18H1] gi|145267483|gb|EDK07483.1| ribonuclease III [Haemophilus influenzae PittAA] gi|229811668|gb|EEP47366.1| ribonuclease III [Haemophilus influenzae 6P18H1] Length = 227 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 118/226 (52%), Gaps = 9/226 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE++IGY F N +LL++ALTH S + + ERLEFLGD IL I+ L++ F Sbjct: 4 LDRLERKIGYCFNNIALLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALYHQFPR 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS +LV T + +AR+ +L ++ + S K+ SI AD VE++I A Sbjct: 61 CNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGA 120 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + LD G+ V + +++Q +K G ++DAKT LQE+ K P Y+V G Sbjct: 121 MSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGE 180 Query: 184 DHDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 H FTV ++ S+R AEQ AA ++LK I Sbjct: 181 AHCQIFTVKCKVKSAEKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226 >gi|270292630|ref|ZP_06198841.1| ribonuclease III [Streptococcus sp. M143] gi|270278609|gb|EFA24455.1| ribonuclease III [Streptococcus sp. M143] Length = 232 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 110/227 (48%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+KR FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVARVKEFIYQVMIPKVEVGDFEMITDYKTHLQELLQVNGDVDIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +VT GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 180 QVTSEMGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226 >gi|325265084|ref|ZP_08131811.1| ribonuclease III [Clostridium sp. D5] gi|324029774|gb|EGB91062.1| ribonuclease III [Clostridium sp. D5] Length = 232 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 116/226 (51%), Gaps = 8/226 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 LEK+IGY F + SLL +A+ HSS ++ ERLEFLGD +L L+ S LF Sbjct: 7 NLKELEKKIGYKFRDFSLLRRAMMHSSFTNEKHLEKYHCNERLEFLGDAVLELVSSEYLF 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EGEL+ S+V + + AR++DL S++ + SI +D +E Sbjct: 67 LESPKVSEGELTKTRASMVCEPSLAFCARDIDLGSYLLLGRGEEATGGRARDSITSDALE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI A+YLDGG A F+ ++ L+ K D+KT LQE A+ + Y++ Sbjct: 127 ALIGAIYLDGGFTNAKEFIHRFILT-DLEDKKLFFDSKTILQEIVQARMAGSISYRLIKE 185 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 GPDH+ F V V I G +K+AAEQ AA + L++E Sbjct: 186 EGPDHNKAFFVEVMIEENGYGIGKGRTKKAAEQEAAYKAILELRKE 231 >gi|225860919|ref|YP_002742428.1| ribonuclease III [Streptococcus pneumoniae Taiwan19F-14] gi|298229966|ref|ZP_06963647.1| ribonuclease III [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254343|ref|ZP_06977929.1| ribonuclease III [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502755|ref|YP_003724695.1| ribonuclease III [Streptococcus pneumoniae TCH8431/19A] gi|254807906|sp|C1CR56|RNC_STRZT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|225726586|gb|ACO22437.1| ribonuclease III [Streptococcus pneumoniae Taiwan19F-14] gi|298238350|gb|ADI69481.1| ribonuclease III [Streptococcus pneumoniae TCH8431/19A] gi|327389483|gb|EGE87828.1| ribonuclease III [Streptococcus pneumoniae GA04375] Length = 232 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 8/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ F +++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFTDKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+ + AL LD + F+ + + +++G+F D KT LQE V Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIR 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|85068686|gb|ABC54695.1| ribonuclease III [Ehrlichia sp. P-Mtn] Length = 228 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 88/219 (40%), Positives = 130/219 (59%), Gaps = 3/219 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63 + + + IGY+F N LL +ALTH S+S S +YERLEFLGD +L L+IS +LFN F Sbjct: 4 NNISEIIGYSFKNIQLLNEALTHPSVSSSKDNINFNYERLEFLGDAVLNLVISEMLFNIF 63 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ + +LV +VA+ ++L +FI +S R + +S + +E+LI Sbjct: 64 PKDTEGNLAKKKTALVCGTKLVEVAQFINLGTFIIMSDGERTCGGANNSSNLENALEALI 123 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG++ A F+ +WK A +DAKT LQEWA A+ + P Y + +SGP Sbjct: 124 GAIYLDGGLKAAKNFIFLFWKNSAKHMKVPPQDAKTILQEWAQAQGLLAPSYHIVNKSGP 183 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 DH+P FTV V ++ Q +K+ AEQ AA+ +L + Sbjct: 184 DHNPTFTVEVRMNSHETLQATGNNKKIAEQKAASLMLAK 222 >gi|146321055|ref|YP_001200766.1| dsRNA-specific ribonuclease [Streptococcus suis 98HAH33] gi|253751930|ref|YP_003025071.1| ribonuclease III [Streptococcus suis SC84] gi|253753753|ref|YP_003026894.1| ribonuclease III [Streptococcus suis P1/7] gi|253755369|ref|YP_003028509.1| ribonuclease III [Streptococcus suis BM407] gi|145691861|gb|ABP92366.1| dsRNA-specific ribonuclease [Streptococcus suis 98HAH33] gi|251816219|emb|CAZ51846.1| ribonuclease III [Streptococcus suis SC84] gi|251817833|emb|CAZ55586.1| ribonuclease III [Streptococcus suis BM407] gi|251819999|emb|CAR46159.1| ribonuclease III [Streptococcus suis P1/7] gi|292558506|gb|ADE31507.1| Ribonuclease III [Streptococcus suis GZ1] Length = 228 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 107/225 (47%), Gaps = 7/225 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 ++ L G F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS L+ Sbjct: 5 HAKLLADFGIDFSDLNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLMISKYLYQ 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGE+S ++ V E+ + +R F+R+ K +I D E+ Sbjct: 65 KYPDRPEGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILGDAFEA 124 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 + AL LD G + F+ K R L+ G F R D KT LQE + Y+V Sbjct: 125 FLGALLLDKGEKTVEEFIHKVMIPR-LEKGNFERVTDYKTALQEILQVNGEIAISYQVIA 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP HD F V V +G SK+ AEQ AA ++ G Sbjct: 184 ESGPAHDKTFEVEVSADQRVIGRGRGRSKKLAEQAAAKNAVEARG 228 >gi|240949696|ref|ZP_04754031.1| ribonuclease III [Actinobacillus minor NM305] gi|240295954|gb|EER46630.1| ribonuclease III [Actinobacillus minor NM305] Length = 223 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 6/222 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY F L +ALTH S + ++ ERLEFLGD IL I L++ F Sbjct: 1 MQLERLQKKLGYQFETLDYLTQALTHRSAA---SKNNERLEFLGDSILNFTIGKALYDKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ +L ++++ + K SI +D VE++I Sbjct: 58 PKADEGELSRMRAALVREQTLAVIARQFELGEYLKLGAGELKSGGFRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G+E A + +++ + G+ ++D KT LQE+ + PEY+V Sbjct: 118 AAIYLDKGMEPAMERIYAWYETFLAEITPGEAQKDPKTRLQEFLQGRKLPLPEYEVIDIK 177 Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKR 222 G H+ F V ++ G G S+R AEQ A +VL + Sbjct: 178 GEAHNQTFKVTCKVQGIEEIFTGQGTSRRKAEQNVAEKVLTQ 219 >gi|304398620|ref|ZP_07380492.1| ribonuclease III [Pantoea sp. aB] gi|304353831|gb|EFM18206.1| ribonuclease III [Pantoea sp. aB] Length = 226 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 115/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINKLQRKLGYTFTHSELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD GIE + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSGIERVEQLILDWYQSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG+ P G+ S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 210 >gi|307708796|ref|ZP_07645258.1| ribonuclease III [Streptococcus mitis NCTC 12261] gi|307615162|gb|EFN94373.1| ribonuclease III [Streptococcus mitis NCTC 12261] Length = 232 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 8/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+ + AL LD + F+ + + +++G+F D KT LQE V Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIR 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 179 YQVISETGPAHDKVFEVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|34558193|ref|NP_908008.1| ribonuclease III [Wolinella succinogenes DSM 1740] gi|81653364|sp|Q7M840|RNC_WOLSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|34483912|emb|CAE10908.1| RIBONUCLEASE III [Wolinella succinogenes] Length = 238 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 83/220 (37%), Positives = 116/220 (52%), Gaps = 4/220 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 EKR+GY F N++LL +ALTH S Y + ERLEFLGD +L L+I LF F Sbjct: 2 ESIEEFEKRLGYRFQNKNLLIEALTHKSYKKPY--NNERLEFLGDAVLDLVIGEFLFLKF 59 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS SLV+ + +++A + L I +S+ + S+ ++ E+ + Sbjct: 60 PKADEGELSKMRASLVNEKGFAKLAERVSLGRHIFISNAEENNKGREKPSLLSNAFEATM 119 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YL+ G+ V V + + + G RD KT LQE AKFG TPEY + S Sbjct: 120 GAIYLETGLSVVREVVHRLLDEVYPKIDLGSLFRDYKTALQELTQAKFGETPEYVILGSS 179 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDH F V V + G A+ SK+ A+Q AA L+ Sbjct: 180 GPDHKKEFEVAVCVLGSEYARACGSSKKEAQQEAARIALE 219 >gi|154686009|ref|YP_001421170.1| ribonuclease III [Bacillus amyloliquefaciens FZB42] gi|189043290|sp|A7Z4L3|RNC_BACA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|154351860|gb|ABS73939.1| Rnc [Bacillus amyloliquefaciens FZB42] Length = 249 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 107/225 (47%), Gaps = 5/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS L Sbjct: 18 EQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F + + EG+L+ ++V + +A EL + + ++ ADV Sbjct: 78 FAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVF 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+ I ALYLD G++ F+ Y + D K++LQE+ + EYK+ Sbjct: 138 EAFIGALYLDQGLDPVQQFLKVYVFPKINDGAFSHVMDFKSQLQEFVQRDGKGSLEYKIL 197 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F +V + G A G SK+ AEQ AA E L + Sbjct: 198 NEKGPAHNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALAKM 242 >gi|254797243|ref|YP_003082085.1| ribonuclease III [Neorickettsia risticii str. Illinois] gi|254590493|gb|ACT69855.1| ribonuclease III [Neorickettsia risticii str. Illinois] Length = 222 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 119/220 (54%), Gaps = 3/220 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L+ +G F N+ LL +ALTH S+ SYERLEFLGD +L L+++++L++ F Sbjct: 1 MELEELQSLLGVHFKNKELLVEALTHPSV--EKCPSYERLEFLGDAVLNLVVASMLYDLF 58 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS R + LV + +AR+++L IR+SS T+ +V+E+LI Sbjct: 59 PGDPEGRLSQRQSVLVCKTALAMLARQMNLGDCIRLSSSEEASGGRDKTNNLENVLEALI 118 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++LD G E F+ K+W + A++S + K+ LQE AK P Y V RSGP Sbjct: 119 GAIFLDAGFETVTCFIQKHWYELAVQSDSIEPNPKSALQELLQAKGMKPPVYNVIDRSGP 178 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H P F V + + G + SK+ E+ AA +L+ Sbjct: 179 AHLPIFEVEICVDGKKR-RATGRSKKLGEENAARMMLEEL 217 >gi|58698421|ref|ZP_00373332.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae] gi|58535076|gb|EAL59164.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae] Length = 232 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56 M +L + K I Y F N ++LE+ALTH S++ ++ YERLEFLGD +L +++S Sbjct: 1 MKSLN-DAISKIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F KEG L+ R LV T + VA+E+ L SFI +++ R + Sbjct: 60 ATLFKLFPEEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCNGGRCNLKNLE 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + +E+LI A+Y+DGG+E F+ +YW++ A +D KT LQEW PEY+ Sbjct: 120 NSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQKNKLPLPEYE 179 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + ++GP H+P FT+ V I SK+ AEQ AA +L++ Sbjct: 180 LVKQTGPAHNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEK 225 >gi|33152642|ref|NP_873995.1| ribonuclease III [Haemophilus ducreyi 35000HP] gi|73917578|sp|Q7VL75|RNC_HAEDU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|33148866|gb|AAP96384.1| ribonuclease III [Haemophilus ducreyi 35000HP] Length = 222 Score = 258 bits (661), Expect = 4e-67, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 121/224 (54%), Gaps = 6/224 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L+K+IGY FAN L +ALTH S + ++ ERLEFLGD IL I LF F Sbjct: 1 MYIERLQKKIGYQFANLDYLLQALTHRSAA---AKNNERLEFLGDSILNYAIGQALFERF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ DL ++++ + K SI +D VE++I Sbjct: 58 PQANEGELSRMRATLVREQTLAILARQFDLGEYMKLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G++ A + +++ +K G ++D KT LQE+ + PEY+V Sbjct: 118 AAIYLDAGMDKASERIYAWYQTLLDEMKPGDAQKDPKTRLQEFLQGRRLKLPEYEVLDIK 177 Query: 182 GPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREG 224 G H+ F V +I G+ S+R AEQ AA ++L + Sbjct: 178 GEAHNQIFKVSCKIETFTDIFIGIGTSRRKAEQNAAEQILLKLN 221 >gi|319774962|ref|YP_004137450.1| Ribonuclease III [Haemophilus influenzae F3047] gi|329123136|ref|ZP_08251706.1| ribonuclease III [Haemophilus aegyptius ATCC 11116] gi|317449553|emb|CBY85758.1| Ribonuclease III [Haemophilus influenzae F3047] gi|327471691|gb|EGF17133.1| ribonuclease III [Haemophilus aegyptius ATCC 11116] Length = 227 Score = 258 bits (661), Expect = 4e-67, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 118/226 (52%), Gaps = 9/226 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE++IGY F + LL++ALTH S + + ERLEFLGD IL I+ L++ F Sbjct: 4 LDRLERKIGYCFNDIVLLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALYHQFPR 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS +LV T + +AR+ +L ++ + S K+ SI AD VE++I A Sbjct: 61 CNEGELSRMRATLVRESTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGA 120 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + LD G+ V + +++Q +K G ++DAKT LQE+ K P Y+V G Sbjct: 121 MSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVINIQGE 180 Query: 184 DHDPRFTVVVEIS--GL--APAQGMDCSKRAAEQVAAAEVLKREGI 225 H FTV ++ G S+R AEQ AA ++LK I Sbjct: 181 AHCQIFTVKCKVKSAGKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226 >gi|332653520|ref|ZP_08419265.1| ribonuclease III [Ruminococcaceae bacterium D16] gi|332518666|gb|EGJ48269.1| ribonuclease III [Ruminococcaceae bacterium D16] Length = 226 Score = 258 bits (661), Expect = 4e-67, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 119/206 (57%), Gaps = 3/206 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 +TLE+++GY F NR LLE ALTHSS ++ + +S ERLEFLGD ILG++++ L+ Sbjct: 2 TTLEEKLGYQFQNRELLENALTHSSCANESRGKLQSNERLEFLGDSILGMVVADHLYRGH 61 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EGEL+ +LV E+ +VA+ LDL S++ + SIQAD VE+++ Sbjct: 62 PDLPEGELTRVRAALVCEESLVEVAQALDLGSYLLLGKGEEAGGGRTRPSIQADAVEAVL 121 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AA+YLDGGI A + KY R ++ RD KT LQE + G +Y++ GP Sbjct: 122 AAVYLDGGIGSARKIIQKYILCREIEGITSPRDYKTALQELVQRESGQVLKYRLVGSQGP 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 DH RF V V+++G G SK+ Sbjct: 182 DHAKRFFVDVDLNGEPVGSGEGHSKK 207 >gi|311898536|dbj|BAJ30944.1| putative ribonuclease 3 [Kitasatospora setae KM-6054] Length = 269 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 ++ Y LE R+GY+ R+LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 24 ASTEYDVLEGRLGYSLE-RALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 82 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG L+ ++V++ ++V R LDL +FIR+ +SI AD V Sbjct: 83 YRLHPEVAEGTLAKLRAAVVNSRALAEVGRGLDLGAFIRLGKGEEGTGGRDKSSILADTV 142 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A YLD G++ A FV + + +S + D KT LQE A PEY V Sbjct: 143 EAVIGATYLDQGLDAATEFVHRLFDPLIAESAQLGAGLDWKTSLQELTAAVGLGVPEYVV 202 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T SGPDH+ FT ++G G SK+ AEQ AA + Sbjct: 203 T-ESGPDHEKTFTAAARVAGQDHGSGSGRSKKEAEQKAAESAWR 245 >gi|157960865|ref|YP_001500899.1| ribonuclease III [Shewanella pealeana ATCC 700345] gi|189043351|sp|A8H1C7|RNC_SHEPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157845865|gb|ABV86364.1| Ribonuclease III [Shewanella pealeana ATCC 700345] Length = 225 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 6/224 (2%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M ++ L + +GY F ++ L++ALTH S S+ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNIPRLCRTLGYEFNEKAFLDQALTHRSASNKH---NERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F +A EG+LS +LV + +++A E L ++++ K SI AD V Sbjct: 58 YHQFPAATEGDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLD IE V +++ R + ++D KT LQE+ P Y+V Sbjct: 118 EAIIGAIYLDSDIENCRQLVLNWYESRLKVIEPINQKDPKTLLQEYLQKYRKPLPVYRVA 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 G H+ FTV + L+ A G+ S+R AEQ AAA+VL+ Sbjct: 178 HTEGDAHEQTFTVECIVEDLSQAVVGVASSRRKAEQSAAAQVLE 221 >gi|94502127|ref|ZP_01308628.1| ribonuclease III [Oceanobacter sp. RED65] gi|94425729|gb|EAT10736.1| ribonuclease III [Oceanobacter sp. RED65] Length = 226 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 116/223 (52%), Gaps = 6/223 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +RIGY F + S E ALTH S ++ ERLEFLGD I+ +++ LF F AK Sbjct: 7 KLSQRIGYTFNDISFFELALTHRS---KGGKNNERLEFLGDSIVNFVVAEALFEKFPQAK 63 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS LV T +++AR+ DL F+ + S K SI AD VE++I A+Y Sbjct: 64 EGKLSRLRAGLVRGTTLAELARDFDLGEFLLLGSGELKSGGFNRESILADAVEAIIGAIY 123 Query: 128 LDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD G++ + ++ +R L+ +DAKT LQE P+Y+V +G H Sbjct: 124 LDSGLDTVRERILTWYGKRLDDLQLDDVVKDAKTRLQEHLQKNQSRLPKYEVMEITGQAH 183 Query: 186 DPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGIWT 227 D F V + L G+ S+R AEQ AA + L G+ + Sbjct: 184 DQNFKVSCWVETLPEVTIGLGSSRRLAEQSAAQKALNALGVES 226 >gi|257870561|ref|ZP_05650214.1| ribonuclease III [Enterococcus gallinarum EG2] gi|257804725|gb|EEV33547.1| ribonuclease III [Enterococcus gallinarum EG2] Length = 230 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 5/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M+ + L++ G F + LLE+A THSS + ++ ERLEFLGD +L L++S Sbjct: 1 MNTQLMNELKEDYGIVFHDVDLLEQAFTHSSYVNEHRNLHLSDNERLEFLGDAVLELIVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ EG+L+ ++V ++ S A++ +IR+ S+ Sbjct: 61 RYLYRELPDLPEGKLTKLRAAIVREDSLSMFAKDCRFDQYIRLGKGEENSGGRKRPSLLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD G+E F+ + D KT LQE V+ Y Sbjct: 121 DLFEAFLGALYLDQGLESVDGFLTAVVFPKVKAGAFSHEMDHKTRLQEVLQRSGDVSINY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 ++T GP H+ F V + +G SK+ +EQ AA L Sbjct: 181 RLTKEEGPAHERIFWTEVYCDDVLIGEGQGKSKKLSEQAAAENAL 225 >gi|242309254|ref|ZP_04808409.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489] gi|239524295|gb|EEQ64161.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489] Length = 224 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 4/220 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + ++ ++ +GY F N++LL++ALTH S S ERLEFLGD +L L+I L+ F Sbjct: 1 MDFNHFQQTLGYHFKNQNLLKEALTHKSAKKST--HNERLEFLGDAVLDLIIGEFLYKKF 58 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S+ EGELS S+V+ + +++AR L + ++ +S ++ SI ++ E++I Sbjct: 59 PSSPEGELSKMRASMVNEKAFAKIARYLGIGEYLFISHSEEQNHGRDKDSILSNAFEAII 118 Query: 124 AALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YL+ G+E V K + + D KT LQE A FGV PEY V Sbjct: 119 GAIYLESGLEKVQKIVLKILEILYPKIDIQHLFYDHKTSLQELTQALFGVIPEYVVLDSK 178 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDH+ F + V I G A SK+ A+Q A L+ Sbjct: 179 GPDHNKEFLIGVFIQGKEYAHASGKSKKEAQQNCAKIALE 218 >gi|168493169|ref|ZP_02717312.1| ribonuclease III [Streptococcus pneumoniae CDC3059-06] gi|183576640|gb|EDT97168.1| ribonuclease III [Streptococcus pneumoniae CDC3059-06] Length = 232 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 8/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ F +++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFTDKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+ + AL LD + F+ + + +++G+F D KT LQE V Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTYLQELLQVNGDVAIR 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|259907677|ref|YP_002648033.1| ribonuclease III [Erwinia pyrifoliae Ep1/96] gi|224963299|emb|CAX54784.1| Ribonuclease III [Erwinia pyrifoliae Ep1/96] gi|283477528|emb|CAY73444.1| RNase III, ds RNA [Erwinia pyrifoliae DSM 12163] gi|310764815|gb|ADP09765.1| ribonuclease III [Erwinia sp. Ejp617] Length = 226 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINKLQRKLGYTFTHQELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEQLILSWYASRLDQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210 G HD FT+ ++SG+A P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGMADPVVGTGSSRRK 210 >gi|260598950|ref|YP_003211521.1| ribonuclease III [Cronobacter turicensis z3032] gi|260218127|emb|CBA32925.1| Ribonuclease 3 [Cronobacter turicensis z3032] Length = 236 Score = 258 bits (660), Expect = 5e-67, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 11 MNPIVINRLQRKLGYTFHHQDLLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 67 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 68 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 127 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 128 ALIGGIFLDSDIQTVERLILTWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 187 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 188 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 220 >gi|308173556|ref|YP_003920261.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7] gi|307606420|emb|CBI42791.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7] gi|328553511|gb|AEB24003.1| ribonuclease III [Bacillus amyloliquefaciens TA208] gi|328911697|gb|AEB63293.1| ribonuclease III [Bacillus amyloliquefaciens LL3] Length = 249 Score = 258 bits (660), Expect = 5e-67, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 107/225 (47%), Gaps = 5/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS L Sbjct: 18 EQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F + + EG+L+ ++V + +A EL + + ++ ADV Sbjct: 78 FAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVF 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+ I ALYLD G+E F+ Y + D K++LQE+ + EYK+ Sbjct: 138 EAFIGALYLDQGLEPVQQFLKVYVFPKINDGAFSHVMDFKSQLQEFVQRDGKGSLEYKIL 197 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F +V + G A G SK+ AEQ AA E L + Sbjct: 198 NEKGPAHNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALAKL 242 >gi|72161055|ref|YP_288712.1| ribonuclease III [Thermobifida fusca YX] gi|90101652|sp|Q47S78|RNC_THEFY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71914787|gb|AAZ54689.1| RNAse III [Thermobifida fusca YX] Length = 240 Score = 258 bits (660), Expect = 5e-67, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 111/225 (49%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 +S ++ +G A +L +ALTH S ++ + ERLEFLGD +LGL+++ Sbjct: 5 LSPAEVREFQETVGVEIA-PDILTRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDT 63 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ EG+L+ ++V+ + VAREL + ++R+ +SI AD Sbjct: 64 LYRTHPDLSEGQLAKLRAAVVNMRALADVARELGIGRYVRLGRGEEATGGRDKSSILADT 123 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYK 176 +E+LI A+YLD G++ A V + + ++ D KT LQE A+ PEY Sbjct: 124 LEALIGAVYLDRGLDEASELVHRLFDPLIARASGLGAGLDWKTSLQELTAAELLGVPEY- 182 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V SGPDH F V ++G G SK+ AEQ AA K Sbjct: 183 VVEESGPDHQKTFRATVRVAGQTYGSGEGRSKKEAEQQAAESAWK 227 >gi|117924215|ref|YP_864832.1| ribonuclease III [Magnetococcus sp. MC-1] gi|189043326|sp|A0L633|RNC_MAGSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|117607971|gb|ABK43426.1| RNAse III [Magnetococcus sp. MC-1] Length = 246 Score = 258 bits (660), Expect = 5e-67, Method: Composition-based stats. Identities = 79/235 (33%), Positives = 115/235 (48%), Gaps = 14/235 (5%) Query: 1 MSALR----YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--------SYERLEFLGD 48 M+A R LE+ + Y F LL+ ALTH S + ERLEFLGD Sbjct: 1 MNAQREPSGLERLEQALDYRFTQSDLLQLALTHRSAPLDGSKAGEVVATTHNERLEFLGD 60 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 +L L++S L+ F EG+LS LV+ + S+VA++L+L ++R+ K Sbjct: 61 SVLNLIVSHRLYKRFGEVPEGQLSQWRAMLVNTRSLSEVAKDLELGRYLRMGRGEAKSGG 120 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAH 166 SI + +E+L+ A+YLDGG E A VD+ + + ++ + +D KT LQE+ Sbjct: 121 REKYSILGNALEALLGAIYLDGGFEAAERVVDRLFAHQVAGIEPEQQGKDYKTLLQEYLQ 180 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 A+ P Y V GP H+ F V G SKR AEQ AA + L+ Sbjct: 181 ARGEALPIYAVLSAEGPPHERVFVVSCHPREQLCGHGQGRSKREAEQHAAQQALE 235 >gi|148993857|ref|ZP_01823259.1| ribonuclease III [Streptococcus pneumoniae SP9-BS68] gi|149007089|ref|ZP_01830758.1| ribonuclease III [Streptococcus pneumoniae SP18-BS74] gi|149012300|ref|ZP_01833369.1| ribonuclease III [Streptococcus pneumoniae SP19-BS75] gi|149019239|ref|ZP_01834601.1| ribonuclease III [Streptococcus pneumoniae SP23-BS72] gi|168486568|ref|ZP_02711076.1| ribonuclease III [Streptococcus pneumoniae CDC1087-00] gi|168489075|ref|ZP_02713274.1| ribonuclease III [Streptococcus pneumoniae SP195] gi|182684025|ref|YP_001835772.1| ribonuclease III [Streptococcus pneumoniae CGSP14] gi|225854713|ref|YP_002736225.1| ribonuclease III [Streptococcus pneumoniae JJA] gi|225859042|ref|YP_002740552.1| ribonuclease III [Streptococcus pneumoniae 70585] gi|303254257|ref|ZP_07340366.1| ribonuclease III [Streptococcus pneumoniae BS455] gi|303258883|ref|ZP_07344862.1| ribonuclease III [Streptococcus pneumoniae SP-BS293] gi|303261566|ref|ZP_07347513.1| ribonuclease III [Streptococcus pneumoniae SP14-BS292] gi|303264237|ref|ZP_07350157.1| ribonuclease III [Streptococcus pneumoniae BS397] gi|303266132|ref|ZP_07352025.1| ribonuclease III [Streptococcus pneumoniae BS457] gi|303268141|ref|ZP_07353941.1| ribonuclease III [Streptococcus pneumoniae BS458] gi|307127162|ref|YP_003879193.1| ribonuclease III [Streptococcus pneumoniae 670-6B] gi|238691158|sp|B2IPN5|RNC_STRPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807901|sp|C1C7M6|RNC_STRP7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807904|sp|C1CEK4|RNC_STRZJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|147761393|gb|EDK68359.1| ribonuclease III [Streptococcus pneumoniae SP18-BS74] gi|147763626|gb|EDK70561.1| ribonuclease III [Streptococcus pneumoniae SP19-BS75] gi|147927682|gb|EDK78707.1| ribonuclease III [Streptococcus pneumoniae SP9-BS68] gi|147931109|gb|EDK82088.1| ribonuclease III [Streptococcus pneumoniae SP23-BS72] gi|182629359|gb|ACB90307.1| ribonuclease III [Streptococcus pneumoniae CGSP14] gi|183570477|gb|EDT91005.1| ribonuclease III [Streptococcus pneumoniae CDC1087-00] gi|183572564|gb|EDT93092.1| ribonuclease III [Streptococcus pneumoniae SP195] gi|225722013|gb|ACO17867.1| ribonuclease III [Streptococcus pneumoniae 70585] gi|225722854|gb|ACO18707.1| ribonuclease III [Streptococcus pneumoniae JJA] gi|301801897|emb|CBW34621.1| ribonuclease III [Streptococcus pneumoniae INV200] gi|302598751|gb|EFL65788.1| ribonuclease III [Streptococcus pneumoniae BS455] gi|302637146|gb|EFL67634.1| ribonuclease III [Streptococcus pneumoniae SP14-BS292] gi|302639826|gb|EFL70282.1| ribonuclease III [Streptococcus pneumoniae SP-BS293] gi|302642358|gb|EFL72705.1| ribonuclease III [Streptococcus pneumoniae BS458] gi|302644302|gb|EFL74556.1| ribonuclease III [Streptococcus pneumoniae BS457] gi|302646049|gb|EFL76276.1| ribonuclease III [Streptococcus pneumoniae BS397] gi|306484224|gb|ADM91093.1| ribonuclease III [Streptococcus pneumoniae 670-6B] gi|332073586|gb|EGI84065.1| ribonuclease III [Streptococcus pneumoniae GA17570] gi|332074581|gb|EGI85055.1| ribonuclease III [Streptococcus pneumoniae GA17545] Length = 232 Score = 258 bits (660), Expect = 5e-67, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 8/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ F ++ LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFTDKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+ + AL LD + F+ + + +++G+F D KT LQE V Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIR 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|212636523|ref|YP_002313048.1| ribonuclease III [Shewanella piezotolerans WP3] gi|226735379|sp|B8CQJ5|RNC_SHEPW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|212558007|gb|ACJ30461.1| Ribonuclease III [Shewanella piezotolerans WP3] Length = 225 Score = 258 bits (660), Expect = 5e-67, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M ++ L + +GY FA ++LL++ALTH S S+ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNIPRLCRTLGYEFAEQALLDQALTHRSASNKH---NERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV + +++A E L ++++ K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLD IE V ++ R + ++D KT LQE P YKV Sbjct: 118 EAIIGAIYLDSDIEKCRKLVLNWYASRLRVIEPINQKDPKTLLQEHLQKFRKPLPIYKVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 G H+ FTV + L A G+ S+R AEQ AAA+VL+ Sbjct: 178 HTEGDAHEQTFTVECVVEDLRQAVVGVASSRRKAEQSAAAQVLE 221 >gi|116748321|ref|YP_845008.1| ribonuclease III [Syntrophobacter fumaroxidans MPOB] gi|189043370|sp|A0LGM1|RNC_SYNFM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116697385|gb|ABK16573.1| RNAse III [Syntrophobacter fumaroxidans MPOB] Length = 242 Score = 258 bits (660), Expect = 5e-67, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 117/226 (51%), Gaps = 10/226 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61 L+ +GY F + LL +AL H S H ++ E LEFLGD +LGL IS L Sbjct: 7 LEALQNLLGYRFGDEGLLHRALVHRSYLHENPHLDEKDNETLEFLGDAVLGLAISHFLLE 66 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EGELS +++V+ +++A EL+L ++ + S+ AD +E+ Sbjct: 67 QFPDYNEGELSRLRSAIVNERELTRIAVELNLGEYLLLGKGEEMTGGRRKASLLADSLEA 126 Query: 122 LIAALYLDGGIEVAGTFVDKY------WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 L+A++YLDGG++ + K +++R +D KT+LQE A++ +TP Y Sbjct: 127 LLASIYLDGGLDAVLGVIKKLFDVYLRFEKREHVLKALDKDYKTQLQELTQARYKLTPVY 186 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + GPDHD F + V + G A G SK+ A+Q AA + L+ Sbjct: 187 VLDREEGPDHDKTFHMNVVLEGQVLAGGSGKSKKDAQQAAAEKALQ 232 >gi|329297705|ref|ZP_08255041.1| ribonuclease III [Plautia stali symbiont] Length = 226 Score = 258 bits (660), Expect = 5e-67, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 115/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINKLQRKLGYTFTHPELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ S K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFELGECLRLGSGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSNIQTVEKLILDWYQNRLEQISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG+ P G+ S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 210 >gi|303251584|ref|ZP_07337758.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649582|gb|EFL79764.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 223 Score = 258 bits (660), Expect = 5e-67, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF F Sbjct: 1 MQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ L ++++ + K SI +D VE++I Sbjct: 58 PKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 118 AAIYLDAGMDKAIAQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDIK 177 Query: 182 GPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 178 GEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 220 >gi|303252175|ref|ZP_07338343.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648958|gb|EFL79146.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 223 Score = 258 bits (660), Expect = 5e-67, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF F Sbjct: 1 MQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ L ++++ + K SI +D VE++I Sbjct: 58 PKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 118 AAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDIK 177 Query: 182 GPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 178 GEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 220 >gi|322376803|ref|ZP_08051296.1| ribonuclease III [Streptococcus sp. M334] gi|321282610|gb|EFX59617.1| ribonuclease III [Streptococcus sp. M334] Length = 232 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 8/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+ + AL LD + F+ + + +++G+F D KT LQE V Sbjct: 120 DAFEAFLGALLLDKDVAKVKKFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIR 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|311068114|ref|YP_003973037.1| ribonuclease III [Bacillus atrophaeus 1942] gi|310868631|gb|ADP32106.1| ribonuclease III [Bacillus atrophaeus 1942] Length = 249 Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 108/225 (48%), Gaps = 5/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS L Sbjct: 18 EQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F + + EG+L+ ++V + +A EL + + ++ ADV Sbjct: 78 FAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVF 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+ I ALYLD G+E +F+ Y + D K++LQE+ T EYK+ Sbjct: 138 EAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFKSQLQEFVQRDGKGTLEYKIQ 197 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F +V + G A G SK+ AEQ AA E L + Sbjct: 198 NEKGPAHNREFEAIVSLKGEALGIGNGRSKKEAEQHAAQEALAKL 242 >gi|169833544|ref|YP_001694678.1| ribonuclease III [Streptococcus pneumoniae Hungary19A-6] gi|221231942|ref|YP_002511094.1| ribonuclease III [Streptococcus pneumoniae ATCC 700669] gi|307706718|ref|ZP_07643523.1| ribonuclease III [Streptococcus mitis SK321] gi|307709493|ref|ZP_07645950.1| ribonuclease III [Streptococcus mitis SK564] gi|238688328|sp|B1IC43|RNC_STRPI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807902|sp|B8ZJR8|RNC_STRPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|168996046|gb|ACA36658.1| ribonuclease III [Streptococcus pneumoniae Hungary19A-6] gi|220674402|emb|CAR68952.1| ribonuclease III [Streptococcus pneumoniae ATCC 700669] gi|301794330|emb|CBW36755.1| ribonuclease III [Streptococcus pneumoniae INV104] gi|301800168|emb|CBW32773.1| ribonuclease III [Streptococcus pneumoniae OXC141] gi|307617803|gb|EFN96965.1| ribonuclease III [Streptococcus mitis SK321] gi|307619807|gb|EFN98926.1| ribonuclease III [Streptococcus mitis SK564] gi|332203096|gb|EGJ17164.1| ribonuclease III [Streptococcus pneumoniae GA47901] Length = 232 Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 8/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+ + AL LD + F+ + + +++G+F D KT LQE V Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIR 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|90101637|sp|Q3IDL2|RNC_PSEHT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 225 Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats. Identities = 78/219 (35%), Positives = 116/219 (52%), Gaps = 5/219 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L K I Y FA++ LLE+A+TH S + ERLEFLGD IL +I+ L+ F Sbjct: 4 NVTELYKTIDYIFADQGLLEQAMTHRS---HKGQHNERLEFLGDSILSFVIANALYAKFP 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A+EG+LS ++LV +T ++ E L ++R+ K S AD VE++I Sbjct: 61 KAREGDLSRMRSTLVRGQTLAEFGLEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++LD IE G + ++++R A+ G ++D KT LQE A+ P Y V G Sbjct: 121 AVFLDSDIERCGELILSWYEERLNAISPGLNQKDPKTLLQEHLQARKLSLPGYTVVDTKG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H+ FTV + G+ + S+R AEQ AA + LK Sbjct: 181 QAHNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALK 219 >gi|194014593|ref|ZP_03053210.1| ribonuclease III [Bacillus pumilus ATCC 7061] gi|194013619|gb|EDW23184.1| ribonuclease III [Bacillus pumilus ATCC 7061] Length = 247 Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 104/225 (46%), Gaps = 5/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS L Sbjct: 16 EQFREFQQRISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFL 75 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F + + EG+L+ ++V + +A EL + + ++ ADV Sbjct: 76 FAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVF 135 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+ I ALYLD G+E F++ Y + D K++LQE+ EY + Sbjct: 136 EAFIGALYLDQGLEPVERFLEAYVYPKINDGAFSHVMDFKSQLQEFVQRDGKGVLEYHIL 195 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F V + G G SK+ AEQ AA E L + Sbjct: 196 HEKGPAHNREFEANVSLRGEVLGIGNGRSKKEAEQHAAQEALAKL 240 >gi|225870877|ref|YP_002746824.1| ribonuclease III [Streptococcus equi subsp. equi 4047] gi|254807900|sp|C0M8Y3|RNC_STRE4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|225700281|emb|CAW94534.1| ribonuclease III [Streptococcus equi subsp. equi 4047] Length = 230 Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 116/229 (50%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L + LE F ++ LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MKKLE-ALLENSFNIRFDDKRLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG++S +++V E+ + +R ++I++ K +I Sbjct: 60 EYLFAKYPKQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGRGEEKSGGRHRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD GIE F+++ + ++ G F +D KT LQE AK V + Sbjct: 120 DLFEAFLGALLLDKGIEEVRRFLNQVMIPQ-VEQGTFEKVKDYKTCLQELLQAKGDVVID 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V +GP H +F V V + ++G SK+ AEQ AA L + Sbjct: 179 YQVISETGPAHAKQFEVAVLVGEDHLSKGTGRSKKLAEQDAAKNALAQL 227 >gi|254439178|ref|ZP_05052672.1| ribonuclease III [Octadecabacter antarcticus 307] gi|198254624|gb|EDY78938.1| ribonuclease III [Octadecabacter antarcticus 307] Length = 229 Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats. Identities = 91/217 (41%), Positives = 124/217 (57%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + RIG+ FA L +A+THSS+S ++ +RLEFLGDR+LGL++S L + Sbjct: 7 LREFQDRIGHTFAKPDQLIRAVTHSSMSSPNRDDNQRLEFLGDRVLGLVMSEALLQADVN 66 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EG L+ RFN+LV ETC+ VARE+DL + +++ ++ AD +E++IAA Sbjct: 67 APEGLLAPRFNALVRKETCADVAREIDLGAVLKLGRSEMLTGGRRKEALLADAMEAVIAA 126 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +Y+D G +VA V W R K RD KT LQEWA + P Y T RSGPDH Sbjct: 127 VYIDAGFDVARERVVALWGDRITNVEKDARDPKTALQEWAQGQGEPPPSYIETARSGPDH 186 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P FT+ V + G SKR AEQ AA +L+R Sbjct: 187 APIFTIEVRLQSGPTDIGQAPSKRQAEQAAAKSLLER 223 >gi|260775208|ref|ZP_05884106.1| ribonuclease III [Vibrio coralliilyticus ATCC BAA-450] gi|260608909|gb|EEX35071.1| ribonuclease III [Vibrio coralliilyticus ATCC BAA-450] Length = 225 Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats. Identities = 76/213 (35%), Positives = 117/213 (54%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ + LEK++GY F + L+ ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIAKLEKKLGYQFNDAELINLALTHRSA---HGKHNERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE +L +++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD IEV + ++KQR A++ G ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDIEVVRGIILSWYKQRLEAIQPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210 G H+ +FTV E++G+ P G S+R Sbjct: 177 NIKGEAHNQQFTVSCEVAGVGSPVIGKGTSRRK 209 >gi|262273710|ref|ZP_06051523.1| ribonuclease III [Grimontia hollisae CIP 101886] gi|262222125|gb|EEY73437.1| ribonuclease III [Grimontia hollisae CIP 101886] Length = 224 Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 115/207 (55%), Gaps = 6/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L++RIGY F + +LL ALTH S S ++ ERLEFLGD IL +++ L++ F + Sbjct: 6 NRLQRRIGYTFNDTTLLSLALTHRSASGNH---NERLEFLGDSILSFVVADDLYHRFPNV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE +L +++ K SI AD VE++I A+ Sbjct: 63 DEGDMSRMRATLVRGNTLAELGREFELGDVLQLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E V ++KQR ++ G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSSLETVRGIVLNWYKQRLETIQPGANQKDPKTRLQEFLQGRRKPLPAYNVTKVQGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210 H+ +FTV E++GL P G S+R Sbjct: 183 HNQQFTVECEVAGLDRPVVGKGSSRRK 209 >gi|291539668|emb|CBL12779.1| RNAse III [Roseburia intestinalis XB6B4] Length = 228 Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats. Identities = 69/209 (33%), Positives = 106/209 (50%), Gaps = 5/209 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + L+ RIGY F LL +ALTHSS ++ ERLEFLGD +L ++ S L+ Sbjct: 3 KLQELQNRIGYTFEKEGLLRQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSDFLY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ EG+L+ S+V T + RE+DL ++ + + SI +D +E Sbjct: 63 RNYPDLPEGDLTKLRASIVCEPTLALCTREMDLGDYLLLGKGENQTGGRKRKSILSDALE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 S+I A+YLDGG E A F+ K+ ++ K D+KT LQE + + Y++ Sbjct: 123 SVIGAIYLDGGFEPAKKFIHKFILT-DIEHKKLFYDSKTILQEVVQGNYKESLHYELISE 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDHD +F+V I G +K+ Sbjct: 182 EGPDHDKQFSVEARIGDKVIGSGTGHTKK 210 >gi|224418414|ref|ZP_03656420.1| ribonuclease III [Helicobacter canadensis MIT 98-5491] gi|253827732|ref|ZP_04870617.1| ribonuclease III [Helicobacter canadensis MIT 98-5491] gi|313141944|ref|ZP_07804137.1| ribonuclease III [Helicobacter canadensis MIT 98-5491] gi|253511138|gb|EES89797.1| ribonuclease III [Helicobacter canadensis MIT 98-5491] gi|313130975|gb|EFR48592.1| ribonuclease III [Helicobacter canadensis MIT 98-5491] Length = 224 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 4/220 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + ++ +GY F+N++LL++ALTH S S ERLEFLGD +L L+I L+ F Sbjct: 1 MDLKDFQQYLGYHFSNQNLLQEALTHKSAKKST--HNERLEFLGDAVLDLIIGEFLYKKF 58 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EGELS S+V+ + +++AR L++ ++ +S ++ SI ++ E+++ Sbjct: 59 PHSPEGELSKMRASMVNEKAFAKIARYLNIGEYLYISHSEEQNNGREKDSILSNAFEAIV 118 Query: 124 AALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YL+ G+E T V K + D KT LQE A FG+TPEY V Sbjct: 119 GAIYLESGLEKVQTIVLKILDILYPKIDLENLFYDYKTSLQELTQALFGITPEYVVLDSK 178 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDH+ F + V I AQ SK+ A+Q A LK Sbjct: 179 GPDHNKEFLMGVFIQNKEYAQAKGKSKKEAQQNCAKIALK 218 >gi|16765901|ref|NP_461516.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140810|ref|NP_804152.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412543|ref|YP_149618.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361478|ref|YP_002141114.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205353677|ref|YP_002227478.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857988|ref|YP_002244639.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|20141650|sp|Q56056|RNC_SALTY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|81360707|sp|Q5PIG5|RNC_SALPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741376|sp|B5QTU8|RNC_SALEP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741377|sp|B5RD49|RNC_SALG2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238689916|sp|B5BAT0|RNC_SALPK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|16421128|gb|AAL21475.1| RNase III, ds RNA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29136435|gb|AAO68001.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126800|gb|AAV76306.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092954|emb|CAR58384.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205273458|emb|CAR38435.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206709791|emb|CAR34143.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247776|emb|CBG25604.1| RNase III [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994707|gb|ACY89592.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159129|emb|CBW18643.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332989508|gb|AEF08491.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 226 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 114/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|313890255|ref|ZP_07823889.1| ribonuclease III [Streptococcus pseudoporcinus SPIN 20026] gi|313121360|gb|EFR44465.1| ribonuclease III [Streptococcus pseudoporcinus SPIN 20026] Length = 230 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 119/228 (52%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L++ F ++ LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MKKLK-ALLKETFNIVFNDQDLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + S EG+LS + +V E+ + +R ++I++ K +I Sbjct: 60 EYLFKKYPSKPEGDLSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD GIE F+++ + K + +D KT LQE AK V +Y Sbjct: 120 DLFEAFLGALLLDKGIEDVRLFLNQVMIPQVEKGNFEKVKDYKTSLQEVLQAKGDVQIDY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V SGP H +F V + ++ ++G+ SK+ AEQ AA + L+ Sbjct: 180 QVVKESGPAHAKQFEVAILVNQEIISRGIGKSKKIAEQNAAKKALEHL 227 >gi|110801795|ref|YP_699005.1| ribonuclease III [Clostridium perfringens SM101] gi|110682296|gb|ABG85666.1| ribonuclease III [Clostridium perfringens SM101] Length = 241 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 121/225 (53%), Gaps = 4/225 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + +EK IG F N+ +L ALTHSS ++ ++ + ERLEFLGD +L L ++ LFN Sbjct: 8 INLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKYLFN 67 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ EGEL+ +V + +V++ L L +IR+S TSIQAD +E+ Sbjct: 68 NYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADALEA 127 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +IAA+YLD GIEVA F+ + +K K+ + D KT LQE V Y + Sbjct: 128 VIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYNLVK 187 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H +F + I+ QG+ SK+ +EQ AA L+R G Sbjct: 188 HEGPPHRRKFFTDLLINNEVMGQGVGFSKKESEQNAAKAALQRLG 232 >gi|257093153|ref|YP_003166794.1| Ribonuclease III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045677|gb|ACV34865.1| Ribonuclease III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 223 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 118/221 (53%), Gaps = 6/221 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+ +GY F +R+LL+ ALTH S S + ERLEFLGD IL +I+ LF F + Sbjct: 4 SRLERGLGYTFRDRALLQTALTHRSYSSPH---NERLEFLGDAILNAVIARSLFERFPTL 60 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS LV + Q A L L F+R+ +K SI AD +E+L AL Sbjct: 61 PEGDLSRLRAQLVRQDGLHQQALALSLGDFLRLGEGEQKSGGQQRPSILADGLEALFGAL 120 Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LD G E AG +++ ++ + L G+ +DAKT LQE+ + P+Y +T G Sbjct: 121 WLDAGFEAAGEVINRLYESMLKQLIPGQGTKDAKTRLQEYLQGRRLALPQYALTGAEGEA 180 Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224 H FTV I L +G ++RAAEQ+AA L G Sbjct: 181 HAQHFTVTCVIDALRIRTEGSGSNRRAAEQIAAERALDTLG 221 >gi|312897519|ref|ZP_07756939.1| ribonuclease III [Megasphaera micronuciformis F0359] gi|310621371|gb|EFQ04911.1| ribonuclease III [Megasphaera micronuciformis F0359] Length = 238 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 110/234 (47%), Gaps = 10/234 (4%) Query: 1 MSALRYSTLE---KRIGY-AFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILG 52 M+ R L KR+ F + LL++ALTHSS ++ + ERLEFLGD +L Sbjct: 1 MNKARREQLRNFTKRLNIGPFTDWHLLDQALTHSSYTNEDKTHHSMHNERLEFLGDAVLD 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 +++ L+ + EG L+ S+VS E + V + ++R+ Sbjct: 61 MVVGEYLYRRYPDMPEGNLTKARASIVSEEPLACVCAGFHMGDYLRLGKGEALTGGRTRN 120 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFG 170 SI AD E+++ A+Y+D A F+ ++ + ++ G + +D KT QE Sbjct: 121 SIMADAFEAVVGAIYMDCSYSAARDFILTQLERYLQLVEKGIYGKDYKTYFQELLQRDGA 180 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +Y + GPDH+ F + V ++G G +K++AEQ AA L++ Sbjct: 181 QDIKYHLCHEEGPDHNKTFFMEVIVNGTTMGMGSGKTKKSAEQHAAYAALEKMN 234 >gi|160892686|ref|ZP_02073476.1| hypothetical protein CLOL250_00216 [Clostridium sp. L2-50] gi|156865727|gb|EDO59158.1| hypothetical protein CLOL250_00216 [Clostridium sp. L2-50] Length = 230 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 79/232 (34%), Positives = 122/232 (52%), Gaps = 10/232 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ R+ +E IGY F + LL ALTH S ++ + ESYER EFLGD IL ++S Sbjct: 1 MNTERFHNIEDIIGYTFRDLDLLVTALTHKSYANERKINKVESYERSEFLGDAILEFVVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ ++ EG+L+ SLV T SQ+++EL ++ +S SI Sbjct: 61 EYLYQNYPEYPEGKLTKLRASLVCEFTLSQISKELKFGHYVLLSKGEDLTGGRNRNSIMC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D+ E+++ A+YLDGG++ A FV ++ +++ DAK+ LQE A + Y Sbjct: 121 DLFEAVLGAIYLDGGLDEAKKFVHRFLLD-DVETHSLFYDAKSTLQELAQKEEKTL-TYA 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL----KREG 224 + GPDH+ + V I+G A G S++A+EQ AA L K++G Sbjct: 179 LLEEKGPDHNKSYVSEVCINGEHVATGEGASRKASEQTAAYNALLQIKKKQG 230 >gi|188533138|ref|YP_001906935.1| ribonuclease III [Erwinia tasmaniensis Et1/99] gi|238691985|sp|B2VI46|RNC_ERWT9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|188028180|emb|CAO96038.1| Ribonuclease III [Erwinia tasmaniensis Et1/99] Length = 226 Score = 257 bits (658), Expect = 8e-67, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 112/213 (52%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINKLQRKLGYTFTHQELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGYRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQAVEQLILSWYASRLDQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG+ P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGTGSSRRK 210 >gi|307704936|ref|ZP_07641827.1| ribonuclease III [Streptococcus mitis SK597] gi|307621550|gb|EFO00596.1| ribonuclease III [Streptococcus mitis SK597] Length = 232 Score = 257 bits (658), Expect = 8e-67, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 8/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+ + AL LD + F+ + + +++G+F D KT LQE V Sbjct: 120 DAFEAFLGALLLDKDVVKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIR 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|299536778|ref|ZP_07050086.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1] gi|298727790|gb|EFI68357.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1] Length = 254 Score = 257 bits (658), Expect = 8e-67, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 5/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 ++ L+ + F N++LL +A THSS + ++ ERLEFLGD +L L +S LF Sbjct: 22 QFELLQHELNITFINKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EGEL+ S+V + A EL F+ + ++ ADV E Sbjct: 82 EKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 S + ALYLD ++ +F+++ + + + D K++LQE Y++ Sbjct: 142 SFVGALYLDQDLQTVVSFLERVVFPKVEVGAFSHVMDFKSQLQEMVQQTNNGLLHYEIID 201 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H+ F V ++G G SK+ AEQ AA ++ Sbjct: 202 EKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAAQCAMR 243 >gi|320155320|ref|YP_004187699.1| ribonuclease III [Vibrio vulnificus MO6-24/O] gi|56749444|sp|Q7MHN8|RNC_VIBVY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|319930632|gb|ADV85496.1| ribonuclease III [Vibrio vulnificus MO6-24/O] Length = 225 Score = 257 bits (658), Expect = 8e-67, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 112/213 (52%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ L +++GY F + LL ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIEKLTRQLGYQFQDDELLNLALTHRSANSKH---NERLEFLGDSILSFVIADELY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE L ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD +EV V ++ R A+K G ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAVYLDSDLEVVRGIVLNWYASRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H+ FTV +I+G+ P G S+R Sbjct: 177 NIKGEAHNQEFTVECDIAGMDKPVVGRGTSRRK 209 >gi|283786183|ref|YP_003366048.1| Ribonuclease III [Citrobacter rodentium ICC168] gi|282949637|emb|CBG89256.1| Ribonuclease III [Citrobacter rodentium ICC168] Length = 226 Score = 257 bits (658), Expect = 8e-67, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 114/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFTHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGYRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|261416404|ref|YP_003250087.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372860|gb|ACX75605.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326232|gb|ADL25433.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85] Length = 270 Score = 257 bits (658), Expect = 8e-67, Method: Composition-based stats. Identities = 77/219 (35%), Positives = 120/219 (54%), Gaps = 6/219 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE ++GY F + LL AL H S Y + ERLEFLGD +L +L + L+ + Sbjct: 23 LEAKLGYRFRDPELLAHALVHRSFLVGKDVPYASNNERLEFLGDSVLNMLTTEFLYRTYP 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S EGELS R +++VS C+Q ++E DL+ ++++ K SI AD E+++ Sbjct: 83 SDPEGELSKRKSAIVSGHACAQSSKEWDLSEYVKIGKSEAKMGGRGKESILADAYEAVLG 142 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLDGG+E ++K+ R + S + K+EL E+ K +PEY + G Sbjct: 143 AVYLDGGLEEVRAILNKFHFPRVQEIISATDFVNYKSELLEFCQGKLRCSPEYVIVGEEG 202 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P+H FTV V ++G + A+G +K+ AEQ A+ L+ Sbjct: 203 PEHQKVFTVEVVVNGKSYARGQGPNKKKAEQEASRLSLE 241 >gi|317049180|ref|YP_004116828.1| ribonuclease III [Pantoea sp. At-9b] gi|316950797|gb|ADU70272.1| ribonuclease III [Pantoea sp. At-9b] Length = 226 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINKLQRKLGYTFTHPELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSNIQNVEKLILDWYQTRLEQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG+ P G+ S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 210 >gi|161761286|ref|YP_033345.2| ribonuclease III [Bartonella henselae str. Houston-1] Length = 246 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 117/226 (51%), Positives = 155/226 (68%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LEK G+ F ++ L+KALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 12 MKLPMIDQLEKLTGHYFKDKKKLKKALTHSSVQGSEQGNYERLEFLGDRVLGLLIAEMLY 71 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR NSLV+A+TC+ +A E++L I V +++ +T++ ADV+E Sbjct: 72 QLFPQASEGELSVRLNSLVNAQTCADIALEMELPVMIHVGFEMKNLKGRRLTNMYADVIE 131 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG+E F+ +YW+ RA + RRDAKT+LQEWAH + GV P Y+V R Sbjct: 132 ALIAVIYLDGGLESVRPFIQRYWQSRAKQMDAGRRDAKTQLQEWAHVQGGVQPHYRVVKR 191 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDP F V V I G A G SKR AE++AA ++L+REGIW Sbjct: 192 SGPDHDPVFMVEVSIPGFASEIGQGNSKRCAERMAAEKILRREGIW 237 >gi|77919004|ref|YP_356819.1| RNase III [Pelobacter carbinolicus DSM 2380] gi|90101632|sp|Q3A4Q8|RNC_PELCD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|77545087|gb|ABA88649.1| RNAse III [Pelobacter carbinolicus DSM 2380] Length = 232 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 + A + LE I Y F N++LL +ALTH S S+ + ERLEFLGD +LG+++S Sbjct: 2 LEAKSAALLEDTIDYVFDNQALLLEALTHKSFSNEQNDRTEPDNERLEFLGDAVLGVVVS 61 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +F F EGEL+ + +VS + + + + + L ++R+ + +S+ A Sbjct: 62 HYIFRTFPHLPEGELTRIRSEVVSEKGLTVIGKAICLGDYMRLGKGEERSGGRQKSSLLA 121 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPE 174 + +E+L+ A++ DGG + ++ + ++ K D KT LQE A+FG P+ Sbjct: 122 NTMEALLGAVFCDGGFDSVRRVIEALFIPHIQRAARRKTGVDYKTRLQERLQARFGDVPQ 181 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y + GP H ++V G QG SK++AEQ AA + L+ Sbjct: 182 YVLIHADGPPHQRSYSVEAHFRGSCIGQGQGRSKKSAEQAAAKQALE 228 >gi|27364934|ref|NP_760462.1| ribonuclease III [Vibrio vulnificus CMCP6] gi|31076872|sp|Q8DC76|RNC_VIBVU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|27361080|gb|AAO09989.1| ribonuclease III [Vibrio vulnificus CMCP6] Length = 225 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 112/213 (52%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ L +++GY F + LL ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIEKLTRQLGYQFQDDELLNLALTHRSANSKH---NERLEFLGDSILSFVIADELY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE L ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD +EV V ++ R A+K G ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAVYLDSDLEVVRGIVLNWYTSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H+ FTV +I+G+ P G S+R Sbjct: 177 NIKGEAHNQEFTVECDIAGMDKPVVGRGTSRRK 209 >gi|222475478|ref|YP_002563895.1| ribonuclease III (rnc) [Anaplasma marginale str. Florida] gi|254995287|ref|ZP_05277477.1| ribonuclease III [Anaplasma marginale str. Mississippi] gi|255003466|ref|ZP_05278430.1| ribonuclease III [Anaplasma marginale str. Puerto Rico] gi|254807234|sp|B9KGT5|RNC_ANAMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|222419616|gb|ACM49639.1| ribonuclease III (rnc) [Anaplasma marginale str. Florida] Length = 232 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 79/216 (36%), Positives = 114/216 (52%), Gaps = 1/216 (0%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 + + GY F + LL +ALTH S+S+ +YERLEFLGD +L + +S +L+ F Sbjct: 12 KIYEATGYQFRDLDLLLEALTHPSLSYKSAANYERLEFLGDAVLSMTVSEMLYRLFPDDD 71 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ + +LV ++AR + L I +S R S + +E+LI A+Y Sbjct: 72 EGCLTRKRTALVRGSEVVEIARSIGLGELILMSGGERTCGGSDNPGTLENALEALIGAMY 131 Query: 128 LDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +DGG E +F+ K+W RA +D KT LQEW + P YK+ +SGP+H Sbjct: 132 MDGGPEAYRSFIHKHWLARAQHMSYTPPQDPKTALQEWVQGRGWAMPLYKLVSKSGPEHK 191 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F V V I G SK+ AEQ AA +LK+ Sbjct: 192 PVFAVEVSIQEHGNVLGTGSSKKLAEQEAAKLMLKK 227 >gi|160947505|ref|ZP_02094672.1| hypothetical protein PEPMIC_01439 [Parvimonas micra ATCC 33270] gi|158446639|gb|EDP23634.1| hypothetical protein PEPMIC_01439 [Parvimonas micra ATCC 33270] Length = 237 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 110/225 (48%), Gaps = 6/225 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62 + L + +GY F + LL A H S + ++ S ERLEFLGD ILG ++S L+ Sbjct: 10 LNELMEVLGYKFKDLELLNLAFVHRSYLNECKDATISNERLEFLGDVILGFIVSVELYEQ 69 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F ++ EG L+ + +V E+ S AR +L ++ + SI AD E+L Sbjct: 70 FPNSDEGYLTKIRSKVVCEESFSYAARTFNLGKYLLLGKGEDSFGGRNRNSILADTFEAL 129 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ALYLDGG++V +KY+ + F +D K+ LQE+ H Y + Sbjct: 130 FGALYLDGGMDVVTEIANKYFFDTVVYKIDKNIFIKDYKSYLQEYFHKNATTKISYTLVA 189 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDHD F + V I + G +K+ AEQ AA + L + G Sbjct: 190 ERGPDHDKEFDMCVNIDDVVKGYGTGKNKKQAEQQAARDALIKSG 234 >gi|148256032|ref|YP_001240617.1| ribonuclease III [Bradyrhizobium sp. BTAi1] gi|146408205|gb|ABQ36711.1| RNAse III [Bradyrhizobium sp. BTAi1] Length = 368 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 99/217 (45%), Positives = 137/217 (63%), Gaps = 3/217 (1%) Query: 12 RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 RIG+ FA+ SLL A+TH S S +SY+RLEFLGD +LGL++S +L+ F SA E Sbjct: 145 RIGHHFADPSLLSTAVTHVSALKSSKKRGDSYQRLEFLGDHVLGLIVSDMLYRSFPSADE 204 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS R LV E+C+ VA+ L L I++ + S+ DV E++I A++L Sbjct: 205 GELSKRLADLVRKESCADVAKSLGLLDDIKLGAVGAGAGARLRKSVLGDVCEAVIGAIFL 264 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG A FV++ W +R K + RD KT LQEWA K TP Y+ R+GP HDP+ Sbjct: 265 DGGYAAAAGFVERNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQ 324 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 F V V++ GL A+G+ SKRAAE+VAA+ +++REG+ Sbjct: 325 FRVAVDLPGLESAEGVGGSKRAAEKVAASVMIEREGV 361 >gi|295097900|emb|CBK86990.1| RNAse III [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 226 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFHHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|15803093|ref|NP_289124.1| ribonuclease III [Escherichia coli O157:H7 EDL933] gi|15832687|ref|NP_311460.1| ribonuclease III [Escherichia coli O157:H7 str. Sakai] gi|16130492|ref|NP_417062.1| RNase III [Escherichia coli str. K-12 substr. MG1655] gi|24113909|ref|NP_708419.1| ribonuclease III [Shigella flexneri 2a str. 301] gi|26248932|ref|NP_754972.1| ribonuclease III [Escherichia coli CFT073] gi|30063969|ref|NP_838140.1| ribonuclease III [Shigella flexneri 2a str. 2457T] gi|74313129|ref|YP_311548.1| ribonuclease III [Shigella sonnei Ss046] gi|82545019|ref|YP_408966.1| ribonuclease III [Shigella boydii Sb227] gi|82777993|ref|YP_404342.1| ribonuclease III [Shigella dysenteriae Sd197] gi|89109373|ref|AP_003153.1| RNase III [Escherichia coli str. K-12 substr. W3110] gi|91211893|ref|YP_541879.1| ribonuclease III [Escherichia coli UTI89] gi|110642729|ref|YP_670459.1| ribonuclease III [Escherichia coli 536] gi|110806512|ref|YP_690032.1| ribonuclease III [Shigella flexneri 5 str. 8401] gi|117624788|ref|YP_853701.1| ribonuclease III [Escherichia coli APEC O1] gi|157157389|ref|YP_001463890.1| ribonuclease III [Escherichia coli E24377A] gi|157162046|ref|YP_001459364.1| ribonuclease III [Escherichia coli HS] gi|168748363|ref|ZP_02773385.1| ribonuclease III [Escherichia coli O157:H7 str. EC4113] gi|168761188|ref|ZP_02786195.1| ribonuclease III [Escherichia coli O157:H7 str. EC4501] gi|168778544|ref|ZP_02803551.1| ribonuclease III [Escherichia coli O157:H7 str. EC4076] gi|168787927|ref|ZP_02812934.1| ribonuclease III [Escherichia coli O157:H7 str. EC869] gi|170019150|ref|YP_001724104.1| ribonuclease III [Escherichia coli ATCC 8739] gi|170082176|ref|YP_001731496.1| RNase III [Escherichia coli str. K-12 substr. DH10B] gi|170680897|ref|YP_001744756.1| ribonuclease III [Escherichia coli SMS-3-5] gi|170767161|ref|ZP_02901614.1| ribonuclease III [Escherichia albertii TW07627] gi|187732795|ref|YP_001881346.1| ribonuclease III [Shigella boydii CDC 3083-94] gi|187775820|ref|ZP_02992726.1| ribonuclease III [Escherichia coli O157:H7 str. EC4196] gi|188492722|ref|ZP_02999992.1| ribonuclease III [Escherichia coli 53638] gi|189402493|ref|ZP_03006738.1| ribonuclease III [Escherichia coli O157:H7 str. EC4401] gi|189403151|ref|ZP_03006973.1| ribonuclease III [Escherichia coli O157:H7 str. EC4486] gi|189405744|ref|ZP_02823956.2| ribonuclease III [Escherichia coli O157:H7 str. EC508] gi|191167987|ref|ZP_03029789.1| ribonuclease III [Escherichia coli B7A] gi|191174016|ref|ZP_03035533.1| ribonuclease III [Escherichia coli F11] gi|193064102|ref|ZP_03045187.1| ribonuclease III [Escherichia coli E22] gi|193068346|ref|ZP_03049309.1| ribonuclease III [Escherichia coli E110019] gi|194429263|ref|ZP_03061790.1| ribonuclease III [Escherichia coli B171] gi|194432095|ref|ZP_03064384.1| ribonuclease III [Shigella dysenteriae 1012] gi|194437570|ref|ZP_03069666.1| ribonuclease III [Escherichia coli 101-1] gi|195936714|ref|ZP_03082096.1| ribonuclease III [Escherichia coli O157:H7 str. EC4024] gi|208807620|ref|ZP_03249957.1| ribonuclease III [Escherichia coli O157:H7 str. EC4206] gi|208811958|ref|ZP_03253287.1| ribonuclease III [Escherichia coli O157:H7 str. EC4045] gi|208820348|ref|ZP_03260668.1| ribonuclease III [Escherichia coli O157:H7 str. EC4042] gi|209400787|ref|YP_002272042.1| ribonuclease III [Escherichia coli O157:H7 str. EC4115] gi|209920046|ref|YP_002294130.1| ribonuclease III [Escherichia coli SE11] gi|215487911|ref|YP_002330342.1| ribonuclease III [Escherichia coli O127:H6 str. E2348/69] gi|217327524|ref|ZP_03443607.1| ribonuclease III [Escherichia coli O157:H7 str. TW14588] gi|218547905|ref|YP_002381696.1| ribonuclease III [Escherichia fergusonii ATCC 35469] gi|218555148|ref|YP_002388061.1| ribonuclease III [Escherichia coli IAI1] gi|218559488|ref|YP_002392401.1| ribonuclease III [Escherichia coli S88] gi|218690683|ref|YP_002398895.1| ribonuclease III [Escherichia coli ED1a] gi|218696195|ref|YP_002403862.1| ribonuclease III [Escherichia coli 55989] gi|218701081|ref|YP_002408710.1| ribonuclease III [Escherichia coli IAI39] gi|218706071|ref|YP_002413590.1| ribonuclease III [Escherichia coli UMN026] gi|237705077|ref|ZP_04535558.1| ribonuclease III [Escherichia sp. 3_2_53FAA] gi|238901732|ref|YP_002927528.1| RNase III [Escherichia coli BW2952] gi|253772534|ref|YP_003035365.1| ribonuclease III [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162542|ref|YP_003045650.1| ribonuclease III [Escherichia coli B str. REL606] gi|254794517|ref|YP_003079354.1| ribonuclease III [Escherichia coli O157:H7 str. TW14359] gi|256017284|ref|ZP_05431149.1| ribonuclease III [Shigella sp. D9] gi|256021747|ref|ZP_05435612.1| ribonuclease III [Escherichia sp. 4_1_40B] gi|260845252|ref|YP_003223030.1| RNase III [Escherichia coli O103:H2 str. 12009] gi|260856661|ref|YP_003230552.1| RNase III [Escherichia coli O26:H11 str. 11368] gi|260869254|ref|YP_003235656.1| RNase III [Escherichia coli O111:H- str. 11128] gi|261222997|ref|ZP_05937278.1| RNase III [Escherichia coli O157:H7 str. FRIK2000] gi|261259452|ref|ZP_05951985.1| RNase III [Escherichia coli O157:H7 str. FRIK966] gi|291283842|ref|YP_003500660.1| Ribonuclease 3 [Escherichia coli O55:H7 str. CB9615] gi|297516306|ref|ZP_06934692.1| ribonuclease III [Escherichia coli OP50] gi|307139203|ref|ZP_07498559.1| ribonuclease III [Escherichia coli H736] gi|307313862|ref|ZP_07593478.1| ribonuclease III [Escherichia coli W] gi|309784618|ref|ZP_07679253.1| ribonuclease III [Shigella dysenteriae 1617] gi|312965483|ref|ZP_07779715.1| ribonuclease III [Escherichia coli 2362-75] gi|312973187|ref|ZP_07787359.1| ribonuclease III [Escherichia coli 1827-70] gi|331643191|ref|ZP_08344326.1| ribonuclease III [Escherichia coli H736] gi|331648313|ref|ZP_08349402.1| ribonuclease III [Escherichia coli M605] gi|331654029|ref|ZP_08355030.1| ribonuclease III [Escherichia coli M718] gi|331658711|ref|ZP_08359655.1| ribonuclease III [Escherichia coli TA206] gi|331664135|ref|ZP_08365045.1| ribonuclease III [Escherichia coli TA143] gi|331669317|ref|ZP_08370165.1| ribonuclease III [Escherichia coli TA271] gi|331674016|ref|ZP_08374779.1| ribonuclease III [Escherichia coli TA280] gi|331678563|ref|ZP_08379238.1| ribonuclease III [Escherichia coli H591] gi|331684217|ref|ZP_08384813.1| ribonuclease III [Escherichia coli H299] gi|332278275|ref|ZP_08390688.1| ribonuclease III [Shigella sp. D9] gi|67472282|sp|P0A7Y0|RNC_ECOLI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|67472283|sp|P0A7Y1|RNC_ECOL6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|67472284|sp|P0A7Y2|RNC_ECO57 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|67472285|sp|P0A7Y3|RNC_SHIFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101643|sp|Q31XS0|RNC_SHIBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101644|sp|Q32CV4|RNC_SHIDS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101645|sp|Q3YYU9|RNC_SHISS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122422869|sp|Q1R8G6|RNC_ECOUT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122958122|sp|Q0TES1|RNC_ECOL5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|123048003|sp|Q0T1T8|RNC_SHIF8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043309|sp|A7ZQ11|RNC_ECO24 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043310|sp|A8A377|RNC_ECOHS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043311|sp|A1AE97|RNC_ECOK1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043312|sp|B1IVR0|RNC_ECOLC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735371|sp|B7MIQ2|RNC_ECO45 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735372|sp|B7NRM0|RNC_ECO7I RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735373|sp|B7M8I0|RNC_ECO8A RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735374|sp|B7N6F5|RNC_ECOLU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735375|sp|B1LP80|RNC_ECOSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735376|sp|B7LUZ7|RNC_ESCF3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741369|sp|B5Z141|RNC_ECO5E RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741370|sp|B6I5E1|RNC_ECOSE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|229564359|sp|B1XB41|RNC_ECODH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238691723|sp|B2TXY0|RNC_SHIB3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807247|sp|B7UH07|RNC_ECO27 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807248|sp|B7LDG0|RNC_ECO55 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807249|sp|B7MYJ8|RNC_ECO81 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|259491899|sp|C4ZYJ0|RNC_ECOBW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|12516984|gb|AAG57682.1|AE005487_6 RNase III, ds RNA [Escherichia coli O157:H7 str. EDL933] gi|26109338|gb|AAN81540.1|AE016764_222 Ribonuclease III [Escherichia coli CFT073] gi|42769|emb|CAA26692.1| unnamed protein product [Escherichia coli] gi|987642|dbj|BAA10914.1| ribonuclease III [Escherichia coli K-12] gi|1033156|gb|AAA79829.1| RNase III [Escherichia coli str. K-12 substr. MG1655] gi|1788920|gb|AAC75620.1| RNase III [Escherichia coli str. K-12 substr. MG1655] gi|13362904|dbj|BAB36856.1| RNase III [Escherichia coli O157:H7 str. Sakai] gi|24053010|gb|AAN44126.1| RNase III [Shigella flexneri 2a str. 301] gi|30042225|gb|AAP17950.1| RNase III [Shigella flexneri 2a str. 2457T] gi|73856606|gb|AAZ89313.1| RNase III [Shigella sonnei Ss046] gi|81242141|gb|ABB62851.1| RNase III, ds RNA [Shigella dysenteriae Sd197] gi|81246430|gb|ABB67138.1| RNase III [Shigella boydii Sb227] gi|85675458|dbj|BAE76743.1| RNase III [Escherichia coli str. K12 substr. W3110] gi|91073467|gb|ABE08348.1| RNase III, ds RNA [Escherichia coli UTI89] gi|110344321|gb|ABG70558.1| ribonuclease III [Escherichia coli 536] gi|110616060|gb|ABF04727.1| RNase III, ds RNA [Shigella flexneri 5 str. 8401] gi|115513912|gb|ABJ01987.1| RNase III [Escherichia coli APEC O1] gi|157067726|gb|ABV06981.1| ribonuclease III [Escherichia coli HS] gi|157079419|gb|ABV19127.1| ribonuclease III [Escherichia coli E24377A] gi|169754078|gb|ACA76777.1| Ribonuclease III [Escherichia coli ATCC 8739] gi|169890011|gb|ACB03718.1| RNase III [Escherichia coli str. K-12 substr. DH10B] gi|170123495|gb|EDS92426.1| ribonuclease III [Escherichia albertii TW07627] gi|170518615|gb|ACB16793.1| ribonuclease III [Escherichia coli SMS-3-5] gi|187429787|gb|ACD09061.1| ribonuclease III [Shigella boydii CDC 3083-94] gi|187770609|gb|EDU34453.1| ribonuclease III [Escherichia coli O157:H7 str. EC4196] gi|188017132|gb|EDU55254.1| ribonuclease III [Escherichia coli O157:H7 str. EC4113] gi|188487921|gb|EDU63024.1| ribonuclease III [Escherichia coli 53638] gi|189003491|gb|EDU72477.1| ribonuclease III [Escherichia coli O157:H7 str. EC4076] gi|189355317|gb|EDU73736.1| ribonuclease III [Escherichia coli O157:H7 str. EC4401] gi|189362280|gb|EDU80699.1| ribonuclease III [Escherichia coli O157:H7 str. EC4486] gi|189368381|gb|EDU86797.1| ribonuclease III [Escherichia coli O157:H7 str. EC4501] gi|189372250|gb|EDU90666.1| ribonuclease III [Escherichia coli O157:H7 str. EC869] gi|189378654|gb|EDU97070.1| ribonuclease III [Escherichia coli O157:H7 str. EC508] gi|190901994|gb|EDV61741.1| ribonuclease III [Escherichia coli B7A] gi|190905707|gb|EDV65329.1| ribonuclease III [Escherichia coli F11] gi|192929337|gb|EDV82946.1| ribonuclease III [Escherichia coli E22] gi|192958298|gb|EDV88738.1| ribonuclease III [Escherichia coli E110019] gi|194412671|gb|EDX28966.1| ribonuclease III [Escherichia coli B171] gi|194419624|gb|EDX35704.1| ribonuclease III [Shigella dysenteriae 1012] gi|194423376|gb|EDX39367.1| ribonuclease III [Escherichia coli 101-1] gi|208727421|gb|EDZ77022.1| ribonuclease III [Escherichia coli O157:H7 str. EC4206] gi|208733235|gb|EDZ81922.1| ribonuclease III [Escherichia coli O157:H7 str. EC4045] gi|208740471|gb|EDZ88153.1| ribonuclease III [Escherichia coli O157:H7 str. EC4042] gi|209162187|gb|ACI39620.1| ribonuclease III [Escherichia coli O157:H7 str. EC4115] gi|209762878|gb|ACI79751.1| RNase III [Escherichia coli] gi|209762880|gb|ACI79752.1| RNase III [Escherichia coli] gi|209762882|gb|ACI79753.1| RNase III [Escherichia coli] gi|209762884|gb|ACI79754.1| RNase III [Escherichia coli] gi|209762886|gb|ACI79755.1| RNase III [Escherichia coli] gi|209913305|dbj|BAG78379.1| ribonuclease III [Escherichia coli SE11] gi|215265983|emb|CAS10392.1| RNase III [Escherichia coli O127:H6 str. E2348/69] gi|217319891|gb|EEC28316.1| ribonuclease III [Escherichia coli O157:H7 str. TW14588] gi|218352927|emb|CAU98726.1| RNase III [Escherichia coli 55989] gi|218355446|emb|CAQ88055.1| RNase III [Escherichia fergusonii ATCC 35469] gi|218361916|emb|CAQ99516.1| RNase III [Escherichia coli IAI1] gi|218366257|emb|CAR04004.1| RNase III [Escherichia coli S88] gi|218371067|emb|CAR18894.1| RNase III [Escherichia coli IAI39] gi|218428247|emb|CAR09164.2| RNase III [Escherichia coli ED1a] gi|218433168|emb|CAR14064.1| RNase III [Escherichia coli UMN026] gi|222034272|emb|CAP77013.1| ribonuclease 3 [Escherichia coli LF82] gi|226901443|gb|EEH87702.1| ribonuclease III [Escherichia sp. 3_2_53FAA] gi|238863504|gb|ACR65502.1| RNase III [Escherichia coli BW2952] gi|242378168|emb|CAQ32942.1| RNase III [Escherichia coli BL21(DE3)] gi|253323578|gb|ACT28180.1| ribonuclease III [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974443|gb|ACT40114.1| ribonuclease III [Escherichia coli B str. REL606] gi|253978610|gb|ACT44280.1| ribonuclease III [Escherichia coli BL21(DE3)] gi|254593917|gb|ACT73278.1| RNase III [Escherichia coli O157:H7 str. TW14359] gi|257755310|dbj|BAI26812.1| RNase III [Escherichia coli O26:H11 str. 11368] gi|257760399|dbj|BAI31896.1| RNase III [Escherichia coli O103:H2 str. 12009] gi|257765610|dbj|BAI37105.1| RNase III [Escherichia coli O111:H- str. 11128] gi|260448353|gb|ACX38775.1| Ribonuclease III [Escherichia coli DH1] gi|281179616|dbj|BAI55946.1| ribonuclease III [Escherichia coli SE15] gi|281601980|gb|ADA74964.1| Ribonuclease 3 [Shigella flexneri 2002017] gi|284922517|emb|CBG35604.1| Ribonuclease III [Escherichia coli 042] gi|290763715|gb|ADD57676.1| Ribonuclease 3 [Escherichia coli O55:H7 str. CB9615] gi|294490667|gb|ADE89423.1| ribonuclease III [Escherichia coli IHE3034] gi|306906363|gb|EFN36878.1| ribonuclease III [Escherichia coli W] gi|307554586|gb|ADN47361.1| ribonuclease III [Escherichia coli ABU 83972] gi|307625885|gb|ADN70189.1| ribonuclease III [Escherichia coli UM146] gi|308927515|gb|EFP72987.1| ribonuclease III [Shigella dysenteriae 1617] gi|309702953|emb|CBJ02284.1| Ribonuclease III [Escherichia coli ETEC H10407] gi|310331782|gb|EFP99017.1| ribonuclease III [Escherichia coli 1827-70] gi|312289903|gb|EFR17791.1| ribonuclease III [Escherichia coli 2362-75] gi|312947138|gb|ADR27965.1| ribonuclease III [Escherichia coli O83:H1 str. NRG 857C] gi|315061886|gb|ADT76213.1| RNase III [Escherichia coli W] gi|315137191|dbj|BAJ44350.1| RNase III [Escherichia coli DH1] gi|315615829|gb|EFU96461.1| ribonuclease III [Escherichia coli 3431] gi|320182108|gb|EFW57012.1| Ribonuclease III [Shigella boydii ATCC 9905] gi|320186366|gb|EFW61100.1| Ribonuclease III [Shigella flexneri CDC 796-83] gi|320188908|gb|EFW63567.1| Ribonuclease III [Escherichia coli O157:H7 str. EC1212] gi|320196403|gb|EFW71027.1| Ribonuclease III [Escherichia coli WV_060327] gi|320200131|gb|EFW74720.1| Ribonuclease III [Escherichia coli EC4100B] gi|320640816|gb|EFX10310.1| ribonuclease III [Escherichia coli O157:H7 str. G5101] gi|320646162|gb|EFX15102.1| ribonuclease III [Escherichia coli O157:H- str. 493-89] gi|320651457|gb|EFX19853.1| ribonuclease III [Escherichia coli O157:H- str. H 2687] gi|320657058|gb|EFX24877.1| ribonuclease III [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320667543|gb|EFX34463.1| ribonuclease III [Escherichia coli O157:H7 str. LSU-61] gi|323159224|gb|EFZ45214.1| ribonuclease III [Escherichia coli E128010] gi|323167799|gb|EFZ53494.1| ribonuclease III [Shigella sonnei 53G] gi|323184553|gb|EFZ69927.1| ribonuclease III [Escherichia coli 1357] gi|323188318|gb|EFZ73610.1| ribonuclease III [Escherichia coli RN587/1] gi|323377533|gb|ADX49801.1| ribonuclease III [Escherichia coli KO11] gi|323936307|gb|EGB32598.1| ribonuclease III [Escherichia coli E1520] gi|323941170|gb|EGB37355.1| ribonuclease III [Escherichia coli E482] gi|323944624|gb|EGB40692.1| ribonuclease III [Escherichia coli H120] gi|323949221|gb|EGB45112.1| ribonuclease III [Escherichia coli H252] gi|323955803|gb|EGB51561.1| ribonuclease III [Escherichia coli H263] gi|323961182|gb|EGB56795.1| ribonuclease III [Escherichia coli H489] gi|323968015|gb|EGB63427.1| ribonuclease III [Escherichia coli M863] gi|323971107|gb|EGB66354.1| ribonuclease III [Escherichia coli TA007] gi|323978403|gb|EGB73488.1| ribonuclease III [Escherichia coli TW10509] gi|324113094|gb|EGC07070.1| ribonuclease III [Escherichia fergusonii B253] gi|324118223|gb|EGC12119.1| ribonuclease III [Escherichia coli E1167] gi|325496353|gb|EGC94212.1| ribonuclease III [Escherichia fergusonii ECD227] gi|326340373|gb|EGD64177.1| Ribonuclease III [Escherichia coli O157:H7 str. 1125] gi|327252277|gb|EGE63949.1| ribonuclease III [Escherichia coli STEC_7v] gi|330912336|gb|EGH40846.1| ribonuclease 3 [Escherichia coli AA86] gi|331039989|gb|EGI12209.1| ribonuclease III [Escherichia coli H736] gi|331042862|gb|EGI15003.1| ribonuclease III [Escherichia coli M605] gi|331048878|gb|EGI20954.1| ribonuclease III [Escherichia coli M718] gi|331054376|gb|EGI26403.1| ribonuclease III [Escherichia coli TA206] gi|331059934|gb|EGI31911.1| ribonuclease III [Escherichia coli TA143] gi|331064511|gb|EGI36422.1| ribonuclease III [Escherichia coli TA271] gi|331069289|gb|EGI40681.1| ribonuclease III [Escherichia coli TA280] gi|331075023|gb|EGI46343.1| ribonuclease III [Escherichia coli H591] gi|331079169|gb|EGI50371.1| ribonuclease III [Escherichia coli H299] gi|332088079|gb|EGI93204.1| ribonuclease III [Shigella boydii 5216-82] gi|332089189|gb|EGI94296.1| ribonuclease III [Shigella dysenteriae 155-74] gi|332100627|gb|EGJ03973.1| ribonuclease III [Shigella sp. D9] gi|332344442|gb|AEE57776.1| ribonuclease III [Escherichia coli UMNK88] gi|332753976|gb|EGJ84350.1| ribonuclease III [Shigella flexneri 4343-70] gi|332755808|gb|EGJ86166.1| ribonuclease III [Shigella flexneri 2747-71] gi|332761960|gb|EGJ92233.1| ribonuclease III [Shigella flexneri K-671] gi|332766568|gb|EGJ96773.1| ribonuclease III [Shigella flexneri 2930-71] Length = 226 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|81648073|sp|Q6G459|RNC_BARHE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|49238110|emb|CAF27317.1| Ribonuclease III [Bartonella henselae str. Houston-1] Length = 235 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 117/226 (51%), Positives = 155/226 (68%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LEK G+ F ++ L+KALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 1 MKLPMIDQLEKLTGHYFKDKKKLKKALTHSSVQGSEQGNYERLEFLGDRVLGLLIAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR NSLV+A+TC+ +A E++L I V +++ +T++ ADV+E Sbjct: 61 QLFPQASEGELSVRLNSLVNAQTCADIALEMELPVMIHVGFEMKNLKGRRLTNMYADVIE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG+E F+ +YW+ RA + RRDAKT+LQEWAH + GV P Y+V R Sbjct: 121 ALIAVIYLDGGLESVRPFIQRYWQSRAKQMDAGRRDAKTQLQEWAHVQGGVQPHYRVVKR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDP F V V I G A G SKR AE++AA ++L+REGIW Sbjct: 181 SGPDHDPVFMVEVSIPGFASEIGQGNSKRCAERMAAEKILRREGIW 226 >gi|149002616|ref|ZP_01827548.1| ribonuclease III [Streptococcus pneumoniae SP14-BS69] gi|168485011|ref|ZP_02709949.1| ribonuclease III [Streptococcus pneumoniae CDC1873-00] gi|168491168|ref|ZP_02715311.1| ribonuclease III [Streptococcus pneumoniae CDC0288-04] gi|225856914|ref|YP_002738425.1| ribonuclease III [Streptococcus pneumoniae P1031] gi|237649948|ref|ZP_04524200.1| ribonuclease III [Streptococcus pneumoniae CCRI 1974] gi|237822503|ref|ZP_04598348.1| ribonuclease III [Streptococcus pneumoniae CCRI 1974M2] gi|254807905|sp|C1CKY7|RNC_STRZP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|147759227|gb|EDK66220.1| ribonuclease III [Streptococcus pneumoniae SP14-BS69] gi|172041872|gb|EDT49918.1| ribonuclease III [Streptococcus pneumoniae CDC1873-00] gi|183574495|gb|EDT95023.1| ribonuclease III [Streptococcus pneumoniae CDC0288-04] gi|225724496|gb|ACO20348.1| ribonuclease III [Streptococcus pneumoniae P1031] gi|332200695|gb|EGJ14767.1| ribonuclease III [Streptococcus pneumoniae GA41317] gi|332201711|gb|EGJ15781.1| ribonuclease III [Streptococcus pneumoniae GA47368] Length = 232 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 8/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFNQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+ + AL LD + F+ + + +++G+F D KT LQE V Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVIIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIR 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|213161855|ref|ZP_03347565.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 231 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 114/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 6 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 63 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ + P Y V Sbjct: 123 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 182 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 183 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 215 >gi|146312695|ref|YP_001177769.1| ribonuclease III [Enterobacter sp. 638] gi|189043313|sp|A4WDD8|RNC_ENT38 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|145319571|gb|ABP61718.1| RNAse III [Enterobacter sp. 638] Length = 226 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQHHELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEQLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|149183216|ref|ZP_01861662.1| ribonuclease III [Bacillus sp. SG-1] gi|148849081|gb|EDL63285.1| ribonuclease III [Bacillus sp. SG-1] Length = 249 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 7/226 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 ++ +++ F N LL +A THSS + ++ E ERLEFLGD +L L +S L Sbjct: 18 EKFKEFQRKHNIKFNNEKLLRQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTVSQFL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EGEL+ ++V + A EL + + ++ ADV Sbjct: 78 YKKYPTMSEGELTKLRAAIVCEPSLVTFANELKFGELVLLGKGEELTGGRERPALLADVF 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E+ I ALYLD G+E + +++ + + SG F D K++LQE T EY + Sbjct: 138 EAFIGALYLDQGLEPVLSILEENVYPK-INSGAFSHVMDFKSQLQELVQRDSAGTIEYGI 196 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F V ++G G SK+ AEQ AA L++ Sbjct: 197 LQEKGPAHNREFVSRVCLNGEELGIGTGRSKKEAEQHAAQMALEKL 242 >gi|126654291|ref|ZP_01726068.1| ribonuclease III [Bacillus sp. B14905] gi|126589255|gb|EAZ83416.1| ribonuclease III [Bacillus sp. B14905] Length = 254 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 5/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 ++ L+ + F N++LL +A THSS + ++ ERLEFLGD +L L +S LF Sbjct: 22 QFELLQHELNITFVNKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EGEL+ S+V + A EL F+ + ++ ADV E Sbjct: 82 EKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 S + ALYLD ++ +F+++ + + + D K++LQE Y++ Sbjct: 142 SFVGALYLDQDLQTVVSFLERIVFPKVEVGAFSHVMDFKSQLQEMVQQTNNGLLHYEIID 201 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H+ F V ++G G SK+ AEQ AA ++ Sbjct: 202 EKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAAQCAMR 243 >gi|154505348|ref|ZP_02042086.1| hypothetical protein RUMGNA_02863 [Ruminococcus gnavus ATCC 29149] gi|153794391|gb|EDN76811.1| hypothetical protein RUMGNA_02863 [Ruminococcus gnavus ATCC 29149] Length = 252 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 75/215 (34%), Positives = 111/215 (51%), Gaps = 5/215 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY F + SLLE+A+ HSS ++ ERLEFLGD +L L+ S LF E Sbjct: 35 IGYEFQDFSLLEQAMMHSSYTNEKHLEKYHCNERLEFLGDAVLELVSSEFLFLESPKVSE 94 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ S+V + + ARE++L S++ + S+ +D +E+LI A+YL Sbjct: 95 GKLTKTRASMVCEPSLAFCAREIELGSYLLLGKGEEATGGRQRPSVTSDAMEALIGAIYL 154 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG A F+ ++ L++ K D+KT LQE A Y + GPDH+ Sbjct: 155 DGGFTNAKEFIHRFILT-DLENKKLFYDSKTILQEIVQADMEEGISYHLIKEEGPDHNKS 213 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 FTV V+I G +K+AAEQ AA + + + Sbjct: 214 FTVEVKIGETVYGTGSGRTKKAAEQEAAYKAILKL 248 >gi|332799147|ref|YP_004460646.1| Ribonuclease 3 [Tepidanaerobacter sp. Re1] gi|332696882|gb|AEE91339.1| Ribonuclease 3 [Tepidanaerobacter sp. Re1] Length = 238 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 112/222 (50%), Gaps = 6/222 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFD 64 L++ IG F N + L +A H S+++ YQE+ +RLEFLGD +L L IS L+ H+D Sbjct: 14 LQENIGIQFNNLNTLNQAFIHPSLTNEKEKPYQENNQRLEFLGDAVLELAISEYLYRHYD 73 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+++ V + +Q+AR+L L ++ +S SI AD +E+LI Sbjct: 74 FLTEGQMTKIRAFTVCESSLAQIARQLFLGDYLILSKGEENTGGREKVSILADTLEALIG 133 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+Y+D + F+ K + K+ G++ D KT+LQE Y V SG Sbjct: 134 AIYIDKNYKTTYDFIIKNLEAIIFKAIQGEWGTDYKTDLQELLQKFDEDKILYNVVNESG 193 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDHD F V V G+ SK+ AEQ AA E L R Sbjct: 194 PDHDKLFCVEVVWKNKILGTGIGKSKKQAEQNAAKEALDRMN 235 >gi|110798679|ref|YP_696405.1| ribonuclease III [Clostridium perfringens ATCC 13124] gi|110673326|gb|ABG82313.1| ribonuclease III [Clostridium perfringens ATCC 13124] Length = 241 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 121/225 (53%), Gaps = 4/225 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + +EK IG F N+ +L ALTHSS ++ ++ + ERLEFLGD +L L ++ LFN Sbjct: 8 INLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKYLFN 67 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ EGEL+ +V + +V++ L L +IR+S TSIQAD +E+ Sbjct: 68 NYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADALEA 127 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +IAA+YLD GIEVA F+ + +K K+ + D KT LQE V Y + Sbjct: 128 VIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYNLVK 187 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H +F + I+ QG+ SK+ +EQ AA L+R G Sbjct: 188 HEGPPHRRKFFTDLLINNEIMGQGVGFSKKESEQNAAKAALQRLG 232 >gi|15901109|ref|NP_345713.1| ribonuclease III [Streptococcus pneumoniae TIGR4] gi|111658429|ref|ZP_01409108.1| hypothetical protein SpneT_02000400 [Streptococcus pneumoniae TIGR4] gi|22654070|sp|Q97QG6|RNC_STRPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|14972730|gb|AAK75353.1| ribonuclease III [Streptococcus pneumoniae TIGR4] Length = 232 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 112/228 (49%), Gaps = 8/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ FA++ LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+ + AL LD + F+ + + +++G+F D KT LQE V Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIR 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|169827094|ref|YP_001697252.1| ribonuclease 3 [Lysinibacillus sphaericus C3-41] gi|168991582|gb|ACA39122.1| Ribonuclease 3 [Lysinibacillus sphaericus C3-41] Length = 254 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 5/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 ++ L+ + F N++LL +A THSS + ++ ERLEFLGD +L L +S LF Sbjct: 22 QFELLQHELNITFINKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EGEL+ S+V + A EL F+ + ++ ADV E Sbjct: 82 EKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 S + ALYLD ++ +F+++ + + + D K++LQE Y++ Sbjct: 142 SFVGALYLDQDLQTVVSFLERIVFPKVEVGAFSHVMDFKSQLQEMVQQTNNGLLHYEIID 201 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H+ F V ++G G SK+ AEQ AA ++ Sbjct: 202 EKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAAQCAMR 243 >gi|327394842|dbj|BAK12264.1| ribonuclease III Rnc [Pantoea ananatis AJ13355] Length = 226 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINKLQRKLGYTFTHSELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEKLILDWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG+ P G+ S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 210 >gi|301154741|emb|CBW14204.1| RNase III [Haemophilus parainfluenzae T3T1] Length = 227 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 115/227 (50%), Gaps = 11/227 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L LE++IGY F++ L+ ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNHLD--RLERKIGYQFSDLKNLKLALTHRSAS---TQHNERLEFLGDSILNYVIADALY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR +L ++ + S K SI AD VE Sbjct: 56 HQFPRCNEGELSRMRATLVREPTLAIIARNFELGDYMSLGSGELKSGGFRRESILADCVE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD + A V ++K +K G ++DAKT LQE+ K P Y+V Sbjct: 116 AVIGAMALDSSFDKAADIVRSWYKTLLAEIKPGDNQKDAKTRLQEYLQGKHFALPTYEVI 175 Query: 179 FRSGPDHDPRFTVVVEISGLA----PAQGMDCSKRAAEQVAAAEVLK 221 G H FTV + + S+R AEQ AA ++LK Sbjct: 176 KIEGEAHCQTFTVECTVKNVPNIDRTFIAKGSSRRKAEQAAAEQILK 222 >gi|254507535|ref|ZP_05119669.1| ribonuclease III [Vibrio parahaemolyticus 16] gi|219549605|gb|EED26596.1| ribonuclease III [Vibrio parahaemolyticus 16] Length = 225 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 75/213 (35%), Positives = 116/213 (54%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ + LEK++GY F + L+ ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIAKLEKKVGYQFNDAELINLALTHRSANGKH---NERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE +L +++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD IEV + + +++ R A+K G ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDIEVVRSIILSWYQSRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210 G H+ FTV E++G+ P G S+R Sbjct: 177 NIKGEAHNQEFTVSCEVAGIGQPVIGKGTSRRK 209 >gi|254448879|ref|ZP_05062335.1| ribonuclease III [gamma proteobacterium HTCC5015] gi|198261569|gb|EDY85858.1| ribonuclease III [gamma proteobacterium HTCC5015] Length = 225 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 115/221 (52%), Gaps = 6/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 STL+ + Y F+N LLE A+TH S S + + ERLEFLGD IL ++ LF F Sbjct: 2 LSTLQSTLNYTFSNGDLLEVAVTHRSASKT---NNERLEFLGDSILNFTVAAELFERFPE 58 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS SLV + + A+++DL F+++ K SI AD VE++I A Sbjct: 59 RPEGDLSRLRASLVDKSSLAAHAKKMDLGPFLKLGGGELKSGGWRRDSILADAVEAIIGA 118 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGGIE A F+ + +L + +DAKT LQEW + P+Y++ SG Sbjct: 119 IYLDGGIESAQQFIRDLYDGDFESLPTANELKDAKTRLQEWLQGRHYALPQYEMVEVSGK 178 Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ +FTV I S+R AEQ AA L + Sbjct: 179 PHEQQFTVSCYIDSHDVQVNATGRSRRKAEQAAAETALAQL 219 >gi|308187806|ref|YP_003931937.1| RNase III, ds RNA [Pantoea vagans C9-1] gi|308058316|gb|ADO10488.1| RNase III, ds RNA [Pantoea vagans C9-1] Length = 226 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 114/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINKLQRKLGYTFTHSELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD IE + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSSIERVEQLILDWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG+ P G+ S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 210 >gi|313906054|ref|ZP_07839406.1| ribonuclease III [Eubacterium cellulosolvens 6] gi|313469099|gb|EFR64449.1| ribonuclease III [Eubacterium cellulosolvens 6] Length = 228 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 115/224 (51%), Gaps = 7/224 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLIS 56 M LR LE++ G+ F + S L+ A++HSS ++ ++ ERLEFLGD +L L+ S Sbjct: 1 MKKLR--ELEQKTGHVFNDISWLKLAMSHSSYANEQHLGHRGCNERLEFLGDAVLELVSS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L++ + EG+L+ SLV T + AR + L ++ + S+ + Sbjct: 59 EYLYDTYPEMPEGKLTRLRASLVCEPTLAYDARCIGLPEYLLLGKGEDATGGRKRDSVVS 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+ I A++ DGG E A F+ +Y +++ + D+KT LQE + Y+ Sbjct: 119 DALEATIGAIFKDGGFEEAKKFILRYI-MNDVENKQLFHDSKTRLQEMIQSVTDEELSYQ 177 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + SGPDH+ F V + +G SK+AAEQ AA + + Sbjct: 178 IVAESGPDHEKVFEAEVRLGDKLLGRGTGHSKKAAEQQAAYKAI 221 >gi|210612575|ref|ZP_03289366.1| hypothetical protein CLONEX_01568 [Clostridium nexile DSM 1787] gi|210151500|gb|EEA82507.1| hypothetical protein CLONEX_01568 [Clostridium nexile DSM 1787] Length = 231 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 112/220 (50%), Gaps = 5/220 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHF 63 L++RIGY F + LL+ AL HSS ++ + ERLEFLGD +L L+ S LF Sbjct: 7 ELQERIGYTFRRQELLKSALMHSSYTNETHLPKYKCNERLEFLGDAVLELVSSEFLFFAD 66 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EGEL+ S+V + + ARE++L ++ + SI +D +E+LI Sbjct: 67 RKMPEGELTKTRASMVCEPSLAFCAREIELGKYLFMGRGEENTGGRERDSITSDALEALI 126 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG A F+ K+ L+ K D+KT LQE A F Y + GP Sbjct: 127 GAIYLDGGFANAKEFILKFVL-NDLEHKKLFYDSKTILQEIVQAHFPYGVLYHLIKEEGP 185 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH+ FTV V I +G +K+AAEQ AA + + Sbjct: 186 DHNKSFTVAVHIGEECYGEGTGRTKKAAEQEAAYHAILKL 225 >gi|16761493|ref|NP_457110.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|22654063|sp|Q8Z4K4|RNC_SALTI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|25289227|pir||AC0829 ribonuclease III (EC 3.1.26.3) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503793|emb|CAD02783.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi] Length = 226 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ P Y V Sbjct: 118 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGHHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|149192067|ref|ZP_01870292.1| ribonuclease III [Vibrio shilonii AK1] gi|148834092|gb|EDL51104.1| ribonuclease III [Vibrio shilonii AK1] Length = 225 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 75/213 (35%), Positives = 114/213 (53%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ LEK++GY F + LL ALTH S + ++ ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-SIERLEKKLGYHFNDSELLMLALTHRSANGNH---NERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE L ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGNTLAELGREFVLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD +E+ V ++ R A+K G ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDVEMVRKIVLSWYMTRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H+ FTV E++G+ P G S+R Sbjct: 177 NIKGEAHNQEFTVSCEVAGVDEPVIGRGTSRRK 209 >gi|238897755|ref|YP_002923434.1| RNase III, ds RNA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259491902|sp|C4K3Z3|RNC_HAMD5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|229465512|gb|ACQ67286.1| RNase III, ds RNA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 226 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+++ ++LE ++ Y+F RSLL +ALTH S+ + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNSININSLELKLRYSFKERSLLLQALTHRSL---HTQHNERLEFLGDSILSFVIANQLY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG +S +LV +T +++ARE D+ +++++ K + SI AD +E Sbjct: 58 HRFPEINEGNMSRMRATLVRGDTLTEIAREFDIGAYLQLGQGELKTGGAQRESILADSIE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++LD I+ + +++ +R + ++D KT LQE+ + P Y + Sbjct: 118 AIIGAIFLDSDIQTVEKTILRWYHKRLEQINPTHHQKDPKTRLQEYMQSHQLPLPFYLLA 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G HD FT+ ++SG G ++R AEQ AA + LK+ Sbjct: 178 QVCGEAHDQEFTIHCQVSGLEELVVGKGSNRRKAEQEAAEKTLKKL 223 >gi|296444865|ref|ZP_06886827.1| ribonuclease III [Methylosinus trichosporium OB3b] gi|296257533|gb|EFH04598.1| ribonuclease III [Methylosinus trichosporium OB3b] Length = 233 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 102/221 (46%), Positives = 132/221 (59%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE +G+ F NR LLE ALTH S S + ESYERLEFLGDR+LG++++ LL+ F Sbjct: 8 DLEALEASVGHGFVNRGLLEHALTHVSGSTARTESYERLEFLGDRVLGVVVAHLLYETFP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGELS R LV E+C++VA + F+R+ + +I D+ E++I Sbjct: 68 AESEGELSRRLADLVRKESCAEVAERWGVGPFMRLGDGEAQTGGRKKRAILGDMCEAIIG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG A V + + R G+ RDAKT LQEWA A+ TP Y++T RSGPD Sbjct: 128 AVYLDGGAAAAEAVVREAFGARMQTQGRRLRDAKTSLQEWAQARRLPTPCYRMTSRSGPD 187 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 H P F V V + G PA+G SKR AEQ AA L REGI Sbjct: 188 HAPFFKVEVVVEGFVPAEGGGASKRVAEQSAAQAFLDREGI 228 >gi|325577735|ref|ZP_08148010.1| ribonuclease III [Haemophilus parainfluenzae ATCC 33392] gi|325160480|gb|EGC72606.1| ribonuclease III [Haemophilus parainfluenzae ATCC 33392] Length = 227 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 115/227 (50%), Gaps = 11/227 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L LE++IGY F++ L+ ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNHLD--RLERKIGYQFSDLKNLKLALTHRSAS---TQHNERLEFLGDSILNYVIADALY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR +L ++ + S K SI AD VE Sbjct: 56 HQFPRCNEGELSRMRATLVREPTLAMLARNFELGDYMSLGSGELKSGGFRRESILADCVE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD + A V ++K +K G ++DAKT LQE+ K P Y+V Sbjct: 116 AVIGAMALDSSFDKAADIVRSWYKTLLAEIKPGDNQKDAKTRLQEYLQGKHFALPTYEVI 175 Query: 179 FRSGPDHDPRFTVVVEISGLA----PAQGMDCSKRAAEQVAAAEVLK 221 G H FTV + + S+R AEQ AA ++LK Sbjct: 176 KIEGEAHCQTFTVECTVKNVPNIDRTFIAKGSSRRKAEQAAAEQILK 222 >gi|313673188|ref|YP_004051299.1| rnase iii [Calditerrivibrio nitroreducens DSM 19672] gi|312939944|gb|ADR19136.1| RNAse III [Calditerrivibrio nitroreducens DSM 19672] Length = 229 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 114/220 (51%), Gaps = 4/220 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + L + + Y F N+ LL +ALTHSS S+ + +YERLEFLGD +L L++S L Sbjct: 1 MNLEKLNEILNYNFENKELLIEALTHSSYSYENKLCRNYERLEFLGDAVLQLIVSEYLIF 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG LS VS E S++A+++DL +FIR+ SI D+ ES Sbjct: 61 KYKDFDEGMLSRYRAYFVSEEFISELAKQIDLGNFIRLGKGELNSGGKDRPSILCDIFES 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++AA+YLDGG A F+ + + D K+ELQ+ F P+YKV Sbjct: 121 IVAAMYLDGGYNEARRFIITIASDKIDEVIQQNIFTDYKSELQKLTQKIFESLPDYKVKD 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +GP+HD F V + I+ G SK+ AEQ AA + Sbjct: 181 ETGPEHDKTFIVDLYINDRYYCSGSGKSKKKAEQDAAKKA 220 >gi|292489090|ref|YP_003531977.1| RNase III, ds RNA [Erwinia amylovora CFBP1430] gi|292900214|ref|YP_003539583.1| Ribonuclease III [Erwinia amylovora ATCC 49946] gi|291200062|emb|CBJ47188.1| Ribonuclease III [Erwinia amylovora ATCC 49946] gi|291554524|emb|CBA22094.1| RNase III, ds RNA [Erwinia amylovora CFBP1430] gi|312173248|emb|CBX81503.1| RNase III, ds RNA [Erwinia amylovora ATCC BAA-2158] Length = 226 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINKLQRKLGYTFTHQELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGYRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQRVEQLILSWYASRLDQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210 G HD FT+ ++SG+A P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGMADPVVGTGSSRRK 210 >gi|71281241|ref|YP_270777.1| ribonuclease III [Colwellia psychrerythraea 34H] gi|90101619|sp|Q47WP5|RNC_COLP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71146981|gb|AAZ27454.1| ribonuclease III [Colwellia psychrerythraea 34H] Length = 266 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 121/224 (54%), Gaps = 10/224 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + + L K++GY F LL +ALTH S ++ ERLEFLGD ILG +I+ L++ Sbjct: 4 NPHNLARLTKKLGYEFNEPLLLVQALTHRSAKGAH---NERLEFLGDSILGFVIAEALYD 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+L+ +SLV T ++VAR+ +L + + K SI D +E+ Sbjct: 61 KFPKHDEGDLTRMRSSLVKGVTLAEVARDFNLGECLILGPGELKSGGHHRESILEDAIEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +I A+YLD IE + ++++R +K G ++D KT LQE+ + P Y+V Sbjct: 121 IIGAVYLDSNIECCKALILSWFERRLMVIKPGNEQKDPKTRLQEFLQGRKIPLPTYEVID 180 Query: 180 RSGPDHDPRFTVVVE---ISGLAPAQGMDCSKRAAEQVAAAEVL 220 +G H+ FTV + IS + A+G S+R AEQ AA ++L Sbjct: 181 TTGQSHNQEFTVRCQTSVISEVVIAKGT--SRRKAEQEAAQQIL 222 >gi|311278500|ref|YP_003940731.1| ribonuclease III [Enterobacter cloacae SCF1] gi|308747695|gb|ADO47447.1| ribonuclease III [Enterobacter cloacae SCF1] Length = 226 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFHHQELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEQLILSWYQSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|266623888|ref|ZP_06116823.1| ribonuclease III [Clostridium hathewayi DSM 13479] gi|288864294|gb|EFC96592.1| ribonuclease III [Clostridium hathewayi DSM 13479] Length = 229 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 119/230 (51%), Gaps = 6/230 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 MS + LE RIGY F +R LL +A+THSS ++ ++ E ERLEFLGD +L ++ S Sbjct: 1 MSK-KLHELEGRIGYRFTDRQLLTQAMTHSSYANEHRLNKLECNERLEFLGDSVLEVVSS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L++ + EG+L+ S+V T + A ++DL +++ + S+ + Sbjct: 60 DFLYHKYPERPEGDLTKIRASIVCEPTLAYCAEDIDLGAYLLLGKGEEATGGRGRASVVS 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+LI A+YLDGG A F+ ++ ++ + D+KT LQE ++ Y+ Sbjct: 120 DAMEALIGAIYLDGGFANAKEFILRFI-MNDIEHKQLFFDSKTILQEIVQSQTDQPLAYE 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 + GPDH+ F I +G +K+AAE VAA + + W Sbjct: 179 LLREEGPDHNKLFESRALIGEEEIGRGTGRTKKAAEAVAAYHGILKLKKW 228 >gi|15903170|ref|NP_358720.1| ribonuclease III [Streptococcus pneumoniae R6] gi|116517072|ref|YP_816576.1| ribonuclease III [Streptococcus pneumoniae D39] gi|148989271|ref|ZP_01820651.1| ribonuclease III [Streptococcus pneumoniae SP6-BS73] gi|148998680|ref|ZP_01826119.1| ribonuclease III [Streptococcus pneumoniae SP11-BS70] gi|168575703|ref|ZP_02721618.1| ribonuclease III [Streptococcus pneumoniae MLV-016] gi|194398097|ref|YP_002037848.1| ribonuclease III [Streptococcus pneumoniae G54] gi|307067896|ref|YP_003876862.1| dsRNA-specific ribonuclease [Streptococcus pneumoniae AP200] gi|73917586|sp|Q8DPJ8|RNC_STRR6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122278538|sp|Q04K72|RNC_STRP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741378|sp|B5E4Y2|RNC_STRP4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|15458754|gb|AAK99930.1| Ribonuclease III [Streptococcus pneumoniae R6] gi|116077648|gb|ABJ55368.1| ribonuclease III [Streptococcus pneumoniae D39] gi|147755517|gb|EDK62565.1| ribonuclease III [Streptococcus pneumoniae SP11-BS70] gi|147925249|gb|EDK76328.1| ribonuclease III [Streptococcus pneumoniae SP6-BS73] gi|183578209|gb|EDT98737.1| ribonuclease III [Streptococcus pneumoniae MLV-016] gi|194357764|gb|ACF56212.1| ribonuclease III [Streptococcus pneumoniae G54] gi|306409433|gb|ADM84860.1| dsRNA-specific ribonuclease [Streptococcus pneumoniae AP200] Length = 232 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 112/228 (49%), Gaps = 8/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ FA++ LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFEIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+ + AL LD + F+ + + +++G+F D KT LQE V Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIR 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|2500552|sp|Q52698|RNC_RHOCA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|1177610|emb|CAA92647.1| endoribonuclease III [Rhodobacter capsulatus] Length = 228 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 87/221 (39%), Positives = 124/221 (56%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 A S R+G+ F L +ALTHSS+ + + +RLEFLGDR+LGL ++ LF+ Sbjct: 4 AADLSAFMDRLGHRFTTPEHLVRALTHSSLGSATRPDNQRLEFLGDRVLGLSMAEALFHA 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A EG+L+ RFN+LV ETC+ VAR++DL + +++ ++ D +E++ Sbjct: 64 DGRASEGQLAPRFNALVRKETCAAVARDIDLGAVLKLGRSEMMSGGRRKDALLGDAMEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YLD G EVA V + W R RD KT LQEWA A+ P Y+ R G Sbjct: 124 IAAVYLDAGFEVARALVLRLWAARIQSVDNDARDPKTALQEWAQARGLPPPRYETLGRDG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH P+F + V ++ + SKR AEQ AA +L+R Sbjct: 184 PDHAPQFRIAVVLASGETEEAQAGSKRNAEQAAAKALLERL 224 >gi|294678827|ref|YP_003579442.1| ribonuclease III [Rhodobacter capsulatus SB 1003] gi|294477647|gb|ADE87035.1| ribonuclease III [Rhodobacter capsulatus SB 1003] Length = 228 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 87/221 (39%), Positives = 124/221 (56%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 A S R+G+ F L +ALTHSS+ + + +RLEFLGDR+LGL ++ LF+ Sbjct: 4 AADLSAFMDRLGHRFTTPEHLVRALTHSSLGSATRPDNQRLEFLGDRVLGLSMAEALFHA 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A EG+L+ RFN+LV ETC+ VAR++DL + +++ ++ D +E++ Sbjct: 64 DGRASEGQLAPRFNALVRKETCAAVARDIDLGAVLKLGRSEMMSGGRRKDALLGDAMEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YLD G EVA V + W R RD KT LQEWA A+ P Y+ R G Sbjct: 124 IAAVYLDAGFEVARALVLRLWAGRIQSVDNDARDPKTALQEWAQARGLPPPRYETLGREG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH P+F + V ++ + SKR AEQ AA +L+R Sbjct: 184 PDHAPQFRIAVVLASGETEEAQAGSKRNAEQAAAKALLERL 224 >gi|213018872|ref|ZP_03334680.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995823|gb|EEB56463.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 233 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 127/228 (55%), Gaps = 6/228 (2%) Query: 1 MSALRY--STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLL 54 M +R T+ K I Y F + ++LE+ALTH S++ E YERLEFLGD +L ++ Sbjct: 1 MINMRVLNDTISKVINYKFTDYAILEEALTHPSVNKRNSEDQVVSYERLEFLGDSVLNMV 60 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 +S +LF F KEG L+ R LV T + VA+E++L +FI +++ R + Sbjct: 61 VSVMLFKMFPEEKEGALAKRKTDLVCGSTIANVAKEIELGNFIIMNNSERCNGGKCNLKN 120 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 + +E+LI A+Y+DGG+E F+ ++W++ A +D KT LQEW P+ Sbjct: 121 LENSLEALIGAIYIDGGLESVEKFIIRHWEKLAKDILDPPQDPKTSLQEWTQRNKLPLPK 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y++ ++GP H+P FT+ V I SK+ AEQ AA +L++ Sbjct: 181 YELVKQTGPAHNPEFTISVCIESYDKVSACAPSKKIAEQKAAELILEK 228 >gi|282600119|ref|ZP_05973085.2| ribonuclease III [Providencia rustigianii DSM 4541] gi|282566488|gb|EFB72023.1| ribonuclease III [Providencia rustigianii DSM 4541] Length = 263 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 111/213 (52%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L L++++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 38 MNPLLLEKLQRKLGYTFTQHDLLIQALTHRSASSKH---NERLEFLGDSILSFVIANDLY 94 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 95 HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 154 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ + P Y V Sbjct: 155 ALIGGIFLDSDIQTIERIILAWYKGRLDEISPGDKQKDPKTRLQEYLQGRHLPLPNYLVV 214 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRA 210 G HD FT+ E+SG+ + G+ S+R Sbjct: 215 QVKGEAHDQEFTIHCEVSGIEQSINGVGSSRRK 247 >gi|239624036|ref|ZP_04667067.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522067|gb|EEQ61933.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 235 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 117/222 (52%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 LE+RI Y F ++SL +ALTHSS ++ ++ ERLEFLGD +L ++ S L++ Sbjct: 5 LKELEERIDYQFKDQSLFSQALTHSSYANEHRLDHSRCNERLEFLGDAVLEIVTSDFLYH 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EG+L+ S+V T + A ++ L ++ + S+ +D +E+ Sbjct: 65 KYATLPEGDLTKIRASIVCEPTLAYCAGDIRLGEYLFLGKGEDATGGRGRNSVVSDAMEA 124 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 LI A+YLDGG A F+ ++ ++ + D+KT LQE ++ Y++ Sbjct: 125 LIGAIYLDGGFANAKEFIHRFIL-NDIEHKQLFYDSKTILQEMVQSRQAEALSYEILREE 183 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH+ F V +I +GM +K+AAEQVAA + + Sbjct: 184 GPDHNKSFEVCAKIGDAEIGRGMGRTKKAAEQVAAYNGILKL 225 >gi|238923872|ref|YP_002937388.1| ribonuclease III [Eubacterium rectale ATCC 33656] gi|238875547|gb|ACR75254.1| ribonuclease III [Eubacterium rectale ATCC 33656] Length = 237 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 72/209 (34%), Positives = 111/209 (53%), Gaps = 6/209 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + + +IGY F NR LLE+ALTHSS ++ ERLEFLGD +L ++ S LF Sbjct: 13 DLNEFQSKIGYTFKNRHLLEQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSEFLF 72 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ EGEL+ S+V T + + LDL ++R+ SI +D +E Sbjct: 73 INYPQKPEGELTKLRASIVCEPTLALCTKPLDLGKYLRLGRGEDHTGGRKRKSILSDALE 132 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++I A+YLDGG A FV ++ +++ + D+KT LQE + Y++ Sbjct: 133 AVIGAIYLDGGFTNAKEFVLRFIMT-DIENKQLFYDSKTILQELIQGRHEQL-SYELIDE 190 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SGPDHD +FTV V + G ++G +K+ Sbjct: 191 SGPDHDKQFTVAVLVDGERVSEGEGHTKK 219 >gi|114320503|ref|YP_742186.1| ribonuclease III [Alkalilimnicola ehrlichii MLHE-1] gi|122311783|sp|Q0A8Z1|RNC_ALHEH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|114226897|gb|ABI56696.1| RNAse III [Alkalilimnicola ehrlichii MLHE-1] Length = 228 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 79/219 (36%), Positives = 115/219 (52%), Gaps = 6/219 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ R+GY F LL++ALTH S++ ERLEFLGD IL +I+ L++ A Sbjct: 7 ALQDRLGYRFRRPELLDEALTHRSVT---GPDNERLEFLGDGILNFVIADELYHRRPDAT 63 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG LS +LV+ T +++ + LD+ + +R+ K SI AD VE+L A+Y Sbjct: 64 EGVLSRLRATLVNGRTLAEIGKGLDVGTALRLGGGEMKSGGQRRKSILADAVEALFGAIY 123 Query: 128 LDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDGG + + + + ++ R L + +D KT LQE A P Y+V SG H Sbjct: 124 LDGGFDPSRETILRLYRDRLASLPTEAELKDPKTRLQEHLQAGRRPLPRYEVLEVSGQSH 183 Query: 186 DPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 D F V + A+G S+R AEQ AA ++LKR Sbjct: 184 DQTFRVACRLQDAAVTAEGEAGSRRKAEQQAAEQMLKRL 222 >gi|240146505|ref|ZP_04745106.1| ribonuclease III [Roseburia intestinalis L1-82] gi|257201361|gb|EEU99645.1| ribonuclease III [Roseburia intestinalis L1-82] gi|291535139|emb|CBL08251.1| RNAse III [Roseburia intestinalis M50/1] Length = 228 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 69/209 (33%), Positives = 106/209 (50%), Gaps = 5/209 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + L+ RIGY F LL +ALTHSS ++ ERLEFLGD +L ++ S L+ Sbjct: 3 KLQELQNRIGYTFEKEGLLRQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSDFLY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ EG+L+ S+V T + RE+DL ++ + + SI +D +E Sbjct: 63 RNYPDLPEGDLTKLRASIVCEPTLALCTREMDLGDYLLLGKGENQTGGRKRKSILSDALE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 S+I A+YLDGG E A F+ K+ ++ K D+KT LQE + + Y++ Sbjct: 123 SVIGAIYLDGGFEPAKKFIHKFILT-DIEHKKLFYDSKTILQEVVQGNYKESLHYELISE 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDHD +F+V I G +K+ Sbjct: 182 EGPDHDKQFSVEARIGDKVIGAGTGHTKK 210 >gi|83855027|ref|ZP_00948557.1| Ribonuclease III [Sulfitobacter sp. NAS-14.1] gi|83941550|ref|ZP_00954012.1| Ribonuclease III [Sulfitobacter sp. EE-36] gi|83842870|gb|EAP82037.1| Ribonuclease III [Sulfitobacter sp. NAS-14.1] gi|83847370|gb|EAP85245.1| Ribonuclease III [Sulfitobacter sp. EE-36] Length = 228 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 89/219 (40%), Positives = 129/219 (58%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 E RIGY FA LL +A+TH+S+S + ++ +RLEFLGDR+LGL+++ L Sbjct: 6 DLRAFEGRIGYHFAKPELLNRAVTHASMSSANRDDNQRLEFLGDRVLGLVMAEALLKLDP 65 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +A EG+L+ RFN+LV E C++VARE+D+ + +++ ++ D +E++IA Sbjct: 66 AATEGQLAPRFNALVRKEACAEVAREIDMGAVLKLGRSEMLSGGRRKQALLGDAIEAIIA 125 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG + A + + W R ++ + RDAKT LQEWA A+ P Y T R GPD Sbjct: 126 AVYLDGGFDEAKALILRLWGDRVMQVKQDARDAKTALQEWAQARGLPPPAYVQTDRQGPD 185 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H P FT+ I A A SKR AEQ AA +L + Sbjct: 186 HAPVFTITARIENGASAVASAPSKRQAEQAAAKTLLAQL 224 >gi|260771922|ref|ZP_05880840.1| ribonuclease III [Vibrio metschnikovii CIP 69.14] gi|260613214|gb|EEX38415.1| ribonuclease III [Vibrio metschnikovii CIP 69.14] Length = 204 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 75/204 (36%), Positives = 110/204 (53%), Gaps = 6/204 (2%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 E ALTH S + + ERLEFLGD IL +I+ L+ F EG++S +LV T Sbjct: 2 ELALTHRSANGKH---NERLEFLGDSILSFVIADELYRRFPKINEGDMSRMRATLVRGNT 58 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 +++ RE L ++++ K SI AD VE++I A+YLD IE+A + ++ Sbjct: 59 LAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEMARGIILNWY 118 Query: 144 KQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-P 200 + R A+K G ++D KT LQE+ K P Y VT G H+ FTV +++G+A P Sbjct: 119 QPRLDAIKPGVSQKDPKTRLQEFLQGKRSPLPIYIVTNIKGEAHNQEFTVSCDVAGIATP 178 Query: 201 AQGMDCSKRAAEQVAAAEVLKREG 224 G S+R AEQ AA L++ Sbjct: 179 VIGKGTSRRKAEQAAAETALEQLN 202 >gi|304404216|ref|ZP_07385878.1| ribonuclease III [Paenibacillus curdlanolyticus YK9] gi|304347194|gb|EFM13026.1| ribonuclease III [Paenibacillus curdlanolyticus YK9] Length = 232 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 111/228 (48%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L++R+ F LL +A TH+S + ++ E ERLEFLGD +L LL+S Sbjct: 1 MRHDALDQLQQRLLIRFRQPRLLRQAFTHTSYVNEHRGKPIEDNERLEFLGDAVLQLLVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + + EGEL+ S+V + ++ A L L + + + + ++ A Sbjct: 61 EHLFLTYPNRPEGELTRMRASIVCEPSLARFADLLGLGACVLLGRGEEQLGGRHRPALLA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEY 175 D+ E+ + A+YLD G++ F+ + + ++G +D K++LQE A T EY Sbjct: 121 DLFEAFVGAVYLDQGLDRVRLFLTERIFPQIEENGSLLVKDFKSKLQEKAQHGTLGTVEY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ GP HD F V V I G+ +K+ AEQ +A + Sbjct: 181 RIAEERGPAHDREFVVEVRIGDQPYGIGVGRTKKEAEQRSAEAACLKL 228 >gi|188581484|ref|YP_001924929.1| ribonuclease III [Methylobacterium populi BJ001] gi|179344982|gb|ACB80394.1| Ribonuclease III [Methylobacterium populi BJ001] Length = 256 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 89/223 (39%), Positives = 121/223 (54%), Gaps = 2/223 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 + LE RIG+ F + +LL ALTH S + SY+RLEFLGDR+LGL ++ L+ Sbjct: 23 SLAVLEARIGHVFTDPTLLPLALTHVSKAGPSGRVGSYQRLEFLGDRVLGLAVAETLYRA 82 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A+EGELS R LV ETC+ VA ++ + + + +I ADV E++ Sbjct: 83 LPDAEEGELSRRLAGLVRRETCAAVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAI 142 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + A++LD G E V + ++ RDAK+ LQEWA A+ P Y+V RSG Sbjct: 143 LGAVFLDAGYEATRAIVQRSFRPGEDTGAPRGRDAKSALQEWAMARSLAIPVYEVVERSG 202 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PDH P F + V + + P G SKR AEQ AA VL RE I Sbjct: 203 PDHAPVFRIAVRVESIEPGYGEGASKRVAEQEAARAVLDRENI 245 >gi|255004592|ref|ZP_05279393.1| ribonuclease III [Anaplasma marginale str. Virginia] Length = 232 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 79/216 (36%), Positives = 114/216 (52%), Gaps = 1/216 (0%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 + + GY F + LL +ALTH S+S+ +YERLEFLGD +L + IS +L+ F Sbjct: 12 KIYEATGYQFRDLDLLLEALTHPSLSYKSAANYERLEFLGDAVLSMTISEMLYRLFPDDD 71 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ + +LV ++AR + L I +S R S + +E+LI A+Y Sbjct: 72 EGCLTRKRTALVRGSEVVEIARSIGLGELILMSGGERTCGGSDNPGTLENALEALIGAMY 131 Query: 128 LDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +DGG E +F+ K+W RA +D KT LQEW + P YK+ +SGP+H Sbjct: 132 MDGGPEAYRSFIHKHWLARAQHMSYTPPQDPKTALQEWVQGRGWAMPLYKLVSKSGPEHK 191 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F V V I G SK+ AEQ AA +L++ Sbjct: 192 PVFAVEVSIQEHGNVLGTGSSKKLAEQEAAKLMLQK 227 >gi|300717987|ref|YP_003742790.1| ribonuclease III [Erwinia billingiae Eb661] gi|299063823|emb|CAX60943.1| Ribonuclease III [Erwinia billingiae Eb661] Length = 226 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVITRLQRKLGYTFTHQELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGYRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQNVEKLILEWYASRLEQISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG+ P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGTGSSRRK 210 >gi|323491198|ref|ZP_08096384.1| ribonuclease III [Vibrio brasiliensis LMG 20546] gi|323314566|gb|EGA67644.1| ribonuclease III [Vibrio brasiliensis LMG 20546] Length = 225 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 75/213 (35%), Positives = 115/213 (53%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ + LEK++GY F + L+ ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIAKLEKKLGYQFNDAELISLALTHRSA---HGKHNERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE +L +++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD IEV + ++K R A+K G ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDIEVVRGIILSWYKTRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210 G H+ FTV +++G+ P G S+R Sbjct: 177 NIKGEAHNQEFTVSCDVAGIGQPVIGKGTSRRK 209 >gi|291524528|emb|CBK90115.1| RNAse III [Eubacterium rectale DSM 17629] gi|291527954|emb|CBK93540.1| RNAse III [Eubacterium rectale M104/1] Length = 227 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 72/209 (34%), Positives = 111/209 (53%), Gaps = 6/209 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + + +IGY F NR LLE+ALTHSS ++ ERLEFLGD +L ++ S LF Sbjct: 3 DLNEFQSKIGYTFKNRHLLEQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSEFLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ EGEL+ S+V T + + LDL ++R+ SI +D +E Sbjct: 63 INYPQKPEGELTKLRASIVCEPTLALCTKPLDLGKYLRLGRGEDHTGGRKRKSILSDALE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++I A+YLDGG A FV ++ +++ + D+KT LQE + Y++ Sbjct: 123 AVIGAIYLDGGFTNAKEFVLRFIMT-DIENKQLFYDSKTILQELIQGRHEQL-SYELIDE 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SGPDHD +FTV V + G ++G +K+ Sbjct: 181 SGPDHDKQFTVAVLVDGERVSEGEGHTKK 209 >gi|116515099|ref|YP_802728.1| hypothetical protein BCc_163 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285505|sp|Q057R4|RNC_BUCCC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116256953|gb|ABJ90635.1| ribonuclease III [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 226 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 118/226 (52%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + L+K IGY F N +LL+ ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVMKKLQKFIGYTFTNITLLKHALTHRSASSQH---NERLEFLGDSILSFIIAKALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +HF EG +S +LV T +++A E L ++++ +K SI A+ +E Sbjct: 58 HHFPKMNEGGMSRMRATLVRGNTLAEIATEFSLGKYLQLGQGEKKSGGFKRESILANAIE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IA+++LD I + ++K R + ++D KT LQE+ +K P Y + Sbjct: 118 AIIASIFLDSNIYTVERIILYWYKNRFKKMNPTGTKKDPKTRLQEYLQSKHFSLPIYSIG 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FT+ +I GL G+ S+R AEQ AA L R Sbjct: 178 QIYGEAHNQIFTIYCKIDGLSELLIGIGASRRKAEQDAAQNALIRL 223 >gi|242240203|ref|YP_002988384.1| ribonuclease III [Dickeya dadantii Ech703] gi|242132260|gb|ACS86562.1| ribonuclease III [Dickeya dadantii Ech703] Length = 226 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 112/213 (52%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+K++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQKKLGYTFQQYDLLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + K+++ R A+ G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQAVERLILKWYQSRLDAISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRK 210 >gi|167623017|ref|YP_001673311.1| ribonuclease III [Shewanella halifaxensis HAW-EB4] gi|189043349|sp|B0TIV7|RNC_SHEHH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|167353039|gb|ABZ75652.1| Ribonuclease III [Shewanella halifaxensis HAW-EB4] Length = 225 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 123/224 (54%), Gaps = 6/224 (2%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M ++ L + +GY F ++ L++ALTH S S+ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNIPRLCRTLGYEFTEQAFLDQALTHRSASNKH---NERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F +A EG+LS +LV + +++A E L ++++ K SI AD V Sbjct: 58 YHQFPTATEGDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLD IE + V K+++ R + ++D KT LQE P YKV Sbjct: 118 EAIIGAIYLDSEIEKCRSLVLKWYESRLKVIEPINQKDPKTLLQEHLQKFRKPLPVYKVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 G H+ FTV + L+ A G+ S+R AEQ AAA+VL+ Sbjct: 178 HTEGDAHEQTFTVECIVEDLSQAVVGVASSRRKAEQSAAAQVLE 221 >gi|28199176|ref|NP_779490.1| ribonuclease III [Xylella fastidiosa Temecula1] gi|182681907|ref|YP_001830067.1| ribonuclease III [Xylella fastidiosa M23] gi|32129967|sp|Q87C06|RNC_XYLFT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238691044|sp|B2I604|RNC_XYLF2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28057282|gb|AAO29139.1| ribonuclease III [Xylella fastidiosa Temecula1] gi|182632017|gb|ACB92793.1| Ribonuclease III [Xylella fastidiosa M23] gi|307578162|gb|ADN62131.1| ribonuclease III [Xylella fastidiosa subsp. fastidiosa GB514] Length = 227 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 116/226 (51%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + + S ++RIGY F + SLL +AL H S + ERLEFLGD ++ LLI+ LF Sbjct: 1 MISSKASDYQQRIGYVFTDPSLLLQALRHRSAGTPH---NERLEFLGDSVVNLLIAEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + A EG L+ + LV + + +AR + L + + K SI AD VE Sbjct: 58 QRWPRADEGALTRARSELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD + T V +++ AL GK +D KT LQEW A+ P Y++ Sbjct: 118 AVIAAIYLDADLATCRTVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELI 177 Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 F SG H F V + L +G S+R AEQ AA+ + + Sbjct: 178 FESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAASHAIDQL 223 >gi|30250251|ref|NP_842321.1| rnc; ribonuclease III (RNAse III) protein [Nitrosomonas europaea ATCC 19718] gi|81436192|sp|Q820I0|RNC_NITEU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|30181046|emb|CAD86236.1| rnc; ribonuclease III (RNAse III) protein [Nitrosomonas europaea ATCC 19718] Length = 245 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 108/224 (48%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + Y+ +++GY F LL +ALTH S+ + ER EFLGD +L +STLLF Sbjct: 19 LKGRDYAVFLQKLGYTFKQPDLLREALTHRSLGFP---NNERFEFLGDSVLNCAVSTLLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F S EG+L+ + V+ + ++A L + I + RK SI A+ VE Sbjct: 76 KRFPSLPEGDLTRLRANFVNQQALHRLASALGIGELILLGEGERKSGGHHRPSILANAVE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YL+ G V + ++ R L +D+KT LQE+ ++ PEY V Sbjct: 136 AIIGAIYLESGFAVVEQVIVALYEPLIRQLDPDTSGKDSKTLLQEYLQSRKIALPEYSVL 195 Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H F V I G +G S+R AEQ AA + + Sbjct: 196 LAQGDPHAQVFHVECVIPGFGIRTRGEGTSRRRAEQEAARQAYE 239 >gi|94989948|ref|YP_598048.1| ribonuclease III [Streptococcus pyogenes MGAS10270] gi|189043365|sp|Q1JI19|RNC_STRPD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|94543456|gb|ABF33504.1| Ribonuclease III [Streptococcus pyogenes MGAS10270] Length = 230 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 114/226 (50%), Gaps = 9/226 (3%) Query: 7 STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 LE+ + F + +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 2 KQLEELLSTSFDIQFNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEY 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + EG++S + +V E+ + +R ++I++ K +I D+ Sbjct: 62 LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDL 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + AL LD GI+ F+ + + K + +D KT LQE+ AK V +Y+V Sbjct: 122 FEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQAKGDVVIDYQV 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +F V + ++G ++G+ SK+ AEQ AA L + Sbjct: 182 ISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQL 227 >gi|297584006|ref|YP_003699786.1| ribonuclease III [Bacillus selenitireducens MLS10] gi|297142463|gb|ADH99220.1| ribonuclease III [Bacillus selenitireducens MLS10] Length = 261 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 5/227 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 +Y K + + + ++ +A THSS + ++ + ERLEFLGD +L L IS Sbjct: 26 KAKYKQFLKTLHVPYQDDNVFIQAFTHSSYVNEHRIRPHDDNERLEFLGDAVLELAISQY 85 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF F+ EGE++ ++V + +++A L+ ++ + ++ ADV Sbjct: 86 LFKLFEQMSEGEMTKLRAAIVCEPSLAKLADSLEFGDYVLLGKGEEMTGGRKRPALLADV 145 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ I ALY+D G+E F+++Y + S D K++LQE+ + +Y++ Sbjct: 146 FEAFIGALYVDLGMEAVYDFLERYVYPKIHDGSFSHMMDFKSQLQEFIQRENQGQVQYRI 205 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G+ SK+ AEQ+AA E LK+ G Sbjct: 206 VEEKGPAHAREFVSEVMLDDDQLGTGVGKSKKEAEQMAAQEALKKLG 252 >gi|327441090|dbj|BAK17455.1| dsRNA-specific ribonuclease [Solibacillus silvestris StLB046] Length = 253 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 5/221 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 ++ LE + F N+ LL +A THSS + ++ ERLEFLGD +L L +S LF Sbjct: 22 QFEILENEMNIHFQNKDLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EGEL+ S+V + A EL+ F+ + ++ ADV E Sbjct: 82 EKFPHMSEGELTKLRASIVCEPSLVVFANELNFGQFVLLGKGEELTGGRERPALLADVFE 141 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 S + ALYLD G+EV F+++ + + + D K++LQE Y++ Sbjct: 142 SFVGALYLDQGLEVVVAFLERVVFPKVEVGAFSHVMDFKSQLQEIIQQTNNGLLNYEIVD 201 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP H+ F V ++ G SK+ AEQ AA + Sbjct: 202 EKGPAHNRTFVSRVLLNSQELGIGRGKSKKEAEQQAAQSAM 242 >gi|152993835|ref|YP_001359556.1| ribonuclease III [Sulfurovum sp. NBC37-1] gi|189043369|sp|A6QCJ0|RNC_SULNB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|151425696|dbj|BAF73199.1| ribonuclease III [Sulfurovum sp. NBC37-1] Length = 223 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 4/221 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS LEKR+ Y F ++ L+ +ALTH S Y + ERLEFLGD +L L++ LF F Sbjct: 3 DYSQLEKRLNYTFKDKQLIIEALTHKSYKKPY--NNERLEFLGDAVLDLIVGEYLFKKFP 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG LS SLV+ + +AR++DL S+I +S + S+ ++ E++I Sbjct: 61 KSDEGILSKIRASLVNESGFTLLARKIDLGSYIYLSLAEENNNGRDKPSLLSNAFEAIIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL+ G++ A K ++ + +D KT LQE A VTP Y++ SG Sbjct: 121 AVYLEAGLDTAKEISIKLLEECHPKIDLQSLSKDYKTALQELTQATHAVTPGYEMLGSSG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH F + V + A SK+ A+Q AA L+ Sbjct: 181 PDHKKEFEIAVTLDNKTIATAKGKSKKDAQQKAAKIALEAL 221 >gi|317050765|ref|YP_004111881.1| ribonuclease III [Desulfurispirillum indicum S5] gi|316945849|gb|ADU65325.1| ribonuclease III [Desulfurispirillum indicum S5] Length = 247 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 123/228 (53%), Gaps = 6/228 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTL 58 S R + LE+R+GY F + LL ALTH S HS + E+ ERLEFLGD +LGL+IS Sbjct: 7 SQERIAPLEERLGYVFMRKELLHTALTHRSFFHSNRKSAENNERLEFLGDSVLGLIISHY 66 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQAD 117 L F + EG+LS + +V+ +T S+VARE + L ++ + SI AD Sbjct: 67 LLESFPAQSEGKLSKIRSFIVNEKTLSRVAREKIQLGRYLFIGKGEENTGGRNKASILAD 126 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEY 175 +E+++AA+YLDGG+ A + + + + RD KTELQE + + PEY Sbjct: 127 AMEAVVAAIYLDGGLNAARNIILELMSEEIESTVFSNRHRDYKTELQELSQGSLSLAPEY 186 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V GPDH F V + + G SK++AEQ AA +++ Sbjct: 187 RVEREWGPDHQKHFAVSLYLHDQVYGHGEGTSKKSAEQKAARAAMEKL 234 >gi|160880576|ref|YP_001559544.1| ribonuclease III [Clostridium phytofermentans ISDg] gi|160429242|gb|ABX42805.1| Ribonuclease III [Clostridium phytofermentans ISDg] Length = 235 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + E++I YAF LL +ALTHSS ++ + + ERLEFLGD +L L S LF Sbjct: 10 LAEFEQKIDYAFTEPGLLRQALTHSSFANEKRLSKLANNERLEFLGDAVLELTTSEWLFE 69 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG+L+ S+V +T + AREL L +++ + SI +D +ES Sbjct: 70 KHPKMPEGDLTKLRASMVCEQTLALCARELHLGNYVFLGKGEDTTGGRDRDSILSDALES 129 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +I A+YLDGG A F+ Y ++ K D+KT LQE +++ Y++ + Sbjct: 130 IIGAIYLDGGFANAKEFISNYILS-DIEHKKLFYDSKTILQEIVQSEYKKHLSYELLQET 188 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH+ +FTVV ++ + G +K+AAEQ AA + + Sbjct: 189 GPDHNKKFTVVAKMDEESLEIGTGRTKKAAEQEAAYRSILQL 230 >gi|256821980|ref|YP_003145943.1| ribonuclease III [Kangiella koreensis DSM 16069] gi|256795519|gb|ACV26175.1| ribonuclease III [Kangiella koreensis DSM 16069] Length = 229 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 119/222 (53%), Gaps = 6/222 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 L L R+GY F++ SLL+ ALTH S ++ + ERLEFLGD ILG++I+ LF Sbjct: 4 KKLLIERLCNRLGYQFSDPSLLKLALTHRSGANKH---NERLEFLGDAILGMVIAEYLFT 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H A EG+L+ SLV +T +++A+E++L + + K SI AD +E+ Sbjct: 61 HLKKADEGQLTRLRASLVKGKTLAEIAKEIELGECLYLGEGELKSGGFRRASILADALEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +I A+Y D G EVA T + +++R + +D KTELQEW ++ P+Y++ Sbjct: 121 IIGAVYQDSGFEVAKTIILTLYQKRLQNIDLKAVHKDPKTELQEWLQSRKLPLPDYELLK 180 Query: 180 RSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220 +G H F V + G S+R AEQ AA + L Sbjct: 181 VTGDPHKQTFDVACILAEKKVRTHGSGSSRRNAEQQAAEKAL 222 >gi|26988166|ref|NP_743591.1| ribonuclease III [Pseudomonas putida KT2440] gi|148549494|ref|YP_001269596.1| ribonuclease III [Pseudomonas putida F1] gi|37999409|sp|Q88MY5|RNC_PSEPK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043332|sp|A5W8F2|RNC_PSEP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|24982900|gb|AAN67055.1|AE016334_4 ribonuclease III [Pseudomonas putida KT2440] gi|148513552|gb|ABQ80412.1| RNAse III [Pseudomonas putida F1] gi|313500339|gb|ADR61705.1| Rnc [Pseudomonas putida BIRD-1] Length = 229 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 118/232 (50%), Gaps = 11/232 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MSA + LE+++GY F N+ + ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSA-SLAGLERKLGYTFKNQDQMLLALTHRSYA---GRNNERLEFLGDAILNFVAGEALF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A+EG+LS LV ET +++AR DL ++R+ S K SI AD +E Sbjct: 57 ERFPQAREGQLSRLRARLVKGETLARLARGFDLGDYLRLGSGELKSGGFRRESILADALE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD ++ A + + L +D KT LQE+ ++ P Y+V Sbjct: 117 ALIGAIYLDADMDTARERILAWLADEFEGLTLVDTNKDPKTRLQEFLQSRSCELPRYEVV 176 Query: 179 FRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 G H F V E+ + + QG+ S+R AEQVAAA L G+ Sbjct: 177 DIQGEPHCRTFFVECEVVLLNNKSRGQGV--SRRIAEQVAAASALIALGVEN 226 >gi|254293934|ref|YP_003059957.1| ribonuclease III [Hirschia baltica ATCC 49814] gi|254042465|gb|ACT59260.1| ribonuclease III [Hirschia baltica ATCC 49814] Length = 255 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 84/220 (38%), Positives = 130/220 (59%), Gaps = 2/220 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFD 64 +T+++ G F + SLL++A TH+S ERLEFLGDR+LGL+ ++ L F+ Sbjct: 33 ATIQEIAGIKFKDVSLLDRAFTHTSAVPGEAADWSNERLEFLGDRVLGLVAASQLITRFE 92 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ R N+LVS +TC+++A E++L ++ + + + S+ A+V E+LI Sbjct: 93 KEREGGLAPRLNALVSRDTCAKIAAEINLGQYLILDASESSAGGTTKPSLLANVTEALIG 152 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLD G+ + F+ KYWK+ RD K+ LQEWA P Y+ R+GPD Sbjct: 153 AIYLDAGLAASERFIVKYWKEYFKTLTDVPRDPKSALQEWAQGDGRPAPNYENIDRTGPD 212 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FTV V + G+ PA+G SK+ A++ AA+ +L G Sbjct: 213 HAPVFTVEVRVEGVRPAKGEGSSKQEAQRAAASAMLNNVG 252 >gi|92113755|ref|YP_573683.1| ribonuclease III [Chromohalobacter salexigens DSM 3043] gi|91796845|gb|ABE58984.1| RNAse III [Chromohalobacter salexigens DSM 3043] Length = 226 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 83/217 (38%), Positives = 117/217 (53%), Gaps = 6/217 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +RIGY F + S LE ALTH S ++ ERLEFLGD I+ +I LF F A+ Sbjct: 3 ALSRRIGYQFRDTSRLELALTHRSYG---GKNNERLEFLGDSIVNFVIGEALFQRFPQAR 59 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS LV +T +++ARE +L +R+ S K SI AD VE+LI A+Y Sbjct: 60 EGQLSRLRARLVKGQTLAELAREFELGECLRLGSGEMKSGGYRRDSILADGVEALIGAIY 119 Query: 128 LDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD G++VA V ++ R A+ ++D KT LQE+ ++ P Y+V G H Sbjct: 120 LDAGMDVAKARVLSWYATRLEAIDLQDNQKDPKTRLQEFLQSRQAALPRYEVVSVEGEAH 179 Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 FT+ + L G+ S+R AEQ AA + L+ Sbjct: 180 AQVFTIECHVEMLEDHTLGVGSSRRHAEQQAAEKALE 216 >gi|254468787|ref|ZP_05082193.1| ribonuclease III [beta proteobacterium KB13] gi|207087597|gb|EDZ64880.1| ribonuclease III [beta proteobacterium KB13] Length = 228 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L LE + Y F + +LL+K+LTH S E+ ERLEFLGD IL I+ LF Sbjct: 1 MDDLIVKQLEDLLQYKFKDINLLQKSLTHRSFD---GENNERLEFLGDSILNFTIAEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + EG+LS SLV + T +++A ++ L FI + K SI AD E Sbjct: 58 IKFPNIPEGDLSRLRASLVKSGTLAEIAVKIKLGDFIFLGEGELKSAGWRRPSILADTFE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I ALYLDGG+ A TF+ +Y++ + K +D KT LQE +K + P+Y+V Sbjct: 118 AIIGALYLDGGLRPAQTFIHQYFQDWLSEINPAKVDKDPKTSLQELLQSKKLMLPKYEVA 177 Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220 G H F V I+ L+ + S+RAAEQ AA+ L Sbjct: 178 DIKGEAHAQEFIVKCNIAQLSITTEASGSSRRAAEQEAASIAL 220 >gi|167035367|ref|YP_001670598.1| ribonuclease III [Pseudomonas putida GB-1] gi|189043333|sp|B0KV27|RNC_PSEPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|166861855|gb|ABZ00263.1| Ribonuclease III [Pseudomonas putida GB-1] Length = 229 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 118/232 (50%), Gaps = 11/232 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+A + LE+++GY F N+ + ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MTA-SLARLERKLGYTFKNQDQMLLALTHRSYA---GRNNERLEFLGDAILNFVAGEALF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A+EG+LS LV ET +++AR DL ++R+ S K SI AD +E Sbjct: 57 ERFPQAREGQLSRLRARLVKGETLARLARGFDLGEYLRLGSGELKSGGFRRESILADALE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD ++ A V + L +D KT LQE+ ++ P Y+V Sbjct: 117 ALIGAIYLDADMDTARERVLAWLADEFEGLTLVDTNKDPKTRLQEFLQSRSCELPRYEVV 176 Query: 179 FRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 G H F V E+ + + QG+ S+R AEQVAAA L G+ Sbjct: 177 DIQGEPHCRTFFVECEVVLLNNKSRGQGV--SRRIAEQVAAASALIALGVEN 226 >gi|224532223|ref|ZP_03672855.1| ribonuclease III [Borrelia valaisiana VS116] gi|224511688|gb|EEF82094.1| ribonuclease III [Borrelia valaisiana VS116] Length = 245 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 116/226 (51%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59 + S + + F N LL AL+HSS S+ + ERLEFLGD +L L+I+ L Sbjct: 15 KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKSGNNERLEFLGDSVLNLIITDHL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EGELS + +VS ++ S +ARE+DL S+I + + I AD + Sbjct: 75 YKTYPNKSEGELSKARSYIVSEDSLSNIAREIDLGSYILLGRGEESNDGRNKKGILADAI 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + A+YLD G VA FV + R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 135 EAFVGAIYLDSGFSVATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYIQKKYKISPSYKL 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V + + + G SK+ AE AA LK Sbjct: 195 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 240 >gi|119897933|ref|YP_933146.1| ribonuclease III [Azoarcus sp. BH72] gi|119670346|emb|CAL94259.1| putative Ribonuclease III [Azoarcus sp. BH72] Length = 223 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 106/223 (47%), Gaps = 6/223 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++ +G+ FA LL++ALTH S Q + ERLEFLGD IL + S L+ F Sbjct: 1 MSVEHLQRALGHQFAQPELLQQALTHRSFG---QPNNERLEFLGDSILNCVTSIALYERF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +EGELS LV + ++A +L L +R+ K SI AD +E++ Sbjct: 58 GGLREGELSRLRAGLVCQDALHRIAVQLKLGDCLRLGEGELKSGGFRRPSILADALEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA++LD A +D+ + ++ G +D KT LQEW + P Y + + Sbjct: 118 AAVFLDSDFAGAKAVIDRLYAPLLAEVEPGAPAKDPKTALQEWLQGRKSPLPTYVMVQVT 177 Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H F V E+ G S+R AEQ AA L + Sbjct: 178 GEAHAQEFEVACEVEKHKVRTVGRGTSRRIAEQRAAELALAQL 220 >gi|218530503|ref|YP_002421319.1| ribonuclease III [Methylobacterium chloromethanicum CM4] gi|218522806|gb|ACK83391.1| Ribonuclease III [Methylobacterium chloromethanicum CM4] Length = 256 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 91/223 (40%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 + LE RIG+ FA+ +LL ALTH S + SY+RLEFLGDR+LGL ++ L+ Sbjct: 23 SLAVLEARIGHVFADPTLLPLALTHVSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKA 82 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A+EGELS R LV ETC+ VA ++ + + + +I ADV E++ Sbjct: 83 LPGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIRTGGRRNQTILADVCEAI 142 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + A++LD G E V + ++ + RDAK+ LQEWA A+ P Y+V RSG Sbjct: 143 LGAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSG 202 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PDH P F + + G+ P G SKR AEQ AA VL REGI Sbjct: 203 PDHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245 >gi|254474637|ref|ZP_05088023.1| ribonuclease III [Ruegeria sp. R11] gi|214028880|gb|EEB69715.1| ribonuclease III [Ruegeria sp. R11] Length = 222 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 87/217 (40%), Positives = 126/217 (58%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 E RIGY F +LL +ALTH+S+S ++ +RLEFLGDR+LGL+++T L A Sbjct: 2 HAFEARIGYQFTEPALLVRALTHASVSSPNRKDNQRLEFLGDRVLGLVMATALLETDKDA 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ RFN+LV ETC+ VAR++D+ S +++ ++ D +E++IAA+ Sbjct: 62 SEGQLAPRFNALVRKETCADVARQIDVGSVLKLGRSETLSGGRRKMALLGDAMEAVIAAV 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y DGG + A + + W R + RDAKT LQE+A A+ P Y + R GPDH Sbjct: 122 YKDGGFDAAQELILRLWGDRIGRVEADARDAKTTLQEFAQARGEQPPTYVLVERKGPDHQ 181 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P FT+ V++ + SKR AEQ AA +L R Sbjct: 182 PEFTISVQLQDGTEGRATAGSKRQAEQAAAKSLLARL 218 >gi|216263528|ref|ZP_03435523.1| ribonuclease III [Borrelia afzelii ACA-1] gi|215980372|gb|EEC21193.1| ribonuclease III [Borrelia afzelii ACA-1] Length = 245 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 117/226 (51%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59 + S + + F N LL AL+HSS S+ ++ ERLEFLGD +L L+I+ L Sbjct: 15 KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKSDNNERLEFLGDSVLNLIITDHL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EGELS + +VS ++ S +ARE+DL S+I + + I AD + Sbjct: 75 YKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAI 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + A+YLD G +A FV + R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 135 EAFVGAIYLDSGFSIATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPNYKL 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V + + + G SK+ AE AA LK Sbjct: 195 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 240 >gi|54297783|ref|YP_124152.1| ribonuclease III [Legionella pneumophila str. Paris] gi|148359410|ref|YP_001250617.1| ribonuclease III [Legionella pneumophila str. Corby] gi|296107456|ref|YP_003619157.1| ribonuclease III [Legionella pneumophila 2300/99 Alcoy] gi|81370372|sp|Q5X446|RNC_LEGPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043325|sp|A5ID21|RNC_LEGPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|53751568|emb|CAH12986.1| hypothetical protein lpp1834 [Legionella pneumophila str. Paris] gi|148281183|gb|ABQ55271.1| ribonuclease III [Legionella pneumophila str. Corby] gi|295649358|gb|ADG25205.1| ribonuclease III [Legionella pneumophila 2300/99 Alcoy] Length = 224 Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + L +R+ Y F N + L++ALTH S ++YER EFLGD IL +I+ LFN Sbjct: 2 KINLERLCRRLNYHFNNIAYLKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFNR 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+LS + LV E +++ARE+ L ++ + + TSI AD +E++ Sbjct: 59 FPLHSEGQLSRLRSFLVKGEMLAEIAREIGLGDYLFLGQGELRSGGFRRTSILADALEAI 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 +AA+YLDGG+ A + + R +DAKT+LQE+ A PEY +T Sbjct: 119 LAAIYLDGGMTAAKQIILMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKI 178 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G +H F V I G+ A G ++R AEQ+AA +L++ Sbjct: 179 EGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLEQL 222 >gi|315179118|gb|ADT86032.1| ribonuclease III [Vibrio furnissii NCTC 11218] Length = 202 Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats. Identities = 76/201 (37%), Positives = 110/201 (54%), Gaps = 6/201 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 ALTH S + + ERLEFLGD IL +I+ L++ F EG++S +LV T + Sbjct: 2 ALTHRSANGKH---NERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGNTLA 58 Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 ++ RE DL ++++ K SI AD VE++I A+YLD IEVA V +++ Sbjct: 59 ELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEVARATVLSWYQS 118 Query: 146 R--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQ 202 R A+K G ++D KT LQE+ + P Y VT G H+ FTV +I+G+ P Sbjct: 119 RLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHNQEFTVACDIAGIGAPVI 178 Query: 203 GMDCSKRAAEQVAAAEVLKRE 223 G S+R AEQ AA L++ Sbjct: 179 GKGTSRRKAEQAAAETALEQL 199 >gi|251797476|ref|YP_003012207.1| ribonuclease III [Paenibacillus sp. JDR-2] gi|247545102|gb|ACT02121.1| ribonuclease III [Paenibacillus sp. JDR-2] Length = 231 Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L+ R+ F LL++A TH+S + ++ E ERLEFLGD +L LL+S Sbjct: 1 MKRDSINELQTRLQLRFKQLKLLKQAFTHTSYVNEHKHGTIEHNERLEFLGDAVLQLLVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + + EGEL+ S+V + +Q A L+L + I++ + ++ A Sbjct: 61 EYLFAAYPNRPEGELTRMRASVVCEPSLAQFAERLELGAHIQLGRGEEQLGGRQRPALLA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPE 174 D+ E+ + A++LD GIE F++ + + G +D K++LQE A K E Sbjct: 121 DLFEAFVGAIFLDAGIERTRAFLETHMFPYIESNDYGLLVKDFKSKLQERAQHKGLGAVE 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y++ GP HD F V V I + G +K+ AEQ AAA + Sbjct: 181 YRIMEERGPAHDREFVVEVCIGEIPYGNGSGRTKKEAEQRAAAVAWQ 227 >gi|269958484|ref|YP_003328271.1| ribonuclease 3 [Anaplasma centrale str. Israel] gi|269848313|gb|ACZ48957.1| ribonuclease 3 [Anaplasma centrale str. Israel] Length = 249 Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats. Identities = 79/216 (36%), Positives = 115/216 (53%), Gaps = 1/216 (0%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 + + GY F + LL ++LTH S+S +YERLEFLGD +L + +S +L+ F Sbjct: 16 RVYEVTGYRFRDLDLLLESLTHPSLSRESAANYERLEFLGDAVLSMAVSEMLYRLFPDDD 75 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ + +LV ++AR + L I +SS S + +E+LI A+Y Sbjct: 76 EGCLTQKRTALVRGSEVVEIARSIGLGGLILMSSGEMSCGGSDNPGTLENALEALIGAMY 135 Query: 128 LDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +DG E F+ ++W RA + S +D KT LQEW ++ P YK+ +SGP+H Sbjct: 136 IDGSSEDYKNFIREHWFSRAQRMSSAPPQDPKTALQEWVQSRGWTVPLYKLVSKSGPEHK 195 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F V V I G G SK+ AEQ AA +LKR Sbjct: 196 PVFAVEVSIQGHGSILGTGSSKKLAEQEAAKLMLKR 231 >gi|331269661|ref|YP_004396153.1| ribonuclease III [Clostridium botulinum BKT015925] gi|329126211|gb|AEB76156.1| Ribonuclease III [Clostridium botulinum BKT015925] Length = 236 Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 115/220 (52%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63 + +E ++ F + +LL+ ALTHSS + + S ERLEFLGD IL L IS LL+N + Sbjct: 9 LNEVENKLNVKFNDINLLDTALTHSSFVNENKNIYSNERLEFLGDSILQLCISELLYNKY 68 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG L+ + +V + +VA+E ++ +I +S TSI +D VE++I Sbjct: 69 EQEPEGFLTKKRALIVCGNSLHEVAKEWNIGKYINMSKGEEMTGGRTRTSILSDCVEAII 128 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++YLD G EVA F+ + + K+ + D KT+LQE EY++ Sbjct: 129 ASIYLDQGYEVAKKFIIDNFNEIIQKANSDQIILDYKTKLQETIQKFGDYNIEYRLVSFD 188 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H +F V I G SK+ AEQ AA E LK Sbjct: 189 GPPHRRKFITEVLIDSEVKGVGEGYSKKEAEQNAAKEALK 228 >gi|152971423|ref|YP_001336532.1| ribonuclease III [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580271|ref|YP_002237090.1| ribonuclease III [Klebsiella pneumoniae 342] gi|288934052|ref|YP_003438111.1| ribonuclease III [Klebsiella variicola At-22] gi|189043322|sp|A6TCI1|RNC_KLEP7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741374|sp|B5XNH0|RNC_KLEP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|150956272|gb|ABR78302.1| ribonuclease III [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569329|gb|ACI11105.1| ribonuclease III [Klebsiella pneumoniae 342] gi|288888781|gb|ADC57099.1| ribonuclease III [Klebsiella variicola At-22] Length = 226 Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFHHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQNVERLILSWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|254561469|ref|YP_003068564.1| ribonuclease III [Methylobacterium extorquens DM4] gi|254268747|emb|CAX24708.1| ribonuclease III [Methylobacterium extorquens DM4] Length = 256 Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats. Identities = 91/223 (40%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 + LE RIG+ FA+ +LL ALTH S + SY+RLEFLGDR+LGL ++ L+ Sbjct: 23 SLAVLEARIGHVFADPTLLPLALTHVSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKA 82 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A+EGELS R LV ETC+ VA ++ + + + +I ADV E++ Sbjct: 83 LPGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAI 142 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + A++LD G E V + ++ + RDAK+ LQEWA A+ P Y+V RSG Sbjct: 143 LGAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSG 202 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PDH P F + + G+ P G SKR AEQ AA VL REGI Sbjct: 203 PDHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245 >gi|307132118|ref|YP_003884134.1| RNase III [Dickeya dadantii 3937] gi|306529647|gb|ADM99577.1| RNase III [Dickeya dadantii 3937] Length = 226 Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 111/213 (52%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+K++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQKKLGYTFQQYDLLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSNIQTVERLILQWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRK 210 >gi|163744855|ref|ZP_02152215.1| ribonuclease III [Oceanibulbus indolifex HEL-45] gi|161381673|gb|EDQ06082.1| ribonuclease III [Oceanibulbus indolifex HEL-45] Length = 228 Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats. Identities = 92/219 (42%), Positives = 129/219 (58%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 E RIG++FA LL +A+TH+S+S + ++ +RLEFLGDR+LGL+++ L Sbjct: 6 DLKAFEARIGHSFAKPELLVRAVTHASMSSANRDDNQRLEFLGDRVLGLVMAEALLALDP 65 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EG+L+ RFN+LV ETC+ VARE+DL +++ ++ D +E++IA Sbjct: 66 GATEGQLAPRFNALVRKETCADVAREIDLGKVLKLGRSEMISGGRRKQALLGDAIEAVIA 125 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLD G E A V + W R + RDAKT LQEWA A+ + P Y T RSGPD Sbjct: 126 AVYLDSGFEAAKGLVLRLWGDRLKTVKEDARDAKTALQEWAQARGLMPPRYVQTDRSGPD 185 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H P FT+ + A A SKRAAEQ AA +L++ Sbjct: 186 HAPVFTITARLDNGAEAAATAPSKRAAEQAAATTLLRQL 224 >gi|163851697|ref|YP_001639740.1| ribonuclease III [Methylobacterium extorquens PA1] gi|163663302|gb|ABY30669.1| Ribonuclease III [Methylobacterium extorquens PA1] Length = 256 Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats. Identities = 91/223 (40%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 + LE RIG+ FA+ +LL ALTH S + SY+RLEFLGDR+LGL ++ L+ Sbjct: 23 SLAVLEARIGHVFADPTLLPLALTHVSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKA 82 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A+EGELS R LV ETC+ VA ++ + + + +I ADV E++ Sbjct: 83 LPGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAI 142 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + A++LD G E V + ++ + RDAK+ LQEWA A+ P Y+V RSG Sbjct: 143 LGAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSG 202 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PDH P F + + G+ P G SKR AEQ AA VL REGI Sbjct: 203 PDHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245 >gi|240138862|ref|YP_002963337.1| ribonuclease III [Methylobacterium extorquens AM1] gi|240008834|gb|ACS40060.1| ribonuclease III [Methylobacterium extorquens AM1] Length = 256 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 91/223 (40%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 + LE RIG+ FA+ +LL ALTH S + SY+RLEFLGDR+LGL ++ L+ Sbjct: 23 SLAVLEARIGHVFADPTLLPLALTHVSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKA 82 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A+EGELS R LV ETC+ VA ++ + + + +I ADV E++ Sbjct: 83 LPGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAI 142 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + A++LD G E V + ++ + RDAK+ LQEWA A+ P Y+V RSG Sbjct: 143 LGAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSG 202 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PDH P F + + G+ P G SKR AEQ AA VL REGI Sbjct: 203 PDHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245 >gi|15615052|ref|NP_243355.1| ribonuclease III [Bacillus halodurans C-125] gi|20139354|sp|Q9KA05|RNC_BACHD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|10175109|dbj|BAB06208.1| ribonuclease III [Bacillus halodurans C-125] Length = 263 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 64/220 (29%), Positives = 106/220 (48%), Gaps = 5/220 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + L + + FAN+ LL +A THSS + ++ + ERLEFLGD +L L +S L+ Sbjct: 35 FDELLRTLNLTFANKKLLVQAFTHSSYVNEHRIQSCKDNERLEFLGDAVLELAVSQYLYK 94 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F+ EG+++ S+V + +Q+A EL + + ++ ADV ES Sbjct: 95 AFEQMSEGDMTKLRASIVCEPSLAQLAEELHFGELVLLGKGEEMTGGRKRPALLADVFES 154 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + ALYLD G++ F+++ + + D K++LQE+ Y++ Sbjct: 155 FVGALYLDQGMDAVYLFLERTIYPKISEGAFSHMMDFKSQLQEFIQRDNLGHIHYEIVQE 214 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP H+ F V ++ G SK+ AEQ AA + L Sbjct: 215 RGPAHNREFVSEVVLNNETLGVGTGRSKKEAEQHAAQQAL 254 >gi|225419776|ref|ZP_03762079.1| hypothetical protein CLOSTASPAR_06114 [Clostridium asparagiforme DSM 15981] gi|225041580|gb|EEG51826.1| hypothetical protein CLOSTASPAR_06114 [Clostridium asparagiforme DSM 15981] Length = 232 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 114/227 (50%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ LE+ I Y F L +ALTHSS ++ ++ ERLEFLGD +L ++ S Sbjct: 1 MNR-NLQELERTICYQFKEHGLFVQALTHSSYANEHRWNHSRCNERLEFLGDAVLEIVTS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L++ ++ EG+L+ S+V T + A ++ L ++ + S+ + Sbjct: 60 DFLYHKYEDLPEGDLTKIRASIVCEPTLAYCAGDISLGEYLLLGKGEEATGGRSRNSVVS 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+LI A+YLDGG A F+ ++ ++ + D+KT LQE ++ Y+ Sbjct: 120 DAMEALIGAIYLDGGFANAKEFIHRFIL-NDIEHKQLFYDSKTILQEMVQSRSSEGLSYE 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GPDH+ F V I G +G +K+AAEQVAA + + Sbjct: 179 ILREEGPDHNKSFEVCARIGGAEIGRGTGRTKKAAEQVAAYNGILKL 225 >gi|218780584|ref|YP_002431902.1| ribonuclease III [Desulfatibacillum alkenivorans AK-01] gi|218761968|gb|ACL04434.1| Ribonuclease III [Desulfatibacillum alkenivorans AK-01] Length = 535 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 112/222 (50%), Gaps = 6/222 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LE+ +GY F LL +A+ HSS + + + ERLEFLGD +L L +S +L + + Sbjct: 309 LEEALGYNFKTPELLLEAMCHSSYVNEHPDCTWTHNERLEFLGDAVLNLAVSDMLMSKYS 368 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG+LS SLV+ +++AR L + + + + SI AD +E++ Sbjct: 369 ENREGDLSRLRASLVNEGQLAEIARSLGIGQHLLLGKGEARGRGWDKNSILADSLEAVFG 428 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +Y D G A + + + +D KT LQE+A +K +TP Y++ G Sbjct: 429 GIYSDSGYADAFKVIKNLIAPLIPEEVAVAAAQDYKTRLQEYAQSKLRITPSYELIREFG 488 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH+ F ++ +QG SK+AAEQ AA EVL G Sbjct: 489 PDHEKTFVAQATVNKEFTSQGKGRSKKAAEQDAAREVLILLG 530 >gi|310779301|ref|YP_003967634.1| RNAse III [Ilyobacter polytropus DSM 2926] gi|309748624|gb|ADO83286.1| RNAse III [Ilyobacter polytropus DSM 2926] Length = 237 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 6/231 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M + LEK++ Y F ++ LL+ AL H S + + + ERLE LGD +L L+++ Sbjct: 1 MGESCFVELEKKLKYTFKSKKLLKHALIHRSYGNENWDYKKVNNERLELLGDAVLDLVVT 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ HF S+ EG+L+ + +VS ++++R+L + + + +S +SI Sbjct: 61 EYLYLHFTSSSEGDLAKLKSMIVSEPVLAKISRKLGVGNHLLLSKGEELTGGRDRSSILG 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPE 174 DV E+++ A+YLD +A F K+ K+ + + D KT LQE++ ++ V P Sbjct: 121 DVFEAILGAVYLDSDFMLAKEFAIKHLKRFIDHIDENEDLIDFKTILQEFSQREYKVIPS 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 Y+V GPDH F + V+I+ G +K++AEQ AA ++ G+ Sbjct: 181 YEVIKEMGPDHRKSFEIAVKINDELMGLGTGRNKKSAEQSAARNACRKLGV 231 >gi|50913818|ref|YP_059790.1| ribonuclease III [Streptococcus pyogenes MGAS10394] gi|56808931|ref|ZP_00366639.1| COG0571: dsRNA-specific ribonuclease [Streptococcus pyogenes M49 591] gi|139474237|ref|YP_001128953.1| ribonuclease III [Streptococcus pyogenes str. Manfredo] gi|209559002|ref|YP_002285474.1| ribonuclease III [Streptococcus pyogenes NZ131] gi|255591218|ref|XP_002535468.1| ribonuclease III, putative [Ricinus communis] gi|306827819|ref|ZP_07461089.1| ribonuclease III [Streptococcus pyogenes ATCC 10782] gi|73917584|sp|Q5XDA6|RNC_STRP6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043367|sp|A2RFW8|RNC_STRPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741379|sp|B5XKB7|RNC_STRPZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|50902892|gb|AAT86607.1| Ribonuclease III [Streptococcus pyogenes MGAS10394] gi|134272484|emb|CAM30747.1| ribonuclease III [Streptococcus pyogenes str. Manfredo] gi|209540203|gb|ACI60779.1| Ribonuclease III [Streptococcus pyogenes NZ131] gi|223523016|gb|EEF26915.1| ribonuclease III, putative [Ricinus communis] gi|304429989|gb|EFM33028.1| ribonuclease III [Streptococcus pyogenes ATCC 10782] Length = 230 Score = 254 bits (651), Expect = 5e-66, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 113/226 (50%), Gaps = 9/226 (3%) Query: 7 STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 LE+ + F + +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 2 KQLEELLSTSFDIQFNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEY 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + EG++S + +V E+ + +R ++I++ K +I D+ Sbjct: 62 LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDL 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + AL LD GI+ F+ + + K + +D KT LQE+ K V +Y+V Sbjct: 122 FEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQTKGDVVIDYQV 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +F V + ++G ++G+ SK+ AEQ AA L + Sbjct: 182 ISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQL 227 >gi|261253900|ref|ZP_05946473.1| ribonuclease III [Vibrio orientalis CIP 102891] gi|260937291|gb|EEX93280.1| ribonuclease III [Vibrio orientalis CIP 102891] Length = 225 Score = 254 bits (651), Expect = 5e-66, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 6/206 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LEK++GY F + L+ ALTH S + + ERLEFLGD IL +I+ L++ F Sbjct: 7 KLEKKLGYQFNDAELISLALTHRSANGKH---NERLEFLGDSILSFVIADDLYHRFPKVN 63 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG++S +LV T +++ RE +L +++ K SI AD VE++I A+Y Sbjct: 64 EGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVEAIIGAIY 123 Query: 128 LDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD IEV + ++K R A+K G ++D KT LQE+ + P Y VT G H Sbjct: 124 LDSDIEVVRGIILSWYKTRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVTNIKGEAH 183 Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRA 210 + FTV E++G+ P G S+R Sbjct: 184 NQEFTVSCEVAGIGQPVIGKGTSRRK 209 >gi|71274462|ref|ZP_00650750.1| Ribonuclease III [Xylella fastidiosa Dixon] gi|71901683|ref|ZP_00683759.1| Ribonuclease III [Xylella fastidiosa Ann-1] gi|170730564|ref|YP_001775997.1| ribonuclease III [Xylella fastidiosa M12] gi|238687923|sp|B0U3D8|RNC_XYLFM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71164194|gb|EAO13908.1| Ribonuclease III [Xylella fastidiosa Dixon] gi|71728553|gb|EAO30708.1| Ribonuclease III [Xylella fastidiosa Ann-1] gi|167965357|gb|ACA12367.1| Ribonuclease III [Xylella fastidiosa M12] Length = 227 Score = 254 bits (651), Expect = 5e-66, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 116/226 (51%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + + S ++RIGY F + SLL +AL H S + ERLEFLGD ++ LLI+ LF Sbjct: 1 MISSKASDYQQRIGYVFTDPSLLLQALRHCSAGTPH---NERLEFLGDSVVNLLIAEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + A EG L+ + LV + + +AR + L + + K SI AD VE Sbjct: 58 QRWPRADEGALTRARSELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD + T V +++ AL GK +D KT LQEW A+ P Y++ Sbjct: 118 AVIAAIYLDADLATCRTVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELI 177 Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 F SG H F V + L +G S+R AEQ AA+ + + Sbjct: 178 FESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAASHAINQL 223 >gi|325275444|ref|ZP_08141375.1| ribonuclease III [Pseudomonas sp. TJI-51] gi|324099420|gb|EGB97335.1| ribonuclease III [Pseudomonas sp. TJI-51] Length = 229 Score = 254 bits (651), Expect = 5e-66, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 118/232 (50%), Gaps = 11/232 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MSA + LE+++GY F N+ + ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSA-SLARLERKLGYTFKNQDQMLLALTHRSYA---GRNNERLEFLGDAILNFVAGEALF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A+EG+LS LV ET +++AR DL ++R+ S K SI AD +E Sbjct: 57 ERFPQAREGQLSRLRARLVKGETLARLARGFDLGEYLRLGSGELKSGGFRRESILADALE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD +E A V + L +D KT LQE+ ++ P Y+V Sbjct: 117 ALIGAIYLDADMETARERVLAWLANEFEGLTLVDTNKDPKTRLQEFLQSRSCELPRYEVV 176 Query: 179 FRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 G H F V E+ + + QG+ S+R AEQVAAA L G+ Sbjct: 177 DIQGEPHCRTFFVECEVVLLNNKSRGQGV--SRRIAEQVAAASALIALGVEN 226 >gi|225570731|ref|ZP_03779754.1| hypothetical protein CLOHYLEM_06832 [Clostridium hylemonae DSM 15053] gi|225160474|gb|EEG73093.1| hypothetical protein CLOHYLEM_06832 [Clostridium hylemonae DSM 15053] Length = 231 Score = 254 bits (651), Expect = 5e-66, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 112/223 (50%), Gaps = 5/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 LEKRIGY F LL+KA+ HSS ++ E ERLEFLGD +L L+ S LF Sbjct: 4 DLKQLEKRIGYTFKEFGLLKKAMMHSSYANEQHLHKYECNERLEFLGDAVLELVSSEFLF 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EGEL+ S+V + AREL + F+ + SI +D +E Sbjct: 64 YEHAKMPEGELTKTRASMVCEPALAFCARELQIGDFLLLGKGEDATGGRKRESITSDAME 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI A+Y+DGG A F++++ + L++ K D+KT LQE A F Y + Sbjct: 124 ALIGAIYIDGGFANAKEFIERFILK-DLENRKLFFDSKTILQEIVQANFKDAITYHLIGE 182 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V V I G +K+AAEQ AA + + + Sbjct: 183 EGPDHDKSFLVAVHIGEDEYGIGRGRTKKAAEQEAAYQSILKL 225 >gi|224534577|ref|ZP_03675153.1| ribonuclease III [Borrelia spielmanii A14S] gi|224514254|gb|EEF84572.1| ribonuclease III [Borrelia spielmanii A14S] Length = 245 Score = 254 bits (651), Expect = 5e-66, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59 + S + + F N LL AL+HSS S+ + ERLEFLGD +L L+I+ L Sbjct: 15 KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKSGNNERLEFLGDSVLNLIITDHL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EGELS + +VS ++ S +ARE+DL S+I + + I AD + Sbjct: 75 YKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAI 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + A+YLD G +A FV + R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 135 EAFVGAIYLDSGFSIATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V + + + G SK+ AE AA LK Sbjct: 195 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 240 >gi|253578969|ref|ZP_04856240.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849912|gb|EES77871.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 227 Score = 254 bits (651), Expect = 5e-66, Method: Composition-based stats. Identities = 75/213 (35%), Positives = 107/213 (50%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ + LE+ IGY F N+ L +ALTHSS ++ + S ERLEFLGD +L L+ S Sbjct: 1 MNR-KTEELEEIIGYHFKNKHYLTQALTHSSYANEKKLGKLGSNERLEFLGDAVLELISS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ F EGEL+ + SLV + + ARE L F+ + SI + Sbjct: 60 DYLYARFTQIPEGELTKKRASLVCEPSLAYCAREFGLPQFLLLGKGEDMTGGRNRDSIVS 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D E+L+ A+YLDGG A FV + ++ + D+KT LQE EY Sbjct: 120 DATEALLGAIYLDGGFANAKEFVLNFIL-NDIEHKQLFYDSKTILQEIVQENGTQPVEYI 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 +T GPDH+ FTV ++G QG +K+ Sbjct: 179 LTKEEGPDHNKNFTVEARVNGKVMGQGSGHTKK 211 >gi|190571469|ref|YP_001975827.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|238056573|sp|B3CMS0|RNC_WOLPP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|190357741|emb|CAQ55192.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 230 Score = 254 bits (651), Expect = 5e-66, Method: Composition-based stats. Identities = 79/219 (36%), Positives = 124/219 (56%), Gaps = 4/219 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHF 63 T+ K I Y F + ++LE+ALTH S++ E YERLEFLGD +L +++S +LF F Sbjct: 7 TISKVINYKFTDYAILEEALTHPSVNKRNSEDQVVSYERLEFLGDSVLNMVVSVMLFKMF 66 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 KEG L+ R LV T + VA+E++L +FI +++ R + + +E+LI Sbjct: 67 PEEKEGALAKRKTDLVCGSTIANVAKEIELGNFIIMNNSERCNGGKCNLKNLENSLEALI 126 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+Y+DGG+E F+ ++W++ A +D KT LQEW P+Y++ ++GP Sbjct: 127 GAIYIDGGLESVEKFIIRHWEKLAKDILDPPQDPKTSLQEWTQRNKLPLPKYELVKQTGP 186 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H+P FT+ V I SK+ AEQ AA +L++ Sbjct: 187 AHNPEFTISVCIESYDKVSACAPSKKIAEQKAAELILEK 225 >gi|54294754|ref|YP_127169.1| hypothetical protein lpl1831 [Legionella pneumophila str. Lens] gi|81368418|sp|Q5WVI4|RNC_LEGPL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|53754586|emb|CAH16070.1| hypothetical protein lpl1831 [Legionella pneumophila str. Lens] Length = 224 Score = 254 bits (651), Expect = 5e-66, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + L +R+ Y F N + L++ALTH S ++YER EFLGD IL +I+ LFN Sbjct: 2 KINLERLCRRLNYHFNNMAYLKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFNR 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+LS + LV E +++ARE+ L ++ + + TSI AD +E++ Sbjct: 59 FPLHSEGQLSRLRSFLVKGEMLAEIAREIGLGDYLFLGQGELRSGGFRRTSILADALEAI 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 +AA+YLDGG+ A + + R +DAKT+LQE+ A PEY +T Sbjct: 119 LAAIYLDGGMTAAKQIILMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKV 178 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G +H F V I G+ A G ++R AEQ+AA +L++ Sbjct: 179 EGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLEQL 222 >gi|226951500|ref|ZP_03821964.1| ds RNA ribonuclease III [Acinetobacter sp. ATCC 27244] gi|294651022|ref|ZP_06728362.1| ribonuclease III [Acinetobacter haemolyticus ATCC 19194] gi|226837793|gb|EEH70176.1| ds RNA ribonuclease III [Acinetobacter sp. ATCC 27244] gi|292823123|gb|EFF81986.1| ribonuclease III [Acinetobacter haemolyticus ATCC 19194] Length = 231 Score = 254 bits (651), Expect = 5e-66, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L + L+ RIGY F LL+ ALTH S+SH + +YERLEFLGD +LG++I+ L++ Sbjct: 7 NKLNDTRLQARIGYQFQQIDLLKLALTHRSVSHKH--NYERLEFLGDSLLGMIIANYLYH 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EG L+ +LV E ++A +L L+ + +S+ K SI AD VE+ Sbjct: 65 TYPTENEGRLTRMRATLVRQEALGKIANDLQLSRSLILSTGELKSGGHHRESILADTVEA 124 Query: 122 LIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +I A+Y+D + + V K+++ ++ +D K+ LQE+ A+ P Y+V Sbjct: 125 IIGAIYIDSNDLNLLQGIVLKWYEPYFDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVV 184 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 G + F V + GL QG S+R AEQ AAAE+LK Sbjct: 185 DIQGDAPNQHFKVECLVDGLPKIQGEGSSRRFAEQTAAAEILK 227 >gi|51892591|ref|YP_075282.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863] gi|81388984|sp|Q67PF5|RNC_SYMTH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|51856280|dbj|BAD40438.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863] Length = 235 Score = 254 bits (651), Expect = 5e-66, Method: Composition-based stats. Identities = 73/214 (34%), Positives = 112/214 (52%), Gaps = 5/214 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSAKE 68 + +GY F + SLL +ALTH++ ++ + + ERLEFLGD +LG++I+ L+ + E Sbjct: 16 EALGYEFRDESLLLEALTHTTYANEHPRARANERLEFLGDSVLGMVIAAHLYERYPDLPE 75 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GEL+ ++V + ++ AR L + +R S +D E+++ ALYL Sbjct: 76 GELTKIRAAVVCEPSLAERARVLGIGRHMRFGRGEAVS-GRDRDSTLSDAFEAVVGALYL 134 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 DGG+E A FV + Q A + G R D KT+LQE + P+Y++ GP H Sbjct: 135 DGGLEAAQRFVLRELGQLVEAARQGLVRVDYKTQLQEQLQRQGAAAPQYRLLVEEGPAHL 194 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 RF V V G G +K+ AEQ AA + L Sbjct: 195 RRFQVGVYFEGRLLGTGWGRNKKEAEQEAARQAL 228 >gi|32129971|sp|Q9PB98|RNC_XYLFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 227 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 116/226 (51%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + + S ++RIGY F + SLL +AL H S + ERLEFLGD ++ LLI+ LF Sbjct: 1 MISSKASDYQQRIGYVFTDPSLLLQALRHCSAGTPH---NERLEFLGDSVVNLLIAEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + A EG L+ + LV + + +AR + L + + K SI AD VE Sbjct: 58 QRWPRADEGALTRARSELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD + T V +++ AL GK +D KT LQEW A+ P Y++ Sbjct: 118 AVIAAIYLDADLATCRTVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELI 177 Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 F SG H F V + L +G S+R AEQ AA+ + + Sbjct: 178 FESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAASHAIDQL 223 >gi|197105333|ref|YP_002130710.1| ribonuclease III [Phenylobacterium zucineum HLK1] gi|238690159|sp|B4RCU4|RNC_PHEZH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|196478753|gb|ACG78281.1| ribonuclease III [Phenylobacterium zucineum HLK1] Length = 238 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 89/223 (39%), Positives = 129/223 (57%), Gaps = 4/223 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + LE+RIGY F +R LLE+ALTH+S+ + ERLEFLGDR+L L + L Sbjct: 8 VAELERRIGYVFTDRDLLERALTHASVGDGARAVRHNERLEFLGDRVLNLCAAERLMALD 67 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A+EGE+S SLV+ C++ A+ L +R+S+ K ++ D E+LI Sbjct: 68 PDAREGEMSRLLASLVNYHACARAAKRAGLQEALRLSASATKVGARKSDAVLGDACEALI 127 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AALY+DGG+E A F K+W + + + R +D KT+LQEW P Y++ + G Sbjct: 128 AALYIDGGLETARAFFLKFWDEEFARLDEPRAKDPKTQLQEWVQGMGLPLPTYEIVSQEG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV-LKREG 224 P H P FTV V+++G +G S++AAE+ AA + LKREG Sbjct: 188 PPHAPSFTVEVQVAGFGAERGEGRSRQAAEKAAAQCMLLKREG 230 >gi|258645853|ref|ZP_05733322.1| ribonuclease III [Dialister invisus DSM 15470] gi|260403226|gb|EEW96773.1| ribonuclease III [Dialister invisus DSM 15470] Length = 249 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 6/212 (2%) Query: 18 ANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 N LL ALTH+S ++ ++ ERLEFLGD +L L + LF F EG+L+ Sbjct: 27 HNMELLNVALTHTSYANEHRNLKVHDNERLEFLGDAVLDLAVGDYLFRRFPEWPEGDLTR 86 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S+V C++ A + ++ + SI + ES+I A+YLD G E Sbjct: 87 AKASVVCKPACAECAANFHVGDYMLLGRGEEMSGGRTRVSILGNAFESVIGAVYLDNGYE 146 Query: 134 VAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 VA F+ + ++ + G + D K++LQE A V Y+V GPDHD + Sbjct: 147 VAAKFILGHMQKFLDLVDQGIYDHDYKSDLQEIAQKNGDVDIRYEVVRDEGPDHDKTIWM 206 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + I+G A G+ +K+ A Q AA E ++R Sbjct: 207 ELFINGKALGTGIGKNKKEAAQNAAKEAIERL 238 >gi|251788698|ref|YP_003003419.1| ribonuclease III [Dickeya zeae Ech1591] gi|247537319|gb|ACT05940.1| ribonuclease III [Dickeya zeae Ech1591] Length = 226 Score = 254 bits (650), Expect = 7e-66, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+K++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQKKLGYTFQQYDLLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSNIQTVERLILSWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRK 210 >gi|51598958|ref|YP_073146.1| ribonuclease III [Borrelia garinii PBi] gi|219684131|ref|ZP_03539075.1| ribonuclease III [Borrelia garinii PBr] gi|81609804|sp|Q660G7|RNC_BORGA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|51573529|gb|AAU07554.1| ribonuclease III [Borrelia garinii PBi] gi|219672120|gb|EED29173.1| ribonuclease III [Borrelia garinii PBr] Length = 245 Score = 254 bits (650), Expect = 7e-66, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 117/226 (51%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59 + S + + F N LL AL+HSS S+ ++ ERLEFLGD +L L+I+ L Sbjct: 15 KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKADNNERLEFLGDSVLNLIITDHL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EGELS + +VS ++ S +ARE+DL S+I + + I AD + Sbjct: 75 YKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAI 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + A+YLD G +A FV + R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 135 EAFVGAIYLDSGFSMATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V + + + G SK+ AE AA LK Sbjct: 195 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 240 >gi|260425711|ref|ZP_05779691.1| ribonuclease III [Citreicella sp. SE45] gi|260423651|gb|EEX16901.1| ribonuclease III [Citreicella sp. SE45] Length = 227 Score = 254 bits (650), Expect = 7e-66, Method: Composition-based stats. Identities = 90/220 (40%), Positives = 131/220 (59%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE+R+G+ FA+ L +ALTHSS+S +E +RLEFLGDR+LGL+++ L + Sbjct: 4 SAEIAALEQRLGHRFADPERLRRALTHSSMSAPGREDNQRLEFLGDRVLGLVMAEALLSE 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A EG+L+ RFN+LV E C++VARE+DL + +++ ++ D +E++ Sbjct: 64 DRGASEGQLAPRFNALVRKEACAEVAREIDLGAALKLGRSEMMSGGRRKMALLGDAMEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YLD G A V + W R + + RDAKT LQEWA A+ V P Y R G Sbjct: 124 IAAVYLDAGFGTAKALVLRLWGDRIARVEEDARDAKTSLQEWAQARGMVPPSYTEVAREG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 PDH P FT+ + A A+ SKR AEQ AA+ +L + Sbjct: 184 PDHAPVFTIEARLENGAAARATAGSKRKAEQQAASGLLDK 223 >gi|71903092|ref|YP_279895.1| ribonuclease III [Streptococcus pyogenes MGAS6180] gi|90101651|sp|Q48UR6|RNC_STRPM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71802187|gb|AAX71540.1| ribonuclease III [Streptococcus pyogenes MGAS6180] Length = 230 Score = 254 bits (650), Expect = 7e-66, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 9/226 (3%) Query: 7 STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 LE+ + F + +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 2 KQLEELLSTSFDIQFNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEY 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + EG++S + +V E+ + +R ++I++ K +I D+ Sbjct: 62 LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDL 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + AL LD GI+ F+ + + K + RD KT LQE+ K V +Y+V Sbjct: 122 FEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVRDYKTCLQEFLQTKGDVAIDYQV 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +F V + ++G ++G+ SK+ AEQ AA L + Sbjct: 182 ISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQL 227 >gi|332523874|ref|ZP_08400126.1| ribonuclease III [Streptococcus porcinus str. Jelinkova 176] gi|332315138|gb|EGJ28123.1| ribonuclease III [Streptococcus porcinus str. Jelinkova 176] Length = 230 Score = 254 bits (650), Expect = 7e-66, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 118/228 (51%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L++ F ++ LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MKKLK-ALLKETFNIVFNDQDLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+LS + +V E+ + +R ++I++ K +I Sbjct: 60 EYLFKKYPHKPEGDLSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD GIE F+++ + K + +D KT LQE AK V +Y Sbjct: 120 DLFEAFLGALLLDKGIEEVRLFLNQVMISQVEKGNFEKVKDYKTGLQEVLQAKGDVQIDY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V SGP H +F V + ++ ++G+ SK+ AEQ AA + L+ Sbjct: 180 QVVKESGPAHAKQFEVAILVNQEVISRGIGKSKKIAEQNAAKKALEHL 227 >gi|15674631|ref|NP_268805.1| ribonuclease III [Streptococcus pyogenes M1 GAS] gi|19745653|ref|NP_606789.1| ribonuclease III [Streptococcus pyogenes MGAS8232] gi|21909911|ref|NP_664179.1| ribonuclease III [Streptococcus pyogenes MGAS315] gi|28896390|ref|NP_802740.1| ribonuclease III [Streptococcus pyogenes SSI-1] gi|71910251|ref|YP_281801.1| ribonuclease III [Streptococcus pyogenes MGAS5005] gi|94988068|ref|YP_596169.1| ribonuclease III [Streptococcus pyogenes MGAS9429] gi|94991954|ref|YP_600053.1| ribonuclease III [Streptococcus pyogenes MGAS2096] gi|94993854|ref|YP_601952.1| ribonuclease III [Streptococcus pyogenes MGAS10750] gi|54039244|sp|P66671|RNC_STRP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54039245|sp|P66672|RNC_STRP8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54041616|sp|P66670|RNC_STRP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043363|sp|Q1JCZ9|RNC_STRPB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043364|sp|Q1JMX4|RNC_STRPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043366|sp|Q1J7V3|RNC_STRPF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|13621744|gb|AAK33526.1| putative ribonuclease III [Streptococcus pyogenes M1 GAS] gi|19747784|gb|AAL97288.1| putative ribonuclease III [Streptococcus pyogenes MGAS8232] gi|21904099|gb|AAM78982.1| putative ribonuclease III [Streptococcus pyogenes MGAS315] gi|28811641|dbj|BAC64573.1| putative ribonuclease III [Streptococcus pyogenes SSI-1] gi|71853033|gb|AAZ51056.1| ribonuclease III [Streptococcus pyogenes MGAS5005] gi|94541576|gb|ABF31625.1| ribonuclease III [Streptococcus pyogenes MGAS9429] gi|94545462|gb|ABF35509.1| Ribonuclease III [Streptococcus pyogenes MGAS2096] gi|94547362|gb|ABF37408.1| Ribonuclease III [Streptococcus pyogenes MGAS10750] Length = 230 Score = 254 bits (650), Expect = 7e-66, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 113/226 (50%), Gaps = 9/226 (3%) Query: 7 STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 LE+ + F + +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 2 KQLEELLSTSFDIQFNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEY 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + EG++S + +V E+ + +R ++I++ K +I D+ Sbjct: 62 LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDL 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + AL LD GI+ F+ + + K + +D KT LQE+ K V +Y+V Sbjct: 122 FEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQTKGDVAIDYQV 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +F V + ++G ++G+ SK+ AEQ AA L + Sbjct: 182 ISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQL 227 >gi|205373341|ref|ZP_03226145.1| ribonuclease III [Bacillus coahuilensis m4-4] Length = 249 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 112/223 (50%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG +F+N S+L++A THSS + ++ E ERLEFLGD +L L +S L+N Sbjct: 19 FKDFQEKIGISFSNVSILKQAFTHSSYVNEHRKKPFEDNERLEFLGDAVLELTVSHFLYN 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A ELD S + + ++ ADV E+ Sbjct: 79 KYATMSEGELTKLRAAIVCEPSLVKFANELDFGSVVLLGKGEELTGGRTRPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G++ F+++ + D K++LQE + EY++ Sbjct: 139 FIGALYLDQGLQSVEKFLEQIVFPKINDGAFSHVMDYKSQLQELIQREGSGQLEYRILLE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H F V ++ + G SK+ AEQ AA + L+ Sbjct: 199 KGPAHSKEFVSQVLLNSMEIGVGNGRSKKEAEQHAAQKALEHL 241 >gi|331084978|ref|ZP_08334065.1| ribonuclease III [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408678|gb|EGG88143.1| ribonuclease III [Lachnospiraceae bacterium 9_1_43BFAA] Length = 229 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 118/226 (52%), Gaps = 8/226 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60 R LEK+IGY F + LL+KA+ HSS ++ Q+ ERLEFLGD +L L S LF Sbjct: 3 RLKELEKKIGYTFQKKELLQKAMMHSSYTNEKHMKKQDCNERLEFLGDAVLELTTSEALF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 S EGEL+ S+V + VA+EL L S++ + SI +D VE Sbjct: 63 FDNPSMPEGELTKTRASIVCEPALAFVAKELMLGSYLLLGKGEEATGGRQRDSITSDAVE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI A+YLDGG A F+ K+ L++ K D+KT LQE AKF Y + Sbjct: 123 ALIGAIYLDGGFASAKEFIQKFILS-DLENKKLFYDSKTILQEMVQAKFTENVRYVLEKE 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKRE 223 GPDH+ FT I G +K+A+EQ AA + +L+++ Sbjct: 182 EGPDHNKSFTTSAYIGEECYGTGSGRTKKASEQEAAYQTILMLRKK 227 >gi|197285743|ref|YP_002151615.1| ribonuclease III [Proteus mirabilis HI4320] gi|238693201|sp|B4F047|RNC_PROMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|194683230|emb|CAR43912.1| RNase III, ds RNA [Proteus mirabilis HI4320] Length = 226 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 77/213 (36%), Positives = 115/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L + L+K++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNTLLVNQLQKKLGYTFKQNELLLQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A++LD I+ + K+++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGAIFLDSDIQNIENIILKWYENRLAEISPGDKQKDPKTRLQEYLQGRHLPLPSYVVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ +ISG+ P +GM S+R Sbjct: 178 QVRGEAHDQEFTIHCQISGIDQPVKGMGTSRRK 210 >gi|298528053|ref|ZP_07015457.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1] gi|298511705|gb|EFI35607.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1] Length = 232 Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 115/220 (52%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64 L+ +IGY + + LL +ALTHSS ++ + E ERLEFLGD +L L IS +LF F Sbjct: 2 LDELQDKIGYRYQDPELLVRALTHSSYANERHMEHNERLEFLGDAVLELCISNVLFFRFP 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EG L+ +LVS T +++AR L L +I + S+ AD +E+++ Sbjct: 62 RAPEGHLTRLRAALVSEPTLARLARSLTLGDYIFLGRGEELQGGRDRDSVLADTLEAILG 121 Query: 125 ALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G + A + ++ +++ +D K+ LQE F P Y + Sbjct: 122 AVYLDSGYDGAFECIAALFEDFIPDRVEALPVSKDFKSRLQEKTQGLFRARPVYTLIDSY 181 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP+H+ + V VE+ + M S + AEQ AA++ L+ Sbjct: 182 GPEHEKIYRVQVELPDGTGIEAMAGSVKKAEQKAASKALE 221 >gi|323499981|ref|ZP_08104937.1| ribonuclease III [Vibrio sinaloensis DSM 21326] gi|323314947|gb|EGA68002.1| ribonuclease III [Vibrio sinaloensis DSM 21326] Length = 225 Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats. Identities = 75/213 (35%), Positives = 114/213 (53%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ + LEK++GY F + L+ ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIAKLEKKLGYQFNDAELIGLALTHRSANGKH---NERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE +L +++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD IE + ++K R A+K G ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDIEEVRRIILSWYKTRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210 G H+ FTV E++G+ P G S+R Sbjct: 177 NIKGEAHNQEFTVSCEVAGIGQPVIGKGTSRRK 209 >gi|3176883|gb|AAD02939.1| RNase III [Bradyrhizobium japonicum] Length = 231 Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats. Identities = 97/225 (43%), Positives = 140/225 (62%), Gaps = 3/225 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLF 60 +R L + G+ FA+ +LL + +TH S +SY+RLEFLGD +LGL++S +L+ Sbjct: 1 MRTRRLRRASGHTFADPNLLMQGITHVSALKSGRKRGDSYQRLEFLGDHVLGLVVSDMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F +A EGELS R LV E+C+ VA+ L L I++ S S+ D+ E Sbjct: 61 HAFPNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSADARLRKSVLGDICE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++I A++LDGG A FV + W +R K + RD KT LQEWA K TP Y+ R Sbjct: 121 AVIGAIFLDGGHAAAAEFVKRNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVER 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +GP HDP+F V V++ GLAPA+G+ SKRAAE+VAA+ +++REG+ Sbjct: 181 TGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAASVMIEREGV 225 >gi|288553095|ref|YP_003425030.1| ribonuclease III [Bacillus pseudofirmus OF4] gi|288544255|gb|ADC48138.1| ribonuclease III [Bacillus pseudofirmus OF4] Length = 263 Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L +I F NR LL +A THSS + ++ + ERLEFLGD +L L +S L+ Sbjct: 34 QFDDLLLKIDLTFENRKLLIQAFTHSSYVNEHRIYSFQDNERLEFLGDAVLELAVSQFLY 93 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F+S EGE++ S+V + ++ A EL+ + + ++ ADV E Sbjct: 94 KKFNSMSEGEMTKLRASIVCEPSLARFAEELEFGELVLLGKGEEMTGGRNRPALLADVFE 153 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 S I ALYLD G+E F+ + + D K++LQE+ +Y + Sbjct: 154 SFIGALYLDQGLEAVYKFLSQTMYPKINDGAFSHMMDFKSQLQEFIQRDNLGQIQYVIVQ 213 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F V+++ G SK+ AEQ AA + L + Sbjct: 214 EIGPAHNREFVSEVQLNESKLGVGSGRSKKEAEQHAAQQALIKL 257 >gi|85860141|ref|YP_462343.1| ribonuclease III [Syntrophus aciditrophicus SB] gi|85723232|gb|ABC78175.1| ribonuclease III [Syntrophus aciditrophicus SB] Length = 240 Score = 254 bits (649), Expect = 9e-66, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 114/232 (49%), Gaps = 9/232 (3%) Query: 1 MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGL 53 M+ R LE + AF + +LL+ AL H S + ERLEFLGD +L L Sbjct: 1 MTEERQTALKKLESHLSCAFRDITLLDNALVHRSYVNENPSLSFADNERLEFLGDAVLEL 60 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 IS LL F EG+LS S+V+ + +++A++ + SFI + S Sbjct: 61 CISDLLMKAFPDYSEGQLSKLRASVVNEQPLAELAKKCRIGSFILLGKGEESSGGRSKPS 120 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGV 171 I A+ +E++ AA++LDGG + A FV + + + + +D KT LQE + +F Sbjct: 121 ILANTMEAITAAVFLDGGFDRAYEFVRRLFTPLIEEGNRSATYKDYKTTLQELSQNRFRE 180 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P Y++ GPDHD F + I G+ G SK+ AEQ AA + L Sbjct: 181 IPRYRLIGEYGPDHDKLFESGLSIPGIIETTGKGKSKKEAEQHAAHKALDEL 232 >gi|144899862|emb|CAM76726.1| ribonuclease III [Magnetospirillum gryphiswaldense MSR-1] Length = 229 Score = 254 bits (649), Expect = 9e-66, Method: Composition-based stats. Identities = 85/217 (39%), Positives = 116/217 (53%), Gaps = 4/217 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56 M A L +R+G+ FA LL +ALTH S++ YERLEFLGDR+LGL+++ Sbjct: 1 MDAGPIHDLCQRLGHEFAQSQLLTQALTHPSVAQGRAPRRNTPYERLEFLGDRVLGLVVA 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +LF+ F + EG L+ R +LV E+ + VA ++ L + +S ++ A Sbjct: 61 DMLFHRFPTEAEGALARRHAALVRRESLAVVAGQIGLPPCLTLSKGEEDAGGRGNPALLA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D E++I ALY D G EVA FV W + + +DAKT LQEWA P Y Sbjct: 121 DACEAVIGALYADAGFEVAARFVRSAWTALMDAAAQPPKDAKTALQEWAQGLGKPLPVYT 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 V + GP HDP F V V + G+ P G SKR AEQ Sbjct: 181 VVGQDGPPHDPTFVVSVTVEGVDPVHGTGASKRVAEQ 217 >gi|269121067|ref|YP_003309244.1| ribonuclease III [Sebaldella termitidis ATCC 33386] gi|268614945|gb|ACZ09313.1| ribonuclease III [Sebaldella termitidis ATCC 33386] Length = 231 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M + L ++IGY F + LL++AL H S ++ + E + ERLEFLGD +L L+ + Sbjct: 1 MDDSKLRELMEKIGYEFDDIKLLKEALIHRSYANEHGEIENINNERLEFLGDAVLDLIST 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ EG+L+ + ++S S V++E+ L ++ +S+ SI Sbjct: 61 EYIYTKEKDDNEGDLAKLKSRIISEPIFSAVSKEIALGEYLFLSNGEEITGGRDRKSILG 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174 D E+LI A+++D G + A KY K + +D KT LQE +KF + P Sbjct: 121 DAFEALIGAIFMDSGFDEAKRIALKYLKDKIDNIDDLEELKDYKTLLQELFQSKFHIIPN 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 Y++ GPDH+ +F + V++ G SK+ AE+ AA E Sbjct: 181 YEILSEKGPDHNKKFEIAVKLKEEIVGIGTGTSKKEAEKNAAREA 225 >gi|270308287|ref|YP_003330345.1| ribonuclease III [Dehalococcoides sp. VS] gi|270154179|gb|ACZ62017.1| ribonuclease III [Dehalococcoides sp. VS] Length = 248 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLL 59 L + LE+ +G F N SLLE+AL H+S + S ER+EFLGD +LG++ + L Sbjct: 13 LDLTELEESLGVKFENPSLLEQALIHTSWVNENPTHLNGSNERMEFLGDAVLGVIFADRL 72 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F +EG+L+ + LV E+ +VA ++L +++ + F + A Sbjct: 73 YHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGNYLYLGRGEDVSKGRFKPANLAGAF 132 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E+++AA+Y+D GI++ + + ++ + D K+ LQE A+ +TP Y++ Sbjct: 133 EAVLAAIYIDKGIDITREVIFRLFRTEMERVQTLSSNIDYKSRLQELIQAQMQMTPRYRI 192 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 T SGP+H+ F V A+G SK+ AE AA L++ Sbjct: 193 TNFSGPEHNRLFVAEVYTEDKVLAEGSGRSKKEAETSAAKAALQQ 237 >gi|319898692|ref|YP_004158785.1| ribonuclease III [Bartonella clarridgeiae 73] gi|319402656|emb|CBI76202.1| ribonuclease III [Bartonella clarridgeiae 73] Length = 234 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 114/226 (50%), Positives = 148/226 (65%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LE+ ++F + L+KALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 1 MKHQIIDQLERLTEHSFKDADKLKKALTHSSVQSSEQGNYERLEFLGDRVLGLLIAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +A E+ L + IRV +++ + ++ ADV+E Sbjct: 61 QIFPQASEGELSVRLNGLVNAQTCADIALEMGLPNMIRVGCEMKNLEGRRLANMYADVIE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YL+GG+E F+ KYW+ RA K RRDAKTELQEWAH K P Y+V R Sbjct: 121 ALIAVIYLEGGLESVRPFIQKYWQNRAKKMNAGRRDAKTELQEWAHTKDRAHPHYQVLQR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDHDP F V V I G A G SKR AE+ AA +L+REGIW Sbjct: 181 CGPDHDPIFVVEVSICGFASEIGRGSSKRQAERDAAERILRREGIW 226 >gi|170754285|ref|YP_001781997.1| ribonuclease III [Clostridium botulinum B1 str. Okra] gi|169119497|gb|ACA43333.1| ribonuclease III [Clostridium botulinum B1 str. Okra] Length = 234 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 120/223 (53%), Gaps = 4/223 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 L+ ++ F N LL+ ALTHSS ++ + + YERLEFLGD +L L+IS L+ + Sbjct: 8 LKELQYKLKVYFKNEKLLDVALTHSSYANGKRNIKYYERLEFLGDSVLQLIISEHLYQKY 67 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + KEGEL+ + +V + ++A+ DL ++++S SI AD VES+I Sbjct: 68 EDKKEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESII 127 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G++ A FV K +K+ K+ + D KT LQE +T Y++ + Sbjct: 128 AAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTINYELLKQE 187 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H RF V I G+ SK+ AEQ AA E LK G Sbjct: 188 GPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 230 >gi|187778952|ref|ZP_02995425.1| hypothetical protein CLOSPO_02547 [Clostridium sporogenes ATCC 15579] gi|187772577|gb|EDU36379.1| hypothetical protein CLOSPO_02547 [Clostridium sporogenes ATCC 15579] Length = 237 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 120/223 (53%), Gaps = 4/223 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 L+ ++ F + LL+ ALTHSS ++ + + YERLEFLGD +L L+IS L+ + Sbjct: 11 LKELQYKLKVCFKDEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKY 70 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + KEGEL+ + +V + ++A+ DL ++++S SI AD VES+I Sbjct: 71 EDKKEGELTRKRAIIVCENSLYEMAKRWDLGFYLQMSKGEELTGGRERVSILADCVESII 130 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G++ A FV K +K+ K+ + D KT LQE +T Y++ + Sbjct: 131 AAIYLDKGLDEAREFVMKNFKEIIEKAMRDEIILDYKTTLQEIVQQNNDLTINYELLKQE 190 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H +F V I G+ SK+ AEQ AA E LK G Sbjct: 191 GPPHRRKFFTNVTIDNEVRGTGIGYSKKEAEQNAAKEALKNLG 233 >gi|254459764|ref|ZP_05073180.1| ribonuclease III [Rhodobacterales bacterium HTCC2083] gi|206676353|gb|EDZ40840.1| ribonuclease III [Rhodobacteraceae bacterium HTCC2083] Length = 228 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 88/221 (39%), Positives = 121/221 (54%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + L+KRI Y F LL +A+THSS+S + +RLEFLGDR+LGL+++ L Sbjct: 4 SADLQALQKRIDYRFEQGELLTEAVTHSSMSSPSRGDNQRLEFLGDRVLGLVMAEALLGA 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A EG+L+ R+N+LV ETC+ VAR++ L +R+ K ++ D +E+L Sbjct: 64 DVKASEGQLAPRYNALVRKETCADVARDIGLGDVLRLGRSEMKSGGRRKLALLGDGMEAL 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+Y+DGG A + + W R RD KT LQEWA ++ P Y T RSG Sbjct: 124 IAAVYVDGGFNAAQALILRLWGSRITSVEADARDPKTSLQEWAQSRGLTPPAYVETARSG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH P FT+ + A SKR AEQ AA +L R Sbjct: 184 PDHAPHFTIEARLDTGETASAEAGSKRLAEQAAAKALLTRM 224 >gi|153930813|ref|YP_001384630.1| ribonuclease III [Clostridium botulinum A str. ATCC 19397] gi|153937224|ref|YP_001388147.1| ribonuclease III [Clostridium botulinum A str. Hall] gi|153940610|ref|YP_001391753.1| ribonuclease III [Clostridium botulinum F str. Langeland] gi|168180664|ref|ZP_02615328.1| ribonuclease III [Clostridium botulinum NCTC 2916] gi|226949808|ref|YP_002804899.1| ribonuclease III [Clostridium botulinum A2 str. Kyoto] gi|152926857|gb|ABS32357.1| ribonuclease III [Clostridium botulinum A str. ATCC 19397] gi|152933138|gb|ABS38637.1| ribonuclease III [Clostridium botulinum A str. Hall] gi|152936506|gb|ABS42004.1| ribonuclease III [Clostridium botulinum F str. Langeland] gi|182668630|gb|EDT80609.1| ribonuclease III [Clostridium botulinum NCTC 2916] gi|226841844|gb|ACO84510.1| ribonuclease III [Clostridium botulinum A2 str. Kyoto] gi|295319777|gb|ADG00155.1| ribonuclease III [Clostridium botulinum F str. 230613] gi|322806720|emb|CBZ04289.1| ribonuclease III [Clostridium botulinum H04402 065] Length = 234 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 120/223 (53%), Gaps = 4/223 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 L+ ++ F N LL+ ALTHSS ++ + + YERLEFLGD +L L+IS L+ + Sbjct: 8 LKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKY 67 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + KEGEL+ + +V + ++A+ DL ++++S SI AD VES+I Sbjct: 68 EDKKEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESII 127 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G++ A FV K +K+ K+ + D KT LQE +T Y++ + Sbjct: 128 AAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTINYELLKQE 187 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H RF V I G+ SK+ AEQ AA E LK G Sbjct: 188 GPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 230 >gi|52842090|ref|YP_095889.1| ribonuclease III [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81377263|sp|Q5ZUD5|RNC_LEGPH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|52629201|gb|AAU27942.1| ribonuclease III [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 224 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + L +R+ Y F N + L++ALTH S ++YER EFLGD IL +I+ LFN Sbjct: 2 KINLERLCRRLNYHFNNIAYLKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFNR 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+LS + LV E +++ARE+DL ++ + + TSI AD +E++ Sbjct: 59 FPLHSEGQLSRLRSFLVKGEMLAEIAREIDLGDYLFLGQGELRSGGFRRTSILADALEAI 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 +AA+YLDGG+ A + + R +DAKT+LQE+ A PEY +T Sbjct: 119 LAAIYLDGGMIAAKQIILMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKI 178 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G +H F V I G+ A G ++R AEQ+AA +L++ Sbjct: 179 EGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLEQL 222 >gi|150016054|ref|YP_001308308.1| ribonuclease III [Clostridium beijerinckii NCIMB 8052] gi|189043303|sp|A6LSM2|RNC_CLOB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|149902519|gb|ABR33352.1| Ribonuclease III [Clostridium beijerinckii NCIMB 8052] Length = 232 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M+ +E+ +G F N +LL+ ALTHSS + ++ E ERLEFLGD +L L I+ Sbjct: 1 MNRYTLKEIEENLGVFFNNHTLLKTALTHSSFGNQFKDAEYNERLEFLGDSVLQLCITEY 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LFN++ EGEL+ + +V + ++A++++L S+IR+S SIQAD Sbjct: 61 LFNNYKHKTEGELTKIRSLIVCENSLYEIAKKINLGSYIRMSKGEEITGGRERISIQADA 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYK 176 VE++IAA+YLD GI F+ ++++ K+ + D KT+LQE V +Y+ Sbjct: 121 VEAIIAAVYLDKGIGFVRDFILLHFEEIINKAINNEIVLDFKTKLQELLQKDGEVVIQYE 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +T GP H +F V I +G SK+ AEQ AA + L Sbjct: 181 LTKFEGPPHRRKFFTNVVIDKKLMGEGSGYSKKEAEQNAAKQAL 224 >gi|302338403|ref|YP_003803609.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293] gi|301635588|gb|ADK81015.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293] Length = 244 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 68/220 (30%), Positives = 115/220 (52%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 EK +G F L A +H S ++ ++ E+LEFLGD +LGL++S LF Sbjct: 20 FEKHVGIRFRKLEFLNLAFSHRSFANEQGTNVDNNEKLEFLGDSVLGLVVSEYLFALLPD 79 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ + +VS ++ +++AR++ + ++I + +I AD +E++I + Sbjct: 80 KAEGDLARVKSFVVSEDSLAEIARKIKVDNYILIGKGEEYSGGRNKKAILADCMEAIIGS 139 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD G + A +FV KY + + ++D KT LQE+ +F P Y + ++GP Sbjct: 140 FYLDSGFKAARSFVLKYLIPEINKVLENRHKKDYKTLLQEYVQKQFKSYPRYSLVKKTGP 199 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DHD F + V+I G G +K+ AEQ AA ++ Sbjct: 200 DHDRTFWIEVKIDGKVYGPGKGKNKKEAEQHAAGLAYRKL 239 >gi|168184661|ref|ZP_02619325.1| ribonuclease III [Clostridium botulinum Bf] gi|237795890|ref|YP_002863442.1| ribonuclease III [Clostridium botulinum Ba4 str. 657] gi|182672267|gb|EDT84228.1| ribonuclease III [Clostridium botulinum Bf] gi|229262399|gb|ACQ53432.1| ribonuclease III [Clostridium botulinum Ba4 str. 657] Length = 234 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 120/223 (53%), Gaps = 4/223 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 L+ ++ F N LL+ ALTHSS ++ + + YERLEFLGD +L L+IS L+ + Sbjct: 8 LKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKY 67 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + KEGEL+ + +V + ++A+ DL ++++S SI AD VES+I Sbjct: 68 EDKKEGELTRKRAIIVCENSLYEIAKRWDLGLYLQMSKGEELTGGRERVSILADCVESII 127 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G++ A FV K +K+ K+ + D KT LQE +T Y++ + Sbjct: 128 AAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTINYELLKQE 187 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H RF V I G+ SK+ AEQ AA E LK G Sbjct: 188 GPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 230 >gi|118474451|ref|YP_892860.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40] gi|261885507|ref|ZP_06009546.1| ribonuclease III [Campylobacter fetus subsp. venerealis str. Azul-94] gi|189043299|sp|A0RRM7|RNC_CAMFF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|118413677|gb|ABK82097.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40] Length = 223 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 4/223 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + LE+ +GY F N++LL++ALTH S+ S + ERLEFLGD +L L++ LF F Sbjct: 3 KLNRLEEHLGYKFKNKTLLKEALTHKSMKSSV--NNERLEFLGDAVLDLIVGEYLFFKFK 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS +LV+ ++ + ++ ++ L F+ +S+ + S+ +D +E+L+ Sbjct: 61 DTDEGNLSKLRAALVNEKSFASISSQIRLGDFLYLSAAEDNNNGRNKPSLVSDALEALMG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL+ G+E + + + +D KT LQE A+FGVTP Y++ SG Sbjct: 121 AIYLESGLEAVKKIFINLLESQYNNIDLQSLGKDYKTTLQEITQARFGVTPRYELVSSSG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PDH F + V ++ A+ + SK+ AEQ AA +VL+ I Sbjct: 181 PDHKKSFEMAVFLNDKELARAIGNSKKEAEQSAAWKVLQGMNI 223 >gi|312881718|ref|ZP_07741495.1| ribonuclease III [Vibrio caribbenthicus ATCC BAA-2122] gi|309370608|gb|EFP98083.1| ribonuclease III [Vibrio caribbenthicus ATCC BAA-2122] Length = 225 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 115/213 (53%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ TLEK++GY F + L+ ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIVTLEKKLGYQFDDAELISLALTHRSANSKH---NERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV +T +++ RE L ++++ K SI AD VE Sbjct: 57 QRFPQINEGDMSRMRATLVRGKTLAELGREFQLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+Y+D IEV + +++ R A++ G ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYMDSNIEVVRGIILAWYQGRLEAIEPGASQKDPKTRLQEFLQGRRKPLPAYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H+ FTV E++G+ P G S+R Sbjct: 177 NIKGEAHNQEFTVSCEVAGINQPVVGKGTSRRK 209 >gi|163738238|ref|ZP_02145654.1| 4'-phosphopantetheinyl transferase [Phaeobacter gallaeciensis BS107] gi|161388854|gb|EDQ13207.1| 4'-phosphopantetheinyl transferase [Phaeobacter gallaeciensis BS107] Length = 228 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 86/216 (39%), Positives = 130/216 (60%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 E RIGY+F+ +LL +ALTH+S+S ++ +RLEFLGDR+LGL+++T L + +A Sbjct: 9 AFETRIGYSFSQPALLVRALTHASVSSPNRQDNQRLEFLGDRVLGLVMATALLDTDKAAT 68 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+L+ RFN+LV ETC+ VAR++DL + +++ ++ D +E++IAA+Y Sbjct: 69 EGQLAPRFNALVRKETCADVARDIDLGAVLKLGRSETMSGGRRKLALLGDAMEAVIAAVY 128 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 DGG + A + + W R + RD KT LQE+A A+ P Y + R+GPDH P Sbjct: 129 KDGGFDAAQELILRLWGNRIGRVEADARDPKTTLQEFAQARGEQPPAYVLVERTGPDHQP 188 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 FT+ V++ + SKR AEQ AA +L R Sbjct: 189 EFTISVQLQDGTEGRATAGSKRQAEQAAAKFLLARL 224 >gi|111115536|ref|YP_710154.1| ribonuclease III [Borrelia afzelii PKo] gi|123341290|sp|Q0SMF0|RNC_BORAP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|110890810|gb|ABH01978.1| ribonuclease III [Borrelia afzelii PKo] Length = 245 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 117/226 (51%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59 + S + + F N LL AL+HSS S+ ++ ERLEFLGD +L L+I+ L Sbjct: 15 KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKSDNNERLEFLGDSVLNLIITDHL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EGELS + +VS ++ S +ARE+DL S+I + + I AD + Sbjct: 75 YKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAI 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + A+YLD G +A FV + R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 135 EAFVGAIYLDSGFLIATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPNYKL 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V + + + G SK+ AE AA LK Sbjct: 195 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 240 >gi|148380412|ref|YP_001254953.1| ribonuclease III [Clostridium botulinum A str. ATCC 3502] gi|148289896|emb|CAL84004.1| putative ribonuclease III [Clostridium botulinum A str. ATCC 3502] Length = 237 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 120/223 (53%), Gaps = 4/223 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 L+ ++ F N LL+ ALTHSS ++ + + YERLEFLGD +L L+IS L+ + Sbjct: 11 LKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKY 70 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + KEGEL+ + +V + ++A+ DL ++++S SI AD VES+I Sbjct: 71 EDKKEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESII 130 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G++ A FV K +K+ K+ + D KT LQE +T Y++ + Sbjct: 131 AAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTINYELLKQE 190 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H RF V I G+ SK+ AEQ AA E LK G Sbjct: 191 GPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 233 >gi|253682200|ref|ZP_04862997.1| ribonuclease III [Clostridium botulinum D str. 1873] gi|253561912|gb|EES91364.1| ribonuclease III [Clostridium botulinum D str. 1873] Length = 236 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 112/220 (50%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63 + +E ++ F + +LL+ ALTHSS + + S ERLEFLGD IL L IS L+N + Sbjct: 9 LNEVENKLNVKFNDINLLDTALTHSSFVNENKNIYSNERLEFLGDSILQLCISEFLYNKY 68 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG L+ + +V + +VA+E ++ +I +S TSI +D VE++I Sbjct: 69 EQEPEGFLTKKRALIVCGNSLHEVAKEWNIGKYINMSKGEEMTGGRTRTSILSDCVEAII 128 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++YLD G A F+ + + K+ + D KT+LQE EYK+ Sbjct: 129 ASIYLDQGYATAKKFIIDNFNEIIQKANSDQIILDYKTKLQETIQKFGDYNIEYKLVSFD 188 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H +F V I G SK+ AEQ AA E LK Sbjct: 189 GPPHRRKFITEVLIDSEVKGVGEGYSKKEAEQNAAKEALK 228 >gi|219685563|ref|ZP_03540380.1| ribonuclease III [Borrelia garinii Far04] gi|219672962|gb|EED29984.1| ribonuclease III [Borrelia garinii Far04] Length = 246 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 117/226 (51%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59 + S + + F N LL AL+HSS S+ ++ ERLEFLGD +L L+I+ L Sbjct: 16 KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKADNNERLEFLGDSVLNLIITDHL 75 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EGELS + +VS ++ S VARE++L S+I + + I AD + Sbjct: 76 YKTYPNKSEGELSKARSYIVSEDSLSSVAREIELGSYILLGRGEESNDGRNKKGILADAI 135 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + A+YLD G +A FV + R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 136 EAFVGAIYLDSGFSMATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 195 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V + + + G SK+ AE AA LK Sbjct: 196 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 241 >gi|163750600|ref|ZP_02157837.1| ribonuclease III [Shewanella benthica KT99] gi|161329595|gb|EDQ00586.1| ribonuclease III [Shewanella benthica KT99] Length = 230 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 117/224 (52%), Gaps = 6/224 (2%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M ++ L + +GY F ++LL++ALTH S + + ERLEFLGD IL ++IS L Sbjct: 6 MEPIKNIPRLCRTLGYQFNQQALLDQALTHRSANSKH---NERLEFLGDSILSIIISDAL 62 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F EG+LS +LV + +++ E L ++++ K SI AD V Sbjct: 63 YHQFPKVTEGDLSRMRATLVCGKMLAEIGFEFKLGDYLKLGPGELKSGGFRRESIIADGV 122 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLD E V +++ R A+ ++D KT LQE P YKVT Sbjct: 123 EAIIGAIYLDADFETCRARVLSWYESRLAIIEPINQKDPKTLLQELLQGFKKPLPVYKVT 182 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLK 221 G H FTV + P G+ S+R AEQ+AAA+VL+ Sbjct: 183 DIKGEAHAQTFTVECSVEELKKPLVGVASSRRKAEQIAAAKVLE 226 >gi|73667460|ref|YP_303476.1| ribonuclease III [Ehrlichia canis str. Jake] gi|90101626|sp|Q3YQX7|RNC_EHRCJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|72394601|gb|AAZ68878.1| RNAse III [Ehrlichia canis str. Jake] Length = 226 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 85/219 (38%), Positives = 122/219 (55%), Gaps = 2/219 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 T+ K I Y F N LL +ALTH SI S + +YERLEFLGD +L ++IS +LFN F Sbjct: 2 IETISKTIKYHFKNPQLLHEALTHPSIISKDSLKFNYERLEFLGDAVLNIVISEMLFNIF 61 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ + +LV +VA+ ++L FI +S R + + + +E+LI Sbjct: 62 PKDTEGNLAKKKTALVCGNQLVKVAQSINLGQFIIMSDGERTCGGANNHNNLENALEALI 121 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG+ A F+ +WK A+ +DAKT LQE+ K P Y + +SGP Sbjct: 122 GAIYLDGGLTAAQNFIHSFWKHTAIHMDIPPQDAKTILQEFIQGKRLPAPTYHIIDKSGP 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 DH+P FTV + I Q +K+ AEQ AA+ +L + Sbjct: 182 DHNPIFTVELRIPLYKTIQATGNNKKLAEQKAASLMLNQ 220 >gi|271501621|ref|YP_003334647.1| ribonuclease III [Dickeya dadantii Ech586] gi|270345176|gb|ACZ77941.1| ribonuclease III [Dickeya dadantii Ech586] Length = 226 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+K++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQKKLGYTFQQYDLLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSNIQTIERLILSWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRK 210 >gi|58617572|ref|YP_196771.1| ribonuclease III [Ehrlichia ruminantium str. Gardel] gi|75432734|sp|Q5FGH0|RNC_EHRRG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|58417184|emb|CAI28297.1| Ribonuclease III [Ehrlichia ruminantium str. Gardel] Length = 227 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 83/218 (38%), Positives = 124/218 (56%), Gaps = 2/218 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + K I Y F N LL +ALTH S+ + +YERLEFLGD +L L++S +LFN F Sbjct: 4 NAISKIIKYDFKNTQLLNEALTHPSVLSKDNNNFNYERLEFLGDAVLNLVVSEMLFNIFP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +LV ++A+ ++L FI +S R + ++ + +E+LI Sbjct: 64 YDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIG 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG++ A F+ +WK A +DAKT LQEWA +K P Y + +SGPD Sbjct: 124 AIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPD 183 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H+P FTV V I+ +K+ AEQ AA+ +L + Sbjct: 184 HNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAK 221 >gi|332703537|ref|ZP_08423625.1| Ribonuclease 3 [Desulfovibrio africanus str. Walvis Bay] gi|332553686|gb|EGJ50730.1| Ribonuclease 3 [Desulfovibrio africanus str. Walvis Bay] Length = 233 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 115/229 (50%), Gaps = 5/229 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57 M R + ++ + Y F + L +ALTHSS ++ ++ ES ERLEFLGD +L L IS Sbjct: 3 MDMDRLAAIQAELDYHFGQPAYLARALTHSSYANEHELALESNERLEFLGDAVLELAISE 62 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF F A EG+L+ + LV +T +Q AR+L L I + S+ AD Sbjct: 63 CLFQRFPMAHEGQLTRIRSRLVKEKTLAQRARDLGLDRLILLGRGEESQGGRDRDSVLAD 122 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEY 175 +E+L+ A++LDGG A FV + ++ ++ +D KT LQE +F + P Y Sbjct: 123 ALEALLGAVFLDGGYLAAREFVSRTFQDLLPETADLPKVKDYKTRLQEITQQRFKIRPIY 182 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGPDH + V V + A S + AEQ AA ++ G Sbjct: 183 AQLGTSGPDHARIYEVEVRLPEGASFAATGASLKRAEQNAARLAIEHLG 231 >gi|170761820|ref|YP_001787766.1| ribonuclease III [Clostridium botulinum A3 str. Loch Maree] gi|169408809|gb|ACA57220.1| ribonuclease III [Clostridium botulinum A3 str. Loch Maree] Length = 234 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 120/223 (53%), Gaps = 4/223 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 L+ ++ F N LL+ ALTHSS ++ + + YERLEFLGD +L L+IS L+ + Sbjct: 8 LKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKY 67 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + KEGEL+ + +V + ++A+ DL ++++S SI AD VES+I Sbjct: 68 EDKKEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESII 127 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G++ A FV K +K+ K+ + D KT LQE +T Y++ + Sbjct: 128 AAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTINYELLKQE 187 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H RF V I G+ SK+ AEQ AA E LK G Sbjct: 188 GPPHRRRFFTNVTIDNEIRGTGIGYSKKEAEQNAAREALKNLG 230 >gi|269140067|ref|YP_003296768.1| ribonuclease III [Edwardsiella tarda EIB202] gi|267985728|gb|ACY85557.1| ribonuclease III [Edwardsiella tarda EIB202] gi|304559895|gb|ADM42559.1| Ribonuclease III [Edwardsiella tarda FL6-60] Length = 226 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFRQQDLLMQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIERLILDWYHSRLEEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL AP G+ S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSAPVVGVGSSRRK 210 >gi|57239534|ref|YP_180670.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden] gi|58579518|ref|YP_197730.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden] gi|81352757|sp|Q5HA74|RNC_EHRRW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|57161613|emb|CAH58541.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden] gi|58418144|emb|CAI27348.1| Ribonuclease III [Ehrlichia ruminantium str. Welgevonden] Length = 227 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 84/218 (38%), Positives = 124/218 (56%), Gaps = 2/218 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + K I Y F N LL +ALTH S+ + +YERLEFLGD +L L+IS +LFN F Sbjct: 4 NAISKIIKYDFKNTQLLNEALTHPSVLSKDNNNFNYERLEFLGDAVLNLVISEMLFNIFP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +LV ++A+ ++L FI +S R + ++ + +E+LI Sbjct: 64 YDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIG 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG++ A F+ +WK A +DAKT LQEWA +K P Y + +SGPD Sbjct: 124 AIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPD 183 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H+P FTV V I+ +K+ AEQ AA+ +L + Sbjct: 184 HNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAK 221 >gi|225180933|ref|ZP_03734381.1| Ribonuclease III [Dethiobacter alkaliphilus AHT 1] gi|225168414|gb|EEG77217.1| Ribonuclease III [Dethiobacter alkaliphilus AHT 1] Length = 233 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 109/229 (47%), Gaps = 6/229 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L K++ NR + +ALTHSS +H + ERLEFLGD +L L+IS Sbjct: 1 MGKKDLNYLFKQLNIEPKNREIYIQALTHSSYAHEHNLGSHAHNERLEFLGDAVLELVIS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F EG+L+ +V ++ ++A L+L ++R+ S+ A Sbjct: 61 EALFKRFPLLPEGKLTRFRAGMVCEDSLFKIANSLELGKYLRLGKGEAASGGRQRPSLLA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPE 174 D E+++ A+YLD G V V + + G R D KT +QE+ A TPE Sbjct: 121 DAFEAMLGAMYLDQGFYVVQETVTGIFAPLFEDMAKGSMRHDYKTLMQEYTQASLATTPE 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y++ GPDH F + ++ +G SK+ AEQ AA ++ Sbjct: 181 YRIVAEQGPDHSKVFVAQLLLNREVYGEGSGRSKKEAEQEAARVAYQQL 229 >gi|32490945|ref|NP_871199.1| hypothetical protein WGLp196 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30173145|sp|Q8D305|RNC_WIGBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|25166151|dbj|BAC24342.1| rnc [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 226 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 116/223 (52%), Gaps = 6/223 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L ++ L+K++GY F N +L++ALTH S S ++ ERLEFLGD IL +IS L+ Sbjct: 1 MKNLFFNKLQKKMGYLFHNNIILKQALTHRSFS---SKNNERLEFLGDSILNYIISDALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N+F + EG+LS + LV T +++ARE L ++ + K SI ++ +E Sbjct: 58 NNFTNIPEGKLSQMRSYLVRGNTLAEIAREFCLGDYLILGIGEVKTGGKNRDSILSNAME 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I ++LD I V ++K R + ++D KT LQE+ P+Y + Sbjct: 118 AIIGGIFLDSNINKTHEIVISWYKNRLYSMSLKNLKKDPKTRLQEYLQGNKFSLPQYYIK 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVL 220 +G H+ FT+ I G ++R AEQ AA + L Sbjct: 178 NITGESHNQEFTICCFIDDLKKSVIGYGKTRRKAEQSAAKQAL 220 >gi|238920905|ref|YP_002934420.1| ribonuclease III [Edwardsiella ictaluri 93-146] gi|259491900|sp|C5B8Y2|RNC_EDWI9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238870474|gb|ACR70185.1| ribonuclease III, putative [Edwardsiella ictaluri 93-146] Length = 226 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFRQHDLLMQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIERLILDWYRSRLEEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL AP G+ S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSAPVVGVGSSRRK 210 >gi|306819680|ref|ZP_07453341.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552246|gb|EFM40176.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 233 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 121/221 (54%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 +E IGY F N++ L+ ALTHSS + ++ + ERLEFLGD +LGL++S +F + Sbjct: 9 LEQVENTIGYKFKNKNYLQIALTHSSYVNEHKLTKDNERLEFLGDSVLGLIVSNYIFAYK 68 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S KEGEL+ +++V ++ +A +L + +I++ + + SI AD VE++I Sbjct: 69 SSLKEGELTKIRSTIVCEKSLMHIAEKLKIGQYIKLGKGEKISGGAKRASILADAVEAMI 128 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD + +V + + ++ D K++LQE G T +Y++ Sbjct: 129 AAIYLDSDFDNVSKYVLDWLGDTIKNALDNKKNDDYKSKLQEEVQKVRGRTLKYELIAMK 188 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH+ FT+ V G SK+ AEQ+AA + L++ Sbjct: 189 GPDHERTFTIGVYCDNKLIGTGKGHSKKEAEQLAAKDALEK 229 >gi|329116187|ref|ZP_08244904.1| ribonuclease III [Streptococcus parauberis NCFD 2020] gi|326906592|gb|EGE53506.1| ribonuclease III [Streptococcus parauberis NCFD 2020] Length = 230 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 112/220 (50%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L+ FA+R+LLE A TH+S ++ ++ ERLEFLGD +L L+IS LF + Sbjct: 8 LKDSFDITFADRNLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFEKYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG++S + + +V E+ + +R ++I++ K +I D+ E+ + Sbjct: 68 NKAEGDMSKQRSMIVREESLAGFSRFCTFDNYIKLGKGEEKSGGRNRDTILGDLFEAFLG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AL LD G+E F+ + + K + D KT LQE ++ + +Y+V GP Sbjct: 128 ALLLDKGVEKVRKFLYQVMIPQVEKGTFEQVMDYKTNLQELLQSQGDIIIDYQVISEEGP 187 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 HD F V V + +QG SK+ AEQ AA L++ Sbjct: 188 AHDKVFEVAVLSNEKTLSQGKGKSKKLAEQAAAKNALEQL 227 >gi|56459918|ref|YP_155199.1| RNase III, dsRNA-specific ribonuclease [Idiomarina loihiensis L2TR] gi|81363596|sp|Q5R106|RNC_IDILO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56178928|gb|AAV81650.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina loihiensis L2TR] Length = 229 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 69/213 (32%), Positives = 114/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + + LEK +GY+F + LL +A+TH S S ++ ERLEFLGD ILGL+I+ L+ Sbjct: 3 LPKPPLTELEKIVGYSFEQQGLLHQAMTHRSASSTH---NERLEFLGDSILGLVIAEALY 59 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+LS ++V + +++ +++ L F+ + K SI AD VE Sbjct: 60 QKFPKVAEGDLSRMRAAIVCGRSLAKLGKKMGLGDFLSLGQGELKSGGYRRESILADAVE 119 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD ++ + +++ + ++ G ++D KT LQE A+ PEY V Sbjct: 120 AIIGAIYLDSDMDTIRQVILNWFEPQLTLIEPGTSQKDPKTRLQELLQARQKPLPEYDVV 179 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210 G H+ +FTV + G+ P +G S+R Sbjct: 180 ATQGQAHNQQFTVNCSVEGIESPFKGTGTSRRK 212 >gi|227328581|ref|ZP_03832605.1| ribonuclease III [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 226 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 70/213 (32%), Positives = 111/213 (52%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQRKLGYTFQQYDLLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRA 210 G HD FT+ ++SG + + G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRK 210 >gi|56417113|ref|YP_154187.1| ribonuclease III [Anaplasma marginale str. St. Maries] gi|81358903|sp|Q5P9U8|RNC_ANAMM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56388345|gb|AAV86932.1| ribonuclease III [Anaplasma marginale str. St. Maries] Length = 232 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 78/216 (36%), Positives = 113/216 (52%), Gaps = 1/216 (0%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 + + GY F + LL +ALTH +S+ +YERLEFLGD +L + +S +L+ F Sbjct: 12 KIYEATGYQFRDLDLLLEALTHPRLSYKSAANYERLEFLGDAVLSMTVSEMLYRLFPDDD 71 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ + +LV ++AR + L I +S R S + +E+LI A+Y Sbjct: 72 EGCLTRKRTALVRGSEVVEIARSIGLGELILMSGGERTCGGSDNPGTLENALEALIGAMY 131 Query: 128 LDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +DGG E +F+ K+W RA +D KT LQEW + P YK+ +SGP+H Sbjct: 132 MDGGPEAYRSFIHKHWLARAQHMSYTPPQDPKTALQEWVQGRGWAMPLYKLVSKSGPEHK 191 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F V V I G SK+ AEQ AA +LK+ Sbjct: 192 PVFAVEVSIQEHGNVLGTGSSKKLAEQEAAKLMLKK 227 >gi|282892110|ref|ZP_06300585.1| hypothetical protein pah_c207o041 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498005|gb|EFB40349.1| hypothetical protein pah_c207o041 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 236 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 119/227 (52%), Gaps = 4/227 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59 A S +E R+GY F +R LL A H S + +E ERLEFLGD +LGLLI+ L Sbjct: 8 AQNISNIELRLGYKFQDRDLLALAFVHRSFINENREIHEHNERLEFLGDSVLGLLIADYL 67 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S EGELS + LV A +C +LDL F+ + R + SI AD++ Sbjct: 68 YRYLPSTPEGELSYLKSRLVEASSCVTYIHKLDLEQFLLLGRGERMNDGRGRESILADLL 127 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLDGG+E A F+ K + K R+ K LQ++ K+ TP Y V Sbjct: 128 EAIIGAVYLDGGLESAKAFLFKNFSTEIEAILKTPVRNWKALLQDYCQKKYQTTPSYHVI 187 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDH F + V ++ +G SK+ A+Q AA + L + I Sbjct: 188 DEKGPDHSKTFKISVFLNDEEVGKGEGGSKKEAQQKAAEDALSKMDI 234 >gi|253581846|ref|ZP_04859070.1| ribonuclease III [Fusobacterium varium ATCC 27725] gi|251836195|gb|EES64732.1| ribonuclease III [Fusobacterium varium ATCC 27725] Length = 235 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 123/229 (53%), Gaps = 7/229 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60 Y LE +GY+F N+ LL+ +L H S + + + S ERLE LGD +L L+++ L+ Sbjct: 4 NYLELEGNLGYSFNNKELLKNSLIHRSFGNEHWRYKKISNERLELLGDAVLDLVVTEYLY 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +S+ EG+L+ + +VS + +++++D+ ++ +S +SI D E Sbjct: 64 KSHESSTEGDLAKIKSMVVSEPVLASISKKMDVGKYLLLSKGEEMTGGRERSSILGDAFE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+YLD E A + + K + + D KT LQE++ ++ + P Y+V Sbjct: 124 AILGAIYLDSDFETAKKYALSHIKDSIDHVDKNEDILDFKTILQEYSQREYKIIPSYEVI 183 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 +GPDH F + V I G +G +K++AEQ AA E+ K+ G+ T Sbjct: 184 RETGPDHQKVFEIEVRI-GERTGRGTGKNKKSAEQSAAKELCKKLGVKT 231 >gi|58584360|ref|YP_197933.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75498100|sp|Q5GTI3|RNC_WOLTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|58418676|gb|AAW70691.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 243 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 124/226 (54%), Gaps = 5/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L T+ K I Y F N ++LE+ALTH S++ E+YERLEFLGD IL +++S Sbjct: 11 MEDLN-DTISKIINYRFKNDAILEEALTHPSLNKRNSKNQIENYERLEFLGDSILNMIVS 69 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +LF F KEG L+ R LV T + VA+E+ L +FI +++ R + Sbjct: 70 AILFRLFPKEKEGALARRKTDLVCGNTIANVAKEIKLGNFIIMNNSERCNGGKRNLKNLE 129 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + +E+LI A+Y+DGG FV K+W++RA +D KT LQEW PEY+ Sbjct: 130 NALEALIGAIYIDGGFANVKKFVTKHWEERAKGMLSLPQDPKTSLQEWTQKNKLPLPEYE 189 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + ++GP H P FT+ + I SK+ AEQ AA +L++ Sbjct: 190 LMKQTGPAHSPEFTISICIENYGKVFACASSKKVAEQKAAELMLEK 235 >gi|163740176|ref|ZP_02147570.1| ribonuclease III [Phaeobacter gallaeciensis 2.10] gi|161386034|gb|EDQ10409.1| ribonuclease III [Phaeobacter gallaeciensis 2.10] Length = 228 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 86/216 (39%), Positives = 129/216 (59%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 E RIGY+F+ +LL +ALTH+S+S ++ +RLEFLGDR+LGL+++T L + +A Sbjct: 9 AFETRIGYSFSQPALLVRALTHASVSSPNRQDNQRLEFLGDRVLGLVMATALLDTDKAAT 68 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+L+ RFN+LV ETC+ VAR++DL + +++ ++ D +E++IAA+Y Sbjct: 69 EGQLAPRFNALVRKETCADVARDIDLGAVLKLGRSETMSGGRRKLALLGDAMEAVIAAVY 128 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 DGG + A + + W R + RD KT LQE+A A+ P Y + R GPDH P Sbjct: 129 KDGGFDAAQELILRLWGNRIGRVEADARDPKTTLQEFAQARGEQPPAYVLVERKGPDHQP 188 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 FT+ V++ + SKR AEQ AA +L R Sbjct: 189 EFTISVQLQDGTEGRATAGSKRQAEQAAAKFLLARL 224 >gi|163793042|ref|ZP_02187018.1| SsrA-binding protein [alpha proteobacterium BAL199] gi|159181688|gb|EDP66200.1| SsrA-binding protein [alpha proteobacterium BAL199] Length = 227 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 85/217 (39%), Positives = 123/217 (56%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S L + +G+ F + +L +A+TH+S +YERLEFLGDR+L L ++ L + F Sbjct: 7 DLSHLAEVLGHTFNHPDILRRAVTHASAEPRAWNAYERLEFLGDRVLALAVAEQLLDRFP 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG ++ R SLV ET + VA +DL ++ VS +I +D +E++IA Sbjct: 67 HEREGAIAKRHVSLVRRETLADVAHTIDLGRYLIVSRGEDDAGARASDTILSDSMEAVIA 126 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 ALYLDGG+ A F+ K+W + +D KT LQEWA + P Y ++GP Sbjct: 127 ALYLDGGLAAAQKFILKHWNPLLEMDHRPPQDPKTGLQEWAQGRRLPLPVYTTVEQTGPA 186 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H P FTV V + GLAP + SKR AEQ+AAA +L+ Sbjct: 187 HAPEFTVEVVVEGLAPQRASGKSKRLAEQLAAAAMLE 223 >gi|126733741|ref|ZP_01749488.1| ribonuclease III [Roseobacter sp. CCS2] gi|126716607|gb|EBA13471.1| ribonuclease III [Roseobacter sp. CCS2] Length = 226 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 85/220 (38%), Positives = 130/220 (59%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + +R+G++F +L +A+THSSI +++ +RLEFLGDR+LGL+++ L Sbjct: 4 SAELTAFSQRLGHSFDKPEILIRAVTHSSIVSPHRDDNQRLEFLGDRVLGLVMAEALLKA 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 SA EG L+ R+N+LV E C++VAR++DL + +++ K ++ AD +E++ Sbjct: 64 DPSAPEGLLAPRYNALVRREACAEVARQIDLGAVLKLGRSEMKSGGRRKEALLADAMEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+Y DGG + A + + W R RDAKT LQEWA A+ V P+Y R+G Sbjct: 124 IAAVYQDGGFDAARAAILRLWGDRIHNVAADARDAKTALQEWAQARGEVPPQYVEVARTG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 PDH P FT+ ++ Q SKR AEQ AA +LK+ Sbjct: 184 PDHQPVFTIEARLASGPSEQATAGSKRQAEQAAATALLKK 223 >gi|331701485|ref|YP_004398444.1| ribonuclease 3 [Lactobacillus buchneri NRRL B-30929] gi|329128828|gb|AEB73381.1| Ribonuclease 3 [Lactobacillus buchneri NRRL B-30929] Length = 236 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 110/219 (50%), Gaps = 5/219 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L++ G ++ LL++A T +S + ++ + YERLEFLGD +L L++S +F + Sbjct: 9 LKQDFGIHIDDQDLLDEAFTQASYVNEHRGEGLKFYERLEFLGDAVLQLIVSDYIFKRYP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G L+ ++V+ ++ S ARE +IR+ K S+ D+ ES + Sbjct: 69 KMPQGRLTRLRAAMVNEQSFSTFARECHFNQYIRLGKGEEKAGARDRDSLLCDIFESFVG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 LYLD G FV K + + D KTELQE A A V +Y++ GP Sbjct: 129 CLYLDQGQAEVTRFVTKVIFPKLDEGMFAEFFDHKTELQELAQADGPVAIDYELVDEYGP 188 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 D+D F V V I G G+ SK+ AEQ AA + L++ Sbjct: 189 DNDRSFKVNVSIDGKLYGVGIGHSKKGAEQKAAQQALEQ 227 >gi|254463926|ref|ZP_05077337.1| ribonuclease III [Rhodobacterales bacterium Y4I] gi|206684834|gb|EDZ45316.1| ribonuclease III [Rhodobacterales bacterium Y4I] Length = 225 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 89/222 (40%), Positives = 131/222 (59%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E+RIG+ FA LL++A+TH+S+S S ++ +RLEFLGDR+LGL+++T L H Sbjct: 4 SKELRAFEERIGHKFARPELLQRAVTHASVSSSNRKDNQRLEFLGDRVLGLVMATALLEH 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 +A EG+L+ RFN+LV E C+ VA+E+DL + +++ ++ D +E++ Sbjct: 64 DKTATEGQLAPRFNALVRKEACADVAKEIDLGAVLKLGRSEMMSGGRRKQALLGDAMEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+Y D G + A + + W R + RDAKT LQEWA A+ P Y RSG Sbjct: 124 IAAVYKDAGFDAAAEMILRLWGTRIHQVETDARDAKTSLQEWAQARGQQVPIYVEVSRSG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH P FT+ + AQ SKR AEQ AA +L++ G Sbjct: 184 PDHAPVFTIAARLQDGTEAQATAGSKRQAEQAAAKALLEQLG 225 >gi|172057915|ref|YP_001814375.1| ribonuclease III [Exiguobacterium sibiricum 255-15] gi|171990436|gb|ACB61358.1| Ribonuclease III [Exiguobacterium sibiricum 255-15] Length = 256 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 108/220 (49%), Gaps = 4/220 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 ++ L++R+ FAN LL++A THSS + +E ERLEFLGD +L L +S LF Sbjct: 30 KFGQLQERLDIHFANVELLKQAFTHSSFVNEQRESDGDNERLEFLGDAVLELTVSRYLFQ 89 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H+ EGEL+ ++V + Q A + + I + ++ ADV E+ Sbjct: 90 HYPERSEGELTKLRAAIVCEPSLVQFANHYEFSEMILLGKGEELTGGRNRPALLADVFEA 149 Query: 122 LIAALYLDGGIEVAGTFV-DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD GIE A F+ + + + A + + D K++LQE EY++ Sbjct: 150 FIGALYLDQGIEAAERFLAEAVFPKVASGFFEEQTDFKSQLQEAIQRVGLGQIEYEIIEE 209 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP H F V I+ G SK+ AEQ AA + L Sbjct: 210 RGPAHSREFISRVHIADKLEGIGTGRSKKEAEQQAAKQAL 249 >gi|257468859|ref|ZP_05632953.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185] gi|317063109|ref|ZP_07927594.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185] gi|313688785|gb|EFS25620.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185] Length = 235 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 7/229 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60 Y LE +GY+F N+ LL+ +L H S + + + S ERLE LGD +L L+++ L+ Sbjct: 4 NYLELEGNLGYSFNNKELLKNSLIHRSFGNEHWRYKKISNERLELLGDAVLDLVVTEYLY 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +S+ EG+L+ + +VS + +++++D+ ++ +S +SI D E Sbjct: 64 KSHESSTEGDLAKIKSMVVSEPVLASISKKMDVGKYLLLSKGEEMTGGRERSSILGDAFE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+YLD E A + + + + + D KT LQE++ ++ + P Y+V Sbjct: 124 AILGAIYLDSDFETAKKYALSHIQDSIDHVDKNEDILDFKTILQEYSQREYKIIPSYEVI 183 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 +GPDH F + V+I +G +K++AEQ AA E+ K+ G+ T Sbjct: 184 RETGPDHQKIFEIEVKIGDRT-GRGTGKNKKSAEQSAAKELCKKLGVKT 231 >gi|262037510|ref|ZP_06010969.1| ribonuclease III [Leptotrichia goodfellowii F0264] gi|261748440|gb|EEY35820.1| ribonuclease III [Leptotrichia goodfellowii F0264] Length = 238 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 111/227 (48%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M L ++I Y F N S L++ALTH S S+ +++ E+LEFLGD +L L+ + Sbjct: 1 MKIKNVEELMEKIDYKFRNESYLKEALTHRSFSNEHEKSKNFDNEKLEFLGDAVLNLITT 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++N EGEL+ + ++S S +A E+ L ++ +S+ SI Sbjct: 61 EYIYNSGKGKNEGELAKLKSQIISEPVFSAIAAEIGLGDYLYLSNGEESSGGRKRKSILG 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174 D E+LI A++LD A K+ + D KT LQE +K+ PE Sbjct: 121 DAFEALIGAVFLDSDYYTAKNTALKFLPDKINNLEDIEGIIDYKTVLQEVFQSKYKKMPE 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y++ GPDH+ F + V+++ G SK+ AE+ AA E ++ Sbjct: 181 YEILDTKGPDHNKVFEISVKLNNKIIGIGRGKSKKEAEKRAAKEAIE 227 >gi|237752001|ref|ZP_04582481.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430] gi|229376568|gb|EEO26659.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430] Length = 223 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + EK +GY F ++LL++ALTH S ERLEFLGD +L L+I L+N F Sbjct: 2 VNLKHFEKTLGYHFKAQNLLKEALTHKSAKKGT--HNERLEFLGDAVLDLIIGEFLYNKF 59 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +++EGELS S+V+ + +++AR L++ ++ +S+ ++ SI ++ E++I Sbjct: 60 PNSREGELSKMRASMVNEKAFAKIARYLNIGEYLFISNSEEQNNGRKKDSILSNAFEAVI 119 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YL+ G+++A + ++ D KT LQE AKFG TPEY + S Sbjct: 120 GAIYLESGLDIARNLMHNLLSAVYPSIDLNSLFYDHKTALQELTQAKFGETPEYVLLDSS 179 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH+ F + V+I G A+ SK+ A+Q+ A ++ Sbjct: 180 GPDHNKNFLIGVKIQGKEFAKASGKSKKEAQQICAKIAIEAL 221 >gi|116331646|ref|YP_801364.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280610|sp|Q04R64|RNC_LEPBJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116125335|gb|ABJ76606.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 247 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 113/223 (50%), Gaps = 5/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 + L K+IG F+ A HSS + E ERLEFLGD +LGL+ + LF Sbjct: 20 SFKKLSKKIGIKFSKIEYYNTAFIHSSYKNENPEILEDNERLEFLGDSVLGLVAARSLFQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + A EGELS + +VS + +A +L+L ++ + + I A++ ES Sbjct: 80 KYPKASEGELSRIKSKIVSTPILNSIAEKLNLGEYLLLGKGEKNSQGKGRRKIAANLFES 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A+YLD G EVA F+ ++ + A + RD KT+LQE++ F P Y++ Sbjct: 140 LVGAIYLDRGFEVAEKFIVQHLLEFAENPDMEESVRDYKTQLQEYSQKHFKTLPVYRMKG 199 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGPDH F V V I A G SK+ AEQ AA E+ R Sbjct: 200 ESGPDHSKTFQVSVRIRDQWEASGYGASKKIAEQNAAKELYIR 242 >gi|39997326|ref|NP_953277.1| ribonuclease III [Geobacter sulfurreducens PCA] gi|81701827|sp|Q74AX1|RNC_GEOSL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|39984217|gb|AAR35604.1| ribonuclease III [Geobacter sulfurreducens PCA] gi|298506263|gb|ADI84986.1| ribonuclease III [Geobacter sulfurreducens KN400] Length = 248 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 6/221 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LE IGY F +R L++ALTH S + + ERLEF GD ILG I +L H+ Sbjct: 19 LETSIGYRFTDRRFLDEALTHRSWLNEVRSPTVPDNERLEFFGDAILGFCIGKMLLRHYP 78 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 ++EG L+ ++LV ET + +A ++L S++R+ + S+ A+ +E+L+A Sbjct: 79 ESREGALARMKSALVGEETLADLAAAVELGSYLRLGRGEERSGGRHRRSLLANALEALLA 138 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLDGG+ VD ++ R + +G RD KT+ QE A A++G P Y + SG Sbjct: 139 AMYLDGGMAPVERLVDAWFGPRLAGVAAGIKGRDFKTDFQELAQAQYGGLPRYVLVDTSG 198 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P HD RFTV + QG SK+ AEQ AA + L+R Sbjct: 199 PAHDLRFTVAAYVGERLLGQGTGRSKKEAEQAAARQCLERL 239 >gi|289578474|ref|YP_003477101.1| ribonuclease III [Thermoanaerobacter italicus Ab9] gi|297544750|ref|YP_003677052.1| ribonuclease III [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528187|gb|ADD02539.1| ribonuclease III [Thermoanaerobacter italicus Ab9] gi|296842525|gb|ADH61041.1| ribonuclease III [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 246 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 75/210 (35%), Positives = 112/210 (53%), Gaps = 5/210 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFN 61 S LEK+I Y+F N+ LL +ALTHSS +H + S ERLEFLGD +L L+IS L+ Sbjct: 19 NLSELEKKINYSFKNKDLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEYLYK 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + +EG LS +V + ++ ARE+ L +F+ + S+ AD +E+ Sbjct: 79 NRKDLEEGSLSKYRAEIVCEPSLARCAREIGLGNFLLIGKGEEMTGGRERDSLLADAMEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+AA+YLDGG+EV + ++ + G RD KT+LQE + Y++ Sbjct: 139 LLAAVYLDGGLEVVRNIILDLFRNIIEEVLEGLIYRDYKTKLQEVVQSMGIGKITYELVK 198 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDH+ F V I +A +G SK+ Sbjct: 199 EIGPDHNKTFITKVRIGDVALGEGYGKSKK 228 >gi|218291547|ref|ZP_03495421.1| Ribonuclease III [Alicyclobacillus acidocaldarius LAA1] gi|258511329|ref|YP_003184763.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218238642|gb|EED05867.1| Ribonuclease III [Alicyclobacillus acidocaldarius LAA1] gi|257478055|gb|ACV58374.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 241 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L+ + F + +LL++A TH+S + ++ E ERLEFLGD +L L++S L+ Sbjct: 4 KWLELQGLLNLQFNDVNLLKQAFTHASYRNEHRKLHVEDNERLEFLGDAVLELVVSDFLY 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EGEL+ ++V + + A+ L +IR+ + ++ ADV E Sbjct: 64 RTYPKMPEGELTRMRAAIVCEASLVRFAKRLSFDQYIRLGRGEERSGGRSRPALLADVFE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + + ALYLD G+E FV + L D KT LQE + Y + Sbjct: 124 AFLGALYLDQGLEAVRQFVHTHMVP-YLPDVSAGLDYKTALQELVQQRHQTPVRYVIVEE 182 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H F V VE+ G G+ SK+ Sbjct: 183 RGPAHAREFVVQVELGGEVRGVGIGRSKK 211 >gi|218960589|ref|YP_001740364.1| dsRNA-specific ribonuclease [Candidatus Cloacamonas acidaminovorans] gi|167729246|emb|CAO80157.1| dsRNA-specific ribonuclease [Candidatus Cloacamonas acidaminovorans] Length = 255 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 8/229 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY------ERLEFLGDRILGLLISTL 58 S L+K+I Y F + +LL ALTH S H + E + ER+EFLGD ILG ++S Sbjct: 27 SLSQLQKKIDYTFHDPTLLYAALTHKSYLHRHFEDHKTPSPFERMEFLGDSILGFIVSKE 86 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF +EG+LS + +VS + A+ +DL ++ +S + ++ + SI +D Sbjct: 87 LFTRHPDEQEGKLSKLKSKIVSETYLTLKAKAIDLGKYLLLSPEEQQSGGASKPSILSDA 146 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYK 176 +E+LI A+YLD GI A F+ + ++ + K+ LQE+ ++ P Y Sbjct: 147 MEALICAIYLDSGISAATRFIRNHILNNYQETVTREELVNYKSILQEYMQSRNQPPPTYV 206 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GP+H F V V G +K+ A Q AA ++ GI Sbjct: 207 TVAEQGPEHHKTFVVEVRWGNKLLGTGKGNTKKNAHQEAARMACQKLGI 255 >gi|88608789|ref|YP_506782.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama] gi|88600958|gb|ABD46426.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama] Length = 222 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 121/220 (55%), Gaps = 3/220 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L+ +G F N+ LL +ALTH S+ SYERLEFLGD +L L+I+++L++ F Sbjct: 1 MELEELQSLLGVYFKNKDLLVEALTHPSV--EKCPSYERLEFLGDAVLNLVIASMLYDLF 58 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS R ++L+ T + +AR+++L +IR+SS TS +V+E+L+ Sbjct: 59 PGDPEGRLSHRQSALICKNTLAMLARQMNLGDYIRLSSSEEAGGGRDKTSNLENVLEALV 118 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++LD G+E F+ K W A++S + K+ LQE AK P Y V RSGP Sbjct: 119 GAIFLDAGLETVTCFIKKRWYGLAVQSDSIEPNPKSTLQELLQAKGMKPPIYNVINRSGP 178 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H P F + + + G + SK+ E+ AA +L+ Sbjct: 179 AHLPIFEIEIRVDGKKR-RATGKSKKLGEENAARMMLEEL 217 >gi|90416440|ref|ZP_01224371.1| ribonuclease III [marine gamma proteobacterium HTCC2207] gi|90331639|gb|EAS46867.1| ribonuclease III [marine gamma proteobacterium HTCC2207] Length = 225 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 A L+ R+ Y F++ LL AL+H S + + ERLEFLGD +LG+ IS+ LF Sbjct: 2 ASNAKQLQDRLQYQFSDPQLLTLALSHRSCGSN---NNERLEFLGDAVLGMAISSFLFQR 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+LS + +V AE+ +++AR+LDL + + K SI D VE+L Sbjct: 59 FPEAREGDLSRIRSQVVRAESLAEIARKLDLGPELLLGPGEMKSGGHRRDSILGDTVEAL 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A++LD G+ V ++ L +DAKT LQEW A+ PEY+V Sbjct: 119 LGAVFLDQGLVAVEACVQNWFGASLNTLTLDTPVKDAKTALQEWLQARGKPLPEYRVVKT 178 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G DH FT+ +I + A+ S+R AEQ+ A +++K+ Sbjct: 179 EGEDHSRLFTMSCKIDAVDETAEATASSRRKAEQLVAEKLVKKL 222 >gi|262373078|ref|ZP_06066357.1| ribonuclease III [Acinetobacter junii SH205] gi|262313103|gb|EEY94188.1| ribonuclease III [Acinetobacter junii SH205] Length = 232 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 122/223 (54%), Gaps = 5/223 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L + L+ RIG+ F LL+ ALTH S+SH + +YERLEFLGD +LG++I+ L++ Sbjct: 8 NKLNDARLQNRIGHQFQQFDLLKLALTHRSVSHKH--NYERLEFLGDSLLGMIIANYLYH 65 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ +LV E ++A +L L+ + +S+ K SI AD VE+ Sbjct: 66 TYPKENEGRLTRMRATLVRQEALGKIANDLQLSRSLILSTGELKSGGHHRESILADTVEA 125 Query: 122 LIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +I A+YLD + + + V K+++ ++ +D K+ LQE+ A+ P Y+V Sbjct: 126 IIGAIYLDSNDLNLLQSIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVV 185 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 G + F V + G+ G S+R AEQ AAAE+LK Sbjct: 186 DIQGDAPNQHFKVECNVEGMPKFIGEGSSRRFAEQTAAAEILK 228 >gi|227112907|ref|ZP_03826563.1| ribonuclease III [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|253689440|ref|YP_003018630.1| ribonuclease III [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259491904|sp|C6DC00|RNC_PECCP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|251756018|gb|ACT14094.1| ribonuclease III [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 226 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 70/213 (32%), Positives = 111/213 (52%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQRKLGYTFQQYELLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRA 210 G HD FT+ ++SG + + G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRK 210 >gi|89053013|ref|YP_508464.1| ribonuclease III [Jannaschia sp. CCS1] gi|122499604|sp|Q28V23|RNC_JANSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|88862562|gb|ABD53439.1| RNAse III [Jannaschia sp. CCS1] Length = 227 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 91/224 (40%), Positives = 128/224 (57%), Gaps = 1/224 (0%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M R + R+GY F + +LL +ALTHSS+S + +RLEFLGDR+LGL+++ + Sbjct: 1 MKPARELTAFMDRLGYVFEDPALLARALTHSSLSSPTRGDNQRLEFLGDRVLGLVMAEAV 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 AKEG L+ RFN+LV E C+ VAR++DL + +R+ ++ D + Sbjct: 61 LAADTDAKEGTLAPRFNALVRKEACADVARQIDLGAAMRLGKSEMSAGGRRRMALLGDAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+YLDGG A V + W +R + RDAKT LQEWA A+ P Y Sbjct: 121 EAVIAAVYLDGGFASARDLVLRLWSERVQSVEEDARDAKTALQEWAQARGMAPPTYTEVA 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RSGPDH P F V V +S A+ +KR AEQ AA ++L + Sbjct: 181 RSGPDHAPVFRVRVTLSSGENAEAQAKAKRQAEQQAAKDLLAQL 224 >gi|254418789|ref|ZP_05032513.1| ribonuclease III [Brevundimonas sp. BAL3] gi|196184966|gb|EDX79942.1| ribonuclease III [Brevundimonas sp. BAL3] Length = 236 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 92/235 (39%), Positives = 136/235 (57%), Gaps = 10/235 (4%) Query: 1 MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISH------SYQESYERLEFLGDRIL 51 M+ LR + L+ RIG+AF + +LLE+ALTH+S+ ERLEFLGDR+L Sbjct: 1 MANLRAEAVAALQTRIGHAFRDAALLERALTHASVGEGAPVGVHGPRDNERLEFLGDRVL 60 Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 GLL++ L + +A EG+LS ++LV C++V L + + +R+S K Sbjct: 61 GLLVAEKLSRDYPTANEGQLSSSLHALVDKTACARVGEALGVGAALRLSPGETKTGGRRK 120 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFG 170 + AD VE+++AA+YLDGG+E A F DK W + + + + K+ LQEWA AK Sbjct: 121 AGVIADAVEAILAAVYLDGGLEAARAFFDKAWAEEFSAPPSRTVTNPKSALQEWAQAKGR 180 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P Y+V R+G DH P FT+ V + G+ P S++ AE+ AA +LKREG+ Sbjct: 181 PLPTYRVADRTGSDHAPTFTIEVSVEGVEPLTAQGRSRQEAEKAAATALLKREGV 235 >gi|188585989|ref|YP_001917534.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF] gi|229564354|sp|B2A2N1|RNC_NATTJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|179350676|gb|ACB84946.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF] Length = 230 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 111/223 (49%), Gaps = 5/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 L++++G ++ LL +A+TH+S +H ++ ERLEFLGD +L L IS L+ Sbjct: 7 DIVELKEKLGIYVDDK-LLLQAVTHTSYAHEQKDVVDHNERLEFLGDAVLELAISETLYK 65 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGEL+ LV + ++A +LDL ++R+ S AD VE+ Sbjct: 66 KYPELPEGELTKLRAELVCELSLVKIAEKLDLGKYLRLGKGEDSTGGRDRRSTLADTVEA 125 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFR 180 LI A+YL + + +K + R D KT +QE ++G P+Y++ Sbjct: 126 LIGAVYLQTNYDQTKQLILDLFKDQLSHIDNQRIGDYKTMIQELVQDRYGDPPKYQIVKE 185 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDHD F V+I+ +G SK+ AEQ AA ++ Sbjct: 186 SGPDHDKSFVAEVQINNEVVGRGSGKSKKEAEQNAAHFAFQKL 228 >gi|323142424|ref|ZP_08077250.1| ribonuclease III [Phascolarctobacterium sp. YIT 12067] gi|322413117|gb|EFY04010.1| ribonuclease III [Phascolarctobacterium sp. YIT 12067] Length = 239 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 108/226 (47%), Gaps = 7/226 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLL 59 + + + +G + LL+ ALTH+S +H ++ ER+EFLGD +L +++ST + Sbjct: 8 QLQSFCQGLGIHMHDLELLDMALTHTSYAHEAKQYPKPHHNERIEFLGDSVLSVIVSTYM 67 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + +F EG+L+ LV + + A+++ L ++++ SI AD Sbjct: 68 YKNFPDLAEGQLTKLRAYLVCEGSLYEYAKKIHLGDYLQLGKGEELSGGRERPSILADAF 127 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ES++ A+YLD G EV ++ + + D KT LQE+ Y + Sbjct: 128 ESVLGAIYLDQGFEVVQAYLLGMMQSEIDFICRHGIFNDYKTRLQEYLQRDGDADIHYVL 187 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP+H+ FT V + +G +K+ +EQ AA + L + Sbjct: 188 LGSTGPEHNKVFTSQVMLGNTVIGEGSGRTKKDSEQHAAKQALAQL 233 >gi|85059765|ref|YP_455467.1| ribonuclease III [Sodalis glossinidius str. 'morsitans'] gi|123519061|sp|Q2NS13|RNC_SODGM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|84780285|dbj|BAE75062.1| ribonuclease III [Sodalis glossinidius str. 'morsitans'] Length = 226 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 111/213 (52%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+K++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILTNRLQKKLGYTFQQHDLLLQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 QRFPRVDEGDMSRMRATLVRGNTLAEMAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + +++ R + G ++D KT LQE+ + P Y+V Sbjct: 118 ALIGGVFLDSDIRTVEKLILDWYRSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYQVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210 G HD FT+ ++SGLA P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLAQPVVGNGSSRRK 210 >gi|15595050|ref|NP_212839.1| ribonuclease III [Borrelia burgdorferi B31] gi|7531188|sp|O51648|RNC_BORBU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|2688625|gb|AAC67040.1| ribonuclease III (rnc) [Borrelia burgdorferi B31] Length = 246 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFN 61 + S + + F+N LL AL HSS S+ + ERLEFLGD +L L+I+ L+ Sbjct: 18 QLSKFLENLSIDFSNFDLLNTALCHSSYSNELDQKSSNNERLEFLGDSVLNLIITDHLYK 77 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGELS + +VS ++ S +ARE++L S+I + + I AD +E+ Sbjct: 78 TYPNKSEGELSKARSYIVSEDSLSNIAREINLGSYILLGRGEESNDGRNKKGILADAIEA 137 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + A+YLD G A FV + R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 138 FVGAIYLDSGFSRATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKLDK 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V + + + G SK+ AE AA LK Sbjct: 198 EIGPDHDKVFCVELYVGENFISNGKGKSKKEAEMRAAEVALKAM 241 >gi|253988786|ref|YP_003040142.1| ribonuclease III [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780236|emb|CAQ83397.1| ribonuclease III [Photorhabdus asymbiotica] Length = 226 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 112/213 (52%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFDQHDLLIQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGYRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++++ R + G ++D KT LQE+ P Y V Sbjct: 118 ALIGGIFLDSDIQTVERTILRWYETRLNEISPGDKQKDPKTRLQEYLQGHHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210 G HD FT+ ++SG+ P +G S+R Sbjct: 178 MVRGEAHDQEFTIHCQVSGIEQPVKGTGSSRRK 210 >gi|71907657|ref|YP_285244.1| ribonuclease III [Dechloromonas aromatica RCB] gi|90101622|sp|Q47EF7|RNC_DECAR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71847278|gb|AAZ46774.1| RNAse III [Dechloromonas aromatica RCB] Length = 222 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 79/216 (36%), Positives = 119/216 (55%), Gaps = 6/216 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 K++ + F++++L ALTH S + ERLEFLGD +L +I+ L++ F EG+ Sbjct: 8 KKLNHCFSDQALFRTALTHRSFG---TPNNERLEFLGDGVLDFVIAASLYHRFPDLPEGD 64 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 LS +LV ET ++A EL++ +F+R+ K + SI AD +E+L A+YLD Sbjct: 65 LSRLRANLVRQETLHRLALELNIGAFLRLGEGELKSGGAQRPSILADALEALFGAIYLDA 124 Query: 131 GIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G E + ++K + LK G+F++DAKT LQEW + P Y + +G H+ R Sbjct: 125 GFEASRAVIEKLFAPLLDDLKPGQFQKDAKTRLQEWLQGRKKALPRYHLLEATGAAHEQR 184 Query: 189 FTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 F + EI A G S+R AEQVAA + LK Sbjct: 185 FEIACEIESPALRTVGHGSSRRIAEQVAAEKALKEL 220 >gi|57234229|ref|YP_181741.1| ribonuclease III [Dehalococcoides ethenogenes 195] gi|90101623|sp|Q3Z7Q8|RNC_DEHE1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|57224677|gb|AAW39734.1| ribonuclease III [Dehalococcoides ethenogenes 195] Length = 237 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 L + LEK +G F N SLLE+AL H+S + S ER+EFLGD +LG++ + L Sbjct: 2 LDLTELEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRL 61 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F +EG+L+ + LV E+ +VA ++L ++ + F + A Sbjct: 62 YHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDASKGRFKPANLAGAF 121 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E+++AA+YLD GI+ + + +K + D K+ LQE A+F +TP Y++ Sbjct: 122 EAVLAAIYLDKGIDATREVIFRLFKTEMERVQTLSSNIDYKSRLQELVQAQFQLTPRYRI 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGP+H+ F V A+G SK+ AE AA E L++ Sbjct: 182 IDFSGPEHNHLFIAEVYTEDKVLAEGSGRSKKEAETSAAKEALQQ 226 >gi|83858196|ref|ZP_00951718.1| ribonuclease III [Oceanicaulis alexandrii HTCC2633] gi|83853019|gb|EAP90871.1| ribonuclease III [Oceanicaulis alexandrii HTCC2633] Length = 228 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 94/221 (42%), Positives = 132/221 (59%), Gaps = 2/221 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 R E RI Y F +R LLE+ALTH+S S ERLEFLGDR+LGL+ S L+ Sbjct: 4 RIKDFEARINYRFKDRELLERALTHASHGDGRSRAASNERLEFLGDRVLGLMASQRLYET 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F + +EG L+ R N++V+ C++ AR DL +R+S+ + SI AD E++ Sbjct: 64 FPNLEEGGLAQRLNAVVNKSACARAARRCDLGEGLRLSAAEERLGGREKESIIADACEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I ALYLDGG++ A F +W + + +DAK++LQEWA K P Y+ R G Sbjct: 124 IGALYLDGGLDAAWAFFTTFWADEIDQLTRRPKDAKSQLQEWAAQKGYGVPVYETVARKG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH P F + V + G+APA+G SK+ A++ AA+E+LKRE Sbjct: 184 PDHRPVFEIEVRLDGVAPARGEGGSKQDAQRAAASEMLKRE 224 >gi|332685822|ref|YP_004455596.1| ribonuclease III [Melissococcus plutonius ATCC 35311] gi|332369831|dbj|BAK20787.1| ribonuclease III [Melissococcus plutonius ATCC 35311] Length = 230 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 5/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L++R G F + +LLE+A THSS + ++ ER+EFLGD +L L+IS Sbjct: 1 MDDRLTKELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERIEFLGDAVLELIIS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + + EG+L+ ++V ++ ++ A+E +I + + +++ Sbjct: 61 QYLYQKYQNLPEGKLTKMRAAIVREDSLAKFAKECQFDQYILLGNGEENSGGRERSALLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD GIE F+ + + + D KT LQE K V +Y Sbjct: 121 DLFEAFLGALYLDQGIETVKYFISEIIFPKIEEGNFSHEVDHKTHLQEVLQHKGDVNIDY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++ GP HD F + +G SK+ AEQ AA LK Sbjct: 181 RLVDEKGPAHDRIFYTEIYADEKLIGRGHGRSKKLAEQDAAERALK 226 >gi|330446941|ref|ZP_08310592.1| ribonuclease III [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491132|dbj|GAA05089.1| ribonuclease III [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 224 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 110/207 (53%), Gaps = 6/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L++++GY F N L+ ALTH S + ++ ERLEFLGD IL +++ L++ F S Sbjct: 6 NRLQRKLGYQFNNSELMTLALTHRSANGNH---NERLEFLGDSILSFVVADDLYHRFPSV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV +T +++ RE +L + + K SI AD VE++I A+ Sbjct: 63 DEGDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFRRDSILADCVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD IE V ++K R ++ G ++D KT LQE + P Y V G Sbjct: 123 YLDSDIEKVREIVLTWYKTRLETIEPGINQKDPKTRLQECLQGRRLPLPAYTVIKVQGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210 H+ FTV +++GL P G S+R Sbjct: 183 HNQEFTVQCDVTGLDKPVIGKGGSRRK 209 >gi|195941524|ref|ZP_03086906.1| ribonuclease III (rnc) [Borrelia burgdorferi 80a] gi|216264636|ref|ZP_03436628.1| ribonuclease III [Borrelia burgdorferi 156a] gi|218249229|ref|YP_002375205.1| ribonuclease III [Borrelia burgdorferi ZS7] gi|221217995|ref|ZP_03589462.1| ribonuclease III [Borrelia burgdorferi 72a] gi|223889463|ref|ZP_03624049.1| ribonuclease III [Borrelia burgdorferi 64b] gi|224532354|ref|ZP_03672984.1| ribonuclease III [Borrelia burgdorferi WI91-23] gi|224533390|ref|ZP_03673984.1| ribonuclease III [Borrelia burgdorferi CA-11.2a] gi|225548949|ref|ZP_03769926.1| ribonuclease III [Borrelia burgdorferi 94a] gi|225549922|ref|ZP_03770883.1| ribonuclease III [Borrelia burgdorferi 118a] gi|226320458|ref|ZP_03796024.1| ribonuclease III [Borrelia burgdorferi 29805] gi|226321403|ref|ZP_03796930.1| ribonuclease III [Borrelia burgdorferi Bol26] gi|215981109|gb|EEC21916.1| ribonuclease III [Borrelia burgdorferi 156a] gi|218164417|gb|ACK74478.1| ribonuclease III [Borrelia burgdorferi ZS7] gi|221192301|gb|EEE18521.1| ribonuclease III [Borrelia burgdorferi 72a] gi|223885149|gb|EEF56253.1| ribonuclease III [Borrelia burgdorferi 64b] gi|224512661|gb|EEF83032.1| ribonuclease III [Borrelia burgdorferi WI91-23] gi|224513555|gb|EEF83912.1| ribonuclease III [Borrelia burgdorferi CA-11.2a] gi|225369381|gb|EEG98833.1| ribonuclease III [Borrelia burgdorferi 118a] gi|225370552|gb|EEG99988.1| ribonuclease III [Borrelia burgdorferi 94a] gi|226233199|gb|EEH31951.1| ribonuclease III [Borrelia burgdorferi Bol26] gi|226234100|gb|EEH32815.1| ribonuclease III [Borrelia burgdorferi 29805] gi|312147960|gb|ADQ30619.1| ribonuclease III [Borrelia burgdorferi JD1] gi|312148997|gb|ADQ29068.1| ribonuclease III [Borrelia burgdorferi N40] Length = 245 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFN 61 + S + + F+N LL AL HSS S+ + ERLEFLGD +L L+I+ L+ Sbjct: 17 QLSKFLENLSIDFSNFDLLNTALCHSSYSNELDQKSSNNERLEFLGDSVLNLIITDHLYK 76 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGELS + +VS ++ S +ARE++L S+I + + I AD +E+ Sbjct: 77 TYPNKSEGELSKARSYIVSEDSLSNIAREINLGSYILLGRGEESNDGRNKKGILADAIEA 136 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + A+YLD G A FV + R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 137 FVGAIYLDSGFSRATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKLDK 196 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V + + + G SK+ AE AA LK Sbjct: 197 EIGPDHDKVFCVELYVGENFISNGKGKSKKEAEMRAAEVALKAM 240 >gi|332976630|gb|EGK13471.1| ribonuclease III [Desmospora sp. 8437] Length = 231 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTL 58 + + L + IG + N+ L +A TH+S +H +Q ERLEFLGD +L L +S Sbjct: 1 MNLAELGQTIGLSLQNKELFLQAFTHTSFAHERKGERHQPDNERLEFLGDAVLELTVSEH 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L++ F KEG+L+ +V + + AR+L+ +R+ ++ ADV Sbjct: 61 LYHRFPHLKEGDLTRMRARIVCEPSLASFARDLNFGKHVRLGKGEELTGGRNRPALLADV 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ I ALYL+ G++ F+++ R DAK+ LQE + + Y++ Sbjct: 121 FEAFIGALYLEKGLDGVIDFMNRVILPRIDDQWLAQGSDAKSRLQEAVQQEHLGSLVYQI 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP HD +F V +SG G SK+ AEQ AAAE L+R Sbjct: 181 VDVQGPAHDRQFVAEVWLSGEKLGTGAGRSKKEAEQQAAAEGLQR 225 >gi|300724126|ref|YP_003713443.1| RNase III, ds RNA [Xenorhabdus nematophila ATCC 19061] gi|297630660|emb|CBJ91325.1| RNase III, ds RNA [Xenorhabdus nematophila ATCC 19061] Length = 226 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+A+ + L+ ++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNAILTNRLQHKLGYTFTQHDLLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD +E Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGHRRESILADSIE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGAIFLDSDIQTIEKIILNWYETRLNEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRA 210 G HD FT+ ++SG P +G+ S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGFEQPVRGVGSSRRK 210 >gi|148265180|ref|YP_001231886.1| ribonuclease III [Geobacter uraniireducens Rf4] gi|146398680|gb|ABQ27313.1| RNAse III [Geobacter uraniireducens Rf4] Length = 240 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61 + LE I Y FA+RSLL +ALTH S + + +RLEF GD ++ L+S +L Sbjct: 9 LAGLESAINYHFADRSLLTEALTHRSFVNESGGKWTKDNQRLEFFGDAVIDFLLSRMLLE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F ++EG L+ SLV + + +A E+ L +F+++ + S+ AD E+ Sbjct: 69 RFPDSREGALTKIRASLVDEGSLASLAEEIGLGAFLKLGRGEERSGGRRKRSLLADAYEA 128 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTF 179 L+AA+YLDGGIE V+ ++ + RD KTE QE AHA G P Y + Sbjct: 129 LMAAVYLDGGIEPVQRLVEAHFARLMAGREVLSAGRDYKTEFQELAHALRGSMPRYVLRG 188 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDH+ FTV + I +G SK+ AEQ AA E + R Sbjct: 189 ISGPDHERSFTVALFIGDERMGEGAGRSKKEAEQAAAREGIARL 232 >gi|262196731|ref|YP_003267940.1| ribonuclease III [Haliangium ochraceum DSM 14365] gi|262080078|gb|ACY16047.1| ribonuclease III [Haliangium ochraceum DSM 14365] Length = 282 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 80/216 (37%), Positives = 116/216 (53%), Gaps = 4/216 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLL 59 A+ S LE +G+ F R+LLE A+TH S ++ ERLEFLGD +L L + +L Sbjct: 42 AIDLSGLEDILGHRFRKRALLEAAVTHRSFANEQAVPCTDNERLEFLGDAVLDLAVGHML 101 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG LSV +VS + S++A L L +++R+ R+ SI AD + Sbjct: 102 MDVHPDLSEGRLSVTRAQIVSEKGLSEIAYGLGLGTYLRLGKGERRSGGQNKASILADSL 161 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVT 178 E++IAA+YLDGG + A V + + + + D KT LQE A A+ TP Y+V Sbjct: 162 EAVIAAVYLDGGFDAAWKLVARLFARTLEEVEISGFYDHKTRLQELAQARLKSTPAYRVV 221 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 +GPDH F VV EI G + + SK+ AEQ+ Sbjct: 222 DETGPDHAKLFEVVAEIDGREWGRAIGSSKKRAEQM 257 >gi|227824522|ref|ZP_03989354.1| ribonuclease [Acidaminococcus sp. D21] gi|226905021|gb|EEH90939.1| ribonuclease [Acidaminococcus sp. D21] Length = 238 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 112/238 (47%), Gaps = 14/238 (5%) Query: 1 MSALRYSTLEK---RIGYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILG 52 M R LE R+G + SL++ ALTHSS ++ +E +RLEFLGD +L Sbjct: 1 MRKERKEALESFLVRLGVTMQDLSLMDTALTHSSYAYECKEKVVPEFNQRLEFLGDSVLS 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L++ST L+ + EG LS LV ET +++A++L + ++ + + Sbjct: 61 LVVSTHLYLAYPEMDEGALSKFRAFLVCEETLAELAQDLAIGDYLLLGRGECHMGGRYNP 120 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFG 170 SI AD ES++ A YLD G E + + + L + RD KT QE A+ Sbjct: 121 SILADAFESVMGAYYLDAGYEKVRDLLTRVLIDKIPELTADGIDRDYKTRFQELIQAQGQ 180 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL----KREG 224 Y+ GP H+ F + V + G +K+ AEQ AA E L K++G Sbjct: 181 TDIHYEEAGFDGPPHNRTFFMKVIVGEKTYGTGSGRTKKLAEQRAAREALRLVKKKQG 238 >gi|118594601|ref|ZP_01551948.1| ribonuclease III [Methylophilales bacterium HTCC2181] gi|118440379|gb|EAV47006.1| ribonuclease III [Methylophilales bacterium HTCC2181] Length = 243 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 115/227 (50%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ + +E +G+ F +++L++ ALTH S E+ ERLEFLGD IL +++ LL+ Sbjct: 15 MNSNQIEQIESILGHTFKDKALIKIALTHRSA---KGENNERLEFLGDGILNFIVAELLY 71 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+LS + LV T +A+ L + F+ + K SI AD +E Sbjct: 72 VRFQQLSEGDLSRLRSQLVKESTLCDIAKNLTIGDFLLLGEGELKSAGWRRPSILADSLE 131 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD GI +F+++ + + + K +D K+ LQE+ K PEY V Sbjct: 132 AIIAAIYLDDGIGKVKSFIERRFNEHIITIDPNKIHKDDKSLLQEFLQGKKIAIPEYTVI 191 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREG 224 G H F V I L + G S++ AEQ AA L G Sbjct: 192 EIEGEPHAQVFEVKCRIPKLNIEKIGKGPSRKIAEQNAANLALIYLG 238 >gi|268593250|ref|ZP_06127471.1| ribonuclease III [Providencia rettgeri DSM 1131] gi|291311145|gb|EFE51598.1| ribonuclease III [Providencia rettgeri DSM 1131] Length = 226 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 111/213 (52%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L++++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPSLIERLQRKLGYQFKQNELLIQALTHRSASSKH---NERLEFLGDSILSFVIANDLY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R ++ G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIERIILDWYQSRLVEISPGDKQKDPKTRLQEYLQGRHLPLPNYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG+ P G+ S+R Sbjct: 178 QVKGEAHDQEFTIHCQVSGIDQPINGVGSSRRK 210 >gi|257126255|ref|YP_003164369.1| ribonuclease III [Leptotrichia buccalis C-1013-b] gi|257050194|gb|ACV39378.1| ribonuclease III [Leptotrichia buccalis C-1013-b] Length = 232 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 7/230 (3%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M+A + S L K+IGY F N+ LE+ALTH S S+ ++ + E+LEFLGD IL L+ Sbjct: 1 MTARKNSKDLIKKIGYEFKNKKYLEEALTHRSYSNEAEKTRRFNNEKLEFLGDAILNLIT 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + +++ + EGEL+ + ++S S +A ++ L ++ +S+ SI Sbjct: 61 TEYIYDLYGKKTEGELAKLKSQIISEPVFSTIASDIKLGEYLYLSNGEIMSGGRNRRSIL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTP 173 D E+LI A++ D A K+ + K + D KT LQE+ K+ P Sbjct: 121 GDAFEALIGAIFKDSDYYTAKNVALKFLLGKINKLEEIEGTGDYKTILQEFVQGKYKKMP 180 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 EYK+ GPDH+ F + V + G SK+ AE+ AA E L++ Sbjct: 181 EYKLLRTKGPDHNKVFEICVRWNDKIYGIGTGKSKKEAEKHAAKEALEKL 230 >gi|116327694|ref|YP_797414.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|122284510|sp|Q053L4|RNC_LEPBL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116120438|gb|ABJ78481.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 247 Score = 251 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 113/223 (50%), Gaps = 5/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 + L K+IG F+ A HSS + E ERLEFLGD +LGL+ + LF Sbjct: 20 SFKKLSKKIGIKFSKIEYYNTAFIHSSYKNENPEILEDNERLEFLGDSVLGLVAARSLFQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + A EGELS + +VS + +A +L+L ++ + + I A++ ES Sbjct: 80 KYPKASEGELSRIKSKIVSTPILNSIAEKLNLGEYLLLGKGEKNSQGKGRRKIAANLFES 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A+YLD G EVA F+ ++ + A + RD KT+LQE++ F P Y++ Sbjct: 140 LVGAIYLDRGFEVAEKFIVQHLLEFAENPDMEESVRDYKTQLQEYSQKHFKTLPVYRMKG 199 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGPDH F V V I A G SK+ AEQ AA E+ R Sbjct: 200 ESGPDHSKMFQVSVRIRDQWEASGYGASKKIAEQNAAKELYIR 242 >gi|183599777|ref|ZP_02961270.1| hypothetical protein PROSTU_03285 [Providencia stuartii ATCC 25827] gi|188022041|gb|EDU60081.1| hypothetical protein PROSTU_03285 [Providencia stuartii ATCC 25827] Length = 226 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 70/213 (32%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L++++GY F LL +ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPSLLEQLQRKLGYKFNQHDLLIQALTHRSANSKH---NERLEFLGDSILSFVIANDLY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIEKIILDWYQTRLNEISPGDKQKDPKTRLQEYLQGRHLPLPNYIVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210 G HD FT+ ++SG+ P G+ S+R Sbjct: 178 QVKGEAHDQEFTIHCQVSGIEQPINGVGSSRRK 210 >gi|78223520|ref|YP_385267.1| ribonuclease III:double-stranded RNA binding [Geobacter metallireducens GS-15] gi|90101627|sp|Q39T82|RNC_GEOMG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|78194775|gb|ABB32542.1| RNAse III [Geobacter metallireducens GS-15] Length = 246 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 118/223 (52%), Gaps = 7/223 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFN 61 + LE IGY F NR L +ALTH S + + ERLEFLGD +LGLL+ +LF Sbjct: 17 TELEAGIGYRFVNRQFLAEALTHRSWVNERRGEEGIRDNERLEFLGDAVLGLLVGKMLFA 76 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F ++EG L+ SLV ET + +A L + + + S+ A+ E+ Sbjct: 77 RFPQSREGVLARMKASLVGEETLAALASARGLGRHLLLGRGEERSGGRERRSLLANTYEA 136 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+AA+YLDGG+ V++ + + SG RD KTE QE +FG P Y++ Sbjct: 137 LLAAVYLDGGLGPVERIVEQDFSPLLAGIASGATGRDFKTEFQEMVQTRFGTAPTYELIA 196 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP HD RFTV+ ++G +G SK+ AEQ AA +VL R Sbjct: 197 TDGPPHDRRFTVIAMVAGKRMGEGAGRSKKEAEQAAARQVLAR 239 >gi|89075088|ref|ZP_01161529.1| ribonuclease III [Photobacterium sp. SKA34] gi|89049175|gb|EAR54740.1| ribonuclease III [Photobacterium sp. SKA34] Length = 239 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 111/207 (53%), Gaps = 6/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L++++GY F N L+ ALTH S + ++ ERLEFLGD IL +++ L++ F S Sbjct: 21 NRLQRKLGYQFNNCELMTLALTHRSANGTH---NERLEFLGDSILSFVVADDLYHRFPSV 77 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV +T +++ RE +L + + K SI AD VE++I A+ Sbjct: 78 DEGDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFRRDSILADCVEAIIGAI 137 Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E V ++K R ++ G ++D KT LQE + P Y VT G Sbjct: 138 YLDSDVEQVRRIVLAWYKTRLDTIEPGINQKDPKTRLQECLQGRRLPLPAYTVTKVQGEA 197 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210 H+ FTV +++GL P G S+R Sbjct: 198 HNQEFTVQCDVTGLDKPVIGKGGSRRK 224 >gi|147669550|ref|YP_001214368.1| ribonuclease III [Dehalococcoides sp. BAV1] gi|289432809|ref|YP_003462682.1| ribonuclease III [Dehalococcoides sp. GT] gi|146270498|gb|ABQ17490.1| RNAse III [Dehalococcoides sp. BAV1] gi|288946529|gb|ADC74226.1| ribonuclease III [Dehalococcoides sp. GT] Length = 248 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 L + LE +G F SLLE+AL H+S + S ER+EFLGD +LG++ + L Sbjct: 13 LDLTELENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGDAVLGVIFADRL 72 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F +EG+L+ + LV E+ +VA ++L ++ + F + A Sbjct: 73 YHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDVSKGRFKPANLAGAF 132 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E+++AA+Y+D G++V + + +K + D K+ LQE A+ +TP Y++ Sbjct: 133 EAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQELIQAQLQLTPRYRI 192 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 T SGP+H+ F V A+G SK+ AE AA L++ Sbjct: 193 TNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAAKVALQQ 237 >gi|78778218|ref|YP_394533.1| ribonuclease III [Sulfurimonas denitrificans DSM 1251] gi|78498758|gb|ABB45298.1| RNAse III [Sulfurimonas denitrificans DSM 1251] Length = 226 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 9/225 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS LE+ +GY F N+ L+ +ALTH S H ERLEFLGD +L L++ LF Sbjct: 1 MSK-NIEALEEILGYKFKNQKLIIEALTHKS--HKQPYDNERLEFLGDAVLDLIVGEYLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F S+ EG LS +LV+ + ++AR ++L +I +S+ + S+ ++ E Sbjct: 58 FKFASSDEGTLSKIRAALVNEDGFERLARSINLGEYIYLSNAEENNGGREKASLLSNAFE 117 Query: 121 SLIAALYLDGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 ++I A+YL+ G+++ +++ +++ +L S RD KT LQE A+FG TPEY Sbjct: 118 AMIGAIYLESGLDIVKPIAIGIIERNYQEISLDS--LFRDYKTTLQELTQARFGETPEYI 175 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V GPDH F V V I G A+ + SK+ A+Q AA +K Sbjct: 176 VVASRGPDHKKEFEVAVIIEGKEYARAIGKSKKIAQQEAAEMAVK 220 >gi|163814044|ref|ZP_02205436.1| hypothetical protein COPEUT_00197 [Coprococcus eutactus ATCC 27759] gi|158450493|gb|EDP27488.1| hypothetical protein COPEUT_00197 [Coprococcus eutactus ATCC 27759] Length = 232 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ Y LEK+IGY F + +LL ALTH+S ++ + +SYERLEFLGD IL ++S Sbjct: 4 MNR-NYDELEKKIGYQFKDINLLITALTHTSFANELKVNKTDSYERLEFLGDAILEYIVS 62 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF +EG L+ SLV T SQ++ L ++R+S SI Sbjct: 63 EYLFLKKKEYEEGRLTKLRASLVCEFTLSQISESLGYGDYVRLSKGEELTGGRKRKSILC 122 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D+ ES++ A+YLDGGIE A FV ++ +++ DAK+ LQE+ Y+ Sbjct: 123 DLFESVLGAMYLDGGIEPAKEFVHRFLLD-DVETKSLFYDAKSTLQEFCQKHGRQL-SYE 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GP+H F I+G A+G +++ +EQ+AA + L + Sbjct: 181 LIEERGPEHSKIFVSDAVINGKVTARGEGPNRKTSEQMAAYKTLLQL 227 >gi|37527216|ref|NP_930560.1| ribonuclease III [Photorhabdus luminescens subsp. laumondii TTO1] gi|81418780|sp|Q7N1X5|RNC_PHOLL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|36786650|emb|CAE15714.1| ribonuclease III (RNase III) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 226 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 112/213 (52%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFDQYDLLIQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGYRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A++LD I+ + +++ R + G ++D KT LQE+ P Y V Sbjct: 118 ALIGAIFLDSDIQSIERIILSWYETRLNEISPGDKQKDPKTRLQEYLQGHHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210 G HD FT+ ++SG+ P +G S+R Sbjct: 178 MVRGEAHDQEFTIHCQVSGIEQPVKGTGSSRRK 210 >gi|110633304|ref|YP_673512.1| ribonuclease III [Mesorhizobium sp. BNC1] gi|110284288|gb|ABG62347.1| RNAse III [Chelativorans sp. BNC1] Length = 238 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 106/221 (47%), Positives = 143/221 (64%), Gaps = 1/221 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +RIG +F + LLE+ALTHSS + Y+RLEFLGDR+LGL ++ +L+ + A Sbjct: 13 EAVNERIGLSFRDAELLERALTHSS-ARGKGGDYQRLEFLGDRVLGLAVAEMLYEAYPDA 71 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS+R NSLV+AET +++ EL L + IR SDL+ +++ADV+E+LIA + Sbjct: 72 SEGELSLRLNSLVNAETLAEITEELGLDTLIRTGSDLKALAMRKQVNLRADVLEALIAVI 131 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YL G++ A F+ +W +R+ G R DAKT LQEWAH TP+Y + R GPDHD Sbjct: 132 YLQDGLDGARQFIRTHWTERSTAEGAARADAKTALQEWAHRVSSATPDYVIESREGPDHD 191 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 P FT VV I+G +G SKR AEQ AA EVL RE +WT Sbjct: 192 PVFTAVVRIAGFQEGRGRGRSKREAEQAAATEVLIREAVWT 232 >gi|294139709|ref|YP_003555687.1| ribonuclease III [Shewanella violacea DSS12] gi|293326178|dbj|BAJ00909.1| ribonuclease III [Shewanella violacea DSS12] Length = 225 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 117/224 (52%), Gaps = 6/224 (2%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M ++ L + +GY F ++ L++ALTH S S + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNIPRLCRTLGYQFTQQAHLDQALTHRSASSKH---NERLEFLGDSILSIIISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F EG+LS +LV + +++ E L ++++ K SI AD V Sbjct: 58 YHQFPKVTEGDLSRMRATLVCGKMLAEIGFEFKLGDYLKLGPGELKSGGFRRESIIADGV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLD +E V +++ R A+ ++D KT LQE P YKVT Sbjct: 118 EAIIGAIYLDADLETCRARVLSWYESRLAIIEPINQKDPKTLLQELLQGFKKPLPVYKVT 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLK 221 G H FTV + P G+ S+R AEQ+AAA+VL+ Sbjct: 178 DIKGEAHAQTFTVECSVEELKKPLVGVASSRRKAEQIAAAQVLE 221 >gi|303256999|ref|ZP_07343013.1| ribonuclease III [Burkholderiales bacterium 1_1_47] gi|330999188|ref|ZP_08322907.1| ribonuclease III [Parasutterella excrementihominis YIT 11859] gi|302860490|gb|EFL83567.1| ribonuclease III [Burkholderiales bacterium 1_1_47] gi|329575388|gb|EGG56932.1| ribonuclease III [Parasutterella excrementihominis YIT 11859] Length = 228 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 114/225 (50%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 L + LE+RIGY F N+ LL +A+TH S S + ERLEFLGD +L +I LF Sbjct: 2 LPLTVLEERIGYTFKNKELLRRAMTHRSFSAEH---NERLEFLGDSVLNCVIGNALFLKD 58 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS ++LV +++A + ++ F++V + + + S AD VE++ Sbjct: 59 KHFDEGSLSRVRSNLVRQSALAEIAERIGISDFLKVGAGEKHTGGNHRPSTIADAVEAIF 118 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++ DGG E A T + + ++ L +DAKT LQE P Y + Sbjct: 119 GAVFTDGGFEEAQTVIIRLYEPMLSQLTPTTLGKDAKTNLQEVLQRMHFGLPLYDIVEIR 178 Query: 182 GPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225 G HD F V V+I L + G+ S+R AEQ AA + L E I Sbjct: 179 GAPHDQEFEVRVDIPDLGISLTGVGKSRRQAEQDAAQKALDSEAI 223 >gi|163760595|ref|ZP_02167676.1| putative ribonuclease III [Hoeflea phototrophica DFL-43] gi|162282210|gb|EDQ32500.1| putative ribonuclease III [Hoeflea phototrophica DFL-43] Length = 244 Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats. Identities = 131/217 (60%), Positives = 165/217 (76%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E+RIG+ F++ LE+ALTH+S + +YERLEFLGDR+LGL ++ LLF HF +A EG Sbjct: 16 EERIGHQFSSPVRLERALTHASTRTNTNGNYERLEFLGDRVLGLCVAELLFGHFGNATEG 75 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 E+SVR N LVSA+TCS+VA +L L FIR +D++K M +++ADVVESLIAA+YLD Sbjct: 76 EMSVRLNQLVSAQTCSEVADDLGLHEFIRTGADVKKLTGKRMANVRADVVESLIAAIYLD 135 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 G+E A +F+ K+WK RAL RRDAKTELQEWAHA+FGVTP Y+VT R+GPDH+P F Sbjct: 136 AGLEAARSFIHKHWKARALAEDGARRDAKTELQEWAHARFGVTPVYRVTDRAGPDHEPVF 195 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 TV VEI+G PA G SKRAAEQ AA VL+REG+W Sbjct: 196 TVTVEINGAKPASGESSSKRAAEQAAATAVLEREGVW 232 >gi|49081844|gb|AAT50322.1| PA0770 [synthetic construct] Length = 230 Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats. Identities = 79/216 (36%), Positives = 113/216 (52%), Gaps = 7/216 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS LE+++GY F +R L+ ALTH S + + ERLEFLGD IL +I LF Sbjct: 1 MSN-SLDRLERKLGYTFKDRDLMVLALTHRSYA---GRNNERLEFLGDAILNFVIGEALF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +HF A+EG+LS LV ET + +AR ++ ++R+ S K SI AD +E Sbjct: 57 HHFPQAREGQLSRLRARLVKGETLALLARGFEVGDYLRLGSGELKSGGFRRESILADAME 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD G++ A + + R L +D KT LQE+ ++ P Y+V Sbjct: 117 ALIGAIYLDTGMDSARERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRGCDLPRYEVV 176 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213 G H F V E++ L+ G S+R AEQ Sbjct: 177 DIQGEPHCRTFFVDCEVALLSDKTHGHGGSRRIAEQ 212 >gi|254283270|ref|ZP_04958238.1| ribonuclease III [gamma proteobacterium NOR51-B] gi|219679473|gb|EED35822.1| ribonuclease III [gamma proteobacterium NOR51-B] Length = 222 Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 5/222 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 +R +LE+ IGY F + +LL++ALTH S S + + ERLEFLGD ++ +++ LF F Sbjct: 1 MRRQSLEQAIGYHFRDSTLLQRALTHRSAS---RANNERLEFLGDSVINHIVAEALFLKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EG+L+ LV E + +A L+LA + + + RK SI AD VE++ Sbjct: 58 PDADEGQLTRLRAILVRGEYLAGLAHGLELADALILGAGERKSGGRQRRSILADAVEAIA 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+ +D V +++ + + +D KT LQEW A+ P Y + G Sbjct: 118 GAMLIDSEFATVRKVVLQWYHEGLDEITLDAVKDPKTRLQEWLQARGEELPSYDLVQVDG 177 Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223 DH FTV +++G A G S+R AEQ AA L+R Sbjct: 178 EDHRQSFTVTCQLAGRDLALTGRGSSRRRAEQAAAKATLERL 219 >gi|290476134|ref|YP_003469034.1| RNase III, ds RNA [Xenorhabdus bovienii SS-2004] gi|289175467|emb|CBJ82270.1| RNase III, ds RNA [Xenorhabdus bovienii SS-2004] Length = 226 Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 114/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+++ + L++++GY F LL +ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNSIIINRLQRKLGYTFIQHDLLLQALTHRSANSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD +E Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGHRRESILADSIE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGAIFLDSDIQTIERIILSWYETRLNEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRA 210 G HD FT+ +ISG P +G+ S+R Sbjct: 178 QVRGEAHDQEFTIHCQISGFEQPVRGVGSSRRK 210 >gi|33593415|ref|NP_881059.1| ribonuclease III [Bordetella pertussis Tohama I] gi|33597819|ref|NP_885462.1| ribonuclease III [Bordetella parapertussis 12822] gi|33602721|ref|NP_890281.1| ribonuclease III [Bordetella bronchiseptica RB50] gi|81424808|sp|Q7VW39|RNC_BORPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|81426476|sp|Q7W5J6|RNC_BORPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|81429935|sp|Q7WD32|RNC_BORBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|33572771|emb|CAE42703.1| ribonuclease III [Bordetella pertussis Tohama I] gi|33574248|emb|CAE38580.1| ribonuclease III [Bordetella parapertussis] gi|33577163|emb|CAE35720.1| ribonuclease III [Bordetella bronchiseptica RB50] gi|332382824|gb|AEE67671.1| ribonuclease III [Bordetella pertussis CS] Length = 256 Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+A+ +TLE R+ + F +++LLE+ALTH S ERLEFLGD +L +++ +LF Sbjct: 1 MTAMSLATLETRLDHRFGDKALLEQALTHRS---HGARHNERLEFLGDSVLNFVVAAMLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG+LS +LV + + +A+ LDL+ ++R+ K SI AD VE Sbjct: 58 ERYGKLDEGDLSRLRANLVKQASLADIAQRLDLSQYLRLGEGELKSGGFRRPSILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +L A++LD G E A + + ++ + +DAKT LQE+ + P+Y V Sbjct: 118 ALFGAVFLDAGFEAARRVIVRQYQPVMAHVDPKTLGKDAKTLLQEFLQGRKLALPQYTVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H +F V I L S+RAAEQ AA L+ Sbjct: 178 ATHGAAHSQQFEVECAIPALEIKIVAPGASRRAAEQSAAKVALE 221 >gi|15595967|ref|NP_249461.1| ribonuclease III [Pseudomonas aeruginosa PAO1] gi|107100231|ref|ZP_01364149.1| hypothetical protein PaerPA_01001254 [Pseudomonas aeruginosa PACS2] gi|116048686|ref|YP_792514.1| ribonuclease III [Pseudomonas aeruginosa UCBPP-PA14] gi|218893287|ref|YP_002442156.1| ribonuclease III [Pseudomonas aeruginosa LESB58] gi|254239132|ref|ZP_04932455.1| ribonuclease III [Pseudomonas aeruginosa C3719] gi|254245025|ref|ZP_04938347.1| ribonuclease III [Pseudomonas aeruginosa 2192] gi|296390880|ref|ZP_06880355.1| ribonuclease III [Pseudomonas aeruginosa PAb1] gi|313105592|ref|ZP_07791858.1| ribonuclease III [Pseudomonas aeruginosa 39016] gi|7531195|sp|Q9XCX9|RNC_PSEAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122257792|sp|Q02HS2|RNC_PSEAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735378|sp|B7UYX2|RNC_PSEA8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|5114183|gb|AAD40229.1|AF123492_1 RNase III [Pseudomonas aeruginosa] gi|9946659|gb|AAG04159.1|AE004512_2 ribonuclease III [Pseudomonas aeruginosa PAO1] gi|115583907|gb|ABJ09922.1| ribonuclease III [Pseudomonas aeruginosa UCBPP-PA14] gi|126171063|gb|EAZ56574.1| ribonuclease III [Pseudomonas aeruginosa C3719] gi|126198403|gb|EAZ62466.1| ribonuclease III [Pseudomonas aeruginosa 2192] gi|218773515|emb|CAW29327.1| ribonuclease III [Pseudomonas aeruginosa LESB58] gi|310878360|gb|EFQ36954.1| ribonuclease III [Pseudomonas aeruginosa 39016] Length = 229 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 79/216 (36%), Positives = 113/216 (52%), Gaps = 7/216 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS LE+++GY F +R L+ ALTH S + + ERLEFLGD IL +I LF Sbjct: 1 MSN-SLDRLERKLGYTFKDRDLMVLALTHRSYA---GRNNERLEFLGDAILNFVIGEALF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +HF A+EG+LS LV ET + +AR ++ ++R+ S K SI AD +E Sbjct: 57 HHFPQAREGQLSRLRARLVKGETLALLARGFEVGDYLRLGSGELKSGGFRRESILADAME 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD G++ A + + R L +D KT LQE+ ++ P Y+V Sbjct: 117 ALIGAIYLDTGMDSARERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRGCDLPRYEVV 176 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213 G H F V E++ L+ G S+R AEQ Sbjct: 177 DIQGEPHCRTFFVDCEVALLSDKTHGHGGSRRIAEQ 212 >gi|52424423|ref|YP_087560.1| ribonuclease III [Mannheimia succiniciproducens MBEL55E] gi|81387548|sp|Q65VN5|RNC_MANSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|52306475|gb|AAU36975.1| Rnc protein [Mannheimia succiniciproducens MBEL55E] Length = 224 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 73/218 (33%), Positives = 111/218 (50%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L+++I Y F + +LL++ALTH S + + ERLEFLGD IL I+ L++ F Sbjct: 4 LDRLQRQISYEFKDITLLKQALTHRSAA---TKHNERLEFLGDAILNYTIADALYHQFPK 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS +LV T + +AR+ L ++ + K SI AD VE++I A Sbjct: 61 CNEGELSRMRATLVREPTLAILARQFKLGEYMALGHGELKSGGFRRESILADCVEAIIGA 120 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + LD + A ++++ R +K G+ ++D KT LQE+ P Y V G Sbjct: 121 ISLDSSLVSATQITLHWYEKLLREIKPGENQKDPKTRLQEYLQGHRLALPTYDVKDIKGE 180 Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220 H FT+ + L G+ S+R AEQ AA ++L Sbjct: 181 AHCQTFTIECHVPNLDRTFIGVGSSRRKAEQAAAEQIL 218 >gi|291533418|emb|CBL06531.1| RNAse III [Megamonas hypermegale ART12/1] Length = 240 Score = 251 bits (641), Expect = 7e-65, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLL 59 + L R+G F + +LL +ALTH+S ++ ++ ERLEFLGD +L L ST L Sbjct: 8 KQKLGELVVRLGVKFNDLNLLNQALTHTSYANEAKDHSLHNERLEFLGDAVLELASSTYL 67 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F EGE++ S+V + +++A L++ ++ + R SI AD Sbjct: 68 FKTFTQMPEGEMTKARASVVCETSLAKLAMNLNVGQYLLLGKGERLTGGEHRPSILADAF 127 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ES+I A+YLD G + A +V + A+K G +D KT LQE AK G EYK+ Sbjct: 128 ESIIGAIYLDQGWQTAYEYVLDKLNEEFIAVKYGYNLKDYKTILQEVVQAK-GQHVEYKL 186 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 +GPDH F V + +G +K+ AEQ AA E LK+ IW Sbjct: 187 LAETGPDHAKTFEFAVVVDKKIDGKGKGTTKKEAEQHAAYEALKK--IW 233 >gi|187251071|ref|YP_001875553.1| ribonuclease III [Elusimicrobium minutum Pei191] gi|186971231|gb|ACC98216.1| Ribonuclease III [Elusimicrobium minutum Pei191] Length = 221 Score = 251 bits (641), Expect = 7e-65, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 118/219 (53%), Gaps = 4/219 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + +E+ + Y+F N+ L+ +ALTH S + + + ERLEFLGD +LGL+ + +++ + Sbjct: 3 NDIEQVLDYSFKNKELIREALTHKSFTGERRSVKHNERLEFLGDSVLGLVAAEYIYSKYP 62 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG LS + LVS A ELDL +++ + + SI ++ +E+++ Sbjct: 63 EVEEGVLSKIKSGLVSRHNLYLWASELDLGAYLALGAGEAATGGRTRESILSNAMEAVLG 122 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG E ++K+ ++L + D K+ LQE K+ PEY+V GP+ Sbjct: 123 AVYLDGGFESVKNIINKWISTQSL--TEVSSDYKSTLQEIVQKKYKSVPEYEVIQTVGPE 180 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H+ FTVVV +G +K+ AEQ AA L+ Sbjct: 181 HEKIFTVVVSSLKKELGRGRGKNKKLAEQDAAKNALENL 219 >gi|303248688|ref|ZP_07334942.1| ribonuclease III [Desulfovibrio fructosovorans JJ] gi|302489944|gb|EFL49870.1| ribonuclease III [Desulfovibrio fructosovorans JJ] Length = 233 Score = 251 bits (641), Expect = 7e-65, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 113/221 (51%), Gaps = 5/221 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63 + LE +G+ F LL ALTHSS ++ E ERLEFLGD +L L +S LF F Sbjct: 5 TALENALGHVFVRPELLTTALTHSSYANERGEAAKHNERLEFLGDAVLELSVSEELFARF 64 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGEL++ + LV+ + + +A L L I + S+ +DV E++I Sbjct: 65 PEAPEGELTLLRSQLVNESSLAAMALRLSLEDHILLGKGEENQGGRTRPSLLSDVFEAVI 124 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AL+LDGG VA +FV+ + + RD K+ LQE+ P Y + Sbjct: 125 GALFLDGGYGVAKSFVNATFAEVWPVRSVAPKTRDYKSRLQEYTQKVHKARPVYTLLDSE 184 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP+HD RFTV +E+ M+ S + AEQ+AA L++ Sbjct: 185 GPEHDKRFTVRLELPDGHALTAMEKSVKKAEQMAARLALEK 225 >gi|288958023|ref|YP_003448364.1| ribonuclease III [Azospirillum sp. B510] gi|288910331|dbj|BAI71820.1| ribonuclease III [Azospirillum sp. B510] Length = 261 Score = 251 bits (641), Expect = 7e-65, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 129/233 (55%), Gaps = 10/233 (4%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSI----------SHSYQESYERLEFLGDRILG 52 + + L + +G+ F+N +LL A+TH S+ +YERLEFLGDR++G Sbjct: 25 SADVAGLARALGHEFSNPTLLCDAVTHPSLMGLERTGRKGHKGPGIAYERLEFLGDRVVG 84 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L+++ L + +EG L+ R +LV E+ +VA + L +++R+S + Sbjct: 85 LVVAQWLLERYPDEREGALAKRHAALVRRESLGRVADAIGLGAYLRLSPAEAQSGGRENR 144 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 +I D E+++ A+YLDGG+E FV + K+ D+KT LQEWA + Sbjct: 145 TILGDACEAVLGAMYLDGGLEPVTRFVRQALAGEIDKATPPPLDSKTTLQEWAQGRGKPL 204 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P Y++T RSGP H+P F V V ++G+ P G SKR AE+ AA+ +L++ G+ Sbjct: 205 PRYELTERSGPAHEPLFVVAVHVAGMDPVSGSGSSKRIAEKKAASALLRQVGV 257 >gi|90580325|ref|ZP_01236132.1| ribonuclease III [Vibrio angustum S14] gi|90438627|gb|EAS63811.1| ribonuclease III [Vibrio angustum S14] Length = 224 Score = 251 bits (641), Expect = 8e-65, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 112/207 (54%), Gaps = 6/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L++++GY F N L+ ALTH S + ++ ERLEFLGD IL +I+ L++ F S Sbjct: 6 NRLQRKLGYQFNNCELMTLALTHRSANGTH---NERLEFLGDSILSFVIADDLYHRFPSV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV +T +++ RE +L + + K SI AD VE++I A+ Sbjct: 63 DEGDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFRRDSILADCVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E + V ++K R ++ G ++D KT LQE + P Y VT G Sbjct: 123 YLDSDVEQVRSIVLAWYKTRLDTIEPGINQKDPKTRLQECLQGRRLPLPAYTVTKVQGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210 H+ FTV +++GL P G S+R Sbjct: 183 HNQEFTVQCDVTGLDKPVIGKGGSRRK 209 >gi|260663569|ref|ZP_05864459.1| ribonuclease III [Lactobacillus fermentum 28-3-CHN] gi|260552110|gb|EEX25163.1| ribonuclease III [Lactobacillus fermentum 28-3-CHN] Length = 232 Score = 251 bits (641), Expect = 8e-65, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 107/229 (46%), Gaps = 7/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L K G F N +LL +A T +S + + + YER+EFLGD +L L +S Sbjct: 1 MITQLQDYLAKTYGIHFNNPALLAEAFTQASYVNEHPHENLKYYERIEFLGDAVLQLFVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ + +G+L+ ++V ++ S+ A+E +IR+ S+ Sbjct: 61 EYIYRRYPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRASLLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ ES I ALYLD G + F+ + L G F DAKT LQE+ V E Sbjct: 121 DIFESFIGALYLDQGRQAVEQFIQTVIFPK-LDLGWFDHAVDAKTSLQEFLQRNGDVAIE 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y + G ++DP F V V + G A G SK+ AE AA L++ Sbjct: 180 YDLLSEGGTENDPVFEVEVTVDGKKVATGQGSSKKHAEMDAAKHALEKL 228 >gi|168188027|ref|ZP_02622662.1| ribonuclease III [Clostridium botulinum C str. Eklund] gi|169294133|gb|EDS76266.1| ribonuclease III [Clostridium botulinum C str. Eklund] Length = 237 Score = 251 bits (641), Expect = 8e-65, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 4/223 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLF 60 + + +E ++ F + ++L+ ALTHSS + + S ERLEFLGD IL L IS LL+ Sbjct: 6 KIILNEVENKLKVKFNDINILDTALTHSSFINENKNINSNERLEFLGDSILQLCISELLY 65 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG L+ + +V + +VA++ ++ +I +S TSI +D VE Sbjct: 66 NKYKDEPEGFLTKKRALIVCGNSLHEVAKKWNIGKYINMSKGEEMTGGRTRTSILSDCVE 125 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IA++YLD G EVA F+ + + + K+ + D KT+LQE EY + Sbjct: 126 AIIASIYLDQGYEVAKNFILENFDEIIQKAHSNEIILDYKTKLQEIIQKFGEYNIEYTLI 185 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H +F V + L G SK+ +EQ AA E LK Sbjct: 186 SFEGPPHRRKFVTEVSVDSLVKGIGEGYSKKESEQNAAREALK 228 >gi|184155714|ref|YP_001844054.1| ribonuclease III [Lactobacillus fermentum IFO 3956] gi|227515694|ref|ZP_03945743.1| ribonuclease III [Lactobacillus fermentum ATCC 14931] gi|238692982|sp|B2GD42|RNC_LACF3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|183227058|dbj|BAG27574.1| ribonuclease III [Lactobacillus fermentum IFO 3956] gi|227085942|gb|EEI21254.1| ribonuclease III [Lactobacillus fermentum ATCC 14931] gi|299783404|gb|ADJ41402.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus fermentum CECT 5716] Length = 232 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 107/229 (46%), Gaps = 7/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L K G F N +LL +A T +S + + + YER+EFLGD +L L +S Sbjct: 1 MITQLQDYLAKTYGIHFNNPALLAEAFTQASYVNEHPHENLKYYERIEFLGDAVLQLFVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ + +G+L+ ++V ++ S+ A+E +IR+ S+ Sbjct: 61 EYIYRRYPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRASLLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ ES I ALYLD G + F+ + L G F DAKT LQE+ V E Sbjct: 121 DIFESFIGALYLDQGRQAVEQFIQTVIFPK-LDLGWFDHAVDAKTSLQEFLQRNGDVAIE 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y + G ++DP F V V + G A G SK+ AE AA L++ Sbjct: 180 YDLLSEGGTENDPVFEVEVTVDGKKVATGQGSSKKHAEMEAAKHALEKL 228 >gi|152986476|ref|YP_001350091.1| ribonuclease III [Pseudomonas aeruginosa PA7] gi|189043330|sp|A6VAK6|RNC_PSEA7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|150961634|gb|ABR83659.1| ribonuclease III [Pseudomonas aeruginosa PA7] Length = 229 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 76/211 (36%), Positives = 111/211 (52%), Gaps = 6/211 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL +I LF+HF Sbjct: 5 LDRLERKLGYTFKDQDLMVLALTHRSYA---GRNNERLEFLGDAILNFVIGEALFHHFPQ 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EG+LS LV ET + +AR ++ ++R+ S K SI AD +E+LI A Sbjct: 62 AREGQLSRLRARLVKGETLALLARGFEVGDYLRLGSGELKSGGFRRESILADAMEALIGA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD G++ A + + R L +D KT LQE+ ++ P Y+V G Sbjct: 122 IYLDTGMDSARERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRGCDLPRYEVVDIQGE 181 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213 H F V E++ L+ G S+R AEQ Sbjct: 182 PHCRTFFVDCEVALLSDKTHGHGGSRRIAEQ 212 >gi|284048724|ref|YP_003399063.1| ribonuclease III [Acidaminococcus fermentans DSM 20731] gi|283952945|gb|ADB47748.1| ribonuclease III [Acidaminococcus fermentans DSM 20731] Length = 234 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 107/233 (45%), Gaps = 10/233 (4%) Query: 1 MSALRYSTLE---KRIGYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILG 52 M R LE +++G + LL+ ALTH+S ++ +++ +RLEFLGD +L Sbjct: 1 MEEQRQKELEGLCRQLGMEMKDLHLLDMALTHTSYAYESKKNPRPQHNQRLEFLGDSVLS 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L++ST ++ EGELS LV ET +Q+A E L + + Sbjct: 61 LVVSTHIYKTCPQMDEGELSKLRAFLVCEETLAQLATENHLGDHLLLGKGEINLDGEENP 120 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFG 170 SI AD ES++ A YLD G +++ R L + RD KT LQE Sbjct: 121 SILADAFESVLGAYYLDQGFARVTGLLNRLLISRIPELTADGIDRDYKTRLQEVVQKDGP 180 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y GP H+ F + V ++G +G +K+ AEQ AA E LK Sbjct: 181 AEILYDQVSAEGPSHNRTFVMRVLVNGNELGKGRGRTKKEAEQRAAREALKAL 233 >gi|227513461|ref|ZP_03943510.1| ribonuclease III [Lactobacillus buchneri ATCC 11577] gi|227524604|ref|ZP_03954653.1| ribonuclease III [Lactobacillus hilgardii ATCC 8290] gi|227083334|gb|EEI18646.1| ribonuclease III [Lactobacillus buchneri ATCC 11577] gi|227088279|gb|EEI23591.1| ribonuclease III [Lactobacillus hilgardii ATCC 8290] Length = 236 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 75/219 (34%), Positives = 113/219 (51%), Gaps = 7/219 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64 L++ ++ LL++A T +S + +++ YERLEFLGD +L L++S +F + Sbjct: 9 LKQDFNIHIDDQDLLDEAFTQASYVNEHRDQHLKFYERLEFLGDAVLQLIVSEYIFKRYP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G L+ ++V+ ++ S ARE +IR+ K S+ D+ ES + Sbjct: 69 KLPQGRLTRLRAAMVNEQSFSTFARECHFNKYIRLGKGEEKAGARDRDSLLCDIFESFVG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G +V FV + + L G F + D KTELQE A A V +Y++ G Sbjct: 129 ALYLDQGKKVVEGFVQQVIFPK-LDEGMFAKFFDHKTELQELAQADGPVDIDYELVDEYG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 PD+D F V V I G+ SK+ AEQ AA E LK Sbjct: 188 PDNDRLFKVNVAIDDKLLGVGIGHSKKDAEQRAAQEALK 226 >gi|227510452|ref|ZP_03940501.1| ribonuclease III [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190104|gb|EEI70171.1| ribonuclease III [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 236 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 75/219 (34%), Positives = 112/219 (51%), Gaps = 7/219 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64 L++ ++ LL++A T +S + +++ YERLEFLGD +L L++S +F + Sbjct: 9 LKQDFNIHIDDQDLLDEAFTQASYVNEHRDQHLKFYERLEFLGDAVLQLIVSEYIFKRYP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G L+ ++V+ ++ S ARE +IR+ K S+ D+ ES + Sbjct: 69 KLPQGRLTRLRAAMVNEQSFSTFARECHFNKYIRLGKGEEKAGARDRDSLLCDIFESFVG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G V FV + + L G F + D KTELQE A A V +Y++ G Sbjct: 129 ALYLDQGKTVVEGFVQQVIFPK-LDEGMFAKFFDHKTELQELAQADGPVDIDYELVDEYG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 PD+D F V V I G+ SK+ AEQ AA E LK Sbjct: 188 PDNDRLFKVNVAIDDKLLGVGIGHSKKDAEQRAAQEALK 226 >gi|322514172|ref|ZP_08067237.1| ribonuclease III [Actinobacillus ureae ATCC 25976] gi|322119958|gb|EFX91960.1| ribonuclease III [Actinobacillus ureae ATCC 25976] Length = 222 Score = 250 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 6/224 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L+K++ Y F + L +ALTH S ++ ERLEFLGD IL I LF F Sbjct: 1 MHIERLQKKLDYKFISLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ DL ++++ + K SI +D VE++I Sbjct: 58 PKANEGELSRMRATLVREQTLAILARQFDLGEYMKLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G++ A V +++ +K ++D KT LQE+ + P Y+V Sbjct: 118 AAIYLDSGMDNAIERVSVWYQDLLAEMKPSDAQKDPKTRLQEFLQGRKLKLPAYEVIDIK 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 178 GEAHNQTFKVTCKIETFDETFIGVGTSRRKAEQNAAEQVLVKLN 221 >gi|317058970|ref|ZP_07923455.1| ribonuclease III [Fusobacterium sp. 3_1_5R] gi|313684646|gb|EFS21481.1| ribonuclease III [Fusobacterium sp. 3_1_5R] Length = 235 Score = 250 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 9/233 (3%) Query: 1 MSAL--RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLL 54 MS++ LE RI Y F +++LL+ AL H S + ++ + E+LE LGD +LGL+ Sbjct: 1 MSSVSKNLVDLEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLV 60 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ++ L+ + KEG L+ + VS + ++R+L + ++ +S SI Sbjct: 61 VAEYLYQKYPEEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSI 120 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVT 172 DV E+++ A+YLD G A +V + K F D KT LQE+ K+ Sbjct: 121 LGDVFEAILGAIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDI 180 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P+Y + GPDH F + V+I A+ +K+ AEQ+AA ++ K G+ Sbjct: 181 PKYTLVGEEGPDHRKLFEMQVQIQNN-IAKAKGTNKKIAEQMAAKQLCKELGV 232 >gi|225551799|ref|ZP_03772742.1| ribonuclease III [Borrelia sp. SV1] gi|225371594|gb|EEH01021.1| ribonuclease III [Borrelia sp. SV1] Length = 245 Score = 250 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59 + S + + F+N LL+ AL HSS S+ + ERLEFLGD +L L+I+ L Sbjct: 15 KAQLSKFLENLSIDFSNFDLLDTALCHSSYSNELDQKSSNNERLEFLGDSVLNLIITDHL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EGELS + +VS ++ S +ARE++L S+I + + I AD + Sbjct: 75 YKTYPNKSEGELSKARSYIVSEDSLSNIAREINLGSYILLGRGEESNDGRNKKGILADAI 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + A+YLD G A FV + R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 135 EAFVGAIYLDSGFLRATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V + + + G SK+ AE AA LK Sbjct: 195 DKEIGPDHDKVFCVELYVGENFISNGKGKSKKEAEMRAAEVALKAM 240 >gi|73748788|ref|YP_308027.1| ribonuclease III [Dehalococcoides sp. CBDB1] gi|90101624|sp|Q3ZXY9|RNC_DEHSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|73660504|emb|CAI83111.1| ribonuclease III [Dehalococcoides sp. CBDB1] Length = 237 Score = 250 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 L + LE +G F SLLE+AL H+S + S ER+EFLGD +LG++ + L Sbjct: 2 LDLTELENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGDAVLGVIFADRL 61 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F +EG+L+ + LV E+ +VA ++L ++ + F + A Sbjct: 62 YHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDVSKGRFKPANLAGAF 121 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E+++AA+Y+D G++V + + +K + D K+ LQE A+ +TP Y++ Sbjct: 122 EAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQELIQAQLQLTPRYRI 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 T SGP+H+ F V A+G SK+ AE AA L++ Sbjct: 182 TNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAAKVALQQ 226 >gi|167037696|ref|YP_001665274.1| ribonuclease III [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|307264836|ref|ZP_07546398.1| ribonuclease III [Thermoanaerobacter wiegelii Rt8.B1] gi|320116111|ref|YP_004186270.1| ribonuclease III [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326389510|ref|ZP_08211077.1| ribonuclease III [Thermoanaerobacter ethanolicus JW 200] gi|166856530|gb|ABY94938.1| Ribonuclease III [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|306920094|gb|EFN50306.1| ribonuclease III [Thermoanaerobacter wiegelii Rt8.B1] gi|319929202|gb|ADV79887.1| ribonuclease III [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325994515|gb|EGD52940.1| ribonuclease III [Thermoanaerobacter ethanolicus JW 200] Length = 246 Score = 250 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 76/213 (35%), Positives = 115/213 (53%), Gaps = 5/213 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTL 58 S LEKRI Y+F +++LL +ALTHSS +H + S ERLEFLGD +L L+IS Sbjct: 16 KRENLSELEKRINYSFKDKNLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEY 75 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + +EG LS +V + ++ ARE++L +F+R+ SI AD Sbjct: 76 LYKNRKDLEEGSLSKYRAEIVCEPSLARCAREIELGNFLRIGKGEELTGGRERDSILADA 135 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 +E+++AA+YLDGG+EV + + +K + G RD KT+LQE + Y+ Sbjct: 136 MEAILAAVYLDGGLEVVRNVILELFKNIIEEVLEGLIYRDYKTKLQEVVQSMEIGKIIYE 195 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + GPDH+ F V I + +G SK+ Sbjct: 196 LIEEMGPDHNKTFVTQVRIGDVILGKGYGKSKK 228 >gi|300087535|ref|YP_003758057.1| ribonuclease III [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527268|gb|ADJ25736.1| ribonuclease III [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 234 Score = 250 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 113/223 (50%), Gaps = 6/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 Y ++ R+G FAN ++LE AL HSS + + ERLEFLGD +LG+ I+ LF Sbjct: 3 DYEEIQARLGVRFANPAILETALIHSSFVNETADQSISHNERLEFLGDAVLGMWIAERLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG L+ + LV ET + +A EL L + + + + + +E Sbjct: 63 RDFPDEPEGTLTRYRSLLVRRETLAFIADELQLGEALYLGRGEIRSGGRRKPANLSRALE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD G + G +D+ +++ L D+K+ LQE ++ PEY++ Sbjct: 123 AVIAAVYLDRGYDTTGQVIDRLFERHFADLPGMAAAADSKSHLQEIVQGRYHTPPEYRII 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +GPD+ FT V ++G G K+ AE AA E L+ Sbjct: 183 EENGPDNAQSFTAEVIVNGQVRGTGRGSRKKDAETAAAQEALE 225 >gi|89070097|ref|ZP_01157427.1| Ribonuclease III [Oceanicola granulosus HTCC2516] gi|89044318|gb|EAR50461.1| Ribonuclease III [Oceanicola granulosus HTCC2516] Length = 226 Score = 250 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 87/221 (39%), Positives = 127/221 (57%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + R+G+ F N LL +ALTH S S + + +RLEFLGDR+LGL+++ LF Sbjct: 4 SADLTAFCDRLGHRFENPELLLRALTHPSFSSTGRGDNQRLEFLGDRVLGLVMAEALFEA 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A+EG L+ R+N+LV ETC++VARE+D+ + +++ K ++ AD +E++ Sbjct: 64 DPEAREGLLAPRYNALVRKETCAEVAREIDIGAVLKLGRSEMKTGGRRKEALLADAMEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+Y D G A V +W +R + RDAKT LQE A A+ P Y+ R G Sbjct: 124 IAAIYRDAGFARAREVVRAHWGKRIGAVAEDARDAKTALQELAQARGEPPPGYREISRHG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH P FT+ V ++ A+ SKR AEQ AA +L R Sbjct: 184 PDHQPLFTIEVRLATGESARAEAGSKRQAEQAAARTLLDRL 224 >gi|237737605|ref|ZP_04568086.1| ribonuclease III [Fusobacterium mortiferum ATCC 9817] gi|229419485|gb|EEO34532.1| ribonuclease III [Fusobacterium mortiferum ATCC 9817] Length = 240 Score = 250 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 120/231 (51%), Gaps = 10/231 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 Y EK +GY+F N+ LL+ +L H S + ++ S ERLE LGD +L L+++ L+ Sbjct: 4 NYLDFEKNLGYSFKNKELLKNSLIHRSFGNEHRRYKKISNERLELLGDAVLDLVVTEYLY 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ EG+L+ + +VS + ++++L++ ++ +S +SI D E Sbjct: 64 KSYANSTEGDLAKVKSMVVSEPVLAGISKKLEVGKYLLLSRGEELTGGRERSSILGDAFE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+Y+D E A FV + K + S + D KT LQE++ + V PEY V Sbjct: 124 AILGAIYMDSNFETAKEFVLTHIKDSIDHVDSNEEILDFKTILQEYSQKNYRVIPEYSVI 183 Query: 179 FRSGPDHDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDH F + V+I +G +K+ AEQ AA + K+ G+ Sbjct: 184 NEIGPDHQKIFEIEVKIDNGIDEEKSDRGTGKNKKTAEQAAAKSLCKKLGV 234 >gi|117928781|ref|YP_873332.1| ribonuclease III [Acidothermus cellulolyticus 11B] gi|117649244|gb|ABK53346.1| RNAse III [Acidothermus cellulolyticus 11B] Length = 246 Score = 250 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 74/218 (33%), Positives = 113/218 (51%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 L++ G + +LLE+A+TH S ++ + ERLEFLGD +LGL+I+ L+ F Sbjct: 16 LEELQQIAGLPLS-LALLERAVTHRSYAYENGGLPTNERLEFLGDAVLGLVITDTLYRRF 74 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++V+ ++VAR L L F+R+ +SI AD +E+LI Sbjct: 75 PELPEGQLAKFRSAVVNMRALAEVARSLRLGEFLRLGRGEESTGGRNKSSILADALEALI 134 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+Y++ G++ A FV + + ++ D KT LQE A+ P Y + Sbjct: 135 GAVYVEHGLDGAAEFVHRLFDPLIDRAAALGAGLDWKTSLQELTAAQHLGVPFYDL-SER 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ FT V I G G SK+ AEQ AA E Sbjct: 194 GPDHEKVFTAEVRIGGRVYGTGSGHSKKEAEQRAAQEA 231 >gi|325971140|ref|YP_004247331.1| ribonuclease 3 [Spirochaeta sp. Buddy] gi|324026378|gb|ADY13137.1| Ribonuclease 3 [Spirochaeta sp. Buddy] Length = 248 Score = 250 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 68/214 (31%), Positives = 114/214 (53%), Gaps = 5/214 (2%) Query: 15 YAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 +N LL A TH S ++ + + ERLEFLGD +LG+ ++ LF +F + EG+ Sbjct: 29 ITISNLELLNLAFTHRSFANETSDSVDNNERLEFLGDSVLGMCVADWLFRNFPAKAEGDF 88 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 S + +VS ++ + +AR+L + ++ + ++ AD +E+L AA YLD G Sbjct: 89 SKIKSVVVSEDSLAMIARQLSVDKYLLLGKGEEFTGGRDKKALLADCMEALFAACYLDSG 148 Query: 132 IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 E A +FV Y +Q +A+ + RD KT LQE+ ++ P Y + ++GP+HD F Sbjct: 149 FEAAKSFVMLYLEQQIQAVLDDDYHRDYKTSLQEYMQKRWRKVPSYTLVRKTGPEHDFTF 208 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V V+++G +K+ AEQ+AA + Sbjct: 209 FVEVDVNGQVFGPASGANKKQAEQMAAKLAYDQL 242 >gi|251781986|ref|YP_002996288.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390615|dbj|BAH81074.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 230 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 9/226 (3%) Query: 7 STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 LE+ + F + +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 2 KKLEELLAASFDICFEDHTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEY 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + EG++S + +V E+ + +R ++I++ K +I D+ Sbjct: 62 LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDL 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + AL LD G++ F+ + + K + +D KT LQE +K + +Y+V Sbjct: 122 FEAFLGALLLDKGVDEVRRFLQQVMIPQVEKGNFEKVKDYKTCLQELLQSKGDIAIDYQV 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +F V V ++ ++G+ SK+ AEQ AA L + Sbjct: 182 ISEKGPAHAKQFEVAVFVNEEVLSKGLGKSKKMAEQDAAKNALVQL 227 >gi|153005020|ref|YP_001379345.1| ribonuclease III [Anaeromyxobacter sp. Fw109-5] gi|152028593|gb|ABS26361.1| Ribonuclease III [Anaeromyxobacter sp. Fw109-5] Length = 377 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 7/219 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLLF 60 +TLE R+G +RS ALTH S + +++ ERLEFLGD ++ L +S L Sbjct: 17 VATLEARLGLCLGDRSTALAALTHKSYVNEHRDEPGLGDNERLEFLGDAVIDLAVSHRLM 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F +A+EG+LS ++V + S++AR LDL S +R+ S+ AD +E Sbjct: 77 ERFPAAREGDLSKMRAAVVDEQGLSEMARALDLGSLLRLGRGEELTGGRRKASLLADAME 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++AALYLD G+ +D++ + +G RD KT+LQE A ++ TP Y+V Sbjct: 137 AVVAALYLDAGLAPVLVLIDRFLGDAFARAAAGTLDRDFKTQLQELAQSRVRATPRYRVV 196 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 GPDH F V E+ G +G SK+ AEQ AA Sbjct: 197 GEHGPDHSKTFEVETELRGEVVGRGTGRSKKDAEQAAAK 235 >gi|212710663|ref|ZP_03318791.1| hypothetical protein PROVALCAL_01729 [Providencia alcalifaciens DSM 30120] gi|212686744|gb|EEB46272.1| hypothetical protein PROVALCAL_01729 [Providencia alcalifaciens DSM 30120] Length = 226 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 109/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L++++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPSLLEKLQRKLGYTFKQNDLLIQALTHRSASSKH---NERLEFLGDSILSFVIANDLY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIEKIILAWYKARLDEISPGDKQKDPKTRLQEYLQGRHLPLPNYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRA 210 G HD FT+ ++SG P G+ S+R Sbjct: 178 LVKGEAHDQEFTIHCQVSGIEEPIHGIGSSRRK 210 >gi|71892313|ref|YP_278047.1| RNase III [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|90101614|sp|Q492D1|RNC_BLOPB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71796419|gb|AAZ41170.1| RNase III [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 229 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 118/226 (52%), Gaps = 9/226 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + + L++++GY F LL +ALTH S S+ + ERLEFLGD IL +I+ LL++ F Sbjct: 1 MLVNALQEKLGYIFNRYDLLLQALTHRSSSNQH---NERLEFLGDAILNYVIANLLYHRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG +S +LV T + +ARE +L ++++ K SI A+ +E+LI Sbjct: 58 PHISEGGMSRMRANLVRENTLATLAREFNLGDYLQLGQGELKSGGYQRESILANTIEALI 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF-----RRDAKTELQEWAHAKFGVTPEYKVT 178 ++LD I+ + ++K R + ++D KT LQE+ + P Y + Sbjct: 118 GGIFLDSNIQTIEILIINWYKIRIDHMDPYASYDTQKDPKTRLQEYMQRRRLPLPVYWIN 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FT+ ++S L P G S+R AEQ AAA+VL+ Sbjct: 178 QIIGEAHNQIFTINCQVSELTQPIIGCGSSRRRAEQNAAAKVLEAL 223 >gi|255320780|ref|ZP_05361955.1| ribonuclease III [Acinetobacter radioresistens SK82] gi|262379444|ref|ZP_06072600.1| ribonuclease III [Acinetobacter radioresistens SH164] gi|255302157|gb|EET81399.1| ribonuclease III [Acinetobacter radioresistens SK82] gi|262298901|gb|EEY86814.1| ribonuclease III [Acinetobacter radioresistens SH164] Length = 230 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 78/217 (35%), Positives = 117/217 (53%), Gaps = 5/217 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L RIGY F LL+ ALTH S+SH Y +YERLEFLGD +LG++I+ L++ + Sbjct: 12 RLPSRIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPFEN 69 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ +LV E ++A +L L+ + +S+ K SI AD VE++I A+Y Sbjct: 70 EGRLTRMRATLVRQEALGKIANDLKLSQCLILSTGELKSGGHHRESILADTVEAIIGAIY 129 Query: 128 LDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +D G +++ V K++ ++ +D K+ LQE+ A+ P Y+V G Sbjct: 130 IDCGELKILQDIVLKWYGPYLNNIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDA 189 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + F V + L G S+R AEQ AAAE+LK Sbjct: 190 PNQHFKVECSVDSLPKFIGEGSSRRFAEQAAAAEILK 226 >gi|229918600|ref|YP_002887246.1| ribonuclease III [Exiguobacterium sp. AT1b] gi|229470029|gb|ACQ71801.1| ribonuclease III [Exiguobacterium sp. AT1b] Length = 259 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 105/219 (47%), Gaps = 4/219 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62 + +LE+R+ F+N LL +A THSS + + + ERLEFLGD +L L +S L+ Sbjct: 31 FKSLEERLDVQFSNHDLLMQAFTHSSYVNEQRGLRKDNERLEFLGDAVLELTVSRFLYET 90 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EGEL+ ++V + A + FI + ++ ADV ES Sbjct: 91 YPERSEGELTKLRAAIVCEPSLVNFAEAFAFSDFILLGKGEELTGGRKRPALLADVFESY 150 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 I ALYLD GIE F+ + + L + + D K++LQE + Y++ Sbjct: 151 IGALYLDQGIEAVERFLAEAVFPKVLAGVFEEQTDFKSQLQESVQREGLGPVSYEIIEER 210 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP H F +S +G+ SK+ AEQ+AA E L Sbjct: 211 GPAHSREFVAHARLSDDIVGEGVGRSKKEAEQLAAKEAL 249 >gi|254785337|ref|YP_003072766.1| ribonuclease III [Teredinibacter turnerae T7901] gi|237684548|gb|ACR11812.1| ribonuclease III [Teredinibacter turnerae T7901] Length = 229 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 123/228 (53%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +S + + L K + Y F++ SLLEKAL+H S+ + + ERLEFLGD +L LI+ L+ Sbjct: 4 LSKTKLNQLSKALNYTFSDISLLEKALSHRSVGSN---NNERLEFLGDSLLNFLIAENLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A+EG+LS SLV ET +++A++ DL F+ + K SI AD VE Sbjct: 61 QRFPKAREGDLSRLRASLVKGETLAELAKDFDLGEFLYLGEGELKSGGFRRASILADAVE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YL+ G++ V ++ +R A+ +D KT LQE+ P Y V Sbjct: 121 ALIGAIYLESGMDRCRDTVLHWFGERLDAIDLNSSVKDPKTRLQEYLQELRQPLPVYTVE 180 Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + G H P F V +I SKR AE++AAA +LK+ G+ Sbjct: 181 SQLGQAHSPEFQVSCDIGRSQGKTVATSSSKRNAEKLAAAAMLKQLGV 228 >gi|293609826|ref|ZP_06692128.1| ribonuclease 3 [Acinetobacter sp. SH024] gi|292828278|gb|EFF86641.1| ribonuclease 3 [Acinetobacter sp. SH024] Length = 230 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 80/217 (36%), Positives = 117/217 (53%), Gaps = 5/217 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L RIGY F LL+ ALTH S+SH Y +YERLEFLGD +LG++I+ L++ + + Sbjct: 12 RLLSRIGYQFKQLELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPNEN 69 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ +LV E ++A +L L+ + +S+ K SI AD VE++I A+Y Sbjct: 70 EGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIY 129 Query: 128 LDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LD G + + V K++ ++ +D K+ LQE+ A+ P Y+V G Sbjct: 130 LDSGDLNLLKDIVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDA 189 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V + GL G S+R AEQ AAAE+LK Sbjct: 190 PHQHFKVECVVDGLPKIYGEGSSRRFAEQAAAAEILK 226 >gi|329850746|ref|ZP_08265591.1| ribonuclease III [Asticcacaulis biprosthecum C19] gi|328841061|gb|EGF90632.1| ribonuclease III [Asticcacaulis biprosthecum C19] Length = 236 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 92/223 (41%), Positives = 134/223 (60%), Gaps = 3/223 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFN 61 + T++ R+GY F ++ LLE ALTH+S++ + ERLEFLGDR+LGL+I+ L + Sbjct: 11 IAIETVQDRLGYRFRDKQLLEVALTHASVAEGARRIADNERLEFLGDRVLGLMIAEALMD 70 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +F A+EGELS RF++LVS E C+ +AR+L L +R+++ K +I D E+ Sbjct: 71 NFPEAEEGELSRRFHALVSREACADIARQLSLGEAVRLAAGETKSGGRSNPTILGDACEA 130 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFR 180 L+AA+Y+DGG + W+Q L SG R + K+ LQEWA A P Y + R Sbjct: 131 LMAAVYVDGGYDAVVKSFAPLWQQLLLDSGNASRSNPKSFLQEWAVANAKRPPAYNLIER 190 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH P FT+ V I GL P S++ AE+ AA +++RE Sbjct: 191 RGPDHAPVFTMEVVIDGLQPQSATGKSRQEAEKTAALALIERE 233 >gi|158423628|ref|YP_001524920.1| ribonuclease III [Azorhizobium caulinodans ORS 571] gi|226735365|sp|A8I3B5|RNC_AZOC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|158330517|dbj|BAF88002.1| ribonuclease III [Azorhizobium caulinodans ORS 571] Length = 235 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 96/226 (42%), Positives = 138/226 (61%), Gaps = 3/226 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61 ++ LE R+G++FA+RS L ALTH S SY+RLEFLGD +LG ++S +L+ Sbjct: 6 DFAALEARLGHSFADRSHLVLALTHISSVKGQAVRVRSYQRLEFLGDHVLGSVVSHMLYA 65 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EGELS R LV E C++VA+++ L ++R+ + +I ADV E+ Sbjct: 66 AFPKAEEGELSRRLAELVREEACAEVAQDMGLGPYLRLGPGEAQSGARQRRAILADVAEA 125 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 ++AA+YLDGG E A V+++W+ R + RD KT LQEWA A+ P Y+ RS Sbjct: 126 VVAAVYLDGGYEAASALVERFWRGRLEAPRRPLRDPKTVLQEWAQARGLPPPVYRDVERS 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 GPDH PRF V V++ GL A+ SK+ A++ AA+ L REG+ T Sbjct: 186 GPDHAPRFRVAVDLPGLECAEAEGGSKQTAQKAAASAFLAREGVVT 231 >gi|167040357|ref|YP_001663342.1| ribonuclease III [Thermoanaerobacter sp. X514] gi|256750709|ref|ZP_05491594.1| ribonuclease III [Thermoanaerobacter ethanolicus CCSD1] gi|300914441|ref|ZP_07131757.1| ribonuclease III [Thermoanaerobacter sp. X561] gi|307724323|ref|YP_003904074.1| ribonuclease III [Thermoanaerobacter sp. X513] gi|166854597|gb|ABY93006.1| Ribonuclease III [Thermoanaerobacter sp. X514] gi|256750292|gb|EEU63311.1| ribonuclease III [Thermoanaerobacter ethanolicus CCSD1] gi|300889376|gb|EFK84522.1| ribonuclease III [Thermoanaerobacter sp. X561] gi|307581384|gb|ADN54783.1| ribonuclease III [Thermoanaerobacter sp. X513] Length = 246 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 75/213 (35%), Positives = 115/213 (53%), Gaps = 5/213 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTL 58 S LE+RI Y+F +++LL +ALTHSS +H + S ERLEFLGD +L L+IS Sbjct: 16 KRENLSELEERINYSFKDKNLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEY 75 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + +EG LS +V + ++ ARE++L +F+R+ SI AD Sbjct: 76 LYKNRKDLEEGSLSKYRAEIVCEPSLARCAREIELGNFLRIGKGEELTGGRERDSILADA 135 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 +E+++AA+YLDGG+EV + + +K + G RD KT+LQE + Y+ Sbjct: 136 MEAILAAVYLDGGLEVVRNVILELFKNIIEEVLEGLIYRDYKTKLQEVVQSMEIGKIIYE 195 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + GPDH+ F V I + +G SK+ Sbjct: 196 LIEEMGPDHNKTFVTQVRIGDVILGKGYGKSKK 228 >gi|322411350|gb|EFY02258.1| ribonuclease III [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 230 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 9/226 (3%) Query: 7 STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 LE+ + F +++LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 2 KKLEELLAASFDICFEDQTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEY 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + EG++S + +V E+ + +R ++I++ K +I D+ Sbjct: 62 LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDL 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + AL LD G++ F+ + K + +D KT LQE +K + +Y+V Sbjct: 122 FEAFLGALLLDKGVDEVRRFLKLVMIPQVEKGNFEKVKDYKTCLQELLQSKGDIAIDYQV 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +F V V ++ ++G+ SK+ AEQ AA L + Sbjct: 182 ISEKGPAHAKQFEVAVFVNEEVLSKGLGKSKKMAEQDAAKNALVQL 227 >gi|288941442|ref|YP_003443682.1| ribonuclease III [Allochromatium vinosum DSM 180] gi|288896814|gb|ADC62650.1| ribonuclease III [Allochromatium vinosum DSM 180] Length = 225 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 117/225 (52%), Gaps = 7/225 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+A L + +G+ F LL +ALTH S+ S + ERLEFLGD ++G +I+ L+ Sbjct: 1 MNA-DPRRLAQALGHRFTREELLIQALTHRSVGSS---NNERLEFLGDALIGFVIAEALW 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EG LS SLV E+ +++AR+L L +R+ + + SI AD +E Sbjct: 57 ERFPKADEGTLSRMRASLVKRESLARLARDLKLGDSLRLGAGELRTGGHARDSILADALE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+YLD G E T V + + R + + +D KT LQEW + PEY V Sbjct: 117 AVLGAVYLDAGFERTRTVVLELFAARLEQTDAERAGKDPKTRLQEWLQSYKRPLPEYLVL 176 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKR 222 G HD F V ++ +G S+R AEQ AA +L+R Sbjct: 177 SIDGDQHDQTFIVSCQLQDADVTTRGTGTSRRRAEQAAAESMLER 221 >gi|315917454|ref|ZP_07913694.1| ribonuclease III [Fusobacterium gonidiaformans ATCC 25563] gi|313691329|gb|EFS28164.1| ribonuclease III [Fusobacterium gonidiaformans ATCC 25563] Length = 235 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 9/233 (3%) Query: 1 MSAL--RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLL 54 MS++ LE RI Y F +++LL+ AL H S + ++ + E+LE LGD +LGL+ Sbjct: 1 MSSVSKNLVDLEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLV 60 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ++ L+ + KEG L+ + VS + ++R+L + ++ +S SI Sbjct: 61 VAEYLYQKYPEEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSI 120 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVT 172 DV E+++ A+YLD G A +V + K F D KT LQE+ K+ Sbjct: 121 LGDVFEAILGAIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDI 180 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P+Y + GPDH F + V+I A+ +K+ AEQ+AA ++ K G+ Sbjct: 181 PKYTLVGEEGPDHRKLFEMQVQIQNN-IAKAKGTNKKVAEQMAAKQLCKELGV 232 >gi|217970713|ref|YP_002355947.1| ribonuclease III [Thauera sp. MZ1T] gi|217508040|gb|ACK55051.1| ribonuclease III [Thauera sp. MZ1T] Length = 222 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 83/216 (38%), Positives = 113/216 (52%), Gaps = 6/216 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ R+G+AF++ LL++ALTH S Q + ER EFLGD +L ++S LF F + Sbjct: 4 RLQARLGHAFSDVRLLQEALTHRSFG---QPNNERFEFLGDAVLDCVVSIALFGRFGELR 60 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EGELS SLV +T ++A EL+L +R+ K S SI AD +E+L AA+Y Sbjct: 61 EGELSRVRASLVRQDTLHRLALELELGDCLRLGEGELKSGGSRRPSILADALEALFAAVY 120 Query: 128 LDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD G E A +D+ + + K +D KT LQEW A+ P Y + G H Sbjct: 121 LDAGFEAAKGVIDRLYAPLIAEVDPCKPSKDPKTALQEWLQARRIPVPSYTMVEIVGEAH 180 Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220 F V EI LA G S+R AEQ +A L Sbjct: 181 AQEFEVACEIPKLAVRTLGRGPSRRIAEQQSAELAL 216 >gi|260890105|ref|ZP_05901368.1| hypothetical protein GCWU000323_01267 [Leptotrichia hofstadii F0254] gi|260860128|gb|EEX74628.1| ribonuclease III [Leptotrichia hofstadii F0254] Length = 243 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 111/223 (49%), Gaps = 6/223 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 L ++IGY F N LE+ALTH S S+ ++ + E+LEFLGD +L L+ + ++ Sbjct: 10 KELMQKIGYEFKNEEYLEEALTHRSYSNETEKDRRFNNEKLEFLGDAVLNLITTEYIYEL 69 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 ++ EGEL+ + ++S S +A +++L ++ +S+ SI D E+L Sbjct: 70 YEKKTEGELAKLKSQIISEPVFSTIASDIELGEYLYLSNGEIMSGGRNRRSILGDAFEAL 129 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++ D A K + K + D KT LQE+ K+ PEYK+ Sbjct: 130 IGAIFKDSDYYTAKNVALKLLLGKINKLEEIEGTGDYKTVLQEFVQGKYRKMPEYKLLNT 189 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F + V + G+ SK+ AE+ AA E L + Sbjct: 190 KGPDHDKVFEISVSWNDKIYGVGIGKSKKEAEKHAAKEALVKL 232 >gi|110834492|ref|YP_693351.1| ribonuclease III [Alcanivorax borkumensis SK2] gi|123345468|sp|Q0VP19|RNC_ALCBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|110647603|emb|CAL17079.1| ribonuclease III [Alcanivorax borkumensis SK2] Length = 228 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 85/220 (38%), Positives = 112/220 (50%), Gaps = 5/220 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L R+GY F + SLLE ALTH S+S +YERLEFLGD LG +IS LF F Sbjct: 4 DLNRLMARLGYQFQDLSLLELALTHRSVSRH--RNYERLEFLGDAQLGQIISVALFEQFP 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EG+L+ SLV +T + VAREL L ++ + K SI AD +ES+I Sbjct: 62 EAAEGQLTRMRASLVRGQTLALVARELGLGEYLVLGGGELKSGGFRRDSILADALESIIG 121 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+ LDGG V ++ R A+ ++DAKT LQEW A+ P Y+VT G Sbjct: 122 AMLLDGGEPRCREVVLAWFAPRLDAISPQSAQKDAKTRLQEWLQARKFELPTYEVTQVEG 181 Query: 183 PDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLK 221 F V + S+R AEQ AA+ L+ Sbjct: 182 LAPKQTFDVQCSLDNVQQIFIAQGASRRKAEQEAASLALE 221 >gi|85705112|ref|ZP_01036212.1| Ribonuclease III [Roseovarius sp. 217] gi|85670434|gb|EAQ25295.1| Ribonuclease III [Roseovarius sp. 217] Length = 238 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 124/221 (56%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + R+G+ F LL +ALTHSS+ ++ +RLEFLGDR+LGL++S L + Sbjct: 15 SAEIKAFQTRLGHEFTATELLIRALTHSSMVTPNRDDNQRLEFLGDRVLGLVMSEALLSQ 74 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A EG+L+ RFN+LV E C+ VARE+DL + +++ ++ D +E++ Sbjct: 75 DKGATEGQLAPRFNALVRKEACADVAREIDLGAVLKLGRSEMLSGGRRKEALLGDAMEAV 134 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YLD G + A V + W R + RDAKT LQEWA A+ P+Y R G Sbjct: 135 IAAIYLDAGFDAARAVVLRLWGARIGEVKDDARDAKTALQEWAQARGLPPPDYIELRRKG 194 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH P FT+ ++ A+ SKR AEQ AA +L R Sbjct: 195 PDHAPVFTISAQLKSGESAEATAGSKRQAEQTAAKALLARL 235 >gi|296273889|ref|YP_003656520.1| ribonuclease III [Arcobacter nitrofigilis DSM 7299] gi|296098063|gb|ADG94013.1| ribonuclease III [Arcobacter nitrofigilis DSM 7299] Length = 223 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 113/221 (51%), Gaps = 4/221 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y LEK + Y F N+ L+ +ALTH S Y + ERLEFLGD +L L++ L+ F Sbjct: 3 DYVNLEKCLDYQFKNKDLIVEALTHKSFKKPY--NNERLEFLGDAVLNLIVGEYLYKKFP 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+LS SLV+ +++A E+ L +I +S ++ SI +D ES++ Sbjct: 61 QSNEGDLSKIRASLVNETGFTKLANEIKLGDYIYLSIAEERNKGRTKASILSDAFESIMG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL+ G+E + ++ + D KT LQE A+FG P+YK+ G Sbjct: 121 AIYLESGLETLKPIILTLLEKSYDKINLDVLFSDYKTALQEITQAEFGSIPDYKIEGSYG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH F V + I+ Q + SK+ A+Q A L + Sbjct: 181 PDHKKEFEVSIWINNQCYGQAIGKSKKLAQQAVAKIALDKL 221 >gi|257452427|ref|ZP_05617726.1| ribonuclease III [Fusobacterium sp. 3_1_5R] Length = 232 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 8/231 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 MS LE RI Y F +++LL+ AL H S + ++ + E+LE LGD +LGL+++ Sbjct: 1 MSK-NLVDLEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLVVA 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + KEG L+ + VS + ++R+L + ++ +S SI Sbjct: 60 EYLYQKYPEEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174 DV E+++ A+YLD G A +V + K F D KT LQE+ K+ P+ Sbjct: 120 DVFEAILGAIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDIPK 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 Y + GPDH F + V+I A+ +K+ AEQ+AA ++ K G+ Sbjct: 180 YTLVGEEGPDHRKLFEMQVQIQNN-IAKAKGTNKKIAEQMAAKQLCKELGV 229 >gi|83593187|ref|YP_426939.1| RNAse III [Rhodospirillum rubrum ATCC 11170] gi|83576101|gb|ABC22652.1| RNAse III [Rhodospirillum rubrum ATCC 11170] Length = 221 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 120/221 (54%), Gaps = 2/221 (0%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 A + L+ + + F + +LL +ALTH S + SYERLEFLGDR+LGL+++ +L+ Sbjct: 2 ARDLNALQIALDHRFTDPALLARALTHRS--REGRPSYERLEFLGDRVLGLVVAEMLYAR 59 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F + EG L+ R SLV +T ++VA+ + L + +S + F S+ DV E++ Sbjct: 60 FPTEDEGALARRHASLVRQDTVARVAQSVGLGELMELSRGEEELGGQFNPSLLCDVCEAV 119 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + AL+LDGG A FV+ W + +DAKT LQEWA + P Y V R G Sbjct: 120 LGALHLDGGYAKAQRFVEARWAPLMAEDLTPPKDAKTALQEWAQGRGLPLPTYAVEGRDG 179 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P H P FTV V + + SKR AEQ AA +L R Sbjct: 180 PPHKPMFTVSVTVKDNGSESALGASKRLAEQAAAQRLLDRL 220 >gi|167630237|ref|YP_001680736.1| ribonuclease iii [Heliobacterium modesticaldum Ice1] gi|226735377|sp|B0TGW4|RNC_HELMI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|167592977|gb|ABZ84725.1| ribonuclease iii [Heliobacterium modesticaldum Ice1] Length = 235 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 109/220 (49%), Gaps = 5/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L +RIG A + + LE ALTH S + E +RLEFLGD +LGL+I LF Sbjct: 9 AELARRIGIASEDLATLEMALTHPSFVYENPQAPPEHNQRLEFLGDAVLGLVIGEQLFVR 68 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + + EGELS R ++V + AR L L +++++ SI AD +E++ Sbjct: 69 YPTWTEGELSRRRAAVVCEANLADGARRLQLGAWLKLGRGEEASGGREKPSILADALEAV 128 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRS 181 I A++L GGIE A F+ + + D KT QEW Y + S Sbjct: 129 IGAIFLSGGIEAARRFIVDLFGDALANAQNLVSGDNKTAFQEWVQRTGPADIRYCIVDES 188 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDHD RF V ++G A G +K+ AEQ AA ++ Sbjct: 189 GPDHDKRFVAAVMVNGTVIADGQGRTKKEAEQQAAGRAMR 228 >gi|298381809|ref|ZP_06991408.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli FVEC1302] gi|298279251|gb|EFI20765.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli FVEC1302] Length = 215 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 110/205 (53%), Gaps = 6/205 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L++ F E Sbjct: 1 LQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALYHRFPRVDE 57 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++ARE +L +R+ K SI AD VE+LI ++L Sbjct: 58 GDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFL 117 Query: 129 DGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D I+ + +++ R + G ++D KT LQE+ + P Y V G HD Sbjct: 118 DSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHD 177 Query: 187 PRFTVVVEISGL-APAQGMDCSKRA 210 FT+ ++SGL P G S+R Sbjct: 178 QEFTIHCQVSGLSEPVVGTGSSRRK 202 >gi|84684005|ref|ZP_01011907.1| Ribonuclease III [Maritimibacter alkaliphilus HTCC2654] gi|84667758|gb|EAQ14226.1| Ribonuclease III [Rhodobacterales bacterium HTCC2654] Length = 226 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 86/222 (38%), Positives = 124/222 (55%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + RIG+ F LL +ALTH SIS + +RLEFLGDR+LGL+++ + Sbjct: 4 SADLKGFANRIGHDFKRPELLIRALTHGSISSDTRPDNQRLEFLGDRVLGLVMAEAMLAA 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A EG+L+ RFN+LV E C+ VAR+++L + +++ + ++ D +E++ Sbjct: 64 DKEASEGQLAPRFNALVRKEACADVARQVELGAVLKLGRSEQMSGGRRKQALLGDAMEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YLD G E A + + W R + RDAKT LQEWA A+ P Y R G Sbjct: 124 IAAVYLDAGFEAAREMIVRLWGDRIGAVEEDARDAKTALQEWAQARKMQPPTYVEIARDG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH P FT+ ++ A+ SKRAAEQ AA +L+R G Sbjct: 184 PDHAPEFTIEAQLENGEAARAKANSKRAAEQDAARALLERLG 225 >gi|114331755|ref|YP_747977.1| ribonuclease III [Nitrosomonas eutropha C91] gi|122313494|sp|Q0AF70|RNC_NITEC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|114308769|gb|ABI60012.1| RNAse III [Nitrosomonas eutropha C91] Length = 245 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 103/220 (46%), Gaps = 6/220 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y+ +++GY F LL++ALTH S+ + ERLEFLGD +L +STLLF F Sbjct: 23 DYTVFSQKLGYTFKQPDLLQEALTHRSLGFP---NNERLEFLGDSVLNCAVSTLLFKRFL 79 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ + V+ + Q+A L + I + RK SI A+ +E++I Sbjct: 80 LLPEGDLTRLRANFVNQDALHQLASALGIGELILLGDGERKSGGHQRPSILANAMEAIIG 139 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL+ G E + + L F +D KT LQE+ ++ PEY G Sbjct: 140 AIYLESGFEKVDQVIVALYDPLLNQLDPDLFGKDPKTLLQEYLQSRKVDLPEYSTLLTRG 199 Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 H F V I A G S+R AEQ AA K Sbjct: 200 DAHAQVFHVECVIPEFAIRTSGEGTSRRRAEQEAARRAYK 239 >gi|149194957|ref|ZP_01872050.1| ribonuclease III [Caminibacter mediatlanticus TB-2] gi|149134878|gb|EDM23361.1| ribonuclease III [Caminibacter mediatlanticus TB-2] Length = 227 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 119/219 (54%), Gaps = 4/219 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L+K +GY F + L+ +ALTH S S + + ERLE+LGD +L L++ L+N F A Sbjct: 4 EELQKSLGYQFKDEKLITEALTHRSYSKEF--NNERLEYLGDAVLDLIVGEYLYNLFPKA 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG LS +LV+ E+ ++A+ L+L ++ +S + SI + E+LI AL Sbjct: 62 EEGILSKLRAALVNEESFDKLAKRLNLGKYLFLSPAEENNKGREKPSILSSAFEALIGAL 121 Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YL+ G + A K K+ + + +D KT LQE A FGV PEY++ +GPD Sbjct: 122 YLEAGFDKAKEIALKLLKEEYPKITPEELLKDYKTTLQEITQAHFGVVPEYRLLSATGPD 181 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H F + V I+ A+ SK+AA+Q A +++ Sbjct: 182 HKKEFEIGVFINDREYARAKGRSKKAAQQEGARLTIEKL 220 >gi|238916990|ref|YP_002930507.1| ribonuclease III [Eubacterium eligens ATCC 27750] gi|238872350|gb|ACR72060.1| ribonuclease III [Eubacterium eligens ATCC 27750] Length = 237 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 112/224 (50%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M S + IGY F + SLLE ALTHSS ++ ++ ER+EFLGD +L L S Sbjct: 1 MHNKNLSVFMQTIGYDFKDISLLEVALTHSSYANEQKKGNCCDNERMEFLGDAVLELSSS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ + EG+++ S+V T + AR + L +FIR+ SI + Sbjct: 61 DYIYKNHAEMAEGKMTRLRASIVCEPTLALCARAIKLDTFIRLGKGEELTGGRSRDSIVS 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D E++I A+YLDGG A FV+K+ L + K D+KT LQE +Y+ Sbjct: 121 DACEAVIGAIYLDGGFANAKEFVNKFIL-NDLDNKKLFFDSKTILQEVIQGLGKE-VDYE 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP+H+ +F V + GL +G +K++A Q AA L Sbjct: 179 FIGEEGPEHNKQFVVAAVVDGLFNIKGTGHTKKSASQNAAYAAL 222 >gi|51245097|ref|YP_064981.1| ribonuclease III [Desulfotalea psychrophila LSv54] gi|81642476|sp|Q6ANV0|RNC_DESPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|50876134|emb|CAG35974.1| related to ribonuclease III [Desulfotalea psychrophila LSv54] Length = 241 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 5/226 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTL 58 + +++ EK+I Y F + LL+KAL HSS + ++ ERLEF+GD +L L++ Sbjct: 12 NRQKHAEFEKKINYKFIDLRLLQKALIHSSYAFEQAQAGKNNERLEFVGDAVLDLVVGNA 71 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ F +EGEL+ +LV+ + +AR+++L F+ + +SI + Sbjct: 72 LYRRFPEMREGELTRLRAALVNEGHLATMARKINLGYFLCLGKGEDNSKGREKSSILSCA 131 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E++I A++ DGG + V++++ K DAK+ LQE K P Y+ Sbjct: 132 YEAVIGAIFQDGGYDAVAALVERFFLPVIDRRKEDLLLADAKSRLQEILQEKHNEGPSYR 191 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + GP H RFT+ V G SK+ AEQ AA +K+ Sbjct: 192 LDNEEGPSHKKRFTISVLFRDEVLGTGEAGSKKEAEQRGAALAIKK 237 >gi|257466297|ref|ZP_05630608.1| ribonuclease III [Fusobacterium gonidiaformans ATCC 25563] Length = 232 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 8/231 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 MS LE RI Y F +++LL+ AL H S + ++ + E+LE LGD +LGL+++ Sbjct: 1 MSK-NLVDLEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLVVA 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + KEG L+ + VS + ++R+L + ++ +S SI Sbjct: 60 EYLYQKYPEEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174 DV E+++ A+YLD G A +V + K F D KT LQE+ K+ P+ Sbjct: 120 DVFEAILGAIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDIPK 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 Y + GPDH F + V+I A+ +K+ AEQ+AA ++ K G+ Sbjct: 180 YTLVGEEGPDHRKLFEMQVQIQNN-IAKAKGTNKKVAEQMAAKQLCKELGV 229 >gi|260551498|ref|ZP_05825682.1| dsRNA-specific ribonuclease [Acinetobacter sp. RUH2624] gi|260405492|gb|EEW98985.1| dsRNA-specific ribonuclease [Acinetobacter sp. RUH2624] Length = 230 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 119/228 (52%), Gaps = 9/228 (3%) Query: 1 MSALRYS----TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56 M+ ++ L RIGY F LL+ ALTH S+SH Y +YERLEFLGD +LG++I+ Sbjct: 1 MTKHQFKLSDPRLLSRIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIA 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L++ + EG L+ +LV E ++A +L L+ + +S+ K SI A Sbjct: 59 NYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILA 118 Query: 117 DVVESLIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTP 173 D VE++I A+YLD + + V K++ ++ +D K+ LQE+ A+ P Sbjct: 119 DTVEAIIGAIYLDSSDLNLLKDIVLKWYVPYLDHIEPTDQLKDPKSRLQEYLQARKKPLP 178 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y+V G F V + GL G S+R AEQ AAAE+LK Sbjct: 179 VYEVVDIQGDAPHQHFKVECLVDGLPKIYGEGSSRRFAEQAAAAEILK 226 >gi|50122200|ref|YP_051367.1| ribonuclease III [Pectobacterium atrosepticum SCRI1043] gi|81644286|sp|Q6D219|RNC_ERWCT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|49612726|emb|CAG76176.1| ribonuclease III [Pectobacterium atrosepticum SCRI1043] Length = 226 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 70/213 (32%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQRKLGYTFQQYELLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 DRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDILNIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRA 210 G HD FT+ ++SG + + G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRK 210 >gi|298242449|ref|ZP_06966256.1| ribonuclease III [Ktedonobacter racemifer DSM 44963] gi|297555503|gb|EFH89367.1| ribonuclease III [Ktedonobacter racemifer DSM 44963] Length = 227 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 115/221 (52%), Gaps = 8/221 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 + LE + F N +LL ALTH S + + S ERLEFLGD IL L+ + L+ Sbjct: 2 HEELEAILDIQFHNPNLLTLALTHRSYIYEAAGEGRSSNERLEFLGDSILALISADFLYR 61 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EGEL+ LV ET + AR+++L++F+ + + + A E+ Sbjct: 62 TFPDLAEGELTDARAVLVRTETLANFARDINLSNFLLMGKGEQHSGGGQR--VLASAFEA 119 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A+YLD G++ TF+ K + A + + +D K+ QE A A G+TP Y++ Sbjct: 120 LLGAIYLDQGLDAVQTFLLKRLEPLAHTIVRNRLFKDNKSLFQELAQAHDGITPSYRLVN 179 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + GP H+ FT+ V + +G +K++AEQ AA + L Sbjct: 180 QEGPSHNREFTIEVLLGEQVAGRGQGRNKQSAEQEAARQAL 220 >gi|213419257|ref|ZP_03352323.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 213 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 5/197 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 20 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 77 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++K R + G ++D KT LQE+ + P Y V Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196 Query: 179 FRSGPDHDPRFTVVVEI 195 G HD FT+ ++ Sbjct: 197 QVRGEAHDQEFTIHCQV 213 >gi|237748853|ref|ZP_04579333.1| ribonuclease III [Oxalobacter formigenes OXCC13] gi|229380215|gb|EEO30306.1| ribonuclease III [Oxalobacter formigenes OXCC13] Length = 277 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 74/220 (33%), Positives = 111/220 (50%), Gaps = 6/220 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + + L++RIGY+F LL+ ALTH S S + ERLEFLGD +L + + L+ + Sbjct: 12 MNVNVLQERIGYSFRQIDLLQTALTHRSFSSHH---NERLEFLGDSLLNCVTAINLYERY 68 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS +SLV + ++A++LD++SF+R+ K SI AD +E+L Sbjct: 69 VELNEGNLSRLRSSLVRQQALYEIAQKLDMSSFLRLGEGELKAGGFKRPSILADAMEALF 128 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD E + + + L F +DAKT+LQE+ PEY+V Sbjct: 129 GAIFLDSDFETVRRVITQLFTDMMKGLDPETFGKDAKTQLQEYLQGHKLALPEYQVVATH 188 Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220 G H+ F + I G S+RA EQ AA + L Sbjct: 189 GAAHNQEFEIECTIGKFGIHVFGTGSSRRAGEQEAAQKAL 228 >gi|203284601|ref|YP_002222341.1| ribonuclease III [Borrelia duttonii Ly] gi|203288135|ref|YP_002223150.1| ribonuclease III [Borrelia recurrentis A1] gi|201084044|gb|ACH93635.1| ribonuclease III [Borrelia duttonii Ly] gi|201085355|gb|ACH94929.1| ribonuclease III [Borrelia recurrentis A1] Length = 243 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59 + + + F + LL +L+HSS ++ + + + ERLEFLGD +L L+I+ L Sbjct: 13 KQKLNEFLMGLHIDFNDIYLLNMSLSHSSYANEFDQKYANNERLEFLGDSVLNLIITDYL 72 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EGELS + +VS ++ S +AREL+L ++I + + I AD + Sbjct: 73 YKFYPDKSEGELSKARSYIVSEDSLSSIARELNLGNYILLGRGEENNDGRNKKGILADAI 132 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + ALYLDGG A TFV + ++ R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 133 EAFVGALYLDGGFSKASTFVVELFEVHIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 192 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH+ F V + ++ + G SK+ AE +AA LK Sbjct: 193 AKELGPDHNKIFCVELYVNDKFVSNGKGKSKKEAEMIAAEMALKN 237 >gi|169795096|ref|YP_001712889.1| ribonuclease III [Acinetobacter baumannii AYE] gi|239501066|ref|ZP_04660376.1| ribonuclease III [Acinetobacter baumannii AB900] gi|260556582|ref|ZP_05828800.1| ribonuclease III [Acinetobacter baumannii ATCC 19606] gi|301345824|ref|ZP_07226565.1| ribonuclease III [Acinetobacter baumannii AB056] gi|301512403|ref|ZP_07237640.1| ribonuclease III [Acinetobacter baumannii AB058] gi|301594764|ref|ZP_07239772.1| ribonuclease III [Acinetobacter baumannii AB059] gi|332851055|ref|ZP_08433164.1| ribonuclease III [Acinetobacter baumannii 6013150] gi|332869696|ref|ZP_08438884.1| ribonuclease III [Acinetobacter baumannii 6013113] gi|332875945|ref|ZP_08443731.1| ribonuclease III [Acinetobacter baumannii 6014059] gi|238685526|sp|A3M7P2|RNC_ACIBT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238688097|sp|B0VCU0|RNC_ACIBY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|169148023|emb|CAM85886.1| ribonuclease III, ds RNA [Acinetobacter baumannii AYE] gi|193078016|gb|ABO12936.2| ribonuclease III [Acinetobacter baumannii ATCC 17978] gi|260409841|gb|EEX03141.1| ribonuclease III [Acinetobacter baumannii ATCC 19606] gi|332730219|gb|EGJ61544.1| ribonuclease III [Acinetobacter baumannii 6013150] gi|332732598|gb|EGJ63831.1| ribonuclease III [Acinetobacter baumannii 6013113] gi|332735811|gb|EGJ66852.1| ribonuclease III [Acinetobacter baumannii 6014059] Length = 230 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 120/228 (52%), Gaps = 9/228 (3%) Query: 1 MSALRYS----TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56 M+ ++ L RIGY F LL+ ALTH S+SH Y +YERLEFLGD +LG++I+ Sbjct: 1 MTKHQFKLSDPRLLSRIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIA 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L++ + EG L+ +LV E ++A +L L+ + +S+ K SI A Sbjct: 59 NYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILA 118 Query: 117 DVVESLIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTP 173 D VE++I A+YLD + + V K++ ++ +D K+ LQE+ A+ P Sbjct: 119 DTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLP 178 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y+V G F V + GL+ G S+R AEQ AAAE+LK Sbjct: 179 VYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILK 226 >gi|50085655|ref|YP_047165.1| ribonuclease III [Acinetobacter sp. ADP1] gi|81392620|sp|Q6F9C2|RNC_ACIAD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|49531631|emb|CAG69343.1| ribonuclease III, ds RNA [Acinetobacter sp. ADP1] Length = 230 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 79/217 (36%), Positives = 117/217 (53%), Gaps = 5/217 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ RIGY F LL+ ALTH S+SH Y +YERLEFLGD +LG++I+ L+ + Sbjct: 12 RLQSRIGYEFKQLELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYQAYPHEN 69 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ +LV E ++A +L L+ + +S+ K SI AD VE++I A+Y Sbjct: 70 EGRLTRMRATLVRQEALGKIANDLKLSRCLILSTGELKSGGHHRESILADTVEAIIGAIY 129 Query: 128 LDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +D + + V K++ ++ +D K+ LQE+ A+ P Y+V G Sbjct: 130 VDSNDLNLLKNIVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDA 189 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + F VV + GL G S+R AEQ AAAE+LK Sbjct: 190 PNQHFKVVCLVEGLPRVMGEGSSRRFAEQTAAAEILK 226 >gi|192359963|ref|YP_001983041.1| ribonuclease III [Cellvibrio japonicus Ueda107] gi|190686128|gb|ACE83806.1| ribonuclease III [Cellvibrio japonicus Ueda107] Length = 225 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L+Y LE+R+GY+F ++ L+ ALTH S + ERLEFLGD IL LI LF Sbjct: 1 MINLKYQRLEQRLGYSFNDQRQLQLALTHRS---HGASNNERLEFLGDSILNFLIGEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 D A+EG++S + LV +T +++ARE +L + + K SI AD VE Sbjct: 58 LRLDEAREGQMSRLRSQLVRGDTLAELAREFELGECLVLGEGELKSGGHRRDSILADAVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YL+ G++ V ++ R A+ +D K+ LQE+ A+ PEY+V Sbjct: 118 AIIGAIYLESGLDTCRERVLAWYGDRLDAISLDTSAKDPKSRLQEYLQAQRQPLPEYRVV 177 Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLK 221 G H FT+ ++ Q S+R AE+ AAA +LK Sbjct: 178 EVGGEGHAQVFTIECHVAIAKQSTQAQASSRREAEKQAAAAMLK 221 >gi|261820519|ref|YP_003258625.1| ribonuclease III [Pectobacterium wasabiae WPP163] gi|261604532|gb|ACX87018.1| ribonuclease III [Pectobacterium wasabiae WPP163] Length = 226 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 70/213 (32%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQRKLGYTFQQYELLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDILNIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRA 210 G HD FT+ ++SG + + G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRK 210 >gi|303231076|ref|ZP_07317816.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6] gi|302514207|gb|EFL56209.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6] Length = 247 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 104/225 (46%), Gaps = 6/225 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 L R+ + S+L+ A TH+S ++ ++ +RLEFLGD +L L+I LF Sbjct: 19 SLHELVSRLHIPNIDISILDCAFTHTSYANEHKSKHIHHNQRLEFLGDAVLDLIIGEYLF 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG L+ + V ++ + V+R L L ++ + + S SI AD E Sbjct: 79 TTYPDMSEGNLTKIKAATVCEDSLATVSRTLHLGDYLLLGHGEKSSGGSDRKSILADTFE 138 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 SLI ALY+ + FV ++ GK +D KT LQE+ Y + Sbjct: 139 SLIGALYITTDYKTVMDFVLHQLAPNLKQALEGKRGKDYKTLLQEFVQRDGDKHIVYSLI 198 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDH F + V I G+ G SK+ AEQ AA L+R Sbjct: 199 SESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQHAAQLTLERL 243 >gi|152995275|ref|YP_001340110.1| ribonuclease III [Marinomonas sp. MWYL1] gi|189043327|sp|A6VUP6|RNC_MARMS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|150836199|gb|ABR70175.1| Ribonuclease III [Marinomonas sp. MWYL1] Length = 227 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 87/217 (40%), Positives = 120/217 (55%), Gaps = 7/217 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS+L Y L +RIGY FA+ LLE ALTH S ++ ERLEFLGD IL +I+ LF Sbjct: 1 MSSL-YQKLSRRIGYFFADLGLLELALTHRSFG---GKNNERLEFLGDSILNYVIAEDLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F AKEGELS SLV +T +++ARE +L ++++ + K SI AD VE Sbjct: 57 HRFPKAKEGELSRLRASLVKGDTLAELAREFELGDYLKLGAGELKSGGFRRDSILADTVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +I A+YLD G++V + ++K+R + +DAKT LQE+ A+ P+Y V Sbjct: 117 GIIGAMYLDAGMDVCRQHILAWYKERLDATSLKIVTKDAKTRLQEFLQARKHALPQYDVV 176 Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQV 214 G HD F V I +G S+R AEQ Sbjct: 177 NIVGEPHDQTFYVHCHIELCEEFIEGKGNSRRIAEQN 213 >gi|111073612|emb|CAL29457.1| Ribonuclease III [Wolbachia endosymbiont of Onchocerca volvulus] Length = 243 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 122/226 (53%), Gaps = 5/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L T+ + I Y F N S+L++ALTH S++ E+YERLEFLGD IL +++S Sbjct: 9 MQNLN-DTISEIINYRFKNYSILKEALTHPSLNKRNSKNQIENYERLEFLGDSILNMVVS 67 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 T+LF F KEG L+ R LV T + VA+ + L FI + + R + + Sbjct: 68 TILFKLFPKEKEGRLAKRKTDLVCGSTIANVAKVIKLGDFIIMDNSERCNGGKYNLKNLE 127 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + +E+LI A+Y+DGG FV +YW++ A +D KT LQEW P+Y+ Sbjct: 128 NALEALIGAIYIDGGFRNVERFVTQYWEKLAKYMLNPPQDPKTSLQEWTQKNKLPLPKYE 187 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + ++GP H+P FT+ V I SK+ AEQ AA ++ + Sbjct: 188 LKKQTGPAHNPEFTISVYIKNYGRVSACASSKKVAEQKAAELMIGK 233 >gi|317129239|ref|YP_004095521.1| ribonuclease III [Bacillus cellulosilyticus DSM 2522] gi|315474187|gb|ADU30790.1| ribonuclease III [Bacillus cellulosilyticus DSM 2522] Length = 253 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 104/225 (46%), Gaps = 5/225 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 L Y + N + +A THSS + ++ + ERLEFLGD +L L IS Sbjct: 26 KLEYKDFLTSLEVKTTNVDIYIQAFTHSSYVNEHRIRPHDDNERLEFLGDAVLELAISQY 85 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF ++ + EGE++ ++V + +++A EL + + ++ ADV Sbjct: 86 LFKNYANMSEGEMTKLRAAIVCEPSLAKIADELKFGERVLLGKGEEMTGGRKRPALLADV 145 Query: 119 VESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ES + ALYLD G++ F+ + + A + D K++LQE + +YK+ Sbjct: 146 FESFVGALYLDLGMDAVYDFLKVNVYPKIADGAFSDMMDYKSQLQELVQREGQGQIQYKI 205 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H F V + G SK+ AEQ+AA + L++ Sbjct: 206 VQERGPAHAREFVSEVWLENKLLGIGAGRSKKEAEQMAAQKALEK 250 >gi|300311260|ref|YP_003775352.1| dsRNA-specific ribonuclease [Herbaspirillum seropedicae SmR1] gi|300074045|gb|ADJ63444.1| dsRNA-specific ribonuclease (RNAse III) protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 114/221 (51%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+G+ F + SLL++ALTH S S + ERLEFLGD +L ++++LLF + Sbjct: 1 MDPQLLQQRLGHTFKDASLLQQALTHRSHSALH---NERLEFLGDSVLNCVVASLLFERY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 D EG+LS +LV ++ ++A+ L+L+ F+R+ K SI AD +E+L Sbjct: 58 DKIDEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G E A + + + +DAKT LQE+ K P+Y V Sbjct: 118 GAIFLDSGFEAARAVIRSLYVPVLEHVDPRTLGKDAKTLLQEFLQGKKIPLPQYNVIATH 177 Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221 G H F + + L G S+RA EQ AA L+ Sbjct: 178 GAAHSQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALE 218 >gi|290968970|ref|ZP_06560505.1| ribonuclease III [Megasphaera genomosp. type_1 str. 28L] gi|290780926|gb|EFD93519.1| ribonuclease III [Megasphaera genomosp. type_1 str. 28L] Length = 236 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 112/233 (48%), Gaps = 10/233 (4%) Query: 1 MSALRYSTLEKRI---GYA-FANRSLLEKALTHSSISHSYQES----YERLEFLGDRILG 52 M R LE+ + G F N LL++ALTHSS ++ ++ ERLEFLGD IL Sbjct: 1 MDNTRKKQLEEFLRTVGLPPFQNLLLLDQALTHSSYANEHKIRHGYFNERLEFLGDAILD 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L++ LF + +EGELS S+VS + V + ++ + Sbjct: 61 LVVGEYLFLQYPQMQEGELSKARASIVSEAPLAAVCSAFHMGKYLLLGHGEISSGGRERP 120 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFG 170 I AD E+++ A+Y+D E A F+ ++ + +++G + +D KT QE+ Sbjct: 121 GILADAFEAVVGAVYMDASYEEARKFILRHLRDYLALVENGHYDQDYKTLFQEYIQRDGE 180 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y + SGPDHD FT+ V G +G SK+ AEQ AA + L R Sbjct: 181 HHITYSLCKESGPDHDKTFTMQVAADGKVLGEGCGKSKKMAEQHAARQALLRL 233 >gi|291278588|ref|YP_003495423.1| ribonuclease III [Deferribacter desulfuricans SSM1] gi|290753290|dbj|BAI79667.1| ribonuclease III [Deferribacter desulfuricans SSM1] Length = 231 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 82/220 (37%), Positives = 118/220 (53%), Gaps = 4/220 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 LE+ IGY F N+SLL +ALTHSS ++ + +YERLEFLGD +L L+++ L Sbjct: 3 NIEELEELIGYRFKNKSLLLEALTHSSYAYEKKLKRNYERLEFLGDSVLQLIVTEYLVIK 62 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + KEG LS + VS + S++A ++ L F+ + SI AD+ ESL Sbjct: 63 YKEFKEGVLSKYRSFFVSEDIISEIALKIRLNDFLMLGKGEIVSGGYTKPSILADIFESL 122 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A+YLDGG A V + + D KTELQ+ KFG PEYKV Sbjct: 123 LGAVYLDGGYNEARRIVLMLMSELMDEYIEKGIIIDPKTELQKITQQKFGYIPEYKVLKE 182 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP+HD FTV ++++ G+ +K+ AE AA++ L Sbjct: 183 EGPEHDKVFTVELKLADGNKFIGVGRNKKKAEIDAASKAL 222 >gi|184159116|ref|YP_001847455.1| ribonuclease III [Acinetobacter baumannii ACICU] gi|183210710|gb|ACC58108.1| dsRNA-specific ribonuclease [Acinetobacter baumannii ACICU] Length = 234 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 79/217 (36%), Positives = 116/217 (53%), Gaps = 5/217 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L RIGY F LL+ ALTH S+SH Y +YERLEFLGD +LG++I+ L++ + Sbjct: 16 RLLSRIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPHEN 73 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ +LV E ++A +L L+ + +S+ K SI AD VE++I A+Y Sbjct: 74 EGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIY 133 Query: 128 LDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LD + + V K++ ++ +D K+ LQE+ A+ P Y+V G Sbjct: 134 LDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDA 193 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V + GL+ G S+R AEQ AAAE+LK Sbjct: 194 PHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILK 230 >gi|297343244|pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni gi|297343245|pdb|3N3W|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 248 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF+ F Sbjct: 27 NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 84 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I Sbjct: 85 KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIG 144 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++L+ G E A T + ++ + + +D KT+LQE K G TP+Y+ G Sbjct: 145 AIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 204 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 205 PDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 246 >gi|254392460|ref|ZP_05007640.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064] gi|197706127|gb|EDY51939.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064] Length = 300 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 16 AASSHTLLEGRLGYRLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L +FIR+ SI AD + Sbjct: 75 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGAFIRLGRGEEGTGGRDKASILADTL 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS D KT LQE ++ PEY V Sbjct: 135 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTASEGLGVPEYLV 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 237 >gi|254486436|ref|ZP_05099641.1| ribonuclease III [Roseobacter sp. GAI101] gi|214043305|gb|EEB83943.1| ribonuclease III [Roseobacter sp. GAI101] Length = 228 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 83/211 (39%), Positives = 123/211 (58%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E RIGY F+ LL +A+TH+S+S + ++ +RLEFLGDR+LGL+++ L Sbjct: 4 SADLRAFEGRIGYKFSKPELLIRAVTHASMSSANRDDNQRLEFLGDRVLGLVMAEALLML 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A EG+L+ RFN+LV E C+ VARE+D+ + +++ ++ D +E++ Sbjct: 64 DPKATEGQLAPRFNALVRKEACADVAREIDMGAVLKLGRSEMLSGGRRKQALLGDAIEAI 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+Y+DGG + A + + W R + RDAKT LQEWA A+ P Y T R G Sbjct: 124 IAAVYMDGGFDAARDLIIRLWGDRVQTVKQDARDAKTALQEWAQARGFPPPSYVQTDRQG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 PDH P FT+ ++ A A + SKR AEQ Sbjct: 184 PDHAPVFTITAKVQNGASAVAVAPSKRQAEQ 214 >gi|88797948|ref|ZP_01113535.1| ribonuclease III [Reinekea sp. MED297] gi|88779145|gb|EAR10333.1| ribonuclease III [Reinekea sp. MED297] Length = 219 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 84/217 (38%), Positives = 123/217 (56%), Gaps = 6/217 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 K IGY F + SLLE+ALTH S + +++ ERLEFLGD IL I+ L++ F +AKEG+ Sbjct: 3 KAIGYQFESESLLEQALTHRSYA---RKNNERLEFLGDAILNCTIAQALYHQFPNAKEGQ 59 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 +S LV +T +++ RE +L F+R+ S K SI AD VE++I A+ LD Sbjct: 60 MSRLRAHLVKGDTLAEIGREFELGEFLRLGSGELKSGGFRRDSILADAVEAIIGAISLDA 119 Query: 131 GIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 + A + ++++R L + +D+KT LQE+ A+ PEY+V +G H Sbjct: 120 DLGKAQQVLLSWYEERLSNLDLKENIKDSKTRLQEFLQARRLPLPEYQVKTITGEAHQQE 179 Query: 189 FTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREG 224 FTV ++ L P G+ S+R AEQ AA LK G Sbjct: 180 FTVHCQVESLETPMVGVGSSRRMAEQEAANAALKALG 216 >gi|303229664|ref|ZP_07316452.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a] gi|302515789|gb|EFL57743.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a] Length = 247 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 104/225 (46%), Gaps = 6/225 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 L R+ + S+L+ A TH+S ++ ++ +RLEFLGD +L L+I LF Sbjct: 19 SLHELVSRLHIPNIDISILDCAFTHTSYANEHKFKHIHHNQRLEFLGDAVLDLIIGEYLF 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG L+ + V ++ + V+R L L ++ + + S SI AD E Sbjct: 79 TTYPDMSEGNLTKIKAATVCEDSLATVSRTLHLGDYLLLGHGEKSSGGSDRKSILADTFE 138 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 SLI ALY+ + FV ++ GK +D KT LQE+ Y + Sbjct: 139 SLIGALYITTDYKTVMDFVLHQLAPNLKQALEGKRGKDYKTLLQEFVQRDGDKHIVYSLI 198 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDH F + V I G+ G SK+ AEQ AA L+R Sbjct: 199 SESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQHAAQLTLERL 243 >gi|237746716|ref|ZP_04577196.1| ribonuclease III [Oxalobacter formigenes HOxBLS] gi|229378067|gb|EEO28158.1| ribonuclease III [Oxalobacter formigenes HOxBLS] Length = 273 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 74/220 (33%), Positives = 110/220 (50%), Gaps = 6/220 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L+ RIGY F + +LLE A+TH S S + ERLEFLGD +L + + L+ + Sbjct: 7 INLKMLQDRIGYTFHDAALLETAMTHRSYSSHH---NERLEFLGDSLLNCVTAINLYERY 63 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG LS +SLV + ++A +L+L+ F+R+ K SI AD +E+L Sbjct: 64 AALNEGSLSRLRSSLVRQQALYEIACKLELSRFLRLGEGELKAGGFKRPSILADAMEALF 123 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G E + + + + L + +DAKT+LQE+ PEY V Sbjct: 124 GAVFLDAGFETVKRVITRLFADMMKELDPETYGKDAKTQLQEYLQGHKMALPEYHVVATR 183 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220 G H+ F V I G S+RA EQ AA + L Sbjct: 184 GAAHNQEFEVECVIGKFDIHVYGTGSSRRAGEQEAARKAL 223 >gi|317059911|ref|ZP_07924396.1| ribonuclease 3 [Fusobacterium sp. D12] gi|313685587|gb|EFS22422.1| ribonuclease 3 [Fusobacterium sp. D12] Length = 235 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 115/233 (49%), Gaps = 9/233 (3%) Query: 1 MSAL--RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLL 54 MSA+ LE I Y F +++LL+ AL H S + ++ + ERLE LGD +LGL+ Sbjct: 1 MSAVGRNLVDLEHNINYYFNDKNLLKNALIHRSFGNEHRTYKNINNERLELLGDAVLGLV 60 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ++ L+ + KEG L+ + VS S V+R+L + ++ +S SI Sbjct: 61 VAEYLYQKYPKEKEGVLAKIKSMAVSEPVLSGVSRKLHIGDYLLLSKGEIVTGGRDRNSI 120 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVT 172 D E+++ A+YLD G A +V + K+ F D KT LQE KF Sbjct: 121 LGDAFEAILGAIYLDSGFFAAKEYVLFHLKEIIDHIDDFEEILDFKTILQEHCQKKFKEI 180 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P+Y + GPDH F + V+I A+ +K+ AEQ AA ++ K G+ Sbjct: 181 PKYTLLREEGPDHRKLFEMQVQIQDKV-ARAKGNNKKIAEQKAAKKLCKEMGV 232 >gi|302554407|ref|ZP_07306749.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736] gi|302472025|gb|EFL35118.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736] Length = 274 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 A ++ LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 17 ASSHTLLEGRLGYK-VESALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLY 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+L+ ++V++ ++V R LDL SFIR+ SI AD +E Sbjct: 76 RTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD G++ A V + + KS D KT LQE + PEY VT Sbjct: 136 AVIGAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT 195 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 196 -ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 237 >gi|323340721|ref|ZP_08080973.1| ribonuclease III [Lactobacillus ruminis ATCC 25644] gi|323091844|gb|EFZ34464.1| ribonuclease III [Lactobacillus ruminis ATCC 25644] Length = 230 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 110/221 (49%), Gaps = 7/221 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62 L+ G N L ++A TH+S + + + YER+EFLGD ++ L +S LF Sbjct: 7 KKLKDDYGINVKNTDLFDEAFTHASYVNEHPKEHLKYYERIEFLGDAVMQLCVSEYLFKR 66 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + S EG+LS ++V ++ S+ A+E +IR+ K +S+ D+ ES Sbjct: 67 YPSLPEGKLSRLRAAMVCEDSFSKFAKECHFDEYIRLGKGEEKADARNRSSLLCDIFESF 126 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G + F+ + L G F D KTELQE+ EYK+ Sbjct: 127 IGALYLDQGKDKVVEFISAVVFPK-LDMGWFDHLLDHKTELQEYLQQNGDCKIEYKMLDE 185 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPD+D +T+ V G +G+ SK+ AEQ AA + LK Sbjct: 186 KGPDNDKTYTMAVYADGKKIGEGVGSSKKNAEQAAAYQALK 226 >gi|308061992|gb|ADO03880.1| ribonuclease III [Helicobacter pylori Cuz20] Length = 239 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 116/220 (52%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + L D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH F + + I A SK+ AEQ A + L++ Sbjct: 196 DHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 235 >gi|152978261|ref|YP_001343890.1| ribonuclease III [Actinobacillus succinogenes 130Z] gi|189043288|sp|A6VLV8|RNC_ACTSZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|150839984|gb|ABR73955.1| Ribonuclease III [Actinobacillus succinogenes 130Z] Length = 224 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 120/223 (53%), Gaps = 6/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L+ +IGY F+N +LL++ALTH S + + ERLEFLGD IL L I L+ F Sbjct: 4 LDRLQHKIGYEFSNLTLLKQALTHRSAAKVH---NERLEFLGDAILNLTIGEALYLQFPH 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS +LV +T +++A + DL +++ + + K SI AD VE++I A Sbjct: 61 CNEGELSRMRATLVREKTLAELAHQFDLGNYMALGAGELKSGGFRRASILADCVEAIIGA 120 Query: 126 LYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + LD + V ++++ R ++ G+ ++D KT LQE+ K P Y VT G Sbjct: 121 MSLDSNLPKTMEIVRRWYEVLLRDIQPGENQKDPKTRLQEYLQGKRLALPAYNVTDIQGE 180 Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 H FTV + L G+ S+R AEQVAA ++LK I Sbjct: 181 AHCQTFTVECHVENLDRTFVGVAGSRRKAEQVAAEQILKVLDI 223 >gi|28210930|ref|NP_781874.1| ribonuclease III [Clostridium tetani E88] gi|73917577|sp|Q895M9|RNC_CLOTE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28203369|gb|AAO35811.1| ribonuclease III [Clostridium tetani E88] Length = 235 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 116/228 (50%), Gaps = 5/228 (2%) Query: 1 MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57 M+ + L+ +I F N LL ALTHSS ++ + + ERLEFLGD +L L+I+ Sbjct: 1 MNKYMDLKDLQNKIEIKFENIKLLHIALTHSSYANEKKRIQYNERLEFLGDSVLQLVITE 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF ++ EGELS + +V + +A+ L+L +I++S SI AD Sbjct: 61 YLFMNYKDKSEGELSKKRALIVCENSLFSIAKNLELGEYIKMSKGEELTGGRERISILAD 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEY 175 VE+LIA++YLD GI+V F+ K + K+ + D KT+LQE + Y Sbjct: 121 AVEALIASIYLDKGIDVVREFILKNFYNIVEKAMKDEIILDYKTKLQEIIQKDGDIQINY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GP H +F V+I G+ SK+ +EQ AA + ++ Sbjct: 181 ILIKHEGPPHRRKFYTEVKIKDNVLGYGIGYSKKESEQNAAKKAIENM 228 >gi|255281054|ref|ZP_05345609.1| ribonuclease III [Bryantella formatexigens DSM 14469] gi|255268502|gb|EET61707.1| ribonuclease III [Bryantella formatexigens DSM 14469] Length = 230 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 118/221 (53%), Gaps = 6/221 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 S LE+ GY+F ++ LLE AL HSS ++ +++ ERLEFLGD +L L S L+ Sbjct: 4 DISELEQMTGYSFKDKELLENALRHSSYANEHKKYHLKDNERLEFLGDAVLELSSSEYLY 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 H+ KEGE++ S+V T +Q A ++L SF+R+ + S+ +D +E Sbjct: 64 RHYPKMKEGEMTKLRASIVCEPTLAQCAAAIELGSFLRLGRGEEQTGGRHRDSVVSDAME 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTF 179 +LI A++LDGG A FV+++ ++ K D+KT LQE + + Y + Sbjct: 124 ALIGAIFLDGGFTSAKEFVNRFIL-NGVEHKKLFFDSKTILQEIVQSSYKGEAMSYHLLR 182 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP+HD F V + I +G +K++AEQ AA + Sbjct: 183 EEGPEHDKTFVVQLFIGDKGFEEGRGRTKKSAEQEAAYRTM 223 >gi|291613749|ref|YP_003523906.1| ribonuclease III [Sideroxydans lithotrophicus ES-1] gi|291583861|gb|ADE11519.1| ribonuclease III [Sideroxydans lithotrophicus ES-1] Length = 224 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 6/222 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++++ L KR+GY F LL++ALTH S S ++ ERLEFLGD +L I+ L++ + Sbjct: 1 MKHAALCKRLGYQFLQPQLLQRALTHRSYSAAH---NERLEFLGDSVLNCAIAKYLYDTY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS ++LV+ +T + +A++L+L + + RK SI AD +E+L Sbjct: 58 PDLPEGDLSRLRSNLVNQQTLAILAQQLNLGEQLLLGEGERKSAGFRRPSILADALEALF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ LD G A V + +++ +DAKT LQE ++ P+Y V Sbjct: 118 GAVLLDAGFMAAEKVVLGLYVPFIVQTDLKTLGKDAKTLLQEHLQSRKLALPQYHVAEIK 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKR 222 G H F V EI+ L +QG S+R AEQ+AA ++ Sbjct: 178 GEAHAQTFVVTCEIAQLGLVSQGEGTSRRIAEQIAAERAYQQ 219 >gi|294815350|ref|ZP_06773993.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064] gi|326443704|ref|ZP_08218438.1| ribonuclease III [Streptomyces clavuligerus ATCC 27064] gi|294327949|gb|EFG09592.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064] Length = 303 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 19 AASSHTLLEGRLGYRLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L +FIR+ SI AD + Sbjct: 78 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGAFIRLGRGEEGTGGRDKASILADTL 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS D KT LQE ++ PEY V Sbjct: 138 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTASEGLGVPEYLV 197 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 198 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 240 >gi|270156955|ref|ZP_06185612.1| ribonuclease III [Legionella longbeachae D-4968] gi|289164621|ref|YP_003454759.1| ribonuclease III [Legionella longbeachae NSW150] gi|269988980|gb|EEZ95234.1| ribonuclease III [Legionella longbeachae D-4968] gi|288857794|emb|CBJ11638.1| putative ribonuclease III [Legionella longbeachae NSW150] Length = 227 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 6/224 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + L +R+GY F N + L++ALTH S+ E+YER EFLGD IL +I+ LF+ Sbjct: 2 KIDLERLCRRLGYHFKNSAYLKQALTHCSVG---SENYERFEFLGDSILSFVIANELFHR 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+LS + LV E ++A+E++L F+ + K SI +D +E++ Sbjct: 59 FPLQSEGQLSRLRSFLVRGEMLVELAKEIELGDFLFLGQGELKSGGFRRASILSDALEAV 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 AA++LDGGI+ A + K ++ R +DAKT+LQE+ A+ PEY +T Sbjct: 119 FAAVFLDGGIDCAKEVILKLYRIRLESPNLNDCLKDAKTQLQEYLQAEKIPLPEYILTKI 178 Query: 181 SGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G +H+ F + ++G G ++R AEQ+AA +L+R Sbjct: 179 EGDEHNQIFYITCSVNGMKQQTFGQGSNRRKAEQLAAKAMLERL 222 >gi|268318202|ref|YP_003291921.1| ribonuclease III [Rhodothermus marinus DSM 4252] gi|262335736|gb|ACY49533.1| ribonuclease III [Rhodothermus marinus DSM 4252] Length = 260 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 78/212 (36%), Positives = 110/212 (51%), Gaps = 6/212 (2%) Query: 18 ANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 N +L E+ALTH S+ S+ S ERLEFLGD +LG +++ L+ HF EG L+ Sbjct: 38 RNAALYEQALTHRSVLRGQPDSHLHSNERLEFLGDAVLGFVVAAYLYEHFPDRNEGFLTR 97 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 LV+ E +Q AR L L + +R+S ++ + SI +D E+L+ A+YLD G+E Sbjct: 98 LRAKLVNREALAQAARRLGLGAHVRLSENMERAGGRDNDSILSDAFEALVGAIYLDLGLE 157 Query: 134 VAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 A FV++ RR + K+ L E+A A+ P Y+V GP H FTV Sbjct: 158 AARAFVERALLAPLDLEALARRPDNYKSLLLEFAQARGWPQPRYRVVAEEGPSHARTFTV 217 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 I +G SK+ AEQ AA E L R Sbjct: 218 EAWIGNRRLGRGTAGSKKQAEQQAAREALARL 249 >gi|217033708|ref|ZP_03439135.1| hypothetical protein HP9810_5g50 [Helicobacter pylori 98-10] gi|216943897|gb|EEC23334.1| hypothetical protein HP9810_5g50 [Helicobacter pylori 98-10] Length = 238 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 117/224 (52%), Gaps = 4/224 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ Sbjct: 13 TNSSYTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYH 70 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+LS S+VSA +++A+ + L ++RVSS SI + E+ Sbjct: 71 KFYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEA 130 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+A +YL+ G+ + + L D KT LQE A+F V P Y++ Sbjct: 131 LMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLK 190 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 191 EKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 234 >gi|90021888|ref|YP_527715.1| RNAse III [Saccharophagus degradans 2-40] gi|89951488|gb|ABD81503.1| RNAse III [Saccharophagus degradans 2-40] Length = 226 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 118/221 (53%), Gaps = 8/221 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L R+GY F ++SLL+ AL+H S +++ ER+EFLGD +L +I+ LF F +AK Sbjct: 6 RLVARLGYTFKDKSLLKLALSHRSYG---KQNNERVEFLGDSLLNFIIAEALFAKFPTAK 62 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+L+ +LV ET +++ARE L F+ + K SI AD VE+LI A+Y Sbjct: 63 EGQLTQLRANLVKGETLAEIAREFGLGDFLLLGEGELKSGGFRRASILADAVEALIGAIY 122 Query: 128 LD--GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 LD + V ++ R ++ +DAKT LQE+ + P Y V G Sbjct: 123 LDSNSSMPTCRERVLAWYATRLDKVELKATAKDAKTLLQEYLQERKMPLPTYTVLAEGGE 182 Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H +FTV I+G P + SKR AE++AA ++L + Sbjct: 183 AHSRQFTVECTITGKSKPCSAVGNSKRIAEKLAAEKMLSQL 223 >gi|294631623|ref|ZP_06710183.1| ribonuclease III [Streptomyces sp. e14] gi|292834956|gb|EFF93305.1| ribonuclease III [Streptomyces sp. e14] Length = 275 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 25 TASSHTLLEGRLGYRLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 83 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R LDL +FIR+ SI AD + Sbjct: 84 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTL 143 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS D KT LQE + PEY V Sbjct: 144 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLV 203 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 204 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 246 >gi|152981163|ref|YP_001353060.1| ribonuclease III [Janthinobacterium sp. Marseille] gi|151281240|gb|ABR89650.1| ribonuclease III [Janthinobacterium sp. Marseille] Length = 322 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 113/221 (51%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + + L+ R+G+ F + LL++ALTH S ERLEFLGD IL ++++LLF+ + Sbjct: 1 MDLTLLQNRLGHTFKDAVLLQQALTHRS---HGSVHNERLEFLGDSILNCVVASLLFDRY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+L+ F+R+ K SI AD +E+L Sbjct: 58 SKIDEGDLSRLRANLVKQQSLYEIAQRLELSHFLRLGEGELKSGGFRRPSILADTLEALF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G + A + + ++ +DAKT LQE+ K P+Y V Sbjct: 118 GAIFLDAGFDTARDVIRALYIPILDSVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221 G H+ F + + L G S+RA EQ AA L+ Sbjct: 178 GAAHNQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALE 218 >gi|299769157|ref|YP_003731183.1| ribonuclease III [Acinetobacter sp. DR1] gi|298699245|gb|ADI89810.1| ribonuclease III [Acinetobacter sp. DR1] Length = 230 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 80/217 (36%), Positives = 118/217 (54%), Gaps = 5/217 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L RIGY F LL+ ALTH S+SH Y +YERLEFLGD +LG++I+ L++ + + Sbjct: 12 RLLSRIGYQFKQLELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPNEN 69 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ +LV E ++A +L L+ + +S+ K SI AD VE++I A+Y Sbjct: 70 EGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIY 129 Query: 128 LDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +D G + + V K++ ++ +D K+ LQE+ A+ P Y+V G Sbjct: 130 IDSGDLNLLTDIVLKWYVPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDA 189 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V I GL+ G S+R AEQ AAAE+LK Sbjct: 190 PHQHFKVECLIDGLSKIHGEGSSRRFAEQAAAAEILK 226 >gi|223041196|ref|ZP_03611448.1| ribonuclease III [Campylobacter rectus RM3267] gi|222877555|gb|EEF12684.1| ribonuclease III [Campylobacter rectus RM3267] Length = 222 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 116/218 (53%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++GY F + LL+ ALTH S+ + ERLEFLGD ++ L+I LF+ F E Sbjct: 4 LEEKLGYKFKDEKLLKTALTHKSV--KGGANNERLEFLGDAVMDLVIGDYLFHKFSRLSE 61 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV+ ++ +++A+ L+L I +S + SI +D E+L+ A+YL Sbjct: 62 GDLSKLRAALVNEKSFAELAKYLNLGQLINISPAEEHNGGRLKASILSDAFEALMGAIYL 121 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + G + K +++ + + +D KT LQE A+F P+Y + GPDH Sbjct: 122 ESGFDAVRAASLKAFERCYPDINFDRMVKDYKTALQELTQARFAEIPKYVLVGSKGPDHK 181 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + + ++ ++ SK+ AEQ AA L+ G Sbjct: 182 KEFEIALMLNEREISRAAGKSKKEAEQKAAKTALEILG 219 >gi|325661266|ref|ZP_08149893.1| ribonuclease III [Lachnospiraceae bacterium 4_1_37FAA] gi|325472773|gb|EGC75984.1| ribonuclease III [Lachnospiraceae bacterium 4_1_37FAA] Length = 259 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 82/220 (37%), Positives = 115/220 (52%), Gaps = 8/220 (3%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHFDSA 66 K+IGY F + LL+KA+ HSS ++ Q+ ERLEFLGD +L L S LF S Sbjct: 39 KKIGYTFQKKELLQKAMMHSSYTNEKHMKKQDCNERLEFLGDAVLELTTSEALFFDNPSM 98 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ S+V + VA+EL L S++ + SI +D VE+LI A+ Sbjct: 99 PEGELTKTRASIVCEPALAFVAKELMLGSYLLLGKGEEATGGRQRDSITSDAVEALIGAI 158 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG A F+ K+ L++ K D+KT LQE AKF Y + GPDH+ Sbjct: 159 YLDGGFASAKEFIQKFILS-DLENKKLFYDSKTILQEMVQAKFTENVRYVLEKEEGPDHN 217 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKRE 223 FT I G +K+A+EQ AA + +L+++ Sbjct: 218 KSFTTSAYIGEECYGTGSGRTKKASEQEAAYQTILMLRKK 257 >gi|68171854|ref|ZP_00545186.1| Ribonuclease III [Ehrlichia chaffeensis str. Sapulpa] gi|88658070|ref|YP_507839.1| ribonuclease III [Ehrlichia chaffeensis str. Arkansas] gi|123492713|sp|Q2GFE4|RNC_EHRCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|67998723|gb|EAM85443.1| Ribonuclease III [Ehrlichia chaffeensis str. Sapulpa] gi|88599527|gb|ABD44996.1| ribonuclease III [Ehrlichia chaffeensis str. Arkansas] Length = 226 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 82/219 (37%), Positives = 115/219 (52%), Gaps = 2/219 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63 ++ K I Y F N LL +ALTH S+ + +YERLEFLGD +L ++IS +LFN F Sbjct: 2 IESISKIIKYNFKNPQLLNEALTHPSLVSKDTLKFNYERLEFLGDAVLNIVISEMLFNIF 61 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ + +LV +VA+ ++L FI +S R + +E+LI Sbjct: 62 PKDTEGNLAKKKTALVCGNKLVEVAQSINLGQFIMMSDGERACGGINNFRNLENALEALI 121 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG A F+ +W+ A +DAKT LQE K P Y +SGP Sbjct: 122 GAIYLDGGFTAAQDFIYLFWEHSATHMNVPPQDAKTILQELVQGKRLPAPAYHTIDKSGP 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 DH+P FTV V I Q +K+ AEQ AA+ +L + Sbjct: 182 DHNPTFTVEVRIPSYQAIQATGHNKKLAEQKAASLMLNQ 220 >gi|225374436|ref|ZP_03751657.1| hypothetical protein ROSEINA2194_00051 [Roseburia inulinivorans DSM 16841] gi|225213674|gb|EEG96028.1| hypothetical protein ROSEINA2194_00051 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 69/209 (33%), Positives = 104/209 (49%), Gaps = 5/209 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + L+ +IGY F LL +ALTHSS ++ ERLEFLGD +L ++ S L+ Sbjct: 3 NFLELQDKIGYEFKQEKLLRQALTHSSFANEKHLRKHSDNERLEFLGDAVLEIVSSDFLY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG+L+ SLV T + RE++L ++ + SI +D +E Sbjct: 63 KAYPDKSEGDLTKLRASLVCEPTLAICTREMELGKYLFLGKGENLTGGRNRNSILSDALE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++I A+YLDGG E A TF+ K+ ++ K D KT LQE + Y++ Sbjct: 123 AVIGAIYLDGGFEHAKTFIHKFILT-DIEHKKLFYDCKTSLQEVVQGHYEEELNYRLISE 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDHD RF+V I G+ +K+ Sbjct: 182 EGPDHDKRFSVEARIGERVIGTGIGHTKK 210 >gi|328885312|emb|CCA58551.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712] Length = 270 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 6/221 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 14 ASSHTLLEGRLGYQLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLY 72 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+L+ ++V++ + V REL+L SFIR+ SI AD +E Sbjct: 73 RTHPDLPEGQLAKLRAAVVNSRALADVGRELELGSFIRLGRGEEGTGGRDKASILADTLE 132 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD G++ A V + + KS D KT LQE A+ PEY + Sbjct: 133 AVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEY-LV 191 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 192 SEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESA 232 >gi|224368198|ref|YP_002602361.1| two domain fusion protein Includes: metal-dependent phosphoesterase / ribonuclease III [Desulfobacterium autotrophicum HRM2] gi|223690914|gb|ACN14197.1| two domain fusion protein Includes: metal-dependent phosphoesterase / ribonuclease III [Desulfobacterium autotrophicum HRM2] Length = 520 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 115/223 (51%), Gaps = 7/223 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 R LEK +G+ FANR LLE AL HSS + Q +RLEF+GD +LGL I +L Sbjct: 292 RLEILEKNLGHTFANRELLENALRHSSYVNELQANQVPDNQRLEFMGDAVLGLTIGQILM 351 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG LS +LVS + +AR++DL FIR+ R S SI AD E Sbjct: 352 EEHPGMNEGSLSKARAALVSEPALASMARQIDLGRFIRLGKGERLSRGSEKNSILADAFE 411 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++AA+YLD G + V + + + + S D K+ LQE+ K P Y + Sbjct: 412 AVMAAIYLDCGFKQTCALVKEQFISQIKLINSAPEIEDFKSMLQEFVQEKGNTPPCYTIH 471 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDHD F++ V+ + + G SK+AAEQ AA LK Sbjct: 472 REFGPDHDKTFSICVKACDIE-SMGSGKSKKAAEQHAAQNALK 513 >gi|158521513|ref|YP_001529383.1| ribonuclease III [Desulfococcus oleovorans Hxd3] gi|158510339|gb|ABW67306.1| Ribonuclease III [Desulfococcus oleovorans Hxd3] Length = 231 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 110/223 (49%), Gaps = 7/223 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 + + LE+ + Y F + LL KAL HSS + E ERLEFLGD L L I LL Sbjct: 1 MNTTLLEQHLVYRFTDTGLLAKALRHSSYVNEQADPAMEDNERLEFLGDAALSLCIGHLL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F EG+LS LV+A + + R ++L ++ + + SI A+ V Sbjct: 61 MARFPELSEGDLSQTRAGLVNAGWLADIGRSMNLGEYVLLGKGEEQTNGRNKDSILANAV 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+L+ A+YLDGG + V ++ AL + R+ K+ LQE A G P Y++ Sbjct: 121 EALLGAIYLDGGFDAVMAVVRHKFENDIEALAALDMNRNYKSLLQELTQATDGKAPTYEI 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +GPDHD F V + A+G +K+ A+Q AA + L Sbjct: 181 IDETGPDHDKTFHCRVSAGDIQ-AEGSGKNKKTAQQDAAHKAL 222 >gi|220927101|ref|YP_002502403.1| ribonuclease III [Methylobacterium nodulans ORS 2060] gi|219951708|gb|ACL62100.1| ribonuclease III [Methylobacterium nodulans ORS 2060] Length = 244 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 94/222 (42%), Positives = 132/222 (59%), Gaps = 1/222 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 STLE++IG+ FA++ LL +ALTH S + + ESY+RLEFLGDR+LGL ++ LF Sbjct: 15 DLSTLEEKIGHRFADQELLVRALTHVSAA-TGPESYQRLEFLGDRVLGLAVADGLFAALP 73 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EG+LS R + LV E+C+ VA D+ +++ + +I ADV E+++ Sbjct: 74 GADEGDLSRRLSGLVRRESCAAVATAWDVGPHLKLGAGEVYGGGRRNPAILADVCEAILG 133 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A++LD G E A T +D+ + G RD K+ LQEWA TP Y V R+GPD Sbjct: 134 AIFLDAGYEAAKTVIDRAFAAGNEVEGTRTRDPKSALQEWAQGLGLPTPTYAVVERAGPD 193 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 H P F + + G+AP G+ SKR AEQ AA +L REG+W Sbjct: 194 HAPIFRIEARVLGVAPGVGVGGSKRLAEQEAARLLLMREGVW 235 >gi|77165916|ref|YP_344441.1| ribonuclease III [Nitrosococcus oceani ATCC 19707] gi|254434280|ref|ZP_05047788.1| ribonuclease III [Nitrosococcus oceani AFC27] gi|90101630|sp|Q3J8D5|RNC_NITOC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|76884230|gb|ABA58911.1| RNAse III [Nitrosococcus oceani ATCC 19707] gi|207090613|gb|EDZ67884.1| ribonuclease III [Nitrosococcus oceani AFC27] Length = 233 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 119/214 (55%), Gaps = 8/214 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L +++GY FA +LL A+TH S + +E+ ERLEFLGD IL LI+ L++ F Sbjct: 5 LERLCRKLGYRFAEPALLRHAITHRSAT---KENNERLEFLGDSILNFLIADFLYSGFPR 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EGELS +LV ET +++AREL++ + + K TSI AD E++I A Sbjct: 62 AQEGELSRLRATLVKGETLAELARELEIGDHLILGLGELKSGGYRRTSILADAFEAVIGA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQRAL----KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YLDGG+E V ++ R ++ +D KT LQE+ A+ P+Y+V+ S Sbjct: 122 VYLDGGLEACRKLVSSLYRDRLETLTNEALLNLKDPKTRLQEYLQARQFPLPDYRVSAVS 181 Query: 182 GPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQV 214 G HD F V ++ P+ G+ S+R AEQ Sbjct: 182 GEAHDQVFQVECTLNNTFPSVIGIGRSRRKAEQD 215 >gi|297191816|ref|ZP_06909214.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486] gi|197722006|gb|EDY65914.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486] Length = 296 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 9 NASSHTLLEGRLGYQLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 67 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SFIR+ SI AD + Sbjct: 68 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 127 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS D KT LQE A+ PEY V Sbjct: 128 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLV 187 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 188 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 230 >gi|153954021|ref|YP_001394786.1| ribonuclease III [Clostridium kluyveri DSM 555] gi|219854635|ref|YP_002471757.1| hypothetical protein CKR_1292 [Clostridium kluyveri NBRC 12016] gi|189043304|sp|A5N807|RNC_CLOK5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807246|sp|B9E1G8|RNC_CLOK1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|146346902|gb|EDK33438.1| Hypothetical protein CKL_1396 [Clostridium kluyveri DSM 555] gi|219568359|dbj|BAH06343.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 244 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 5/228 (2%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57 M + + +EK + +F ++ L++ ALTHSS ++ + + ER+EFLGD +L L IS Sbjct: 1 MEKVNFFEEVEKTLNISFNDKELIDTALTHSSYANGKKGVKFNERMEFLGDSVLQLCISE 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF + S EGEL+ + + +V + +VA++ ++ +I++S TSI A+ Sbjct: 61 YLFLIYKSKSEGELTKKRSLIVCENSLYEVAKKWNIGKYIKMSKGEEITGGRERTSILAN 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEY 175 VE++IAA+Y+D G + F+ +K K+ + D KT LQE + EY Sbjct: 121 CVEAIIAAIYIDSGYKKTKQFIIDNFKDIIEKAIKNQIVLDYKTNLQEIVQQDGDIHIEY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GP H +F V ++ G+ +K+ +EQ AA + LK+ Sbjct: 181 MLIKYEGPPHRRKFYTKVCVANNVMGSGVGYTKKESEQNAAQDALKKL 228 >gi|257784655|ref|YP_003179872.1| ribonuclease III [Atopobium parvulum DSM 20469] gi|257473162|gb|ACV51281.1| ribonuclease III [Atopobium parvulum DSM 20469] Length = 243 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 115/225 (51%), Gaps = 3/225 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFN 61 R + E G+ F N+ L+E ALTH S SYERLEFLGD ILG +I+T LF Sbjct: 5 ERVAAAEAICGHTFINKDLIEAALTHPSAVEGKPVSASYERLEFLGDSILGAIIATELFE 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG+L+ SLVS T S V+ L ++ I + + M S +V ES Sbjct: 65 RYPDMDEGQLTRLKISLVSGHTLSIVSDTLGVSPLIVMGISEKGTGKRGMKSALENVYES 124 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFR 180 ++ ALYLD G E FV + + R K+ LQE A+ TPEYK+ Sbjct: 125 IVGALYLDAGFEPTRDFVIRTLGPHISPTLAVRSVSPKSRLQEAVQAQGKATPEYKLIGE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 SGP H P FT VV + GL +G SK+AAE AA + L R G+ Sbjct: 185 SGPAHTPTFTAVVFVDGLKVGRGQGPSKKAAESEAAQDALVRLGV 229 >gi|261838098|gb|ACX97864.1| ribonuclease III [Helicobacter pylori 51] Length = 239 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 4/221 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 17 SYATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFY 74 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 75 QYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEALMA 134 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YL+ G+ + + L D KT LQE A+F V P Y++ G Sbjct: 135 GVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKG 194 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH F + + I A SK+ AEQ A + L++ Sbjct: 195 PDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 235 >gi|254383289|ref|ZP_04998642.1| ribonuclease 3 [Streptomyces sp. Mg1] gi|194342187|gb|EDX23153.1| ribonuclease 3 [Streptomyces sp. Mg1] Length = 277 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 16 AASSHTLLEGRLGYRLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SFIR+ SI AD + Sbjct: 75 YTTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS D KT LQE A+ PEY V Sbjct: 135 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLV 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 237 >gi|254428849|ref|ZP_05042556.1| ribonuclease III [Alcanivorax sp. DG881] gi|196195018|gb|EDX89977.1| ribonuclease III [Alcanivorax sp. DG881] Length = 228 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 85/220 (38%), Positives = 112/220 (50%), Gaps = 5/220 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L R+GY F + SLLE ALTH S+S +YERLEFLGD LG +IS LF F Sbjct: 4 DLNRLMARLGYQFQDISLLELALTHRSVSRH--RNYERLEFLGDAQLGQIISVALFEQFP 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EG+L+ SLV +T + VAREL L ++ + K SI AD +ES+I Sbjct: 62 EAAEGQLTRMRASLVRGQTLALVARELGLGEYLVLGGGELKSGGFRRDSILADALESIIG 121 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+ LDGG V ++ R A+ ++DAKT LQEW A+ P Y+VT G Sbjct: 122 AMLLDGGESRCREVVLCWFAPRLDAISPQSAQKDAKTRLQEWLQARKFELPTYEVTQVEG 181 Query: 183 PDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLK 221 F V + S+R AEQ AA+ L+ Sbjct: 182 LAPKQTFDVQCSLDQVQQIFIAQGASRRKAEQEAASLALE 221 >gi|297379862|gb|ADI34749.1| ribonuclease III [Helicobacter pylori v225d] Length = 238 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ Sbjct: 13 TNSSYATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYH 70 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+LS S+VS +++A+ + L ++RVSS SI + E+ Sbjct: 71 KFYQYDEGKLSKLRASIVSTHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEA 130 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+A +YL+ G+ + + L D KT LQE A+F V P Y++ Sbjct: 131 LMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLK 190 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 191 EKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 234 >gi|319787580|ref|YP_004147055.1| ribonuclease III [Pseudoxanthomonas suwonensis 11-1] gi|317466092|gb|ADV27824.1| ribonuclease III [Pseudoxanthomonas suwonensis 11-1] Length = 230 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 76/216 (35%), Positives = 113/216 (52%), Gaps = 6/216 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + RIG+AFA+ SLL++ALTH S + ERLEFLGD ++ L+ + L+ Sbjct: 1 MARNDRTVVRDRIGHAFADPSLLQQALTHRSAGSPH---NERLEFLGDAVVNLIAAEALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + A EG L+ LV + + +AREL L + + K SI AD +E Sbjct: 58 QRWPKADEGVLTRARAELVREASLAVIARELQLGERLTLGPGELKSGGFRRDSILADALE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++AA+YLD G + V +++Q AL G+ +DAKT LQEW + P Y++ Sbjct: 118 AVVAAIYLDAGYDACRAHVLPWFEQSIAALPVGQPGKDAKTRLQEWLQGRGKPLPAYELV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213 SG DH F +S A+G S+R AEQ Sbjct: 178 SESGEDHAKVFLARCTLSEPPASAEGQGTSRRLAEQ 213 >gi|225571976|ref|ZP_03780840.1| hypothetical protein RUMHYD_00270 [Blautia hydrogenotrophica DSM 10507] gi|225040509|gb|EEG50755.1| hypothetical protein RUMHYD_00270 [Blautia hydrogenotrophica DSM 10507] Length = 244 Score = 248 bits (633), Expect = 7e-64, Method: Composition-based stats. Identities = 68/208 (32%), Positives = 107/208 (51%), Gaps = 5/208 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 LEK +GY F + +LL++A+THSS S+ ERLEFLGD +L ++ S L+ Sbjct: 12 LKELEKELGYQFRDINLLKQAVTHSSYSNEKNMGKLGCNERLEFLGDAVLEVISSEFLYQ 71 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +EGEL+ + S+V T + ARE+ L +++ + SI +D +E+ Sbjct: 72 KFPILQEGELTKKRASMVCEPTLALCAREIRLDNYLLLGHGEENTGGRKRDSIVSDALEA 131 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +I A+YLDGG+ A F+ K+ ++ + D+KT LQE Y++ Sbjct: 132 VIGAIYLDGGLASAKEFILKHVL-NDMEHKQLFYDSKTILQEIVQEHGNNPVSYQLIRED 190 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDH+ FTV V + G +K+ Sbjct: 191 GPDHNKIFTVEVRVKQEVLGVGQGHTKK 218 >gi|208434584|ref|YP_002266250.1| ribonuclease III [Helicobacter pylori G27] gi|226741372|sp|B5Z735|RNC_HELPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|208432513|gb|ACI27384.1| ribonuclease III [Helicobacter pylori G27] Length = 239 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 115/220 (52%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS ++VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRAAIVSAHGFTKLAKAIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + L D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH F + + I A SK+ AEQ A L++ Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQKL 235 >gi|82702876|ref|YP_412442.1| ribonuclease III [Nitrosospira multiformis ATCC 25196] gi|82410941|gb|ABB75050.1| RNAse III [Nitrosospira multiformis ATCC 25196] Length = 230 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 75/220 (34%), Positives = 111/220 (50%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L +++GY F LL +ALTH S S + ERLEFLGD +L ++ L+F+HF Sbjct: 11 AALCRKLGYTFRRPELLRQALTHRSHSIPH---NERLEFLGDAVLNCAVAGLIFHHFPDL 67 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG LS +LV+ + +++A+ L+L IR K SI AD +E++I A+ Sbjct: 68 SEGSLSRIRANLVNQKMLAELAQTLELGKLIRFGEGELKSGGDKRPSILADALEAVIGAI 127 Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G E A V+ + L + +D KT LQE+ ++ P Y V G Sbjct: 128 YLDAGFEQAEKTVENLFIPSLGELNTHALGKDPKTLLQEYLQSRKLALPRYAVVATRGEA 187 Query: 185 HDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 H +F V IS G S+R+AEQ AA + ++ Sbjct: 188 HQQQFQVECVISRPQIRTLGEGTSRRSAEQHAARQAYEQL 227 >gi|308063545|gb|ADO05432.1| ribonuclease III [Helicobacter pylori Sat464] Length = 238 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 116/220 (52%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 17 YATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 74 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 75 YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 134 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + L D KT LQE A+F V P Y++ GP Sbjct: 135 VYLEAGLAKVQKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGP 194 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH F + + I A SK+ AEQ A + L++ Sbjct: 195 DHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 234 >gi|91201952|emb|CAJ75012.1| similar to ribonuclease III [Candidatus Kuenenia stuttgartiensis] Length = 236 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 87/222 (39%), Positives = 128/222 (57%), Gaps = 3/222 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + ++ + IGY+F LLEKALTH+S S ERLEFLGD +LG++IS L+ Sbjct: 9 NPEKFIACQNIIGYSFKKMLLLEKALTHTSCRVENNFSNERLEFLGDAVLGMIISDYLYK 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EGEL+ + +VS T ++V E L F+ V L D F S+ A+V E+ Sbjct: 69 TMPHYSEGELTNVKSVVVSQSTLAKVGMEAGLKEFLLVGRGL-NDRDLFPKSLLANVFEA 127 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LIAA+Y+DGGIE A F +Y K+ + + +++ K+ LQ+++ ++G+TP Y++ Sbjct: 128 LIAAIYIDGGIEAASEFTLRYLKKEIDLVCKNQHKKNYKSILQQYSQKEYGITPTYRLLQ 187 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + GPDH F +VV I G +G SK+ AEQ AA E LK Sbjct: 188 QIGPDHGKSFEIVVSIKGSEYGRGWGKSKKEAEQSAAKEALK 229 >gi|255321781|ref|ZP_05362936.1| ribonuclease III [Campylobacter showae RM3277] gi|255301261|gb|EET80523.1| ribonuclease III [Campylobacter showae RM3277] Length = 222 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 116/218 (53%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++GY F + LL+ ALTH S+ + ERLEFLGD ++ L+I LF+ F E Sbjct: 4 LEEKLGYKFKDEKLLKTALTHKSV--KGGANNERLEFLGDAVMDLVIGDYLFHKFSRLSE 61 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV+ ++ +++A+ L+L I +S + SI +D E+L+ A+YL Sbjct: 62 GDLSKLRAALVNEKSFAELAKYLNLGQLINISPAEEHNGGRAKASILSDAFEALMGAIYL 121 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + G + K +++ + + +D KT LQE A+F P+Y + GPDH Sbjct: 122 ESGFDAVRAASLKAFERCYPDINFDRMVKDYKTALQELTQARFAQIPKYVLVGSKGPDHK 181 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + + ++ ++ SK+ AEQ AA L+ G Sbjct: 182 KEFEIALMLNEREISRAAGKSKKEAEQKAAKTALEILG 219 >gi|328957311|ref|YP_004374697.1| ribonuclease III [Carnobacterium sp. 17-4] gi|328673635|gb|AEB29681.1| ribonuclease III [Carnobacterium sp. 17-4] Length = 245 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L+ + F + S LE+A THSS + ++ + ER+EFLGD +L L +S Sbjct: 15 MDDAFLTQLKTKFDLVFHDLSYLEEAFTHSSYVNEHRNLELKDNERIEFLGDAVLELTVS 74 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + + EG+L+ ++V + SQ A+E + FIR+ + ++ Sbjct: 75 RFLYELYPNLPEGKLTRLRATIVCEASLSQFAKEYEFDQFIRLGRGEERMNGRKRPALLC 134 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ ES I ALYLD GI+ +F+D+ + +KSG F D KT LQE+ K + + Sbjct: 135 DLFESFIGALYLDQGIDSVLSFLDQTIFPK-IKSGAFSHVMDHKTNLQEFLQQKGEIGID 193 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y++ GP H F V V G QG +K+AAEQVAA L Sbjct: 194 YQLVDEIGPAHQKAFVVEVLAEGQVLGQGQGKTKKAAEQVAAENAL 239 >gi|169632753|ref|YP_001706489.1| ribonuclease III [Acinetobacter baumannii SDF] gi|238688259|sp|B0VTM5|RNC_ACIBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|169151545|emb|CAP00312.1| ribonuclease III, ds RNA [Acinetobacter baumannii] Length = 230 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 120/228 (52%), Gaps = 9/228 (3%) Query: 1 MSALRYS----TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56 M+ ++ L RIGY F LL+ ALTH S+SH Y +YERLEFLGD +LG++I+ Sbjct: 1 MTKHQFKLSDPRLLSRIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIA 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L++ + EG L+ +LV E ++A +L L+ + +S+ K SI A Sbjct: 59 NYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILA 118 Query: 117 DVVESLIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTP 173 D VE++I A+YLD + + V K++ ++ +D K+ LQE+ A+ P Sbjct: 119 DTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLP 178 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y+V G F V + GL+ G S+R AEQ AAAE+LK Sbjct: 179 VYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGASRRFAEQAAAAEILK 226 >gi|205355648|ref|ZP_03222418.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421] gi|205346425|gb|EDZ33058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421] Length = 225 Score = 247 bits (632), Expect = 8e-64, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF+ F Sbjct: 4 NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I Sbjct: 62 KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDTLEAIIG 121 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++L+ G E A T + ++ + + +D KT+LQE K G TP+Y+ G Sbjct: 122 AIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 181 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 182 PDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 223 >gi|323137544|ref|ZP_08072621.1| ribonuclease III [Methylocystis sp. ATCC 49242] gi|322397170|gb|EFX99694.1| ribonuclease III [Methylocystis sp. ATCC 49242] Length = 234 Score = 247 bits (632), Expect = 8e-64, Method: Composition-based stats. Identities = 89/208 (42%), Positives = 126/208 (60%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + + + LE+ +G+ FA++SLL ALTH S S ESYERLEFLGDR+LGL ++ +L+ Sbjct: 4 AKVDLAALEESVGHRFADQSLLRWALTHVSASSQRPESYERLEFLGDRVLGLAVAHMLYE 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EGELS R +LV ETC++VA + ++R+ + +I DV E+ Sbjct: 64 AFPGESEGELSRRLAALVRKETCAEVAEIWGVGPYMRLGEGEAQTGGRKKRAILGDVCEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +I A++LDGG + AG V + + L++G+ RDAKT LQEWA A+ P Y++ RS Sbjct: 124 IIGAVFLDGGADAAGRVVRAGFGPKMLEAGRDLRDAKTALQEWAQARRLPPPRYRLIARS 183 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDH P F + V+I G A G SKR Sbjct: 184 GPDHAPSFEMAVDIEGFESAGGAGASKR 211 >gi|302537165|ref|ZP_07289507.1| ribonuclease III [Streptomyces sp. C] gi|302446060|gb|EFL17876.1| ribonuclease III [Streptomyces sp. C] Length = 273 Score = 247 bits (632), Expect = 8e-64, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 123/230 (53%), Gaps = 8/230 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 16 AASSHTLLEGRLGYQLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SFIR+ SI AD + Sbjct: 75 YTTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS D KT LQE A+ PEY V Sbjct: 135 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLV 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 T +GPDH+ FT + G++ G SK+ AEQ AA + GI T Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR--GIRT 241 >gi|182679393|ref|YP_001833539.1| ribonuclease III [Beijerinckia indica subsp. indica ATCC 9039] gi|182635276|gb|ACB96050.1| Ribonuclease III [Beijerinckia indica subsp. indica ATCC 9039] Length = 235 Score = 247 bits (632), Expect = 8e-64, Method: Composition-based stats. Identities = 102/228 (44%), Positives = 137/228 (60%), Gaps = 4/228 (1%) Query: 1 MSALR--YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLIST 57 MS + LE RIG+ F LL ALTH S++ + +E+Y+RLEFLGDR+LGL+I+ Sbjct: 1 MSRFKQDLEPLETRIGHRFVEADLLTTALTHVSVTVGARRETYQRLEFLGDRVLGLVIAE 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +L+ F A+EGELS R LV E+C++VA E + F+R+ R + + +I D Sbjct: 61 MLYATFPEAEEGELSRRLADLVRKESCAEVALEWGVGPFVRLGESER-QIGTTKKAILGD 119 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 V ES+I A++LD G VA + K + R + RDAKT LQEWA ++ TP Y+ Sbjct: 120 VCESIIGAVFLDAGYTVAQQVIVKAFDARMRSPRRPLRDAKTVLQEWAQSRGHPTPLYRE 179 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 R GPDH P FT+ V I G A AQ SKR AEQ AAA ++REGI Sbjct: 180 ICRCGPDHAPEFTISVCIPGYADAQAKGPSKRLAEQAAAAHFIEREGI 227 >gi|313892546|ref|ZP_07826133.1| ribonuclease III [Dialister microaerophilus UPII 345-E] gi|313118943|gb|EFR42148.1| ribonuclease III [Dialister microaerophilus UPII 345-E] Length = 239 Score = 247 bits (632), Expect = 8e-64, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 112/231 (48%), Gaps = 9/231 (3%) Query: 1 MSALRYSTLEKRIG---YAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGL 53 M R LE+ I N LL ALTH+S ++ ++++ ERLEFLGD +L L Sbjct: 1 MHKNRIKELEEFIKENEIPIKNHELLNIALTHTSYANEHKKNKEHDNERLEFLGDAVLDL 60 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 ++ LF + EGEL+ S V C++++ L++ ++ + K S Sbjct: 61 IVGEYLFRKYPLWSEGELTKAKASAVCKPACAEISTRLNVGKYLLLGKGEEKSGGRTRVS 120 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGV 171 I D ESLI A+YLD G EV FV K+ ++ + G + +D KT+LQE V Sbjct: 121 ILGDAFESLIGAIYLDIGYEVTFDFVIKHLEKFLDLIMQGDYDKDYKTDLQEILQQNGDV 180 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y V GPDHD + V G G+ SK+ A Q AA E ++R Sbjct: 181 EICYNVIHDEGPDHDKTIWMSVTADGKYLGSGIGKSKKQAAQRAAKEAIER 231 >gi|210134869|ref|YP_002301308.1| ribonuclease III [Helicobacter pylori P12] gi|226741371|sp|B6JLQ0|RNC_HELP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|210132837|gb|ACJ07828.1| ribonuclease III [Helicobacter pylori P12] Length = 239 Score = 247 bits (632), Expect = 9e-64, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + L D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH F + + I A SK+ AEQ A + L++ Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKL 235 >gi|148925776|ref|ZP_01809464.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486] gi|145845786|gb|EDK22877.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486] Length = 229 Score = 247 bits (632), Expect = 9e-64, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF+ F Sbjct: 8 NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 65 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I Sbjct: 66 KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIG 125 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++L+ G E A T + ++ + + +D KT+LQE K G TP+Y+ G Sbjct: 126 AIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 185 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 186 PDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 227 >gi|83748443|ref|ZP_00945465.1| Ribonuclease III [Ralstonia solanacearum UW551] gi|207725215|ref|YP_002255611.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum MolK2] gi|207743590|ref|YP_002259982.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum IPO1609] gi|83724854|gb|EAP72010.1| Ribonuclease III [Ralstonia solanacearum UW551] gi|206590449|emb|CAQ37411.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum MolK2] gi|206594989|emb|CAQ61916.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum IPO1609] Length = 256 Score = 247 bits (632), Expect = 9e-64, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 109/221 (49%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S ERLEFLGD IL ++ +L+ F Sbjct: 1 MSLDALQQRLGYRFSKPELLQQALTHRS---HSAMHNERLEFLGDSILNCAVADMLYGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L +R+ K SI AD +E++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H+ +F V I L G S+RAAEQ AA L+ Sbjct: 178 GAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQSAAKLALE 218 >gi|270290359|ref|ZP_06196584.1| ribonuclease III [Pediococcus acidilactici 7_4] gi|270281140|gb|EFA26973.1| ribonuclease III [Pediococcus acidilactici 7_4] Length = 232 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 110/221 (49%), Gaps = 7/221 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L + F LL++A T +S + + + YER+EFLGD +L L++S L+ + Sbjct: 9 LSEMFDIHFTKHELLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVLQLVVSEYLYKRYP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G+L+ ++V + S A+E +IR+ K S+ D+ ES I Sbjct: 69 EMPQGKLTRLRAAMVCEASFSDFAKECHFDRYIRLGKGEEKSGARQRPSLLCDIFESFIG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G + FV + + L G+F D K+ELQE V Y++ +G Sbjct: 129 ALYLDQGRQAVEKFVRQVIFPK-LDEGRFDHIIDHKSELQELLQRNGEVEINYELISETG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PD+D FTV V + A+G SK+AAEQ AA + L++ Sbjct: 188 PDNDLVFTVQVSAANQVLAKGSGHSKKAAEQNAANKALQKL 228 >gi|226328142|ref|ZP_03803660.1| hypothetical protein PROPEN_02033 [Proteus penneri ATCC 35198] gi|225203846|gb|EEG86200.1| hypothetical protein PROPEN_02033 [Proteus penneri ATCC 35198] Length = 227 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 76/214 (35%), Positives = 114/214 (53%), Gaps = 7/214 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L + L+K++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNTLLVNQLQKKLGYTFTQNELLLQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVA-GTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +LI A++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGAIFLDSDIQNIEKKIILNWYENRLAEISPGDKQKDPKTRLQEYLQGRHLPLPSYNV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210 G HD FT+ +ISG+ P +GM S+R Sbjct: 178 VQVRGEAHDQEFTIHCQISGIEQPVKGMGTSRRK 211 >gi|300691972|ref|YP_003752967.1| ribonuclease III (RNase III) [Ralstonia solanacearum PSI07] gi|299079032|emb|CBJ51694.1| Ribonuclease III (RNase III) [Ralstonia solanacearum PSI07] Length = 256 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 109/221 (49%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S ERLEFLGD IL ++ +L+ F Sbjct: 1 MSLEALQQRLGYRFSKPELLQQALTHRS---HSAMHNERLEFLGDSILNCAVADMLYGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L +R+ K SI AD +E++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H+ +F V I L G S+RAAEQ AA L+ Sbjct: 178 GAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQSAAKLALE 218 >gi|291546254|emb|CBL19362.1| RNAse III [Ruminococcus sp. SR1/5] Length = 226 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 78/209 (37%), Positives = 110/209 (52%), Gaps = 5/209 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 LE+ IGY F +SLLE+A+THSS ++ ERLEFLGD +L L+ S L+ Sbjct: 4 NLKKLEQTIGYQFTAKSLLEQAMTHSSYANEKHLGKLGCNERLEFLGDAVLELISSDFLY 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + +EGEL+ + S+V ++ + ARE L FI + SI +D +E Sbjct: 64 KKFRNNQEGELTKKRASMVCEKSLAYCAREFGLPEFILLGRGEEMMGGRKRDSIVSDGLE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLI A+YLDGG E A FV K+ L+ + D+KT LQE EY++ Sbjct: 124 SLIGAMYLDGGFEPAQAFVMKFIL-NDLEDKRIFYDSKTVLQEMVQEGGNHPVEYRLLKE 182 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDH FTV I+G + G+ +K+ Sbjct: 183 EGPDHSKSFTVEALINGKSMGTGIGHTKK 211 >gi|295094866|emb|CBK83957.1| RNAse III [Coprococcus sp. ART55/1] Length = 229 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 Y LEKRIGY F + LL ALTH+S ++ + ESYERLEFLGD IL ++S LF Sbjct: 4 DYGELEKRIGYEFKDIRLLITALTHTSFANELKVNKTESYERLEFLGDAILEYIVSDYLF 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +EG+L+ SLV T SQ++ L F+ +S + SI D+ E Sbjct: 64 RKKREYEEGKLTKLRASLVCEFTLSQISESLGYGKFVLLSKGEAQTGGRTRKSILCDLFE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 S++ A+YLDGG++VA FV ++ +++ DAK+ LQE+ +Y++ Sbjct: 124 SVLGAMYLDGGMDVAKKFVHQFLLD-DVETKSLFYDAKSTLQEFCQKNGKEL-KYELIEE 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP+H+ F I G A A+G +++ +EQ+AA + L + Sbjct: 182 KGPEHNKIFVSDALIDGQATARGEGSNRKNSEQMAAYKTLLQL 224 >gi|302383079|ref|YP_003818902.1| ribonuclease III [Brevundimonas subvibrioides ATCC 15264] gi|302193707|gb|ADL01279.1| ribonuclease III [Brevundimonas subvibrioides ATCC 15264] Length = 237 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 89/236 (37%), Positives = 130/236 (55%), Gaps = 11/236 (4%) Query: 1 MSALR---YSTLEKRIGYAFANRSLLEKALTHSS-------ISHSYQESYERLEFLGDRI 50 M+ +R + L +R+G+ F + +LLE+ALTHSS + ERLEFLGDR+ Sbjct: 1 MANIRAEAVTALVQRLGHDFRDPALLERALTHSSVGEGADKAAGKPARHNERLEFLGDRV 60 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 LGLL++ L + F +A EGELS R ++LV C +V L + +R+S K Sbjct: 61 LGLLVAQRLHHDFPAADEGELSSRLHALVDKHACGRVGEALKIGDALRLSPGETKTGGRR 120 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKF 169 + AD VE+L+AA++LDGG+E A D+ W + K+ LQEWA Sbjct: 121 KEGVVADAVEALLAAVFLDGGLEAARAVFDRAWAHELASPAPRALNNPKSALQEWAQGHG 180 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P Y+V ++G DH P FTV V I G+ P + S++ AE+ AA +L+REG+ Sbjct: 181 RPLPSYRVASQTGSDHAPTFTVEVSIEGVEPLTAVGRSRQDAEKAAATALLQREGV 236 >gi|226313209|ref|YP_002773103.1| ribonuclease III [Brevibacillus brevis NBRC 100599] gi|226096157|dbj|BAH44599.1| ribonuclease III [Brevibacillus brevis NBRC 100599] Length = 246 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 5/211 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 + ++ L++ IG+ F + S+L +A THSS + + ERLEFLGD +L L +S L Sbjct: 19 MNFAQLQETIGFRFRDESVLRQAFTHSSYVNEQRGKRISDNERLEFLGDAVLELTVSQFL 78 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F EGE++ ++V + + A L+ + + ++ ADV Sbjct: 79 YKTFPKMSEGEMTKLRAAIVCEPSLVKFAELLNFGDLVLLGKGEELTGGRQRPALLADVF 138 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVT 178 E+ + ALYLD G+E +F++KY R K + D K++LQE+ Y++ Sbjct: 139 EAFVGALYLDQGLEAVFSFMEKYVYPRIDKGEFAQVTDFKSQLQEFVQQDNLGDIHYRIV 198 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ + G SK+ Sbjct: 199 EEKGPAHNREFVSEVLLNNRSLGIGSGRSKK 229 >gi|330964520|gb|EGH64780.1| ribonuclease III [Pseudomonas syringae pv. actinidiae str. M302091] Length = 227 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 6/214 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 2 SVSLSRLERQLGYTFKDQELMILALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+L Sbjct: 59 FPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLD G+E A V + +L +D KT LQE+ ++ P Y+V Sbjct: 119 IGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVDI 178 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V EI+ L ++G S+R AEQ Sbjct: 179 QGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212 >gi|257462242|ref|ZP_05626659.1| ribonuclease III [Fusobacterium sp. D12] Length = 232 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 7/227 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 LE I Y F +++LL+ AL H S + ++ + ERLE LGD +LGL+++ L+ Sbjct: 4 NLVDLEHNINYYFNDKNLLKNALIHRSFGNEHRTYKNINNERLELLGDAVLGLVVAEYLY 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + KEG L+ + VS S V+R+L + ++ +S SI D E Sbjct: 64 QKYPKEKEGVLAKIKSMAVSEPVLSGVSRKLHIGDYLLLSKGEIVTGGRDRNSILGDAFE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+YLD G A +V + K+ F D KT LQE KF P+Y + Sbjct: 124 AILGAIYLDSGFFAAKEYVLFHLKEIIDHIDDFEEILDFKTILQEHCQKKFKEIPKYTLL 183 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDH F + V+I A+ +K+ AEQ AA ++ K G+ Sbjct: 184 REEGPDHRKLFEMQVQIQDKV-ARAKGNNKKIAEQKAAKKLCKEMGV 229 >gi|118444155|ref|YP_878292.1| ribonuclease III [Clostridium novyi NT] gi|118134611|gb|ABK61655.1| ribonuclease III [Clostridium novyi NT] Length = 237 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 4/223 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLF 60 + + +E ++ F + ++L+ ALTHSS + + S ERLEFLGD IL L IS LL+ Sbjct: 6 NIILNEVENKLKVKFNDINILDTALTHSSFINENKNINSNERLEFLGDSILQLCISELLY 65 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N ++ EG L+ + +V + +VA++ ++ +I +S SI +D VE Sbjct: 66 NKYNDEPEGFLTKKRALIVCGNSLHEVAKKWNIGKYINMSKGEEMTGGRTRISILSDCVE 125 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IA++YLD G EVA F+ + + + K+ + D KT+LQE EY + Sbjct: 126 AIIASIYLDQGYEVAKNFIIENFNEIIQKAHSNEIILDYKTKLQETIQKFGEYNIEYTLV 185 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H +F V I L G SK+ +EQ AA E LK Sbjct: 186 SFEGPPHRRKFVTEVSIDSLVKGVGEGYSKKESEQNAAKEALK 228 >gi|154707005|ref|YP_001423899.1| ribonuclease III [Coxiella burnetii Dugway 5J108-111] gi|165919331|ref|ZP_02219417.1| ribonuclease III [Coxiella burnetii RSA 334] gi|189043305|sp|A9KFA0|RNC_COXBN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|154356291|gb|ABS77753.1| ribonuclease III [Coxiella burnetii Dugway 5J108-111] gi|165916991|gb|EDR35595.1| ribonuclease III [Coxiella burnetii RSA 334] Length = 233 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 125/219 (57%), Gaps = 7/219 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + L +R+G+ F N LL+ ALTH S S ++ ERLEFLGD +LG +I++ L+ Sbjct: 4 LNKLMERLGHQFNNLELLKIALTHRS---SGADNNERLEFLGDSVLGFIIASELYQRRPQ 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EG+LS S+V+ + +Q++ +L + ++++ +K SI AD +E+++ A Sbjct: 61 AREGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGA 120 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +Y+D G+E V ++ +R K ++DAK+ LQEW A+ P Y+V +G Sbjct: 121 IYIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEV-KITGE 179 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 H FTV + GL +G++ ++R AEQ+AA L+ Sbjct: 180 AHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218 >gi|189219126|ref|YP_001939767.1| Ribonuclease III [Methylacidiphilum infernorum V4] gi|189185984|gb|ACD83169.1| Ribonuclease III [Methylacidiphilum infernorum V4] Length = 247 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 10/230 (4%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLL 59 ++ LEK++GYAF N LLE+ALTH S + ++RLEFLGD +LGL ++ L Sbjct: 1 MQLEELEKKMGYAFKNPQLLEEALTHPSFFVESIRVNKGDFQRLEFLGDAVLGLAVTEKL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F S EG+L+ LVS + +A L++ ++R+ K+ S A+ + Sbjct: 61 FQLFPSFDEGKLTKLRARLVSRKNLCSLASLLEIGKYLRLGKGEEKNQGRTKPSNLANAL 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR------DAKTELQEWAHAKFGVTP 173 ES+I ALYLDGG + A +F+ + + ++ K ++K LQE+ K P Sbjct: 121 ESVIGALYLDGGWDRAKSFIFELFNPLFMELEKDPMRFVEHENSKGLLQEFLQKKGTELP 180 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y++ SG H+ + V V +G SK+ AE AA E ++ Sbjct: 181 IYRIVLESGEAHNKWYEVEVSWKNQVLGKGSGKSKKEAELRAAKEAFEKL 230 >gi|171057289|ref|YP_001789638.1| ribonuclease III [Leptothrix cholodnii SP-6] gi|170774734|gb|ACB32873.1| Ribonuclease III [Leptothrix cholodnii SP-6] Length = 228 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS TL+ R+G+ F ++SLL +A++H S + ERLEFLGD +L + +S LLF Sbjct: 1 MSTYPLDTLQARLGHVFRDQSLLLRAVSHRS---HGADHNERLEFLGDAVLNMTVSDLLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + FD + EG+L+ LV + ++A L L + +R+S + + SI AD +E Sbjct: 58 DQFDDSPEGDLTRVRAHLVRQDMLHRLALSLQLPAVLRLSDGEARAGGAQRPSILADAME 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+Y D G E A V + ++ + + + +DAKT+LQEW A+ PEY++ Sbjct: 118 AVIGAVYRDAGYEAAQALVRRLFEPLVSETVTQAWAKDAKTQLQEWLQARRQSVPEYRIE 177 Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 G HD F VV ++G A+G S+RAAEQ AA VL++ Sbjct: 178 TTRGRAHDQTFVVVCSVAGPGIEARGEGRSRRAAEQEAARLVLEQL 223 >gi|153208682|ref|ZP_01946929.1| ribonuclease III [Coxiella burnetii 'MSU Goat Q177'] gi|212219222|ref|YP_002306009.1| ribonuclease III [Coxiella burnetii CbuK_Q154] gi|226741367|sp|B6J4J9|RNC_COXB1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|120575793|gb|EAX32417.1| ribonuclease III [Coxiella burnetii 'MSU Goat Q177'] gi|212013484|gb|ACJ20864.1| ribonuclease III [Coxiella burnetii CbuK_Q154] Length = 233 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 125/219 (57%), Gaps = 7/219 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + L +R+G+ F N LL+ ALTH S S ++ ERLEFLGD +LG +I++ L+ Sbjct: 4 LNKLMERLGHQFNNLELLKIALTHRS---SGADNNERLEFLGDSVLGFIIASELYQRRPQ 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EG+LS S+V+ + +Q++ +L + ++++ +K SI AD +E+++ A Sbjct: 61 AREGDLSRMRASMVNGDELAQMSIKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGA 120 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +Y+D G+E V ++ +R K ++DAK+ LQEW A+ P Y+V +G Sbjct: 121 IYIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEV-KITGE 179 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 H FTV + GL +G++ ++R AEQ+AA L+ Sbjct: 180 AHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218 >gi|57238646|ref|YP_179777.1| ribonuclease III [Campylobacter jejuni RM1221] gi|81353160|sp|Q5HSF8|RNC_CAMJR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|57167450|gb|AAW36229.1| ribonuclease III [Campylobacter jejuni RM1221] gi|315059085|gb|ADT73414.1| Ribonuclease III [Campylobacter jejuni subsp. jejuni S3] Length = 224 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 4/222 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF+ F Sbjct: 3 NIEKLERSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I Sbjct: 61 KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGREKPSILSDALEAIIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++L+ G E T + ++ + + +D KT+LQE K G TP+Y+ G Sbjct: 121 AIHLEAGFEFTKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 181 PDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222 >gi|153951733|ref|YP_001398912.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97] gi|189043301|sp|A7H5Y2|RNC_CAMJD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|152939179|gb|ABS43920.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97] Length = 225 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF+ F Sbjct: 3 NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFT 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I Sbjct: 61 KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++L+ G E A T + ++ + + +D KT+LQE K G TP+Y+ G Sbjct: 121 AIHLEAGFEFAKTIALRLMEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 181 PDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222 >gi|300113378|ref|YP_003759953.1| ribonuclease III [Nitrosococcus watsonii C-113] gi|299539315|gb|ADJ27632.1| ribonuclease III [Nitrosococcus watsonii C-113] Length = 233 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 78/215 (36%), Positives = 117/215 (54%), Gaps = 8/215 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L +++GY FA +LL A+TH S + +E+ ERLEFLGD IL LI+ L++ F Sbjct: 4 DLGRLCQKLGYQFAEPALLRHAITHRSAA---KENNERLEFLGDSILNFLIADFLYSGFP 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A+EG+LS +LV ET +++AREL++ + + K TSI AD E++I Sbjct: 61 KAQEGKLSRLRATLVKGETLAELARELEIGDHLILGLGELKSGGYRRTSILADAFEAVIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK----FRRDAKTELQEWAHAKFGVTPEYKVTFR 180 A+YLDGG+E V ++ R +D KT LQE+ A+ P+Y+V+ Sbjct: 121 AVYLDGGLEACRQLVSSLYRDRLETLTDEVLLNLKDPKTRLQEYLQARQFPLPDYRVSAV 180 Query: 181 SGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQV 214 +G HD F V ++ P+ G+ S+R AEQ Sbjct: 181 NGEAHDQVFQVECTLNNTFPSVIGIGRSRRKAEQD 215 >gi|296136816|ref|YP_003644058.1| ribonuclease III [Thiomonas intermedia K12] gi|295796938|gb|ADG31728.1| ribonuclease III [Thiomonas intermedia K12] Length = 276 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 6/221 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LE R+GY F +R L E+ALTH S + ERLEFLGD +L L + L++ Sbjct: 3 TALETRLGYVFRDRKLFERALTHRSFG---ADHNERLEFLGDSVLNLSAAAWLYHQAARQ 59 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS +LV AE ++VAR +DL F+R+ + + SI AD VE+L+ A+ Sbjct: 60 DEGQLSRLRAALVRAEALAEVARAIDLGRFLRLGEGELQSGGAQRESILADTVEALLGAI 119 Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YL+ G + A + + + L + R+DAKT+LQE+ + P Y V G Sbjct: 120 YLEAGFDTAQEVMRRLFAPLMDTLDADVVRKDAKTQLQEFLQGQRLPLPSYAVLDVRGAA 179 Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224 H +F V + L +G S+R AEQ AA +++R G Sbjct: 180 HQQQFKVECAVEALGLKVEGEGDSRRRAEQDAATRMIERIG 220 >gi|332525373|ref|ZP_08401536.1| ribonuclease III [Rubrivivax benzoatilyticus JA2] gi|332108645|gb|EGJ09869.1| ribonuclease III [Rubrivivax benzoatilyticus JA2] Length = 241 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M A R+ L++R+G+ F +L+ +ALTH S + ERLEFLGD +L +S LL+ Sbjct: 1 MDA-RHDALQQRLGHRFTRTALMTRALTHRSWGAEH---NERLEFLGDSVLNCAVSALLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + EG+L+ LV ++ +VA L L+ +R+S + + SI AD VE Sbjct: 57 ERFSGSDEGDLTRVRAHLVREDSLHRVALTLGLSEVLRMSEGEMRGGGAQRPSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A++LDGG + A V + + + A ++ + +DAKTELQEW A+ P Y++ Sbjct: 117 ALIGAIFLDGGFDPALATVRRLFGEVIAATEADAWSKDAKTELQEWLQARRLPVPAYRIV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221 G H F V ++ L A+ G S+R AEQ AA +L+ Sbjct: 177 ATRGEKHAQTFEVECAVATLGLAERGEGRSRRTAEQEAARRLLE 220 >gi|317014083|gb|ADU81519.1| ribonuclease III [Helicobacter pylori Gambia94/24] Length = 239 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 116/220 (52%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++R+SS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRISSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + K + L D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH F + + I A SK+ AEQ A + L++ Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKL 235 >gi|160871765|ref|ZP_02061897.1| ribonuclease III [Rickettsiella grylli] gi|159120564|gb|EDP45902.1| ribonuclease III [Rickettsiella grylli] Length = 230 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +L +++ Y F N LLE AL+H S ++ ERLE+LGD +L +I+ LF Sbjct: 4 EIESLCEKLNYQFKNPELLEDALSHRSF--RGNKNNERLEYLGDAVLNFVIAAALFRQNI 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A+EGELS +LV ET + +A+ +L ++R+ + K + SI AD +E+++ Sbjct: 62 KAREGELSRLRANLVRGETLTDLAQGFELGKYLRLGAGELKTGGAQRKSILADGMEAVVG 121 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLDGG + T + +++ R ++ +D KT+LQE+ AK P Y + G Sbjct: 122 AIYLDGGFQACETCILRWYANRLENIEMIPDLKDPKTQLQEYLQAKKLALPVYTILALEG 181 Query: 183 PDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225 P H F V +I GL A G+ S+R AEQ AA ++L+ I Sbjct: 182 PAHQQSFKVECQIQGLPHKAIGLGSSRRRAEQKAAEKILEELAI 225 >gi|304384763|ref|ZP_07367109.1| ribonuclease III [Pediococcus acidilactici DSM 20284] gi|304328957|gb|EFL96177.1| ribonuclease III [Pediococcus acidilactici DSM 20284] Length = 235 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 110/221 (49%), Gaps = 7/221 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L + F LL++A T +S + + + YER+EFLGD +L L++S L+ + Sbjct: 12 LSEMFDIHFTKHELLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVLQLVVSEYLYKRYP 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G+L+ ++V + S A+E +IR+ K S+ D+ ES I Sbjct: 72 EMPQGKLTRLRAAMVCEASFSDFAKECHFDRYIRLGKGEEKSGARQRPSLLCDIFESFIG 131 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G + FV + + L G+F D K+ELQE V Y++ +G Sbjct: 132 ALYLDQGRQAVEKFVRQVIFPK-LDEGRFDHIIDHKSELQELLQRNGEVEINYELISETG 190 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PD+D FTV V + A+G SK+AAEQ AA + L++ Sbjct: 191 PDNDLVFTVQVSAANQVLAKGSGHSKKAAEQNAANKALQKL 231 >gi|222152723|ref|YP_002561900.1| ribonuclease III [Streptococcus uberis 0140J] gi|254807903|sp|B9DRH1|RNC_STRU0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|222113536|emb|CAR41327.1| ribonuclease III [Streptococcus uberis 0140J] Length = 230 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 115/221 (52%), Gaps = 7/221 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L+ F +++LLE A TH+S ++ ++ ERLEFLGD +L L+IS LF + Sbjct: 8 LKSSFAIEFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFKKYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGELS + + +V E+ + +R +I++ K +I D+ E+ + Sbjct: 68 HKAEGELSKQRSMIVREESLASFSRHCAFEPYIKLGKGEEKSGGRNRDTILGDLFEAFLG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL LD G+E F+++ + ++ G F + D KT LQE AK +YKV SG Sbjct: 128 ALLLDKGVEEVRRFLNQVMIPQ-VEKGNFEKVNDYKTSLQEILQAKGDTIIDYKVINESG 186 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P H +F VVV + + ++G+ SK+ AEQ AA LK Sbjct: 187 PAHAKQFEVVVLANQVELSKGIGRSKKLAEQNAAENALKAL 227 >gi|86149260|ref|ZP_01067491.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596211|ref|ZP_01099448.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25] gi|218563224|ref|YP_002345004.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|22654076|sp|Q9PM40|RNC_CAMJE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|85840042|gb|EAQ57300.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191052|gb|EAQ95024.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25] gi|112360931|emb|CAL35732.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926829|gb|ADC29181.1| ribonuclease III [Campylobacter jejuni subsp. jejuni IA3902] gi|315927617|gb|EFV06948.1| ribonuclease III [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315928870|gb|EFV08132.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 305] Length = 224 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF+ F Sbjct: 3 NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I Sbjct: 61 KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++L+ G E A T + ++ + + +D KT+LQE K G TP+Y+ G Sbjct: 121 AIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 181 PDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222 >gi|83311357|ref|YP_421621.1| dsRNA-specific ribonuclease [Magnetospirillum magneticum AMB-1] gi|82946198|dbj|BAE51062.1| dsRNA-specific ribonuclease [Magnetospirillum magneticum AMB-1] Length = 228 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 83/220 (37%), Positives = 123/220 (55%), Gaps = 4/220 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L +G+AFA LL +ALTH S+ + + YERLEFLGDR+LGL+++ +LF+ Sbjct: 6 AELSALLGHAFARPELLAQALTHPSMHQGRKSRTSDPYERLEFLGDRVLGLVVAEMLFSR 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F + EG L+ R +LV E +++A E+ L + ++ I AD E++ Sbjct: 66 FPNEAEGALARRHAALVRREAVARIATEIGLGRCLVLAKGEDDAGGRANPGILADACEAV 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I ALY D G VA +FV W+ ++ +DAKT LQEWA + P Y+V + G Sbjct: 126 IGALYADAGFAVAASFVRSRWEPMMEEALAPPKDAKTGLQEWAQGRGKPLPHYQVLGQEG 185 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P H+P F + V + G+ A G SKR AEQ AA +L++ Sbjct: 186 PPHEPIFLIEVSVEGVGSAVGRGASKRVAEQAAAGLLLEQ 225 >gi|15611674|ref|NP_223325.1| ribonuclease III [Helicobacter pylori J99] gi|7531198|sp|Q9ZLH2|RNC_HELPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|4155159|gb|AAD06188.1| RIBONUCLEASE III [Helicobacter pylori J99] Length = 239 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + L D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH F + + I A SK+ AEQ A + L++ Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKL 235 >gi|308184450|ref|YP_003928583.1| ribonuclease III [Helicobacter pylori SJM180] gi|308060370|gb|ADO02266.1| ribonuclease III [Helicobacter pylori SJM180] Length = 239 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++ VSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAISLQDYLHVSSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + K + L D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH F + + I A SK+ AEQ A + L++ Sbjct: 196 DHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 235 >gi|28378329|ref|NP_785221.1| ribonuclease III [Lactobacillus plantarum WCFS1] gi|254556537|ref|YP_003062954.1| ribonuclease III [Lactobacillus plantarum JDM1] gi|300767266|ref|ZP_07077178.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180480|ref|YP_003924608.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258332|sp|Q88WK0|RNC_LACPL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28271164|emb|CAD64069.1| ribonuclease III [Lactobacillus plantarum WCFS1] gi|254045464|gb|ACT62257.1| ribonuclease III [Lactobacillus plantarum JDM1] gi|300495085|gb|EFK30241.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045971|gb|ADN98514.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ST-III] Length = 231 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 114/229 (49%), Gaps = 7/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56 M + L++R G F + LL +A T +S + +Q+ YER+EFLGD +L L++S Sbjct: 1 MITELAAMLKERFGIVFNDPDLLAEAFTQASYVNEHQDQQLKYYERVEFLGDAVLELVVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + +G+L+ ++V E+ + ARE D +IR+ +K S+ Sbjct: 61 EYLYKRYKDMPQGKLTRLRAAMVCEESFASFARECDFPQYIRLGKGEQKAHAWERDSLLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174 D+ ES + ALYLD G E FV + + L G+F D KT LQE+ V + Sbjct: 121 DIFESFVGALYLDQGREPVLKFVHQVIFPK-LDEGRFDGVFDYKTTLQEYLQRDGDVAID 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y++ + GP ++ + + V G +G SK+ AEQ AA + + Sbjct: 180 YQLIEQDGPANERSYEIAVLADGQKIGEGWGHSKKEAEQSAARQAYSQL 228 >gi|83951643|ref|ZP_00960375.1| ribonuclease III [Roseovarius nubinhibens ISM] gi|83836649|gb|EAP75946.1| ribonuclease III [Roseovarius nubinhibens ISM] Length = 227 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 91/218 (41%), Positives = 124/218 (56%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + R+G+ F +LL +ALTHSS+S ++ +RLEFLGDR+LGL++S L H Sbjct: 4 SAEIKAFAARLGHEFQTPALLVQALTHSSMSTPNRDDNQRLEFLGDRVLGLVMSEALLEH 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A EG L+ RFN+LV ETC+ VAR++DL + +++ ++ D +E++ Sbjct: 64 DRKAAEGTLAPRFNALVRKETCADVARQIDLGAVLKLGRSEMLSGGRRKQALLGDAMEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YLD G E A T V W R + RDAKT LQEWA A+ P Y+ RSG Sbjct: 124 IAAVYLDAGFETARTVVLALWGDRITRVEADARDAKTALQEWAQARGLAPPRYEEVARSG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 PDH P FT+V + A SKR AEQ AA +L Sbjct: 184 PDHAPEFTIVARLETGEEAASKAGSKRQAEQAAAKALL 221 >gi|241662605|ref|YP_002980965.1| ribonuclease III [Ralstonia pickettii 12D] gi|309781187|ref|ZP_07675924.1| ribonuclease III [Ralstonia sp. 5_7_47FAA] gi|240864632|gb|ACS62293.1| ribonuclease III [Ralstonia pickettii 12D] gi|308920008|gb|EFP65668.1| ribonuclease III [Ralstonia sp. 5_7_47FAA] Length = 256 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 108/221 (48%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S ERLEFLGD IL ++ +L+ F Sbjct: 1 MSLDALQQRLGYRFSKPELLQQALTHRS---HSAMHNERLEFLGDSILNCAVADMLYGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L +R+ K SI AD +E++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + K + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPLYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H+ +F V I L G S+RAAEQ AA L+ Sbjct: 178 GAAHNQQFEVECSIPKLEIRVSGSGASRRAAEQSAAKLALE 218 >gi|260881779|ref|ZP_05893556.1| ribonuclease III [Mitsuokella multacida DSM 20544] gi|260847870|gb|EEX67877.1| ribonuclease III [Mitsuokella multacida DSM 20544] Length = 247 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 116/219 (52%), Gaps = 5/219 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHFDS 65 L +R+G F + +LL++ALTH+S ++ + + ERLEFLGD +L L ST L+ HF Sbjct: 20 LSERLGVTFHDIALLDQALTHTSYANESKRNTAHNERLEFLGDAVLELASSTYLYEHFPE 79 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL+ S+V + T +++A L L ++ + + DV E++I A Sbjct: 80 MPEGELTKTRASIVCSTTLAKLATGLHLGDYLLLGRGEEMGGGRTRQTNLEDVFEAVIGA 139 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD G E A +V + + + G +D KT LQE K G + Y++ SGP Sbjct: 140 VYLDQGWEAAQAYVVRQLRGEFENAEHGAILKDYKTILQEIVFRKEGQSIAYELVSESGP 199 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 DH FT V ++G +G SK+ AEQ AA L++ Sbjct: 200 DHAKEFTFRVRVTGKVMGEGTGHSKKEAEQHAARRALEK 238 >gi|294340985|emb|CAZ89380.1| Ribonuclease III (RNase III) [Thiomonas sp. 3As] Length = 276 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 6/221 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LE R+GY F +R L E+ALTH S + ERLEFLGD +L L + L++ Sbjct: 3 TALETRLGYVFRDRKLFERALTHRSFG---ADHNERLEFLGDSVLNLSAAAWLYHQAARQ 59 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS +LV AE ++VAR +DL F+R+ + + SI AD VE+L+ A+ Sbjct: 60 DEGQLSRLRAALVRAEALAEVARAIDLGRFLRLGEGELQSGGAQRESILADTVEALLGAI 119 Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YL+ G + A + + + L + R+DAKT+LQE+ + P Y V G Sbjct: 120 YLEAGFDTAQEVMRRLFAPLMDTLDADVVRKDAKTQLQEFLQGQRLPLPSYAVLDVRGAA 179 Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224 H +F V + L +G S+R AEQ AA +++R G Sbjct: 180 HQQQFKVECAVEALGLKVEGEGDSRRRAEQDAATRMIERIG 220 >gi|239928705|ref|ZP_04685658.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672] gi|291437029|ref|ZP_06576419.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672] gi|291339924|gb|EFE66880.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672] Length = 286 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 A ++ LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 27 ASSHTLLEGRLGYQ-VESALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLY 85 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+L+ ++V++ ++V R LDL SFIR+ SI AD +E Sbjct: 86 RTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLE 145 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD G++ A V + + KS D KT LQE + PEY VT Sbjct: 146 AVIGAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT 205 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 206 -ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 247 >gi|108563072|ref|YP_627388.1| ribonuclease III [Helicobacter pylori HPAG1] gi|107836845|gb|ABF84714.1| ribonuclease III [Helicobacter pylori HPAG1] Length = 240 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 19 YTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 76 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 77 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 136 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + L D KT LQE A+F V P Y++ GP Sbjct: 137 VYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 196 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH F + + I A SK+ AEQ A L++ Sbjct: 197 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQKL 236 >gi|255019675|ref|ZP_05291754.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756] gi|254970898|gb|EET28381.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756] Length = 232 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 107/221 (48%), Gaps = 5/221 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L++ IGY F + LL +ALTH S + ERLEFLGD L +++ L+ F Sbjct: 3 SLERLQQAIGYVFQDEVLLRQALTHRSAGAQH---NERLEFLGDAALNFVVAAELYARFP 59 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS LV ET +QVA E+ LA + + + + SI+AD +E++I Sbjct: 60 KVSEGNLSRMRARLVREETLAQVAGEIALADSLILGPGELRSGGARRDSIRADALEAIIG 119 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A YLDGG A V + ++ + RD KT LQE+ + P Y + G Sbjct: 120 AAYLDGGFAAAQGIVRQLIVPLMTEALGDEELRDPKTRLQEFLQGQGKPLPSYSLVEEKG 179 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H+ RF + G+ S+R AEQ AA ++L++ Sbjct: 180 QAHERRFVARCSVQGVPATDAEAGSRRKAEQQAAQQMLEQL 220 >gi|261839511|gb|ACX99276.1| ribonuclease III [Helicobacter pylori 52] Length = 239 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 4/221 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 17 SYITLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFY 74 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS ++VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 75 QYDEGKLSKLRAAIVSAHGFTKLAKIIALQDYLRVSSSEEISNGREKPSILSSAFEALMA 134 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YL+ G+ + + L D KT LQE A+F V P Y++ G Sbjct: 135 GVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKG 194 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH F + + I A SK+ AEQ A + L++ Sbjct: 195 PDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 235 >gi|222824476|ref|YP_002576050.1| ribonuclease III [Campylobacter lari RM2100] gi|222539697|gb|ACM64798.1| ribonuclease III [Campylobacter lari RM2100] Length = 222 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 113/221 (51%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L++R+ Y F N LL +ALTH S Y + ERLEFLGD ++ L++ LF F Sbjct: 2 LKKLQERLNYHFKNEQLLIEALTHKSYKKPY--NNERLEFLGDAVMDLVVGEFLFFKFQK 59 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG LS +LV+ ++ + +A++LDL I +S + SI +D E+L+ A Sbjct: 60 ESEGNLSKLRAALVNEKSFANLAQKLDLGECIFMSIAEENNDGRNKPSILSDAFEALMGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G E + + + +D KT+LQE A TPEY V GP Sbjct: 120 MYLEIGFEKTKNIALNLLNEVYPHIDTQSLFKDYKTKLQEITQANMAGTPEYIVVNAFGP 179 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH +F + ++I G A+ + SK+ A+Q A L++ G Sbjct: 180 DHKKQFEIAIKIQGKEFARAIAGSKKEAQQQCAKIALEKLG 220 >gi|15645286|ref|NP_207456.1| ribonuclease III [Helicobacter pylori 26695] gi|2313785|gb|AAD07725.1| ribonuclease III (rnc) [Helicobacter pylori 26695] Length = 240 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 4/221 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 SYTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFY 75 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 QYDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMA 135 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YL+ G+ + + L D KT LQE A+F V P Y++ G Sbjct: 136 GVYLEAGLAKVQKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKG 195 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH F + + I A SK+ AEQ A + L++ Sbjct: 196 PDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKL 236 >gi|262368562|ref|ZP_06061891.1| dsRNA-specific ribonuclease [Acinetobacter johnsonii SH046] gi|262316240|gb|EEY97278.1| dsRNA-specific ribonuclease [Acinetobacter johnsonii SH046] Length = 230 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S L + L RIGY F LL+ ALTH S+SH Y +YERLEFLGD +LG++I+ L+ Sbjct: 6 SKLSEARLASRIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYK 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EG L+ +LV E ++A +L L+ + +S+ K SI AD VES Sbjct: 64 AYPTENEGRLTRMRATLVRQEALGKIANDLKLSQSLILSTGELKSGGHHRESILADTVES 123 Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +I A+Y+D + V V K+++ ++ +D K+ LQE+ A+ P Y V Sbjct: 124 IIGAIYVDCSDLTVLEPIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKALPVYDVV 183 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 G + F V ++ GL+ G S+R AEQ AAA++LK Sbjct: 184 DIQGDAPNQHFKVECKVDGLSVVNGEGTSRRFAEQAAAADILK 226 >gi|330957807|gb|EGH58067.1| ribonuclease III [Pseudomonas syringae pv. maculicola str. ES4326] Length = 229 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 6/214 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+L Sbjct: 59 FPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLD G+E A V + +L +D KT LQE+ ++ P Y+V Sbjct: 119 IGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVDI 178 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V EI+ L ++G S+R AEQ Sbjct: 179 QGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212 >gi|261408033|ref|YP_003244274.1| ribonuclease III [Paenibacillus sp. Y412MC10] gi|329929588|ref|ZP_08283295.1| ribonuclease III [Paenibacillus sp. HGF5] gi|261284496|gb|ACX66467.1| ribonuclease III [Paenibacillus sp. Y412MC10] gi|328936233|gb|EGG32685.1| ribonuclease III [Paenibacillus sp. HGF5] Length = 233 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 64/214 (29%), Positives = 100/214 (46%), Gaps = 5/214 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L+ ++ F N LL++A TH+S + ++ + ERLEFLGD +L L +S Sbjct: 1 MLSGDLKQLQHKLQIQFRNAMLLKQAFTHASYVNEHRFSQSQDNERLEFLGDAVLELTVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+N F EGEL+ ++V + Q A LD ++ + ++ A Sbjct: 61 EFLYNLFPDRPEGELTKLRAAIVCEPSLVQFAVSLDFGRYVLLGKGEEMTGGRTRPALLA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEY 175 DV ES + ALYLD G+E F+ + +G+ + D KTELQE EY Sbjct: 121 DVFESFVGALYLDQGLEAVRRFLSDHVFPTVTVNGRPQMSDYKTELQELTQHHGMGALEY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 ++ GP H+ F V + +G SK+ Sbjct: 181 RIVEERGPAHEREFVSEVYMGSECLGRGSGRSKK 214 >gi|300704607|ref|YP_003746210.1| ribonuclease III (RNAse III) [Ralstonia solanacearum CFBP2957] gi|299072271|emb|CBJ43604.1| Ribonuclease III (RNase III) [Ralstonia solanacearum CFBP2957] Length = 256 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 113/221 (51%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ + LL++ALTH S S ++ ERLEFLGD IL ++ +L+ F Sbjct: 1 MSLDALQQRLGYRFSKQELLQQALTHRSHSATH---NERLEFLGDSILNCAVADMLYGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L +R+ K SI AD +E++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H+ +F V I L G S+RAAEQ AA L+ Sbjct: 178 GAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQSAAKLALE 218 >gi|297617466|ref|YP_003702625.1| ribonuclease III [Syntrophothermus lipocalidus DSM 12680] gi|297145303|gb|ADI02060.1| ribonuclease III [Syntrophothermus lipocalidus DSM 12680] Length = 232 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 106/206 (51%), Gaps = 3/206 (1%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL KALTH S S + E+ +RLEFLGD +L ++++ L+ +F EG+L+ Sbjct: 21 DTGLLTKALTHPSYSQENEAVENNQRLEFLGDAVLNMVVAEYLYKNFPERPEGDLTRIRA 80 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +V + +VA L + ++ + SI AD VE+++ A+YLD G+E A Sbjct: 81 KVVCEKALVKVANTLKVGEYLYLGRGEELSGGRKRNSILADTVEAVVGAVYLDQGLEYAR 140 Query: 137 TFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 F+ +Y Q + + D K++LQE ++ Y + SGP HD F V Sbjct: 141 DFILRYLAQDIHEVAEGNFYDYKSQLQELVQSRGKDNVTYAILEESGPAHDKTFIAGVFY 200 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLK 221 AQG+ SK+ AEQ AA +VL+ Sbjct: 201 RHKLLAQGVGKSKKEAEQKAAEKVLQ 226 >gi|153871985|ref|ZP_02001008.1| Ribonuclease III [Beggiatoa sp. PS] gi|152071548|gb|EDN68991.1| Ribonuclease III [Beggiatoa sp. PS] Length = 225 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 118/227 (51%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ Y+ L + +GY F L ALTH S+ + ERLEFLGD +L + + +L+ Sbjct: 1 MN-QDYNHLCQALGYHFKQPEHLTTALTHRSVGTPH---NERLEFLGDALLNCITAKMLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F SA+EG+L+ +LV +T ++A+ L+L ++R+ K + TS AD VE Sbjct: 57 ERFPSAREGQLTRLRANLVKRDTLVKIAQRLELGKYLRLGDGEIKSGGAKRTSTLADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++I A+YLD ++ + W++ K S + +D KT LQE+ + P Y+V Sbjct: 117 AIIGAIYLDSDMKTCQAVILPIWQESLSKLSLEKIKDPKTRLQEYLQERQQTLPIYRVLS 176 Query: 180 RSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 SG H+ F V I P G S+R AEQ AAA+VL + Sbjct: 177 TSGTPHEQHFEVECRIPYLKEPTYGSGHSRRRAEQSAAAKVLSILNV 223 >gi|188527489|ref|YP_001910176.1| ribonuclease III [Helicobacter pylori Shi470] gi|238691923|sp|B2UTG4|RNC_HELPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|188143729|gb|ACD48146.1| ribonuclease III [Helicobacter pylori Shi470] Length = 238 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 115/220 (52%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 17 YATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 74 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++ +SS SI + E+L+A Sbjct: 75 YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLHISSSEEISNGREKPSILSSAFEALMAG 134 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + L D KT LQE A+F V P Y++ GP Sbjct: 135 VYLEAGLAKVQKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGP 194 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH F + + I A SK+ AEQ A + L++ Sbjct: 195 DHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 234 >gi|313896309|ref|ZP_07829862.1| ribonuclease III [Selenomonas sp. oral taxon 137 str. F0430] gi|320529287|ref|ZP_08030377.1| ribonuclease III [Selenomonas artemidis F0399] gi|312975108|gb|EFR40570.1| ribonuclease III [Selenomonas sp. oral taxon 137 str. F0430] gi|320138461|gb|EFW30353.1| ribonuclease III [Selenomonas artemidis F0399] Length = 238 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 126/232 (54%), Gaps = 8/232 (3%) Query: 1 MSALRYSTLEKR---IGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLL 54 +S R + LE+ +G AF+N +LL++ALTH S ++ ++S ERLEFLGD +L L Sbjct: 5 LSPARRAELERLAAHMGVAFSNIALLDEALTHPSYANESRDSIPHNERLEFLGDAVLELA 64 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ST L+ HF EGEL+ SLV ++T +++AR L L +R+ + + + Sbjct: 65 SSTYLYKHFPQCSEGELTKMRASLVQSDTLARLARRLHLGRHLRLGHGELRGGGADRQNN 124 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVT 172 +V E++I A+YLD G E A +V ++ + R D KT LQE ++ Sbjct: 125 LENVFEAVIGAVYLDRGWESARDYVCTQLVPEIGNVQPAQVRCDYKTTLQEHVQKDRHMS 184 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 Y++ SGPDHD RFT V + G +G SK+ AEQ AAA L + G Sbjct: 185 VAYELVGESGPDHDKRFTTRVLVGGETLGEGTGPSKKKAEQQAAAHALSKLG 236 >gi|153816163|ref|ZP_01968831.1| hypothetical protein RUMTOR_02411 [Ruminococcus torques ATCC 27756] gi|317500483|ref|ZP_07958707.1| ribonuclease III [Lachnospiraceae bacterium 8_1_57FAA] gi|331089416|ref|ZP_08338315.1| ribonuclease III [Lachnospiraceae bacterium 3_1_46FAA] gi|145846498|gb|EDK23416.1| hypothetical protein RUMTOR_02411 [Ruminococcus torques ATCC 27756] gi|316898238|gb|EFV20285.1| ribonuclease III [Lachnospiraceae bacterium 8_1_57FAA] gi|330404784|gb|EGG84322.1| ribonuclease III [Lachnospiraceae bacterium 3_1_46FAA] Length = 228 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 72/209 (34%), Positives = 112/209 (53%), Gaps = 5/209 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + LE++IGY F N S LE+A+ HSS ++ ++ ERLEFLGD +L L+ S LF Sbjct: 4 KLKELEQKIGYRFRNFSFLEQAMMHSSYTNEHRMEKYRCNERLEFLGDAVLELISSEFLF 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EGEL+ S+V ++ + AR++DL S++ + F S+ +D +E Sbjct: 64 RQSPKVPEGELTKTRASMVCEQSLAMCARDIDLGSYLLLGKGEEVTGGRFRDSVTSDALE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI A+YLDGG A F+ ++ + K D+KT LQE A+ EY + Sbjct: 124 ALIGAIYLDGGFTNAKEFIHRFVLTDQ-EDKKLFYDSKTILQEIVQAEKLGEIEYHLIGE 182 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDH+ F+V + I G + +G +K+ Sbjct: 183 EGPDHNKSFSVELTIRGRSYGKGKGRTKK 211 >gi|7531276|sp|P56118|RNC_HELPY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 239 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 4/221 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 17 SYTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFY 74 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 75 QYDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMA 134 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YL+ G+ + + L D KT LQE A+F V P Y++ G Sbjct: 135 GVYLEAGLAKVQKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKG 194 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH F + + I A SK+ AEQ A + L++ Sbjct: 195 PDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKL 235 >gi|121613213|ref|YP_001001278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176] gi|121504230|gb|EAQ72743.2| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176] Length = 225 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF+ F Sbjct: 4 NIEKLERSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I Sbjct: 62 KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIG 121 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++L+ G E A T + ++ + + +D KT+LQE K G TP+Y+ G Sbjct: 122 AIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 181 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 182 PDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 223 >gi|305432452|ref|ZP_07401614.1| ribonuclease III [Campylobacter coli JV20] gi|304444491|gb|EFM37142.1| ribonuclease III [Campylobacter coli JV20] Length = 225 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 124/222 (55%), Gaps = 4/222 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+++ Y F ++ LL ALTH S Y + ERLEFLGD +L L++ LF+ F Sbjct: 4 NIELLEQKLAYKFKDKDLLIHALTHKSFKKPY--NNERLEFLGDAVLDLVVGEYLFHKFA 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +LV+ ++ +++A L+L FI +S+ + SI +D +E+++ Sbjct: 62 KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDALEAIMG 121 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++L+ G + A K ++ + + +D KT+LQE AK G TP+Y+ G Sbjct: 122 AIHLEAGFDFARNIALKLIEKNFPQIDAKNLIKDYKTKLQEITQAKLGQTPQYETVRAFG 181 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH +F + + ++G A+ + +K+ A+Q+AA L++ G Sbjct: 182 PDHLKQFEIALFLNGQELARAIAGNKKEAQQMAAKITLEKLG 223 >gi|218885347|ref|YP_002434668.1| ribonuclease III [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226735370|sp|B8DPB3|RNC_DESVM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|218756301|gb|ACL07200.1| Ribonuclease III [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 230 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 115/223 (51%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNH 62 + L+ I YAF + LL A+THSS ++ + E ERLEFLGD +L L +S LF Sbjct: 2 FEKLQSDIHYAFNDAGLLATAMTHSSWANEQQEHVEHNERLEFLGDAVLELCVSEELFAR 61 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+L+ LVS +++AR+L L ++R+ +S+ +D +E++ Sbjct: 62 FPGAREGDLTRMRARLVSKPALAELARDLQLELYLRLGRGEESQGGRERSSLLSDALEAM 121 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A++LDGG E A V R GK +D K+ LQE + F P Y + Sbjct: 122 LGAVFLDGGYERARAVVRHVLAARWPCDADGKRSKDYKSRLQELTQSLFRERPVYALMGS 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP+H+ RF V + + + S + AEQ+AA LK Sbjct: 182 SGPEHEKRFEVRLTLPDGTVFTAIGPSVKRAEQMAAGLALKNL 224 >gi|114770106|ref|ZP_01447644.1| Ribonuclease III [alpha proteobacterium HTCC2255] gi|114548943|gb|EAU51826.1| Ribonuclease III [alpha proteobacterium HTCC2255] Length = 226 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 90/222 (40%), Positives = 126/222 (56%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + + KR+GY F LL +A+THSS+S + + +R EFLGDR+LGL IS LF+ Sbjct: 3 PSAELTAFSKRLGYDFQKPELLIQAMTHSSLSSTTRGDNQRFEFLGDRVLGLSISDALFH 62 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 A EG L+ RFN+LV ETC+++A E+ L +++ ++ D +E+ Sbjct: 63 KDSDASEGLLAPRFNALVRKETCAEIAIEIKLGEALKMGRSEMLSGGRRKIAVLGDAMEA 122 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +I A+YLD G E+A V + W + RD+KT LQEWA AK TP+Y RS Sbjct: 123 VIGAVYLDAGFEIARDMVIRLWSNHIDNAAHDARDSKTILQEWAQAKKLPTPKYIEVDRS 182 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH P FT+ V I A+ SKRAA Q AAA++L + Sbjct: 183 GPDHAPIFTIEVSIETGQSAKAQAQSKRAASQDAAADLLGQL 224 >gi|157415855|ref|YP_001483111.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116] gi|283957021|ref|ZP_06374493.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336] gi|189043300|sp|A8FNU7|RNC_CAMJ8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157386819|gb|ABV53134.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116] gi|283791522|gb|EFC30319.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336] gi|307748491|gb|ADN91761.1| Ribonuclease 3 [Campylobacter jejuni subsp. jejuni M1] gi|315931680|gb|EFV10641.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 327] Length = 224 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF+ F Sbjct: 3 NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I Sbjct: 61 KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++L+ G E A T + ++ + + +D KT+LQE K G TP+Y+ G Sbjct: 121 AIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 181 PDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222 >gi|212212136|ref|YP_002303072.1| ribonuclease III [Coxiella burnetii CbuG_Q212] gi|226741368|sp|B6IYZ9|RNC_COXB2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|212010546|gb|ACJ17927.1| ribonuclease III [Coxiella burnetii CbuG_Q212] Length = 233 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 125/219 (57%), Gaps = 7/219 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + L +R+G+ F N LL+ ALTH S S ++ ERLEFLGD +LG +I++ L+ Sbjct: 4 LNKLMERLGHQFNNLELLKIALTHRS---SGADNNERLEFLGDSVLGFIIASELYQRRPQ 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EG+LS S+V+ + +Q++ +L + ++++ +K SI AD +E+++ + Sbjct: 61 AREGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGS 120 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +Y+D G+E V ++ +R K ++DAK+ LQEW A+ P Y+V +G Sbjct: 121 IYIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEV-KITGE 179 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 H FTV + GL +G++ ++R AEQ+AA L+ Sbjct: 180 AHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218 >gi|226940389|ref|YP_002795463.1| ribonuclease III [Laribacter hongkongensis HLHK9] gi|226715316|gb|ACO74454.1| Rnc [Laribacter hongkongensis HLHK9] Length = 238 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L + IG+ F + +LL++ALTH S Q + ER EF+GD IL I+ +LF+ Sbjct: 3 TPQPIDRLMQHIGHLFTSPALLKEALTHRSYG---QPNNERFEFVGDGILNYTIARMLFD 59 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+LS +LV+ T +++AREL L + + RK SI AD +E+ Sbjct: 60 AFPELSEGQLSRLRANLVNQATLAEIARELTLGDCLFLGDGERKSGGHDRPSILADAMEA 119 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ LD VA V + + R + + +DAKT LQE A+ P Y++ Sbjct: 120 IFAAVCLDADFAVAENVVRRLYAARVAGIDLNRQAKDAKTRLQEMLQARRLPLPAYRILN 179 Query: 180 RSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221 +SG H +F V +I L A G S+RAAEQ+AA ++ Sbjct: 180 QSGDAHLSQFEVACDIPQLGLATCGEGSSRRAAEQLAAERAIE 222 >gi|163790810|ref|ZP_02185235.1| Ribonuclease (RNase III) [Carnobacterium sp. AT7] gi|159873878|gb|EDP67957.1| Ribonuclease (RNase III) [Carnobacterium sp. AT7] Length = 231 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L+ + G F + S LE+A THSS + ++ + ER+EFLGD +L L +S Sbjct: 1 MDEAFLTHLKTKFGLVFQDLSYLEEAFTHSSYVNEHRNLKLKDNERIEFLGDAVLELTVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + + EG+L+ ++V + SQ A+E + FIR+ + ++ Sbjct: 61 RFLYELYPNVPEGKLTRLRATIVCEASFSQFAKEYEFDQFIRLGKGEERMNGRKRPALLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ ES + ALYLD G++ F+++ + +KSG F D KT LQE+ K + E Sbjct: 121 DLFESFVGALYLDQGLDGVLFFLEQTIFPK-IKSGAFSHVMDHKTNLQEFLQQKGEIEIE 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y + GP H F V V G QG +K+AAEQVAA L Sbjct: 180 YNLVDEIGPAHQKAFVVEVLAEGQLLGQGQGKTKKAAEQVAAENAL 225 >gi|146329595|ref|YP_001209601.1| ribonuclease III [Dichelobacter nodosus VCS1703A] gi|146233065|gb|ABQ14043.1| ribonuclease III [Dichelobacter nodosus VCS1703A] Length = 233 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 67/218 (30%), Positives = 108/218 (49%), Gaps = 6/218 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + + LE +GY+F N LL++ALTH S S + ER E+LGD +L +IS L+ Sbjct: 5 PKINWQLLEHALGYSFQNPELLQRALTHRSFS---ADHNERFEYLGDALLETVISVALYR 61 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EG+L+ ++V + + + +A++LDL ++R+ S K SI AD VE+ Sbjct: 62 RYPESPEGDLTRLRAAIVKSSSLAVIAKQLDLGRYLRLGSGELKSGGKRRESILADAVEA 121 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTF 179 +IAA+YLD + +D KT LQE+ ++ P Y++ Sbjct: 122 IIAAVYLDSDFYRCEQITLALFAPAIAALPDVEALKDPKTRLQEYLQSRDLPLPVYELVE 181 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 GP+H FT+ + S S++ AEQ AA Sbjct: 182 EKGPEHAKIFTISAK-SERFCTTATASSRKKAEQAAAE 218 >gi|222055246|ref|YP_002537608.1| Ribonuclease III [Geobacter sp. FRC-32] gi|221564535|gb|ACM20507.1| Ribonuclease III [Geobacter sp. FRC-32] Length = 238 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 124/227 (54%), Gaps = 9/227 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60 + LEK I Y F ++SLL +ALTH S + ++ +RLEFLGD ++GL++S LF Sbjct: 8 SIAALEKLINYDFTDKSLLVEALTHPSFVNESGGKVRQDNQRLEFLGDAVVGLVLSHDLF 67 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F ++EGEL+ SLV + + +AR +DL + +++ + S+ AD E Sbjct: 68 SRFPDSREGELTKLRASLVDEASLAILARAIDLGAHLKLGRGEERSGGRTKPSLLADAYE 127 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVT 178 +L+AA+YLDGGIE A + ++ K RD KTE QE AH + P Y + Sbjct: 128 ALLAAVYLDGGIEPAAAIIKSHFASFMEKRNIRTSGRDFKTEFQELAHRLRSLAPRYLLQ 187 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKR 222 SGPDH F+V V I +G+ SK+ AEQ AA + LK+ Sbjct: 188 GVSGPDHQRIFSVAVFIGEEFMGEGLAKSKKEAEQAAAEQGIAFLKK 234 >gi|312959172|ref|ZP_07773691.1| Ribonuclease 3 [Pseudomonas fluorescens WH6] gi|311286942|gb|EFQ65504.1| Ribonuclease 3 [Pseudomonas fluorescens WH6] Length = 229 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 109/214 (50%), Gaps = 6/214 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 2 TVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+LS LV ET + +AR L ++R+ S K SI AD +E+L Sbjct: 59 FPQAREGQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEAL 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLD G+E A V + L +D KT LQE+ ++ P Y+V Sbjct: 119 IGAIYLDAGMEAAKARVTAWLTSEIESLTLVDTNKDPKTRLQEFLQSRGCELPRYEVVDI 178 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V EI+ L ++G S+R AEQ Sbjct: 179 QGEPHCRVFFVECEITLLNEKSRGQGVSRRIAEQ 212 >gi|290957120|ref|YP_003488302.1| ribonuclease III [Streptomyces scabiei 87.22] gi|260646646|emb|CBG69743.1| putative ribonuclease III [Streptomyces scabiei 87.22] Length = 272 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 17 TASSHTLLEGRLGYKLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 75 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R LDL SFIR+ SI AD + Sbjct: 76 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTL 135 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS D KT LQE + PEY V Sbjct: 136 EAVIGAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLV 195 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 196 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 238 >gi|90961602|ref|YP_535518.1| ribonuclease III [Lactobacillus salivarius UCC118] gi|301299302|ref|ZP_07205588.1| ribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a] gi|122449142|sp|Q1WUA0|RNC_LACS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90820796|gb|ABD99435.1| Ribonuclease III [Lactobacillus salivarius UCC118] gi|300214418|gb|ADJ78834.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus salivarius CECT 5713] gi|300853146|gb|EFK80744.1| ribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a] Length = 232 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 7/230 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES------YERLEFLGDRILGLL 54 M L++ F + LL+ A TH+S + E YER+EFLGD ++ L Sbjct: 1 MIEGLQEMLKRDFNITFKDVDLLDAAFTHASYVNETPERKKKLKYYERIEFLGDAVMQLC 60 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 +S ++ H+ EG++S ++V A++ S+ A E +IR+ K S+ Sbjct: 61 VSEYIYEHYPEMPEGKMSRLRAAMVRADSFSKFAIECHFNEYIRLGKGEEKGNARQRPSL 120 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTP 173 D+ ES I ALYLD G + F+ K + L D KTELQE Sbjct: 121 LCDIFESFIGALYLDQGKDEVVRFISKVIFPKLELGWFDHMMDNKTELQEVLQQNGECKI 180 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +Y +GPD++ +T+ V ++ +G +K+AAEQ+AA + LK+ Sbjct: 181 KYNEVNVTGPDNERVYTMNVVVNNEVMGEGTGRTKKAAEQMAAYQALKKL 230 >gi|308068621|ref|YP_003870226.1| ribonuclease III [Paenibacillus polymyxa E681] gi|310641509|ref|YP_003946267.1| ribonuclease iii [Paenibacillus polymyxa SC2] gi|305857900|gb|ADM69688.1| Ribonuclease III (RNase III) [Paenibacillus polymyxa E681] gi|309246459|gb|ADO56026.1| Ribonuclease III [Paenibacillus polymyxa SC2] Length = 232 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 104/210 (49%), Gaps = 5/210 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 L++++ F NR LL++A TH+S + ++ ERLEFLGD +L L +S L+ Sbjct: 4 DLKQLQQKLHIQFNNRQLLKQAFTHASYVNEHRFSQHADNERLEFLGDAVLELTVSEQLY 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + + EGEL+ ++V + + A L+ ++ + ++ ADV E Sbjct: 64 NQYPNRPEGELTKLRAAIVCEPSLVKFAVGLEFGQYVLLGKGEELTGGRTRPALLADVFE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179 + + ALYLD G+E +F+++Y + + +GK + D KTELQE EYK+ Sbjct: 124 AFVGALYLDQGLEAVRSFLERYIFPQIVLNGKLQMSDFKTELQELTQHHNMGMLEYKIVE 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V + G SK+ Sbjct: 184 ERGPAHEREFVAEVYMDSERLGAGTGRSKK 213 >gi|57168805|ref|ZP_00367936.1| ribonuclease III Cj1635c [Campylobacter coli RM2228] gi|57019852|gb|EAL56535.1| ribonuclease III Cj1635c [Campylobacter coli RM2228] Length = 224 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 124/222 (55%), Gaps = 4/222 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+++ Y F ++ LL ALTH S Y + ERLEFLGD +L L++ LF+ F Sbjct: 3 NIELLEQKLAYKFKDKDLLIHALTHKSFKKPY--NNERLEFLGDAVLDLVVGEYLFHKFA 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +LV+ ++ +++A L+L FI +S+ + SI +D +E+++ Sbjct: 61 KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDALEAIMG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++L+ G + A K ++ + + +D KT+LQE AK G TP+Y+ G Sbjct: 121 AIHLEAGFDFARNIALKLIEKNFPQIDAKNLIKDYKTKLQEITQAKLGQTPQYETVRAFG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH +F + + ++G A+ + +K+ A+Q+AA L++ G Sbjct: 181 PDHLKQFEIALFLNGQELARAIAGNKKEAQQMAAKITLEKLG 222 >gi|253573486|ref|ZP_04850829.1| ribonuclease III [Paenibacillus sp. oral taxon 786 str. D14] gi|251847014|gb|EES75019.1| ribonuclease III [Paenibacillus sp. oral taxon 786 str. D14] Length = 232 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 68/210 (32%), Positives = 101/210 (48%), Gaps = 5/210 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 L++++ AF NR LL++A TH+S + ++ E ERLEFLGD +L L +S L+ Sbjct: 4 DLKQLQQKLELAFQNRQLLKQAFTHASYVNEHRFSQYEDNERLEFLGDAVLELTVSEHLY 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EGEL+ ++V + + A L+ ++ + ++ ADV E Sbjct: 64 RLFPDRPEGELTKLRAAIVCEPSLVKFAENLEFGKYVLLGKGEELTGGRTRPALLADVFE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179 S I ALYLD G+E F+ ++ GK D KTELQE T EY++ Sbjct: 124 SFIGALYLDQGLEAVTAFLHRHVFPNLTLDGKLSTGDFKTELQELTQHHGMGTLEYRIIE 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V + G QG SK+ Sbjct: 184 ERGPAHEREFVAEVRMDGRPLGQGTGRSKK 213 >gi|86152963|ref|ZP_01071168.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13] gi|167006173|ref|ZP_02271931.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176] gi|85843848|gb|EAQ61058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13] Length = 224 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF+ F Sbjct: 3 NIEKLERSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I Sbjct: 61 KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++L+ G E A T + ++ + + +D KT+LQE K G TP+Y+ G Sbjct: 121 AIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 181 PDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222 >gi|28871359|ref|NP_793978.1| ribonuclease III [Pseudomonas syringae pv. tomato str. DC3000] gi|213971119|ref|ZP_03399238.1| ribonuclease III [Pseudomonas syringae pv. tomato T1] gi|237798713|ref|ZP_04587174.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806146|ref|ZP_04592850.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6] gi|301381864|ref|ZP_07230282.1| ribonuclease III [Pseudomonas syringae pv. tomato Max13] gi|302063246|ref|ZP_07254787.1| ribonuclease III [Pseudomonas syringae pv. tomato K40] gi|302132832|ref|ZP_07258822.1| ribonuclease III [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999381|sp|Q87XG1|RNC_PSESM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28854610|gb|AAO57673.1| ribonuclease III [Pseudomonas syringae pv. tomato str. DC3000] gi|213924108|gb|EEB57684.1| ribonuclease III [Pseudomonas syringae pv. tomato T1] gi|331015601|gb|EGH95657.1| ribonuclease III [Pseudomonas syringae pv. lachrymans str. M302278PT] gi|331021566|gb|EGI01623.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027259|gb|EGI07314.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6] Length = 229 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 6/214 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 2 SVSLSRLERQLGYTFKDQELMILALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+L Sbjct: 59 FPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLD G+E A V + +L +D KT LQE+ ++ P Y+V Sbjct: 119 IGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVDI 178 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V EI+ L ++G S+R AEQ Sbjct: 179 QGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212 >gi|319760660|ref|YP_004124598.1| ribonuclease III [Candidatus Blochmannia vafer str. BVAF] gi|318039374|gb|ADV33924.1| ribonuclease III [Candidatus Blochmannia vafer str. BVAF] Length = 231 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 122/224 (54%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS+L ++ L+ ++GY F LLE ALTH S S+ + ERLEFLGD IL +++ LL+ Sbjct: 1 MSSLDFNVLQGKLGYFFCKLDLLELALTHRSFSNQH---NERLEFLGDAILNYVVANLLY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ EG++S ++LV ++T ++A+E ++ ++++ K+ SI ++ VE Sbjct: 58 HRYNCISEGDMSRIRSNLVCSKTLVRLAKEFNVGEYLKLGQGELKNGGISRESILSNTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I ++LD ++ ++ ++ A+ ++D KT LQE+ P Y V Sbjct: 118 AIIGGVFLDSNMKTVEILINNWYLCHLNAINFMNKQKDPKTRLQEYLQRHGCPLPIYYVN 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 G H FT+ +IS L P+ G S + AEQ AA LK Sbjct: 178 RIQGKAHSQMFTIFCQISQLTDPSIGYGSSIQKAEQSAAENALK 221 >gi|283850854|ref|ZP_06368140.1| ribonuclease III [Desulfovibrio sp. FW1012B] gi|283573777|gb|EFC21751.1| ribonuclease III [Desulfovibrio sp. FW1012B] Length = 239 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 113/225 (50%), Gaps = 5/225 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 ++ +++ +G+AFA LL ALTHSS ++ + ERLEFLGD +L L +S LF Sbjct: 4 SFAVVQEALGHAFARPELLTAALTHSSWANERGDALGHNERLEFLGDAVLELCVSEELFV 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A EGEL++ + LV+ + + +AR L L + + ++ +D E+ Sbjct: 64 RFPEAPEGELTLLRSQLVNEGSLAAMARRLSLEEHVLLGKGEENQGGRTRPALLSDAFEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +I A++LDGG A F+ + + + +D K+ LQE+ P Y + Sbjct: 124 VIGAIFLDGGYAAAKGFIIRAFAGSWPMRPAAPKTKDFKSRLQEYTQKAHKSRPVYSLLG 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP+HD RF V + + ++ S + AEQ+AA L+ G Sbjct: 184 SEGPEHDKRFQVRLTLPDGQVITAVEKSVKKAEQMAALRALEALG 228 >gi|119953483|ref|YP_945692.1| ribonuclease III [Borrelia turicatae 91E135] gi|119862254|gb|AAX18022.1| ribonuclease III [Borrelia turicatae 91E135] Length = 244 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 5/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 + + + F + LL +L+HSS ++ + + + ERLEFLGD +L L+I+ L+ Sbjct: 16 KLNEFLLGLHIDFNDIDLLNMSLSHSSYANEFDQKYANNERLEFLGDSVLNLIITDYLYR 75 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGELS + +VS E+ S +AREL+L ++I + + I AD +E+ Sbjct: 76 FYPEKSEGELSKARSYIVSEESLSSIARELNLGNYILLGRGEENNDGRNKKGILADAIEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + ALYLDGG FV + ++ R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 136 FVGALYLDGGFLKTLDFVIELFEVHIRLMFNRGDFKDYKSLLQEYVQKKYKISPTYKLAK 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH+ F V + ++ + G SK+ AE +AA LK Sbjct: 196 ELGPDHNKVFCVELYVNDKFISNGKGKSKKEAEMIAAEMALKN 238 >gi|307722018|ref|YP_003893158.1| RNAse III [Sulfurimonas autotrophica DSM 16294] gi|306980111|gb|ADN10146.1| RNAse III [Sulfurimonas autotrophica DSM 16294] Length = 227 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 119/224 (53%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 TLE+++GY F ++ L+ +ALTH S Y ERLEFLGD +L L++ LF F Sbjct: 4 NIKTLEEKLGYEFKDKKLIIEALTHKSYKQPY--DNERLEFLGDAVLDLVVGEYLFRKFR 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 ++ EG+LS SLV+ ++AR L L +I +S+ + +S+ ++ E+++ Sbjct: 62 TSDEGKLSKIRASLVNETGFDKLARALHLGDYILLSNAEDNNGGREKSSLLSNAFEAIMG 121 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL+ G+ ++ + RD KT LQE A+FG+TPEYKV G Sbjct: 122 AVYLEAGLGEVQRIAIDLIEKNHEEISLDSLFRDFKTTLQELTQARFGITPEYKVLASRG 181 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223 PDH F V V I A+ SK+ A+Q AA E+L +E Sbjct: 182 PDHQKEFEVGVFIEDKEYARANGKSKKIAQQEAARVAVELLNKE 225 >gi|259046634|ref|ZP_05737035.1| ribonuclease III [Granulicatella adiacens ATCC 49175] gi|259036799|gb|EEW38054.1| ribonuclease III [Granulicatella adiacens ATCC 49175] Length = 236 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L+++ +F N +LL +A+THSS ++ ++E ER+EFLGD +L L IS LF F Sbjct: 11 LKEKFDISFNNEALLMEAMTHSSYANEHKEMKGIYNERIEFLGDAVLELTISDWLFRQFP 70 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG+L+ +V ++ S +A+E L ++ + +I DV E+ I Sbjct: 71 HFQEGQLTKLRAQIVCEDSLSLLAKECSLNEYLLLGKGETLSGGREKPAILCDVFEAFIG 130 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ALYLD G+ F++ + + D KTELQE+ V Y++ GP Sbjct: 131 ALYLDKGVNEVQRFLNLVVIPKIKNGRYELITDFKTELQEYLQQNGPVHIRYELVKEEGP 190 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 HD FTV + + G +K+AAEQ+AA ++ Sbjct: 191 SHDKTFTVQLIVDGKKYKTASGKTKKAAEQMAAKLTMEEL 230 >gi|187928023|ref|YP_001898510.1| ribonuclease III [Ralstonia pickettii 12J] gi|238691793|sp|B2U981|RNC_RALPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|187724913|gb|ACD26078.1| Ribonuclease III [Ralstonia pickettii 12J] Length = 256 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 74/220 (33%), Positives = 107/220 (48%), Gaps = 6/220 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S ERLEFLGD IL ++ +L+ F Sbjct: 1 MSLDALQQRLGYRFSKPELLQQALTHRS---HSAMHNERLEFLGDSILNCAVADMLYGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L +R+ K SI AD +E++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + K + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPLYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220 G H+ +F V I L G S+RAAEQ AA L Sbjct: 178 GAAHNQQFEVECSIPKLEIRVSGSGASRRAAEQSAAKLAL 217 >gi|319946572|ref|ZP_08020806.1| ribonuclease III [Streptococcus australis ATCC 700641] gi|319746620|gb|EFV98879.1| ribonuclease III [Streptococcus australis ATCC 700641] Length = 241 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 108/213 (50%), Gaps = 8/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M AL Y+ L ++ F + LLE A TH+S ++ ++ ERLEFLGD IL L+IS Sbjct: 9 MQAL-YNLLAEKFRLTFDDTELLETAFTHTSYANEHRLLKISHNERLEFLGDAILQLVIS 67 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + S EG+LS + +V E+ + +R+ FI++ K +I Sbjct: 68 EYLFALYPSKPEGDLSKMRSMIVREESLAGFSRDCGFDQFIKLGKGEEKSGGRNRDTILG 127 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + AL LD G+E F+ + + +++G+F + D KT LQE V Sbjct: 128 DLFEAFLGALLLDKGVETVRDFIQQVMIPK-VEAGQFEQVIDYKTRLQEILQIHGDVLIT 186 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 Y+VT SGP H F V V ++G QG S Sbjct: 187 YEVTSESGPAHAKEFEVQVSVNGKIIGQGRGRS 219 >gi|261855986|ref|YP_003263269.1| ribonuclease III [Halothiobacillus neapolitanus c2] gi|261836455|gb|ACX96222.1| ribonuclease III [Halothiobacillus neapolitanus c2] Length = 243 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 86/234 (36%), Positives = 118/234 (50%), Gaps = 14/234 (5%) Query: 1 MSALRYS--------TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG 52 MSAL+ S L + IG FA+ LLE AL H S + + ERLEFLGD +L Sbjct: 1 MSALKPSSPFVTAPEKLAQHIGITFASPELLEMALRHRSAGN---MNNERLEFLGDAVLN 57 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L+I+ L+ A EGELS SLV E+ + +ARELDL S++ + K Sbjct: 58 LVIANQLYTMHSKATEGELSRWRASLVREESLAVIARELDLGSYLVLGPGELKSGGFRRD 117 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFG 170 SI AD +E+ I A+YLD G +VA + + + +++ + L +D KT LQEW Sbjct: 118 SILADALEATIGAVYLDQGFDVAQSLLVRLFERMLQDLPDAASLKDPKTRLQEWLQGSKR 177 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 P Y+VT G H F V +S A G S+R AEQ AA + + Sbjct: 178 ELPSYEVTTIRGQAHKQVFEVTCTLSDTQQTAVGRGSSRRKAEQAAAESMFEAL 231 >gi|317012480|gb|ADU83088.1| ribonuclease III [Helicobacter pylori Lithuania75] Length = 239 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 115/220 (52%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++R+SS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRISSSEEISNGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + L D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH F + + I A SK+ AEQ A + L++ Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKL 235 >gi|217032489|ref|ZP_03437981.1| hypothetical protein HPB128_156g19 [Helicobacter pylori B128] gi|298736360|ref|YP_003728886.1| ribonuclease 3 [Helicobacter pylori B8] gi|216945835|gb|EEC24456.1| hypothetical protein HPB128_156g19 [Helicobacter pylori B128] gi|298355550|emb|CBI66422.1| ribonuclease 3 [Helicobacter pylori B8] Length = 239 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 114/220 (51%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + L D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH F + + I A SK+ AEQ A L++ Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQKL 235 >gi|29654794|ref|NP_820486.1| ribonuclease III [Coxiella burnetii RSA 493] gi|161830652|ref|YP_001597345.1| ribonuclease III [Coxiella burnetii RSA 331] gi|30581027|sp|P51837|RNC_COXBU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043306|sp|A9N942|RNC_COXBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|29542062|gb|AAO91000.1| ribonuclease III [Coxiella burnetii RSA 493] gi|161762519|gb|ABX78161.1| ribonuclease III [Coxiella burnetii RSA 331] Length = 233 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 125/219 (57%), Gaps = 7/219 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + L +R+G+ F N LL+ ALTH S S ++ ERLEFLGD +LG +I++ L+ Sbjct: 4 LNKLMERLGHQFNNLELLKIALTHCS---SGADNNERLEFLGDSVLGFIIASELYQRRPQ 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EG+LS S+V+ + +Q++ +L + ++++ +K SI AD +E+++ A Sbjct: 61 AREGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGA 120 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +Y+D G+E V ++ +R K ++DAK+ LQEW A+ P Y+V +G Sbjct: 121 IYIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEV-KITGE 179 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 H FTV + GL +G++ ++R AEQ+AA L+ Sbjct: 180 AHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218 >gi|302335832|ref|YP_003801039.1| RNAse III [Olsenella uli DSM 7084] gi|301319672|gb|ADK68159.1| RNAse III [Olsenella uli DSM 7084] Length = 242 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 113/224 (50%), Gaps = 3/224 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 R +E+ +G+ F+++ L+ A+TH S SYERLEFLGD ILG +++T +F Sbjct: 6 RVVAVEQIVGHHFSDQRLITSAITHPSAVEGKPVSASYERLEFLGDSILGAMVATDMFER 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EGEL+ SLVS +T S+VA L + I R M S +V E++ Sbjct: 66 FPGMDEGELTRLKISLVSGKTLSEVAGSLGIGELIVFGESERGTGARGMHSALENVYEAI 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + ALYLD G E FV + + + K+ LQE +F PEY++ Sbjct: 126 VGALYLDAGFEATHDFVRRTLSPHMVPELAARPLSPKSRLQEVTQREFRCAPEYRLEGEE 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GP H P FT VV + G +G SK+ +E AA + L R G+ Sbjct: 186 GPAHSPTFTTVVLVDGRRVGRGSGPSKKESESQAALDALDRLGL 229 >gi|297588527|ref|ZP_06947170.1| ribonuclease III [Finegoldia magna ATCC 53516] gi|297573900|gb|EFH92621.1| ribonuclease III [Finegoldia magna ATCC 53516] Length = 238 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 111/227 (48%), Gaps = 7/227 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 + LE+++ Y F + +LL A HSS + + S ERLEFLGD +L L++S L Sbjct: 7 EKLHELEEKLDYRFTDINLLNLAFFHSSYGNENKSYKDISNERLEFLGDSVLDLIVSDFL 66 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 +N S KEG ++ + +V ++ S +A+ L+L ++ + S S+ AD Sbjct: 67 YNSKSSLKEGAMTKIRSQMVCEKSFSNMAKYLELGKYLMMGHGEFISGGSEKPSVLADTF 126 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E++ A+YLD G E A V+ +K +++ D KT LQE +YK Sbjct: 127 EAVFGAIYLDSGYESAFKIVENKFKSLFIAEIETKSSFIDYKTMLQENNQKNSRDKLKYK 186 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GPDHD +F V V L G SK+ AEQ AA L + Sbjct: 187 IVKEEGPDHDKKFYVDVYEGNLVIGSGFGSSKKHAEQDAARNALIKL 233 >gi|119383173|ref|YP_914229.1| ribonuclease III [Paracoccus denitrificans PD1222] gi|119372940|gb|ABL68533.1| RNAse III [Paracoccus denitrificans PD1222] Length = 241 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 123/221 (55%), Gaps = 1/221 (0%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +R+G+ F+ LL +ALTH SI+ + + +RLEFLGDR+LGL I+ LF+ Sbjct: 16 SADLRAFSERLGHEFSRPELLRRALTHGSIASTTRPDNQRLEFLGDRVLGLTIAEALFSA 75 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 +A EG+L+ R+N+LV ETC+ +ARE+ L +++ ++ AD +E++ Sbjct: 76 DRAATEGQLAPRYNALVKGETCAAIAREIGLGEVLKLGRSEMMSGGRRKEALLADAMEAV 135 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YLD G E A V W R RDAKT LQEWA A+ P Y R+G Sbjct: 136 IAAVYLDAGFETARGVVLGLWSDRLANVETDARDAKTALQEWAQAQGMSPPRYVQIARTG 195 Query: 183 PDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKR 222 PDH P F + V + A +KR+ EQ AA +L++ Sbjct: 196 PDHAPEFQITVRLDDGREASASGKGTKRSIEQAAATAMLEQ 236 >gi|298291621|ref|YP_003693560.1| ribonuclease III [Starkeya novella DSM 506] gi|296928132|gb|ADH88941.1| ribonuclease III [Starkeya novella DSM 506] Length = 243 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 86/208 (41%), Positives = 121/208 (58%), Gaps = 6/208 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI------SHSYQESYERLEFLGDRILGLLISTLL 59 LE +G+ FA+R+ L ALTH S S + SY+RLEFLGD +LGL++S +L Sbjct: 18 LDALEAALGHRFASRAHLRLALTHISSVTGAQGSQARVRSYQRLEFLGDHVLGLVVSDML 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + +A+EGELS R LV E C++VAR +DL +IR+ + +I ADV Sbjct: 78 YRAYPNAEEGELSRRLADLVCEEACAEVARAMDLGPYIRLGPGEDRTGGRERPAILADVA 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+++AA+YLD G E A V+K+W+ R G RD KT LQEWA + P Y++ Sbjct: 138 EAVLAAVYLDAGFEAAEAMVEKFWRPRLSTPGSSARDPKTALQEWAQGRGLPPPHYRLVE 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 RSGPDH+P F + VE+ G + S Sbjct: 198 RSGPDHNPEFRIAVELPGYTAIEATGPS 225 >gi|297202624|ref|ZP_06920021.1| ribonuclease III [Streptomyces sviceus ATCC 29083] gi|197713199|gb|EDY57233.1| ribonuclease III [Streptomyces sviceus ATCC 29083] Length = 272 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 119/223 (53%), Gaps = 6/223 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 13 ASSHTLLEGRLGYKLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLY 71 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N EG+L+ ++V++ ++V R LDL SFIR+ SI AD +E Sbjct: 72 NTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLE 131 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD G++ A V + + KS D KT LQE + PEY VT Sbjct: 132 AVIGAVYLDQGLKAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT 191 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 192 -ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 233 >gi|325915827|ref|ZP_08178126.1| RNAse III [Xanthomonas vesicatoria ATCC 35937] gi|325537948|gb|EGD09645.1| RNAse III [Xanthomonas vesicatoria ATCC 35937] Length = 226 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 80/218 (36%), Positives = 113/218 (51%), Gaps = 6/218 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ LL +AL H S + ERLEFLGD I+ LLI+ L+ + A EG L+ Sbjct: 12 IGHAFADPGLLARALRHRSAGTPH---NERLEFLGDGIVNLLIAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEPSLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188 Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 V + +A A+G S+R AEQ AAA V+ + + T Sbjct: 189 VACILEQPIARAEGQGTSRRLAEQQAAATVIAQLDVNT 226 >gi|66047178|ref|YP_237019.1| ribonuclease III [Pseudomonas syringae pv. syringae B728a] gi|257486563|ref|ZP_05640604.1| ribonuclease III [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628144|ref|ZP_06461098.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649890|ref|ZP_06481233.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. 2250] gi|289676656|ref|ZP_06497546.1| ribonuclease III [Pseudomonas syringae pv. syringae FF5] gi|298488677|ref|ZP_07006706.1| Ribonuclease III [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302186917|ref|ZP_07263590.1| ribonuclease III [Pseudomonas syringae pv. syringae 642] gi|75500898|sp|Q4ZPE1|RNC_PSEU2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|63257885|gb|AAY38981.1| Ribonuclease III [Pseudomonas syringae pv. syringae B728a] gi|298156750|gb|EFH97841.1| Ribonuclease III [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330871241|gb|EGH05950.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330898515|gb|EGH29934.1| ribonuclease III [Pseudomonas syringae pv. japonica str. M301072PT] gi|330950056|gb|EGH50316.1| ribonuclease III [Pseudomonas syringae Cit 7] gi|330973032|gb|EGH73098.1| ribonuclease III [Pseudomonas syringae pv. aceris str. M302273PT] gi|330989032|gb|EGH87135.1| ribonuclease III [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010046|gb|EGH90102.1| ribonuclease III [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 229 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 6/214 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+L Sbjct: 59 FPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLD G+E A V + +L +D KT LQE+ ++ P Y+V Sbjct: 119 IGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDI 178 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V EI+ L ++G S+R AEQ Sbjct: 179 QGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212 >gi|229825033|ref|ZP_04451102.1| hypothetical protein GCWU000182_00383 [Abiotrophia defectiva ATCC 49176] gi|229790780|gb|EEP26894.1| hypothetical protein GCWU000182_00383 [Abiotrophia defectiva ATCC 49176] Length = 247 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 112/226 (49%), Gaps = 5/226 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57 + +E+ IGYAF NR L A +HSS + + ER+EFLGD +L L+ S Sbjct: 12 KPEKAEKIEQTIGYAFKNRKFLTNAFSHSSFVNEKHLSKSDCNERMEFLGDAVLELVTSE 71 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LFN +EGEL+ LV + ARE+ L+ ++ + SI +D Sbjct: 72 FLFNGHKDMQEGELTKLRARLVCEPALAYSAREIGLSDYLLLGHGEAITGGRNRDSILSD 131 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A+YLDGG+ A F++K+ ++ K D+KT QE + T YK+ Sbjct: 132 AMEALIGAIYLDGGLTNAKEFIEKHVL-NDIEHKKLFFDSKTIFQEMVQSDNMGTISYKL 190 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD +F V I G +K+AAEQVAA + + Sbjct: 191 LAEYGPDHDKKFKEAVYIGEKEYGVGEGHTKKAAEQVAAYNGILKL 236 >gi|329121261|ref|ZP_08249888.1| ribonuclease III [Dialister micraerophilus DSM 19965] gi|327470195|gb|EGF15658.1| ribonuclease III [Dialister micraerophilus DSM 19965] Length = 239 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 112/231 (48%), Gaps = 9/231 (3%) Query: 1 MSALRYSTLEKRIG---YAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGL 53 M R LE+ I N LL ALTH+S ++ ++++ ERLEFLGD +L L Sbjct: 1 MHKNRIKELEEFIKENEIPIENHELLNIALTHTSYANEHKKNKEHDNERLEFLGDAVLDL 60 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 ++ LF + EGEL+ S V C++++ L++ ++ + K S Sbjct: 61 IVGEYLFRKYPLWSEGELTKAKASAVCKPACAEISTRLNVGKYLLLGKGEEKSGGRTRVS 120 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGV 171 I D ESLI A+YLD G EV FV K+ ++ + G + +D KT+LQE V Sbjct: 121 ILGDAFESLIGAIYLDIGYEVTFDFVIKHLEKFLDLIMQGDYDKDYKTDLQEILQQNGDV 180 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y V GPDHD + V G G+ SK+ A Q AA E ++R Sbjct: 181 EICYNVIHDEGPDHDKTIWMSVTADGKYLGSGIGKSKKQAAQRAAKEAIER 231 >gi|330466266|ref|YP_004404009.1| ribonuclease iii [Verrucosispora maris AB-18-032] gi|328809237|gb|AEB43409.1| ribonuclease iii [Verrucosispora maris AB-18-032] Length = 287 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 9/227 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 LE G + + LLE+ALTH S ++ + ERLEFLGD +LG++I+T LF++ Sbjct: 10 SIGHLEAAFGVS-MDPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHN 68 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVV 119 EG+L+ S+V+ + VAR L L ++ + SI AD + Sbjct: 69 HPDLPEGQLAKLRASVVNMRALADVARGLGPDGLGPYLLLGKGEETTGGRDKASILADTL 128 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKV 177 E+L+ A+YL G++ A + + + +S D KT LQE A PEY++ Sbjct: 129 EALLGAIYLQYGLDTAAEVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGLGVPEYRI 188 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +GPDH FT V ++G SK+ AEQ AA + Sbjct: 189 EG-AGPDHLKTFTAWVVVAGNRYGGADGRSKKEAEQRAAESAWRTLN 234 >gi|262375526|ref|ZP_06068759.1| ribonuclease III [Acinetobacter lwoffii SH145] gi|262309780|gb|EEY90910.1| ribonuclease III [Acinetobacter lwoffii SH145] Length = 232 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S L L KRIGY F LL+ ALTH S+SH + +YERLEFLGD +LG++I+ LFN Sbjct: 6 SKLNDERLAKRIGYQFKQADLLKLALTHRSVSHKH--NYERLEFLGDSLLGMIIANYLFN 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + S EG L+ +LV E ++A +L L+ + +S+ K SI AD VE+ Sbjct: 64 AYPSENEGRLTRMRATLVRQEALGKIANDLKLSQNLILSTGELKSGGHHRESILADTVEA 123 Query: 122 LIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +I A+Y+D G + V V K+++ ++ +D K+ LQE+ A+ P Y+V Sbjct: 124 IIGAIYVDCGDLTVLEPIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVV 183 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 G + F V +I+GL QG S+R AEQ AA++LK Sbjct: 184 DIQGDAPNQHFKVECQIAGLPTMQGEGASRRFAEQAVAADILK 226 >gi|317181975|dbj|BAJ59759.1| ribonuclease III [Helicobacter pylori F57] Length = 238 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ Sbjct: 13 TNSSYATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYH 70 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+LS S+VSA +++A+ + L ++RVSS SI + E+ Sbjct: 71 KFYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEA 130 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+A +YL+ G+ + L D KT LQE A+F V P Y++ Sbjct: 131 LMAGVYLEAGLAKVRKITQNLLNRTYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLK 190 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 191 EKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 234 >gi|308182848|ref|YP_003926975.1| ribonuclease III [Helicobacter pylori PeCan4] gi|308065033|gb|ADO06925.1| ribonuclease III [Helicobacter pylori PeCan4] Length = 239 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 116/220 (52%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA+ +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAQGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + L D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPIYQLLKEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH F + + I A SK+ AEQ A + L++ Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKL 235 >gi|169824545|ref|YP_001692156.1| ribonuclease III [Finegoldia magna ATCC 29328] gi|302380368|ref|ZP_07268838.1| ribonuclease III [Finegoldia magna ACS-171-V-Col3] gi|303233642|ref|ZP_07320296.1| ribonuclease III [Finegoldia magna BVS033A4] gi|167831350|dbj|BAG08266.1| ribonuclease III [Finegoldia magna ATCC 29328] gi|302311858|gb|EFK93869.1| ribonuclease III [Finegoldia magna ACS-171-V-Col3] gi|302495076|gb|EFL54828.1| ribonuclease III [Finegoldia magna BVS033A4] Length = 238 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 7/227 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 + LE+++ Y F + +LL A HSS + + S ERLEFLGD +L L++S L Sbjct: 7 EKLHELEEKLDYRFTDINLLNLAFFHSSYGNENKAYKNISNERLEFLGDSVLDLVVSDFL 66 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 +N S KEG ++ + +V ++ S +A+ L+L ++ + S S+ AD Sbjct: 67 YNSKSSLKEGAMTKIRSQMVCEKSFSNMAKYLELGKYLMMGHGEFISGGSEKPSVLADTF 126 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E++ A+YLD G E A V+ +K +++ D KT LQE K +YK Sbjct: 127 EAVFGAIYLDSGYESAFKIVENKFKSLFIAEIETKSSFIDYKTMLQENNQKKSRDKLKYK 186 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GPDHD +F V V L G SK+ AEQ AA L + Sbjct: 187 IVKEEGPDHDKKFYVDVYEGNLVIGSGFGSSKKHAEQDAARNALIKL 233 >gi|229588601|ref|YP_002870720.1| ribonuclease III [Pseudomonas fluorescens SBW25] gi|259491960|sp|C3K6Y7|RNC_PSEFS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|229360467|emb|CAY47324.1| ribonuclease III [Pseudomonas fluorescens SBW25] Length = 229 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 109/214 (50%), Gaps = 6/214 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 2 TVSLARLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+LS LV ET + +AR L ++R+ S K SI AD +E+L Sbjct: 59 FPQAREGQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEAL 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLD G+E A V + L +D KT LQE+ ++ P Y+V Sbjct: 119 IGAIYLDAGMEAAKERVTAWLTSEIESLTLVDTNKDPKTRLQEFLQSRGCELPRYEVVDI 178 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V EI+ L ++G S+R AEQ Sbjct: 179 QGEPHCRVFFVECEITLLNEKSRGQGVSRRIAEQ 212 >gi|319943505|ref|ZP_08017787.1| ribonuclease III [Lautropia mirabilis ATCC 51599] gi|319743320|gb|EFV95725.1| ribonuclease III [Lautropia mirabilis ATCC 51599] Length = 247 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 116/225 (51%), Gaps = 7/225 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++R++ LE R+GY F + +LL +ALTH S ++ ERLEFLGD +L +++LL+ Sbjct: 21 DSIRHT-LEGRLGYRFQSEALLVQALTHRS---HGRQHNERLEFLGDSVLNCAVASLLYA 76 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F + EG LS +LV + +A L L + + RK SI AD VE+ Sbjct: 77 RFADSPEGALSRLRANLVKQDPLHDIACGLSLPDALILGEGERKSGGHRRPSILADAVEA 136 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A++L+ G A V++ ++ A+ + +DAKT LQE+ P Y+V Sbjct: 137 LLGAIFLESGFAAAAGVVERLYQPLLDAIDPHELGKDAKTRLQEYLQGHRLPLPRYQVVA 196 Query: 180 RSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G HD RF V ++ +G S+R AEQVAA L+ Sbjct: 197 THGQAHDQRFDVECQLDKPKLSFEGSGESRRKAEQVAARAALEHL 241 >gi|320325568|gb|EFW81630.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. B076] gi|320327146|gb|EFW83160.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. race 4] gi|330879244|gb|EGH13393.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. race 4] Length = 229 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 112/214 (52%), Gaps = 6/214 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+LS LV ET + +AR +L ++R+ S K SI AD +E+L Sbjct: 59 FPQAREGQLSRLRARLVKGETLALLARGFNLGEYLRLGSGELKSGGFRRESILADALEAL 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLD G+E A V + +L +D KT LQE+ ++ P Y+V Sbjct: 119 IGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDI 178 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V EI+ L ++G S+R AEQ Sbjct: 179 QGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212 >gi|239944597|ref|ZP_04696534.1| ribonuclease III [Streptomyces roseosporus NRRL 15998] Length = 271 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 13 TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 71 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SFIR+ SI AD + Sbjct: 72 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 131 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G+ A V + + +S D KT LQE ++ PEY V Sbjct: 132 EAVIGAVYLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 191 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 192 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 234 >gi|17545782|ref|NP_519184.1| ribonuclease III [Ralstonia solanacearum GMI1000] gi|22654059|sp|Q8Y0I1|RNC_RALSO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|17428076|emb|CAD14765.1| probable ribonuclease III (rnase III) protein [Ralstonia solanacearum GMI1000] Length = 256 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 109/221 (49%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S ERLEFLGD IL ++ +L+ F Sbjct: 1 MSLEALQQRLGYRFSKPELLQQALTHRS---HNAMHNERLEFLGDSILNCAVADMLYGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L +R+ K SI AD +E++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLLLPDELRLGEGELKSGGFRRPSILADALEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H+ +F V I L G S+RAAEQ AA L+ Sbjct: 178 GAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQSAAKLALE 218 >gi|330811510|ref|YP_004355972.1| ribonuclease III [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379618|gb|AEA70968.1| Ribonuclease III [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 229 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 111/214 (51%), Gaps = 6/214 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 2 SVSLSRLERQLGYTFKDQDLMLLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+L Sbjct: 59 FPLAREGQLSRLRARLVKGETLAVLARGFDLGDYLRLGSGELKSGGFRRESILADALEAL 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLD G+E+A V + L +D KT LQE+ ++ P Y+V Sbjct: 119 IGAIYLDAGMEMARERVLAWLTSEIDSLTLVDTNKDPKTRLQEFLQSRSCELPRYEVVDI 178 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V E+ L ++G S+R AEQ Sbjct: 179 QGEPHCRTFFVECEVVLLNEKSRGQGVSRRIAEQ 212 >gi|307637352|gb|ADN79802.1| Ribonuclease III [Helicobacter pylori 908] gi|325995944|gb|ADZ51349.1| Ribonuclease III [Helicobacter pylori 2018] gi|325997538|gb|ADZ49746.1| Ribonuclease III [Helicobacter pylori 2017] Length = 239 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++ VSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLHVSSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + K + L D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH F + + I A SK+ AEQ A + L++ Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKL 235 >gi|86152331|ref|ZP_01070542.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94] gi|315125039|ref|YP_004067043.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840820|gb|EAQ58071.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94] gi|315018761|gb|ADT66854.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 224 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 4/222 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF+ F Sbjct: 3 NIEKLERSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +LV+ ++ +++A L+L FI +S + + SI +D +E++I Sbjct: 61 KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEKNNGGKEKPSILSDALEAIIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++L+ G E A T + ++ + + +D KT+LQE K G TP+Y+ G Sbjct: 121 AIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 181 PDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222 >gi|134095253|ref|YP_001100328.1| RNase III, ds RNA (partial match) [Herminiimonas arsenicoxydans] gi|133739156|emb|CAL62205.1| Ribonuclease III [Herminiimonas arsenicoxydans] Length = 328 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 114/221 (51%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + + L+ R+G+ F + L+++ALTH S S + ERLEFLGD IL ++++LLF+ + Sbjct: 1 MDVTLLQNRLGHTFKDAVLMQQALTHRSHSSVH---NERLEFLGDSILNCVVASLLFDRY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+L+ F+R+ K SI AD +E+L Sbjct: 58 SKIDEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G A + + ++ +DAKT LQE+ K P+Y V Sbjct: 118 GAIFLDAGFNAARDVIRALYIPILDSVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221 G H+ F + + L G S+RA EQ AA L+ Sbjct: 178 GAAHNQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALE 218 >gi|317178975|dbj|BAJ56763.1| ribonuclease III [Helicobacter pylori F30] Length = 232 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 114/220 (51%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 11 YITLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 68 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VS +++A+ + L ++RVSS SI + E+L+A Sbjct: 69 YDEGKLSKLRASIVSTHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 128 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + L D KT LQE A+F V P Y++ GP Sbjct: 129 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGP 188 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH F + + I A SK+ AEQ A + L++ Sbjct: 189 DHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 228 >gi|291277478|ref|YP_003517250.1| ribonuclease III [Helicobacter mustelae 12198] gi|290964672|emb|CBG40527.1| ribonuclease III [Helicobacter mustelae 12198] Length = 223 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 75/216 (34%), Positives = 113/216 (52%), Gaps = 4/216 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK I Y F N+ LL ALTH S + +++ ERLE+LGD +L LLI L+ F KE Sbjct: 4 LEKAINYHFKNQDLLLTALTHKSCKN--KKNNERLEYLGDAVLDLLIGEFLYQEFPEHKE 61 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV+ ++ + A+ + L FI +SS+ + SI + E+LI A+YL Sbjct: 62 GDLSKMRAALVNEQSFMRFAKAIHLQDFILISSNEETNQGREKPSILSSAFEALIGAVYL 121 Query: 129 DGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + G+E A + + + D KT LQE A F P+Y++ GPDH Sbjct: 122 EAGLERAKDITYHLLHKLYPKIDTQSLFTDYKTALQELTQAHFHEIPKYELLEEIGPDHC 181 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +F V V I A+ + SK++A+Q A ++ Sbjct: 182 KKFKVSVYIQNQEYAKAIGTSKKSAQQNCAKIAYQK 217 >gi|331002416|ref|ZP_08325934.1| ribonuclease III [Lachnospiraceae oral taxon 107 str. F0167] gi|330410232|gb|EGG89666.1| ribonuclease III [Lachnospiraceae oral taxon 107 str. F0167] Length = 232 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 68/213 (31%), Positives = 105/213 (49%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ L++ +GY + N+ LL++ALTHSS ++ +Q S ERLEFLGD +L L+ S Sbjct: 1 MNN-NLKELQELLGYEYKNKELLKQALTHSSYANEHQLGKNGSNERLEFLGDAVLELVSS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 + + EGEL+ S V A+ + L+ F+++ SI + Sbjct: 60 EFFYGVYPEKPEGELTKIRASFVCEPALVDCAKNIKLSEFLKLGKGEEHTGGRMRPSIIS 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D E++I ++YLDGG A + K+ ++ F D+KT LQE ++ EY Sbjct: 120 DTFEAIIGSIYLDGGFASAKEVILKFILNEY-ENKVFFYDSKTILQEVIQSQDSKPVEYT 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + GPDH +F V V I G G SK+ Sbjct: 179 LLSEEGPDHLKKFVVAVNIDGKRAGVGEGVSKK 211 >gi|121533802|ref|ZP_01665629.1| Ribonuclease III [Thermosinus carboxydivorans Nor1] gi|121307793|gb|EAX48708.1| Ribonuclease III [Thermosinus carboxydivorans Nor1] Length = 243 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 107/224 (47%), Gaps = 6/224 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62 L +G +F + LL +AL H+S ++ + E ERLEFLGD +L L+IS L+ + Sbjct: 13 LRDLAASLGISFNDLGLLHQALVHTSYANEVKGGVEHNERLEFLGDAVLELIISEYLYRN 72 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EGEL+ LV + +Q A L L ++ + TSI AD E++ Sbjct: 73 FPELPEGELTKARARLVCEPSLAQCASRLGLGKYLLLGKGEAVSGGRERTSILADAFEAV 132 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 I A+YLDGG+ A FV + + + D KT LQE Y+V Sbjct: 133 IGAIYLDGGVSAATNFVLNHLHEDLALIWRGDYVFYDYKTVLQEVVQQAGECKISYEVVA 192 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH+ F V V ++ G +K+ AEQ AA E L++ Sbjct: 193 EYGPDHNKTFEVSVLVNHQHLGAGSGKNKKEAEQNAAKEALQKL 236 >gi|207092393|ref|ZP_03240180.1| ribonuclease III [Helicobacter pylori HPKX_438_AG0C1] Length = 239 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 116/220 (52%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA+ +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + L D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQAQFCVIPTYQLLKEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH F + + I A SK+ AEQ A L++ Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQKL 235 >gi|77457221|ref|YP_346726.1| ribonuclease III [Pseudomonas fluorescens Pf0-1] gi|90101638|sp|Q3KHL9|RNC_PSEPF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|77381224|gb|ABA72737.1| ribonuclease III [Pseudomonas fluorescens Pf0-1] Length = 229 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 6/214 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF+ Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFDR 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+L Sbjct: 59 FPLAREGQLSRLRARLVKGETLAVLARGFDLGDYLRLGSGELKSGGFRRESILADALEAL 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLD G+EVA V + L +D KT LQE+ ++ P Y+V Sbjct: 119 IGAIYLDAGMEVARERVLAWLAGEFEGLTLVDTNKDPKTRLQEFLQSRGCELPRYEVVDI 178 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V E+ L ++G S+R AEQ Sbjct: 179 QGEPHCRTFFVECEVVLLNEKSRGQGVSRRIAEQ 212 >gi|317180453|dbj|BAJ58239.1| ribonuclease III [Helicobacter pylori F32] Length = 238 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ Sbjct: 13 TNSSYATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYH 70 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+LS S+VSA +++A+ + L ++RVSS SI + E+ Sbjct: 71 KFYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEA 130 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+A +YL+ G+ + L D KT LQE A+F V P Y++ Sbjct: 131 LMAGVYLEAGLAKVRKITQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLK 190 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 191 EKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 234 >gi|71737399|ref|YP_276084.1| ribonuclease III [Pseudomonas syringae pv. phaseolicola 1448A] gi|90101635|sp|Q48EV3|RNC_PSE14 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71557952|gb|AAZ37163.1| ribonuclease III [Pseudomonas syringae pv. phaseolicola 1448A] Length = 229 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 6/214 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+L Sbjct: 59 FPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLD G+E A V + +L +D KT LQE+ ++ P Y+V Sbjct: 119 IGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDI 178 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V EI+ L ++G S+R AEQ Sbjct: 179 HGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212 >gi|296331168|ref|ZP_06873642.1| ribonuclease III [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|296151812|gb|EFG92687.1| ribonuclease III [Bacillus subtilis subsp. spizizenii ATCC 6633] Length = 213 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 98/204 (48%), Gaps = 5/204 (2%) Query: 25 KALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +A THSS + ++ E ERLEFLGD +L L IS LF + + EG+L+ ++V Sbjct: 3 QAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVC 62 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + +A EL + + ++ ADV E+ I ALYLD G+E +F+ Sbjct: 63 EPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVESFLK 122 Query: 141 KYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 Y + D K++LQE+ + EYK+T GP H+ F +V + G Sbjct: 123 VYVFPKINDGAFSHVMDFKSQLQEYVQRDGKGSLEYKITNEKGPAHNREFEAIVSLKGEP 182 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G SK+ AEQ AA E L + Sbjct: 183 LGVGNGRSKKEAEQHAAQEALAKL 206 >gi|325478725|gb|EGC81836.1| ribonuclease III [Anaerococcus prevotii ACS-065-V-Col13] Length = 236 Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 121/224 (54%), Gaps = 6/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61 + E +IGY+F ++ L++ A THSS ++ + +S ERLEFLGD IL +++S +LF Sbjct: 10 KIEEFENKIGYSFNDKELIDVAFTHSSYTNEARGESKSNERLEFLGDSILDMIVSEILFK 69 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H+++ EG L+ + LV + ++ + D++S++ ++ ++AD E+ Sbjct: 70 HYNNKPEGWLTKTRSRLVCTSSFAKACEKFDMSSYLNFGKGEKEHGGHLKKHVKADTFEA 129 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + AA+YLD E + K +K+ A + D KT+LQE+ +AK +Y++ Sbjct: 130 VCAAIYLDSSYEKLFDILVKNYKEEALVIINDDSIFNDYKTKLQEYHNAKDKKILKYELV 189 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP+H FT+ V++ A G+ +K+ AEQ AA + Sbjct: 190 KEEGPEHAKTFTMAVKLGNRILATGVGKNKKQAEQDAAKAAYNK 233 >gi|283953747|ref|ZP_06371278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414] gi|283794788|gb|EFC33526.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414] Length = 224 Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 4/222 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF+ F Sbjct: 3 NIEKLEQNLTYEFKDKNLLMHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +LV+ ++ +++A L+L FI +S + +SI +D +E++I Sbjct: 61 KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKSSILSDALEAIIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++L+ G E A T + ++ + + +D KT+LQE K G TP+Y+ G Sbjct: 121 AIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 181 PDHLKQFEIALMLDGKEIARAIAGSKKEAQQMAAKIALEKLG 222 >gi|227890689|ref|ZP_04008494.1| ribonuclease III [Lactobacillus salivarius ATCC 11741] gi|227867627|gb|EEJ75048.1| ribonuclease III [Lactobacillus salivarius ATCC 11741] Length = 232 Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 7/230 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES------YERLEFLGDRILGLL 54 M L++ F + LL+ A TH+S + E YER+EFLGD ++ L Sbjct: 1 MIEGLQEMLKRDFDITFKDVDLLDAAFTHASYVNETPERKKKLKYYERIEFLGDAVMQLC 60 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 +S ++ H+ EG++S ++V A++ S+ A E +IR+ K S+ Sbjct: 61 VSEYIYEHYPEMPEGKMSRLRAAMVRADSFSKFAIECHFNEYIRLGKGEEKGNARQRPSL 120 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTP 173 D+ ES I ALYLD G + F+ K + L D KTELQE Sbjct: 121 LCDIFESFIGALYLDQGKDEVVRFISKVIFPKLELGWFDHMMDNKTELQEVLQQNGECKI 180 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +Y +GPD++ +T+ V ++ +G +K+AAEQ+AA + LK+ Sbjct: 181 KYNEVNVTGPDNERVYTMNVVVNNEVMGEGTGRTKKAAEQMAAYQALKKL 230 >gi|330502445|ref|YP_004379314.1| ribonuclease III [Pseudomonas mendocina NK-01] gi|328916731|gb|AEB57562.1| ribonuclease III [Pseudomonas mendocina NK-01] Length = 229 Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 77/218 (35%), Positives = 109/218 (50%), Gaps = 11/218 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS S LE+++GY+F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSP-NLSRLERKLGYSFKDQDLMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A+EG+LS LV ET + +AR +L ++R+ S K SI AD +E Sbjct: 57 ERFPQAREGQLSRLRARLVKGETLAVLARGFELGEYLRLGSGELKSGGFRRESILADALE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD G+E A V + L +D KT LQE+ ++ P Y+V Sbjct: 117 ALIGAIYLDAGMEAARERVLDWLTGELDGLTLVDTNKDPKTRLQEFLQSRACELPRYEVV 176 Query: 179 FRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213 G H F V ++ + G S+R AEQ Sbjct: 177 DVQGEPHCRTFMVECQVALLNEKTL--GQGGSRRIAEQ 212 >gi|239991059|ref|ZP_04711723.1| ribonuclease III [Streptomyces roseosporus NRRL 11379] gi|291448061|ref|ZP_06587451.1| ribonuclease III [Streptomyces roseosporus NRRL 15998] gi|291351008|gb|EFE77912.1| ribonuclease III [Streptomyces roseosporus NRRL 15998] Length = 274 Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 16 TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SFIR+ SI AD + Sbjct: 75 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G+ A V + + +S D KT LQE ++ PEY V Sbjct: 135 EAVIGAVYLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 237 >gi|156740401|ref|YP_001430530.1| ribonuclease III [Roseiflexus castenholzii DSM 13941] gi|254807896|sp|A7NGC5|RNC_ROSCS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|156231729|gb|ABU56512.1| Ribonuclease III [Roseiflexus castenholzii DSM 13941] Length = 234 Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 116/227 (51%), Gaps = 8/227 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLL 59 L R+ F+++ LL +ALTH S + + S ERLEFLGD I+ L +TL+ Sbjct: 5 LDELCARLDVTFSDQRLLWQALTHRSFLNERVDERLSLFSNERLEFLGDAIVNFLATTLV 64 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F A EG L+ +L+ ET + AR DL S ++ S+ AD Sbjct: 65 FERFPDAGEGYLTAWRAALIRTETLASFARRYDLGSHTLLARGEESSGARQRPSLLADTF 124 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+++AA+++D G++ F+ +++ L+ D K++LQ A+ G+TP Y++ Sbjct: 125 EAVVAAIFIDQGLDAVRKFLLPLFEETLATLQEQGLPVDYKSKLQARIQAERGITPRYRM 184 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 RSGP+H P FT + G SK+AAEQ AA + L R G Sbjct: 185 IERSGPEHQPEFTFEALAGDESLGTGRGASKQAAEQDAARDALDRLG 231 >gi|329936742|ref|ZP_08286449.1| ribonuclease III [Streptomyces griseoaurantiacus M045] gi|329303972|gb|EGG47855.1| ribonuclease III [Streptomyces griseoaurantiacus M045] Length = 273 Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 117/224 (52%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 23 AASSHTLLEGRLGYRLE-TALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 81 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SF+R+ SI AD + Sbjct: 82 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFVRLGRGEEGTGGRDKASILADTL 141 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS D KT LQE + PEY + Sbjct: 142 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEY-L 200 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 201 VSETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 244 >gi|326776326|ref|ZP_08235591.1| ribonuclease III [Streptomyces cf. griseus XylebKG-1] gi|326656659|gb|EGE41505.1| ribonuclease III [Streptomyces cf. griseus XylebKG-1] Length = 274 Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 16 TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SFIR+ SI AD + Sbjct: 75 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G+ A V + + +S D KT LQE ++ PEY V Sbjct: 135 EAVIGAVYLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 237 >gi|227544367|ref|ZP_03974416.1| ribonuclease III [Lactobacillus reuteri CF48-3A] gi|300909772|ref|ZP_07127233.1| ribonuclease III [Lactobacillus reuteri SD2112] gi|227185630|gb|EEI65701.1| ribonuclease III [Lactobacillus reuteri CF48-3A] gi|300893637|gb|EFK86996.1| ribonuclease III [Lactobacillus reuteri SD2112] Length = 233 Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 106/229 (46%), Gaps = 7/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L K F N +LL +A T +S + + + YER+EFLGD +L L++S Sbjct: 1 MIKELQDYLAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ F +G+L+ ++V ++ S+ A+E +IR+ + Sbjct: 61 EYIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARERPGLLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ ES I ALYLD G FV + + L G F DAKT LQE+ + E Sbjct: 121 DIFESFIGALYLDQGRPAVEKFVQRVIFPK-LDMGWFDHAVDAKTSLQEFLQRDGDIAIE 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y + SG ++DP F V V +G +G SK+ AE AA + L Sbjct: 180 YHLVEESGTENDPEFKVNVTANGDVIGEGKGSSKKHAEMQAAQQALDNM 228 >gi|315648181|ref|ZP_07901282.1| ribonuclease III [Paenibacillus vortex V453] gi|315276827|gb|EFU40170.1| ribonuclease III [Paenibacillus vortex V453] Length = 232 Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 5/210 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 L+ ++ F N LL++A TH+S + ++ + ERLEFLGD +L L +S L+ Sbjct: 4 DLKQLQHKLQIQFRNAMLLKQAFTHASYVNEHRFSQSQDNERLEFLGDAVLELTVSEFLY 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N F EGEL+ ++V + Q A LD ++ + ++ ADV E Sbjct: 64 NLFPDRPEGELTKLRAAIVCEPSLVQFAVGLDFGRYVLLGKGEEMTGGRTRPALLADVFE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179 S + ALYLD G+E F+ + +G+ + D KTELQE EY++ Sbjct: 124 SFVGALYLDQGLEAVRRFLSDHVFPSVTVNGRPQMSDYKTELQELTQHHGMGALEYRIVE 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V + +G SK+ Sbjct: 184 ERGPAHEREFVSEVYMGSECLGRGSGRSKK 213 >gi|289768866|ref|ZP_06528244.1| ribonuclease III [Streptomyces lividans TK24] gi|289699065|gb|EFD66494.1| ribonuclease III [Streptomyces lividans TK24] Length = 276 Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 28 ASSHTLLEGRLGYQLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLY 86 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+L+ ++V++ ++V R L+L SFIR+ SI AD +E Sbjct: 87 RTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLE 146 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD G++ A V + + KS D KT LQE + PEY VT Sbjct: 147 AVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT 206 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 207 -ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 248 >gi|439871|gb|AAA69690.1| ribonuclease [Coxiella burnetii] Length = 233 Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 125/219 (57%), Gaps = 7/219 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + L +R+G+ F N LL+ ALTH S S ++ ERLEFLGD +LG +I++ L+ Sbjct: 4 LNKLMERLGHQFNNLELLKIALTHCS---SGADNNERLEFLGDSVLGFIIASELYQRRPQ 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EG+LS S+V+ + +Q++ +L + ++++ +K SI AD +E+++ A Sbjct: 61 AREGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALETIVGA 120 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +Y+D G+E V ++ +R K ++DAK+ LQEW A+ P Y+V +G Sbjct: 121 IYIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEV-KITGE 179 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 H FTV + GL +G++ ++R AEQ+AA L+ Sbjct: 180 AHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218 >gi|317401886|gb|EFV82493.1| ribonuclease 3 [Achromobacter xylosoxidans C54] Length = 253 Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 111/221 (50%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +TLE R+ + F + +LLE+ALTH S ERLEFLGD +L +++ +LF + Sbjct: 1 MSLATLENRLDHHFGDPALLEQALTHRS---HGARHNERLEFLGDSVLNFVVAAMLFERY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + + +A+ L+L+ ++R+ K SI AD VE+L Sbjct: 58 SKIDEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G + A + + ++ + +DAKT LQE+ + P Y V Sbjct: 118 GAVFLDAGFDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPVYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H +F V I L S+RAAEQ AA L+ Sbjct: 178 GAAHSQQFEVECAIPALEIKVNAPGASRRAAEQSAAKLALE 218 >gi|283798076|ref|ZP_06347229.1| ribonuclease III [Clostridium sp. M62/1] gi|291074218|gb|EFE11582.1| ribonuclease III [Clostridium sp. M62/1] gi|295091753|emb|CBK77860.1| RNAse III [Clostridium cf. saccharolyticum K10] gi|295114861|emb|CBL35708.1| RNAse III [butyrate-producing bacterium SM4/1] Length = 234 Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 115/227 (50%), Gaps = 5/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + LE +I Y F ++SL+E A++HSS ++ ERLEFLGD +L ++ S Sbjct: 1 MPREHFRELEDKIHYCFKDKSLIELAMSHSSYANEKHLGKLGCNERLEFLGDAVLEIVSS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF+ F EG+L+ S+V T + A ++ L ++ + S+ + Sbjct: 61 DFLFHRFPDMPEGDLTKTRASMVCEPTLAYCAEQIGLGGYLLLGKGEDATGGRTRNSVVS 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+LI A+YLDGG A F+ Y ++ K D+KT LQE A+ Y+ Sbjct: 121 DAMEALIGAIYLDGGFSCAKEFILNYVL-NDMEHKKLFYDSKTILQEMVQARGTELLSYE 179 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GPDH+ F V I ++G +K+AAEQ+AA + + + Sbjct: 180 LLKEEGPDHNKTFEVAALIGEREVSRGAGRTKKAAEQMAAYQAILKL 226 >gi|329890079|ref|ZP_08268422.1| ribonuclease III [Brevundimonas diminuta ATCC 11568] gi|328845380|gb|EGF94944.1| ribonuclease III [Brevundimonas diminuta ATCC 11568] Length = 238 Score = 244 bits (625), Expect = 6e-63, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 127/228 (55%), Gaps = 5/228 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTL 58 A + L +R+G+ F + SLLE+ALTHSS+ ERLEFLGDR+LGLL++ Sbjct: 10 AEAVAALRQRLGHDFEDASLLERALTHSSVGEGAGPQVPADNERLEFLGDRVLGLLVADR 69 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L + SA EG+LS R ++LV C++V L + +R+S K + AD Sbjct: 70 LVRDYPSADEGQLSARLHALVDKSACARVGERLGVGDALRLSPGETKTGGRRKAGVIADA 129 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKV 177 VE+++AA+Y DGG+ A T ++ W + + K+ LQEWA + P Y+V Sbjct: 130 VEAILAAVYRDGGLIAAQTVFERAWAEELAAPPSAAVTNPKSALQEWAQGQGRPLPTYEV 189 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 R+G DH P FTV ++G PA+ S++ AE+ AA +LKRE + Sbjct: 190 VQRTGSDHAPTFTVEATVTGYEPARAQGRSRQEAEKAAAIALLKREDV 237 >gi|169350084|ref|ZP_02867022.1| hypothetical protein CLOSPI_00826 [Clostridium spiroforme DSM 1552] gi|169293297|gb|EDS75430.1| hypothetical protein CLOSPI_00826 [Clostridium spiroforme DSM 1552] Length = 226 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 4/224 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60 + + + + + + ++A TH+S ++ + YERLEFLGD +L +S LF Sbjct: 1 MELEKFLQAMEIPYHDIEIFKQAFTHTSYANENKLKNHDYERLEFLGDAVLQYHVSRYLF 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + + EG L+ + LV E+ ++ ARELDL ++I + + + S+ AD+ E Sbjct: 61 DLYPTMPEGRLTKLRSKLVREESLARFARELDLGTYIYLGAGEINNGGRDRDSVLADIFE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + A+ D G+E + K + D KT+LQE A T Y++ Sbjct: 121 AFMGAICHDCGMEYVDMMLKKTIYRHVNDVNYDDITDFKTKLQELIQADQRKTVTYELLS 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP ++P F + V + + G+ SK+ AEQ AA + L + Sbjct: 181 ATGPSNNPVFEMAVRMDDMILGTGIGSSKKRAEQQAAKDALNKL 224 >gi|302558162|ref|ZP_07310504.1| ribonuclease III [Streptomyces griseoflavus Tu4000] gi|302475780|gb|EFL38873.1| ribonuclease III [Streptomyces griseoflavus Tu4000] Length = 272 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 13 ASSHTLLEGRLGYRLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLY 71 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+L+ ++V++ ++V R L+L SFIR+ SI AD +E Sbjct: 72 RTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLE 131 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD G++ A V + + KS D KT LQE + PEY VT Sbjct: 132 AVIGAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT 191 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 192 -ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 233 >gi|117620609|ref|YP_855343.1| ribonuclease III [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562016|gb|ABK38964.1| ribonuclease III [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 223 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 77/213 (36%), Positives = 114/213 (53%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ + L+ R+G+ F ++ LL +ALTH S + ERLEFLGD IL L+I+ LF Sbjct: 1 MN-IKMNRLQSRLGHVFQDQELLTRALTHRSAGSRH---NERLEFLGDSILSLVIADDLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F A EG+LS +LV +T +++ RE DL + + K SI AD VE Sbjct: 57 HRFPQAAEGDLSRMRATLVREKTLAELGREFDLGDHLILGPGELKSGGFRRESILADTVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD +E T + ++ R +K G ++D KT LQE P Y VT Sbjct: 117 AVIGAVYLDTNLETVRTLLLGWYASRLDEIKPGIEQKDPKTRLQEILQGSRKSLPTYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H+ FTV ++ GL P G+ S+R Sbjct: 177 NVKGEAHNQEFTVQCDVEGLDGPLVGVGTSRRK 209 >gi|119503988|ref|ZP_01626069.1| ribonuclease III [marine gamma proteobacterium HTCC2080] gi|119459991|gb|EAW41085.1| ribonuclease III [marine gamma proteobacterium HTCC2080] Length = 229 Score = 244 bits (624), Expect = 7e-63, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 109/222 (49%), Gaps = 5/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +L+ R+GY+F + +L+ ALTH S + + ERLEFLGD + +I+ L+ F Sbjct: 9 QLLSLQNRLGYSFQDLQILKLALTHRSAG---RTNNERLEFLGDSFVNHVIAQRLYLQFP 65 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EG+L+ + LV + + + L + + RK SI AD VE++ Sbjct: 66 KASEGQLTRLRSKLVRGTFLAALGEKYALGECLTLGVGERKSGGRHRASILADTVEAIAG 125 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+ LD G E A + ++ + +D+KT LQEW A+ P Y + GP Sbjct: 126 AMLLDAGYENAAPVILHWFADALGELQVDGDKDSKTLLQEWLQARNLPLPSYDLVSVEGP 185 Query: 184 DHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 DH F VV I+G A G S+R AEQ AA+ + G Sbjct: 186 DHAQEFEVVCLINGQKNAFSGRGSSRRNAEQQAASVAIGELG 227 >gi|224438391|ref|ZP_03659318.1| ribonuclease III [Helicobacter cinaedi CCUG 18818] gi|313144833|ref|ZP_07807026.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818] gi|313129864|gb|EFR47481.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818] Length = 242 Score = 244 bits (624), Expect = 7e-63, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 4/223 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 LEK++GY F ++ LL +ALTH S ++Y + ERLEFLGD +L LL+ LF Sbjct: 6 PPKNAQALEKKLGYTFKDKKLLLEALTHKSCKNAY--NNERLEFLGDAVLDLLVGEFLFR 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F SAKEGELS +V+ + ++A+ LDL +F+ +S + SI ++ E+ Sbjct: 64 KFPSAKEGELSKLRACIVNEKGFMKLAKSLDLGAFLHISQSEEHNKGREKASILSNAFEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A+YL+ + V K +Q K D KT LQE A FG P Y + Sbjct: 124 LMGAIYLESELTFLKDIVLKLLEQNYAKIDLRSLFTDYKTALQELTQAIFGEIPTYTLVS 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGPDH F + + ++G+ A+ SK+ A+Q +A ++ Sbjct: 184 ESGPDHQKSFEIALSVNGVEYARAKGSSKKDAQQKSAQIAYEK 226 >gi|29829207|ref|NP_823841.1| ribonuclease III [Streptomyces avermitilis MA-4680] gi|81719920|sp|Q82JT9|RNC_STRAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|29606313|dbj|BAC70376.1| putative ribonuclease III [Streptomyces avermitilis MA-4680] Length = 276 Score = 244 bits (624), Expect = 7e-63, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 17 TASSHTLLEGRLGYKLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 75 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SFIR+ SI AD + Sbjct: 76 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 135 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G+E AG V + + KS D KT LQE + PEY V Sbjct: 136 EAVIGAVYLDQGLEAAGELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLV 195 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 196 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 238 >gi|90101636|sp|Q4KHT1|RNC_PSEF5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 229 Score = 244 bits (624), Expect = 7e-63, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 113/214 (52%), Gaps = 6/214 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ S LE+++GY+F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 2 SVSLSRLERQLGYSFKDQELMLLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+L Sbjct: 59 FPQAREGQLSRLRARLVKGETLAVLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLD G+E A V + +L +D KT LQE+ ++ P Y+V Sbjct: 119 IGAIYLDAGMETARDRVLSWLASEFESLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDI 178 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V E++ L ++G S+R AEQ Sbjct: 179 QGEPHCRTFFVECEVTLLNEKSRGQGVSRRIAEQ 212 >gi|315586658|gb|ADU41039.1| ribonuclease III [Helicobacter pylori 35A] Length = 238 Score = 244 bits (624), Expect = 7e-63, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ Sbjct: 13 TNSSYITLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYH 70 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+LS S+VSA +++A+ + L ++RVSS SI + E+ Sbjct: 71 KFYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEA 130 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+A +YL+ G+ + + L D KT LQE A+F V P Y++ Sbjct: 131 LMAGVYLEAGLAKVCKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLK 190 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 191 EKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 234 >gi|240169618|ref|ZP_04748277.1| ribonuclease III [Mycobacterium kansasii ATCC 12478] Length = 241 Score = 244 bits (624), Expect = 7e-63, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 115/230 (50%), Gaps = 10/230 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M+A R S L +G ++ LL ALTH S ++ + ERLEFLGD +LGL I+ Sbjct: 1 MTASRQSLL-DALGVDLSD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDE 58 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQ 115 L++ EG+L+ S+V+ + + VAR L L I + + +SI Sbjct: 59 LYHRHPDRSEGDLAKLRASVVNTQALADVARNLSDNGLGVHILLGRGEANTGGADKSSIL 118 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTP 173 AD +ESL+ A+YL GIEV+ + K + + D KT LQE A+ TP Sbjct: 119 ADGMESLLGAIYLQHGIEVSRKVILKLFGPLLDAAATLGAGLDWKTSLQELTAARGLGTP 178 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y VT +GPDHD FT VV + GM SK+ AEQ AA+ K Sbjct: 179 SYLVTS-TGPDHDKEFTAVVVVMDAEYGSGMGRSKKEAEQKAASAAYKAL 227 >gi|182435701|ref|YP_001823420.1| ribonuclease III [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464217|dbj|BAG18737.1| putative ribonuclease III [Streptomyces griseus subsp. griseus NBRC 13350] Length = 274 Score = 244 bits (624), Expect = 7e-63, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 16 TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SFIR+ SI AD + Sbjct: 75 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G+ A V + + +S D KT LQE ++ PEY V Sbjct: 135 EAVIGAVYLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 237 >gi|21223928|ref|NP_629707.1| ribonuclease III [Streptomyces coelicolor A3(2)] gi|256784973|ref|ZP_05523404.1| ribonuclease III [Streptomyces lividans TK24] gi|7531197|sp|Q9ZBQ7|RNC_STRCO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|4007731|emb|CAA22415.1| ribonuclease III [Streptomyces coelicolor A3(2)] Length = 272 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 24 ASSHTLLEGRLGYQLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLY 82 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+L+ ++V++ ++V R L+L SFIR+ SI AD +E Sbjct: 83 RTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLE 142 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD G++ A V + + KS D KT LQE + PEY VT Sbjct: 143 AVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT 202 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 203 -ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 244 >gi|322379758|ref|ZP_08054068.1| ribonuclease III [Helicobacter suis HS5] gi|321147829|gb|EFX42419.1| ribonuclease III [Helicobacter suis HS5] Length = 224 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 111/220 (50%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + TL+KR+GY F + LL++ALTH S ++ ERLEFLGD +L L+++ +LF F Sbjct: 2 FETLQKRLGYVFKDPLLLQQALTHRST--KAHKNNERLEFLGDAVLDLVVAEILFTRFTD 59 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG+LS SLV+ + ++A L+L I +S + SI + E+L+ A Sbjct: 60 LQEGDLSKMRASLVNEKAFFKLALSLNLQDHILISQAEANNNGHTKPSILSSAFEALMGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+E+ + L D K+ LQE A+F P Y + SGP Sbjct: 120 IYLESGLEIIKNLIQDLLDMAYPNLSPKTLFMDYKSALQELTQARFKAIPIYALKSESGP 179 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH +F + + I SK+ AEQ+ A K+ Sbjct: 180 DHAKQFEMQIFILNKLYGTCKAGSKKQAEQLCAQVAYKQL 219 >gi|227550768|ref|ZP_03980817.1| ribonuclease III [Enterococcus faecium TX1330] gi|314937654|ref|ZP_07844980.1| ribonuclease III [Enterococcus faecium TX0133a04] gi|314942847|ref|ZP_07849660.1| ribonuclease III [Enterococcus faecium TX0133C] gi|314948017|ref|ZP_07851421.1| ribonuclease III [Enterococcus faecium TX0082] gi|314950935|ref|ZP_07854004.1| ribonuclease III [Enterococcus faecium TX0133A] gi|314991417|ref|ZP_07856894.1| ribonuclease III [Enterococcus faecium TX0133B] gi|314995062|ref|ZP_07860182.1| ribonuclease III [Enterococcus faecium TX0133a01] gi|227180086|gb|EEI61058.1| ribonuclease III [Enterococcus faecium TX1330] gi|313590788|gb|EFR69633.1| ribonuclease III [Enterococcus faecium TX0133a01] gi|313593897|gb|EFR72742.1| ribonuclease III [Enterococcus faecium TX0133B] gi|313596944|gb|EFR75789.1| ribonuclease III [Enterococcus faecium TX0133A] gi|313598319|gb|EFR77164.1| ribonuclease III [Enterococcus faecium TX0133C] gi|313643031|gb|EFS07611.1| ribonuclease III [Enterococcus faecium TX0133a04] gi|313645615|gb|EFS10195.1| ribonuclease III [Enterococcus faecium TX0082] Length = 231 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 5/214 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M L++ F + +LLE+A THSS + ++ ERLEFLGD +L L++S Sbjct: 4 MDNQLTKELKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVS 63 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+L+ ++V ++ S+ A+E ++ + ++ Sbjct: 64 QYLFRLYPHLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTRPALLC 123 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD G + F++K + D KT+LQE V+ EY Sbjct: 124 DLFEAFLGALYLDQGFDTTHAFIEKVIFPKVKAGAFSHEMDHKTKLQEVLQKSGDVSIEY 183 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 ++ GP H+ F + V + G SK+ Sbjct: 184 RLINEEGPAHERVFWIEVYVDDQLIGTGQGKSKK 217 >gi|109947401|ref|YP_664629.1| ribonuclease III [Helicobacter acinonychis str. Sheeba] gi|122973320|sp|Q17XJ6|RNC_HELAH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|109714622|emb|CAJ99630.1| ribonuclease III (RNase III) [Helicobacter acinonychis str. Sheeba] Length = 234 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 117/220 (53%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 13 YITLEKALGYSFKDKHLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 70 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA+ +++AR + L ++RVSS SI + E+L+A Sbjct: 71 YDEGKLSKLRASIVSAQGFTKLARAISLQDYLRVSSSEETSKGREKPSILSSAFEALMAG 130 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G++ + + L D KT LQE A+F V P Y++ GP Sbjct: 131 VYLEAGLDKVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQAQFCVIPTYQLLKEKGP 190 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H F +V+ I A SK+ AEQ A + L++ Sbjct: 191 AHHKEFEMVLYIQNQMYATAKGKSKKEAEQQCAYQALQKL 230 >gi|87118656|ref|ZP_01074555.1| ribonuclease III [Marinomonas sp. MED121] gi|86166290|gb|EAQ67556.1| ribonuclease III [Marinomonas sp. MED121] Length = 217 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 84/210 (40%), Positives = 115/210 (54%), Gaps = 6/210 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 GY FA+ LLE ALTH S ++ ERLEFLGD IL +I+ LF+ F AKEGELS Sbjct: 2 GYFFADLGLLELALTHRSFG---GKNNERLEFLGDSILNYVIAEDLFHRFPKAKEGELSR 58 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 SLV ET +++ARE L ++++ + K SI D VE +I A++LD G++ Sbjct: 59 LRASLVKGETLAEIAREFKLGDYLKLGAGELKSGGFRRDSILEDAVEGIIGAIFLDAGMD 118 Query: 134 VAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 + +++ R A +DAKT LQE+ A+ P+Y+VT G HD F V Sbjct: 119 TCSERILSWYESRLNATSLKIVTKDAKTRLQEFLQARKHALPQYEVTEVLGEPHDQTFYV 178 Query: 192 VVEISGLA-PAQGMDCSKRAAEQVAAAEVL 220 I A P +G S+R AEQ AA + L Sbjct: 179 HCVIELFADPIEGKGNSRRIAEQKAATQAL 208 >gi|40063418|gb|AAR38229.1| ribonuclease III [uncultured marine bacterium 580] Length = 231 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 111/223 (49%), Gaps = 6/223 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LEK I Y F + LL A+TH S + ERLEFLGD IL +++ LLF Sbjct: 1 METKELKILEKSIKYKFKDDKLLALAMTHRS---HSGMNNERLEFLGDSILNFVVADLLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F+ EG+LS + LV E S++ EL + F+ + K SI AD E Sbjct: 58 KKFNDLDEGDLSRLRSQLVKEEPLSKLGNELKIGDFLNLGVGELKSSGWRRPSILADAFE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+++DGG++ A F++ + + + +D KT LQE+ A+ P Y+V Sbjct: 118 ALIGAIFIDGGMKSAYKFIEDSYADLIEKINPKEIYKDPKTILQEFLQAQKVPLPSYEVI 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220 G H+ FTV +S +G S++ AEQ AA E + Sbjct: 178 NVEGEAHNQLFTVTCVVSKFDVKVEGGGRSRKIAEQEAAKEAM 220 >gi|116492609|ref|YP_804344.1| ribonuclease III [Pediococcus pentosaceus ATCC 25745] gi|122265927|sp|Q03FX0|RNC_PEDPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116102759|gb|ABJ67902.1| RNAse III [Pediococcus pentosaceus ATCC 25745] Length = 232 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 108/227 (47%), Gaps = 7/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L + F N +LL++A T +S + + + YER+EFLGD +L L++S Sbjct: 1 MIKALEDDLSQTFDIHFNNHALLDEAFTQASYVNEHPHQELKFYERIEFLGDAVLQLIVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + +G+L+ ++V + S A+E +IR+ K +S+ Sbjct: 61 EYLFKRYPEMPQGKLTRLRAAMVCEASFSDFAKECHFDQYIRLGKGEEKSGARQRSSLLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ ES I ALYLD G FV + L GKF D K+ELQE V + Sbjct: 121 DIFESFIGALYLDQGRAAVERFVRIVIFPK-LDEGKFDHIIDHKSELQELLQKNGDVEID 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y++ GP++D FTV V A G SK+ AEQ AA + L+ Sbjct: 180 YELVSEEGPENDLIFTVSVTADHKKLATGTGHSKKVAEQNAANQALQ 226 >gi|332673509|gb|AEE70326.1| ribonuclease III [Helicobacter pylori 83] Length = 239 Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 114/221 (51%), Gaps = 4/221 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 17 SYITLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFY 74 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 75 QYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEALMA 134 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YL+ G+ + L D KT LQE A+F V P Y++ G Sbjct: 135 GVYLEAGLAKVRKITQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKG 194 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH F + + I A SK+ AEQ A + L++ Sbjct: 195 PDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 235 >gi|187918561|ref|YP_001884124.1| ribonuclease III [Borrelia hermsii DAH] gi|119861409|gb|AAX17204.1| ribonuclease III [Borrelia hermsii DAH] Length = 243 Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 5/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 + + F + LL +L+HSS ++ + + + ERLEFLGD +L L+I+ L+ Sbjct: 15 KLDEFLMGLHIDFNDIDLLNMSLSHSSYANEFDQKYANNERLEFLGDSVLNLIITDYLYK 74 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGELS + +VS E+ S +AREL+L ++I + + I AD +E+ Sbjct: 75 FYPEKSEGELSKARSYIVSEESLSSIARELNLGNYILLGRGEENNDGRNKKGIIADAIEA 134 Query: 122 LIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + ALYLDGG A FV + ++ R + + +D K+ LQE+ K+ ++P Y++ Sbjct: 135 FVGALYLDGGFLKASAFVVELFEVHIRLMFNRGDFKDYKSLLQEYVQKKYKISPNYRLAK 194 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDH+ F V + ++ + G SK+ AE +AA LK Sbjct: 195 ELGPDHNKIFCVELYVNDKFISNGKGKSKKEAEMIAAEMALK 236 >gi|325920677|ref|ZP_08182587.1| RNAse III [Xanthomonas gardneri ATCC 19865] gi|325548867|gb|EGD19811.1| RNAse III [Xanthomonas gardneri ATCC 19865] Length = 227 Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 110/214 (51%), Gaps = 6/214 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ LL +AL H S + ERLEFLGD I+ LLI+ L+ + A EG L+ Sbjct: 13 IGHAFADPGLLAQALRHRSAGTPH---NERLEFLGDGIVNLLIAEALYQRWPKADEGALT 69 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 70 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 129 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 130 ERCREVVLPWFEPSLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 189 Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + +A A+G S+R AEQ AA V+ + Sbjct: 190 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 223 >gi|327479794|gb|AEA83104.1| ribonuclease III [Pseudomonas stutzeri DSM 4166] Length = 229 Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 110/214 (51%), Gaps = 6/214 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LFNH Sbjct: 2 STSLARLERKLGYQFKDQELMLLALTHRSYA---GRNNERLEFLGDAILNFVAGEALFNH 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+LS LV ET + +AR +L +R+ S K SI AD +E+L Sbjct: 59 FPQAREGQLSRLRARLVKGETLAVLARGFELGDHLRLGSGELKSGGYRRESILADTLEAL 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLD G++VA V + L +D KT LQE+ ++ P Y+V Sbjct: 119 IGAIYLDAGMDVARERVIAWLANELQGLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDI 178 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V +++ L G S+R AEQ Sbjct: 179 QGEPHCRTFFVECQVALLNDKTHGQGASRRIAEQ 212 >gi|46579851|ref|YP_010659.1| ribonuclease III [Desulfovibrio vulgaris str. Hildenborough] gi|81404810|sp|Q72C44|RNC_DESVH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|46449267|gb|AAS95918.1| ribonuclease III [Desulfovibrio vulgaris str. Hildenborough] Length = 253 Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 110/219 (50%), Gaps = 5/219 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62 L+K IG+ F + LL A+THSS ++ E ERLEFLGD +L L +S LF Sbjct: 29 VDELQKTIGHRFGDMELLLTAMTHSSWANEQAVPVEHNERLEFLGDAVLELCVSEELFRR 88 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F SA+EG+L+ + LVS + VAREL L +R+ S+ +D +E++ Sbjct: 89 FPSAREGDLTRMRSRLVSKPSLEGVARELRLDMSLRLGKGEESQGGRERGSLLSDALEAM 148 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A++LD G A V + ++ +D K++LQE F P Y + Sbjct: 149 LGAVFLDAGYIAAKGVVMRILGPHFPEALVPVRTKDYKSQLQELTQKLFRDRPVYTLLGS 208 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 SGP+HD +F V V + + S + AEQ+AAA Sbjct: 209 SGPEHDKQFDVRVVLPDGTVFEATGPSMKRAEQMAAARA 247 >gi|56698030|ref|YP_168401.1| ribonuclease III [Ruegeria pomeroyi DSS-3] gi|81349082|sp|Q5LNK5|RNC_SILPO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56679767|gb|AAV96433.1| ribonuclease III [Ruegeria pomeroyi DSS-3] Length = 225 Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats. Identities = 90/218 (41%), Positives = 130/218 (59%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E R+GY+F LL +ALTH SIS S ++ +RLEFLGDR+LGL+++T L Sbjct: 4 SAEMKAFEARLGYSFERPELLVRALTHGSISSSTRQDNQRLEFLGDRVLGLVMATALLEA 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A EG+L+ RFN+LV ETC++VARE DL + +++ ++ D +E++ Sbjct: 64 DKDATEGQLAPRFNALVRKETCAEVAREADLGAVLKLGRSEMMSGGRRKLALLGDAMEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+Y DGG A + + W R + RDAKT LQEWA A+ P Y++ RSG Sbjct: 124 IAAVYRDGGFAAAEAVILRLWGARVHQVEADARDAKTALQEWAQARGQTPPRYELVKRSG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 PDH P FT++ E++ A+ +KR AEQ AA ++L Sbjct: 184 PDHAPVFTILAELADGRRAEATAGAKRQAEQAAARKLL 221 >gi|148544383|ref|YP_001271753.1| ribonuclease III [Lactobacillus reuteri DSM 20016] gi|184153747|ref|YP_001842088.1| ribonuclease III [Lactobacillus reuteri JCM 1112] gi|194466493|ref|ZP_03072480.1| Ribonuclease III [Lactobacillus reuteri 100-23] gi|227363192|ref|ZP_03847326.1| ribonuclease III [Lactobacillus reuteri MM2-3] gi|325682703|ref|ZP_08162219.1| ribonuclease III [Lactobacillus reuteri MM4-1A] gi|189043324|sp|A5VKP2|RNC_LACRD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|229564353|sp|B2G826|RNC_LACRJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|148531417|gb|ABQ83416.1| RNAse III [Lactobacillus reuteri DSM 20016] gi|183225091|dbj|BAG25608.1| ribonuclease III [Lactobacillus reuteri JCM 1112] gi|194453529|gb|EDX42426.1| Ribonuclease III [Lactobacillus reuteri 100-23] gi|227071798|gb|EEI10087.1| ribonuclease III [Lactobacillus reuteri MM2-3] gi|324977053|gb|EGC14004.1| ribonuclease III [Lactobacillus reuteri MM4-1A] Length = 233 Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 106/229 (46%), Gaps = 7/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L K F N +LL +A T +S + + + YER+EFLGD +L L++S Sbjct: 1 MIEELQDYLAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ F +G+L+ ++V ++ S+ A+E +IR+ + Sbjct: 61 EYIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARERPGLLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ ES I ALYLD G FV + + L G F DAKT LQE+ + E Sbjct: 121 DIFESFIGALYLDQGRPAVEKFVQRVIFPK-LDMGWFDHAVDAKTSLQEFLQRDGDIAIE 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y + SG ++DP F V V +G +G SK+ AE AA + L Sbjct: 180 YHLVEESGTENDPEFKVNVTANGDVIGEGKGSSKKHAEMQAAQQALDNM 228 >gi|254779351|ref|YP_003057456.1| ribonuclease III [Helicobacter pylori B38] gi|254001262|emb|CAX29239.1| Ribonuclease III (RNase III) [Helicobacter pylori B38] Length = 232 Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 117/220 (53%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 11 YTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 68 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 69 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 128 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + L D KT LQE A+F V P Y++ GP Sbjct: 129 VYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 188 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH F + + I A SK+ AEQ A +VL++ Sbjct: 189 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQVLQKL 228 >gi|302874772|ref|YP_003843405.1| ribonuclease III [Clostridium cellulovorans 743B] gi|307690613|ref|ZP_07633059.1| ribonuclease III [Clostridium cellulovorans 743B] gi|302577629|gb|ADL51641.1| ribonuclease III [Clostridium cellulovorans 743B] Length = 235 Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 114/220 (51%), Gaps = 4/220 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNH 62 R LE+++ +F N LL ALTHSS + + + ERLEFLGD +L L IS LF Sbjct: 7 RIRILEEQLNVSFENIDLLNTALTHSSFVNQKKHIDYNERLEFLGDSVLQLTISEYLFKE 66 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EGEL+ + +V + V R+ ++ +F+ +S TSI AD VE++ Sbjct: 67 LHGKSEGELTRLRSLIVCENSLHSVGRDWNIGNFLLMSKGEELTGGRSRTSILADAVEAV 126 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 IAA+YLD G + A F+ ++K+ K D KT LQE ++ YK+ Sbjct: 127 IAAIYLDKGYDAAREFILLHFKEVINLALDNKIVLDYKTRLQEVLQKDGEISIAYKLEKY 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP H RF V +E++ G SK+ AEQ+AA EVL Sbjct: 187 DGPPHRRRFFVNLEVANKVLGSGEGFSKKEAEQMAAKEVL 226 >gi|227530552|ref|ZP_03960601.1| ribonuclease III [Lactobacillus vaginalis ATCC 49540] gi|227349558|gb|EEJ39849.1| ribonuclease III [Lactobacillus vaginalis ATCC 49540] Length = 251 Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 105/221 (47%), Gaps = 7/221 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L K F N LL +A T +S + + + YER+EFLGD +L L++S ++ F Sbjct: 27 LAKEFDIHFTNPDLLAEAFTQASYVNEHPHQGLKFYERIEFLGDAVLELIVSEYIYKRFP 86 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G+L+ ++V ++ S+ A+E +IR+ + D+ ES I Sbjct: 87 ELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARQRPGLLCDIFESFIG 146 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYLD G FV + + L G F DAKT LQE+ V EY + SG Sbjct: 147 ALYLDQGRPAVEKFVRRVIFPK-LDLGWFDHAVDAKTSLQEFLQRDGDVDIEYHLLQESG 205 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++DP F V V G +G SK+ AE AA++ L + Sbjct: 206 TENDPEFKVNVSADGKVIGEGTGSSKKHAEMKAASQALNKL 246 >gi|69246105|ref|ZP_00603811.1| Ribonuclease III [Enterococcus faecium DO] gi|257878770|ref|ZP_05658423.1| ribonuclease III [Enterococcus faecium 1,230,933] gi|257881410|ref|ZP_05661063.1| ribonuclease III [Enterococcus faecium 1,231,502] gi|257885678|ref|ZP_05665331.1| ribonuclease III [Enterococcus faecium 1,231,501] gi|257887975|ref|ZP_05667628.1| ribonuclease III [Enterococcus faecium 1,141,733] gi|257890628|ref|ZP_05670281.1| ribonuclease III [Enterococcus faecium 1,231,410] gi|257893222|ref|ZP_05672875.1| ribonuclease III [Enterococcus faecium 1,231,408] gi|257896407|ref|ZP_05676060.1| ribonuclease III [Enterococcus faecium Com12] gi|257899381|ref|ZP_05679034.1| ribonuclease III [Enterococcus faecium Com15] gi|260558338|ref|ZP_05830534.1| ribonuclease III [Enterococcus faecium C68] gi|261207043|ref|ZP_05921732.1| ribonuclease III [Enterococcus faecium TC 6] gi|289565324|ref|ZP_06445774.1| ribonuclease III [Enterococcus faecium D344SRF] gi|293379492|ref|ZP_06625636.1| ribonuclease III [Enterococcus faecium PC4.1] gi|293556818|ref|ZP_06675379.1| ribonuclease III [Enterococcus faecium E1039] gi|293562991|ref|ZP_06677458.1| ribonuclease III [Enterococcus faecium E1162] gi|293567880|ref|ZP_06679221.1| ribonuclease III [Enterococcus faecium E1071] gi|293570730|ref|ZP_06681780.1| ribonuclease III [Enterococcus faecium E980] gi|294614479|ref|ZP_06694394.1| ribonuclease III [Enterococcus faecium E1636] gi|294618515|ref|ZP_06698077.1| ribonuclease III [Enterococcus faecium E1679] gi|294621998|ref|ZP_06701142.1| ribonuclease III [Enterococcus faecium U0317] gi|68195400|gb|EAN09847.1| Ribonuclease III [Enterococcus faecium DO] gi|257812998|gb|EEV41756.1| ribonuclease III [Enterococcus faecium 1,230,933] gi|257817068|gb|EEV44396.1| ribonuclease III [Enterococcus faecium 1,231,502] gi|257821534|gb|EEV48664.1| ribonuclease III [Enterococcus faecium 1,231,501] gi|257824029|gb|EEV50961.1| ribonuclease III [Enterococcus faecium 1,141,733] gi|257826988|gb|EEV53614.1| ribonuclease III [Enterococcus faecium 1,231,410] gi|257829601|gb|EEV56208.1| ribonuclease III [Enterococcus faecium 1,231,408] gi|257832972|gb|EEV59393.1| ribonuclease III [Enterococcus faecium Com12] gi|257837293|gb|EEV62367.1| ribonuclease III [Enterococcus faecium Com15] gi|260075512|gb|EEW63818.1| ribonuclease III [Enterococcus faecium C68] gi|260078671|gb|EEW66373.1| ribonuclease III [Enterococcus faecium TC 6] gi|289162814|gb|EFD10664.1| ribonuclease III [Enterococcus faecium D344SRF] gi|291589465|gb|EFF21272.1| ribonuclease III [Enterococcus faecium E1071] gi|291592656|gb|EFF24250.1| ribonuclease III [Enterococcus faecium E1636] gi|291595215|gb|EFF26546.1| ribonuclease III [Enterococcus faecium E1679] gi|291598425|gb|EFF29498.1| ribonuclease III [Enterococcus faecium U0317] gi|291600902|gb|EFF31193.1| ribonuclease III [Enterococcus faecium E1039] gi|291605117|gb|EFF34584.1| ribonuclease III [Enterococcus faecium E1162] gi|291609202|gb|EFF38474.1| ribonuclease III [Enterococcus faecium E980] gi|292642015|gb|EFF60181.1| ribonuclease III [Enterococcus faecium PC4.1] Length = 228 Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats. Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 5/214 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M L++ F + +LLE+A THSS + ++ ERLEFLGD +L L++S Sbjct: 1 MDNQLTKELKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+L+ ++V ++ S+ A+E ++ + ++ Sbjct: 61 QYLFRLYPHLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTRPALLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD G + F++K + D KT+LQE V+ EY Sbjct: 121 DLFEAFLGALYLDQGFDTTHAFIEKVIFPKVKAGAFSHEMDHKTKLQEVLQKSGDVSIEY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 ++ GP H+ F + V + G SK+ Sbjct: 181 RLINEEGPAHERVFWIEVYVDDQLIGTGQGKSKK 214 >gi|116333590|ref|YP_795117.1| dsRNA-specific ribonuclease [Lactobacillus brevis ATCC 367] gi|116098937|gb|ABJ64086.1| dsRNA-specific ribonuclease [Lactobacillus brevis ATCC 367] Length = 229 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 113/229 (49%), Gaps = 7/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M A L+ R F ++SLL++A T +S + + + YER+EFLGD ++ L++S Sbjct: 1 MIAGLNQELKDRFDIHFKDQSLLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVMQLVVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +F + + +G L+ ++V+ ++ + ARE +IR+ K S+ Sbjct: 61 NYIFRRYPAMPQGRLTRLRAAMVNEQSFASFARECHFDQYIRLGRGEEKAQARQRDSLLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPE 174 D+ ES I ALY+D G++ FV + L G+F D KTELQE V + Sbjct: 121 DIFESFIGALYMDQGLDKVVEFVTTVVFPK-LDEGRFDEFFDHKTELQELVQKNGPVDID 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y++ GPD+D F V V + +G SK+ AEQ AA L+ Sbjct: 180 YRLLDEEGPDNDRAFKVAVYVDDKLLGEGHGHSKKHAEQNAARHALENL 228 >gi|296130133|ref|YP_003637383.1| ribonuclease III [Cellulomonas flavigena DSM 20109] gi|296021948|gb|ADG75184.1| ribonuclease III [Cellulomonas flavigena DSM 20109] Length = 240 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 108/223 (48%), Gaps = 7/223 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 MS S LEK +G + LL ALTH S +H + ERLEFLGD +LGL+++ Sbjct: 1 MSTAAQSLLEK-LGVHL-DPELLVLALTHRSFAHEAGGIPTNERLEFLGDTVLGLVVTEH 58 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ EG+L+ + VS +QVAR LDL S++ + SI +D Sbjct: 59 LYRTHPGNSEGDLAKMRAATVSQRALAQVARSLDLGSYVLLGKGELATGGRDKDSILSDT 118 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYK 176 +E+L A+YL G+E A VD+ + + D KT LQE + + P Y+ Sbjct: 119 LEALFGAVYLSHGLEPARVLVDRLVRPTLTAAADLGAGLDWKTSLQELSASLGLGAPYYE 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 VT GPDH FT + G G +K+ AEQ AA+ Sbjct: 179 VTGE-GPDHARTFTASAVVGGEVRGTGTGPAKKIAEQEAASAA 220 >gi|318056548|ref|ZP_07975271.1| ribonuclease III [Streptomyces sp. SA3_actG] gi|318076722|ref|ZP_07984054.1| ribonuclease III [Streptomyces sp. SA3_actF] Length = 275 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 119/220 (54%), Gaps = 6/220 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 19 AASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V+R LDL +FIR+ SI AD + Sbjct: 78 YRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTL 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS + D KT LQE + PEY V Sbjct: 138 EAVIGAVYLDQGLDKAAELVHRLFDPLIEKSAELGAGLDWKTSLQELTAMEGLGVPEYLV 197 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 T GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 198 T-EEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 236 >gi|317177479|dbj|BAJ55268.1| ribonuclease III [Helicobacter pylori F16] Length = 239 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 114/221 (51%), Gaps = 4/221 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 17 SYITLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFY 74 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 75 QYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEALMA 134 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YL+ G+ + L D KT LQE A+F V P Y++ G Sbjct: 135 GVYLEAGLAKVRKITQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKG 194 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH F + + I A SK+ AEQ A + L++ Sbjct: 195 PDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 235 >gi|282861354|ref|ZP_06270419.1| ribonuclease III [Streptomyces sp. ACTE] gi|282564012|gb|EFB69549.1| ribonuclease III [Streptomyces sp. ACTE] Length = 274 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 16 TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R LDL SFIR+ SI AD + Sbjct: 75 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTL 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + +S D KT LQE ++ PEY V Sbjct: 135 EAVIGAVYLDQGLDAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 237 >gi|21230730|ref|NP_636647.1| ribonuclease III [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769274|ref|YP_244036.1| ribonuclease III [Xanthomonas campestris pv. campestris str. 8004] gi|188992425|ref|YP_001904435.1| ribonuclease III [Xanthomonas campestris pv. campestris str. B100] gi|24212269|sp|Q8PB52|RNC_XANCP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|81304767|sp|Q4USF7|RNC_XANC8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|21112323|gb|AAM40571.1| ribonuclease III [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574606|gb|AAY50016.1| ribonuclease III [Xanthomonas campestris pv. campestris str. 8004] gi|167734185|emb|CAP52393.1| Ribonuclease III [Xanthomonas campestris pv. campestris] Length = 226 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 111/214 (51%), Gaps = 6/214 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ LL +AL H S + ERLEFLGD I+ LLI+ L+ + A EG L+ Sbjct: 12 IGHAFADPGLLAQALRHRSAGTPH---NERLEFLGDGIVNLLIAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P+Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEPSLAALPVGKAEKDPKTRLQEWLQARQLPLPQYALISESGDEHAKQFH 188 Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + A A+G S+R AEQ AAA V+ + Sbjct: 189 VACILEQPAARAEGQGTSRRLAEQQAAATVIAQL 222 >gi|294626963|ref|ZP_06705554.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664535|ref|ZP_06729880.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598823|gb|EFF42969.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605697|gb|EFF49003.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 226 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 111/214 (51%), Gaps = 6/214 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ +LL +AL H S + ERLEFLGD I+ LLI+ L+ + A EG L+ Sbjct: 12 IGHAFADPALLAQALRHRSAGTPH---NERLEFLGDGIVNLLIAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYVLISESGDEHAKQFH 188 Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + +A A+G S+R AEQ AA V+ + Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222 >gi|168333987|ref|ZP_02692211.1| Ribonuclease III [Epulopiscium sp. 'N.t. morphotype B'] Length = 239 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 6/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + EK+I Y F LL+ ALTHSS ++ ++E ERLEFLGD IL L++S LF Sbjct: 11 LESFEKKIEYTFKRIELLDLALTHSSYANEHREQGVKDNERLEFLGDAILDLIVSEYLFK 70 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + ++EG+LS S+V + ++ + L+L +I + SI AD E+ Sbjct: 71 KYPESQEGDLSKFRASIVCEASLAKAGKRLELGKYILLGHGEEMGGGRDRESIIADAFEA 130 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + A+ +D E T++ K + + + K +D KT LQ + Y+V Sbjct: 131 VTGAMLIDSSYEDVKTYLAKTLIEFIKHTSATKLYKDYKTILQIESQKNVNTVIAYEVVE 190 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDH+ F V ++ +G +G +KR AEQVAA + L Sbjct: 191 EKGPDHEKEFVVELKQNGKVIGKGSGRTKRDAEQVAAHQAL 231 >gi|317009322|gb|ADU79902.1| ribonuclease III [Helicobacter pylori India7] Length = 239 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 76/217 (35%), Positives = 112/217 (51%), Gaps = 4/217 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F E Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQYDE 78 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS S+VS +++A+ + L ++RVSS SI + E+L+A +YL Sbjct: 79 GKLSKLRASIVSVHGFTKLAKAIALQDYLRVSSSEEVSNGREKPSILSSAFEALMAGVYL 138 Query: 129 DGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + G+ + + L D KT LQE A+F V P Y++ GPDH Sbjct: 139 EAGLAKVHKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGPDHH 198 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F + + I A SK+ AEQ A + L++ Sbjct: 199 KEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 235 >gi|88812349|ref|ZP_01127599.1| ribonuclease III [Nitrococcus mobilis Nb-231] gi|88790356|gb|EAR21473.1| ribonuclease III [Nitrococcus mobilis Nb-231] Length = 226 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + Y L++R+GY F+ +LL +ALTH S + + ERLEFLGD +L +++ +F+ Sbjct: 2 TVEYDRLQERLGYRFSESTLLVRALTHRSA---FGPNNERLEFLGDSVLNFVVAAEVFDR 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A+EGELS LV+ + + +AREL L +R+ K SI +D +E++ Sbjct: 59 RKQAREGELSRLRAKLVNQASLADIARELALGEALRLGGGEMKAGGQRRDSILSDTLEAI 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 + A+YLD G + + + + R + R +D KT LQE + PEY+V Sbjct: 119 VGAVYLDAGFAICREVIRRLYGNRLRELPSIRELKDPKTRLQEHLQSIRLPLPEYRVLEI 178 Query: 181 SGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223 +G H F V I G+ G+ S+R AEQ AAA +L+R Sbjct: 179 AGRAHAQTFQVECRIIGVETVTHGLANSRRQAEQKAAASMLQRL 222 >gi|320008314|gb|ADW03164.1| ribonuclease III [Streptomyces flavogriseus ATCC 33331] Length = 274 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 16 TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SFIR+ SI AD + Sbjct: 75 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G+ A V + + +S D KT LQE ++ PEY V Sbjct: 135 EAVIGAVYLDQGLGAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 237 >gi|15895025|ref|NP_348374.1| ribonuclease III [Clostridium acetobutylicum ATCC 824] gi|22654069|sp|Q97IA4|RNC_CLOAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|15024717|gb|AAK79714.1|AE007684_2 DsRNA-specific ribonuclease III [Clostridium acetobutylicum ATCC 824] Length = 230 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 72/214 (33%), Positives = 106/214 (49%), Gaps = 4/214 (1%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 ++G F N +LL ALTHSS ++ + E ERLEFLGD +L L IS F + + EG Sbjct: 13 KLGIEFQNINLLVTALTHSSYANENKNAEYNERLEFLGDAVLQLSISEYFFKKYPTISEG 72 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 EL+ + +V + + L +IR+S SI AD VE++IAA+YLD Sbjct: 73 ELTKKRALVVCGMSLHSIGERWQLGKYIRMSHGEELTGGRTRVSIIADCVEAVIAAIYLD 132 Query: 130 GGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G + A F+ + ++ + K D KT LQE +K +Y + GP H Sbjct: 133 KGFDTAKNFILREFEGTIQNAVENKIILDYKTRLQEILQSKGKTDIKYTLVRHEGPPHRR 192 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +F V + + G +K+ AEQ AA + LK Sbjct: 193 KFFVNLNFDNDVKSTGEGYTKKDAEQDAACKALK 226 >gi|330828482|ref|YP_004391434.1| ribonuclease III [Aeromonas veronii B565] gi|328803618|gb|AEB48817.1| Ribonuclease III [Aeromonas veronii B565] Length = 223 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 78/213 (36%), Positives = 114/213 (53%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ + L+ R+G+ FA+ LL +ALTH S + ERLEFLGD IL L+I+ LF Sbjct: 1 MN-IKMNRLQSRLGHVFADLELLTRALTHRSAGSRH---NERLEFLGDSILSLVIADDLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F A EG+LS +LV +T +++ RE DL + + K SI AD VE Sbjct: 57 HRFPQAAEGDLSRMRATLVREKTLAELGREFDLGDHLILGPGELKSGGFRRESILADTVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD +E T + ++ R +K G ++D KT LQE P Y VT Sbjct: 117 AVIGAVYLDTNLETVRTLLLSWYASRLEEIKPGIEQKDPKTRLQEILQGSRKSLPTYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H+ FTV ++ GL P G+ S+R Sbjct: 177 NVKGEAHNQEFTVQCDVEGLDGPLVGVGTSRRK 209 >gi|189485602|ref|YP_001956543.1| ribonuclease III [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287561|dbj|BAG14082.1| ribonuclease III [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 243 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 109/224 (48%), Gaps = 5/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTL 58 M + +K I Y F + +L ALTH S + + R+EFLGD IL +++ Sbjct: 1 MLNKNWEKFQKIIEYKFGDPKILATALTHKSYAAETVGENYNRRMEFLGDSILSAIVAET 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + EG+LS ++SA S ARE+DL I + S+ DV Sbjct: 61 LYLRYPRESEGKLSQFKAQIISAHNLSSWAREMDLGGCIYLGKSEDTKEARQRESLLCDV 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLDGG E A FV ++ + D K+ LQE + + PEYKV Sbjct: 121 FEAVIGAIYLDGGFENAKKFVLRFLNDQKEIE---ITDYKSRLQEILQSIYKELPEYKVI 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGPDH+ +F V V I +G SK+ A+Q AA + +K Sbjct: 178 KESGPDHNKKFEVAVYIKSELLGKGAGNSKKEAQQFAAKQAMKN 221 >gi|312194940|ref|YP_004015001.1| ribonuclease III [Frankia sp. EuI1c] gi|311226276|gb|ADP79131.1| ribonuclease III [Frankia sp. EuI1c] Length = 319 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 20 RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 LL++ALTH S ++ + ERLEFLGD +L L+++ L+N EG L+ + S Sbjct: 43 PDLLDRALTHRSYAYENGGLPTNERLEFLGDAVLQLVVTDALYNRHPDLPEGALAKQRAS 102 Query: 78 LVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 +V++ + VAR + + ++ + SI AD +E+LI A+YL+ G+EV Sbjct: 103 VVNSRALADVARVIGPKGIGPYLLLGKGEETTGGRDKASILADTLEALIGAVYLELGLEV 162 Query: 135 AGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 A V +Y+ ++ D KT LQE P+Y VT SGPDH RFT Sbjct: 163 AAQLVHRYFDPLLDEAAGRGAGLDWKTSLQERTAELGMGPPDYVVTD-SGPDHAKRFTAR 221 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEV 219 IS +G SK+ AEQ AA Sbjct: 222 ARISDRIYGEGEGGSKKEAEQRAAERA 248 >gi|325509162|gb|ADZ20798.1| ribonuclease III [Clostridium acetobutylicum EA 2018] Length = 230 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 72/214 (33%), Positives = 106/214 (49%), Gaps = 4/214 (1%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 ++G F N +LL ALTHSS ++ + E ERLEFLGD +L L IS F + + EG Sbjct: 13 KLGIEFQNINLLVTALTHSSYANENKNAEYNERLEFLGDAVLQLSISEYFFKKYPTISEG 72 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 EL+ + +V + + L +IR+S SI AD VE++IAA+YLD Sbjct: 73 ELTKKRALVVCGISLHSIGERWQLGKYIRMSHGEELTGGRTRVSIIADCVEAVIAAIYLD 132 Query: 130 GGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G + A F+ + ++ + K D KT LQE +K +Y + GP H Sbjct: 133 KGFDTAKNFILREFEGTIQNAVENKIILDYKTRLQEILQSKGKTDIKYTLVRHEGPPHRR 192 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +F V + + G +K+ AEQ AA + LK Sbjct: 193 KFFVNLNFDNDVKSTGEGYTKKDAEQDAACKALK 226 >gi|169335334|ref|ZP_02862527.1| hypothetical protein ANASTE_01746 [Anaerofustis stercorihominis DSM 17244] gi|169258072|gb|EDS72038.1| hypothetical protein ANASTE_01746 [Anaerofustis stercorihominis DSM 17244] Length = 227 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 112/224 (50%), Gaps = 4/224 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + LE+++GY F ++ L++ ALTHSS S+ + ++ ERLEFLGD +L L + L+ Sbjct: 1 MEIERLEQKLGYEFKDKELIKVALTHSSKSNENKTLQNNERLEFLGDAVLDLCVGAYLYK 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 KEG L+ +V A++ + +LDL FI + + +I AD E+ Sbjct: 61 TLPGKKEGVLTKLRALIVCADSLFSASDKLDLGEFIMLGKGEMHSGGKYKKNIIADCFEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++ A+YLD E T K+ G D KT LQE+ H+K Y++ Sbjct: 121 VLGAIYLDSDYEKVSTIALTLLSDVIKKAISGNLTYDYKTLLQEYIHSKNIKDFSYELVQ 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP+HD FT V I+ QG +K+ +EQ AA LK+ Sbjct: 181 IKGPEHDQIFTSKVIINNKDMGQGEGKNKKESEQHAALNTLKKL 224 >gi|153853253|ref|ZP_01994662.1| hypothetical protein DORLON_00647 [Dorea longicatena DSM 13814] gi|149754039|gb|EDM63970.1| hypothetical protein DORLON_00647 [Dorea longicatena DSM 13814] Length = 235 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 114/227 (50%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 MS LE +IGY F + +L KA+ HSS ++ E ERLEFLGD +L L+ S Sbjct: 5 MSK-DLKELEGKIGYKFDDFTLFTKAMIHSSYANEKHLPKYECNERLEFLGDAVLELVSS 63 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF++ EGEL+ S+V + AR+LDL ++ + S+ + Sbjct: 64 EFLFHNNPKLPEGELTKTRASMVCEPALAFCARDLDLGEYLLLGKGEDATGGRKRESVTS 123 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+LI A+YLDGG A F+ ++ + L++ K D+KT LQE A F Y Sbjct: 124 DAMEALIGAIYLDGGFANAKEFIHRFILK-DLENKKLFFDSKTILQEIVQANFKEVISYH 182 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GPDH+ F V V I G +K+AAEQ AA + + Sbjct: 183 LIGEEGPDHNKIFRVAVHIGEEEYGVGEGRTKKAAEQEAAYISILKL 229 >gi|315502406|ref|YP_004081293.1| ribonuclease iii [Micromonospora sp. L5] gi|315409025|gb|ADU07142.1| ribonuclease III [Micromonospora sp. L5] Length = 267 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 110/221 (49%), Gaps = 9/221 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65 LE G + + LLE+ALTH S ++ + ERLEFLGD +LG++I+T LF++ Sbjct: 13 HLEAAFGVSL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPD 71 Query: 66 AKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+L+ S+V+ + VAR L L +++ + SI AD +E+L Sbjct: 72 LPEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEEATGGRDKASILADTLEAL 131 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A+YL G++ A + + + +S D KT LQE A PEY++ Sbjct: 132 LGAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGLGVPEYRIEG- 190 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +GPDH FT V ++G SK+ AEQ AA + Sbjct: 191 TGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAESAWR 231 >gi|302865861|ref|YP_003834498.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029] gi|302568720|gb|ADL44922.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029] Length = 267 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 110/221 (49%), Gaps = 9/221 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65 LE G + + LLE+ALTH S ++ + ERLEFLGD +LG++I+T LF++ Sbjct: 13 HLEAAFGVSL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPD 71 Query: 66 AKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+L+ S+V+ + VAR L L +++ + SI AD +E+L Sbjct: 72 LPEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEEATGGRDKASILADTLEAL 131 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A+YL G++ A + + + +S D KT LQE A PEY++ Sbjct: 132 LGAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGLGVPEYRIEG- 190 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +GPDH FT V ++G SK+ AEQ AA + Sbjct: 191 TGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAESAWR 231 >gi|330877435|gb|EGH11584.1| ribonuclease III [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 229 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 111/214 (51%), Gaps = 6/214 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ S LE+++ Y F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 2 SVSLSRLERQLDYTFKDQELMILALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+L Sbjct: 59 FPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLD G+E A V + +L +D KT LQE+ ++ P Y+V Sbjct: 119 IGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVDI 178 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V EI+ L ++G S+R AEQ Sbjct: 179 QGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212 >gi|317010882|gb|ADU84629.1| ribonuclease III [Helicobacter pylori SouthAfrica7] Length = 234 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 116/220 (52%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 13 YITLEKALGYSFKDKHLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 70 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA+ +++A+ + L ++RVSS SI + E+L+A Sbjct: 71 YDEGKLSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEETSKGREKPSILSSAFEALMAG 130 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G++ + + L D KT LQE A+F V P Y++ GP Sbjct: 131 VYLEAGLDKVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQAQFCVIPTYQLLKEKGP 190 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H F + + I A SK+ AEQ A + L++ Sbjct: 191 AHHKEFEMALYIQNQMYATAKGKSKKEAEQQCAYQALQKL 230 >gi|146306507|ref|YP_001186972.1| ribonuclease III [Pseudomonas mendocina ymp] gi|189043331|sp|A4XSC4|RNC_PSEMY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|145574708|gb|ABP84240.1| RNAse III [Pseudomonas mendocina ymp] Length = 229 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 75/218 (34%), Positives = 109/218 (50%), Gaps = 11/218 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS S LE+++G++F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSP-NLSRLERKLGHSFKDQDLMILALTHRSFA---GRNNERLEFLGDAILNFVAGEALF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A+EG+LS LV ET + +AR +L ++R+ S K SI AD +E Sbjct: 57 ERFPQAREGQLSRLRARLVKGETLAVLARGFELGEYLRLGSGELKSGGFRRESILADALE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD G++ A V + L +D KT LQE+ ++ P Y+V Sbjct: 117 ALIGAIYLDAGMDAARERVLDWLSGELDGLTLIDTNKDPKTRLQEFLQSRACELPRYEVV 176 Query: 179 FRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213 G H F V ++ + G S+R AEQ Sbjct: 177 DIQGEPHCRTFMVECQVALLNEKTL--GQGGSRRIAEQ 212 >gi|224542836|ref|ZP_03683375.1| hypothetical protein CATMIT_02028 [Catenibacterium mitsuokai DSM 15897] gi|224524248|gb|EEF93353.1| hypothetical protein CATMIT_02028 [Catenibacterium mitsuokai DSM 15897] Length = 230 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 107/225 (47%), Gaps = 5/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLF 60 ++ ++ F L ++A THSS ++ + YERLEF+GD +L L +S +F Sbjct: 1 MKILDFLQKENIPFKRIGLYKEAFTHSSYANESNAHIPDYERLEFMGDAVLQLFVSEFIF 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 KEG+L+ + LV E+ ++ + EL L + + K S+ A++ E Sbjct: 61 ALHPEYKEGQLTQLRSKLVREESLARFSEELHLGELLYLGVGEEKSGGRHRESVLANIYE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 S I ALYLD G E ++K + + +F D KT+LQE + T Y V Sbjct: 121 SFIGALYLDCGKEQVIRILEKTIFKHVNEVNEFDDITDYKTKLQELVQSDDRKTVSYHVK 180 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP + P F + V + + G SK+ AEQ AA + L + Sbjct: 181 SSTGPANAPEFVIEVILDDMILGTGKGTSKKRAEQHAAKDALMKM 225 >gi|145588593|ref|YP_001155190.1| ribonuclease III [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046999|gb|ABP33626.1| RNAse III [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 263 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 9/226 (3%) Query: 1 MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIST 57 M+A + +TL++R+GY F LL +ALTH S +++ ERLEFLGD IL +++ Sbjct: 1 MNARAVIETATLQERLGYVFKKTELLNQALTHRS---HSKKNNERLEFLGDSILNCVVAD 57 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LL+ + EG+LS +LV + ++A+ L L+ +R+ K SI AD Sbjct: 58 LLYERYSDLDEGDLSRVRANLVKQQALYEIAQTLLLSDHLRLGEGELKSGGFRRPSILAD 117 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 +E++ A++LDGG + A + K + + +D KT LQE P Y Sbjct: 118 TLEAVTGAIFLDGGFDAAKDCLRKLYSVILAQVDPKTLGKDDKTLLQECLQGYQLPLPTY 177 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220 VT +G H+ +F V I L + +G S+RAAEQ AA L Sbjct: 178 NVTGTTGAAHNQQFEVECLIPSLKVSVKGDGASRRAAEQSAAKIAL 223 >gi|319779260|ref|YP_004130173.1| Ribonuclease III [Taylorella equigenitalis MCE9] gi|317109284|gb|ADU92030.1| Ribonuclease III [Taylorella equigenitalis MCE9] Length = 251 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++ Y+F + LL +ALTH S S ++ ERLEFLGD IL +++LLF Sbjct: 1 MKLDELQKKLNYSFKDIKLLNRALTHRSFSSTH---NERLEFLGDSILNFSVASLLFKKL 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ S V+ +T +++A L L I++ K SI AD VE++ Sbjct: 58 KDQAEGDLTRIRASYVNQDTLAKIANNLKLQDLIKLGEGELKSGGFKRPSILADAVEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+Y+D IE A V+ ++ + + RD+KT LQE+ AK P YKV + Sbjct: 118 GAIYIDSNIEQAQKVVESIYEPLMKNVDFSTVGRDSKTLLQEFVQAKRVPLPSYKVLNIT 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 G HD F V + AQ + S+R+AEQ AA VL+ Sbjct: 178 GAAHDQEFEVECTVELFDVSAQAVGASRRSAEQAAATLVLE 218 >gi|209884975|ref|YP_002288832.1| ribonuclease III [Oligotropha carboxidovorans OM5] gi|209873171|gb|ACI92967.1| ribonuclease III [Oligotropha carboxidovorans OM5] Length = 288 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 87/204 (42%), Positives = 120/204 (58%), Gaps = 3/204 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNH 62 +E+RIG+ F N +LL+ ALTH S S + +SY+RLEFLGD +LGL++S +L+ Sbjct: 60 LREIEQRIGHTFKNPNLLKTALTHVSALKPSQNRTDSYQRLEFLGDHVLGLIVSDMLYGA 119 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A EGE+S R LV E C VA+ L L I++ + SI D+ E++ Sbjct: 120 FPKADEGEMSKRLADLVRKEACVDVAKSLGLHENIKLGTVGAGVGARLRNSIVGDICEAV 179 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I A++LDGG + A FV W +R + + RD KT LQEWA K TP Y+ R+G Sbjct: 180 IGAIFLDGGYDAAEQFVLSNWTERMRRPVRPLRDPKTILQEWAQGKGLPTPVYREVERTG 239 Query: 183 PDHDPRFTVVVEISGLAPAQGMDC 206 P HDPRF V V++ GLA A+G+ Sbjct: 240 PHHDPRFRVAVDLPGLASAEGIGS 263 >gi|33519987|ref|NP_878819.1| ribonuclease III [Candidatus Blochmannia floridanus] gi|81666891|sp|Q7VRR0|RNC_BLOFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|33504333|emb|CAD83226.1| ribonuclease III [Candidatus Blochmannia floridanus] Length = 232 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 116/221 (52%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + + L+K++GY F LL +ALTH S S+ + ERLEFLGD IL I+ +L++ + Sbjct: 7 IEINLLQKKLGYFFHTVDLLLRALTHRSFSNKH---NERLEFLGDSILNYSITNILYHRY 63 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG++S +SLV + T ++A+E L + +++ K+ SI AD VE++I Sbjct: 64 NHMDEGDMSRIRSSLVCSRTLVELAKEFKLGNCLKLGQGELKNKGYNRESILADTVEAII 123 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 ++LD I+ + +++ R + ++D KT LQE+ P Y + Sbjct: 124 GGIFLDSNIKTIEMLIAFWYQFRLNKIDLEDKQKDPKTRLQEYLQHHHLPLPIYCINQVQ 183 Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221 G HD F + ++S L + G S+R AEQ AA LK Sbjct: 184 GQAHDQIFIMNCQVSSLKYSVMGRGSSRRKAEQDAAENALK 224 >gi|257866576|ref|ZP_05646229.1| ribonuclease III [Enterococcus casseliflavus EC30] gi|257872908|ref|ZP_05652561.1| ribonuclease III [Enterococcus casseliflavus EC10] gi|257876180|ref|ZP_05655833.1| ribonuclease III [Enterococcus casseliflavus EC20] gi|325567330|ref|ZP_08143997.1| ribonuclease III [Enterococcus casseliflavus ATCC 12755] gi|257800534|gb|EEV29562.1| ribonuclease III [Enterococcus casseliflavus EC30] gi|257807072|gb|EEV35894.1| ribonuclease III [Enterococcus casseliflavus EC10] gi|257810346|gb|EEV39166.1| ribonuclease III [Enterococcus casseliflavus EC20] gi|325158763|gb|EGC70909.1| ribonuclease III [Enterococcus casseliflavus ATCC 12755] Length = 230 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 5/218 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M+ L+++ F + LLE+A THSS + ++ ERLEFLGD +L L++S Sbjct: 1 MNTQLTKELKEKFDIVFHDVDLLEQAFTHSSYVNEHRNLHLSDNERLEFLGDAVLELIVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ EG+L+ ++V ++ S A++ +IR+ S+ Sbjct: 61 RYLYRELPDLPEGKLTKLRAAIVREDSLSMFAKDCRFDEYIRLGKGEENSGGRKRPSLLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD G+E F+ K + D KT LQE V+ Y Sbjct: 121 DLFEAFLGALYLDQGLESVSGFLTKVVFPKVKAGAFSHEMDHKTRLQEVLQRGGDVSINY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ +GP H+ F V +G SK+ +EQ Sbjct: 181 RLIKEAGPAHERIFWTEVYCDDTLIGKGQGKSKKLSEQ 218 >gi|188577282|ref|YP_001914211.1| ribonuclease III [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521734|gb|ACD59679.1| ribonuclease III [Xanthomonas oryzae pv. oryzae PXO99A] Length = 226 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 110/214 (51%), Gaps = 6/214 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ LL +AL H S + ERLEFLGD I+ LL++ L+ + A EG L+ Sbjct: 12 IGHAFADPDLLAQALRHRSAGTPH---NERLEFLGDGIVNLLVAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGEWKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188 Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + +A A+G S+R AEQ AA V+ + Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222 >gi|145300361|ref|YP_001143202.1| ribonuclease III [Aeromonas salmonicida subsp. salmonicida A449] gi|142853133|gb|ABO91454.1| ribonuclease III [Aeromonas salmonicida subsp. salmonicida A449] Length = 223 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 76/213 (35%), Positives = 113/213 (53%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ + L+ R+G+ F ++ LL +ALTH S + ERLEFLGD IL L+I+ LF Sbjct: 1 MN-IKMNRLQSRLGHVFHDKELLTRALTHRSAGSRH---NERLEFLGDSILSLVIADALF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F A EG+LS +LV +T +++ RE DL + + K SI AD VE Sbjct: 57 HRFPQAAEGDLSRMRATLVREKTLAELGREFDLGDDLILGPGELKSGGFRRESILADTVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD +E + ++ R +K G ++D KT LQE P Y VT Sbjct: 117 AVIGAVYLDTDLEAVRVLLLSWYASRLDEIKPGIEQKDPKTRLQEILQGSRKSLPTYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H+ FTV ++ GL P G+ S+R Sbjct: 177 NVKGEAHNQEFTVQCDVEGLDGPLVGVGTSRRK 209 >gi|300854469|ref|YP_003779453.1| dsRNA-specific ribonuclease [Clostridium ljungdahlii DSM 13528] gi|300434584|gb|ADK14351.1| dsRNA-specific ribonuclease [Clostridium ljungdahlii DSM 13528] Length = 235 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 4/224 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 LEK+ +F+N+ ++E ALTHSS ++ + + ERLEFLGD +L L IS LF + Sbjct: 7 IELLEKKFNMSFSNKEIIEVALTHSSYANGRKNIKFNERLEFLGDSVLQLCISEYLFLKY 66 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S EGEL+ + + +V + VA++ +L +I++S TSI AD VE++I Sbjct: 67 KSKPEGELTKKRSLIVCENSLYHVAKKWNLGKYIKMSKGEEITGGRERTSILADCVEAII 126 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YL+ G E G F+ + ++ + + D KT+LQE V+ EY + Sbjct: 127 AAIYLNFGYENTGKFIIENFQDIIENAIKNRIIMDYKTKLQETLQKDGDVSIEYNLVKYE 186 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GP H +F V G+ SK+ +EQ AA + L + + Sbjct: 187 GPPHRRKFYTEVCTEKNVLGSGVGYSKKESEQNAAQDALMKLNV 230 >gi|109899454|ref|YP_662709.1| ribonuclease III [Pseudoalteromonas atlantica T6c] gi|109701735|gb|ABG41655.1| RNAse III [Pseudoalteromonas atlantica T6c] Length = 227 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 115/221 (52%), Gaps = 6/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y L ++GY F + L ALTH S+ ++ ERLEFLGD +LGL+I+ LF F Sbjct: 7 YKPLYTKLGYEFQDPKNLTVALTHRSVGANH---NERLEFLGDAVLGLVIAKALFERFPK 63 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG L+ +SLV +T ++VARE L + + K SI AD VE++I A Sbjct: 64 QPEGNLTRMRSSLVKGDTLAEVAREFSLGDLLLLGPGELKSGGHRRDSILADAVEAIIGA 123 Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +Y + G++ + ++ +R AL +D KT LQE+ + PEY+V SG Sbjct: 124 IYQEVGMQGCEPLILAWFAKRIDALNPDATPKDDKTRLQEYLQGRQLPLPEYEVIDISGK 183 Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 HD FTV +SGL P G S+R AEQ A + L+ Sbjct: 184 SHDQTFTVQCTVSGLSKPIIGRGKSRRRAEQRTAKQALENL 224 >gi|332284936|ref|YP_004416847.1| hypothetical protein PT7_1683 [Pusillimonas sp. T7-7] gi|330428889|gb|AEC20223.1| hypothetical protein PT7_1683 [Pusillimonas sp. T7-7] Length = 252 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 76/218 (34%), Positives = 114/218 (52%), Gaps = 8/218 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +TL+ + Y F + SLLE+ALTH S S + ERLEFLGD +L ++++LLF F Sbjct: 5 NTLQAALDYQFGDASLLEQALTHRSHSGPH---NERLEFLGDSVLNFVVASLLFVRFPKI 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS +LV + +A L+L+ ++R+ K SI AD +E+L AA+ Sbjct: 62 DEGDLSRLRANLVKQAALADIAGRLNLSQYLRLGEGELKSGGFRRPSILADALEALFAAV 121 Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLDGG + A + + ++ + + +D KT LQE A+ P Y V G Sbjct: 122 YLDGGFDAAQQVIQRQYETILDNVDAKTLGKDPKTLLQELLQARKLDLPAYTVVATHGAA 181 Query: 185 HDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVL 220 H+ F V +I + + G S+RAAEQ AA + Sbjct: 182 HNQLFEVECQIPVLDIKVSAG-GASRRAAEQSAAELAI 218 >gi|260583707|ref|ZP_05851455.1| ribonuclease III [Granulicatella elegans ATCC 700633] gi|260158333|gb|EEW93401.1| ribonuclease III [Granulicatella elegans ATCC 700633] Length = 234 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 7/225 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62 + K F N + L++ALTHSS ++ +++ ER+EFLGD +L L IS L+ Sbjct: 9 EKIAKEFQIQFKNENYLKEALTHSSYANEHKDCKGIYNERIEFLGDAVLELFISNWLYRQ 68 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + KEGEL+ +V E+ S +A+E +L ++ + R ++ DV E+ Sbjct: 69 MPTKKEGELTKLRAQIVCEESLSTLAKECELDKYLLLGKGERASKGHENPAVLCDVFEAF 128 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + A+YLD G E A F+ + + +K G+F D KTELQE+ V Y++ Sbjct: 129 VGAIYLDQGFEGASQFLTQVIISK-IKDGRFTLVGDFKTELQEYFQRNGNVNIRYELLKE 187 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GP H +TV V ++ G +K+AAEQ++A L++ + Sbjct: 188 EGPSHARYYTVQVHVNDKGYEIGEGKTKKAAEQLSARRTLEKLNV 232 >gi|227484649|ref|ZP_03914965.1| ribonuclease III [Anaerococcus lactolyticus ATCC 51172] gi|227237369|gb|EEI87384.1| ribonuclease III [Anaerococcus lactolyticus ATCC 51172] Length = 237 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 6/224 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60 + EK IGY F +++L++ A THSS ++ + +S ERLEFLGD IL +++S LF Sbjct: 9 EKIEEFEKSIGYTFNDKTLIDVAFTHSSFTNEARIKTKSNERLEFLGDTILDMVVSEYLF 68 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ EG L+ + +V ++ ++ + DL ++R +K ++AD E Sbjct: 69 KNYKEKPEGWLTRTRSRIVCTDSFAKACEKFDLTKYLRFGMGEKKQGGKLKKHVKADTFE 128 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 + AA+YLD + F+ + + + D KT LQE+ +A Y++ Sbjct: 129 AFCAAIYLDSSYQRLFEFLKSNYSEEVLQIINDDSLFLDYKTRLQEYYNAHSKKNLSYEL 188 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP+HD FT+ V + A AQG +K+ AEQ+AA + Sbjct: 189 IKEVGPEHDKTFTMEVRLGNRALAQGEGKNKKTAEQMAAKAAYE 232 >gi|238063283|ref|ZP_04607992.1| ribonuclease III [Micromonospora sp. ATCC 39149] gi|237885094|gb|EEP73922.1| ribonuclease III [Micromonospora sp. ATCC 39149] Length = 296 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 110/225 (48%), Gaps = 9/225 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 LE G + + LLE+ALTH S ++ + ERLEFLGD +LG++I+T LF++ Sbjct: 11 IGHLEAAFGVSL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNH 69 Query: 64 DSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+L+ S+V+ + VAR L L +++ + SI AD +E Sbjct: 70 PDLPEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEESTGGRDKASILADTLE 129 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVT 178 +L+ A+YL G++ A + + + +S D KT LQE A PEY++ Sbjct: 130 ALLGAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGLGVPEYRIE 189 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GPDH FT V ++G SK+ AEQ AA + Sbjct: 190 G-TGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAESAWREL 233 >gi|120602683|ref|YP_967083.1| ribonuclease III [Desulfovibrio vulgaris DP4] gi|120562912|gb|ABM28656.1| RNAse III [Desulfovibrio vulgaris DP4] gi|311234148|gb|ADP87002.1| ribonuclease III [Desulfovibrio vulgaris RCH1] Length = 228 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 112/224 (50%), Gaps = 7/224 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57 M + L+K IG+ F + LL A+THSS ++ E ERLEFLGD +L L +S Sbjct: 1 MKPVD--ELQKTIGHRFGDMELLLTAMTHSSWANEQAVPVEHNERLEFLGDAVLELCVSE 58 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF F SA+EG+L+ + LVS + VAREL L +R+ S+ +D Sbjct: 59 ELFRRFPSAREGDLTRMRSRLVSKPSLEGVARELRLDMSLRLGKGEESQGGRERGSLLSD 118 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEY 175 +E+++ A++LD G A V + ++ +D K++LQE F P Y Sbjct: 119 ALEAMLGAVFLDAGYIAAKGVVMRILGPHFPEALVPVRTKDYKSQLQELTQKLFRDRPVY 178 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + SGP+HD +F V V + + S + AEQ+AAA Sbjct: 179 TLLGSSGPEHDKQFDVRVVLPDGTVFEATGPSMKRAEQMAAARA 222 >gi|330836489|ref|YP_004411130.1| RNAse III [Spirochaeta coccoides DSM 17374] gi|329748392|gb|AEC01748.1| RNAse III [Spirochaeta coccoides DSM 17374] Length = 256 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 108/220 (49%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 +K G F + LL A TH S + + ++ ERLEFLGD +LG ++S LF + + Sbjct: 28 FQKNAGIKFHSLELLNLAFTHRSFFNESRHEVDNNERLEFLGDSVLGFMVSEWLFLNLPA 87 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+ S + +V+ ++ +++A L + F+ + + +I AD +E++ AA Sbjct: 88 RHEGDFSKIRSYVVNEDSLAEIALSLHVDRFLIIGKGEEMNGGRTKKTILADCMEAIFAA 147 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD G++ + ++ + + ++D KT LQE ++ P Y++ SGP Sbjct: 148 YYLDAGLKPVQELILRHLVPAIMVVLDDRHKKDYKTLLQEIIQKRYHKYPVYELLRTSGP 207 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +HD F V V + G +K+ AEQ AA + Sbjct: 208 EHDRTFWVQVNVVGNIFGPASGANKKEAEQNAACAAYEAL 247 >gi|309789990|ref|ZP_07684566.1| ribonuclease III [Oscillochloris trichoides DG6] gi|308228010|gb|EFO81662.1| ribonuclease III [Oscillochloris trichoides DG6] Length = 235 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 72/209 (34%), Positives = 111/209 (53%), Gaps = 8/209 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSY------QESYERLEFLGDRILGLLISTLLFN 61 L++++G F + L +A H S H + +ES ERLEFLGD +L L + L+ Sbjct: 3 ELQRQLGIRFNDEELFTRAFVHRSFIHEHPERNRPRESNERLEFLGDAVLNFLSAAWLYA 62 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +F EGEL+ +LV T + AR LDL I++S + ++ ADV E+ Sbjct: 63 NFPDRTEGELTHLRAALVKTNTLAGFARSLDLGRHIKISRGEDTPIARNRPALLADVFEA 122 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A+YLD G++ TF+ +++ + + SG D +T LQE A ++F TP Y++ Sbjct: 123 LLGAIYLDQGLDAVRTFITPFFEHQIVVVLSGSDEVDYRTRLQEQAQSRFNRTPTYRMVD 182 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 SGPDH FT+ V I + G+ SK Sbjct: 183 VSGPDHQREFTMEVVIDEVRYGVGVGTSK 211 >gi|90412086|ref|ZP_01220093.1| ribonuclease III [Photobacterium profundum 3TCK] gi|90327064|gb|EAS43443.1| ribonuclease III [Photobacterium profundum 3TCK] Length = 224 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 6/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L++++GY F + L+ +LTH S + ++ ERLEFLGD IL +I+ L++ F Sbjct: 6 NRLQRKLGYQFNSTELMTLSLTHRSANGTH---NERLEFLGDSILSFVIADDLYHRFPHV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV +T +++ RE +L ++ + K SI AD VE++I A+ Sbjct: 63 DEGDMSRMRATLVRGKTLAELGREFELGDYLLLGPGELKSGGFRRDSILADCVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD E + +++ R ++ G ++D KT LQE + P Y VT G Sbjct: 123 YLDSDTEQVRKVILSWYQSRLETIQPGINQKDPKTRLQECLQGRRLALPAYTVTKVHGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210 H+ FTV E++GL P G S+R Sbjct: 183 HNQEFTVQCEVTGLDKPVIGKGSSRRK 209 >gi|254519218|ref|ZP_05131274.1| ribonuclease III [Clostridium sp. 7_2_43FAA] gi|226912967|gb|EEH98168.1| ribonuclease III [Clostridium sp. 7_2_43FAA] Length = 242 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 116/227 (51%), Gaps = 4/227 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M+ +E IG F LL+ ALTHSS ++ ++ E ER EFLGD IL L I+ Sbjct: 11 MAKFNIKEVEDSIGLTFNEPKLLKTALTHSSYANQHKDQEYNERFEFLGDSILQLCITEY 70 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF ++ + EGEL+ + +V + ++ ++L+L FIR+S SI AD Sbjct: 71 LFLNYKNKSEGELTKIRSLIVCENSLYEIGKKLNLGYFIRISRGEELTGGRERVSIIADA 130 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYK 176 VE+L+A +YLD G+E ++ ++K+ K+ D KT+LQE V+ Y+ Sbjct: 131 VEALLAGIYLDKGLEFVKDYIIGHFKEIIDKAINNDIVLDYKTKLQEEMQKSGEVSIIYE 190 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GP H +F V I +G SK+ +EQ AA E L+ Sbjct: 191 LLKYEGPPHRRKFFTSVLIEDRELGKGEGYSKKESEQNAAKEALRNL 237 >gi|326382852|ref|ZP_08204542.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395] gi|326198442|gb|EGD55626.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395] Length = 234 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 111/222 (50%), Gaps = 9/222 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L +G + LL ALTH S ++ + ERLEFLGD +LG++++ L+ F Sbjct: 10 LTDVLGVTIDD-ELLTLALTHRSYAYENGGLPTNERLEFLGDAVLGVVVTERLYVGFPDR 68 Query: 67 KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EGEL+ S+V+ + VAR L L + +R+ SI AD +ESL Sbjct: 69 PEGELAKIRASVVNMHALADVARGLGEGGLGAHLRLGRGEELTGGRDKASILADGLESLF 128 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD GIEVA T + ++ ++SG+ D KT LQE + + P+Y+ + Sbjct: 129 GAIFLDHGIEVAKTVIMNLFEPIIVRSGRLGAGLDWKTSLQELSAERSLGQPQYQ-ISST 187 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH+ FT V + G G +K+ AEQ AA K Sbjct: 188 GPDHNKEFTAVAVVGGDELGAGTGKTKKEAEQRAAELAWKAL 229 >gi|320161647|ref|YP_004174872.1| ribonuclease III [Anaerolinea thermophila UNI-1] gi|319995501|dbj|BAJ64272.1| ribonuclease III [Anaerolinea thermophila UNI-1] Length = 237 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 69/212 (32%), Positives = 108/212 (50%), Gaps = 5/212 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59 A R+G +F + LL +ALTH S + + E ERLEFLGD +L ++ L Sbjct: 7 AESPQEFANRLGLSFKSFFLLSRALTHRSYLNEHPEAIEDNERLEFLGDAVLDFVVGAWL 66 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 +N + EG+L+ + LVS E S+ AR++DL +R+ + ++ D Sbjct: 67 YNRYPDMPEGDLTRMRSVLVSTEQLSEFARKVDLGRALRLGKGETQAGGRDRPALLCDAF 126 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD GIE F++ ++ + + + D K+ LQEWA + P Y V Sbjct: 127 EAVIGAIYLDSGIEGVRRFIEPMLEKAADEILARQTIEDPKSMLQEWAQGQGFQAPRYIV 186 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SGP+H +F V V I+G G+ SK+ Sbjct: 187 RSSSGPEHSKQFEVDVLINGQIYGSGIGSSKQ 218 >gi|299067031|emb|CBJ38226.1| Ribonuclease III (RNase III) [Ralstonia solanacearum CMR15] Length = 256 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 108/221 (48%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+ Y F+ LL++ALTH S ERLEFLGD IL ++ +L+ F Sbjct: 1 MSLEALQQRLDYRFSKPELLQQALTHRS---HNAMHNERLEFLGDSILNCAVADMLYGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L +R+ K SI AD +E++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLLLPDELRLGEGELKSGGFRRPSILADALEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H+ +F V I L G S+RAAEQ AA L+ Sbjct: 178 GAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQSAAKLALE 218 >gi|167755900|ref|ZP_02428027.1| hypothetical protein CLORAM_01417 [Clostridium ramosum DSM 1402] gi|237734864|ref|ZP_04565345.1| ribonuclease III [Mollicutes bacterium D7] gi|167704839|gb|EDS19418.1| hypothetical protein CLORAM_01417 [Clostridium ramosum DSM 1402] gi|229382192|gb|EEO32283.1| ribonuclease III [Coprobacillus sp. D7] Length = 226 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 105/224 (46%), Gaps = 4/224 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60 + +++ + N + ++A TH S ++ + YERLEFLGD +L +S +F Sbjct: 1 MELEQFLQKMEIPYQNIEIFKEAFTHPSYANENKMKNHDYERLEFLGDAVLQYHVSRHIF 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG L+ LV E+ ++ ARELDL I + + + S+ AD+ E Sbjct: 61 DLYPELPEGRLTKLRAKLVREESLARFARELDLGPLIYLGAGELNNGGRDRDSVLADIFE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + A+ D G E +D + D KT+LQE A T Y + Sbjct: 121 AFMGAICHDCGPEYVEKMLDITIYKHVEDVNYDEITDFKTKLQELIQADQRKTVTYDLIS 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP ++P F + V++ + G+ SK+ AEQ AA + L + Sbjct: 181 SSGPSNNPVFEMAVKMDEMVLGVGVGSSKKRAEQQAAKDALNKL 224 >gi|54310187|ref|YP_131207.1| ribonuclease III [Photobacterium profundum SS9] gi|81615006|sp|Q6LMS2|RNC_PHOPR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|46914628|emb|CAG21405.1| putative ribonuclease III [Photobacterium profundum SS9] Length = 224 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 6/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L++R+GY F + L+ +LTH S + + ERLEFLGD IL +I+ L++ F Sbjct: 6 NRLQRRLGYQFNSSELMTLSLTHRSANGKH---NERLEFLGDSILSFVIADDLYHRFPHV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV +T +++ RE +L ++ + K SI AD VE++I A+ Sbjct: 63 DEGDMSRMRATLVRGKTLAELGREFELGDYLLLGPGELKSGGFRRDSILADCVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD E + +++ R ++ G ++D KT LQE + P Y VT G Sbjct: 123 YLDSDTEQVRKVILSWYQSRLETIQPGINQKDPKTRLQECLQGRRLALPAYTVTKVHGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210 H+ FTV E++GL P G S+R Sbjct: 183 HNQEFTVQCEVTGLDKPVIGKGSSRRK 209 >gi|291454392|ref|ZP_06593782.1| ribonuclease III [Streptomyces albus J1074] gi|291357341|gb|EFE84243.1| ribonuclease III [Streptomyces albus J1074] Length = 265 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 121/224 (54%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 18 TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V+R L+L SFIR+ SI AD + Sbjct: 77 YRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLELGSFIRLGRGEEGTGGRDKASILADTL 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G+E AG V + + KS D KT LQE + PEY V Sbjct: 137 EAVIGAVYLDQGLEAAGELVHRLFDPLIEKSSSLGAGLDWKTSLQELTATEGLGVPEYLV 196 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 197 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 239 >gi|333024194|ref|ZP_08452258.1| putative ribonuclease III [Streptomyces sp. Tu6071] gi|332744046|gb|EGJ74487.1| putative ribonuclease III [Streptomyces sp. Tu6071] Length = 314 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 119/220 (54%), Gaps = 6/220 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 58 AASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 116 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V+R LDL +FIR+ SI AD + Sbjct: 117 YRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTL 176 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS + D KT LQE + PEY V Sbjct: 177 EAVIGAVYLDQGLDKAAELVHRLFDPLIEKSAELGAGLDWKTSLQELTAMEGLGVPEYLV 236 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 T GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 237 T-EEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 275 >gi|304436759|ref|ZP_07396727.1| ribonuclease III [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370239|gb|EFM23896.1| ribonuclease III [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 238 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHFD 64 L +G FA+ S L++ALTH S ++ + ERLEFLGD +L L IST L++ + Sbjct: 15 RLSASLGVDFADLSTLDEALTHPSYANEARGHAAHNERLEFLGDAVLELAISTYLYDAYP 74 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ SLV +ET +++AR L L + +R+ + + +V E++I Sbjct: 75 HCAEGELTKMRASLVQSETLARLARRLHLGAHLRMGRGEMLGGGAERQNNLENVFEAVIG 134 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G + A +V + + L+ +D KT LQE+ Y+ SG Sbjct: 135 AVYLDRGWDAARAYVQRQFADELPHLRQEHVAQDYKTMLQEYVQGHDHEPIAYEQVAESG 194 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDHD RFT+ V I +G SK+ AEQ AAA L+R Sbjct: 195 PDHDKRFTMRVRIGTAPLGEGTGRSKKEAEQHAAAAALERL 235 >gi|50954668|ref|YP_061956.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07] gi|81391047|sp|Q6AFJ4|RNC_LEIXX RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|50951150|gb|AAT88851.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07] Length = 237 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 78/217 (35%), Positives = 106/217 (48%), Gaps = 6/217 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 S L +++G + LLE ALTH S ++ + ERLEFLGD ILG ++ LF Sbjct: 9 SALLEKLGVDI-DPELLELALTHRSYAYENGGIPNNERLEFLGDSILGQAVTVKLFRENP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ R SLVS+ ++VAR + L ++ + + SI AD VE++I Sbjct: 68 GLDEGELAKRRASLVSSVALAEVARGIGLGEYLLLGRGENQSGGREKASILADTVEAVIG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G + A V + +F D KT LQE A P Y V +G Sbjct: 128 AVYLDAGGDEATALVLRLIGPLLADPDRFGAAMDPKTSLQEAAAHHGAGQPVYTVIN-TG 186 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 PDH F V++ GL A G SK+ AE AA Sbjct: 187 PDHSKTFHATVDVGGLVTASGEGTSKKQAEMAAALSA 223 >gi|220917396|ref|YP_002492700.1| Ribonuclease III [Anaeromyxobacter dehalogenans 2CP-1] gi|219955250|gb|ACL65634.1| Ribonuclease III [Anaeromyxobacter dehalogenans 2CP-1] Length = 383 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 74/212 (34%), Positives = 113/212 (53%), Gaps = 6/212 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHF 63 LE R+G A +R ALTH S + ++E ERLEFLGD ++ L +S L F Sbjct: 27 ALEARLGIAVTDRQAALAALTHKSYVNEHREDGLQDNERLEFLGDAVIDLAVSHRLMERF 86 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 SA+EG+LS ++V + + +AR LDL + +R+ +S+ AD +E++I Sbjct: 87 PSAREGDLSKMRAAVVDEQGLAGMARALDLGTLLRLGRGEELTGGRQKSSLLADAMEAVI 146 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+Y G+ FVD++ + + +G RD KT+LQE + ++ TP Y+V Sbjct: 147 AAVYQGQGLPAVLCFVDRFLGEAFARAAAGTLDRDFKTQLQELSQSRLRATPRYRVVAEH 206 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 GPDH F V ++ G +G SK+ AEQ Sbjct: 207 GPDHSKTFEVETDLRGEVLGRGAGRSKKDAEQ 238 >gi|163856074|ref|YP_001630372.1| ribonuclease III [Bordetella petrii DSM 12804] gi|229564350|sp|A9IIJ2|RNC_BORPD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|163259802|emb|CAP42103.1| Ribonuclease III [Bordetella petrii] Length = 252 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 112/221 (50%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +TLE R+ + F N +LLE+ALTH S S + ERLEFLGD +L +++ +LF F Sbjct: 1 MSLATLETRLDHRFGNAALLEQALTHRSHSARH---NERLEFLGDSVLNFVVAAMLFERF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + + + + L+L+ ++R+ K SI AD VE++ Sbjct: 58 PKLDEGDLSRLRANLVKQASLADIGQRLELSQYLRLGEGELKSGGFRRPSILADAVEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A +LDGG + A + + ++ + +DAKT LQE+ + P Y V Sbjct: 118 GAAFLDGGFDTARKVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPLYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H +F V I L S+RAAEQ AA L+ Sbjct: 178 GAAHSQQFEVECAIPALEIKVVAPGASRRAAEQSAAKLALE 218 >gi|223932807|ref|ZP_03624804.1| Ribonuclease III [Streptococcus suis 89/1591] gi|302023944|ref|ZP_07249155.1| ribonuclease III [Streptococcus suis 05HAS68] gi|330832996|ref|YP_004401821.1| ribonuclease III [Streptococcus suis ST3] gi|223898516|gb|EEF64880.1| Ribonuclease III [Streptococcus suis 89/1591] gi|329307219|gb|AEB81635.1| ribonuclease III [Streptococcus suis ST3] Length = 228 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 107/225 (47%), Gaps = 7/225 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 ++ L G F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS L+ Sbjct: 5 HAKLLADFGIDFSDLNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLMISKYLYQ 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGE+S ++ V E+ + +R F+R+ K +I D E+ Sbjct: 65 KYPDRPEGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILGDAFEA 124 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 + AL LD G + F+ K R L+ G F R D KT LQE + Y+V Sbjct: 125 FLGALLLDKGEKTVEEFIHKVMIPR-LEKGNFERVTDYKTALQEILQVNGEIAISYQVIA 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP HD F V V +G SK+ AEQ AA ++ G Sbjct: 184 ESGPAHDKTFEVEVSADRRVIGRGRGRSKKLAEQAAAKNAVEARG 228 >gi|325926994|ref|ZP_08188269.1| RNAse III [Xanthomonas perforans 91-118] gi|325928522|ref|ZP_08189710.1| RNAse III [Xanthomonas perforans 91-118] gi|325541061|gb|EGD12615.1| RNAse III [Xanthomonas perforans 91-118] gi|325542653|gb|EGD14120.1| RNAse III [Xanthomonas perforans 91-118] Length = 226 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 111/214 (51%), Gaps = 6/214 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ +LL +AL H S + ERLEFLGD I+ LLI+ L+ + A EG L+ Sbjct: 12 IGHAFADPALLAQALRHRSAGTPH---NERLEFLGDGIVNLLIAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFH 188 Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + +A A+G S+R AEQ AA V+ + Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222 >gi|227500106|ref|ZP_03930177.1| ribonuclease III [Anaerococcus tetradius ATCC 35098] gi|227217821|gb|EEI83118.1| ribonuclease III [Anaerococcus tetradius ATCC 35098] Length = 239 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 122/224 (54%), Gaps = 6/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFN 61 + E++IGY+F ++ L++ A THSS ++ ++S ERLEFLGD IL +++S +LF Sbjct: 10 KIEEFEEKIGYSFNDKELIDVAFTHSSYTNEVKGKKKSNERLEFLGDSILDMIVSEILFK 69 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ EG L+ + LV + ++ + ++S++ + ++ ++AD E+ Sbjct: 70 NYSQKPEGWLTKTRSRLVCTSSFAKACEKFQMSSYLNFGNGEKQGGGELKKHVKADTFEA 129 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + AA+YLD E F+ +K A + D KT+LQE+ +AK +Y++T Sbjct: 130 VCAAIYLDSSYENLFNFLVTNYKAEALHVINDDSIFNDYKTKLQEYHNAKDKKILKYELT 189 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP+H FT+ V++ A G+ +K+ AEQ+AA ++ Sbjct: 190 KEEGPEHSKTFTMAVKLGNKILAYGVGKNKKQAEQMAAKAAFEK 233 >gi|302522137|ref|ZP_07274479.1| ribonuclease III [Streptomyces sp. SPB78] gi|302431032|gb|EFL02848.1| ribonuclease III [Streptomyces sp. SPB78] Length = 286 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 119/220 (54%), Gaps = 6/220 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 30 AASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 88 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V+R LDL +FIR+ SI AD + Sbjct: 89 YRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTL 148 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS + D KT LQE + PEY V Sbjct: 149 EAVIGAVYLDQGLDKAAELVHRLFDPLIEKSAELGAGLDWKTSLQELTAMEGLGVPEYLV 208 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 T GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 209 T-EEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 247 >gi|166712833|ref|ZP_02244040.1| ribonuclease III [Xanthomonas oryzae pv. oryzicola BLS256] Length = 226 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 111/214 (51%), Gaps = 6/214 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ +LL +AL H S + ERLEFLGD I+ LL++ L+ + A EG L+ Sbjct: 12 IGHAFADPALLAQALRHRSAGTPH---NERLEFLGDGIVNLLVAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKPEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188 Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + +A A+G S+R AEQ AA V+ + Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222 >gi|21242078|ref|NP_641660.1| ribonuclease III [Xanthomonas axonopodis pv. citri str. 306] gi|24212270|sp|Q8PMV0|RNC_XANAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|21107485|gb|AAM36196.1| ribonuclease III [Xanthomonas axonopodis pv. citri str. 306] Length = 226 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 112/214 (52%), Gaps = 6/214 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ +LL +AL H S + ERLEFLGD I+ LLI+ L++ + A EG L+ Sbjct: 12 IGHAFADPALLAQALRHRSAGTPH---NERLEFLGDGIVNLLIAEALYHRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFH 188 Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + +A A+G S+R AEQ AA V+ + Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222 >gi|332305561|ref|YP_004433412.1| ribonuclease III [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172890|gb|AEE22144.1| ribonuclease III [Glaciecola agarilytica 4H-3-7+YE-5] Length = 227 Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 118/221 (53%), Gaps = 6/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y L K++GY F + + L ALTH S+ ++ ERLEFLGD +LGL+I+ LF F Sbjct: 7 YKPLYKKLGYEFQDPNNLTIALTHRSVGANH---NERLEFLGDAVLGLVIAKALFERFPK 63 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG L+ +SLV +T ++VARE L + + K SI AD VE++I A Sbjct: 64 QPEGNLTRMRSSLVKGDTLAEVAREFALGDLLLLGPGELKSGGHRRDSILADAVEAIIGA 123 Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +Y + G++ + ++ +R AL +D KT LQE+ + PEY+V SG Sbjct: 124 IYQEVGMQGCEPLILAWFAKRIEALNPDATPKDDKTRLQEYLQGRQLPLPEYEVIDISGK 183 Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 HD FTV ++GL +P G S+R AEQ A + L+ Sbjct: 184 SHDQTFTVKCTVAGLNSPIIGRGKSRRRAEQRTAKQALENL 224 >gi|24217145|ref|NP_714628.1| ribonuclease III [Leptospira interrogans serovar Lai str. 56601] gi|45655649|ref|YP_003458.1| dsRNase III [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|59798574|sp|Q75FW5|RNC_LEPIC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|59798588|sp|Q8EXX3|RNC_LEPIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|24202183|gb|AAN51643.1| ribonuclease 3 [Leptospira interrogans serovar Lai str. 56601] gi|45602620|gb|AAS72095.1| dsRNase III [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 247 Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 116/223 (52%), Gaps = 5/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 L K+IG F+ A HSS + QE ERLEFLGD +LGL+ + LF Sbjct: 20 SLQKLSKKIGIKFSKVEYYNTAFIHSSYKNENQEILEDNERLEFLGDSVLGLVAARSLFR 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + A EGELS + +VS + ++ +L+L+ ++ + + + + A++ ES Sbjct: 80 KYPKANEGELSRIKSRIVSTPILNSISEKLELSEYLLLGKGEKNSLGKGRRKLSANLFES 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A+YLD G E+A F+ ++ + K RD KT+LQE++ F + P Y+ Sbjct: 140 LVGAIYLDQGFEIAEKFILRHLSEFVENPEKEESVRDYKTQLQEYSQKHFKILPIYRTKS 199 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGPDH F VVV I A G SK++AEQ AA E+ R Sbjct: 200 ESGPDHAKTFQVVVRIRDQWEASGSGVSKKSAEQNAAKELYNR 242 >gi|331005223|ref|ZP_08328616.1| Ribonuclease III [gamma proteobacterium IMCC1989] gi|330420966|gb|EGG95239.1| Ribonuclease III [gamma proteobacterium IMCC1989] Length = 217 Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 85/215 (39%), Positives = 114/215 (53%), Gaps = 6/215 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L+KRI Y F++ SLLE ALTH S S + + ERLEFLGD +LG+ IS LF F Sbjct: 6 DLKQLQKRIDYQFSDESLLETALTHRSFSST---NNERLEFLGDSLLGVTISQQLFEQFP 62 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 KEG LS + + LV T + +ARE L+ ++ + S K SI AD VE++I Sbjct: 63 DVKEGILSRQRSRLVKGVTLAALAREFSLSDYLIMGSGELKSGGFRRDSILADTVEAIIG 122 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++LD I+ + +++ R L S +D KT LQE +K P Y V G Sbjct: 123 AIFLDSDIQQCQKVILQWFHDRLQGLSSHDQLKDPKTRLQELLQSKKKPLPTYTVANIEG 182 Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAA 216 H+ RFTV I+ L A S+R AEQ AA Sbjct: 183 ASHEQRFTVDCGIALLDTAVTATAGSRRQAEQQAA 217 >gi|226322326|ref|ZP_03797844.1| hypothetical protein COPCOM_00087 [Coprococcus comes ATCC 27758] gi|225209248|gb|EEG91602.1| hypothetical protein COPCOM_00087 [Coprococcus comes ATCC 27758] Length = 252 Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 73/209 (34%), Positives = 105/209 (50%), Gaps = 5/209 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 LE++IGY F + LL A+THSS + + ERLEFLGD +L L+ S LF Sbjct: 25 NVKELEEKIGYNFKDSHLLRHAVTHSSYVNEKHMKKADCNERLEFLGDAVLELISSEYLF 84 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EGEL+ S+V + + AR+L+L S++ + F SI +D +E Sbjct: 85 FENQTMPEGELTKLRASMVCEKALAFCARDLELGSYLLLGKGEDATGGRFRESITSDALE 144 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI A+YLDGG A F+ KY L+ + D+KT LQE Y++ Sbjct: 145 ALIGAIYLDGGFANAKEFILKYIL-NDLEGKRLFYDSKTILQEMVQGGQEKGIVYQLVGE 203 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDH+ F V I G A G+ +K+ Sbjct: 204 EGPDHNKSFRVEAVIGGEAFGCGIGRTKK 232 >gi|70728453|ref|YP_258202.1| ribonuclease III [Pseudomonas fluorescens Pf-5] gi|68342752|gb|AAY90358.1| ribonuclease III [Pseudomonas fluorescens Pf-5] Length = 225 Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 78/210 (37%), Positives = 111/210 (52%), Gaps = 6/210 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+++GY+F ++ L+ ALTH S + + ERLEFLGD IL + LF F A Sbjct: 2 SRLERQLGYSFKDQELMLLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFERFPQA 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS LV ET + +AR DL ++R+ S K SI AD +E+LI A+ Sbjct: 59 REGQLSRLRARLVKGETLAVLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 118 Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G+E A V + +L +D KT LQE+ ++ P Y+V G Sbjct: 119 YLDAGMETARDRVLSWLASEFESLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEP 178 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 H F V E++ L ++G S+R AEQ Sbjct: 179 HCRTFFVECEVTLLNEKSRGQGVSRRIAEQ 208 >gi|292670166|ref|ZP_06603592.1| ribonuclease III [Selenomonas noxia ATCC 43541] gi|292648118|gb|EFF66090.1| ribonuclease III [Selenomonas noxia ATCC 43541] Length = 238 Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 73/217 (33%), Positives = 113/217 (52%), Gaps = 8/217 (3%) Query: 1 MSALRYSTLEKR---IGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLL 54 M R + L + +G +F + +LL++ALTH S ++ ++ ERLEFLGD +L L Sbjct: 5 MKDERLAQLMRLSAEMGVSFNDFALLDEALTHPSYTNEAKDTIPHNERLEFLGDAVLELA 64 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ST L+ F EGEL+ SLV + T +++AR LDL S +R+ + + + Sbjct: 65 SSTYLYARFPDCSEGELTKMRASLVQSNTLARLARALDLGSCLRLGRGEFHNGGADRQNN 124 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVT 172 + E++I A+YLD G E A +V + + A +K + D KT LQE + Sbjct: 125 LENAFEAVIGAVYLDAGWETAKEYVARQLSREADHIKKAQVVHDYKTTLQEHIQQRRNKG 184 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 Y++ SGPDHD RFT+ V + +G SK+ Sbjct: 185 IVYELIDESGPDHDKRFTMRVLVDNQPIGEGAGRSKK 221 >gi|297568930|ref|YP_003690274.1| ribonuclease III [Desulfurivibrio alkaliphilus AHT2] gi|296924845|gb|ADH85655.1| ribonuclease III [Desulfurivibrio alkaliphilus AHT2] Length = 232 Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 72/204 (35%), Positives = 99/204 (48%), Gaps = 5/204 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHFDSA 66 +R+GY F + LL +ALTH S + + ERLEFLGD +L L + LL+ Sbjct: 12 QRLGYCFHDPQLLRQALTHRSFTAEGGGRGRPHNERLEFLGDAVLDLAVGELLYRRHPKM 71 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EGELS R +LV+ +++AR L + + + SI AD E+L+ A+ Sbjct: 72 REGELSRRRAALVNEAHLARMARRTGLDELLLLGRGEAQSGGRDKPSILADAFEALLGAV 131 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLDGG + + F DAKT LQE + G P Y++ GP H Sbjct: 132 YLDGGCRAVLDLAAELFAPWVTDQDDFEENDAKTALQEVLQERHGQAPGYRLVAEEGPAH 191 Query: 186 DPRFTVVVEISGLAPAQGMDCSKR 209 D RFTV VE G QG SK+ Sbjct: 192 DKRFTVEVEFRGRVMGQGKARSKK 215 >gi|229822809|ref|ZP_04448879.1| hypothetical protein GCWU000282_00098 [Catonella morbi ATCC 51271] gi|229787622|gb|EEP23736.1| hypothetical protein GCWU000282_00098 [Catonella morbi ATCC 51271] Length = 247 Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 66/214 (30%), Positives = 113/214 (52%), Gaps = 5/214 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFD 64 +EK++ F L+++A H+S ++ + YERLEFLGD +L LL S L++ + Sbjct: 10 IEKQLNLTFKKPELIQQAFRHTSYANEQARRHLPHYERLEFLGDAVLELLSSEFLYHSYP 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+L+ +V ++ + +AR+L F+++ SI AD E+++ Sbjct: 70 NLPEGKLTRMRAQIVQEKSLAYLARQLKFNQFLQLGKGEELSGGRERDSILADCFEAVLG 129 Query: 125 ALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+Y D G+EVA ++++ + Q L G+ +D KT QE + V +Y++ + GP Sbjct: 130 AIYEDQGLEVAKDYLNRVMFSQHQLLLGRVTQDHKTLFQERVQKQGTVQIDYRLKDKQGP 189 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 HD FTV + ++ A G SK+ AE AA Sbjct: 190 AHDQIFTVELYVNDQHIATGQGSSKKQAEMQAAE 223 >gi|78046932|ref|YP_363107.1| ribonuclease III [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|90101655|sp|Q3BVV6|RNC_XANC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|78035362|emb|CAJ23007.1| ribonuclease III [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 226 Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 111/214 (51%), Gaps = 6/214 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ +LL +AL H S + ERLEFLGD I+ LLI+ L+ + A EG L+ Sbjct: 12 IGHAFADPALLARALRHRSAGTPH---NERLEFLGDGIVNLLIAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFH 188 Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + +A A+G S+R AEQ AA V+ + Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222 >gi|58581478|ref|YP_200494.1| ribonuclease III [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623408|ref|YP_450780.1| ribonuclease III [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|75435762|sp|Q5H1R2|RNC_XANOR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|58426072|gb|AAW75109.1| ribonuclease III [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367348|dbj|BAE68506.1| ribonuclease III [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 226 Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 110/214 (51%), Gaps = 6/214 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ LL +AL H S + ERLEFLGD I+ LL++ L+ + A EG L+ Sbjct: 12 IGHAFADPDLLAQALRHRSAGTPH---NERLEFLGDGIVNLLVAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188 Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + +A A+G S+R AEQ AA V+ + Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222 >gi|78485079|ref|YP_391004.1| ribonuclease III [Thiomicrospira crunogena XCL-2] gi|78363365|gb|ABB41330.1| RNAse III [Thiomicrospira crunogena XCL-2] Length = 233 Score = 241 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 6/219 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + L K +GY + N L++ALTH S+ ++ ERLEFLGD ++ +I+ LF+ F Sbjct: 9 KLNRLSKSLGYQYKNIEFLQRALTHRSMG---AKNNERLEFLGDSLVNFMIADALFHQFH 65 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS LV ET +++ +E L+ ++ + K SI AD VE++IA Sbjct: 66 KISEGDLSRIRAFLVKGETLAKIGKEYQLSDYLMLGPGELKSGGYRRESIIADTVEAIIA 125 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ++Y DGG++ FV + ++ R L K +D KT LQE+ + PEY V +G Sbjct: 126 SVYEDGGLDACRAFVMRLYENRLKELDPSKIGKDPKTRLQEFLQSNREQLPEYSVMTVNG 185 Query: 183 PDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220 P H FTV ++ L + ++R AEQVAA E L Sbjct: 186 PAHAQEFTVSCYVAKLNRKFEATATNRRKAEQVAAQEAL 224 >gi|170720259|ref|YP_001747947.1| ribonuclease III [Pseudomonas putida W619] gi|229564376|sp|B1J4E0|RNC_PSEPW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|169758262|gb|ACA71578.1| Ribonuclease III [Pseudomonas putida W619] Length = 229 Score = 241 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 77/218 (35%), Positives = 112/218 (51%), Gaps = 11/218 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MSA + LE+++GY F ++ + ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSA-SLARLERKLGYTFKDQDQMVLALTHRSYA---GRNNERLEFLGDAILNFVAGEALF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A+EG+LS LV ET +++AR DL ++R+ S K SI AD +E Sbjct: 57 ERFPQAREGQLSRLRARLVKGETLARLARGFDLGEYLRLGSGELKSGGFRRESILADALE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD ++ A V + +L +D KT LQE+ ++ P Y+V Sbjct: 117 ALIGAIYLDADMQTARERVLAWLTDEFESLTLVDTNKDPKTRLQEFLQSRSCELPRYEVV 176 Query: 179 FRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213 G H F V E+ + + QG+ S+R AEQ Sbjct: 177 DIQGEPHCRTFFVECEVVLLNNKSRGQGV--SRRIAEQ 212 >gi|270304349|gb|ACZ71259.1| RNAse type III [Escherichia coli BL21] Length = 226 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 67/213 (31%), Positives = 114/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH + ++ ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHR---RASRKHNERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ + K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGTGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++L+ I+ + +++ R + G ++D KT + E+ + P Y V Sbjct: 118 ALIGGVFLESDIQTVEKLILNWYQTRVDEISPGDKQKDPKTRVHEYLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|256847360|ref|ZP_05552806.1| ribonuclease III [Lactobacillus coleohominis 101-4-CHN] gi|256716024|gb|EEU30999.1| ribonuclease III [Lactobacillus coleohominis 101-4-CHN] Length = 233 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 7/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56 M L F N LL +A T +S + + E YER+EFLGD +L L +S Sbjct: 1 MITELQQYLADEFDIHFQNPDLLAEAFTQASYVNEHPEQHLKYYERIEFLGDAVLQLFVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ + +G+L+ ++V ++ S+ A+E +IR+ + Sbjct: 61 EYIYRRYPELLQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRPGLLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ ES I ALYLD G + F+ + + L G F D KT LQE+ V E Sbjct: 121 DIFESFIGALYLDQGRDAVERFIHRVIFPK-LDMGWFDHAVDTKTSLQEFLQRDGDVDIE 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y + +G ++ P F V V G AQG SK+ AE AAA+ LK+ Sbjct: 180 YHLLDETGSENAPEFKVNVSADGQVLAQGTGSSKKHAEMDAAAQALKKL 228 >gi|331091059|ref|ZP_08339901.1| ribonuclease III [Lachnospiraceae bacterium 2_1_46FAA] gi|330405281|gb|EGG84817.1| ribonuclease III [Lachnospiraceae bacterium 2_1_46FAA] Length = 231 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 72/209 (34%), Positives = 104/209 (49%), Gaps = 5/209 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60 + LEK+IGY F LL +A+ HSS ++ E ERLEFLGD +L L+ S LF Sbjct: 4 KLKELEKKIGYKFQRFDLLCQAMRHSSYANEKHMEKNECNERLEFLGDAVLELVSSEFLF 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EGEL+ S+V + + AREL+L S++ + + S+ +D +E Sbjct: 64 FENKKMPEGELTRTRASIVCEPSLAFCARELNLGSYLLLGKGEENTGGRYRESLTSDALE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI A+YLDGG A F+ ++ L+ K D+KT LQE F EY + Sbjct: 124 ALIGAIYLDGGFASAKEFIHRFVL-NDLEHKKLFFDSKTILQEIVQGNFNEPIEYTLLKE 182 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDH+ F + V I G +K+ Sbjct: 183 EGPDHNKSFFISVSIGNEVYGNGKGRTKK 211 >gi|323702685|ref|ZP_08114346.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574] gi|323532348|gb|EGB22226.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574] Length = 204 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 70/187 (37%), Positives = 92/187 (49%), Gaps = 2/187 (1%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +RLEFLGD +L LLIS L+ F EGEL+ + V + ++VAR LDL +R Sbjct: 3 HNQRLEFLGDAVLELLISEYLYQRFPDRTEGELTKMRAASVCEPSLAKVARGLDLGRCLR 62 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRD 156 + + SI AD E+L+ A+YLD G+E A FV + +G+ RD Sbjct: 63 MGRGEERSGGRERPSILADAFEALLGAIYLDHGLEAARKFVLEQLNPIITDVVAGRLDRD 122 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 KTELQE Y + +GPDHD FT V G QG SK+ AEQ AA Sbjct: 123 YKTELQERLQQNSPDPVSYVIMKETGPDHDKVFTAGVIYRGQIIGQGSGHSKKEAEQQAA 182 Query: 217 AEVLKRE 223 + R Sbjct: 183 KDAFNRL 189 >gi|189043297|sp|A8Z6F6|RNC_CAMC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|158604915|gb|ABW74738.1| ribonuclease III [Campylobacter concisus 13826] Length = 223 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 68/220 (30%), Positives = 113/220 (51%), Gaps = 4/220 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 E+ +GY F LLE+ALTH S + + ERLEFLGD ++ LL++ LF F Sbjct: 3 NLEEFERNLGYKFKKSELLEEALTHKSTKQAL--NNERLEFLGDAVMDLLVAEYLFKKFS 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG++S +LV+ ++ + +AR L + F+R+S + SI +D E+++ Sbjct: 61 KIAEGDMSKLRAALVNEKSFANMARRLKMGEFLRLSQAEENNGGREKDSILSDAFEAVMG 120 Query: 125 ALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL+ G+ + + +D KT LQE A GV P Y++ G Sbjct: 121 AIYLEAGLLKVREISISLLELCYPQIDFAHLEKDYKTALQEVTQATLGVIPTYELIGSFG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 PDH F + + ++G ++ + SK+ A+Q+AA L++ Sbjct: 181 PDHKKEFEIALLLNGKEISRAVGSSKKQAQQLAAKIALEK 220 >gi|190575414|ref|YP_001973259.1| ribonuclease III [Stenotrophomonas maltophilia K279a] gi|190013336|emb|CAQ46970.1| putative ribonuclease III [Stenotrophomonas maltophilia K279a] Length = 226 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 75/217 (34%), Positives = 113/217 (52%), Gaps = 7/217 (3%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 IG+AF++ +LL++ALTH S + ERLEFLGD I+ ++ + L+ + A EG Sbjct: 10 DLIGHAFSDPALLKQALTHRSAGAPH---NERLEFLGDSIVNMMAAEALYRRWPKADEGA 66 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 ++ LV + +AR L L + + K SI AD VE+++AA+YLD Sbjct: 67 MTRARAELVREGALAVIARTLQLGERLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDA 126 Query: 131 GIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G E V ++ + SG+ +D KT LQEW A+ P+Y++ SG DH Sbjct: 127 GFEACRAVVLPWFSASIEALPASGRPEKDPKTRLQEWLQARQKALPQYELVSESGDDHAK 186 Query: 188 RFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V ++ A +G S+R AEQ AAA VL++ Sbjct: 187 HFRVRCNVADPAASTEGEGASRRLAEQQAAAAVLEQL 223 >gi|15672784|ref|NP_266958.1| ribonuclease III [Lactococcus lactis subsp. lactis Il1403] gi|13878708|sp|Q9CHD0|RNC_LACLA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|12723723|gb|AAK04900.1|AE006313_7 ribonuclease III [Lactococcus lactis subsp. lactis Il1403] gi|326406354|gb|ADZ63425.1| ribonuclease III [Lactococcus lactis subsp. lactis CV56] Length = 231 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 104/223 (46%), Gaps = 9/223 (4%) Query: 8 TLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 L+K++ G F + LL+ A THSS ++ + + ERLEFLGD L L+IS L Sbjct: 3 KLQKKLKNDYGLVFNDEDLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYL 62 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EGELS +S+V E+ + +R F+R+ K + ++ Sbjct: 63 YRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLF 122 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVT 178 E+ + AL++D G++ F+ + D KTELQE T YK+ Sbjct: 123 EAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVIDYKTELQEVLQIGGETTISYKIL 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP HD F V +G +G+ SK+ AEQ AA +K Sbjct: 183 KEEGPAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225 >gi|332298046|ref|YP_004439968.1| Ribonuclease 3 [Treponema brennaborense DSM 12168] gi|332181149|gb|AEE16837.1| Ribonuclease 3 [Treponema brennaborense DSM 12168] Length = 256 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 109/229 (47%), Gaps = 8/229 (3%) Query: 1 MSALRYSTL---EKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLL 54 +SA R + L E+ I F + LL+ A H S S+ + ERLEFLGD +LG+ Sbjct: 21 LSAARRNQLLDFERAISVHFNDLQLLDLAFHHRSYSNEGANTRYNNERLEFLGDAVLGMA 80 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 +T L+ EG+L+ + +VS T + +A E+ + S + + +I Sbjct: 81 TATYLYESMLERPEGDLARIKSVVVSEMTLAPIALEIGVDSCLVLGKGEELSGGRTKKAI 140 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVT 172 AD VE++I A YLD G A V + K K RD KT LQE+ K+ Sbjct: 141 LADAVEAVIGAYYLDSGYSAAEKLVLELIVPEIQKVLQNKHHRDYKTLLQEFYQKKYKEC 200 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P Y++ R+GPDHD F V V + + +K+ AEQ AA + Sbjct: 201 PVYELVKRTGPDHDRTFWVSVHLHSVTYGPASGKNKKEAEQSAARLAWE 249 >gi|116511619|ref|YP_808835.1| ribonuclease III [Lactococcus lactis subsp. cremoris SK11] gi|122940253|sp|Q030F9|RNC_LACLS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116107273|gb|ABJ72413.1| RNAse III [Lactococcus lactis subsp. cremoris SK11] Length = 231 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 103/223 (46%), Gaps = 9/223 (4%) Query: 8 TLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 L++++ G F + LL+ A THSS ++ + + ERLEFLGD L L+IS L Sbjct: 3 KLQEKLKNDYGLVFNDEDLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYL 62 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EGELS +S+V E+ + +R F+R+ K + ++ Sbjct: 63 YRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLF 122 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVT 178 E+ + AL++D G++ F+ + D KTELQE T Y + Sbjct: 123 EAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVIDYKTELQEVLQVGGETTITYNIL 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP HD F V +G +G+ SK+ AEQ AA +K Sbjct: 183 KEEGPAHDRSFVAAVYNNGKELGRGLGKSKKVAEQKAAENAIK 225 >gi|226943497|ref|YP_002798570.1| ribonuclease III [Azotobacter vinelandii DJ] gi|259491898|sp|C1DQS2|RNC_AZOVD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226718424|gb|ACO77595.1| ribonuclease III [Azotobacter vinelandii DJ] Length = 229 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 77/218 (35%), Positives = 105/218 (48%), Gaps = 11/218 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MSA + LE+++G+ F N+ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSA-SLNRLERKLGHTFKNQDLMLLALTHRSFA---SRNNERLEFLGDAILNFVAGEALF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F AKEG+LS LV ET + +AR DL +R+ S K SI AD +E Sbjct: 57 ERFPQAKEGQLSRLRARLVKGETLALLARGFDLGDHLRLGSGELKSGGFRRESILADALE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD G+ V + L +D KT LQE+ ++ P Y+V Sbjct: 117 ALIGAIYLDAGLNTVRERVLGWLAGELDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVV 176 Query: 179 FRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213 G H F V + + G S+R AEQ Sbjct: 177 DIQGEPHCRTFFVECRVALLNDKTY--GQGASRRIAEQ 212 >gi|239982550|ref|ZP_04705074.1| ribonuclease III [Streptomyces albus J1074] Length = 260 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 121/224 (54%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 13 TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 71 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V+R L+L SFIR+ SI AD + Sbjct: 72 YRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLELGSFIRLGRGEEGTGGRDKASILADTL 131 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G+E AG V + + KS D KT LQE + PEY V Sbjct: 132 EAVIGAVYLDQGLEAAGELVHRLFDPLIEKSSSLGAGLDWKTSLQELTATEGLGVPEYLV 191 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 192 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 234 >gi|328466160|gb|EGF37317.1| ribonuclease III [Listeria monocytogenes 1816] Length = 222 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 104/209 (49%), Gaps = 5/209 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179 S I ALYLD GI+ TF+++ + + D KT+LQE V EY + Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILG 182 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 +GP H+ F V ++G +G K Sbjct: 183 ETGPAHNKAFDAQVIVNGQVLGKGSGRQK 211 >gi|315499946|ref|YP_004088749.1| ribonuclease iii [Asticcacaulis excentricus CB 48] gi|315417958|gb|ADU14598.1| ribonuclease III [Asticcacaulis excentricus CB 48] Length = 242 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLLF 60 LE ++GY FA+R LL+ ALTH+S+S + ERLEFLGDR+LGLL++ L Sbjct: 16 LDELEAKLGYRFADRQLLDSALTHASVSDGRPKKTVSSDNERLEFLGDRVLGLLVAEALM 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGE+S R + LVS ETC+ VA L + + +R++ K +I D E Sbjct: 76 QAFPQAAEGEMSQRLHGLVSRETCAAVAMSLGVGAAMRLAPGETKSGGRSNLTILGDACE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179 +LIAA+YLDGG E A W+ S + K+ LQEWA K +P+Y++ Sbjct: 136 ALIAAVYLDGGFETARRIFGPLWQPHIRASHSRSHLNPKSHLQEWAAQKKLPSPKYEIVE 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 RSGPDH P F V + + G P S++ AE+ AA ++ G+ Sbjct: 196 RSGPDHAPIFKVALTLEGYDPVVASGKSRQEAEKAAALSFIEHAGL 241 >gi|238753924|ref|ZP_04615284.1| Ribonuclease 3 [Yersinia ruckeri ATCC 29473] gi|238707912|gb|EEQ00270.1| Ribonuclease 3 [Yersinia ruckeri ATCC 29473] Length = 226 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVITRLQRKLGYTFQQQELLLQALTHRSASSKH---NERLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD GI+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSGIQTVERLILDWYRSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLGEPVVGTGSSRRK 210 >gi|330993372|ref|ZP_08317307.1| Ribonuclease 3 [Gluconacetobacter sp. SXCC-1] gi|329759402|gb|EGG75911.1| Ribonuclease 3 [Gluconacetobacter sp. SXCC-1] Length = 258 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 85/237 (35%), Positives = 124/237 (52%), Gaps = 15/237 (6%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--------------YERLEFLG 47 A LE +GY F LL +ALTH S +H + ERLEF+G Sbjct: 7 PAAEIRRLEACLGYHFTRPELLLRALTHRSAAHERSGNRRTRQNVATRGAGSNERLEFIG 66 Query: 48 DRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 DR+LGL+++ L F + +EG L R LVS ++VA + L S + V+ + Sbjct: 67 DRVLGLVMAEWLLERFPTEQEGALGPRHAHLVSRTVLAEVAHAMALQSALDVAEHEARAG 126 Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 M ++ AD VE+++ A+YLDGG++ A FV + W+ + + +D KT LQEW Sbjct: 127 VRQMANVLADAVEAILGAIYLDGGLDPARAFVRRMWQDAIVAQARPPKDPKTALQEWVLG 186 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + P Y+V GP H PRF + V+ G QG+ SKRAAE AAA++L++ G Sbjct: 187 RGLPLPRYRVVSAEGPSHAPRFVIAVDAQGKT-GQGVAGSKRAAESDAAADLLRQLG 242 >gi|146278605|ref|YP_001168764.1| ribonuclease III [Rhodobacter sphaeroides ATCC 17025] gi|189043338|sp|A4WVP5|RNC_RHOS5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|145556846|gb|ABP71459.1| RNAse III [Rhodobacter sphaeroides ATCC 17025] Length = 229 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 84/211 (39%), Positives = 120/211 (56%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E RIG+AF L +A+TH+S+S + + +RLEFLGDR+LGL+++ L Sbjct: 4 STDLRAFESRIGHAFREPDRLLRAVTHASLSSATRPDNQRLEFLGDRVLGLVMAEALLAA 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 +A EG+L+ RFN+LV ETC+ VARE+ L +++ ++ D +E++ Sbjct: 64 DKAATEGQLAPRFNALVRKETCAAVAREVGLGDVLKLGRSEMMSGGRRKEALLGDALEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YLD G E A V + W +R + RDAKT LQEWA A+ P Y+ RSG Sbjct: 124 IAAVYLDAGFEAARRLVLRLWGERIAQVEADARDAKTALQEWAQARGLPPPCYEAVDRSG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 PDH P FTV V + + +KR AEQ Sbjct: 184 PDHAPIFTVEVRLGNGETERSAAGTKRVAEQ 214 >gi|32266198|ref|NP_860230.1| ribonuclease III [Helicobacter hepaticus ATCC 51449] gi|81666107|sp|Q7VIA9|RNC_HELHP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|32262248|gb|AAP77296.1| ribonuclease III [Helicobacter hepaticus ATCC 51449] Length = 240 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 75/217 (34%), Positives = 113/217 (52%), Gaps = 4/217 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK++GY F N+ LL +ALTH S Y + ERLEFLGD +L LL+ LF F AKE Sbjct: 13 LEKKLGYVFQNQQLLLEALTHKSCKKQY--NNERLEFLGDAVLDLLVGEYLFKKFPLAKE 70 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +V+ + ++A+ LDL +++ +S + SI ++ E+LI A+YL Sbjct: 71 GELSKLRACIVNEKGFMKLAQSLDLGAYLYISQSEENNNGRQKASILSNAFEALIGAIYL 130 Query: 129 DGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + + + + + +K D KT LQE A +G P Y + SGPDH Sbjct: 131 ESSLTYVQSIIYDLLEYNYIKIDLDSLFMDYKTALQEITQAFYGEIPTYTLISESGPDHK 190 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F + + + G A+ SK+ A+Q +A K+ Sbjct: 191 KSFEIALSVQGKEYARASGNSKKEAQQKSAQIAYKKL 227 >gi|220934266|ref|YP_002513165.1| Ribonuclease III [Thioalkalivibrio sp. HL-EbGR7] gi|219995576|gb|ACL72178.1| Ribonuclease III [Thioalkalivibrio sp. HL-EbGR7] Length = 228 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 70/208 (33%), Positives = 103/208 (49%), Gaps = 6/208 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 + LL +ALTH S + ERLE+LGD +LG++++ LF A EG+LS + Sbjct: 15 HDSELLTEALTHRSAGSP---NNERLEYLGDAVLGMVMAEHLFKAHPEASEGDLSRLRAT 71 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 LV+ ++ + + + L I + K + SI AD VE++I A+YLD G + A Sbjct: 72 LVNKDSLAVIGKAQGLGGHINLGQGELKSGGARRNSILADAVEAVIGAVYLDSGFDAARR 131 Query: 138 FVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 FV + R L + +D KT LQEW + P Y+VT +G H+ RF + + Sbjct: 132 FVLALYADRLESLPALDALKDPKTRLQEWLQGRSRELPVYEVTSVTGKAHEQRFRALCRV 191 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G S+R AEQ AA LK Sbjct: 192 GDQEY-PGEGTSRRRAEQAAAECALKAL 218 >gi|114566311|ref|YP_753465.1| ribonuclease III [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318607|sp|Q0AYW0|RNC_SYNWW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|114337246|gb|ABI68094.1| RNAse III [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 233 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 L+ ALTH S + + +RLEFLGD +L L+++ L+NH+ EGEL+ + Sbjct: 23 ELITMALTHPSYAQEKNTVANNQRLEFLGDAVLNLVVAEYLYNHYGRKAEGELTKIRAKV 82 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 V + + AR ++L ++ + SI AD VE++I A+YLD G+E F Sbjct: 83 VCEDALAIFARNINLGQYLLLGRGEEMSGGRKRKSILADAVEAVIGAIYLDQGLETVQRF 142 Query: 139 VDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + + ++ ++ D K++LQE A+ Y + SGP H F V Sbjct: 143 IIRQLEELISETASGDYYDYKSKLQELVQARDKENVSYAIIEESGPAHAKVFVAGVYYRE 202 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221 A G SK+ AEQ AA +VL+ Sbjct: 203 QLLATGEGKSKKEAEQKAAQKVLQ 226 >gi|94676727|ref|YP_588731.1| ribonuclease III [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219877|gb|ABF14036.1| ribonuclease III [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 225 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 77/212 (36%), Positives = 119/212 (56%), Gaps = 7/212 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L + L+K+IGY F N++LL +ALTH S S+ + ERLEFLGD IL +I+ L+ Sbjct: 1 MNCL-LNNLQKKIGYYFQNQNLLLQALTHRSASNKH---NERLEFLGDSILSYVIAHALY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++AREL+L++ +R+ K SI AD VE Sbjct: 57 QRFQYINEGDMSRMRATLVRGNTLAEIARELNLSTCLRLGIGELKSGGLSRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI +++LD I F+ ++ R + G+ ++D KT LQE+ + P Y + Sbjct: 117 ALIGSIFLDSNIFTVEKFILNLYRSRLNKIIPGERQKDPKTRLQEYLQGQHMPLPIYIIV 176 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKR 209 SG HD RF + +++ LA P G S+R Sbjct: 177 QISGETHDQRFIIHCQVNNLANPIIGHGSSRR 208 >gi|77462220|ref|YP_351724.1| RNAse III [Rhodobacter sphaeroides 2.4.1] gi|126461082|ref|YP_001042196.1| ribonuclease III [Rhodobacter sphaeroides ATCC 17029] gi|221641174|ref|YP_002527436.1| Ribonuclease 3 [Rhodobacter sphaeroides KD131] gi|332560101|ref|ZP_08414423.1| ribonuclease III [Rhodobacter sphaeroides WS8N] gi|90101641|sp|Q3J5W1|RNC_RHOS4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043337|sp|A3PGF8|RNC_RHOS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807895|sp|B9KSA7|RNC_RHOSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|77386638|gb|ABA77823.1| RNAse III [Rhodobacter sphaeroides 2.4.1] gi|126102746|gb|ABN75424.1| RNAse III [Rhodobacter sphaeroides ATCC 17029] gi|221161955|gb|ACM02935.1| Ribonuclease 3 [Rhodobacter sphaeroides KD131] gi|332277813|gb|EGJ23128.1| ribonuclease III [Rhodobacter sphaeroides WS8N] Length = 229 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 84/211 (39%), Positives = 118/211 (55%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E RIG+ F L +A+THSS+S + +RLEFLGDR+LGL+++ L Sbjct: 4 SADLKAFEGRIGHQFREPERLLRAVTHSSLSSVTRSDNQRLEFLGDRVLGLVMAEALLAA 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 +A EG+L+ RFN+LV ETC+ VARE+ L +++ ++ D +E++ Sbjct: 64 DRAASEGQLAPRFNALVRKETCAAVAREVALGDVLKLGRSEMMSGGRRKEALLGDALEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YLD G E A V + W R + + RDAKT LQEWA A+ P Y+ RSG Sbjct: 124 IAAVYLDAGFEAARQLVLRLWGARIAQVERDARDAKTALQEWAQARGLPPPTYEAVDRSG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 PDH P FTV V + + +KR AEQ Sbjct: 184 PDHAPIFTVEVRLGNGETDRAAAGTKRVAEQ 214 >gi|320536816|ref|ZP_08036812.1| ribonuclease III [Treponema phagedenis F0421] gi|320146325|gb|EFW37945.1| ribonuclease III [Treponema phagedenis F0421] Length = 243 Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 77/216 (35%), Positives = 109/216 (50%), Gaps = 5/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 +K+ G+ F N LL A H S SH ++ ++ ERLEFLGD +LGL+ ++ L+N Sbjct: 19 FQKKAGFKFKNLKLLNLAFHHRSFSHIHEASFQNNERLEFLGDSVLGLVTASCLYNLLSD 78 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL+ LVS ET S +A LD+ +I + +I AD +E++I A Sbjct: 79 CSEGELAKTKAVLVSEETLSDIALSLDVDKYIMLGRGEEMSGGRRKKAILADAMEAIIGA 138 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 LYLD G +VA FV + + +++ D K+ LQE + KF + P Y V GP Sbjct: 139 LYLDSGFKVAEKFVLRIITPKIPLVRNENLHMDYKSALQELSQKKFQILPLYTVVKAQGP 198 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 DHD F V V+I SK+ A Q A Sbjct: 199 DHDRTFWVEVQIHTKKYGPATGKSKKEAAQAVAELA 234 >gi|317125435|ref|YP_004099547.1| RNAse III [Intrasporangium calvum DSM 43043] gi|315589523|gb|ADU48820.1| RNAse III [Intrasporangium calvum DSM 43043] Length = 265 Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 6/220 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + LE+ +G + LL ++LTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 24 LAHLEEVVGQEI-DEPLLLRSLTHRSFAYENGGVPNNERLEFLGDSVLGLVVTDTLYRSH 82 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ ++V+ + VAR DL ++ + SI AD +E+LI Sbjct: 83 PDLPEGQLAKLRAAVVNMRALADVARTFDLGQYVMLGKGEEATGGRDKASILADSMEALI 142 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL I++A F+ ++ ++ D KT LQ+ A A PEY+V Sbjct: 143 GTVYLSTDIDLAAQFIHHHFDAILEEAATLGAGLDWKTSLQQVAAAVGQGAPEYRV-AEQ 201 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDH+ F V + +G SK+ AEQ AA E + Sbjct: 202 GPDHEKEFHARVVLGEEVLGEGHGRSKKEAEQKAAQEAWQ 241 >gi|15924223|ref|NP_371757.1| ribonuclease III [Staphylococcus aureus subsp. aureus Mu50] gi|156979554|ref|YP_001441813.1| ribonuclease III [Staphylococcus aureus subsp. aureus Mu3] gi|255006020|ref|ZP_05144621.2| ribonuclease III [Staphylococcus aureus subsp. aureus Mu50-omega] gi|22654068|sp|Q931T1|RNC_STAAM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043357|sp|A7X1J9|RNC_STAA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|14247003|dbj|BAB57395.1| RNase III [Staphylococcus aureus subsp. aureus Mu50] gi|156721689|dbj|BAF78106.1| RNase III [Staphylococcus aureus subsp. aureus Mu3] Length = 243 Score = 240 bits (614), Expect = 9e-62, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 R+ T +G+ + N L ++A +HSS + + + ERLEFLGD +L L +S LF Sbjct: 16 RFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG L+ ++V + A ++ L I + K S+ +D E Sbjct: 76 DKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G+++ F +K ++ D KT+ QE+ H + Y + Sbjct: 136 AFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNLIK 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H FT V + G A A+G +K+ +EQ AA K+ Sbjct: 196 EEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAKSAYKQL 239 >gi|229086402|ref|ZP_04218578.1| Ribonuclease 3 [Bacillus cereus Rock3-44] gi|228696918|gb|EEL49727.1| Ribonuclease 3 [Bacillus cereus Rock3-44] Length = 245 Score = 240 bits (614), Expect = 9e-62, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + T +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKTFQQKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL + + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGNLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G++ F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLDTVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|227488592|ref|ZP_03918908.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51867] gi|227091486|gb|EEI26798.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51867] Length = 250 Score = 240 bits (614), Expect = 9e-62, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 6/220 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + ++ L +++G + LL ALTH S ++ + ERLEFLGD +LG ++ LF Sbjct: 20 VDHAPLLEKLGTTVS-PELLRLALTHRSFANENGGLPNNERLEFLGDSVLGCSVAWKLFE 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + S+ E +S +VS + +ARE+ L +I + SI AD E+ Sbjct: 79 TYPSSPESVISKMRARIVSRFGLADIAREIGLGKYILLGRGEILTDGRDKDSILADTTEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + A++L+ G E A + + ++ + + D KT LQE A + PEY+ +F Sbjct: 139 IFGAIFLEHGFEAARHTILTLFHEKIVHASSDSIHTDWKTLLQERAAERKLPMPEYEASF 198 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +GPDHD FT I G G +K+AAEQ+AA + Sbjct: 199 -TGPDHDRFFTATAIIDGKVVGTGQGHNKKAAEQLAAKQA 237 >gi|295109853|emb|CBL23806.1| RNAse III [Ruminococcus obeum A2-162] Length = 223 Score = 240 bits (614), Expect = 9e-62, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 109/207 (52%), Gaps = 5/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 LE+ IGY F N+ LL++ALTHSS ++ + ERLEFLGD +L L+ S L+ Sbjct: 2 EQLEQIIGYTFQNKKLLKQALTHSSYANEKKLGKLGCNERLEFLGDAVLELISSDFLYRK 61 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EGEL+ + SLV + + ARE L F+ + SI +D E+L Sbjct: 62 FSQIPEGELTKKRASLVCEPSLAYCAREFGLPEFLLLGKGENMTGGRNRDSIVSDATEAL 121 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + A+YLDGG A FV + ++ + D+KT LQE K EY +T G Sbjct: 122 LGAIYLDGGFSNAKKFVLNFIL-NDIEHKQLFYDSKTILQELVQEKGLQPIEYVLTGEDG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDHD RFTVVV+++G G +K+ Sbjct: 181 PDHDKRFTVVVQVNGQVVGSGTGHTKK 207 >gi|239948355|ref|ZP_04700108.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes scapularis] gi|239922631|gb|EER22655.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes scapularis] Length = 567 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 113/224 (50%), Gaps = 5/224 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 + LEK + Y+F N+ LL +AL+H S+ ++ + YERLEFLGD +L L+I+ +L Sbjct: 2 ESFEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEIL 61 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F +F + EG L+ + LV ET V +L L +I ++ + + Sbjct: 62 FKNFANYNEGNLAKIRSYLVCKETICMVGAKLALKDYIIMTHGEEVVGGRDNPNNIENAT 121 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+LIAA+YLD IE + K W++ D KT LQEWA A P Y++ Sbjct: 122 EALIAAIYLDSNIETTHNIIGKLWEEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIK 181 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 R G H FTV+V++ G S + AE+ AA +L R Sbjct: 182 REGAAHSSTFTVLVKVKDYEQ-TGTGHSIKEAEKNAARSLLHRL 224 >gi|289662799|ref|ZP_06484380.1| ribonuclease III [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670321|ref|ZP_06491396.1| ribonuclease III [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 227 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 114/226 (50%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+A R IG+AFA+ +LL +AL H S + ERLEFLGD I+ LLI+ L+ Sbjct: 1 MAANRTFQRGDLIGHAFADPALLAQALRHRSAGTPH---NERLEFLGDGIVNLLIAEALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + A EG L+ LV + + R L+L + + K SI AD VE Sbjct: 58 QRWPKADEGALTRARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++AA+YLD G E V +++ AL GK +D KT LQEW A+ P Y + Sbjct: 118 AIVAAIYLDCGFERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALI 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 SG +H +F V + A A+G S+R AEQ AA V+ + Sbjct: 178 SESGDEHAKQFHVACILEQPTARAEGQGTSRRLAEQQAATLVIAQL 223 >gi|197122613|ref|YP_002134564.1| ribonuclease III [Anaeromyxobacter sp. K] gi|196172462|gb|ACG73435.1| Ribonuclease III [Anaeromyxobacter sp. K] Length = 383 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 74/212 (34%), Positives = 113/212 (53%), Gaps = 6/212 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHF 63 LE R+G A +R ALTH S + ++E ERLEFLGD ++ L +S L F Sbjct: 27 ALEARLGIAVTDRQAALAALTHKSYVNEHREDGLQDNERLEFLGDAVIDLAVSHRLMERF 86 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 SA+EG+LS ++V + + +AR LDL + +R+ +S+ AD +E++I Sbjct: 87 PSAREGDLSKMRAAVVDEQGLAGMARALDLGTLLRLGRGEELTGGRQKSSLLADAMEAVI 146 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+Y G+ FVD++ + + +G RD KT+LQE + ++ TP Y+V Sbjct: 147 AAVYQGQGLPAVLCFVDRFLGEAFARAAAGTLDRDFKTQLQELSQSRLRATPRYRVVAEH 206 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 GPDH F V ++ G +G SK+ AEQ Sbjct: 207 GPDHSKTFEVETDLRGEVLGRGAGRSKKDAEQ 238 >gi|57866684|ref|YP_188382.1| ribonuclease III [Staphylococcus epidermidis RP62A] gi|242242516|ref|ZP_04796961.1| ribonuclease III [Staphylococcus epidermidis W23144] gi|73917583|sp|Q5HPV8|RNC_STAEQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|57637342|gb|AAW54130.1| ribonuclease III [Staphylococcus epidermidis RP62A] gi|242234024|gb|EES36336.1| ribonuclease III [Staphylococcus epidermidis W23144] gi|319401475|gb|EFV89685.1| ribonuclease III [Staphylococcus epidermidis FRI909] Length = 245 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 +++ K +G F N L ++A +HSS + + E ERLEFLGD +L L +S LF Sbjct: 16 KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG L+ ++V + A ++ L I + K S+ +D E Sbjct: 76 DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179 + + ALYLD G++ TF +K D KT+ QE+ H++ Y++ Sbjct: 136 AFVGALYLDQGLDTVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGDVTYQLIK 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H FT V + A A+G +K+ +EQ AA + K Sbjct: 196 EEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYK 237 >gi|310815100|ref|YP_003963064.1| ribonuclease III [Ketogulonicigenium vulgare Y25] gi|308753835|gb|ADO41764.1| ribonuclease III [Ketogulonicigenium vulgare Y25] Length = 228 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 88/213 (41%), Positives = 121/213 (56%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 R+G+ F N +L +ALTH S S + +RLEFLGDR+LGL+++ L A E Sbjct: 10 FADRLGHRFINTEVLMRALTHGSASSPDRSDNQRLEFLGDRVLGLVVAEALLAADKFATE 69 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+++ RFN LV ETC++VAR +DL + +R+ K ++ AD +E++IAA+YL Sbjct: 70 GQIAPRFNRLVRRETCAEVARAMDLGAALRIGRSEMKTGGRKKEAVLADAMEAVIAAVYL 129 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 D G + A + V K+W RDAKT LQEWA + P Y RSGPDH P Sbjct: 130 DAGFDAAKSVVLKHWAAHIANVDDDARDAKTALQEWAQGRGETPPAYIEEARSGPDHAPI 189 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 FTV V + A G SKR AE AA ++L+ Sbjct: 190 FTVRVTLQSGPTATGEAGSKRLAEHAAATKLLQ 222 >gi|307823639|ref|ZP_07653868.1| ribonuclease III [Methylobacter tundripaludum SV96] gi|307735624|gb|EFO06472.1| ribonuclease III [Methylobacter tundripaludum SV96] Length = 227 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 74/220 (33%), Positives = 115/220 (52%), Gaps = 6/220 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L K++G F N L ALTH S S + + ERLEFLGD ILG +I+ LF F Sbjct: 4 KPEELCKKLGLKFNNPQLFTMALTHRSASSN---NNERLEFLGDSILGFVIAQKLFELFP 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EG LS SLV+ + +++AR+ L ++ + S K SI +D VE++I Sbjct: 61 GACEGVLSRLRASLVNQGSLAELARKHQLGDYLLLGSGELKSGGFRRDSILSDAVEAIIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALY D G++ + ++ + + ++ L +++D KT+LQE ++ P+Y + SG Sbjct: 121 ALYNDQGMDASQQWILQLFAEKLKSLSLDNWQKDPKTQLQELMQSRKMELPDYTLMTMSG 180 Query: 183 PDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLK 221 H+ F V P G S++ AEQ AA +L+ Sbjct: 181 LAHEQTFKVKCTTPLTAEPCIGTGNSRKKAEQSAAELMLE 220 >gi|46445908|ref|YP_007273.1| putative ribonuclease III [Candidatus Protochlamydia amoebophila UWE25] gi|81627660|sp|Q6MEK1|RNC_PARUW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|46399549|emb|CAF22998.1| putative Ribonuclease III [Candidatus Protochlamydia amoebophila UWE25] Length = 242 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 72/219 (32%), Positives = 110/219 (50%), Gaps = 9/219 (4%) Query: 1 MSALRYS-----TLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILG 52 M+ + + +E ++GY F + LL A H S + +E ERLEFLGD +LG Sbjct: 8 MNPIEHVIRQAPAIEAKLGYTFKDPQLLVLAFVHRSFINENREVNQHNERLEFLGDSVLG 67 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 +LIS L+ EG+LS + LV A +C + LDL+ ++ + R + Sbjct: 68 MLISDYLYCKLPKTPEGQLSYLRSRLVEASSCVHYIQSLDLSGYLLLGKGERMNDGRGRE 127 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGV 171 SI AD+ E++I A+YLDGG++ A F+ K + Q + R+ K LQ++ + Sbjct: 128 SILADLFEAIIGAIYLDGGLQAAKDFLFKNFHQHIEIILATPLRNWKALLQDYCQKNYQQ 187 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 TP Y+V SGPDH F + V I +G SK+ Sbjct: 188 TPLYQVLHESGPDHSKVFQISVWIQDRELGRGKGTSKKE 226 >gi|209964796|ref|YP_002297711.1| ribonuclease III [Rhodospirillum centenum SW] gi|209958262|gb|ACI98898.1| ribonuclease III [Rhodospirillum centenum SW] Length = 236 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 82/207 (39%), Positives = 109/207 (52%), Gaps = 3/207 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFNH 62 S LE +GY F +R LL +ALTH S+ + YERLEFLGDR+LGL+I+ L Sbjct: 11 LSELETGLGYHFRHRDLLVQALTHPSLGGVERNAGRGYERLEFLGDRVLGLVIAEWLLER 70 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F + EG L+ R +LV AE + VA + L F+R++ R +I AD E++ Sbjct: 71 FPAEAEGALARRHTALVRAEALTVVAETIGLGPFLRLAPSERDSGGQAKPAILADACEAV 130 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I A++ DGG+E A T + W +D KT LQEWA + P Y+ R G Sbjct: 131 IGAIFQDGGLEPARTLIRTRWTPLIEADLSPPQDPKTALQEWALGRGRPLPAYETLSREG 190 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDH P F V V + G PA SKR Sbjct: 191 PDHAPVFRVRVRVEGAEPATATGPSKR 217 >gi|170289493|ref|YP_001739731.1| ribonuclease III [Thermotoga sp. RQ2] gi|238688867|sp|B1LCY9|RNC_THESQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|170176996|gb|ACB10048.1| Ribonuclease III [Thermotoga sp. RQ2] Length = 240 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 11/228 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58 +K+ G F N LL +AL HSS ++ ES E+LEFLGD +L L + + Sbjct: 9 VEEFQKKTGINFKNEELLFRALCHSSYANEQNQAGRKNVESNEKLEFLGDAVLELFVCEI 68 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + A+ G+L+ ++ S E + V+R+++L F+ + K SI AD Sbjct: 69 LYKKYPEAEVGDLARVKSAAASEEVLALVSRKMNLGKFLFLGKGEEKTGGRDRDSILADA 128 Query: 119 VESLIAALYLDGGIEVAGTFVDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 E+L+AA+YLD G E ++ ++ ++ +K G+ D KT LQE ++ V PEY Sbjct: 129 FEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMK-GEMLFDYKTALQEIVQSEHKVPPEY 187 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + D D F V V + G A G +K+ AE+ AA ++ Sbjct: 188 VLVRTEKNDGDRIFVVEVRVDGKTIATGRGRTKKEAEKEAARIAYEKL 235 >gi|15838837|ref|NP_299525.1| ribonuclease III [Xylella fastidiosa 9a5c] gi|9107400|gb|AAF85045.1|AE004037_6 ribonuclease III [Xylella fastidiosa 9a5c] Length = 212 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 74/210 (35%), Positives = 106/210 (50%), Gaps = 6/210 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F + SLL +AL H S + ERLEFLGD ++ LLI+ LF + A EG L+ + Sbjct: 2 FTDPSLLLQALRHCSAGTPH---NERLEFLGDSVVNLLIAEALFQRWPRADEGALTRARS 58 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 LV + + +AR + L + + K SI AD VE++IAA+YLD + Sbjct: 59 ELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVEAVIAAIYLDADLATCR 118 Query: 137 TFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 T V +++ AL GK +D KT LQEW A+ P Y++ F SG H F V Sbjct: 119 TVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELIFESGDPHTKHFRVSCT 178 Query: 195 ISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 + L +G S+R AEQ AA+ + + Sbjct: 179 LGELKLRTEGEGSSRRLAEQDAASHAIDQL 208 >gi|95930677|ref|ZP_01313411.1| Ribonuclease III [Desulfuromonas acetoxidans DSM 684] gi|95133329|gb|EAT14994.1| Ribonuclease III [Desulfuromonas acetoxidans DSM 684] Length = 244 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 5/208 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLF 60 S E+R+GY F +R L+ AL H S ++ ER EFLGD +L L+++ LF Sbjct: 12 ELSQFEERLGYRFTDRHYLQTALIHKSYANEQLRDPAACNERQEFLGDAVLDLVMADYLF 71 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EGELS + LVSA ++VAR L+L +++ R+ ++ AD +E Sbjct: 72 CTYPQLPEGELSRIRSELVSARALAKVARRLNLGPCLKLGRGERRSGGQDKDNLLADALE 131 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179 ++ A++LD G +VA + + ++ A+++ + + D KT QE A A+FG PEY++ Sbjct: 132 AVFGAVFLDAGWDVARDVLGRMFEGTAVQAARRKSLDYKTRFQELAQARFGAAPEYELVA 191 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 GPDH +TV+V G QG S Sbjct: 192 TEGPDHQREYTVIVSCEGRHLGQGSGGS 219 >gi|254481213|ref|ZP_05094458.1| ribonuclease III [marine gamma proteobacterium HTCC2148] gi|214038376|gb|EEB79038.1| ribonuclease III [marine gamma proteobacterium HTCC2148] Length = 232 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 74/210 (35%), Positives = 116/210 (55%), Gaps = 6/210 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L++ +GY FA++SLL+ ALTH S+ + ERLEFLGD I+ +I+ L+ F A Sbjct: 9 ERLQRALGYQFADKSLLQLALTHRSVG---GRNNERLEFLGDSIVNHIIAEALYRQFPDA 65 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG++S SLV +T ++VARELDL + + RK SI AD +E++ A+ Sbjct: 66 REGDMSRMRASLVKGDTLAEVARELDLGEHLLLGPGERKSGGKRRGSILADGLEAVAGAI 125 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +D + + V ++++R L +DAKT LQE+ + PEY++ G D Sbjct: 126 LIDSDVAACRSCVLTWFRERLDLLSLDGADKDAKTLLQEYLQGRRSPLPEYELLGVVGED 185 Query: 185 HDPRFTVVVEISG-LAPAQGMDCSKRAAEQ 213 H+ +F V I+ + +G S+R AEQ Sbjct: 186 HEQQFHVACRIAKPVLVVEGDGSSRRKAEQ 215 >gi|27066029|pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From Thermotoga Maritima At 2.0 A Resolution gi|27066030|pdb|1O0W|B Chain B, Crystal Structure Of Ribonuclease Iii (Tm1102) From Thermotoga Maritima At 2.0 A Resolution Length = 252 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 11/228 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58 +K G F N LL +AL HSS ++ ES E+LEFLGD +L L + + Sbjct: 21 VEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEI 80 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + A+ G+L+ ++ S E + V+R+++L F+ + K SI AD Sbjct: 81 LYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADA 140 Query: 119 VESLIAALYLDGGIEVAGTFVDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 E+L+AA+YLD G E ++ ++ ++ +K G+ D KT LQE ++ V PEY Sbjct: 141 FEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMK-GEMLFDYKTALQEIVQSEHKVPPEY 199 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + D D F V V ++G A G +K+ AE+ AA ++ Sbjct: 200 ILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL 247 >gi|268608881|ref|ZP_06142608.1| ribonuclease III [Ruminococcus flavefaciens FD-1] Length = 229 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 120/224 (53%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 + E IGY F N+ L+E+AL+HSS ++ + S ERLEFLGD +L +++S L+ Sbjct: 3 KTEEFENIIGYTFKNKELIEQALSHSSYANEKKRAGGSNERLEFLGDSVLSIVVSDYLYK 62 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ SLV ++ A++++L F+ + SI AD E+ Sbjct: 63 NI-NVPEGELTKMRASLVCEKSLFVFAQQIELGEFLHLGKGEENTGGRERPSILADAFEA 121 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFR 180 +IAA+YLDGG+E A + ++ + ++ K D KT LQE EY + Sbjct: 122 VIAAIYLDGGMEAAAKHILRFMPEDIKRTKKPVLSDFKTLLQEVVQKNPEEKVEYVLIGE 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH+ RF V V ++ +G SK+ AEQ+AA E L+ G Sbjct: 182 EGPDHNKRFVVEVCLNSQVIGKGKGKSKKEAEQLAAKEALELMG 225 >gi|258405510|ref|YP_003198252.1| ribonuclease III [Desulfohalobium retbaense DSM 5692] gi|257797737|gb|ACV68674.1| ribonuclease III [Desulfohalobium retbaense DSM 5692] Length = 237 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIST 57 M +++R+ Y F ++ LL ALTHSS ++ + QE ERLEFLGD +L L IS Sbjct: 1 MDDSVLRLVQQRLQYTFRDQQLLLLALTHSSYANEHPHIQEHNERLEFLGDAVLELAISE 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ + A EG L+ + LVS + + R+L++A + + +I D Sbjct: 61 ELYLRYPEAPEGSLTSLRSKLVSEPALAALGRQLEIAPALFLGRGEESQGGRERDAILCD 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTP 173 V+ES+ A++LD + A T + + + + + RD K+ LQE F P Sbjct: 121 VMESIFGAIFLDSDYDRAKTCILELYVDKWPSAPSLGHERLRDFKSRLQECTQQLFKDRP 180 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y + +GP+H + V V++ + A D S + AEQ AA + L+ Sbjct: 181 VYHLVDSTGPEHAKVYHVRVDLPNGSQASAADSSVKKAEQQAARKALE 228 >gi|291459099|ref|ZP_06598489.1| ribonuclease III [Oribacterium sp. oral taxon 078 str. F0262] gi|291418353|gb|EFE92072.1| ribonuclease III [Oribacterium sp. oral taxon 078 str. F0262] Length = 234 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 6/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 R S LE+++ Y+F +R LL ALTH S S+ + S +RLEFLGD +L L S L+ Sbjct: 3 RLSLLEEKLAYSFRDRELLLHALTHPSYSNEQGDPKEASNQRLEFLGDAVLELAASDFLY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + +EG ++ +LV T ++ AR+L L ++ + ++ S+ +D E Sbjct: 63 HRVPVIQEGVMTKLRAALVCEPTLAEAARKLSLGDYLVLGRGEGREGIQLRDSVLSDAFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++I A+YLDGG A F+ + +++ RDAKT LQE+ + Y + Sbjct: 123 AVIGAIYLDGGFSAAQCFIKRLVLS-DIENKSLYRDAKTMLQEYVSKQRLSL-RYALLEE 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGP H+ + V I +G SK+ AEQ AA + L + Sbjct: 181 SGPCHERFYRVSALIEEKEYGRGEGSSKKKAEQAAAYQALLK 222 >gi|329724352|gb|EGG60864.1| ribonuclease III [Staphylococcus epidermidis VCU144] Length = 249 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 +++ K +G F N L ++A +HSS + + E ERLEFLGD +L L +S LF Sbjct: 16 KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG L+ ++V + A ++ L I + K S+ +D E Sbjct: 76 DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179 + + ALYLD G++ TF +K D KT+ QE+ H++ Y++ Sbjct: 136 AFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGDVTYQLIK 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H FT V + A A+G +K+ +EQ AA + K Sbjct: 196 EEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYK 237 >gi|317484890|ref|ZP_07943780.1| ribonuclease III [Bilophila wadsworthia 3_1_6] gi|316923872|gb|EFV45068.1| ribonuclease III [Bilophila wadsworthia 3_1_6] Length = 233 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 5/226 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLF 60 + L+ RIGY F + SLL A+THSS ++ + ERLEFLGD +L + +S LF Sbjct: 1 MTLDVLQDRIGYRFKDESLLVLAVTHSSWANEHSAGNAHNERLEFLGDAVLEIAVSAQLF 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A+EGEL+ +SLV+ T + +AR+L L +R++ S+ +D +E Sbjct: 61 ARFPDAREGELTRLRSSLVNEATLAVIARKLHLDDCLRLARGEENQGGRQRDSLLSDAME 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ +++DGGIE A V++ + K+ R+D KT+LQE P Y + Sbjct: 121 AVFGGVFVDGGIEKARAVVERLYTDLWPKNATKVRRKDFKTKLQEATQRISKGLPVYALE 180 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP+H F+V V++ + + AEQ AA L G Sbjct: 181 DSYGPEHAKIFSVRVDLPDGRQFRASGPGLKRAEQEAAHVALVALG 226 >gi|160915457|ref|ZP_02077668.1| hypothetical protein EUBDOL_01465 [Eubacterium dolichum DSM 3991] gi|158432577|gb|EDP10866.1| hypothetical protein EUBDOL_01465 [Eubacterium dolichum DSM 3991] Length = 227 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 112/227 (49%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIST 57 M + + L++R G N+ + +ALTHSS + ++ ERLEF+GD +L L + Sbjct: 1 MDTI-FEWLKQR-GIQIENKERMVEALTHSSYVNEHKASKHDNERLEFMGDAVLQLWSTR 58 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF+ + EG+++ LV E + R L ++ + K S+ AD Sbjct: 59 KLFHLTPALSEGQMTTLRAQLVCEEALAAYNRTLGWGKYLLLGVGEEKTGGRNRDSLLAD 118 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176 + E+++ A+YLD G+E ++ + + D KT+LQE+ A Y+ Sbjct: 119 MFEAVLGAIYLDQGMEAVDIILESVLTPAITQPKSESVIDYKTKLQEYIQADTRKNVHYE 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + SGP + P F V+V++ + +G+ SK+ AEQ+AA + ++ Sbjct: 179 LVSTSGPSNAPIFEVIVKLEDIIMGKGVGNSKKRAEQMAAKDAFEKM 225 >gi|116620923|ref|YP_823079.1| RNAse III [Candidatus Solibacter usitatus Ellin6076] gi|122255019|sp|Q027L3|RNC_SOLUE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116224085|gb|ABJ82794.1| RNAse III [Candidatus Solibacter usitatus Ellin6076] Length = 271 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 111/232 (47%), Gaps = 17/232 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLL 59 LE ++ Y F + LL +ALTHSS+++ + E+LEFLGD +LG LI+ L Sbjct: 8 LELKLDYRFNDPELLRRALTHSSLANENRPGAGVGSPLNDNEQLEFLGDSVLGFLIAEAL 67 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F EG+LS LVSA VAR LDL S++ + ++ D + Sbjct: 68 VRRFPEYHEGDLSRLKAHLVSAAHLHGVARRLDLGSYLELGRSEEMSGGRTKKTLLVDGL 127 Query: 120 ESLIAALYLDGGIEVAGTFVDKYW--------KQRALKSGKFRRDAKTELQEWAHAKFGV 171 E+++AA+YLDGG++ A FV + ++ + K+ LQE A + Sbjct: 128 EAIMAAIYLDGGVDAARAFVATHVLDAPFFGDEEAGTDIQPAITNFKSALQELAQTRRLP 187 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P Y V GP+H FTV V + AQ +K+ A Q AA + +R Sbjct: 188 QPRYSVVRERGPEHSKTFTVEVRVGKEWTAQAEGRTKKIAAQRAARGLYERL 239 >gi|104783263|ref|YP_609761.1| ribonuclease III [Pseudomonas entomophila L48] gi|122402118|sp|Q1I5V8|RNC_PSEE4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|95112250|emb|CAK16977.1| ribonuclease III, ds RNA [Pseudomonas entomophila L48] Length = 229 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 76/216 (35%), Positives = 109/216 (50%), Gaps = 7/216 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MSA LE+++GY F N+ + ALTH S + + ERLEFLGD IL ++ LF Sbjct: 1 MSA-SLDRLERKLGYTFKNQDQMLLALTHRSYA---GRNNERLEFLGDAILNFVVGEALF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A+EG+LS LV ET +++AR DL ++R+ S K SI AD +E Sbjct: 57 ERFPQAREGQLSRLRARLVKGETLARLARGFDLGDYLRLGSGELKSGGFRRESILADALE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+Y D ++ A + + L +D KT LQE+ ++ P Y+V Sbjct: 117 ALIGAIYQDADMQTARERILAWLTDEFDGLTLVDTNKDPKTRLQEFLQSRACELPRYEVV 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V E+ L ++G S+R AEQ Sbjct: 177 DIQGEPHCRTFFVECEVVLLNKKSRGQGVSRRIAEQ 212 >gi|194366747|ref|YP_002029357.1| ribonuclease III [Stenotrophomonas maltophilia R551-3] gi|194349551|gb|ACF52674.1| Ribonuclease III [Stenotrophomonas maltophilia R551-3] Length = 226 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 74/217 (34%), Positives = 113/217 (52%), Gaps = 7/217 (3%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 IG+AF++ +LL++ALTH S + ERLEFLGD I+ ++ + L+ + A EG Sbjct: 10 DLIGHAFSDPALLKQALTHRSAGAPH---NERLEFLGDSIVNMMAAEALYRRWPKADEGA 66 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 ++ LV + + R L+L + + K SI AD VE+++AA+YLD Sbjct: 67 MTRARAELVREGALAVIGRTLELGERLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDA 126 Query: 131 GIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G E V ++ + SG+ +D KT LQEW A+ P+Y++ SG DH Sbjct: 127 GFEACRAVVLPWFSASIEALPASGRPEKDPKTRLQEWLQARQKALPQYELVSESGDDHAK 186 Query: 188 RFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V ++ A +G S+R AEQ AAA VL++ Sbjct: 187 HFRVRCIVADPAASTEGEGASRRLAEQQAAAAVLEQL 223 >gi|304392070|ref|ZP_07374012.1| ribonuclease III [Ahrensia sp. R2A130] gi|303296299|gb|EFL90657.1| ribonuclease III [Ahrensia sp. R2A130] Length = 244 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 114/227 (50%), Positives = 154/227 (67%), Gaps = 2/227 (0%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLL 59 S R + LE+ IGY FA+ L++ALTH+S + ++ YERLEFLGDR+LG+ I+ +L Sbjct: 6 STNRIAELEELIGYTFASHDRLKRALTHASATRKPGDNSHYERLEFLGDRVLGVCIAEML 65 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F +A EGELSVR N+LVS +TC+ +A E+ L +FI +D++ M S++ADVV Sbjct: 66 FETFPTAPEGELSVRLNALVSGKTCAAIADEIGLHAFITTGNDVKHVTGKRMRSVRADVV 125 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ES+IAA+YLDGG+E A F+ +YW R ++G RD+KT LQEWAH G TP Y + Sbjct: 126 ESVIAAIYLDGGLEPARDFITRYWAGRLHETGAGIRDSKTALQEWAHTHSGETPVYTLVE 185 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 ++GPDHDP F + V I G++ G SKRAAEQ AA VL REG+W Sbjct: 186 KTGPDHDPLFKISVAIHGVSGGNGAGRSKRAAEQAAARAVLLREGVW 232 >gi|227543196|ref|ZP_03973245.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51866] gi|227181005|gb|EEI61977.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51866] Length = 250 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 110/220 (50%), Gaps = 6/220 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + ++ L +++G + LL ALTH S ++ + ERLEFLGD +LG ++ LF Sbjct: 20 VDHAPLLEKLGTTVS-PELLRLALTHRSFANENGGLPNNERLEFLGDSVLGCSVAWKLFE 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + S+ E +S +VS + +ARE+ L +I + SI AD E+ Sbjct: 79 TYPSSPESVISKMRARIVSRFGLADIAREIGLGKYILLGRGEILTDGREKDSILADTTEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L A++L+ G E A + + ++ + + D KT LQE A + PEY+ +F Sbjct: 139 LFGAIFLEHGFETARHTILTLFHEKIVHASSDSIHTDWKTLLQERAAERKLPMPEYEASF 198 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +GPDHD FT I G G +K+AAEQ+AA + Sbjct: 199 -TGPDHDRFFTATAIIDGKVVGTGQGHNKKAAEQLAAKQA 237 >gi|82750837|ref|YP_416578.1| ribonuclease III [Staphylococcus aureus RF122] gi|90101646|sp|Q2YXI3|RNC_STAAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|82656368|emb|CAI80786.1| Ribonuclease III [Staphylococcus aureus RF122] Length = 243 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 106/224 (47%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 R+ T +G+ + N L ++A +HSS + + + ERLEFLGD +L L +S LF Sbjct: 16 RFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG L+ ++V + A ++ L I + K S+ +DV E Sbjct: 76 DKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDVFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G+++ F +K ++ D KT+ QE+ H + Y + Sbjct: 136 AFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNLIK 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H FT V + G A A+G +K+ +EQ AA K+ Sbjct: 196 EEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQL 239 >gi|259503531|ref|ZP_05746433.1| ribonuclease III [Lactobacillus antri DSM 16041] gi|259168609|gb|EEW53104.1| ribonuclease III [Lactobacillus antri DSM 16041] Length = 232 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 104/229 (45%), Gaps = 7/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56 M L K F++ LL +A T +S + + YER+EFLGD +L L++S Sbjct: 1 MIEELQDYLAKEFDIHFSDPRLLAEAFTQASYVNEHPNQNLKFYERIEFLGDAVLELIVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ + +G L+ ++V ++ S+ A+E +IR+ + Sbjct: 61 EYIYKRYPELPQGRLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEELAGARQRPGLLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ ES + ALYLD G FV + + L G F DAKT LQE+ V E Sbjct: 121 DIFESFVGALYLDQGRPAVEKFVQRVIFPK-LDMGWFDHAVDAKTSLQEFLQRDGDVLIE 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y + SG +++P F V V G A G SK+ AE AA LK+ Sbjct: 180 YHLLEESGTENNPAFHVDVAADGQVIADGQGSSKKQAEMQAAQRALKKL 228 >gi|15926816|ref|NP_374349.1| ribonuclease III [Staphylococcus aureus subsp. aureus N315] gi|21282845|ref|NP_645933.1| ribonuclease III [Staphylococcus aureus subsp. aureus MW2] gi|49483396|ref|YP_040620.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA252] gi|49486072|ref|YP_043293.1| ribonuclease III [Staphylococcus aureus subsp. aureus MSSA476] gi|57651802|ref|YP_186108.1| ribonuclease III [Staphylococcus aureus subsp. aureus COL] gi|87160069|ref|YP_493823.1| ribonuclease III [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194940|ref|YP_499740.1| ribonuclease III [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267724|ref|YP_001246667.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH9] gi|150393782|ref|YP_001316457.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH1] gi|151221355|ref|YP_001332177.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newman] gi|161509405|ref|YP_001575064.1| ribonuclease III [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142023|ref|ZP_03566516.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315591|ref|ZP_04838804.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731850|ref|ZP_04866015.1| RNase III [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733529|ref|ZP_04867694.1| RNase III [Staphylococcus aureus subsp. aureus TCH130] gi|257425287|ref|ZP_05601712.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053] gi|257427947|ref|ZP_05604345.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322] gi|257430580|ref|ZP_05606962.1| ribonuclease III [Staphylococcus aureus subsp. aureus 68-397] gi|257433341|ref|ZP_05609699.1| ribonuclease III [Staphylococcus aureus subsp. aureus E1410] gi|257436183|ref|ZP_05612230.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876] gi|257795711|ref|ZP_05644690.1| ribonuclease III [Staphylococcus aureus A9781] gi|258415935|ref|ZP_05682205.1| ribonuclease III [Staphylococcus aureus A9763] gi|258419682|ref|ZP_05682649.1| ribonuclease III [Staphylococcus aureus A9719] gi|258423926|ref|ZP_05686811.1| ribonuclease III [Staphylococcus aureus A9635] gi|258434853|ref|ZP_05688927.1| ribonuclease III [Staphylococcus aureus A9299] gi|258444571|ref|ZP_05692900.1| ribonuclease III [Staphylococcus aureus A8115] gi|258447596|ref|ZP_05695740.1| ribonuclease III [Staphylococcus aureus A6300] gi|258449438|ref|ZP_05697541.1| ribonuclease III [Staphylococcus aureus A6224] gi|258454817|ref|ZP_05702781.1| ribonuclease III [Staphylococcus aureus A5937] gi|262048131|ref|ZP_06021018.1| RNase III [Staphylococcus aureus D30] gi|262051862|ref|ZP_06024078.1| RNase III [Staphylococcus aureus 930918-3] gi|269202849|ref|YP_003282118.1| ribonuclease III [Staphylococcus aureus subsp. aureus ED98] gi|282892720|ref|ZP_06300955.1| ribonuclease III [Staphylococcus aureus A8117] gi|282903787|ref|ZP_06311675.1| ribonuclease III [Staphylococcus aureus subsp. aureus C160] gi|282905551|ref|ZP_06313406.1| ribonuclease III [Staphylococcus aureus subsp. aureus Btn1260] gi|282908526|ref|ZP_06316356.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910805|ref|ZP_06318608.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049] gi|282914009|ref|ZP_06321796.1| ribonuclease III [Staphylococcus aureus subsp. aureus M899] gi|282916483|ref|ZP_06324245.1| ribonuclease III [Staphylococcus aureus subsp. aureus D139] gi|282918931|ref|ZP_06326666.1| ribonuclease III [Staphylococcus aureus subsp. aureus C427] gi|282920016|ref|ZP_06327745.1| ribonuclease III [Staphylococcus aureus A9765] gi|282924054|ref|ZP_06331730.1| ribonuclease III [Staphylococcus aureus subsp. aureus C101] gi|282927574|ref|ZP_06335190.1| ribonuclease III [Staphylococcus aureus A10102] gi|283770295|ref|ZP_06343187.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus H19] gi|283957975|ref|ZP_06375426.1| ribonuclease III [Staphylococcus aureus subsp. aureus A017934/97] gi|284024157|ref|ZP_06378555.1| ribonuclease III [Staphylococcus aureus subsp. aureus 132] gi|293501041|ref|ZP_06666892.1| ribonuclease III [Staphylococcus aureus subsp. aureus 58-424] gi|293510001|ref|ZP_06668709.1| ribonuclease III [Staphylococcus aureus subsp. aureus M809] gi|293526589|ref|ZP_06671274.1| ribonuclease III [Staphylococcus aureus subsp. aureus M1015] gi|294848227|ref|ZP_06788974.1| ribonuclease III [Staphylococcus aureus A9754] gi|295407172|ref|ZP_06816973.1| ribonuclease III [Staphylococcus aureus A8819] gi|295427719|ref|ZP_06820351.1| ribonuclease III [Staphylococcus aureus subsp. aureus EMRSA16] gi|296274790|ref|ZP_06857297.1| ribonuclease III [Staphylococcus aureus subsp. aureus MR1] gi|297208123|ref|ZP_06924554.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245941|ref|ZP_06929800.1| ribonuclease III [Staphylococcus aureus A8796] gi|297591322|ref|ZP_06949960.1| ribonuclease III [Staphylococcus aureus subsp. aureus MN8] gi|300912203|ref|ZP_07129646.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH70] gi|304381203|ref|ZP_07363856.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54039243|sp|P66669|RNC_STAAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54041615|sp|P66668|RNC_STAAN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56749389|sp|Q6G9Y0|RNC_STAAS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56749418|sp|Q6GHK2|RNC_STAAR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|73917582|sp|Q5HGJ9|RNC_STAAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122539710|sp|Q2FZ50|RNC_STAA8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|123486215|sp|Q2FHK5|RNC_STAA3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043358|sp|A6U152|RNC_STAA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043359|sp|A5ISB8|RNC_STAA9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043360|sp|A6QGD3|RNC_STAAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043361|sp|A8Z3R9|RNC_STAAT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|13701033|dbj|BAB42328.1| RNase III [Staphylococcus aureus subsp. aureus N315] gi|21204284|dbj|BAB94981.1| RNase III [Staphylococcus aureus subsp. aureus MW2] gi|49241525|emb|CAG40211.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus MRSA252] gi|49244515|emb|CAG42944.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus MSSA476] gi|57285988|gb|AAW38082.1| ribonuclease III [Staphylococcus aureus subsp. aureus COL] gi|87126043|gb|ABD20557.1| ribonuclease III [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202498|gb|ABD30308.1| ribonuclease III, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740793|gb|ABQ49091.1| RNAse III [Staphylococcus aureus subsp. aureus JH9] gi|149946234|gb|ABR52170.1| Ribonuclease III [Staphylococcus aureus subsp. aureus JH1] gi|150374155|dbj|BAF67415.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newman] gi|160368214|gb|ABX29185.1| ribonuclease III [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724449|gb|EES93178.1| RNase III [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728583|gb|EES97312.1| RNase III [Staphylococcus aureus subsp. aureus TCH130] gi|257271744|gb|EEV03882.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053] gi|257274788|gb|EEV06275.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322] gi|257278708|gb|EEV09327.1| ribonuclease III [Staphylococcus aureus subsp. aureus 68-397] gi|257281434|gb|EEV11571.1| ribonuclease III [Staphylococcus aureus subsp. aureus E1410] gi|257284465|gb|EEV14585.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876] gi|257789683|gb|EEV28023.1| ribonuclease III [Staphylococcus aureus A9781] gi|257839271|gb|EEV63745.1| ribonuclease III [Staphylococcus aureus A9763] gi|257844267|gb|EEV68649.1| ribonuclease III [Staphylococcus aureus A9719] gi|257845955|gb|EEV69984.1| ribonuclease III [Staphylococcus aureus A9635] gi|257849214|gb|EEV73196.1| ribonuclease III [Staphylococcus aureus A9299] gi|257850064|gb|EEV74017.1| ribonuclease III [Staphylococcus aureus A8115] gi|257853787|gb|EEV76746.1| ribonuclease III [Staphylococcus aureus A6300] gi|257857426|gb|EEV80324.1| ribonuclease III [Staphylococcus aureus A6224] gi|257863200|gb|EEV85964.1| ribonuclease III [Staphylococcus aureus A5937] gi|259160263|gb|EEW45291.1| RNase III [Staphylococcus aureus 930918-3] gi|259163697|gb|EEW48252.1| RNase III [Staphylococcus aureus D30] gi|262075139|gb|ACY11112.1| ribonuclease III [Staphylococcus aureus subsp. aureus ED98] gi|269940725|emb|CBI49106.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus TW20] gi|282314026|gb|EFB44418.1| ribonuclease III [Staphylococcus aureus subsp. aureus C101] gi|282316741|gb|EFB47115.1| ribonuclease III [Staphylococcus aureus subsp. aureus C427] gi|282319923|gb|EFB50271.1| ribonuclease III [Staphylococcus aureus subsp. aureus D139] gi|282322077|gb|EFB52401.1| ribonuclease III [Staphylococcus aureus subsp. aureus M899] gi|282325410|gb|EFB55719.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049] gi|282327588|gb|EFB57871.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330843|gb|EFB60357.1| ribonuclease III [Staphylococcus aureus subsp. aureus Btn1260] gi|282590577|gb|EFB95654.1| ribonuclease III [Staphylococcus aureus A10102] gi|282594732|gb|EFB99716.1| ribonuclease III [Staphylococcus aureus A9765] gi|282595405|gb|EFC00369.1| ribonuclease III [Staphylococcus aureus subsp. aureus C160] gi|282764717|gb|EFC04842.1| ribonuclease III [Staphylococcus aureus A8117] gi|283460442|gb|EFC07532.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus H19] gi|283470446|emb|CAQ49657.1| ribonuclease III [Staphylococcus aureus subsp. aureus ST398] gi|283790124|gb|EFC28941.1| ribonuclease III [Staphylococcus aureus subsp. aureus A017934/97] gi|285816915|gb|ADC37402.1| Ribonuclease III [Staphylococcus aureus 04-02981] gi|290920661|gb|EFD97724.1| ribonuclease III [Staphylococcus aureus subsp. aureus M1015] gi|291096046|gb|EFE26307.1| ribonuclease III [Staphylococcus aureus subsp. aureus 58-424] gi|291466945|gb|EFF09463.1| ribonuclease III [Staphylococcus aureus subsp. aureus M809] gi|294825027|gb|EFG41449.1| ribonuclease III [Staphylococcus aureus A9754] gi|294968025|gb|EFG44053.1| ribonuclease III [Staphylococcus aureus A8819] gi|295128077|gb|EFG57711.1| ribonuclease III [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887366|gb|EFH26268.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177105|gb|EFH36359.1| ribonuclease III [Staphylococcus aureus A8796] gi|297576208|gb|EFH94924.1| ribonuclease III [Staphylococcus aureus subsp. aureus MN8] gi|298694526|gb|ADI97748.1| Ribonuclease III [Staphylococcus aureus subsp. aureus ED133] gi|300886449|gb|EFK81651.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH70] gi|302332837|gb|ADL23030.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus JKD6159] gi|302751056|gb|ADL65233.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340186|gb|EFM06127.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438389|gb|ADQ77460.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH60] gi|312829627|emb|CBX34469.1| ribonuclease III [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131026|gb|EFT87010.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS03] gi|315194121|gb|EFU24514.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS00] gi|315198472|gb|EFU28801.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS01] gi|320140951|gb|EFW32798.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA131] gi|320144334|gb|EFW36100.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA177] gi|323441008|gb|EGA98715.1| ribonuclease III [Staphylococcus aureus O11] gi|323442325|gb|EGA99955.1| ribonuclease III [Staphylococcus aureus O46] gi|329313902|gb|AEB88315.1| Ribonuclease 3 [Staphylococcus aureus subsp. aureus T0131] gi|329724757|gb|EGG61262.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21189] gi|329727692|gb|EGG64148.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21172] gi|329733624|gb|EGG69952.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21193] Length = 243 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 R+ T +G+ + N L ++A +HSS + + + ERLEFLGD +L L +S LF Sbjct: 16 RFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG L+ ++V + A ++ L I + K S+ +D E Sbjct: 76 DKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G+++ F +K ++ D KT+ QE+ H + Y + Sbjct: 136 AFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNLIK 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H FT V + G A A+G +K+ +EQ AA K+ Sbjct: 196 EEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQL 239 >gi|328955642|ref|YP_004372975.1| RNAse III [Coriobacterium glomerans PW2] gi|328455966|gb|AEB07160.1| RNAse III [Coriobacterium glomerans PW2] Length = 241 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 113/225 (50%), Gaps = 3/225 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLF 60 + + E+ + FA+R LL ALTH S SYERLEFLGD ILG +++ LF Sbjct: 4 SEKLRAAEQICHHRFADRQLLRCALTHPSAVEGQPVCASYERLEFLGDSILGAIVAVALF 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + S EG L+ SLVS S V EL + I + M S +V E Sbjct: 64 NSYPSIDEGRLTRLKVSLVSGAMLSDVGLELGIDRCIIFGASETGTGARGMHSALENVYE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179 SL+AA+YLDGG +VA F+ + + + K+ LQE G P YK+ Sbjct: 124 SLVAAMYLDGGWDVAEAFILRTLEPHLADDRPESVSNPKSILQERVQEDHGEPPCYKLVG 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H+P FT VV + G+ +G SK+ AE AA + L+R G Sbjct: 184 MSGPAHEPTFTAVVLVDGVRCGRGTGSSKKEAEASAARDALERMG 228 >gi|293366802|ref|ZP_06613478.1| ribonuclease III [Staphylococcus epidermidis M23864:W2(grey)] gi|291319103|gb|EFE59473.1| ribonuclease III [Staphylococcus epidermidis M23864:W2(grey)] gi|329736553|gb|EGG72819.1| ribonuclease III [Staphylococcus epidermidis VCU045] Length = 245 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 +++ K +G F N L ++A +HSS + + E ERLEFLGD +L L +S LF Sbjct: 16 KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG L+ ++V + A ++ L I + K S+ +D E Sbjct: 76 DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179 + + ALYLD G++ TF +K D KT+ QE+ H++ Y++ Sbjct: 136 AFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGDVTYQLIK 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H FT V + A A+G +K+ +EQ AA + K Sbjct: 196 EEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYK 237 >gi|297559194|ref|YP_003678168.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843642|gb|ADH65662.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 248 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 110/219 (50%), Gaps = 6/219 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + IG + +L +ALTH S ++ + ERLEFLGD +LGL+++ LF Sbjct: 11 KAFHQAIGVE-VDPKILLRALTHRSYAYEKGGLPTNERLEFLGDSVLGLVVTDTLFRKHP 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ ++V+ + VAR L + ++IR+ +SI AD +E++I Sbjct: 70 DLPEGQLAKLRAAVVNMRALADVARGLGVGAYIRLGRGEEGTGGRDKSSILADTLEAVIG 129 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G++VA FV + + + D KT LQE A+ PEY V SG Sbjct: 130 AVYLDRGLDVASEFVHRLFDPLIATASGLGAGLDWKTSLQELTAAEMLGVPEYHV-DESG 188 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 PDH F V ++G + G SK+ AEQ AA K Sbjct: 189 PDHQKTFRATVRVAGESYGLGEGRSKKEAEQQAAESAWK 227 >gi|227495870|ref|ZP_03926181.1| ribonuclease III [Actinomyces urogenitalis DSM 15434] gi|226834547|gb|EEH66930.1| ribonuclease III [Actinomyces urogenitalis DSM 15434] Length = 276 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 102/219 (46%), Gaps = 6/219 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 +L R G + LL+ ALTH S +H + ERLEFLGD +L ++++ LF Sbjct: 19 DLESLVYRWGCQIEDP-LLDLALTHRSWAHENGGLPTNERLEFLGDAVLQIIVTEDLFRD 77 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+L+ + VS + VAR+L L FI++ SI +D VE+L Sbjct: 78 HPEVPEGQLAKMRAATVSEPALAGVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEAL 137 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A YL G+E V + + ++ D KT LQE A +P Y+VT Sbjct: 138 IGATYLTVGLEPVREVVLRLVSRFLTEAPSRGAGLDWKTSLQELAAVHRLGSPSYRVTSV 197 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH FT V + G +G SK+ AE AA Sbjct: 198 -GPDHARVFTAVAVVDGQERGEGTGSSKKVAEHDAAEAA 235 >gi|125624543|ref|YP_001033026.1| ribonuclease III [Lactococcus lactis subsp. cremoris MG1363] gi|189043323|sp|A2RLZ8|RNC_LACLM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|124493351|emb|CAL98325.1| ribonuclease III [Lactococcus lactis subsp. cremoris MG1363] gi|300071337|gb|ADJ60737.1| ribonuclease III [Lactococcus lactis subsp. cremoris NZ9000] Length = 231 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 104/223 (46%), Gaps = 9/223 (4%) Query: 8 TLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 L+K++ G F + LL+ A THSS ++ + + ERLEFLGD L L+IS L Sbjct: 3 KLQKKLKNDYGLVFNDEYLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYL 62 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EGELS +S+V E+ + +R F+R+ K + ++ Sbjct: 63 YRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLF 122 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVT 178 E+ + AL++D G++ F+ + D KTELQE T YK+ Sbjct: 123 EAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVIDYKTELQEVLQIGGETTISYKIL 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP HD F V +G +G+ SK+ AEQ AA +K Sbjct: 183 KEEGPAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225 >gi|27467826|ref|NP_764463.1| RNase III [Staphylococcus epidermidis ATCC 12228] gi|251810663|ref|ZP_04825136.1| RNase III [Staphylococcus epidermidis BCM-HMP0060] gi|282876335|ref|ZP_06285202.1| ribonuclease III [Staphylococcus epidermidis SK135] gi|32129970|sp|Q8CPI1|RNC_STAES RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|27315371|gb|AAO04505.1|AE016747_2 RNase III [Staphylococcus epidermidis ATCC 12228] gi|251805823|gb|EES58480.1| RNase III [Staphylococcus epidermidis BCM-HMP0060] gi|281295360|gb|EFA87887.1| ribonuclease III [Staphylococcus epidermidis SK135] gi|329736334|gb|EGG72606.1| ribonuclease III [Staphylococcus epidermidis VCU028] Length = 245 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 +++ K +G F N L ++A +HSS + + E ERLEFLGD +L L +S LF Sbjct: 16 KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG L+ ++V + A ++ L I + K S+ +D E Sbjct: 76 DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179 + + ALYLD G++ TF +K D KT+ QE+ H++ Y++ Sbjct: 136 AFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGDVTYQLIK 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H FT V + A A+G +K+ +EQ AA + K Sbjct: 196 EEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYK 237 >gi|302878420|ref|YP_003846984.1| ribonuclease III [Gallionella capsiferriformans ES-2] gi|302581209|gb|ADL55220.1| ribonuclease III [Gallionella capsiferriformans ES-2] Length = 229 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 110/222 (49%), Gaps = 6/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+ L +++GY F LL++ALTH S + + ERLEFLGD ILG +I+ L++ Sbjct: 7 YTELCRQLGYVFIQPQLLQRALTHRSFA---PDHNERLEFLGDSILGCVIAKHLYSQHPD 63 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS ++LV T A++L+L + +++ K SI AD VE+L A Sbjct: 64 LTEGDLSRLRSNLVKESTLVLFAQQLNLGAQLKLGEGELKSGGHKRPSILADAVEALFGA 123 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +++DGG A V + + +DAKT LQE+ + + P Y V G Sbjct: 124 IFIDGGYVAAEAAVLNLFVPYLAKVDMKTLGKDAKTLLQEYLQGRRQLLPVYSVVDTLGV 183 Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREG 224 H+ F V I L + G S+R AEQ AA + G Sbjct: 184 AHEQLFQVECTIPSLKISTRGAGTSRRNAEQQAALAAYQLIG 225 >gi|70726682|ref|YP_253596.1| ribonuclease III [Staphylococcus haemolyticus JCSC1435] gi|90101647|sp|Q4L5T5|RNC_STAHJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|68447406|dbj|BAE04990.1| ribonuclease III [Staphylococcus haemolyticus JCSC1435] Length = 245 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 5/216 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ ++N L ++A +HSS + + ERLEFLGD +L L +S LF+ E Sbjct: 24 LGFTYSNIDLYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLFDKHPDLPE 83 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ ++V + A +++L I + K S+ +D E+ + ALYL Sbjct: 84 GNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKTGGRTRPSLVSDAFEAFVGALYL 143 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 D G++V F +K D KT+ QE+ H++ Y++ GP H Sbjct: 144 DQGLDVVWQFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNRGDVTYRLIKEEGPAHHR 203 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 FT V + A A G +K+ +EQ AA + Sbjct: 204 LFTSEVILENEAVATGQGKTKKESEQKAAESAYSKL 239 >gi|254499135|ref|ZP_05111825.1| ribonuclease III [Legionella drancourtii LLAP12] gi|254351674|gb|EET10519.1| ribonuclease III [Legionella drancourtii LLAP12] Length = 228 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 117/224 (52%), Gaps = 6/224 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + L +RI Y F + L++ALTH S+ E+YER EFLGD IL +I+ LF+ Sbjct: 2 KIDLERLCRRIDYHFEKPAFLKQALTHCSVG---SENYERFEFLGDSILSFVIANELFHR 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F S EG LS + LV + ++ARELDL F+ + K SI +D +E++ Sbjct: 59 FPSQSEGHLSRLRSFLVRGDMLVEIARELDLGDFLFLGQGELKSGGFRRASILSDALEAV 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 AA++ DGG++ A + K ++ R +D+KT LQE+ A+ PEY + Sbjct: 119 FAAVFFDGGVDAAKEVILKLYRSRLEDPNLNDCLKDSKTRLQEYLQAEKIALPEYALIKV 178 Query: 181 SGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G +H+ F + + QG ++R AEQ+AA +L++ Sbjct: 179 EGDEHEQLFYITCTVEAEKLVTQGEGSNRRKAEQLAAKAMLEQL 222 >gi|299135102|ref|ZP_07028293.1| ribonuclease III [Afipia sp. 1NLS2] gi|298590079|gb|EFI50283.1| ribonuclease III [Afipia sp. 1NLS2] Length = 282 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 88/202 (43%), Positives = 120/202 (59%), Gaps = 3/202 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E+RIG+ F N +LL+ ALTH S S S +SY+RLEFLGD +LGL++S +L+ F Sbjct: 56 EIEQRIGHTFKNPALLKTALTHVSALKSSQSRTDSYQRLEFLGDHVLGLIVSDMLYGAFP 115 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EGE+S R LV E C VA+ L L I++ + SI D+ E++I Sbjct: 116 KADEGEMSKRLADLVRKEACVDVAKSLGLHENIKLGTVGAGVGARLRNSIVGDICEAVIG 175 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A++LDGG A FV + W +R + + RD KT LQEWA K TP Y+ R+GP Sbjct: 176 AIFLDGGYGAAEQFVLRNWTERMRRPVRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPH 235 Query: 185 HDPRFTVVVEISGLAPAQGMDC 206 HDPRF V V++ GLA A+G+ Sbjct: 236 HDPRFRVAVDLPGLASAEGIGS 257 >gi|242373525|ref|ZP_04819099.1| ribonuclease III [Staphylococcus epidermidis M23864:W1] gi|242348888|gb|EES40490.1| ribonuclease III [Staphylococcus epidermidis M23864:W1] Length = 248 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 5/213 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 G++F N L ++A +HSS + + + ERLEFLGD +L L +S LF+ EG Sbjct: 25 GFSFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPHLPEG 84 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 L+ ++V + A ++DL I + K S+ +D E+ + ALYLD Sbjct: 85 NLTKMRATIVCEPSLVIFANKIDLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLD 144 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G+E F +K + D KT+ QE+ H + Y++ GP H Sbjct: 145 QGLETVWAFAEKVIFPYVEDNELVGVVDFKTQFQEFVHRQNKGDVTYRLIKEEGPAHHRL 204 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 FT V + A A+G +K+ +EQ AA + K Sbjct: 205 FTSEVILENKAVAEGKGKTKKESEQKAAEQAYK 237 >gi|332296458|ref|YP_004438381.1| Ribonuclease 3 [Thermodesulfobium narugense DSM 14796] gi|332179561|gb|AEE15250.1| Ribonuclease 3 [Thermodesulfobium narugense DSM 14796] Length = 228 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 9/222 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLL 59 + + S LE+ +GY F N+ L +LTHSS S+++ E +ERLEFLGD +L L++S L Sbjct: 3 TRINLSKLEEDLGYVFTNKKWLMTSLTHSSYSYNHPEVKDFERLEFLGDAVLKLVVSHKL 62 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F + EG++S LVS + +++A++L+L +++ + S R + SI + Sbjct: 63 FVLYPEMSEGDMSKLRAYLVSDKHLTKIAKKLNLQNYLLIGSSER----TIKDSILSASF 118 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+++ A+Y+D ++ +DK +K ++ D+KT LQE + FGV PEYKV Sbjct: 119 EAILGAVYMDSSLKQCYKIIDKLM---NIKIEEYEEDSKTVLQELTQSLFGVLPEYKVID 175 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H P F V + I SK+ A+ AA + L Sbjct: 176 VRGPSHSPIFEVQLSIDNKFFYTATGSSKKQAQSEAAKKALN 217 >gi|258452531|ref|ZP_05700537.1| ribonuclease III [Staphylococcus aureus A5948] gi|257859749|gb|EEV82591.1| ribonuclease III [Staphylococcus aureus A5948] Length = 243 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 R+ T +G+ + N L ++A +HSS + + + ERLEFLGD +L L +S LF Sbjct: 16 RFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG L+ ++V + A ++ L I + K S+ +D E Sbjct: 76 DKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G+++ F +K ++ D KT+ QE+ H + Y + Sbjct: 136 AFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNLIK 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H FT V + G A A+G +K+ +EQ AA K+ Sbjct: 196 EEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQL 239 >gi|256544903|ref|ZP_05472274.1| ribonuclease III [Anaerococcus vaginalis ATCC 51170] gi|256399402|gb|EEU13008.1| ribonuclease III [Anaerococcus vaginalis ATCC 51170] Length = 238 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 7/227 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 LE+ IGY F N++L++ ALTHSS + ++ S ERLEFLGD IL L++S L Sbjct: 9 EEIEKLEESIGYTFKNKNLIDVALTHSSYINESKDENKSSNERLEFLGDSILDLIVSEEL 68 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EG+L+ + +V + S+ + + +L+S++ S++AD Sbjct: 69 YKNHKTYPEGKLTKIRSRIVCTSSFSKASEKFNLSSYLLFGKGEESHNGREKKSVKADTF 128 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E+ AA+YLD G + F+ K + + L++ D KT+LQE+ + + +YK Sbjct: 129 EAFCAAIYLDAGYDFLKDFLMKNYYEIVKELLENDLLFIDYKTKLQEYFNKTNRIILKYK 188 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GP+H+ F + V + G +K+ AEQ+AA K+ Sbjct: 189 LVKEEGPEHNKTFYMEVSAKNKKLSTGKGKNKKEAEQMAARIAYKKL 235 >gi|15643859|ref|NP_228908.1| ribonuclease III [Thermotoga maritima MSB8] gi|7531194|sp|Q9X0I6|RNC_THEMA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|4981647|gb|AAD36178.1|AE001769_8 ribonuclease III [Thermotoga maritima MSB8] Length = 240 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 11/228 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58 +K G F N LL +AL HSS ++ ES E+LEFLGD +L L + + Sbjct: 9 VEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEI 68 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + A+ G+L+ ++ S E + V+R+++L F+ + K SI AD Sbjct: 69 LYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADA 128 Query: 119 VESLIAALYLDGGIEVAGTFVDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 E+L+AA+YLD G E ++ ++ ++ +K G+ D KT LQE ++ V PEY Sbjct: 129 FEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMK-GEMLFDYKTALQEIVQSEHKVPPEY 187 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + D D F V V ++G A G +K+ AE+ AA ++ Sbjct: 188 ILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL 235 >gi|154173754|ref|YP_001409228.1| ribonuclease III [Campylobacter curvus 525.92] gi|189043298|sp|A7H186|RNC_CAMC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|112803490|gb|EAU00834.1| ribonuclease III [Campylobacter curvus 525.92] Length = 223 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 113/221 (51%), Gaps = 4/221 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L+K +GY F N LL +ALTH S S ERLEFLGD ++ L++ LF F Sbjct: 3 DLENLQKLLGYEFENTKLLNEALTHKST--KLPYSNERLEFLGDAVMDLIVGEYLFKKFS 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG++S +LV+ ++ + +AR L + FI +S+ + S+ +D E+++ Sbjct: 61 KTNEGDMSKLRAALVNEKSFANMARHLQIGEFIHLSTAEANNGGREKASLLSDAFEAVMG 120 Query: 125 ALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL+ G++ + + + +D KT LQE A G TP Y++ G Sbjct: 121 AVYLEAGLDKVREIAVRLLEICYPKIDFSHLVKDYKTALQEITQASLGTTPIYELVRSFG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH F + + ++ ++ + SK+ A+Q+AA L++ Sbjct: 181 PDHKKEFEIALLLNDKEISRAIANSKKEAQQMAAKIALEKM 221 >gi|281413069|ref|YP_003347148.1| ribonuclease III [Thermotoga naphthophila RKU-10] gi|281374172|gb|ADA67734.1| ribonuclease III [Thermotoga naphthophila RKU-10] Length = 240 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 112/227 (49%), Gaps = 9/227 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58 +K+ G F N LL +AL HSS ++ ES E+LEFLGD +L L + + Sbjct: 9 VEEFQKKTGINFKNEELLFRALCHSSYANEQNQAGRKNVESNEKLEFLGDAVLELFVCEI 68 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + A+ G+L+ ++ S E + V+R+++L F+ + K SI AD Sbjct: 69 LYKKYPEAEVGDLARAKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADA 128 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E+L+AA+YLD G E ++ ++ + G+ D KT LQE ++ V PEY Sbjct: 129 FEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMRGEMLFDYKTALQEIVQSEHKVPPEYV 188 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + D D F V V + G + A G +K+ AE+ AA ++ Sbjct: 189 LVRTEKNDGDRIFVVEVRVDGKSIAMGRGRTKKEAEKEAARIAYEKL 235 >gi|312864846|ref|ZP_07725077.1| ribonuclease III [Streptococcus downei F0415] gi|311099973|gb|EFQ58186.1| ribonuclease III [Streptococcus downei F0415] Length = 228 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 72/214 (33%), Positives = 107/214 (50%), Gaps = 6/214 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M AL L+ G F ++SLL+ A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MQALE-EKLKADFGIVFKDKSLLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F EG+LS + +V E+ + +++ +FI++ K +I Sbjct: 60 RYLFEKFPKRPEGDLSKMRSMIVREESLAGFSKDCGFEAFIKLGKGEEKTGGRERETILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD GIEV F+++ + + +D KT LQE K V Y Sbjct: 120 DLFEAFLGALDLDQGIEVVEKFLNQVMIPKVEVGDYEQVKDYKTALQEKLQVKGSVQINY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 +V +GP HD F VVV G + G SK+ Sbjct: 180 RVISETGPAHDKHFEVVVSADGKDLSGGQGKSKK 213 >gi|325981700|ref|YP_004294102.1| ribonuclease III [Nitrosomonas sp. AL212] gi|325531219|gb|ADZ25940.1| ribonuclease III [Nitrosomonas sp. AL212] Length = 237 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 74/217 (34%), Positives = 105/217 (48%), Gaps = 6/217 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +R+GY F LL+ ALTH S S + ERLEFLGD IL +IS +++ HF E Sbjct: 17 FCERLGYCFTQSHLLQTALTHRSHSLPH---NERLEFLGDAILNCVISGIIYKHFPELPE 73 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS + V+ + S +A L + +R+ K SI AD E+L+ A+YL Sbjct: 74 GHLSRLRANFVNQKALSSIALNLQMDKLLRLGEGELKSGGCHRPSILADTFEALLGAIYL 133 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D T V + + + +D KT LQE+ ++ PEY V SG H Sbjct: 134 DSDYAQVETVVMAIYLPLIQNIDLESPAKDPKTLLQEFLQSQKLSLPEYLVVTTSGKAHK 193 Query: 187 PRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKR 222 +F V IS L G ++R+AEQVAA ++ Sbjct: 194 QKFKVECVISTLNIRTAGEGTNRRSAEQVAAKLAYEK 230 >gi|88606764|ref|YP_505691.1| ribonuclease III [Anaplasma phagocytophilum HZ] gi|123494405|sp|Q2GIW0|RNC_ANAPZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|88597827|gb|ABD43297.1| ribonuclease III [Anaplasma phagocytophilum HZ] Length = 236 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 77/213 (36%), Positives = 117/213 (54%), Gaps = 2/213 (0%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 K GY F + LL+ A+TH SI+ SYERLEFLGD +LGL++S +L+ F EG Sbjct: 18 KISGYRFQDHELLKTAVTHPSIAAERYASYERLEFLGDAVLGLVVSEMLYTLFPDDSEGL 77 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ + +LV ++A+ L+L + + +S S + +E+LI A+Y+DG Sbjct: 78 LTKKRIALVRGSKVVEIAQSLNLGNILLMSKGELTSGGISNNSNLENALEALIGAIYVDG 137 Query: 131 GIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 G+E F+ ++WK A + +DAKT LQEWA P Y++ +SG +H P F Sbjct: 138 GLESVRHFILQHWKPLATNLADTPLQDAKTALQEWAQGHNFAIPSYRLINKSGLEHAPVF 197 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 TV V ++G C K+ AE AA +L++ Sbjct: 198 TVEVTVNGQRV-HATGCKKKYAEIAAAKLMLEK 229 >gi|42782941|ref|NP_980188.1| ribonuclease III [Bacillus cereus ATCC 10987] gi|47570283|ref|ZP_00240932.1| ribonuclease III [Bacillus cereus G9241] gi|206978506|ref|ZP_03239364.1| ribonuclease III [Bacillus cereus H3081.97] gi|217961269|ref|YP_002339837.1| ribonuclease III [Bacillus cereus AH187] gi|222097294|ref|YP_002531351.1| ribonuclease iii [Bacillus cereus Q1] gi|228986992|ref|ZP_04147118.1| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157425|ref|ZP_04285503.1| Ribonuclease 3 [Bacillus cereus ATCC 4342] gi|229197960|ref|ZP_04324674.1| Ribonuclease 3 [Bacillus cereus m1293] gi|81409451|sp|Q732M1|RNC_BACC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735369|sp|B7HLI2|RNC_BACC7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807238|sp|B9IVD8|RNC_BACCQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|42738868|gb|AAS42796.1| ribonuclease III [Bacillus cereus ATCC 10987] gi|47553047|gb|EAL11449.1| ribonuclease III [Bacillus cereus G9241] gi|206743285|gb|EDZ54734.1| ribonuclease III [Bacillus cereus H3081.97] gi|217063842|gb|ACJ78092.1| ribonuclease III [Bacillus cereus AH187] gi|221241352|gb|ACM14062.1| ribonuclease III [Bacillus cereus Q1] gi|228585439|gb|EEK43543.1| Ribonuclease 3 [Bacillus cereus m1293] gi|228626152|gb|EEK82901.1| Ribonuclease 3 [Bacillus cereus ATCC 4342] gi|228772770|gb|EEM21210.1| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|324327746|gb|ADY23006.1| ribonuclease III [Bacillus thuringiensis serovar finitimus YBT-020] Length = 245 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|75762036|ref|ZP_00741948.1| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490482|gb|EAO53786.1| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 262 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 36 FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 95 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 96 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 155 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 156 FIGALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQE 215 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 216 KGPAHNREFVSRVTLNNVALGLGSGKSKK 244 >gi|74318104|ref|YP_315844.1| ribonuclease III [Thiobacillus denitrificans ATCC 25259] gi|90101653|sp|Q3SH50|RNC_THIDA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|74057599|gb|AAZ98039.1| ribonuclease III [Thiobacillus denitrificans ATCC 25259] Length = 226 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 6/209 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 +AL + L++ +GY F+ LL++ALTH S + ERLEFLGD +L ++ L++ Sbjct: 3 NALLDARLQQALGYTFSRSGLLQQALTHRSYG---ALNNERLEFLGDSVLNCSVARALYD 59 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG LS +LV ET +++A L L +R+ K SI AD +ES Sbjct: 60 AFPDLPEGSLSRLRANLVRQETLAEIAGALRLGDSLRLGEGELKSGGFRRPSILADALES 119 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L A++LD G + A V + + + +D KT LQE ++ PEY++ Sbjct: 120 LFGAVFLDAGFDEAQRVVRRLFDPLVAQIDPKASGKDPKTRLQEILQSRRLPLPEYRLVG 179 Query: 180 RSGPDHDPRFTVVVEISG-LAPAQGMDCS 207 G HD F V ++ + +G S Sbjct: 180 TEGEAHDQSFIVECLLAKPVLSTRGTGKS 208 >gi|312869965|ref|ZP_07730104.1| ribonuclease III [Lactobacillus oris PB013-T2-3] gi|311094550|gb|EFQ52855.1| ribonuclease III [Lactobacillus oris PB013-T2-3] Length = 232 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 7/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L K F++ LL +A T +S + + + YER+EFLGD +L L++S Sbjct: 1 MIEELQDYLAKEFDIHFSDPRLLAEAFTQASYVNEHPHQNLKFYERIEFLGDAVLELIVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ + +G+L+ ++V ++ S+ A+E +IR+ + Sbjct: 61 EYIYKRYPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEELAGARQRPGLLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ ES + ALYLD G FV + + L G F DAKT LQE+ V E Sbjct: 121 DIFESFVGALYLDQGRPAVEKFVRRVIFPK-LDMGWFDHAVDAKTSLQEFLQRDGDVLIE 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y + SG +++P F V V +G A G SK+ AE AA LK+ Sbjct: 180 YHLLEESGTENNPAFHVDVAANGQVIADGQGSSKKQAEMQAAQRALKKL 228 >gi|217967335|ref|YP_002352841.1| Ribonuclease III [Dictyoglomus turgidum DSM 6724] gi|217336434|gb|ACK42227.1| Ribonuclease III [Dictyoglomus turgidum DSM 6724] Length = 238 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 5/220 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNH 62 ++++ +F ++ LL +ALTH S H ++ +RLEFLGD +L ++I+ +LF Sbjct: 15 VERVKEKTRVSFNDKDLLIEALTHPSFKHENPNFKQDNQRLEFLGDAVLNMIITEILFQR 74 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + A EG L+ + LV ET + A+ LDL I + K SI +D+ E+ Sbjct: 75 YREASEGFLTQKRIYLVKEETLYKKAKSLDLGELILLGVGEEKQGGRDKISILSDLFEAF 134 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I ALYLD G E FV++ +K+ ++S + D K LQ + + P+Y V+ G Sbjct: 135 IGALYLDKGYEYTKNFVEEIFKEE-IESIEMEVDWKNLLQTYLQKEGKK-PQYIVSREVG 192 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P+HD F V + I ++G +KR AE AA + L++ Sbjct: 193 PEHDKTFYVELWIDDEKISEGEGKNKREAEIKAAQKALEK 232 >gi|315453268|ref|YP_004073538.1| ribonuclease III [Helicobacter felis ATCC 49179] gi|315132320|emb|CBY82948.1| ribonuclease III [Helicobacter felis ATCC 49179] Length = 225 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 112/220 (50%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L++R+ Y F + +LL++ALTH S + + ERLEFLGD +L L+++ +L+ F Sbjct: 2 LEKLQERLAYHFQDMNLLQQALTHKSTKTPH--NNERLEFLGDAVLDLVVAEILYARFAD 59 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG+LS SLV+ + ++A L L I +S + SI A+ E+L+ A Sbjct: 60 LQEGDLSKMRASLVNEKAFFKLASFLQLQDCILISPAEANNHGHTKPSILANAFEALMGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+E T + ++ L D K+ LQE A+F V P Y + SGP Sbjct: 120 IYLESGLEPIKTLMTRFLDHVYPDLSLQSTFMDYKSALQELTQARFKVVPTYTLKSESGP 179 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH +F + + I SK+ A+Q+ A ++ Sbjct: 180 DHAKQFEMQIFILDKLYGTCTAKSKKEAQQLCAQMAYQQL 219 >gi|228940937|ref|ZP_04103496.1| Ribonuclease 3 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228966797|ref|ZP_04127841.1| Ribonuclease 3 [Bacillus thuringiensis serovar sotto str. T04001] gi|228792896|gb|EEM40454.1| Ribonuclease 3 [Bacillus thuringiensis serovar sotto str. T04001] gi|228818773|gb|EEM64839.1| Ribonuclease 3 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 225 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 5/206 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF + Sbjct: 2 FQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYP 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGEL+ ++V + + A EL S + + ++ ADV E+ I Sbjct: 62 TMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIG 121 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ALYLD G+E F+ + + + D K++LQE EY++ GP Sbjct: 122 ALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQEKGP 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 H+ F V ++ +A G SK+ Sbjct: 182 AHNREFVSRVTLNNVALGLGSGKSKK 207 >gi|56478590|ref|YP_160179.1| ribonuclease III [Aromatoleum aromaticum EbN1] gi|81598583|sp|Q5P086|RNC_AZOSE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56314633|emb|CAI09278.1| ribonuclease III [Aromatoleum aromaticum EbN1] Length = 225 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 73/208 (35%), Positives = 106/208 (50%), Gaps = 6/208 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L++ +G+ F N +LLE+ALTH S Q + ERLEFLGD IL +++ LF F Sbjct: 4 KLDRLQRSLGHRFDNPALLEQALTHRSFG---QPNNERLEFLGDSILNCVVAIALFERFA 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S +EGE+S SLV + +VA ELDL ++R+ K SI AD +E++ A Sbjct: 61 SLREGEMSRLRASLVCQDGLHRVALELDLGEYLRLGEGEMKSGGFRRPSILADALEAVFA 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +LD G A +D+ + A+ G +D KT LQE + P Y + G Sbjct: 121 ATFLDQGFAAAKAVIDRLYDPMIAAIDPGVAAKDPKTALQELLQGRKLPLPTYVMAKVHG 180 Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKR 209 H F VV E++ L G ++R Sbjct: 181 EAHAQEFEVVCEVNALNLRTTGRGTNRR 208 >gi|314933411|ref|ZP_07840776.1| ribonuclease III [Staphylococcus caprae C87] gi|313653561|gb|EFS17318.1| ribonuclease III [Staphylococcus caprae C87] Length = 245 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 63/213 (29%), Positives = 99/213 (46%), Gaps = 5/213 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 G++F N L ++A +HSS + + + ERLEFLGD +L L +S LF+ EG Sbjct: 25 GFSFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPHLPEG 84 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 L+ ++V + A ++DL I + K S+ +D E+ + ALYLD Sbjct: 85 NLTKMRATIVCEPSLVIFANKIDLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLD 144 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G++ F +K D KT+ QE+ H + Y++ GP H Sbjct: 145 QGLDTVWKFAEKVIFPYVEDDELVGVVDFKTQFQEYVHRQNKGDVTYRLIKEEGPAHHRL 204 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 FT V + A A+G +K+ +EQ AA + K Sbjct: 205 FTSEVILENNAVAEGKGKTKKESEQKAAEQAYK 237 >gi|229098318|ref|ZP_04229265.1| Ribonuclease 3 [Bacillus cereus Rock3-29] gi|229104411|ref|ZP_04235080.1| Ribonuclease 3 [Bacillus cereus Rock3-28] gi|229117335|ref|ZP_04246713.1| Ribonuclease 3 [Bacillus cereus Rock1-3] gi|228666235|gb|EEL21699.1| Ribonuclease 3 [Bacillus cereus Rock1-3] gi|228679109|gb|EEL33317.1| Ribonuclease 3 [Bacillus cereus Rock3-28] gi|228685216|gb|EEL39147.1| Ribonuclease 3 [Bacillus cereus Rock3-29] Length = 245 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEKIGITFTDEKLLTQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|283781424|ref|YP_003372179.1| ribonuclease III [Pirellula staleyi DSM 6068] gi|283439877|gb|ADB18319.1| ribonuclease III [Pirellula staleyi DSM 6068] Length = 273 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 77/217 (35%), Positives = 116/217 (53%), Gaps = 3/217 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + E+R+GY F ++ LL ALTH+S + S ERLEFLGD ILG+ + +L+ F Sbjct: 45 LARCERRLGYVFNSKPLLRSALTHASGAEHRLASNERLEFLGDAILGVYVCEMLYRQFPD 104 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ + +VS +TC++V+ L L F+ + + S+ ADV ESLIAA Sbjct: 105 YLEGDLTKVKSVVVSRQTCAKVSEALGLQEFLILGKG-MSSSPNVPPSLLADVFESLIAA 163 Query: 126 LYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGG + A F++ Y +G+ + K+ LQ++A + G TP Y + GP Sbjct: 164 IYLDGGEQAARQFINNYIGPEVELAAAGELGGNYKSLLQQFAQRECGNTPTYHLLDEKGP 223 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 DH F + + G +K+ AEQ AA L Sbjct: 224 DHSKCFKISASVGGKKYQAAWGRNKKEAEQRAANNAL 260 >gi|254524282|ref|ZP_05136337.1| ribonuclease III [Stenotrophomonas sp. SKA14] gi|219721873|gb|EED40398.1| ribonuclease III [Stenotrophomonas sp. SKA14] Length = 226 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 73/217 (33%), Positives = 111/217 (51%), Gaps = 7/217 (3%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 IG+ F + +LL++ALTH S + ERLEFLGD I+ ++ + L+ + A EG Sbjct: 10 DLIGHPFRDAALLKQALTHRSAGAPH---NERLEFLGDSIVNMMAAEALYRRWPKADEGA 66 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 ++ LV + + R L+L + + K SI AD VE+++AA+YLD Sbjct: 67 MTRARAELVREGALAVIGRSLELGERLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDA 126 Query: 131 GIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G E V ++ + SG+ +D KT LQEW A+ P+Y++ SG DH Sbjct: 127 GFEACRAVVLPWFSASIEALPASGRPEKDPKTRLQEWLQARQKALPQYELVSESGDDHAK 186 Query: 188 RFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V ++ A +G S+R AEQ AAA VL++ Sbjct: 187 HFRVRCNVADPAASTEGEGASRRLAEQQAAAAVLEQL 223 >gi|94263438|ref|ZP_01287251.1| Ribonuclease III [delta proteobacterium MLMS-1] gi|93456168|gb|EAT06307.1| Ribonuclease III [delta proteobacterium MLMS-1] Length = 233 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 76/200 (38%), Positives = 102/200 (51%), Gaps = 4/200 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 GY F SLLE AL HSS + + S ERLEFLGD +LGL ++ LL+ + EG+ Sbjct: 16 GYRFKRTSLLELALVHSSRAAEAGKGVSSNERLEFLGDAVLGLAVAALLYEAHPTMPEGD 75 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 LS +LV+ E + +AR+L L FIR+ SI A E+L+ A+YLDG Sbjct: 76 LSRHRAALVNEEHLAGMARQLALGEFIRLGRGEEATGGRDKPSILAATFEALVGAVYLDG 135 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 G E A + + R D+K+ LQE + G P Y + GPDHD RF Sbjct: 136 GYEPALALLRPLFAPWVANPPLPRISDSKSALQEVLQQRHGEGPVYYLENEEGPDHDKRF 195 Query: 190 TVVVEISGLAPAQGMDCSKR 209 TV VE+ G +G K+ Sbjct: 196 TVRVELQGKVLGRGRGRGKK 215 >gi|157825292|ref|YP_001493012.1| ribonuclease III [Rickettsia akari str. Hartford] gi|189043339|sp|A8GM79|RNC_RICAH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157799250|gb|ABV74504.1| ribonuclease III [Rickettsia akari str. Hartford] Length = 227 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + TLEK +GY+F N+ LL +AL+H S+ ++ + YERLEFLGD +L L+++ +LF Sbjct: 3 SFETLEKLLGYSFKNQELLIEALSHPSLRQHHEYKYDKDYERLEFLGDAVLNLVVTEILF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +F S EG L+ + LV ET V +L L +I ++ + + +E Sbjct: 63 RNFASYNEGNLAKIRSYLVCKETICVVGTKLTLKDYIIMTYGEEVAGGRDNPNNIENAME 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIAA+YLD IE + K W++ D KT LQEWA A P Y++ R Sbjct: 123 ALIAAIYLDSNIETTRNIIGKLWEEFIKIQNLTDYDPKTALQEWAQASSHHLPIYRLIKR 182 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H FTV+V++ G S + AE+ AA ++L R Sbjct: 183 EGAAHSSTFTVLVKVKDYEQ-TGTGHSIKEAEKNAARDLLHRL 224 >gi|322834127|ref|YP_004214154.1| ribonuclease III [Rahnella sp. Y9602] gi|321169328|gb|ADW75027.1| ribonuclease III [Rahnella sp. Y9602] Length = 226 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEKLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNQPVVGTGSSRRK 210 >gi|300869947|ref|YP_003784818.1| ribonuclease III [Brachyspira pilosicoli 95/1000] gi|300687646|gb|ADK30317.1| ribonuclease III [Brachyspira pilosicoli 95/1000] Length = 229 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 69/216 (31%), Positives = 115/216 (53%), Gaps = 5/216 (2%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 EK + Y+F N++ L +A+TH + ++ + +RLEFLGD +L L+IS ++ +++ K Sbjct: 10 EKVLQYSFKNKNYLLEAITHRTFANENGNMKYNQRLEFLGDSVLSLIISEHIYKEYNNVK 69 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS LVS T + ++R+L L F+ + ++ D+ E++I A+Y Sbjct: 70 EGKLSKIKAYLVSQNTLANISRKLKLGDFLLLGKGEEASGGRERDNMLEDLFEAIIGAIY 129 Query: 128 LDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD +E FV + +K L F +D KT LQE K+ +TP YK ++ + Sbjct: 130 LDSNLENTKNFVMRVYKDILNKLDINNFDKDYKTILQEIVQKKYKITPTYK-SYEYNEND 188 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + F V V + A G+ SK+ AE AA + L+ Sbjct: 189 NIMFKVEVYVKTKKYASGIGKSKKEAEINAAKKALE 224 >gi|296127821|ref|YP_003635073.1| ribonuclease III [Brachyspira murdochii DSM 12563] gi|296019637|gb|ADG72874.1| ribonuclease III [Brachyspira murdochii DSM 12563] Length = 246 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 9/231 (3%) Query: 1 MSALRYSTL----EKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGL 53 M+ + + ++ I Y F N+S L +A+TH + ++ ++ +RLEFLGD +L L Sbjct: 1 MNIINIEEILNNCQEVIKYEFRNKSYLLEAITHRTYANESKKKMKYNQRLEFLGDSVLSL 60 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +IS LF ++++KEG LS +SLVS ++ + +++EL L FI + + + Sbjct: 61 IISDYLFKKYNTSKEGLLSKVKSSLVSQKSLADISKELKLGDFILLGHGEEVSGGRYRDN 120 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGV 171 + D+ E+++ A+YLD GI A FV K +K R L F +D KT QE K Sbjct: 121 MLEDLFEAIVGAIYLDSGINNAAQFVMKAYKNRLNNLDIENFDKDYKTIFQELIQKKHKT 180 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +P YK ++ F V ++ + G+ SK+ AE AA + L+ Sbjct: 181 SPVYKSYEYHDENNHEMFKSEVYVNDKNFSSGIGKSKKEAETEAAKKALEN 231 >gi|30021937|ref|NP_833568.1| ribonuclease III [Bacillus cereus ATCC 14579] gi|206971258|ref|ZP_03232209.1| ribonuclease III [Bacillus cereus AH1134] gi|218232410|ref|YP_002368650.1| ribonuclease III [Bacillus cereus B4264] gi|218899002|ref|YP_002447413.1| ribonuclease III [Bacillus cereus G9842] gi|228902352|ref|ZP_04066509.1| Ribonuclease 3 [Bacillus thuringiensis IBL 4222] gi|228909674|ref|ZP_04073497.1| Ribonuclease 3 [Bacillus thuringiensis IBL 200] gi|228922603|ref|ZP_04085903.1| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954126|ref|ZP_04116154.1| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960065|ref|ZP_04121729.1| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228973866|ref|ZP_04134442.1| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980456|ref|ZP_04140766.1| Ribonuclease 3 [Bacillus thuringiensis Bt407] gi|229047536|ref|ZP_04193126.1| Ribonuclease 3 [Bacillus cereus AH676] gi|229071347|ref|ZP_04204570.1| Ribonuclease 3 [Bacillus cereus F65185] gi|229081104|ref|ZP_04213614.1| Ribonuclease 3 [Bacillus cereus Rock4-2] gi|229111320|ref|ZP_04240873.1| Ribonuclease 3 [Bacillus cereus Rock1-15] gi|229129125|ref|ZP_04258098.1| Ribonuclease 3 [Bacillus cereus BDRD-Cer4] gi|229146420|ref|ZP_04274791.1| Ribonuclease 3 [Bacillus cereus BDRD-ST24] gi|229152048|ref|ZP_04280243.1| Ribonuclease 3 [Bacillus cereus m1550] gi|229180125|ref|ZP_04307469.1| Ribonuclease 3 [Bacillus cereus 172560W] gi|229192018|ref|ZP_04318988.1| Ribonuclease 3 [Bacillus cereus ATCC 10876] gi|296504344|ref|YP_003666044.1| ribonuclease III [Bacillus thuringiensis BMB171] gi|38372411|sp|Q819V8|RNC_BACCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735367|sp|B7IUK8|RNC_BACC2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735368|sp|B7HDX2|RNC_BACC4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|29897493|gb|AAP10769.1| Ribonuclease III [Bacillus cereus ATCC 14579] gi|206734030|gb|EDZ51201.1| ribonuclease III [Bacillus cereus AH1134] gi|218160367|gb|ACK60359.1| ribonuclease III [Bacillus cereus B4264] gi|218544165|gb|ACK96559.1| ribonuclease III [Bacillus cereus G9842] gi|228591569|gb|EEK49418.1| Ribonuclease 3 [Bacillus cereus ATCC 10876] gi|228603334|gb|EEK60811.1| Ribonuclease 3 [Bacillus cereus 172560W] gi|228631397|gb|EEK88031.1| Ribonuclease 3 [Bacillus cereus m1550] gi|228637053|gb|EEK93512.1| Ribonuclease 3 [Bacillus cereus BDRD-ST24] gi|228654362|gb|EEL10227.1| Ribonuclease 3 [Bacillus cereus BDRD-Cer4] gi|228672096|gb|EEL27387.1| Ribonuclease 3 [Bacillus cereus Rock1-15] gi|228702148|gb|EEL54624.1| Ribonuclease 3 [Bacillus cereus Rock4-2] gi|228711801|gb|EEL63753.1| Ribonuclease 3 [Bacillus cereus F65185] gi|228723783|gb|EEL75138.1| Ribonuclease 3 [Bacillus cereus AH676] gi|228779276|gb|EEM27533.1| Ribonuclease 3 [Bacillus thuringiensis Bt407] gi|228785891|gb|EEM33894.1| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799581|gb|EEM46534.1| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805446|gb|EEM52037.1| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228837032|gb|EEM82373.1| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228849963|gb|EEM94794.1| Ribonuclease 3 [Bacillus thuringiensis IBL 200] gi|228857321|gb|EEN01824.1| Ribonuclease 3 [Bacillus thuringiensis IBL 4222] gi|296325396|gb|ADH08324.1| ribonuclease III [Bacillus thuringiensis BMB171] gi|326941618|gb|AEA17514.1| ribonuclease III [Bacillus thuringiensis serovar chinensis CT-43] Length = 245 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|171780118|ref|ZP_02921022.1| hypothetical protein STRINF_01906 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281466|gb|EDT46901.1| hypothetical protein STRINF_01906 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 228 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M AL + L++ G AF +++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MQALD-TKLQRDFGIAFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+LS + +V E+ + +R FI++ + K +I Sbjct: 60 QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL +D G+E F+++ + K + +D KT LQE VT +Y Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERVKDYKTTLQELLQGHSDVTIDY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +V+ SGP H F V V ++ A ++G+ SK+ AEQ AA L Sbjct: 180 RVSSESGPAHAKVFEVTVYVNDEAKSKGIGKSKKLAEQDAAKNAL 224 >gi|52141634|ref|YP_085190.1| ribonuclease III [Bacillus cereus E33L] gi|81686565|sp|Q636H7|RNC_BACCZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|51975103|gb|AAU16653.1| ribonuclease III [Bacillus cereus E33L] Length = 245 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGGLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|295836307|ref|ZP_06823240.1| ribonuclease III [Streptomyces sp. SPB74] gi|295825949|gb|EFG64564.1| ribonuclease III [Streptomyces sp. SPB74] Length = 280 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 120/220 (54%), Gaps = 6/220 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 42 AASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 100 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V+R LDL +FIR+ SI AD + Sbjct: 101 YRAHPDLPEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTL 160 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ AG V + + KS + D KT LQE + PEY V Sbjct: 161 EAVIGAVYLDQGLDKAGELVHRLFDPLIEKSAELGAGLDWKTSLQELTAVEGLGVPEYLV 220 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 T GPDH+ FT + G++ G SK+ AEQ AA Sbjct: 221 T-EEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 259 >gi|315640113|ref|ZP_07895235.1| ribonuclease III [Enterococcus italicus DSM 15952] gi|315484090|gb|EFU74564.1| ribonuclease III [Enterococcus italicus DSM 15952] Length = 233 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 65/214 (30%), Positives = 98/214 (45%), Gaps = 5/214 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M ++L++ F LLE+A THSS + ++ ERLEFLGD +L LL+S Sbjct: 4 MDNQFVTSLKENYQIVFQEIGLLEQAFTHSSYVNEHRNMALSDNERLEFLGDAVLELLVS 63 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ F EG+L+ S+V ++ ++ ARE +IR+ S+ Sbjct: 64 QYLYRKFPEIPEGKLTKLRASMVREDSLAEFARECGFDQYIRLGKGEENSGGRQRNSLLC 123 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 D+ ES + ALYLD +E F+ K + D KT+LQE V +Y Sbjct: 124 DLFESFLGALYLDQELEAVNQFLKKVVFPKVDAGAFSHEMDHKTKLQEVLQRAGDVFIDY 183 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 ++T GP H+ F V G +G SK+ Sbjct: 184 RLTNEEGPAHERVFWTEVYCDGQLIGRGQGKSKK 217 >gi|257460238|ref|ZP_05625341.1| ribonuclease III [Campylobacter gracilis RM3268] gi|257442303|gb|EEV17443.1| ribonuclease III [Campylobacter gracilis RM3268] Length = 303 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 117/219 (53%), Gaps = 7/219 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L++++GY F N++ L+ ALTH S + + + ERLEFLGD ++ L++ LF F Sbjct: 3 NLEKLQEKLGYKFKNQTHLKIALTHKSAKNGH--NNERLEFLGDAVMDLIVGEYLFKKF- 59 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S+ EG+LS +LV+ + S+ A+ L + + +S ++ S+ +D E+++ Sbjct: 60 SSDEGDLSKLRAALVNESSFSKFAKFLGIGENLNMSLSEERNGGREKPSLLSDAFEAIMG 119 Query: 125 ALYLDGGIEVAGTF---VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YL+ G++ + + R + + RD KT LQE AKFGVTPEY + S Sbjct: 120 AVYLESGLQNTARIAIAILEILYPR-ISFNELVRDYKTALQELTQAKFGVTPEYILLGSS 178 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDH F + + G + + SK+ AEQ A + Sbjct: 179 GPDHKKSFEMAALVGGKWLSSAVGASKKEAEQKCAQIAI 217 >gi|148553136|ref|YP_001260718.1| RNAse III [Sphingomonas wittichii RW1] gi|148498326|gb|ABQ66580.1| RNAse III [Sphingomonas wittichii RW1] Length = 234 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 89/211 (42%), Positives = 123/211 (58%), Gaps = 3/211 (1%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +G+ + +L E+ALTH S ++ YERLEFLGDR+LGL+ LF F EG+LS Sbjct: 26 LGHEPRDLALFERALTHGSYGPNH---YERLEFLGDRVLGLVAGAWLFELFPDEPEGKLS 82 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 R N++VS ETC+ V R + +A+ +++ R D ++ DVVE+LI ALYL+GG+ Sbjct: 83 RRLNAIVSRETCADVGRAIGVATHMKLGKQARDDGAVQSDNVLGDVVEALIGALYLEGGL 142 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 + A FV + W RA + + K+ LQEWA A P Y + RSGP H PRFTV Sbjct: 143 DAAQAFVRRAWDDRATGQAQAPKHPKSALQEWAAAHRCKPPVYTMGNRSGPHHAPRFTVT 202 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V I G A A SK+ AE AA +L++ Sbjct: 203 VAIPGRAEASAEGSSKQEAETAAAKALLEKL 233 >gi|65321177|ref|ZP_00394136.1| COG0571: dsRNA-specific ribonuclease [Bacillus anthracis str. A2012] gi|118479071|ref|YP_896222.1| ribonuclease III [Bacillus thuringiensis str. Al Hakam] gi|118418296|gb|ABK86715.1| RNAse III [Bacillus thuringiensis str. Al Hakam] Length = 262 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 36 FKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 95 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 96 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 155 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 156 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 215 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 216 KGPAHNREFVSRVTLNNVALGLGSGKSKK 244 >gi|227504755|ref|ZP_03934804.1| ribonuclease III [Corynebacterium striatum ATCC 6940] gi|227198605|gb|EEI78653.1| ribonuclease III [Corynebacterium striatum ATCC 6940] Length = 256 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 114/224 (50%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A+ ++ L K +G A+ +L ALTH S ++ + ERLEFLGD +LGL +++ L Sbjct: 18 AAVDHAPLLKSLGVELADENL-RLALTHRSFANENGYLPNNERLEFLGDAVLGLSVASKL 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S E ++S S+VS S +ARE++L I + + SI AD Sbjct: 77 YEQYPSRPESDISKMRASIVSRYGLSDIAREIELGQHILLGKGEQSTGGRDKDSILADTT 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++ A+Y G E A + + ++++ + R D KT LQE P Y Sbjct: 137 EAIFGAIYRQYGFETARDVILRLFQKKIDNAVVSGRHMDWKTNLQELCAELKAPMPVYTA 196 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GP+HD FT V ++GL G+ +K+ AEQ AA E + Sbjct: 197 TS-TGPEHDQTFTAVATVAGLTVGNGVGHNKKLAEQQAAQEACQ 239 >gi|269127639|ref|YP_003301009.1| ribonuclease III [Thermomonospora curvata DSM 43183] gi|268312597|gb|ACY98971.1| ribonuclease III [Thermomonospora curvata DSM 43183] Length = 268 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 77/216 (35%), Positives = 112/216 (51%), Gaps = 6/216 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + LE+ +G + + R LLE+ALTH S ++ + ERLEFLGD +LGL+++ LF + Sbjct: 27 AELERALGVSIS-RELLERALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLFRNHP 85 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ ++V+ + VAR L ++IR+ TSI AD +E+LI Sbjct: 86 DLPEGQLAKLRAAVVNMRALAGVARSLGAGAYIRLGRGEEGTGGRDKTSILADTLEALIG 145 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL+ G++ A V + + KS D KT LQE + PEY V SG Sbjct: 146 AVYLEHGLDEAAKLVHRLFDSLIDKSASLGAGLDWKTSLQELTAEEELGVPEYHV-AESG 204 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 PDH F V + G+ G SK+ AEQ AA Sbjct: 205 PDHQKTFRATVRVGGVTYGSGEGRSKKEAEQRAAEA 240 >gi|217977175|ref|YP_002361322.1| Ribonuclease III [Methylocella silvestris BL2] gi|254807894|sp|B8EK13|RNC_METSB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|217502551|gb|ACK49960.1| Ribonuclease III [Methylocella silvestris BL2] Length = 235 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 99/224 (44%), Positives = 135/224 (60%), Gaps = 1/224 (0%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 +A S LE RIG+ F+ L+E ALTH S + + SY+RLEFLGDR+LG++++ +L+ Sbjct: 3 AAPDLSALEARIGHRFSAADLIEAALTHVSAAQGKRVSYQRLEFLGDRVLGVVVANMLYG 62 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A EGELS R LV E+C++VA E + +++RV K S +I DV ES Sbjct: 63 AFPDADEGELSRRLADLVRKESCAEVALEWGVEAYVRVGESE-KQNASVNRAILGDVCES 121 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +I A++LDGG A V + ++ R + RD KT LQEWA A+ P Y+ T R+ Sbjct: 122 IIGAVFLDGGFAPAQRVVTQAFEPRMRSPRRPLRDPKTTLQEWAQARGLPPPSYRETART 181 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDH P FT+ VEI+G A+ +KR AEQ AAA L RE I Sbjct: 182 GPDHAPEFTISVEIAGFQQAEARGFAKRLAEQAAAAAFLTREKI 225 >gi|313888515|ref|ZP_07822182.1| ribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845544|gb|EFR32938.1| ribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b] Length = 231 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 115/228 (50%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ LE+++ Y F ++ LLE ALTHSS + + ES ERLEFLGD +LGL+I Sbjct: 1 MTFSNLKNLERKLNYDFKDKGLLETALTHSSYVNENKMKQYESNERLEFLGDAVLGLVIG 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 + +F EG L+ V+ + +A+ L+L FIR +K+ S S A Sbjct: 61 EYFYKNFPKDLEGSLTKMRAESVNEKVLFFIAKGLELGDFIRFGKGEKKNGGSKRESTSA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPE 174 D +E+LI A++LD A V + + + F D KT LQE + G E Sbjct: 121 DALEALIGAIFLDSNFNNAKKIVLNLFDEFLKEDAYKLFNVDFKTMLQEEVQ-RSGQKAE 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YK+ GPD+D F + + + +G +K+ ++Q AA E L+R Sbjct: 180 YKLVREEGPDNDKTFFTELYLDEVLAGKGSGKTKKESQQEAAREALER 227 >gi|281491298|ref|YP_003353278.1| ribonuclease III [Lactococcus lactis subsp. lactis KF147] gi|281375039|gb|ADA64557.1| Ribonuclease III [Lactococcus lactis subsp. lactis KF147] Length = 231 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 103/223 (46%), Gaps = 9/223 (4%) Query: 8 TLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 L+K++ G F + LL+ THSS ++ + + ERLEFLGD L L+IS L Sbjct: 3 KLQKKLKNDYGLVFNDEDLLKTVFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYL 62 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EGELS +S+V E+ + +R F+R+ K + ++ Sbjct: 63 YRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLF 122 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVT 178 E+ + AL++D G++ F+ + D KTELQE T YK+ Sbjct: 123 EAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVIDYKTELQEVLQIGGETTISYKIL 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP HD F V +G +G+ SK+ AEQ AA +K Sbjct: 183 KEEGPAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225 >gi|312863862|ref|ZP_07724100.1| ribonuclease III [Streptococcus vestibularis F0396] gi|322516541|ref|ZP_08069457.1| ribonuclease III [Streptococcus vestibularis ATCC 49124] gi|311101398|gb|EFQ59603.1| ribonuclease III [Streptococcus vestibularis F0396] gi|322124929|gb|EFX96349.1| ribonuclease III [Streptococcus vestibularis ATCC 49124] Length = 229 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 8/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ L LE+ G F + LLE A TH+S ++ ++ ERLEFLGD L L+IS Sbjct: 1 MNQLE-QKLEQDFGIVFNQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + + EGE+S +++V E+ + ++ +IR+ K +I Sbjct: 60 VYLYKRYPNKPEGEMSKMRSTIVREESLAGFSKACGFEQYIRLGKGEEKSGGRERATILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + ALYLD G+ F+++ + ++ G F R D KT LQE V Sbjct: 120 DLWEAFLGALYLDQGLPAVEKFLNQVMIPQ-VEKGNFDRVTDYKTALQERLQVNGTVDIT 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 Y V SGP H FT+ V + G + G+ S Sbjct: 179 YTVIDESGPAHAKEFTMQVAVDGKELSTGLGKS 211 >gi|238762797|ref|ZP_04623766.1| Ribonuclease 3 [Yersinia kristensenii ATCC 33638] gi|238699102|gb|EEP91850.1| Ribonuclease 3 [Yersinia kristensenii ATCC 33638] Length = 226 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 112/213 (52%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKH---NERLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I G + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIHTVGRLILDWYRSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRK 210 >gi|30263852|ref|NP_846229.1| ribonuclease III [Bacillus anthracis str. Ames] gi|47529278|ref|YP_020627.1| ribonuclease III [Bacillus anthracis str. 'Ames Ancestor'] gi|49186699|ref|YP_029951.1| ribonuclease III [Bacillus anthracis str. Sterne] gi|49478414|ref|YP_037910.1| ribonuclease III [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165873286|ref|ZP_02217894.1| ribonuclease III [Bacillus anthracis str. A0488] gi|167636662|ref|ZP_02394952.1| ribonuclease III [Bacillus anthracis str. A0442] gi|167642023|ref|ZP_02400254.1| ribonuclease III [Bacillus anthracis str. A0193] gi|170689645|ref|ZP_02880826.1| ribonuclease III [Bacillus anthracis str. A0465] gi|177655964|ref|ZP_02937116.1| ribonuclease III [Bacillus anthracis str. A0174] gi|190565836|ref|ZP_03018755.1| ribonuclease III [Bacillus anthracis Tsiankovskii-I] gi|196035867|ref|ZP_03103269.1| ribonuclease III [Bacillus cereus W] gi|196042325|ref|ZP_03109601.1| ribonuclease III [Bacillus cereus NVH0597-99] gi|196047446|ref|ZP_03114658.1| ribonuclease III [Bacillus cereus 03BB108] gi|218904979|ref|YP_002452813.1| ribonuclease III [Bacillus cereus AH820] gi|225865830|ref|YP_002751208.1| ribonuclease III [Bacillus cereus 03BB102] gi|227813243|ref|YP_002813252.1| ribonuclease III [Bacillus anthracis str. CDC 684] gi|228916486|ref|ZP_04080052.1| Ribonuclease 3 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928897|ref|ZP_04091929.1| Ribonuclease 3 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935163|ref|ZP_04097990.1| Ribonuclease 3 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947568|ref|ZP_04109858.1| Ribonuclease 3 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229092891|ref|ZP_04224025.1| Ribonuclease 3 [Bacillus cereus Rock3-42] gi|229123363|ref|ZP_04252567.1| Ribonuclease 3 [Bacillus cereus 95/8201] gi|229186089|ref|ZP_04313258.1| Ribonuclease 3 [Bacillus cereus BGSC 6E1] gi|229599971|ref|YP_002868086.1| ribonuclease III [Bacillus anthracis str. A0248] gi|254683443|ref|ZP_05147303.1| ribonuclease III [Bacillus anthracis str. CNEVA-9066] gi|254721380|ref|ZP_05183169.1| ribonuclease III [Bacillus anthracis str. A1055] gi|254735887|ref|ZP_05193593.1| ribonuclease III [Bacillus anthracis str. Western North America USA6153] gi|254739520|ref|ZP_05197217.1| ribonuclease III [Bacillus anthracis str. Kruger B] gi|254751172|ref|ZP_05203211.1| ribonuclease III [Bacillus anthracis str. Vollum] gi|254756720|ref|ZP_05208749.1| ribonuclease III [Bacillus anthracis str. Australia 94] gi|38372420|sp|Q81WI8|RNC_BACAN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|81395098|sp|Q6HEW6|RNC_BACHK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735366|sp|B7JJT6|RNC_BACC0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807235|sp|C3P5Q0|RNC_BACAA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807236|sp|C3L778|RNC_BACAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807237|sp|C1EP73|RNC_BACC3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|30258496|gb|AAP27715.1| ribonuclease III [Bacillus anthracis str. Ames] gi|47504426|gb|AAT33102.1| ribonuclease III [Bacillus anthracis str. 'Ames Ancestor'] gi|49180626|gb|AAT56002.1| ribonuclease III [Bacillus anthracis str. Sterne] gi|49329970|gb|AAT60616.1| ribonuclease III [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164710971|gb|EDR16540.1| ribonuclease III [Bacillus anthracis str. A0488] gi|167510022|gb|EDR85437.1| ribonuclease III [Bacillus anthracis str. A0193] gi|167527913|gb|EDR90729.1| ribonuclease III [Bacillus anthracis str. A0442] gi|170666390|gb|EDT17172.1| ribonuclease III [Bacillus anthracis str. A0465] gi|172079908|gb|EDT65015.1| ribonuclease III [Bacillus anthracis str. A0174] gi|190562755|gb|EDV16721.1| ribonuclease III [Bacillus anthracis Tsiankovskii-I] gi|195991516|gb|EDX55482.1| ribonuclease III [Bacillus cereus W] gi|196021754|gb|EDX60449.1| ribonuclease III [Bacillus cereus 03BB108] gi|196026847|gb|EDX65478.1| ribonuclease III [Bacillus cereus NVH0597-99] gi|218539426|gb|ACK91824.1| ribonuclease III [Bacillus cereus AH820] gi|225790989|gb|ACO31206.1| ribonuclease III [Bacillus cereus 03BB102] gi|227006213|gb|ACP15956.1| ribonuclease III [Bacillus anthracis str. CDC 684] gi|228597265|gb|EEK54916.1| Ribonuclease 3 [Bacillus cereus BGSC 6E1] gi|228660139|gb|EEL15775.1| Ribonuclease 3 [Bacillus cereus 95/8201] gi|228690513|gb|EEL44296.1| Ribonuclease 3 [Bacillus cereus Rock3-42] gi|228812088|gb|EEM58419.1| Ribonuclease 3 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824528|gb|EEM70333.1| Ribonuclease 3 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830704|gb|EEM76309.1| Ribonuclease 3 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843065|gb|EEM88147.1| Ribonuclease 3 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229264379|gb|ACQ46016.1| ribonuclease III [Bacillus anthracis str. A0248] Length = 245 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|223043742|ref|ZP_03613785.1| ribonuclease III [Staphylococcus capitis SK14] gi|222442839|gb|EEE48941.1| ribonuclease III [Staphylococcus capitis SK14] Length = 245 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 5/213 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 G+ F N L ++A +HSS + + + ERLEFLGD +L L +S LF+ EG Sbjct: 25 GFNFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPHLPEG 84 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 L+ ++V + A ++DL I + K S+ +D E+ + ALYLD Sbjct: 85 NLTKMRATIVCEPSLVIFANKIDLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLD 144 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G++ F +K D KT+ QE+ H + Y++ GP H Sbjct: 145 QGLDTVWKFAEKVIFPYVEDDELVGVVDFKTQFQEYVHRQNKGDVTYRLIKEEGPAHHRL 204 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 FT V + A A+G +K+ +EQ AA + K Sbjct: 205 FTSEVILENNAVAEGKGKTKKESEQKAAEQAYK 237 >gi|315638039|ref|ZP_07893224.1| ribonuclease III [Campylobacter upsaliensis JV21] gi|315481887|gb|EFU72506.1| ribonuclease III [Campylobacter upsaliensis JV21] Length = 224 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 4/222 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE ++ Y F ++ LL ALTH S +Y + ERLEFLGD +L L++ LF+ F Sbjct: 3 KLELLEAKLNYKFKDQKLLIYALTHKSAKKNY--NNERLEFLGDAVLDLVVGEFLFHKFK 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+LS +LV+ ++ +++A L+L +FI +S + + SI +D E+LI Sbjct: 61 NEAEGDLSKLRAALVNEKSFAKIATSLNLGAFIFMSIAEQNNGGKTKPSILSDAFEALIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL+L+ G A + ++ + + +D KT+LQE AK G+TPEY+ G Sbjct: 121 ALHLEAGFIKAKEIALRLIEENFPNIDAKSLFKDYKTKLQEITQAKMGLTPEYETLRAFG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 181 PDHQKSFEIALNLEGKEMARAIASSKKEAQQMAAKLTLEKLG 222 >gi|322373156|ref|ZP_08047692.1| ribonuclease III [Streptococcus sp. C150] gi|321278198|gb|EFX55267.1| ribonuclease III [Streptococcus sp. C150] Length = 229 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 8/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ L LE+ G F+ + LLE A TH+S ++ ++ ERLEFLGD L L+IS Sbjct: 1 MNQLE-QKLEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+N + + EGE+S +++V E+ + + FIR+ K +I Sbjct: 60 VYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQFIRLGKGEEKSGGRERATILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + ALYLD G+ F++K + ++ G F R D KTELQE V Sbjct: 120 DLWEAFLGALYLDQGLPAVEKFLNKVMIPK-VEEGNFDRVTDYKTELQERLQVNGTVDIT 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 Y V SGP H FT+ V + G + G+ S Sbjct: 179 YTVIEESGPAHAKEFTMQVAVDGKELSTGLGKS 211 >gi|238926905|ref|ZP_04658665.1| ribonuclease III [Selenomonas flueggei ATCC 43531] gi|238885139|gb|EEQ48777.1| ribonuclease III [Selenomonas flueggei ATCC 43531] Length = 238 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 117/222 (52%), Gaps = 8/222 (3%) Query: 1 MSALRYSTLEKR---IGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLL 54 M+ R + L + + FA+ SLLE+ALTH S + +E ERLEFLGD +L L Sbjct: 5 MTETRRAELVRLSAFLDVDFADLSLLEEALTHPSYVNEARERATHNERLEFLGDAVLELA 64 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 IST L+ + EGEL+ SLV +ET +++AR L L + +R+ + + Sbjct: 65 ISTYLYVAYPHCSEGELTKMRASLVQSETLARLARRLHLGAHLRMGRGEMLGGGAERQNN 124 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVT 172 +V E++I A+YLD G + A ++V + + + L+ +D KT LQE+ Sbjct: 125 LENVFEAVIGAVYLDRGWDAAYSYVQRQFTEEVTRLRQEHAVQDYKTMLQEYVQGHRHEC 184 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 Y+ SGPDHD RFT+ V I +G+ SK+ AEQ Sbjct: 185 IAYEQVAESGPDHDKRFTMRVRIGMEVLGEGIGRSKKEAEQH 226 >gi|218248059|ref|YP_002373430.1| Ribonuclease III [Cyanothece sp. PCC 8801] gi|257060612|ref|YP_003138500.1| ribonuclease III [Cyanothece sp. PCC 8802] gi|218168537|gb|ACK67274.1| Ribonuclease III [Cyanothece sp. PCC 8801] gi|256590778|gb|ACV01665.1| ribonuclease III [Cyanothece sp. PCC 8802] Length = 225 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 102/219 (46%), Gaps = 11/219 (5%) Query: 16 AFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N+ LL+ ALTH S + + E ERLEFLGD IL ++S L+ + E +L+ Sbjct: 6 QFKNQELLDCALTHRSYINEHFEVTEHNERLEFLGDAILQFVVSEELYRRYPELTEAQLT 65 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + LV +Q AR LDL + + KD ++ +D E++I A +LD GI Sbjct: 66 RLRSKLVDEPQLAQFARTLDLGQLMYLGQGAIKDGGRENPALLSDAFEAIIGAYFLDAGI 125 Query: 133 EVAGTFVDKYWKQRALKS--------GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 E FV +K+ D K LQ+WA ++ PEY + +SGPD Sbjct: 126 EAVQYFVRSLFKEAIDNLVLPESRTVSPSIIDVKNRLQQWALEQYKQVPEYFLIEQSGPD 185 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H F V I+G G K+ A + AA + L + Sbjct: 186 HAKEFVFGVRINGQVLGTGKGRRKQEATKAAAQDALDKL 224 >gi|294102050|ref|YP_003553908.1| ribonuclease III [Aminobacterium colombiense DSM 12261] gi|293617030|gb|ADE57184.1| ribonuclease III [Aminobacterium colombiense DSM 12261] Length = 240 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 ++ ++R+GY F+ + +L++ALTH+S +H ERLEFLGD +L L++S LFN Sbjct: 15 ELASFQERLGYLFSKKEILQEALTHASYAHEKGLHFHNERLEFLGDAVLELIVSANLFNG 74 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG L+ ++LV S + + L IR+ L + S SI AD E++ Sbjct: 75 YPDVDEGTLTRYRSNLVCKNALSVWGKSIGLPQIIRLGKGLEQQGAS--ASIIADTSEAV 132 Query: 123 IAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A++ DGG A V +Y + Q + + D K+ +QE + P Y V Sbjct: 133 LGAVFSDGGFAAAQNVVRRYLFFQSNINAYDKNSDPKSLIQEETQKRGLGQPCYVVISTE 192 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GP H P FTV ++I G G S + AE +AA LK+ G+ Sbjct: 193 GPPHMPIFTVQLKIDGQLYGSGQGHSIKVAETLAAQRALKQVGL 236 >gi|308234556|ref|ZP_07665293.1| ribonuclease III [Atopobium vaginae DSM 15829] gi|328944154|ref|ZP_08241619.1| ribonuclease III [Atopobium vaginae DSM 15829] gi|327492123|gb|EGF23897.1| ribonuclease III [Atopobium vaginae DSM 15829] Length = 233 Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 111/224 (49%), Gaps = 3/224 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNH 62 R E+ I Y F N+ L++ A+TH S SYERLEFLGD ILG +++T +F Sbjct: 6 RIKHAEQIIEYTFENKRLIQAAITHPSAVEGLPVSASYERLEFLGDSILGAIVATDMFEK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ SLVS +T S VA EL + I + TS +V ESL Sbjct: 66 FPGMDEGALTRMKISLVSGKTLSMVAEELGIGECIIFGDSEKGTGVRGFTSALENVYESL 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + ALYL+ G E F+ + + + K K+ LQE +F + P Y++ + Sbjct: 126 VGALYLEAGYEPTVKFIRRTLTPYMVPELAKHPISPKSRLQEVCQKRFHIAPVYELEDET 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GP H P+FT V + G +G SK+ ++ +AA L + + Sbjct: 186 GPAHAPQFTSAVFVDGELMGRGTGSSKKESQSIAALSALDKLDV 229 >gi|303326944|ref|ZP_07357386.1| ribonuclease III [Desulfovibrio sp. 3_1_syn3] gi|302862932|gb|EFL85864.1| ribonuclease III [Desulfovibrio sp. 3_1_syn3] Length = 253 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 110/219 (50%), Gaps = 5/219 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFD 64 LE+++G+ FA LL+ ALTHSS ++ Y Q ER EFLGD +L L +S LF F Sbjct: 18 ALEEKLGHVFARPELLDLALTHSSWANEYSGGQHHNERQEFLGDAVLELCVSWELFRRFP 77 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A+EGEL+ LVS + ++ ARE L S +++ + S+ +DV+E+++A Sbjct: 78 EAREGELTKLRARLVSTVSLAERAREFGLDSLLKLGKGEERQGGRSRDSVLSDVLEAVLA 137 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+Y DGG A V + ++ R+D KT LQE A F P Y G Sbjct: 138 AVYEDGGFTAAQAAVAHIFAPHWPRAAGEPQRKDYKTRLQEVAQQLFRERPVYVQLASHG 197 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P+H F V + + S + AEQ AA + L Sbjct: 198 PEHAKIFEVSLHLPDGREFTASGTSCKKAEQEAARQALN 236 >gi|67459568|ref|YP_247192.1| ribonuclease III [Rickettsia felis URRWXCal2] gi|75536032|sp|Q4UKA8|RNC_RICFE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|67005101|gb|AAY62027.1| Ribonuclease III [Rickettsia felis URRWXCal2] Length = 225 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 114/222 (51%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + LEK +GY+F N+ LL +AL+H S+ ++ + YERLEFLGD +L L+++ +LF Sbjct: 4 FEKLEKLLGYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVVTEILFK 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +F + EG L+ + LV ET V +L L +I ++ + + E+ Sbjct: 64 NFANYNEGNLAKIRSYLVCKETICVVGTKLTLKDYIIMTHGEEVAGGRDNPNNIENATEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 LIAA+YLD IE + K W + D KT LQEWA A P Y++ R Sbjct: 124 LIAAIYLDSNIETTRNIIGKLWAEFIKIQNLTDYDPKTALQEWAQASSHHLPIYRLIKRE 183 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H FTV+V++ G S + AE+ AA ++L + Sbjct: 184 GAAHSSTFTVLVKVKDYKQ-IGTGHSIKEAEKNAARKLLHKL 224 >gi|303233301|ref|ZP_07319972.1| ribonuclease III [Atopobium vaginae PB189-T1-4] gi|302480601|gb|EFL43690.1| ribonuclease III [Atopobium vaginae PB189-T1-4] Length = 229 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 112/224 (50%), Gaps = 3/224 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLF 60 R +++ + Y F++ +L + ALTH S SYERLEFLGD ILG +I+ +F Sbjct: 4 TERVCRVQEILDYTFSDITLAKAALTHPSAVEGQPVSASYERLEFLGDSILGAIIACDMF 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG L+ SLVS +T SQVA EL +A I R M S +V E Sbjct: 64 EQFPDMDEGALTRMKTSLVSGQTLSQVADELGIAPLIVFGESERGTGTRGMHSALENVYE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +L+ A+YLDGG + F+ + + + K+ELQE++ + P Y++ Sbjct: 124 ALVGAMYLDGGYDPTAAFIRRTLAEYMVPQRAAHPISPKSELQEFSQRIYHEMPVYELEE 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H P FT V ++G +G SK+ ++ AA L + Sbjct: 184 ESGPAHLPHFTTAVYVNGELVGRGSGTSKKESQTQAAQAALDKL 227 >gi|298571391|gb|ADI87733.1| RNase III [uncultured Nitrospirae bacterium MY3-5B] Length = 263 Score = 237 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 73/236 (30%), Positives = 115/236 (48%), Gaps = 17/236 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFN 61 ++LE+ I Y F ++ LL +++TH S H Q ER+EFLGD +LGL IS L+ Sbjct: 7 LTSLEQSINYYFNDKGLLIESVTHRSYYHECLDKSQPYNERVEFLGDAVLGLAISETLYT 66 Query: 62 HFDSA-----------KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 E E+S + LVS + SQ+A++++L +++++ Sbjct: 67 EHVFCRKNDKTIHTIFSESEMSRLKSYLVSKKILSQLAQDINLGNYLKLGKGEEMTGGRE 126 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAK 168 S+ A+ +E++ A++LDGG E A + ++ + S D KTELQE + Sbjct: 127 KLSLLANTLEAIFGAVFLDGGYEAAKAVILGLYQPILTQILSNHTSFDYKTELQEISQKL 186 Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F PEYK+ SG DHD F V + G G +K+ A+ AA L+ G Sbjct: 187 FSSLPEYKLVLESGNDHDKDFVYEVYLDGKCMGTGSGKNKKTAQSAAACMALETLG 242 >gi|86158075|ref|YP_464860.1| ribonuclease III [Anaeromyxobacter dehalogenans 2CP-C] gi|85774586|gb|ABC81423.1| RNAse III [Anaeromyxobacter dehalogenans 2CP-C] Length = 385 Score = 237 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 75/212 (35%), Positives = 116/212 (54%), Gaps = 6/212 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHF 63 LE R+G A A+R ALTH S + ++E ERLEFLGD ++ L +S L F Sbjct: 27 ALEARLGLAVADREAALAALTHKSYVNEHREDGLQDNERLEFLGDAVIDLAVSHRLMERF 86 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 SA+EG+LS ++V + +++AR LDL + +R+ +S+ AD +E++I Sbjct: 87 PSAREGDLSKMRAAVVDEQGLAEMARTLDLGALLRLGRGEELTGGRQKSSLLADAMEAVI 146 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+Y G+ +FVD++ + + +G RD KT+LQE + ++ TP Y+V Sbjct: 147 AAIYRGQGLPAVLSFVDRFLGEAFARAAAGTLDRDFKTQLQELSQSRLRATPRYRVVAEH 206 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 GPDH F V ++ G +G SK+ AEQ Sbjct: 207 GPDHSKTFEVETDLRGEVMGRGAGRSKKDAEQ 238 >gi|170709347|ref|ZP_02899762.1| ribonuclease III [Bacillus anthracis str. A0389] gi|170125742|gb|EDS94654.1| ribonuclease III [Bacillus anthracis str. A0389] Length = 245 Score = 237 bits (606), Expect = 9e-61, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A YLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGAFYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|253699690|ref|YP_003020879.1| ribonuclease III [Geobacter sp. M21] gi|251774540|gb|ACT17121.1| ribonuclease III [Geobacter sp. M21] Length = 232 Score = 237 bits (606), Expect = 9e-61, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 125/232 (53%), Gaps = 8/232 (3%) Query: 1 MSALRYSTLEK---RIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLIS 56 M+ +++ LE R+GY F +R LL +ALTH + + +RLEF GD +L L+S Sbjct: 1 MNDMQHDPLEGIEGRLGYRFRDRGLLAEALTHRTYVNEAGGRDNQRLEFFGDAVLDFLLS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +L F ++EGEL+ +LV + +++A ELDL +R+ + S+ A Sbjct: 61 DMLLVRFPDSREGELTRIRAALVDEASLAKIAIELDLGQALRLGRGEERGGGRQKRSLLA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEY 175 D E+L+AALYLDGG++ A V+ + RDAKTELQE A G P Y Sbjct: 121 DAFEALLAALYLDGGLDPARRVVEALFAPLLSSRDLLSGRDAKTELQEKARLVKGELPRY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKREG 224 ++ SGPDHD RFTV V + +G+ SK+ AEQ AA LK EG Sbjct: 181 QLKEVSGPDHDKRFTVEVYLGEELMGEGVGKSKKEAEQDAARAAFLLLKGEG 232 >gi|229162785|ref|ZP_04290742.1| Ribonuclease 3 [Bacillus cereus R309803] gi|228620667|gb|EEK77536.1| Ribonuclease 3 [Bacillus cereus R309803] Length = 245 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|299144133|ref|ZP_07037213.1| ribonuclease III [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518618|gb|EFI42357.1| ribonuclease III [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 233 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 6/226 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 S L + Y F N + ALTHSS + + S ERLEFLGD +L L+I + Sbjct: 4 NVSILLSLLEYEFKNDKYINIALTHSSYINEHNLKDTVSNERLEFLGDAVLDLIIGEYFY 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + KEG LS + +V+ + ++A + + F+ K+ + S +D +E Sbjct: 64 YSHKNLKEGSLSKLRSKVVNENSLYKIATNISIGDFMYFGKGEIKNKGNLRESTLSDCLE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+Y+DGG++ + + + R ++ + D KT LQE +Y + Sbjct: 124 ALIGAIYIDGGLDAVRKVILRLFHDRIMEVENLKSLEDYKTMLQECIQRNKMGNIKYVIY 183 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP +D F V I+ + G +K+++EQ+AA L R G Sbjct: 184 DEKGPSNDKVFYSNVLINDIIIGNGYGKTKKSSEQLAAKNALIRIG 229 >gi|228477722|ref|ZP_04062351.1| ribonuclease III [Streptococcus salivarius SK126] gi|228250611|gb|EEK09822.1| ribonuclease III [Streptococcus salivarius SK126] Length = 229 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 8/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ L LE+ G F+ + LLE A TH+S ++ ++ ERLEFLGD L L+IS Sbjct: 1 MNQLE-QKLEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + + EGE+S +++V E+ + + +IR+ K +I Sbjct: 60 VYLYKRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ + ALYLD G+ F+++ + ++ G F R D KT LQE V Sbjct: 120 DLWEAFLGALYLDQGLPAVEKFLNQVMIPQ-VEKGNFDRVTDYKTALQERLQVNGTVDIT 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 Y V SGP H FT+ V + G + G+ S Sbjct: 179 YTVIDESGPAHAKEFTMQVAVDGKELSTGLGKS 211 >gi|229820101|ref|YP_002881627.1| ribonuclease III [Beutenbergia cavernae DSM 12333] gi|229566014|gb|ACQ79865.1| ribonuclease III [Beutenbergia cavernae DSM 12333] Length = 252 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 102/219 (46%), Gaps = 6/219 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 + +E+R+G + L A TH S +H + ERLEFLGD +LG++I+ LF Sbjct: 16 SLAAVEERLGVGI-DPELAVLAFTHRSFAHEAGGIPTNERLEFLGDSVLGVVITDHLFRS 74 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EGEL+ + VS + VAREL L + + SI +D +E++ Sbjct: 75 RPDSSEGELAKMRAACVSQRALAVVARELRLGEHLLLGKGESATGGRDKDSILSDTLEAV 134 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YL G+EV + + + + D KT LQE + P Y V Sbjct: 135 IGAVYLTNGLEVVRDVLLRLLGPSLAVAAELGAGLDWKTSLQELSAELGLGAPLYDVDGV 194 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDHD RFT V I+ G +K+ AEQ AA Sbjct: 195 -GPDHDRRFTAHVVIAERVWGSGTGSAKKHAEQEAARTA 232 >gi|269468620|gb|EEZ80264.1| dsRNA-specific ribonuclease [uncultured SUP05 cluster bacterium] Length = 221 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 118/220 (53%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE++I Y F + SLL+ ALTH S+ + + ERLEFLGD ILGL+IS L+ F Sbjct: 2 KKLEQKIDYQFKDISLLKLALTHRSVG---KNNNERLEFLGDSILGLVISRELYKRFTHV 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS + LV +T +Q+A LDL++ + + S K SIQADVVE++ A+ Sbjct: 59 DEGKLSRLRSHLVRGQTLAQLASTLDLSNILILGSGELKSGGFRRESIQADVVEAIFGAV 118 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LD + T + K +K+R + +D KT+LQE+ + P+Y++ G D Sbjct: 119 FLDSDFDTVNTVILKLYKERLDIINPNDSLKDFKTQLQEYLQKRGNALPKYELIKTVGKD 178 Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 H+ FT+ + + S + AEQ A +L R Sbjct: 179 HNAVFTINCSLQDQNMKVKQKATSIKRAEQSCAQALLDRL 218 >gi|152976215|ref|YP_001375732.1| ribonuclease III [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189043291|sp|A7GRH9|RNC_BACCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|152024967|gb|ABS22737.1| Ribonuclease III [Bacillus cytotoxicus NVH 391-98] Length = 245 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++++G F N LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FRAFQQKLGITFTNEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G++ F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLDTVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNSVALGLGSGKSKK 227 >gi|239906016|ref|YP_002952755.1| ribonuclease III [Desulfovibrio magneticus RS-1] gi|239795880|dbj|BAH74869.1| ribonuclease III [Desulfovibrio magneticus RS-1] Length = 243 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 72/217 (33%), Positives = 111/217 (51%), Gaps = 5/217 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 +G+ FA +LL ALTHSS ++ E ERLEFLGD +L L +S LF+ F A EG Sbjct: 22 LGHEFATPALLATALTHSSCANERGEGTRHNERLEFLGDAVLELCVSEELFSLFPEAPEG 81 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 EL++ + LV+ + + +A L LA +R+ S+ +DV E+++ A++LD Sbjct: 82 ELTLLRSQLVNEASLAAMALRLGLAGHVRLGRGEENQGGRSRPSLLSDVFEAVVGAIFLD 141 Query: 130 GGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG A FV + + + + +D K+ LQE+ P Y + +GP+HD Sbjct: 142 GGYTAARAFVSRTFDGQWPERPAAPKIKDFKSRLQEFTQRTHKARPVYALLGSAGPEHDK 201 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 RF V + + ++ S + AEQ AA L G Sbjct: 202 RFEVRLTLPCGREILAVEKSVKKAEQQAARLALTVLG 238 >gi|242280465|ref|YP_002992594.1| ribonuclease III [Desulfovibrio salexigens DSM 2638] gi|242123359|gb|ACS81055.1| ribonuclease III [Desulfovibrio salexigens DSM 2638] Length = 234 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 117/222 (52%), Gaps = 5/222 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLF 60 +S L++ I Y F+ L ALTHSS ++ E ERLEFLGD +L L ++ LF Sbjct: 3 EDFSRLQQGIHYRFSQVKHLATALTHSSWANEQPEPVEDNERLEFLGDAVLELCVTEELF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EG+L+ + LV ++ + +ARELD+ F+++ +S+ AD +E Sbjct: 63 KRFKGAHEGQLTKIRSKLVKEKSLATIARELDINDFLKLGRGEEAQGGRNRSSLLADAME 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++LDGG A F+ + + + + K +D K++LQE A+F P Y +T Sbjct: 123 AVIGAVFLDGGYAEAQKFIMRIFANKWPATFKIESSKDFKSKLQEVTQARFKERPTYVLT 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP+H+ F V + + S + AEQ AAA+ L Sbjct: 183 GTKGPEHEKIFMVNLNLPDGKSFDSEGSSLKKAEQTAAAKAL 224 >gi|222151066|ref|YP_002560220.1| ribonuclease III [Macrococcus caseolyticus JCSC5402] gi|222120189|dbj|BAH17524.1| ribonuclease III [Macrococcus caseolyticus JCSC5402] Length = 242 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 5/223 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 ++ + + + + L +A +HSS + ++ + ERLEFLGD +L L++S Sbjct: 12 KVKLNKVLTHLDIIPNDIELYVQAFSHSSFINDFKLDKNKDNERLEFLGDAVLELMVSQY 71 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ EG L+ ++V + A+ L I + K S+ ADV Sbjct: 72 LYQQHRDLPEGRLTKLRAAIVCEPSLVTFAKMLKFDQLILLGKGEEKTGGRTRPSLIADV 131 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKV 177 E+ + ALYLD G +V F + Y + D KT LQE+ H + Y++ Sbjct: 132 FEAFVGALYLDQGHDVTKRFFNSYIFPAITEDLLHGLIDYKTCLQEYIHKTKNLQVTYRL 191 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP H FT V + G +K+ +EQ AA L Sbjct: 192 VKEEGPAHFKAFTSEVYVEDKVIGTGTGRTKKESEQQAAQTAL 234 >gi|258544604|ref|ZP_05704838.1| ribonuclease III [Cardiobacterium hominis ATCC 15826] gi|258520146|gb|EEV89005.1| ribonuclease III [Cardiobacterium hominis ATCC 15826] Length = 221 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 73/217 (33%), Positives = 112/217 (51%), Gaps = 7/217 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ + Y F + +LL +ALTH S + ERLEFLGD +L + S ++ + E Sbjct: 4 LEQALNYRFTDTALLTRALTHRS---HSAKHNERLEFLGDALLETISSIWIYQNRRDVPE 60 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ ++VS E + +AR L+L + + S K + SI AD VE+LIAA+YL Sbjct: 61 GDLTRLRATIVSGENLAAIARRLNLGQHLHLGSGELKSGGARRNSILADAVEALIAAVYL 120 Query: 129 DGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D K ++ +DAKT+LQE+ + P+Y++T SGP+H Sbjct: 121 DSDYPTCEHITLALLKDDLSALPQTATRLKDAKTQLQEYLQGRGLPLPDYQITEESGPEH 180 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F + SG A S++ AEQ AAA++L + Sbjct: 181 AREFQIEAT-SGDYRAIAHGSSRKKAEQQAAADLLAQ 216 >gi|198283249|ref|YP_002219570.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665431|ref|YP_002425832.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247770|gb|ACH83363.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517644|gb|ACK78230.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270] Length = 226 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 109/220 (49%), Gaps = 5/220 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +L++ +GY F +SLL +ALTH S + ERLEFLGD L +++ LF F Sbjct: 4 LESLQQSVGYQFREQSLLLQALTHRSAGARH---NERLEFLGDAALNFVVAAKLFARFPK 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS LV ET +++A ++ LA + + + + SI+AD +E++I A Sbjct: 61 VSEGDLSRMRARLVREETLAEIAGKIALADSLILGPGEIRSGGARRDSIRADALEAVIGA 120 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +LDGG A V + + G+ RD KT LQE+ + P Y G Sbjct: 121 AFLDGGFGAAERIVAQLVEPLMTDDLGGEELRDPKTRLQEFLQGQGRPVPVYTTVAEKGQ 180 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H+ RF + G + D S+R AEQ AAA +L + Sbjct: 181 AHERRFVARCSVPGAEATEAEDGSRRKAEQQAAALMLAQL 220 >gi|323700157|ref|ZP_08112069.1| ribonuclease III [Desulfovibrio sp. ND132] gi|323460089|gb|EGB15954.1| ribonuclease III [Desulfovibrio desulfuricans ND132] Length = 227 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 114/222 (51%), Gaps = 4/222 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + + L+ I + F LE ALTHSS ++ E ERLEFLGD +L L IS F Sbjct: 1 MDTAALQDCIHHRFGQVKFLETALTHSSFANEQDGFEDNERLEFLGDAVLELCISEEGFK 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + +A EG+L+ + LV ++ + +AREL+L FIR+ ++ AD E+ Sbjct: 61 RYPTAHEGQLTRIRSQLVKEQSLAGIARELELDRFIRLGRGEELQGGRERDALLADAFEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A++LDGG E A + ++ + A +D K+ LQE A F P Y ++ Sbjct: 121 LLGAVFLDGGFEAARRTILDIFEDQWPARAMLPETKDYKSRLQEVAQDVFRDRPVYVLSG 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 SGP+H+ F V V + +G+ S + AEQ AA L+ Sbjct: 181 TSGPEHEKLFEVDVTLPNGERFRGLGTSVKRAEQEAARMGLE 222 >gi|160900693|ref|YP_001566275.1| ribonuclease III [Delftia acidovorans SPH-1] gi|238687167|sp|A9BNJ5|RNC_DELAS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|160366277|gb|ABX37890.1| Ribonuclease III [Delftia acidovorans SPH-1] Length = 227 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 116/224 (51%), Gaps = 7/224 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L + L+ R+ + FA +LL++A+TH S S ++ ERLEFLGD +L L IS+LL+ Sbjct: 1 MPPL-LNALQLRLQHQFAEPALLQRAVTHRSFS---ADNNERLEFLGDSVLNLAISSLLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 S EG+LS +LV T Q+A L L +R+ K SI AD VE Sbjct: 57 QRLSSMPEGDLSRVRANLVKEGTLHQIALRLQLPDLLRLGEGESKSGGKQRPSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD G V ++ + +DAKT LQEW + P+Y+V Sbjct: 117 ALIGAVYLDAGYAAGEKVVHHLFEGVDINPHMRAAEKDAKTALQEWLQGRRMKLPQYEVV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 +G H F V I+ L A+G S+RAAEQ AA +L+ Sbjct: 177 ATTGAAHRQTFEVACAIAELQLQARGTGASRRAAEQTAATAMLE 220 >gi|254993548|ref|ZP_05275738.1| ribonuclease III [Listeria monocytogenes FSL J2-064] Length = 206 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 7/208 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S Sbjct: 1 MN--QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LFN + EG ++ ++V + + A + + ++R+ K ++ A Sbjct: 59 NYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEY 175 DV ES I ALYLD GI+ TF+++ + + D KT+LQE V EY Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEY 178 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQG 203 + +GP H+ F V ++G +G Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKG 206 >gi|154247804|ref|YP_001418762.1| ribonuclease III [Xanthobacter autotrophicus Py2] gi|154161889|gb|ABS69105.1| Ribonuclease III [Xanthobacter autotrophicus Py2] Length = 236 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 92/212 (43%), Positives = 130/212 (61%), Gaps = 5/212 (2%) Query: 1 MSAL--RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLI 55 M+A+ +++E+RIGY F +RS+LE AL+H S SY+R+EFLGD +LG ++ Sbjct: 1 MNAVGSDLASVEERIGYRFRDRSILELALSHISAVKGEAPRLRSYQRMEFLGDHVLGSVV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S +L+ F +EGELS R LV E C++VA+++DL FIR+ + +I Sbjct: 61 SHMLYLAFPEGEEGELSRRLAELVREEACAEVAQDMDLGPFIRLGPGESQSGAHKRRAIL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 ADV E ++AA++LDGG E A V+++W+ R + RDAKT LQEWA A+ P Y Sbjct: 121 ADVAEGVVAAVFLDGGYEAAHQVVERFWRPRLETPRRPLRDAKTVLQEWAQARGLPPPSY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + RSGPDH PRFTV V++ GLA Q S Sbjct: 181 REVTRSGPDHAPRFTVAVDLPGLASEQADGAS 212 >gi|157362928|ref|YP_001469695.1| ribonuclease III [Thermotoga lettingae TMO] gi|189043371|sp|A8F397|RNC_THELT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157313532|gb|ABV32631.1| Ribonuclease III [Thermotoga lettingae TMO] Length = 238 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 118/224 (52%), Gaps = 9/224 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTLLFN 61 ++IGY F LL AL HSS +H + ES ERLEFLGD ++ LL++ L+ Sbjct: 12 FMEKIGYRFYEPELLYNALCHSSYAHEQKQRGRKDVESNERLEFLGDAVIDLLLAEYLYL 71 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A EG ++ ++ S E +Q+AR+++L ++ + S+ AD++E+ Sbjct: 72 EFPEASEGVMAKVKAAIASEEALAQIARDINLGRYMFLGRGEEVSSGRERDSLLADMLEA 131 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++AA+Y+DGG+ Y+ + + + GK D KT LQE A++ PEY + Sbjct: 132 VVAAVYIDGGLTAVKKVFLSYFAKYAKEVVEGKIVFDYKTSLQEITQARYRKLPEYVLVN 191 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +FTV + +SG A G S + AE+ AA +++ Sbjct: 192 EKGPSHMKKFTVELRLSGKLIAVGEGPSIKEAEKEAARRAIEKL 235 >gi|270265300|ref|ZP_06193561.1| ribonuclease 3 [Serratia odorifera 4Rx13] gi|270040704|gb|EFA13807.1| ribonuclease 3 [Serratia odorifera 4Rx13] Length = 226 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQNVERLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|157371904|ref|YP_001479893.1| ribonuclease III [Serratia proteamaculans 568] gi|189043344|sp|A8GI25|RNC_SERP5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157323668|gb|ABV42765.1| Ribonuclease III [Serratia proteamaculans 568] Length = 226 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ LF Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKH---NERLEFLGDSILSFVIANALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ RE DL +R+ K SI AD VE Sbjct: 58 QRFPRVDEGDMSRMRATLVRGNTLAEMGREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVERLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|85716284|ref|ZP_01047258.1| ribonuclease III [Nitrobacter sp. Nb-311A] gi|85696956|gb|EAQ34840.1| ribonuclease III [Nitrobacter sp. Nb-311A] Length = 266 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 91/203 (44%), Positives = 122/203 (60%), Gaps = 3/203 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +E+R+G+ FA+ SLL A TH S S +SY+RLEFLGD +LGL+IS +L+ F Sbjct: 44 AAIEQRLGHKFADISLLTTAFTHVSALKSSRGRSDSYQRLEFLGDHVLGLVISDMLYRAF 103 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS R LV ETC VAR LDL +++ + S+ D+ E++I Sbjct: 104 PQADEGELSKRLADLVRKETCIDVARSLDLQEGVKLGAVGAGAGARLRRSVLGDICEAVI 163 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG VA FV++ W +R K + RD KT LQEWA K TP Y+ R+GP Sbjct: 164 GAVYLDGGYAVAAAFVERNWLERMRKPVRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 223 Query: 184 DHDPRFTVVVEISGLAPAQGMDC 206 HDPRF V VE+ GL ++G+ Sbjct: 224 HHDPRFRVAVELPGLEVSEGIGG 246 >gi|229031479|ref|ZP_04187479.1| Ribonuclease 3 [Bacillus cereus AH1271] gi|228729768|gb|EEL80748.1| Ribonuclease 3 [Bacillus cereus AH1271] Length = 245 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F++ LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|114765524|ref|ZP_01444632.1| Ribonuclease III [Pelagibaca bermudensis HTCC2601] gi|114542117|gb|EAU45149.1| Ribonuclease III [Roseovarius sp. HTCC2601] Length = 227 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 86/203 (42%), Positives = 121/203 (59%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE+R+G+ F LL +ALTHSS+S +E +RLEFLGDR+LGL+++ L +A Sbjct: 9 ALEERLGHRFDRPELLRRALTHSSMSAPGREDNQRLEFLGDRVLGLVMAEALLADDRNAS 68 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+L+ R+N+LV ETC+ VARE+DL + +++ ++ D +E++IAA+Y Sbjct: 69 EGQLAPRYNALVRKETCADVAREVDLGAALKLGRSEMMSGGRRKMALLGDAMEAVIAAVY 128 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 LD G E A V + W R + + RDAKT LQEWA A+ P Y T RSGPDH P Sbjct: 129 LDAGFEAAKDLVRRLWGDRVTRVDEDARDAKTSLQEWAQARGMPPPAYVETARSGPDHAP 188 Query: 188 RFTVVVEISGLAPAQGMDCSKRA 210 FT+ +S AQ +KR Sbjct: 189 VFTIEARLSSGETAQATAGAKRK 211 >gi|304310579|ref|YP_003810177.1| Ribonuclease III [gamma proteobacterium HdN1] gi|301796312|emb|CBL44520.1| Ribonuclease III [gamma proteobacterium HdN1] Length = 231 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 109/222 (49%), Gaps = 5/222 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S L RIGY F + +LL ALTH S+S Q + ERLEFLGD +L L+I LF F Sbjct: 5 SLLCSRIGYTFNDFNLLNLALTHRSVS--GQTNNERLEFLGDSVLNLIIGGELFTKFPQG 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 KEG+LS SLV ET +Q+ E L F+ + K + S AD VE++I A+ Sbjct: 63 KEGQLSRLRASLVRGETLAQIGGEFGLGEFLILGPGEHKSGGARRESTLADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + G A V +++ R AL +D KT LQE PEY++ SG Sbjct: 123 FCESGYNEARKVVLRWFDSRIQALTLNDTVKDNKTRLQEILQHLKMGLPEYRILSVSGSS 182 Query: 185 HDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 H F + I+G G S+R AEQ AA L + Sbjct: 183 HQQVFQIECAITGVEERFAGSGLSRRQAEQQAAGFALASLSV 224 >gi|195952887|ref|YP_002121177.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1] gi|226741373|sp|B4U7T8|RNC_HYDS0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|195932499|gb|ACG57199.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1] Length = 232 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 118/222 (53%), Gaps = 7/222 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE++IGY F +++L++KA TH S S S E+YE LEFLGD ++ + +L F Sbjct: 3 SFELLEEKIGYRFKDKNLVKKAFTHISFSKS-SENYEVLEFLGDALVNFMTVNILVEAFP 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + KEGELS + L+S E + +A+ L+ +I +S + SI DV E+ A Sbjct: 62 NKKEGELSQLKSFLISEEFLASLAKSLNFEKYILISKGEELKGSNKNPSILCDVFEAFWA 121 Query: 125 ALYLDGGIE--VAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 A+Y+D G + + + + ++K + L+ S ++D KT LQE K+ P Y V Sbjct: 122 AIYIDSGYDCKLTKSLFEHHFKSQILEMVNSNSLKQDYKTALQEITQKKWKERPIYNVIS 181 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP+H FTV L G SK+ AEQ AA +L+ Sbjct: 182 VEGPEHRKTFTVECLFKDLR-TTGKGNSKKYAEQEAAKNMLQ 222 >gi|319948353|ref|ZP_08022497.1| ribonuclease III [Dietzia cinnamea P4] gi|319437984|gb|EFV92960.1| ribonuclease III [Dietzia cinnamea P4] Length = 237 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 8/205 (3%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 L +ALTH S ++ + ERLEFLGD +L L+++ L+N + EG+L+ SLV Sbjct: 20 LATQALTHRSYAYEHGGLPHNERLEFLGDAVLELVVTEYLYNAYPDRPEGDLAKIRASLV 79 Query: 80 SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + + +AREL L +R+ SI AD +E++ ++YL G+E A Sbjct: 80 NTYVLADIARELGDGGLGRHLRLGRGEELTGGRDKHSILADTLEAVFGSVYLTHGLETAR 139 Query: 137 TFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 ++K R + D KT LQE + Y++T +GPDHD F+ VV Sbjct: 140 GLIEKIIGDRLTVVPHLGAALDWKTSLQEKCASLGRSKARYEITS-TGPDHDKTFSAVVF 198 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEV 219 + +G +K+ AEQ AA + Sbjct: 199 VGDDPLGEGTGRTKKEAEQKAAEQA 223 >gi|197119571|ref|YP_002139998.1| ribonuclease III [Geobacter bemidjiensis Bem] gi|197088931|gb|ACH40202.1| ribonuclease III [Geobacter bemidjiensis Bem] Length = 232 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 1 MSALRYSTLEK---RIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLIS 56 MS + + LE R+GY F++R LL +ALTH + + +RLEF GD +L L+S Sbjct: 1 MSDMLHDPLEGIEGRLGYRFSDRGLLVEALTHRTYVNEAGGRDNQRLEFFGDAVLDFLLS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +L F ++EGEL+ +LV + ++A ELDL +R+ K S+ A Sbjct: 61 DMLLVRFPDSREGELTRIRAALVDEASLGKIASELDLGQALRLGRGEEKGGGRQKRSLLA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEY 175 D E+L+AALYLDGG++ A V+ + RDAKTELQE A G P Y Sbjct: 121 DAFEALLAALYLDGGLDPARRVVEALFAPLLSSRDLLSGRDAKTELQETARLFKGELPRY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKREG 224 ++ +GPDHD RFTV V + +G+ +K+ AEQ AA LK EG Sbjct: 181 QLKQVTGPDHDKRFTVEVYLGEELMGEGVGRTKKEAEQDAARAAFLLLKGEG 232 >gi|24379904|ref|NP_721859.1| ribonuclease III [Streptococcus mutans UA159] gi|81451148|sp|Q8DT66|RNC_STRMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|24377882|gb|AAN59165.1|AE014983_6 putative ribonuclease III [Streptococcus mutans UA159] Length = 231 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 9/226 (3%) Query: 7 STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 TLEK++ F+++ LLE A TH+S ++ ++ ERLEFLGD +L L IS Sbjct: 2 KTLEKKLAEDFKIVFSDKELLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLTISHY 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF+ + EG+LS + +V E+ + +R +I++ K +I D+ Sbjct: 62 LFDKYPQKAEGDLSKMRSMIVREESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDL 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + AL LD G++ F+++ + + + D KT LQE V +Y+V Sbjct: 122 FEAFLGALLLDAGLKAVEAFLNQVVIPKVENNNYERVTDYKTALQELLQVDGDVLIDYEV 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V V ++ + G SK+ AEQ AA L++ Sbjct: 182 LKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALEKL 227 >gi|25028532|ref|NP_738586.1| ribonuclease III [Corynebacterium efficiens YS-314] gi|23493817|dbj|BAC18786.1| putative ribonuclease III [Corynebacterium efficiens YS-314] Length = 255 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 6/226 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 A+ ++ L +R+G +R LL ALTH S ++ + ERLEFLGD +LGL ++ L Sbjct: 27 DAVNHADLLERLGVDI-DRDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLAVANRL 85 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S+ E ++S S+VS + +ARE++L FI + SI AD Sbjct: 86 YELYPSSPESDISKMRASIVSRYGLADIAREINLGEFILLGKGELLTEGRSKDSILADTT 145 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+L+ A++ G EVA V + + + +D KT LQE + EY+ Sbjct: 146 EALLGAIFRQHGYEVARDVVLTLFHHKINHASAKGIHQDWKTTLQEELAQRKKPMVEYQT 205 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T GPDHD FT VV + + +G +K+ AEQ AA + + Sbjct: 206 TSV-GPDHDLLFTAVVYLGDVEMGRGEGPNKKLAEQEAARQAFLKL 250 >gi|56964064|ref|YP_175795.1| ribonuclease III [Bacillus clausii KSM-K16] gi|81365967|sp|Q5WFM6|RNC_BACSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56910307|dbj|BAD64834.1| ribonuclease III [Bacillus clausii KSM-K16] Length = 260 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 62/213 (29%), Positives = 100/213 (46%), Gaps = 5/213 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L R G F NR LL +A THSS + + ERLEFLGD +L L +S LF Sbjct: 32 QFDDLLVRTGLTFENRKLLIQAFTHSSYVNEQRIFSSSDNERLEFLGDAVLELAVSQYLF 91 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+++ S+V + ++ A EL + + ++ ADV E Sbjct: 92 KTYKNMSEGDMTKLRASIVCEPSLARFAEELQFGKLVLLGKGEEVTGGRTRPALLADVFE 151 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALY+D G+E F+ ++ + + ++ D K++LQE+ Y + Sbjct: 152 AFIGALYMDQGLEPVFMFLARFMYPKIKEGAFTYKMDFKSQLQEFVQRDNRGQIRYLIVQ 211 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 GP HD F V+++ G SK+ AE Sbjct: 212 ERGPAHDREFVSDVQLNEETIGTGTGRSKKEAE 244 >gi|310828474|ref|YP_003960831.1| ribonuclease III [Eubacterium limosum KIST612] gi|308740208|gb|ADO37868.1| ribonuclease III [Eubacterium limosum KIST612] Length = 222 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 69/218 (31%), Positives = 112/218 (51%), Gaps = 4/218 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E RI Y F ++ LL+ ALTHSS S + ERLEFLGD +L L+IS L+ ++ Sbjct: 2 KRIEDRIAYTFKDKELLKVALTHSSHS-GTTTNNERLEFLGDAVLELIISEYLY-KYNKL 59 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+++ +++V AE+ SQ A +L+L ++ + S A+ E+++ A+ Sbjct: 60 SEGKMTKIRSNIVCAESLSQAASDLNLGEYMLLGKGEIVTGGRKRKSNLANAFEAVMGAV 119 Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LD + V ++ SG +D KTELQE EY + GP+ Sbjct: 120 FLDSDYDTTKKVVLGTLEKNIELALSGGLIKDYKTELQEQIQKHSDNAIEYVLEKSEGPE 179 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H+ F + + +G+ ++G SK+ AEQ AA L + Sbjct: 180 HNKTFFIDLTFNGVVVSKGTGKSKKEAEQNAAKNYLFK 217 >gi|290580116|ref|YP_003484508.1| putative ribonuclease III [Streptococcus mutans NN2025] gi|254997015|dbj|BAH87616.1| putative ribonuclease III [Streptococcus mutans NN2025] Length = 231 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 9/226 (3%) Query: 7 STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 TLEK++ F+++ LLE A TH+S ++ ++ ERLEFLGD +L L IS Sbjct: 2 KTLEKKLAEDFKIVFSDKELLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLTISRY 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF+ + EG+LS + +V E+ + +R +I++ K +I D+ Sbjct: 62 LFDKYPQKAEGDLSKMRSMIVREESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDL 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + AL LD G++ F+++ + + + D KT LQE V +Y+V Sbjct: 122 FEAFLGALLLDAGLKAVEAFLNQVVIPKVENNNYERVTDYKTALQELLQVDGDVLIDYEV 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V V ++ + G SK+ AEQ AA L++ Sbjct: 182 LKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALEKL 227 >gi|229174515|ref|ZP_04302047.1| Ribonuclease 3 [Bacillus cereus MM3] gi|228609075|gb|EEK66365.1| Ribonuclease 3 [Bacillus cereus MM3] Length = 245 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F++ LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|126739723|ref|ZP_01755415.1| ribonuclease III [Roseobacter sp. SK209-2-6] gi|126719369|gb|EBA16079.1| ribonuclease III [Roseobacter sp. SK209-2-6] Length = 228 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 81/202 (40%), Positives = 116/202 (57%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 E+RIGY F LL +ALTH S+S ++ +RLEFLGDR+LGL+++T + A Sbjct: 9 AFEERIGYRFKRVDLLVRALTHPSVSSPNRKDNQRLEFLGDRVLGLVMATAMLESDKEAS 68 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+L+ RFN+LV ETC+ VARE+DL + +++ ++ D +E++IAA+Y Sbjct: 69 EGQLAPRFNALVRKETCADVAREIDLGAVLKLGRSEMMSGGRRKLALLGDGMEAVIAAVY 128 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 D G EVA + + W QR + + RD KT LQE+ A+ P Y R GPDH+P Sbjct: 129 KDAGFEVAQDMILRLWGQRIFQVEEDARDPKTALQEYVQARRQPPPAYVQVSRQGPDHEP 188 Query: 188 RFTVVVEISGLAPAQGMDCSKR 209 FT+ V + Q SKR Sbjct: 189 IFTIAVRLQDGTEEQASAGSKR 210 >gi|126728500|ref|ZP_01744316.1| Ribonuclease III [Sagittula stellata E-37] gi|126711465|gb|EBA10515.1| Ribonuclease III [Sagittula stellata E-37] Length = 225 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 120/206 (58%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + LE ++G+ F +++LL +A+TH+S+S +E +RLEFLGDR+LGL+++ L H Sbjct: 4 SAEIKALEDKLGHTFRDKALLRRAVTHASMSGPGREDNQRLEFLGDRVLGLVMAEALLAH 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 +A EG L+ RFN+LV ETC++VAR + + +++ + ++ D +E++ Sbjct: 64 DRNASEGLLAPRFNALVRKETCAEVARTIGVGDALKLGRSEQMSGGRRKQALLGDAMEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YLDGG +VA + + W + +DAKT LQEWA + P Y RSG Sbjct: 124 IAAVYLDGGFDVAQDMILRLWAPLIASVEEDAKDAKTTLQEWAQGRGMTPPSYTEVERSG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSK 208 PDH P FT+ ++ A+ +K Sbjct: 184 PDHAPVFTIEARLATGETARATAGNK 209 >gi|317491018|ref|ZP_07949454.1| ribonuclease III [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920565|gb|EFV41888.1| ribonuclease III [Enterobacteriaceae bacterium 9_2_54FAA] Length = 226 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+K++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVTNRLQKKLGYTFQQQELLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIERLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G+ S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVIGVGSSRRK 210 >gi|256832889|ref|YP_003161616.1| ribonuclease III [Jonesia denitrificans DSM 20603] gi|256686420|gb|ACV09313.1| ribonuclease III [Jonesia denitrificans DSM 20603] Length = 241 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 73/214 (34%), Positives = 103/214 (48%), Gaps = 6/214 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 S L ++G + LL ALTH S +H + ERLEFLGD +LGL+ + LF Sbjct: 13 SELLSKLGIHL-DPELLVLALTHRSFAHEAGGIPTNERLEFLGDAVLGLVSAEALFRGHP 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ + VS +Q AR L+L S+I + + + SI +D VE++I Sbjct: 72 DRPEGDLARMRAATVSQRPLAQAARTLNLGSYILLGKGESRTGGADKDSILSDTVEAIIG 131 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+Y+ G+E A FV + + ++ D KT +QE P Y T + G Sbjct: 132 AVYVTHGLETAREFVHRLLGETMREAATMGAGLDWKTAIQELCAQLGYPQPTYDFTSQ-G 190 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 PDH FT V I G SK+ AEQ AA Sbjct: 191 PDHARVFTSTVVIEDRRYGSGEGTSKKLAEQQAA 224 >gi|148259270|ref|YP_001233397.1| ribonuclease III [Acidiphilium cryptum JF-5] gi|146400951|gb|ABQ29478.1| RNAse III [Acidiphilium cryptum JF-5] Length = 221 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 84/216 (38%), Positives = 124/216 (57%), Gaps = 3/216 (1%) Query: 10 EKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E +G+ FA LL +ALTH S S ERLEF+GDR+LGLLI+ L F +E Sbjct: 6 EALLGHRFARPDLLAQALTHRSAVGQGGLGSNERLEFIGDRVLGLLIAEWLIERFPHERE 65 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L R LVS ++ +++A +A + VS + ++ AD +E+LI ALYL Sbjct: 66 GGLGPRLAHLVSRQSLAEIAEHGGIAGLLSVSPGESRRGVRNRATVLADALEALIGALYL 125 Query: 129 DGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 DGG+E A F+ + + R + +D KT LQE+A A+ V P Y++ R+GP H P Sbjct: 126 DGGLEPARLFIRRIFAPRIDGQPSAPPKDPKTALQEYALARGPVLPAYELVERTGPSHAP 185 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF + V ++G A+G+ +KR AEQ AA ++L++ Sbjct: 186 RFRIRVTVAGRT-AEGLAGTKREAEQNAARDLLEQL 220 >gi|229019045|ref|ZP_04175885.1| Ribonuclease 3 [Bacillus cereus AH1273] gi|228742247|gb|EEL92407.1| Ribonuclease 3 [Bacillus cereus AH1273] Length = 245 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F++ LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|238759682|ref|ZP_04620842.1| Ribonuclease 3 [Yersinia aldovae ATCC 35236] gi|238702110|gb|EEP94667.1| Ribonuclease 3 [Yersinia aldovae ATCC 35236] Length = 226 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKH---NERLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIHTIERLILAWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVVGTGSSRRK 210 >gi|255325275|ref|ZP_05366381.1| ribonuclease III [Corynebacterium tuberculostearicum SK141] gi|255297840|gb|EET77151.1| ribonuclease III [Corynebacterium tuberculostearicum SK141] Length = 256 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 109/222 (49%), Gaps = 6/222 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFN 61 + ++ L + +G L ALTH S ++ + + ERLEFLGD +LGL +++ L+ Sbjct: 20 VDHTPLLESLGVDLQ-PEHLRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVASQLYI 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + S E ++S S+VS S +ARE++L I + + SI AD E+ Sbjct: 79 TYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 + A+Y + G E A + + + ++ + R D KT LQE P Y T Sbjct: 139 IFGAIYREHGFETARDVILRLFAEKIDNATVSGRHLDWKTTLQELCAELKAPMPVYSATS 198 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +GP+HD F V ++GL G+ +K+ AEQ AA E + Sbjct: 199 -TGPEHDQTFNAVATVAGLTVGNGVGHNKKLAEQQAAQEACQ 239 >gi|311739750|ref|ZP_07713585.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035] gi|311305566|gb|EFQ81634.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035] Length = 256 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 6/222 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFN 61 + +S L + +G L ALTH S ++ + + ERLEFLGD +LGL +++ L+ Sbjct: 20 VDHSPLLESLGVDLQ-PEHLRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVASQLYI 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + S E ++S S+VS S +ARE++L I + + SI AD E+ Sbjct: 79 TYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 + A+Y + G E A + + + ++ + R D KT LQE P Y T Sbjct: 139 IFGAIYREHGFETARDVILRLFAEKIDNATVSGRHLDWKTTLQELCAELKAPMPVYSATS 198 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +GP+HD F V ++GL G+ +K+ AEQ AA E + Sbjct: 199 -TGPEHDQTFNAVATVAGLTVGNGVGHNKKLAEQQAAQEACQ 239 >gi|121605952|ref|YP_983281.1| ribonuclease III [Polaromonas naphthalenivorans CJ2] gi|120594921|gb|ABM38360.1| RNAse III [Polaromonas naphthalenivorans CJ2] Length = 233 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 77/218 (35%), Positives = 110/218 (50%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L+KR+ + FA LL +ALTH S S + ER+EFLGD +L L ++ LL+ Sbjct: 11 LQALQKRLQHEFAKPKLLVQALTHRSFSSDH---NERIEFLGDSVLNLAVAGLLYEQLSE 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS +LV +T Q+A L L +R+ + S+ AD +E++I A Sbjct: 68 LPEGDLSRVRANLVKQDTLHQLAVVLGLPDLLRLGEGEARSGGKNRPSMLADALEAVIGA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD G + A V + +K + +D KTELQEW + P YKV G Sbjct: 128 VYLDAGYDQADQLVRRLFKDVQVNPQMKAIGKDPKTELQEWLQGRKMRLPLYKVVSTMGA 187 Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220 H F V EI+ A+ G+ S+RA EQ AA +L Sbjct: 188 AHQQTFEVECEIAEFGRAERGIGVSRRAGEQAAATAML 225 >gi|123441363|ref|YP_001005350.1| ribonuclease III [Yersinia enterocolitica subsp. enterocolitica 8081] gi|189043376|sp|A1JKK3|RNC_YERE8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122088324|emb|CAL11115.1| ribonuclease III [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 226 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 109/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKH---NERLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIHTIERLILAWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRK 210 >gi|332162691|ref|YP_004299268.1| ribonuclease III [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|33332418|gb|AAQ11416.1| ribonuclease III [Yersinia enterocolitica] gi|318606796|emb|CBY28294.1| ribonuclease III [Yersinia enterocolitica subsp. palearctica Y11] gi|325666921|gb|ADZ43565.1| ribonuclease III [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 226 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 109/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQDLLLQALTHRSASSKH---NERLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIHTIERLILAWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRK 210 >gi|57506125|ref|ZP_00372047.1| ribonuclease III (rnc) [Campylobacter upsaliensis RM3195] gi|57015609|gb|EAL52401.1| ribonuclease III (rnc) [Campylobacter upsaliensis RM3195] Length = 224 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 122/222 (54%), Gaps = 4/222 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE ++ Y F + LL ALTH S +Y + ERLEFLGD +L L++ LF+ F Sbjct: 3 KLELLEAKLNYKFKEQKLLIYALTHKSAKKNY--NNERLEFLGDAVLDLVVGEFLFHKFK 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+LS +LV+ ++ +++A L+L FI +S + + SI +D E+LI Sbjct: 61 NEAEGDLSKLRAALVNEKSFAKIATSLNLGDFIFMSIAEQNNGGKTKPSILSDTFEALIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL+L+ G A + ++ + + +D KT+LQE AK G+TPEY+ G Sbjct: 121 ALHLEAGFIKAKEIALRLIEENFPNIDAKSLFKDYKTKLQEITQAKMGLTPEYETQRAFG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 181 PDHQKSFEIALNLEGKEMARAIASSKKEAQQMAAKLTLEKLG 222 >gi|326402425|ref|YP_004282506.1| ribonuclease III [Acidiphilium multivorum AIU301] gi|325049286|dbj|BAJ79624.1| ribonuclease III [Acidiphilium multivorum AIU301] Length = 221 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 85/216 (39%), Positives = 125/216 (57%), Gaps = 3/216 (1%) Query: 10 EKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E +G+ FA LL +ALTH S S ERLEF+GDR+LGLLI+ L F +E Sbjct: 6 EALLGHRFARPDLLAQALTHRSAVGQGGLGSNERLEFIGDRVLGLLIAEWLIERFPHERE 65 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L R LVS ++ +++A +A + VS + ++ AD +E+LI ALYL Sbjct: 66 GGLGPRLAHLVSRQSLAEIAEHGGIAGLLSVSPGESRRGVRNRATVLADALEALIGALYL 125 Query: 129 DGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 DGG+E A F+ + + R + +D KT LQE+A A+ V P Y++ R+GP H P Sbjct: 126 DGGLEPARLFIRRIFAPRIDGQPSAPPKDPKTALQEYALARGPVLPAYELVERTGPSHAP 185 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF + V ++G A A+G+ +KR AEQ AA ++L++ Sbjct: 186 RFRIRVTVAGRA-AEGLAGTKREAEQNAARDLLEQL 220 >gi|75676109|ref|YP_318530.1| ribonuclease III [Nitrobacter winogradskyi Nb-255] gi|90101631|sp|Q3SRB3|RNC_NITWN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|74420979|gb|ABA05178.1| RNAse III [Nitrobacter winogradskyi Nb-255] Length = 266 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 88/203 (43%), Positives = 121/203 (59%), Gaps = 3/203 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +E+R+G+ FA+ SLL A TH S S +SY+RLEFLGD +LGL++S +L+ F Sbjct: 44 AAIEQRLGHTFADISLLTTAFTHVSALKSSRGRCDSYQRLEFLGDHVLGLVVSDMLYRAF 103 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS R LV ETC VA+ LDL +++ + S+ D+ E++I Sbjct: 104 PKADEGELSKRLADLVRKETCIDVAKSLDLQEGVKLGAVGAGAGARLRRSVLGDICEAVI 163 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG A FV++ W +R K + RD KT LQEWA K TP Y+ R+GP Sbjct: 164 GAVYLDGGYAAAAAFVERNWLERMRKPVRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 223 Query: 184 DHDPRFTVVVEISGLAPAQGMDC 206 HDPRF V VE+ GL ++G+ Sbjct: 224 HHDPRFRVAVELPGLESSEGIGG 246 >gi|121996844|ref|YP_001001631.1| ribonuclease III [Halorhodospira halophila SL1] gi|121588249|gb|ABM60829.1| RNAse III [Halorhodospira halophila SL1] Length = 234 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 105/219 (47%), Gaps = 6/219 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L++R+ Y F L++A+TH S + ERLEFLGD +L +++ +F+ Sbjct: 3 DLERLQQRLDYQFLELERLQEAVTHRSAGGRH---NERLEFLGDSVLNFVVAHEVFHRRP 59 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG LS SLV+ + + +AR+++L +R+ K SI AD +E++ Sbjct: 60 TDSEGTLSRLRASLVNRSSLAAIARDIELGDHLRLGGGELKSGGHRRDSILADALEAVFG 119 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G E A + ++ R L +D KT LQE + P Y+V G Sbjct: 120 AVYLDAGFETAARVITGLYRSRLESLPDKAVLKDPKTRLQEVLQSTRRPLPGYQVLDVRG 179 Query: 183 PDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220 H RF V +S G S+R AEQ AA +L Sbjct: 180 RAHHQRFQVECRLSDSEQTTLGEAGSRRQAEQRAAEAML 218 >gi|91205996|ref|YP_538351.1| ribonuclease III [Rickettsia bellii RML369-C] gi|157826640|ref|YP_001495704.1| ribonuclease III [Rickettsia bellii OSU 85-389] gi|122425284|sp|Q1RHA2|RNC_RICBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043340|sp|A8GYE2|RNC_RICB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|91069540|gb|ABE05262.1| Ribonuclease III [Rickettsia bellii RML369-C] gi|157801944|gb|ABV78667.1| ribonuclease III [Rickettsia bellii OSU 85-389] Length = 227 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 117/224 (52%), Gaps = 5/224 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 + LEK + Y+F N++LL +AL+H S+ ++ + YERLEFLGD +L L+I+ +L Sbjct: 2 ESFEELEKLLDYSFKNKALLTEALSHPSLRQHHEYKANKDYERLEFLGDAVLNLIITEIL 61 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 FN+F EG L+ + LV ET V +L L ++I ++ + +V Sbjct: 62 FNNFKEYNEGNLAKIRSYLVCKETICVVGAKLGLKNYIIMTHGEEIAGGRDNPNNIENVT 121 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+LIAA+YLD I + K W + D KT LQEWA +K P Y++ Sbjct: 122 EALIAAIYLDSDITTIHNIIGKLWAEFIKVKDLTDYDPKTALQEWAQSKDHHIPIYRLIK 181 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 R G H FTV V+I+G G S + AE+ AA E+L + Sbjct: 182 REGVAHLSTFTVSVKINGYEQ-TGKGHSIKEAEKNAARELLHKL 224 >gi|239636288|ref|ZP_04677290.1| ribonuclease III [Staphylococcus warneri L37603] gi|239597643|gb|EEQ80138.1| ribonuclease III [Staphylococcus warneri L37603] Length = 243 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 62/216 (28%), Positives = 98/216 (45%), Gaps = 5/216 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ + N L ++A +HSS + + + ERLEFLGD +L L +S LF+ E Sbjct: 24 LGFEYNNIELYQQAFSHSSFINDFNMDRLDHNERLEFLGDAVLELTVSRYLFDKHPDLPE 83 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ ++V + A ++ L I + K S+ +D E+ + ALYL Sbjct: 84 GNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYL 143 Query: 129 DGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 D G++ F DK D KT+ QE+ H + Y++ GP H Sbjct: 144 DQGLDTVWDFADKIIFPYVEDDELDGVVDFKTQFQEFVHRQNKGDVTYRLIKEEGPAHHR 203 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 FT V + A A+G +K+ +EQ AA K+ Sbjct: 204 LFTSEVILEKQAIAEGQGKTKKESEQKAAERAYKQM 239 >gi|293376124|ref|ZP_06622372.1| ribonuclease III [Turicibacter sanguinis PC909] gi|325841637|ref|ZP_08167414.1| ribonuclease III [Turicibacter sp. HGF1] gi|292645251|gb|EFF63313.1| ribonuclease III [Turicibacter sanguinis PC909] gi|325489915|gb|EGC92263.1| ribonuclease III [Turicibacter sp. HGF1] Length = 236 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 5/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + + K AF +A THSS + ++ E ERLE+LGD +L L +S LF Sbjct: 6 QLAEFLKENKIAFRQLDRYCQAFTHSSYVNEHRHLKIEDNERLEYLGDAVLELTVSNYLF 65 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N S EGE++ LV + AR L+L + + ++ AD E Sbjct: 66 NLKPSLSEGEMTKIRAQLVCEPSLESYARNLNLGKLMLLGRGEENSGGRERPTVLADAFE 125 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179 + + A+YLD G++ +FV + + + + D K+ LQE A EY++ Sbjct: 126 AFVGAMYLDLGMDTVYSFVHEIIHKAYQQGEVTQVFDYKSTLQELVQADSKKAIEYRIIS 185 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +GP H+ F +V + G+ +G+ +K+ AEQ AA ++ Sbjct: 186 ETGPAHNRSFEAIVLLDGITLGRGIGKTKKEAEQQAAKGAIE 227 >gi|22125197|ref|NP_668620.1| ribonuclease III [Yersinia pestis KIM 10] gi|45442304|ref|NP_993843.1| ribonuclease III [Yersinia pestis biovar Microtus str. 91001] gi|51597206|ref|YP_071397.1| ribonuclease III [Yersinia pseudotuberculosis IP 32953] gi|108808446|ref|YP_652362.1| ribonuclease III [Yersinia pestis Antiqua] gi|108811369|ref|YP_647136.1| ribonuclease III [Yersinia pestis Nepal516] gi|145598837|ref|YP_001162913.1| ribonuclease III [Yersinia pestis Pestoides F] gi|149365390|ref|ZP_01887425.1| ribonuclease III [Yersinia pestis CA88-4125] gi|153949383|ref|YP_001400117.1| ribonuclease III [Yersinia pseudotuberculosis IP 31758] gi|162419239|ref|YP_001607935.1| ribonuclease III [Yersinia pestis Angola] gi|165925157|ref|ZP_02220989.1| ribonuclease III [Yersinia pestis biovar Orientalis str. F1991016] gi|165937011|ref|ZP_02225576.1| ribonuclease III [Yersinia pestis biovar Orientalis str. IP275] gi|166008358|ref|ZP_02229256.1| ribonuclease III [Yersinia pestis biovar Antiqua str. E1979001] gi|166212532|ref|ZP_02238567.1| ribonuclease III [Yersinia pestis biovar Antiqua str. B42003004] gi|167399049|ref|ZP_02304573.1| ribonuclease III [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421411|ref|ZP_02313164.1| ribonuclease III [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423187|ref|ZP_02314940.1| ribonuclease III [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218929790|ref|YP_002347665.1| ribonuclease III [Yersinia pestis CO92] gi|229838281|ref|ZP_04458440.1| RNase III [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895523|ref|ZP_04510694.1| RNase III [Yersinia pestis Pestoides A] gi|229898845|ref|ZP_04513990.1| RNase III [Yersinia pestis biovar Orientalis str. India 195] gi|229901619|ref|ZP_04516741.1| RNase III [Yersinia pestis Nepal516] gi|270489808|ref|ZP_06206882.1| ribonuclease III [Yersinia pestis KIM D27] gi|284988625|ref|YP_001719940.2| ribonuclease III [Yersinia pseudotuberculosis YPIII] gi|284988628|ref|YP_001873415.2| ribonuclease III [Yersinia pseudotuberculosis PB1/+] gi|22654064|sp|Q8ZD72|RNC_YERPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|73917588|sp|Q667V1|RNC_YERPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122980240|sp|Q1CKE4|RNC_YERPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|123372250|sp|Q1C555|RNC_YERPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043377|sp|A7FFT9|RNC_YERP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043378|sp|A4TKX8|RNC_YERPP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238687295|sp|A9R402|RNC_YERPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|21958062|gb|AAM84871.1|AE013732_3 RNase III, ds RNA [Yersinia pestis KIM 10] gi|45437168|gb|AAS62720.1| ribonuclease III [Yersinia pestis biovar Microtus str. 91001] gi|51590488|emb|CAH22128.1| ribonuclease III [Yersinia pseudotuberculosis IP 32953] gi|108775017|gb|ABG17536.1| RNAse III [Yersinia pestis Nepal516] gi|108780359|gb|ABG14417.1| RNAse III [Yersinia pestis Antiqua] gi|115348401|emb|CAL21337.1| ribonuclease III [Yersinia pestis CO92] gi|145210533|gb|ABP39940.1| RNAse III [Yersinia pestis Pestoides F] gi|149291803|gb|EDM41877.1| ribonuclease III [Yersinia pestis CA88-4125] gi|152960878|gb|ABS48339.1| ribonuclease III [Yersinia pseudotuberculosis IP 31758] gi|162352054|gb|ABX86002.1| ribonuclease III [Yersinia pestis Angola] gi|165914874|gb|EDR33486.1| ribonuclease III [Yersinia pestis biovar Orientalis str. IP275] gi|165922764|gb|EDR39915.1| ribonuclease III [Yersinia pestis biovar Orientalis str. F1991016] gi|165992740|gb|EDR45041.1| ribonuclease III [Yersinia pestis biovar Antiqua str. E1979001] gi|166206463|gb|EDR50943.1| ribonuclease III [Yersinia pestis biovar Antiqua str. B42003004] gi|166960900|gb|EDR56921.1| ribonuclease III [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051553|gb|EDR62961.1| ribonuclease III [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057357|gb|EDR67103.1| ribonuclease III [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681548|gb|EEO77642.1| RNase III [Yersinia pestis Nepal516] gi|229688393|gb|EEO80464.1| RNase III [Yersinia pestis biovar Orientalis str. India 195] gi|229694647|gb|EEO84694.1| RNase III [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701329|gb|EEO89357.1| RNase III [Yersinia pestis Pestoides A] gi|270338312|gb|EFA49089.1| ribonuclease III [Yersinia pestis KIM D27] gi|320016075|gb|ADV99646.1| RNase III [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 226 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKH---NERLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIHTIERLILEWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRK 210 >gi|285019301|ref|YP_003377012.1| ribonuclease III protein [Xanthomonas albilineans GPE PC73] gi|283474519|emb|CBA17020.1| probable ribonuclease III protein [Xanthomonas albilineans] Length = 227 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 78/216 (36%), Positives = 115/216 (53%), Gaps = 6/216 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 RIG+ F LL +ALTH S + ERLEFLGD I+ LLI+ L+ + A EG Sbjct: 11 DRIGHRFTEPQLLAQALTHRSAGAPH---NERLEFLGDSIVNLLIAEALYQRWPKADEGA 67 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ LV + + + R+L+L + + K SI AD VE+++AA+YLD Sbjct: 68 LTRARAELVREASLAAIGRQLELGDRLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDA 127 Query: 131 GIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G E + +++ AL GK +DAKT LQEW A+ P Y++ +G +H R Sbjct: 128 GFETCRATILPWFESGLAALPVGKPEKDAKTRLQEWLQARQRALPAYELISETGDEHAKR 187 Query: 189 FTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V ++ + A+G S+R AEQ AAA V+++ Sbjct: 188 FRVRCALTEPVLVAEGEGTSRRLAEQQAAAAVIEQL 223 >gi|189425004|ref|YP_001952181.1| ribonuclease III [Geobacter lovleyi SZ] gi|189421263|gb|ACD95661.1| Ribonuclease III [Geobacter lovleyi SZ] Length = 228 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 69/205 (33%), Positives = 108/205 (52%), Gaps = 7/205 (3%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAK 67 +G++F N+ LL++ALTH S + ++ Y+RLEFLGD +LG L++ LL HF + Sbjct: 8 ILGHSFINQRLLQQALTHPSYLNEARQEGAADYQRLEFLGDAVLGFLLADLLCQHFPALP 67 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS +SLV +++A + + I + ++ SI ADV E+L+ A++ Sbjct: 68 EGDLSRLRSSLVDQPRLARLAVDAGIPPLILMGKGAEREGGRTNPSILADVFEALLGAIH 127 Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D G V + A+ +G DAK+ELQE A+ P Y + + GPD Sbjct: 128 CDAGFAAVQQVVKHIYAPLVNAIAAGTPAHHDAKSELQELLAARKQAAPVYNLVDQQGPD 187 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209 HD F + V + G+ QG SK+ Sbjct: 188 HDRLFCIEVSVDGMPLGQGQGRSKK 212 >gi|313897603|ref|ZP_07831145.1| ribonuclease III [Clostridium sp. HGF2] gi|312957555|gb|EFR39181.1| ribonuclease III [Clostridium sp. HGF2] Length = 227 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 63/215 (29%), Positives = 108/215 (50%), Gaps = 6/215 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 A++++ L+ +AL HSS + ++ ERLEF+GD +L L + LF EG+ Sbjct: 12 NIAYSDKKLITQALVHSSYVNEHKSYAHDNERLEFMGDAVLQLWTTKKLFLLEPELSEGQ 71 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 ++ LV E ++ R+L L ++ + K SI AD+ E+L+ A++LD Sbjct: 72 MTTLRAQLVCEEALAEYNRQLGLGKYLMLGVGEEKTGGRQRDSILADMFEALLGAVFLDQ 131 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G+E + + A+ K + D KT+LQE+ + T Y+ SGP + P Sbjct: 132 GMEAIDSILSAVVTP-AISRPKSEKVIDYKTKLQEYIQSDSRKTVHYETVNVSGPSNKPE 190 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V+V + + +G SK+ AEQ+AA + ++ Sbjct: 191 FEVIVMLDDINLGRGKGFSKKRAEQMAAKDAFEKM 225 >gi|268680594|ref|YP_003305025.1| ribonuclease III [Sulfurospirillum deleyianum DSM 6946] gi|268618625|gb|ACZ12990.1| ribonuclease III [Sulfurospirillum deleyianum DSM 6946] Length = 227 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 80/219 (36%), Positives = 117/219 (53%), Gaps = 4/219 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L+KR+GY F N++L+ +ALTH S Y + ERLEFLGD +L L++ L+ F Sbjct: 4 KLEALQKRLGYQFKNQNLIIEALTHKSSKQPY--NNERLEFLGDAVLDLIVGEYLYKEFL 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGELS SLV+ ++ ++AR L L I +S + S+ ++ E++I Sbjct: 62 GVAEGELSKLRASLVNEKSFEKLARLLHLGESIYISLAEENNNGREKPSLLSNAFEAIIG 121 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYL+ G+E A T ++ + RD KT LQE A FGVTPEY++ G Sbjct: 122 ALYLEAGLEKARTLAISLLEEAYPKIDMDAIFRDHKTTLQELTQAHFGVTPEYRLVRSFG 181 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 PDH F + V + G + SK+ A+Q AA L+ Sbjct: 182 PDHQKEFEIAVSVRGSDLSLASGKSKKEAQQKAALLALE 220 >gi|154148336|ref|YP_001407136.1| ribonuclease III [Campylobacter hominis ATCC BAA-381] gi|153804345|gb|ABS51352.1| ribonuclease III [Campylobacter hominis ATCC BAA-381] Length = 223 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 70/208 (33%), Positives = 111/208 (53%), Gaps = 3/208 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +EK +GY F N + L+ ALTH S ++ ERLEFLGD ++ L+++ L+ F Sbjct: 2 HEIEKILGYKFKNENHLKLALTHKSF--KGAQNNERLEFLGDAVMDLIVAEYLYEKFRHT 59 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS +LV+ ++ ++ AR+L + + +S + SI +D E++ A+ Sbjct: 60 QEGDLSKLRAALVNEKSFAKFARKLKIGENLFLSLGEEHNGGRKKDSILSDAFEAIFGAI 119 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YL+ G+EV + K ++ + K +D KTELQE A F +TP YK+ +GPDH Sbjct: 120 YLESGLEVCKSLSIKILEEIFPQIDKSLYKDFKTELQEITQANFALTPTYKLLSATGPDH 179 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 F + V A SK+ AEQ Sbjct: 180 KKEFEMAVFFDDKKIAAAKGKSKKEAEQ 207 >gi|146296620|ref|YP_001180391.1| ribonuclease III [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410196|gb|ABP67200.1| RNAse III [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 224 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 125/221 (56%), Gaps = 3/221 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +EK++GY F N +LL+ ALTH S +H + YERLEFLGD +L L++S LF HF Sbjct: 2 TDIEKKLGYRFKNPNLLKLALTHKSATHDDKSCYERLEFLGDAVLELVVSKYLFEHFPQL 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ ++V +ET S+VA L+L +I + +K+ SI +DV+E++ + Sbjct: 62 SEGELTNLRATIVCSETLSKVAETLNLKRYIVFGKNEKKEGFEGNKSIWSDVLEAIFGGI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +L+ G ++A V + K+ GK D KT+LQE+ + V +Y + + + D Sbjct: 122 FLESGFDMAEKIVINLLEPFIKKAAEGKLFYDYKTKLQEFIQREKNVKIKY-IDYENFED 180 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + RF + I ++G SK+ A+Q AA LK+ G+ Sbjct: 181 NLSRFKSELYIGKNKISEGYGNSKKEAQQEAALNALKKLGV 221 >gi|110678686|ref|YP_681693.1| ribonuclease III [Roseobacter denitrificans OCh 114] gi|123362135|sp|Q16AI6|RNC_ROSDO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|109454802|gb|ABG31007.1| ribonuclease III [Roseobacter denitrificans OCh 114] Length = 228 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 121/207 (58%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + +KR+G+ F +LL +A+TH+S+S + + +R+EFLGDR+LGL+++ L Sbjct: 4 SAELKSFQKRLGHQFNQPALLAQAVTHASMSTANRGDNQRMEFLGDRVLGLVMAEALLRL 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 ++A EG+L+ RFN+LV ETC+ VARE+DL + +R+ ++ D +E++ Sbjct: 64 DNNATEGQLAPRFNALVRKETCADVAREIDLGAVLRLGRSEMLSGGRRKQALLGDAIEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+Y D G + A + + W R + + RD KT LQEWA A+ P Y+ R G Sbjct: 124 IAAVYQDAGFDAARALILRLWGDRVHEVEEDARDPKTALQEWAQARGLQPPRYEEVSRKG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDH P FT+ V IS Q SKR Sbjct: 184 PDHAPIFTISVRISTGETDQATAGSKR 210 >gi|317154737|ref|YP_004122785.1| ribonuclease III [Desulfovibrio aespoeensis Aspo-2] gi|316944988|gb|ADU64039.1| ribonuclease III [Desulfovibrio aespoeensis Aspo-2] Length = 230 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 112/226 (49%), Gaps = 4/226 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFN 61 + L++RI + F L+E ALTHSS ++ + ERLEFLGD +L L IS + Sbjct: 1 MDTGDLQQRIHHRFGQVKLMEAALTHSSHANEQEGDGDNERLEFLGDAVLELCISEEGYR 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A EG+L+ + LV ++ + +AR LDL I + ++ AD E+ Sbjct: 61 RFPHAPEGQLTRIRSQLVKEKSLAAIARSLDLHRHILLGKGEELQGGRDRDALLADAFEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A++LDGG A + + + ++ +D K+ LQE A +F P Y + Sbjct: 121 LMGAVFLDGGFAAARKSILHIFGDKWPEAEMLPETKDYKSRLQEVAQERFRDRPVYVLAG 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 SGP+H+ F V + A +G+ S + AEQ AA L+ + Sbjct: 181 TSGPEHEKVFMVDATLPTGACFRGVSSSVKRAEQEAARLGLRALNV 226 >gi|114797101|ref|YP_759604.1| ribonuclease III [Hyphomonas neptunium ATCC 15444] gi|114737275|gb|ABI75400.1| ribonuclease III [Hyphomonas neptunium ATCC 15444] Length = 234 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 120/225 (53%), Gaps = 5/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLIS 56 + ++ IG+ F + ++LE+ALTH S + + S +RLEFLGDR+L L+I+ Sbjct: 5 LPPEALKEAQEIIGFKFKDAAILERALTHPSAIPPSGDTVKLSNQRLEFLGDRVLNLIIA 64 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L S EG+L+ R N LV C++ R L L FI +S S Sbjct: 65 ERLIERRQSDSEGDLAPRLNRLVKKGACAEAMRFLGLQRFILLSESEVAAGGHDRESTLG 124 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D E++IAA+Y +GG+ A F+++ W + +D KT LQEWA + P+Y Sbjct: 125 DACEAVIAAIYQEGGLAAARKFIERAWAPQFENVPAETKDPKTLLQEWAQGQGHPLPDYV 184 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 VT RSGPDH P++ V V ++ + A SKR AE+ AAA +L+ Sbjct: 185 VTGRSGPDHAPQYEVEVRLA-VGKATATGPSKREAERHAAALMLR 228 >gi|206901475|ref|YP_002250663.1| ribonuclease III [Dictyoglomus thermophilum H-6-12] gi|206740578|gb|ACI19636.1| ribonuclease III [Dictyoglomus thermophilum H-6-12] Length = 237 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 5/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62 S ++++ G +F N++L+ +ALTH S H +RLEFLGD +L ++I+ +LF Sbjct: 17 LSKVKEKTGISFDNKNLIIEALTHPSFKHENPHFEYDNQRLEFLGDAVLNMIITEILFQR 76 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + A EG L+ + +V ET + A+ L+L I + K SI +D+ E+ Sbjct: 77 YKEASEGILTQKRIYMVKEETLYKKAKSLNLGDLILLGKGEEKQGGREKISILSDLFEAF 136 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I ALYLD G E FV++ +++ ++S + D K LQ + P Y VT G Sbjct: 137 IGALYLDKGYEFTKNFVERIFREE-IESVEMEIDWKNLLQSQLMKEGKK-PSYIVTREEG 194 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P+H+ F V + I A+G +KR AE AA L++ Sbjct: 195 PEHNKIFYVELWIDNNKIAEGEGKTKREAEIKAAKIALEKM 235 >gi|171909524|ref|ZP_02924994.1| putative Ribonuclease III [Verrucomicrobium spinosum DSM 4136] Length = 238 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 5/208 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFD 64 +LE RI Y F LL++ALTH S+ + + +RLE+LGD +L L++S +++ F Sbjct: 3 SLESRIAYQFKQPELLQEALTHPSLPYESKNPQRHNQRLEYLGDAVLQLVLSEAIYHQFP 62 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ LV T + +AR+L L + + + S ADV+ES+I Sbjct: 63 LDDEGLLTKLRTRLVQTRTLAHIARQLCLGRDLLLGKGEESNGGRSRESTLADVMESIIG 122 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLDGGIE FV ++W AL+ + K +LQE + G TP Y++ G Sbjct: 123 AVYLDGGIEAVRPFVLQHWSHDLAALQHSPVELNPKGQLQELLQGEGGNTPTYRIIAAEG 182 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRA 210 PDH F VV A G SK+ Sbjct: 183 PDHQKVFQAVVVWQDRDLAAGTGRSKKE 210 >gi|307610570|emb|CBX00158.1| hypothetical protein LPW_19031 [Legionella pneumophila 130b] Length = 206 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 111/206 (53%), Gaps = 6/206 (2%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 + L++ALTH S ++YER EFLGD IL +I+ LFN F EG+LS + LV Sbjct: 2 AYLKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFNRFPLHSEGQLSRLRSFLVK 58 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 E +++ARE+ L ++ + + TSI AD +E+++AA+YLDGG+ A + Sbjct: 59 GEMLAEIAREIGLGDYLFLGQGELRSGGFRRTSILADALEAILAAIYLDGGMTAAKQIIL 118 Query: 141 KYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + R +DAKT+LQE+ A PEY +T G +H F V I G+ Sbjct: 119 MLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKVEGDEHAQIFHVTCTIEGV 178 Query: 199 -APAQGMDCSKRAAEQVAAAEVLKRE 223 A G ++R AEQ+AA +L++ Sbjct: 179 SQVAYGTGPNRRKAEQLAAKAMLEQL 204 >gi|88856701|ref|ZP_01131356.1| ribonuclease III [marine actinobacterium PHSC20C1] gi|88813998|gb|EAR23865.1| ribonuclease III [marine actinobacterium PHSC20C1] Length = 233 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 107/221 (48%), Gaps = 6/221 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLF 60 + + L +G N +L ALTH S ++ + ERLEFLGD ILG ++ L+ Sbjct: 6 SSSQAELSAVLGVEI-NPDVLTLALTHRSFAYENGGIANNERLEFLGDSILGQAVTVKLY 64 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+L+ R SLVS+ +++AR + L ++IR+ + SI AD VE Sbjct: 65 RDNPELDEGDLAKRRASLVSSVALAEIARLIGLGAYIRLGKGEEQTGGREKPSILADTVE 124 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 ++I A YLD G + A V + +F D KT LQE A P+Y++ Sbjct: 125 AIIGAAYLDLGGDAATALVLRLVAPLLADPERFGAAMDPKTSLQELAAQLGRGVPDYRIE 184 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 SGPDH RF + +S A G SK+ AE AA E Sbjct: 185 D-SGPDHSKRFHASLVLSNDVIATGTGSSKKQAEMAAALEA 224 >gi|149173983|ref|ZP_01852611.1| ribonuclease III [Planctomyces maris DSM 8797] gi|148846963|gb|EDL61298.1| ribonuclease III [Planctomyces maris DSM 8797] Length = 247 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 79/218 (36%), Positives = 118/218 (54%), Gaps = 3/218 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ +GY F + LL+ LTH+S + + +S ERLEFLGD ILG ++ LF+ F + Sbjct: 14 LEECQQNLGYRFVDCELLKSCLTHTSAAKTRMDSNERLEFLGDAILGSIVCEKLFDQFPN 73 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EGEL+ +++VS TC+++ARE L FI V L + S+ A + E+LIA Sbjct: 74 APEGELTRIKSAVVSRNTCTRLAREKGLDRFIFVGKGLAMTE-NLPESLLAGMFEALIAG 132 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGGI F+D ++ K+ + + K+ LQ+++ KF TP Y+V GP Sbjct: 133 IYLDGGIAPVHQFLDPLIERENSKASRSVHGYNYKSLLQQYSQKKFSQTPIYEVLDEKGP 192 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 DH F V I +K+ AEQ AA L+ Sbjct: 193 DHSKFFKVTAIIGEHKYEPAWGSTKKEAEQRAAYNALR 230 >gi|259507587|ref|ZP_05750487.1| ribonuclease III [Corynebacterium efficiens YS-314] gi|90101620|sp|Q8FP16|RNC_COREF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|259164766|gb|EEW49320.1| ribonuclease III [Corynebacterium efficiens YS-314] Length = 247 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 6/226 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 A+ ++ L +R+G +R LL ALTH S ++ + ERLEFLGD +LGL ++ L Sbjct: 19 DAVNHADLLERLGVDI-DRDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLAVANRL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S+ E ++S S+VS + +ARE++L FI + SI AD Sbjct: 78 YELYPSSPESDISKMRASIVSRYGLADIAREINLGEFILLGKGELLTEGRSKDSILADTT 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+L+ A++ G EVA V + + + +D KT LQE + EY+ Sbjct: 138 EALLGAIFRQHGYEVARDVVLTLFHHKINHASAKGIHQDWKTTLQEELAQRKKPMVEYQT 197 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T GPDHD FT VV + + +G +K+ AEQ AA + + Sbjct: 198 TSV-GPDHDLLFTAVVYLGDVEMGRGEGPNKKLAEQEAARQAFLKL 242 >gi|118580198|ref|YP_901448.1| ribonuclease III [Pelobacter propionicus DSM 2379] gi|118502908|gb|ABK99390.1| RNAse III [Pelobacter propionicus DSM 2379] Length = 234 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 74/212 (34%), Positives = 114/212 (53%), Gaps = 4/212 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLF 60 A + LE+ I Y F +++ L +ALTH S H +Y+RLEFLGD +LG++++ +LF Sbjct: 2 ASDLAELEREIAYRFIDQAPLLQALTHPSFEHEQAGGGNYQRLEFLGDAVLGMVLAEMLF 61 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + EG LS + + +T + +AR L F+R+ + SI ADV+E Sbjct: 62 RRFPDSNEGVLSRLRSQIADQDTLAGIARSFGLGRFVRLGRGEEQGAGRNKDSILADVLE 121 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 +LIAA+YLDGG++ + + + + G R DAK+ELQE A+ +P Y++T Sbjct: 122 ALIAAVYLDGGLKESRRLIQRLFVAILESRGARLRFNDAKSELQELLSARRLPSPVYRLT 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 SGP HD F V + +G SK+ Sbjct: 182 GESGPPHDRLFIFQVLVDDAVVGEGEGRSKKI 213 >gi|148270763|ref|YP_001245223.1| ribonuclease III [Thermotoga petrophila RKU-1] gi|189043372|sp|A5IN74|RNC_THEP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|147736307|gb|ABQ47647.1| RNAse III [Thermotoga petrophila RKU-1] Length = 240 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 9/227 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58 +K+ G F N LL +AL HSS ++ ES E+LEFLGD +L L + + Sbjct: 9 VEEFQKKTGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEI 68 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + A+ G+L+ ++ S E + V+REL+L F+ + K SI AD Sbjct: 69 LYKKYPEAEVGDLARAKSAAASEEVLAMVSRELNLGKFLFLGKGEEKTGGRDRDSILADA 128 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E+L+AA+YLD G ++ ++ + G+ D KT LQE ++ V PEY Sbjct: 129 FEALLAAIYLDQGYHKIKELFEEEFELYIEKIMRGEMLFDYKTALQEIVQSEHKVPPEYV 188 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + D D F V V + G + A G +K+ AE+ AA ++ Sbjct: 189 LVRTEKNDGDRIFVVEVRVDGKSIAMGRGRTKKEAEKEAARIAYEKL 235 >gi|222100439|ref|YP_002535007.1| Ribonuclease 3 [Thermotoga neapolitana DSM 4359] gi|254807907|sp|B9K9K8|RNC_THENN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|221572829|gb|ACM23641.1| Ribonuclease 3 [Thermotoga neapolitana DSM 4359] Length = 240 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 112/227 (49%), Gaps = 9/227 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58 L+KR+G F + LL +AL HSS ++ + ES E+LEFLGD +L L + + Sbjct: 9 VEELQKRLGVLFNDEELLFRALCHSSYANEQKQAGREDVESNEKLEFLGDAVLELFVCEI 68 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + A+ G+L+ +++ S E ++V+R L+L ++ + K SI AD Sbjct: 69 LYRKYPEAEVGDLARVKSAVASEEVLARVSRRLELGKYLFLGKGEEKTGGRERDSILADA 128 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E+L+AALYLD G + + ++ + G+ D KT LQE + PEY Sbjct: 129 FEALLAALYLDQGYQKIKDLFEDEFESYIEKIMKGEILFDYKTALQEIVQREHKTPPEYV 188 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + F V V ++ A G +K+ AE+ AA + ++ Sbjct: 189 LVRTEKNGSEKLFVVEVRVNDETLAVGRGRTKKEAEKDAARKAYEKL 235 >gi|187477630|ref|YP_785654.1| ribonuclease III [Bordetella avium 197N] gi|123514189|sp|Q2KWY0|RNC_BORA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|115422216|emb|CAJ48740.1| ribonuclease III [Bordetella avium 197N] Length = 251 Score = 234 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 70/213 (32%), Positives = 109/213 (51%), Gaps = 6/213 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +TLE R+G+ F +++LLE+ALTH S ERLEFLGD +L +++ +LF + Sbjct: 1 MSLATLETRLGHHFGDQALLEQALTHRS---HGARHNERLEFLGDSVLNFVVAAMLFERY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + + +A+ L+L+ ++R+ K SI AD VE+L Sbjct: 58 AKLDEGDLSRVRANLVKQASLADIAQRLELSPYLRLGEGEMKSGGFRRPSILADAVEALF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G + A +++ + + +DAKT LQE+ + P Y V Sbjct: 118 GAVFLDAGFDAARKVIEQQYVPVLANVDPETLGKDAKTLLQEFLQGRKLALPLYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213 G H +F V I L S+RAAEQ Sbjct: 178 GAAHSQQFEVECAIPALEIKVTAAGASRRAAEQ 210 >gi|120609884|ref|YP_969562.1| ribonuclease III [Acidovorax citrulli AAC00-1] gi|120588348|gb|ABM31788.1| RNAse III [Acidovorax citrulli AAC00-1] Length = 228 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 75/216 (34%), Positives = 109/216 (50%), Gaps = 6/216 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + S L+ R+ + F++ SLL++A TH S S + ERLEFLGD +L L +S+LL+ Sbjct: 1 MVSPSLSALQDRLQHVFSDPSLLQRATTHRSFS---ADHNERLEFLGDSVLNLAVSSLLY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+LS +LV E +A L L +R+ K SI AD +E Sbjct: 58 QRLRDLPEGDLSRVRANLVRQEALHSLALGLQLPQVLRLGEGETKSGGKQRPSILADALE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD G + A V + ++ + +DAKT LQEW + P+Y+V Sbjct: 118 ALIGAVYLDAGYQCAEALVHRLYQDVEINPRMPAAEKDAKTALQEWLQGRKMKLPQYRVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 G H F V +I L + G+ S+RA EQ Sbjct: 178 ATVGAAHRQTFDVECDIPELGLTERGIGGSRRAGEQ 213 >gi|311742943|ref|ZP_07716751.1| ribonuclease III [Aeromicrobium marinum DSM 15272] gi|311313623|gb|EFQ83532.1| ribonuclease III [Aeromicrobium marinum DSM 15272] Length = 232 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 101/218 (46%), Gaps = 5/218 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65 L +G + LL ALTH S ++ + ERLEFLGD +LGL+++ LF Sbjct: 3 ALRDVLGVPDLDPELLRHALTHRSYAYENGQIPNNERLEFLGDSVLGLVVTDSLFRAHPD 62 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ ++VSA+ + VAR L + +R+ SI +D VE++I A Sbjct: 63 LPEGQLAKLRAAVVSAKALAVVARTLGIGDVVRLGRGEETTGGRDKASILSDTVEAVIGA 122 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ++L GIE A V + + + D KT LQE A P Y + +GP Sbjct: 123 VFLQFGIERAAEVVHRVFDPVMADAASLGAALDWKTSLQEMAAHHGLGVPRYHLEG-TGP 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 DH FT V + A G SK+ AEQ A + Sbjct: 182 DHARSFTAEVHLGERVFAGGAGRSKKEAEQEVAEIAWR 219 >gi|309776509|ref|ZP_07671491.1| ribonuclease III [Erysipelotrichaceae bacterium 3_1_53] gi|308915737|gb|EFP61495.1| ribonuclease III [Erysipelotrichaceae bacterium 3_1_53] Length = 227 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIST 57 M + + L+ R A+++++L+ +AL HSS + ++ ERLEF+GD +L L + Sbjct: 1 MDTI-FEWLKDR-NIAYSDKTLITQALVHSSYVNEHKSYAHDNERLEFMGDAVLQLWTTK 58 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF EG+++ LV E ++ R+L L ++ + K SI AD Sbjct: 59 KLFLLEPELSEGQMTTLRAQLVCEEALAEYNRQLGLGKYLMLGVGEEKTGGRQRDSILAD 118 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEY 175 + E+L+ A++LD G+ A + A+ K + D KT+LQE+ + T Y Sbjct: 119 MFEALLGAVFLDQGM-AAIDIILSAVVTPAISRPKSEKVIDYKTKLQEYIQSDSRKTVHY 177 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + SGP + P F V+V + + +G SK+ AEQ+AA + ++ Sbjct: 178 ETVNVSGPSNKPEFEVIVMLDDINLGRGKGFSKKRAEQMAAKDAFEKM 225 >gi|260886608|ref|ZP_05897871.1| ribonuclease III [Selenomonas sputigena ATCC 35185] gi|330839558|ref|YP_004414138.1| ribonuclease III [Selenomonas sputigena ATCC 35185] gi|260863751|gb|EEX78251.1| ribonuclease III [Selenomonas sputigena ATCC 35185] gi|329747322|gb|AEC00679.1| ribonuclease III [Selenomonas sputigena ATCC 35185] Length = 242 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 109/222 (49%), Gaps = 6/222 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63 L +G F N LL +ALTH+S ++ + ERLEFLGD +L L ST LF F Sbjct: 18 ELSDHLGIEFQNIVLLHEALTHTSYANEAKNKGVVHNERLEFLGDAVLELATSTYLFERF 77 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EGEL+ S+V T S+ A EL+L ++ + S+ AD E++I Sbjct: 78 PNRPEGELTKARASIVREATLSRRAAELELGEYLLLGHGEASMGGGHRPSMLADAFEAVI 137 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G + A +V K + SG+ +D KT LQE Y++ + Sbjct: 138 GAIYLDRGWQTAYDYVLKQLHDELLTIDSGENMKDYKTTLQEVVQKHVDSKIAYELLTET 197 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V I+ G +K+ AEQ AA E L++ Sbjct: 198 GPDHDKTFEFAVRINDAVYGTGKGRNKKEAEQGAAREALRKM 239 >gi|238021755|ref|ZP_04602181.1| hypothetical protein GCWU000324_01658 [Kingella oralis ATCC 51147] gi|237866369|gb|EEP67411.1| hypothetical protein GCWU000324_01658 [Kingella oralis ATCC 51147] Length = 239 Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats. Identities = 71/218 (32%), Positives = 115/218 (52%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + L+K++GY F N +LL++ALTH S + ++ ERLEF+GD IL I+ +L++ F Sbjct: 11 LAHLQKQLGYTFKNPALLQQALTHRSY---HAQNNERLEFIGDSILDYAIAKMLYHAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG LS LV T +++AREL + + + + + K + SI AD VE+L+AA Sbjct: 68 LPEGRLSPLRAQLVKEATLAEIARELHIGNALYLGTGELKSGGNDRPSILADAVEALLAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + + R L + +D KT+LQE A+ P+Y++ ++G Sbjct: 128 ISFDADFATAEATVQRLFAPRIQQLNTHTQAKDPKTQLQEMLQAQHLPLPKYRIEKQTGE 187 Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220 + F V ++ L S+RAAEQ A + + Sbjct: 188 GNTALFDVSCDLGQLGKITYAQAHSRRAAEQDCAQQAI 225 >gi|300780910|ref|ZP_07090764.1| ribonuclease III [Corynebacterium genitalium ATCC 33030] gi|300532617|gb|EFK53678.1| ribonuclease III [Corynebacterium genitalium ATCC 33030] Length = 252 Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 113/220 (51%), Gaps = 5/220 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 + + +++L +R+G LL+ ALTH S ++ + + ERLEF+GD +LGL I+ L Sbjct: 20 AGIDHASLLERLGVD-VEPDLLKLALTHRSFANEHGTLPNNERLEFVGDAVLGLTIANEL 78 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F+ F S E +LS +VS + VAR +DL + + + SI AD Sbjct: 79 FDRFPSRPESDLSPMRARIVSRYGLADVARSIDLGAHVLLGKGEEATGGRKKDSILADTT 138 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+++ A+Y G +V + + + + +++ + +D KTELQE G P Y T Sbjct: 139 EAVLGAIYRQHGFDVTRDVITRLFDDK-IENAHWIQDWKTELQERVAELGGNPPVYTATA 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GP+H+ FT V I G+ G +K+ AEQ +A E Sbjct: 198 -KGPEHEQIFTAEVAIDGVRRGVGRGQNKKTAEQNSAREA 236 >gi|320528410|ref|ZP_08029572.1| ribonuclease III [Solobacterium moorei F0204] gi|320131324|gb|EFW23892.1| ribonuclease III [Solobacterium moorei F0204] Length = 226 Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 7/222 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63 LE R N ++++A HSS +H ++ ERLEF+GD +L L S ++ Sbjct: 6 IEWLESR-HIKVNNAKMIQQAFIHSSYAHEHKNKNDNERLEFMGDAVLQLWSSNAIYPL- 63 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG ++ LV + + R+L L ++ + S K +I AD+ E+ + Sbjct: 64 -NLSEGHMTRLRAQLVCEKALAIYGRQLHLNDYLLLGSGEEKTGGRNKDAIIADMFEAFL 122 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 AL+LD G++ + + R D KT+LQE+ + T +Y++ + Sbjct: 123 GALFLDQGMDAVDNILSEVITPRLAHPEDVGVIHDYKTKLQEYVQSDSRQTVKYELVSET 182 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP + P F + V + GL G SK+ AEQ AA ++ Sbjct: 183 GPSNAPEFVMNVLVDGLVLGTGSGQSKKQAEQNAARNAFEKM 224 >gi|258652105|ref|YP_003201261.1| ribonuclease III [Nakamurella multipartita DSM 44233] gi|258555330|gb|ACV78272.1| ribonuclease III [Nakamurella multipartita DSM 44233] Length = 249 Score = 234 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 99/199 (49%), Gaps = 5/199 (2%) Query: 20 RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 L+ ALTH S ++ + + ERLEFLGD +LG++++ L+ +EG L+ S Sbjct: 23 PELVVLALTHRSFAYEHGGLPTNERLEFLGDSVLGVVVTETLYRTHPELQEGRLAKLRAS 82 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 +V+ + V R + L +R+ +SI AD VE++I A+YL G+EVA Sbjct: 83 VVNMHALAGVGRTIGLGDQLRLGKGEELTGGRDKSSIVADAVEAVIGAVYLQHGLEVARA 142 Query: 138 FVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 V + + + + D KT LQE A + PEY+V GPDH F V + Sbjct: 143 VVLRLFADLLATAPQLGAGLDWKTSLQELAAERGLGVPEYRV-SEEGPDHAKVFAARVLL 201 Query: 196 SGLAPAQGMDCSKRAAEQV 214 SG A G +K+ AEQ Sbjct: 202 SGSARGTGTGRTKKEAEQN 220 >gi|15639796|ref|NP_219246.1| ribonuclease III (rnc) [Treponema pallidum subsp. pallidum str. Nichols] gi|189026034|ref|YP_001933806.1| ribonuclease III [Treponema pallidum subsp. pallidum SS14] gi|6094109|sp|O83787|RNC_TREPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238689343|sp|B2S448|RNC_TREPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|3323122|gb|AAC65778.1| ribonuclease III (rnc) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018609|gb|ACD71227.1| ribonuclease III [Treponema pallidum subsp. pallidum SS14] gi|291060165|gb|ADD72900.1| ribonuclease III [Treponema pallidum subsp. pallidum str. Chicago] Length = 254 Score = 234 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 110/227 (48%), Gaps = 7/227 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLISTL 58 L++ +G F + + L++AL+H S+ H ER+EFLGD +LG + + Sbjct: 22 ESLRRLQETLGVKFRDPTALDQALSHRSLFSSKEDHCGVRHNERMEFLGDAVLGAVAAAC 81 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + EG+L+ LVS +T S +A L + ++ + +I AD Sbjct: 82 LYRALPDSHEGDLAKTKAVLVSTDTLSDIALSLRIDHYLLLGKGEELSGGRHKKAILADA 141 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E++I AL+LD G + A FV + R ++ D K+ LQ AH ++ PEY Sbjct: 142 TEAVIGALFLDSGFKAAERFVLRLLLPRVRPIREKNLHHDYKSTLQVLAHQRYRSKPEYT 201 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V R+GPDH RF V V + G SK++AEQ AA ++ Sbjct: 202 VVKRTGPDHSVRFWVDVTVGDARFGPGYGTSKKSAEQCAARLAWEQL 248 >gi|157737847|ref|YP_001490531.1| ribonuclease III [Arcobacter butzleri RM4018] gi|315637636|ref|ZP_07892842.1| ribonuclease III [Arcobacter butzleri JV22] gi|189043289|sp|A8EV88|RNC_ARCB4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157699701|gb|ABV67861.1| ribonuclease III [Arcobacter butzleri RM4018] gi|315478090|gb|EFU68817.1| ribonuclease III [Arcobacter butzleri JV22] Length = 224 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 4/207 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS LEK + Y F N++L+ +ALTH S Y + ERLEFLGD +L L++ L+ F Sbjct: 3 DYSKLEKCLDYQFKNKNLIIEALTHKSFKKPY--NNERLEFLGDAVLNLIVGEYLYLKFP 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGELS SLV+ +++A E+ L +I +S+ ++ SI +D E+++ Sbjct: 61 KSNEGELSKIRASLVNETGFTRLANEIKLGEYIFISTAEERNKGRTKASILSDAFEAIMG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL+ G+ + + ++ + D KT LQE A+F PEYK+ G Sbjct: 121 AIYLESGLNTLKPIILRILEESYDKINLDVLFSDYKTALQEITQARFASIPEYKIEGSYG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDH F V + I G + SK+ Sbjct: 181 PDHKKEFEVSIWIDGKNYGKASGKSKK 207 >gi|330721516|gb|EGG99556.1| Ribonuclease III [gamma proteobacterium IMCC2047] Length = 210 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 104/207 (50%), Gaps = 6/207 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + L + +GY F + SLL+ ALTHSS + ERLEFLGD ILG +I+ LF Sbjct: 2 SQDLAKLSQSLGYQFRDESLLQTALTHSSFGQGH---NERLEFLGDSILGWVIADALFKR 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+LS LV T ++VAREL L ++R+ K SI AD E++ Sbjct: 59 FPHAREGQLSRLRAGLVKGVTLAKVARELQLGHYLRLGQGEMKSGGFRRDSILADAFEAI 118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LD I + + R +D KT LQE+ ++ P+Y++ Sbjct: 119 IGAIFLDSDIATCQQIILVLFAGRLDAQTLDDTLKDPKTRLQEFLQSRKQPLPDYRILST 178 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDC 206 SG DH+ F V E+ + P + Sbjct: 179 SGKDHEQVFRVACEVESIAEPFEAEGT 205 >gi|229061452|ref|ZP_04198797.1| Ribonuclease 3 [Bacillus cereus AH603] gi|228717875|gb|EEL69523.1| Ribonuclease 3 [Bacillus cereus AH603] Length = 245 Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A E+ S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E ++ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGYLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNEALGLGSGKSKK 227 >gi|85708367|ref|ZP_01039433.1| ribonuclease III [Erythrobacter sp. NAP1] gi|85689901|gb|EAQ29904.1| ribonuclease III [Erythrobacter sp. NAP1] Length = 232 Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats. Identities = 86/218 (39%), Positives = 128/218 (58%), Gaps = 6/218 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSY------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 IG+ + S+ +ALTH S + ++ + Y+RLEFLGDR+LGL +++ LF D + Sbjct: 15 IGFEVKDGSMWLEALTHGSFNSTHTATGQPEADYQRLEFLGDRVLGLSVASWLFRSSDRS 74 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 KEG+LS R N+LVS TC+++AR + L+ IR+ R+D S +I DV+E++I A Sbjct: 75 KEGQLSQRLNALVSGATCARIARTIGLSDHIRLGKQAREDGGSDSDNILGDVMEAIIGAS 134 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +LD G + + + W+ + K+ LQEWA P+Y V RSGPDH Sbjct: 135 FLDNGFDTTRAIILELWEPELAGDAGKAKHPKSALQEWAAGNRRAMPQYDVIDRSGPDHA 194 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 RFTV V I + A+G+ SK AE++AAAE L++ G Sbjct: 195 ARFTVRVSIHKVGEAEGVATSKHEAEKLAAAEFLEKYG 232 >gi|322378529|ref|ZP_08052977.1| ribonuclease III [Helicobacter suis HS1] gi|321149043|gb|EFX43495.1| ribonuclease III [Helicobacter suis HS1] Length = 216 Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats. Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 4/212 (1%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 GY F + LL++ALTH S ++ ERLEFLGD +L L+++ +LF F +EG+LS Sbjct: 2 GYVFKDPLLLQQALTHRST--KAHKNNERLEFLGDAVLDLVVAEILFTRFTDLQEGDLSK 59 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 SLV+ + ++A L+L I +S + SI + E+L+ A+YL+ G+E Sbjct: 60 MRASLVNEKAFFKLALSLNLQDHILISQAEANNNGHTKPSILSSAFEALMGAIYLESGLE 119 Query: 134 VAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 + + L D K+ LQE A+F P Y + SGPDH +F + Sbjct: 120 IIKNLIQDLLDMAYPNLSPKTLFMDYKSALQELTQARFKAIPIYALKSESGPDHAKQFEM 179 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + I SK+ AEQ+ A K+ Sbjct: 180 QIFILNKLYGTCKAGSKKQAEQLCAQVAYKQL 211 >gi|312879974|ref|ZP_07739774.1| ribonuclease III [Aminomonas paucivorans DSM 12260] gi|310783265|gb|EFQ23663.1| ribonuclease III [Aminomonas paucivorans DSM 12260] Length = 232 Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats. Identities = 64/213 (30%), Positives = 105/213 (49%), Gaps = 7/213 (3%) Query: 11 KRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 + + Y F + LL +ALTH+S ++ ERLEFLGD +L L +S L+ A+E Sbjct: 13 RALRYRFHRQELLTEALTHASFANESGLSRCNERLEFLGDAVLELCVSERLYRERPDAEE 72 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ ++LV A ++ R + + + + R+ ++ AD E+++ A+YL Sbjct: 73 GDLTRWRSALVCAPNLARWGRLWGIPACLLLGKGFRRGGP--NENMVADAFEAVLGAIYL 130 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG++ + L+ G +D K+ LQE + P Y++ +SGP H+ Sbjct: 131 DGGLDAVREVLHPLPLPEVLEEG---KDPKSRLQEVLQGQGHPCPRYELREQSGPPHERW 187 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V V A G S R AE+ AA L+ Sbjct: 188 FVVEVSCGEQVLASGEGRSLREAERCAANRALE 220 >gi|77359683|ref|YP_339258.1| RNase III, ds RNA [Pseudoalteromonas haloplanktis TAC125] gi|76874594|emb|CAI85815.1| RNase III, ds RNA [Pseudoalteromonas haloplanktis TAC125] Length = 200 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 68/197 (34%), Positives = 102/197 (51%), Gaps = 5/197 (2%) Query: 27 LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86 +TH S + ERLEFLGD IL +I+ L+ F A+EG+LS ++LV +T ++ Sbjct: 1 MTHRS---HKGQHNERLEFLGDSILSFVIANALYAKFPKAREGDLSRMRSTLVRGQTLAE 57 Query: 87 VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146 E L ++R+ K S AD VE++I A++LD IE G + ++++R Sbjct: 58 FGLEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIGAVFLDSDIERCGELILSWYEER 117 Query: 147 --ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 A+ G ++D KT LQE A+ P Y V G H+ FTV + G+ + Sbjct: 118 LNAISPGLNQKDPKTLLQEHLQARKLSLPGYTVVDTKGQAHNQTFTVECIVDGMDSIISV 177 Query: 205 DCSKRAAEQVAAAEVLK 221 S+R AEQ AA + LK Sbjct: 178 GSSRRKAEQKAAEKALK 194 >gi|326316027|ref|YP_004233699.1| ribonuclease 3 [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372863|gb|ADX45132.1| Ribonuclease 3 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 228 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 77/216 (35%), Positives = 111/216 (51%), Gaps = 6/216 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + S L+ R+ +AF++ SLL++A+TH S S + ERLEFLGD +L L +S+LL+ Sbjct: 1 MVSPSLSALQDRLQHAFSDPSLLQRAITHRSFS---ADHNERLEFLGDSVLSLAVSSLLY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+LS +LV E +A L L +R+ K SI AD +E Sbjct: 58 QRLRDLPEGDLSRVRANLVRQEALHDLALGLQLPQVLRLGEGETKSGGKQRPSILADALE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD G + A V + +K + +DAKT LQEW + P+Y+V Sbjct: 118 ALIGAVYLDAGYQCAEALVHRLYKDVEINPRMQAAEKDAKTALQEWLQGRKMKLPQYRVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 G H F V +I L + G+ S+RA EQ Sbjct: 178 ATVGAAHRQTFDVECDIPELGLTERGIGGSRRAGEQ 213 >gi|294507352|ref|YP_003571410.1| Ribonuclease III [Salinibacter ruber M8] gi|294343680|emb|CBH24458.1| Ribonuclease III [Salinibacter ruber M8] Length = 243 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 99/223 (44%), Gaps = 6/223 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + +E+ +G + S +ALTH S+ + S ERLEFLGD +L + + +L++ Sbjct: 14 AAIEQLVGRPVDDLSHYRRALTHRSLLRVHPARTFRSNERLEFLGDALLDVFVGEVLYDR 73 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ LVS + AR L L + +S + + SI AD E+ Sbjct: 74 FPEKDEGALTRLRARLVSERPLATYARGLGLGPHLLMSENAAEGDGRDNPSILADAFEAF 133 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD--AKTELQEWAHAKFGVTPEYKVTFR 180 + A+YLD G E A FV RD K++L E A P Y V Sbjct: 134 VGAVYLDLGHEAARGFVQDRVLAPVDLEDVATRDDNYKSQLLEHLQALGRPQPTYHVVEE 193 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP HD FTV V + +G SK+ AEQ AA L Sbjct: 194 KGPSHDKTFTVEVRVGDADYERGTAGSKQDAEQQAARRTLDEM 236 >gi|325290420|ref|YP_004266601.1| RNAse III [Syntrophobotulus glycolicus DSM 8271] gi|324965821|gb|ADY56600.1| RNAse III [Syntrophobotulus glycolicus DSM 8271] Length = 259 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNH 62 + ++G LL ALTH S + +E+ +RLEFLGD +L +I L+ Sbjct: 34 TAFITKLGLENPENQLLYTALTHPSYTFENPASGRENNQRLEFLGDAVLDFVIGEYLYLK 93 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EGEL+ ++V+ T ++ AR + + + + + SI AD +E++ Sbjct: 94 YRDKPEGELTKMRAAVVNESTLARQARGIGIGQALFLGKGEQYSGGRERASILADALEAV 153 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRS 181 I A+YL G E +F+ K K D KT LQE A + + Y++ Sbjct: 154 IGAVYLQYGFEEVRSFILKMLVPEIEAIDKGNYGDFKTILQERAQKE-DMEVSYRIIDEQ 212 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDH+ FT V + +G +K+ AEQ AA L+ Sbjct: 213 GPDHNKLFTAGVYVQNNFYGKGTGKTKKEAEQHAARLALE 252 >gi|148272538|ref|YP_001222099.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830468|emb|CAN01403.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 238 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 76/208 (36%), Positives = 99/208 (47%), Gaps = 5/208 (2%) Query: 20 RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 LLE ALTH S ++ + ERLEFLGD ILG ++ +L+ EGEL+ R S Sbjct: 26 PELLELALTHRSYAYEHGGIPHNERLEFLGDSILGQAVTVMLYLENPDLDEGELAKRRAS 85 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 LVS+ ++VA + L + + +SI AD VE++I A YLD G E A Sbjct: 86 LVSSVALAEVATRIGLGEHLLLGRGEELTGGRAKSSILADTVEAIIGASYLDAGGEAATG 145 Query: 138 FVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 V + +F D KT LQE A + P Y V+ SGPDH RF VV + Sbjct: 146 LVLRLIAPLLEDPARFGAAMDPKTALQESAARQGLPAPVYDVSD-SGPDHSKRFHAVVTV 204 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G SK+ AE AA E R Sbjct: 205 GDAVRTTGEGSSKKQAEMTAALEAWTRL 232 >gi|92117774|ref|YP_577503.1| ribonuclease III [Nitrobacter hamburgensis X14] gi|91800668|gb|ABE63043.1| RNAse III [Nitrobacter hamburgensis X14] Length = 266 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 88/203 (43%), Positives = 121/203 (59%), Gaps = 3/203 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +E+R+G+ FA+ SLL A TH S S +SY+RLEFLGD +LGL++S +L+ F Sbjct: 44 AAIEQRLGHKFADMSLLTTAFTHVSALKSSRGRSDSYQRLEFLGDHVLGLVVSDMLYRAF 103 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS R LV ETC VA+ LDL I++ + S+ D+ E++I Sbjct: 104 PKADEGELSKRLAELVRKETCIDVAKSLDLQDGIKLGAVGAGAGARLRRSVLGDICEAVI 163 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG A FV++ W +R K + RD KT LQEWA + TP Y+ R+GP Sbjct: 164 GAVYLDGGYAAAAAFVERNWLERMRKPVRPLRDPKTVLQEWAQGQGLPTPVYREVERTGP 223 Query: 184 DHDPRFTVVVEISGLAPAQGMDC 206 HDPRF V VE+ GL ++G+ Sbjct: 224 HHDPRFRVAVELPGLEASEGIGG 246 >gi|91775216|ref|YP_544972.1| ribonuclease III [Methylobacillus flagellatus KT] gi|91775360|ref|YP_545116.1| ribonuclease III [Methylobacillus flagellatus KT] gi|91709203|gb|ABE49131.1| RNAse III [Methylobacillus flagellatus KT] gi|91709347|gb|ABE49275.1| RNAse III [Methylobacillus flagellatus KT] Length = 248 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 70/209 (33%), Positives = 104/209 (49%), Gaps = 6/209 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 L ++L +++ Y F ++ LL ALTH S S + ERLEFLGD +L L++ LF F Sbjct: 23 LSQNSLVRQLAYEFKDKGLLTLALTHRSYS---GSNNERLEFLGDGVLNFLVAHQLFLRF 79 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS LV +T S++A EL + F+R+ K S+ AD +E++I Sbjct: 80 PKLPEGDLSRLRAQLVKEQTLSEIATELSVGEFLRLGEGELKSGGWRRPSVLADAMEAII 139 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG A V + + R + +DAK+ LQE+ + PEY V Sbjct: 140 GAVFLDGGYPAAEALVKRLFLPRMEGIDPKAIGKDAKSLLQEFLQGRKIDLPEYNVLATE 199 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKR 209 G H F V I+ +G S+R Sbjct: 200 GEAHCQTFRVSCHITKFQITTEGKGSSRR 228 >gi|326561464|gb|EGE11814.1| ribonuclease III [Moraxella catarrhalis 46P47B1] gi|326562236|gb|EGE12564.1| ribonuclease III [Moraxella catarrhalis 7169] gi|326567190|gb|EGE17312.1| ribonuclease III [Moraxella catarrhalis BC1] gi|326568472|gb|EGE18552.1| ribonuclease III [Moraxella catarrhalis BC7] Length = 262 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 10/224 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L ++GY F + SLL +ALTH S ++SYERLEFLGD +L +I+ LF + E Sbjct: 35 LYAKLGYTFKDVSLLCRALTHRSY--DPKKSYERLEFLGDALLSSIITKALFAQYPKHDE 92 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ +LV ET Q+A L+L+ ++ + RK SI AD VE+LIAA+YL Sbjct: 93 GKLTRMRAALVRQETLVQIADHLELSRYLILGVGERKGGGRHRASILADAVEALIAAVYL 152 Query: 129 DG----GIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 D G + V ++K + G+ + +DAK+ LQE P Y++ G Sbjct: 153 DNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQTLG 212 Query: 183 PDHDPRFTVVVE--ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + F V + G+ P S+R AEQ A ++ + Sbjct: 213 SAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQLN 256 >gi|83814847|ref|YP_445467.1| ribonuclease III [Salinibacter ruber DSM 13855] gi|83756241|gb|ABC44354.1| ribonuclease III [Salinibacter ruber DSM 13855] Length = 248 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 100/223 (44%), Gaps = 6/223 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + +E+ +G + S +ALTH S+ + S ERLEFLGD +L + + +L++ Sbjct: 19 AAIEQLVGRPVDDLSHYRRALTHRSLLRVHPARTFRSNERLEFLGDALLDVFVGEVLYDR 78 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ LVS + AR L L + +S + + SI AD E+ Sbjct: 79 FPEKDEGALTRLRARLVSERPLATYARGLGLGPHLLMSENAAEGDGRDNPSILADAFEAF 138 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD--AKTELQEWAHAKFGVTPEYKVTFR 180 + A+YLD G E A FV RD K++L E A P Y V Sbjct: 139 VGAVYLDLGHEAARGFVQDRVLAPVDLEDVATRDDNYKSQLLEHLQALGRPQPTYHVVEE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP HD FTV V + A +G SK+ AEQ AA L Sbjct: 199 KGPSHDKTFTVEVRVGDAAYERGTAGSKQDAEQQAARRTLDEM 241 >gi|325000484|ref|ZP_08121596.1| RNAse III [Pseudonocardia sp. P1] Length = 249 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 99/227 (43%), Gaps = 14/227 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 S L +G + LL ALTH S ++ + + ERLEFLGD +L ++I+ L+ Sbjct: 14 SPLLSALGVEL-DEELLTLALTHRSYAYEHGGLPTNERLEFLGDSVLSIVITERLYRDHP 72 Query: 65 SAKEGELSVRFNSLVSAETCSQVAREL--------DLASFIRVSSDLRKDVCSFMTSIQA 116 EG+L+ S+V+ + VA L L +++ + SI A Sbjct: 73 DLPEGQLAKLRASVVNMHALAGVAVALPTPGESSDGLGAYLYLGRGEELTGGRSKASILA 132 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPE 174 D E+L+ A+YL G+E + V + + + D KT LQE A PE Sbjct: 133 DATEALLGAVYLQHGLEPSRELVHRLFADLLHSAPLLGAGLDWKTSLQELTAAGGHGVPE 192 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y+ GPDH FT + G G +K+ AEQ AA + Sbjct: 193 YR-IDEEGPDHLKVFTATAVVGGRDLGSGAGRTKKEAEQKAAELAWR 238 >gi|227503342|ref|ZP_03933391.1| ribonuclease III [Corynebacterium accolens ATCC 49725] gi|227075845|gb|EEI13808.1| ribonuclease III [Corynebacterium accolens ATCC 49725] Length = 256 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 111/224 (49%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLL 59 +A+ +S L + +G A L ALTH S ++ + + ERLEFLGD +LGL ++ L Sbjct: 18 AAVDHSPLLESLGVALE-PENLRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVAAKL 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S E ++S S+VS S +ARE++L I + + SI AD Sbjct: 77 YVTYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTT 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++ A+Y + G E A + + + ++ + R D KT LQE P Y Sbjct: 137 EAIFGAIYREHGFETARDVILRLFAEKIDNASVSGRHLDWKTTLQELCAELKAPMPVYSA 196 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GP+HD F+ V ++GL G +K+ AEQ AA E + Sbjct: 197 TA-TGPEHDQTFSAVATVAGLTVGNGQGHNKKLAEQQAAQEACQ 239 >gi|326576294|gb|EGE26209.1| ribonuclease III [Moraxella catarrhalis CO72] Length = 262 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 10/224 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L ++GY F + SLL +ALTH S ++SYERLEFLGD +L +I+ LF + E Sbjct: 35 LYAKLGYTFKDVSLLCRALTHRSY--DPKKSYERLEFLGDALLSSIITKALFAQYPKHDE 92 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ +LV ET Q+A L+L+ ++ + RK SI AD VE+LIAA+YL Sbjct: 93 GKLTRMRAALVRQETLVQIADHLELSRYLILGVGERKGGGRHRASILADAVEALIAAVYL 152 Query: 129 DG----GIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 D G + V ++K + G+ + +DAK+ LQE P Y++ G Sbjct: 153 DNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQTLG 212 Query: 183 PDHDPRFTVVVE--ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + F V + G+ P S+R AEQ A ++ + Sbjct: 213 SAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQLN 256 >gi|219669830|ref|YP_002460265.1| ribonuclease III [Desulfitobacterium hafniense DCB-2] gi|219540090|gb|ACL21829.1| Ribonuclease III [Desulfitobacterium hafniense DCB-2] Length = 262 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 101/209 (48%), Gaps = 6/209 (2%) Query: 21 SLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 L ALTH S E+ +RLEFLGD IL +++ L+ + EGEL+ Sbjct: 50 RLFTTALTHPSYLFENPQSGLENNQRLEFLGDAILDFVVAEYLYLSYPERPEGELTKMRA 109 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 ++V+ T ++ A+++ L + + + SI AD E+++ A+YL G + A Sbjct: 110 AVVNESTLARTAKKIRLGEELLLGKGEQVSGGRERPSILADAWEAIVGAVYLQYGFQEAR 169 Query: 137 TFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 V K+ + + D KT LQE A + Y++ GPDH+ RFT V + Sbjct: 170 RVVLTLLKEEIAEVAQGNYGDYKTMLQEKAQ-REETEVTYRILAEEGPDHNKRFTAGVFL 228 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G +G+ +K+ AEQ AA +VL G Sbjct: 229 QGNLRGKGIGRTKKEAEQRAAQQVLDEFG 257 >gi|306836417|ref|ZP_07469394.1| ribonuclease III [Corynebacterium accolens ATCC 49726] gi|304567698|gb|EFM43286.1| ribonuclease III [Corynebacterium accolens ATCC 49726] Length = 256 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLL 59 +A+ +S L + +G A L ALTH S ++ + + ERLEFLGD +LGL ++ L Sbjct: 18 AAVDHSPLLESLGVALE-PENLRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVAAKL 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S E ++S S+VS S +ARE++L I + + SI AD Sbjct: 77 YVTYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTT 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E++ A+Y + G E A + + + ++ + R D KT LQE P Y Sbjct: 137 EAIFGAIYREHGFETARDVILRLFAEKIDNASVSGRHLDWKTTLQELCAELKAPMPVYSA 196 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GP+HD F+ V ++GL+ G +K+ AEQ AA E + Sbjct: 197 TA-TGPEHDQTFSAVATVAGLSVGNGQGHNKKLAEQQAAQEACQ 239 >gi|293604014|ref|ZP_06686427.1| ribonuclease III [Achromobacter piechaudii ATCC 43553] gi|292817618|gb|EFF76686.1| ribonuclease III [Achromobacter piechaudii ATCC 43553] Length = 253 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 6/213 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +TLE R+ + F + +LLE+ALTH S ERLEFLGD +L +++ +LF + Sbjct: 1 MSLATLENRLDHHFGDPALLEQALTHRS---HGARHNERLEFLGDSVLNFVVAAMLFERY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + + +A+ L+L+ ++R+ K SI AD VE+L Sbjct: 58 SKIDEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G + A + + ++ + +DAKT LQE+ + P Y V Sbjct: 118 GAVFLDAGFDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPLYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213 G H +F V I L S+RAAEQ Sbjct: 178 GAAHSQQFEVECAIPALEIKVTAPGASRRAAEQ 210 >gi|119358263|ref|YP_912907.1| ribonuclease III [Chlorobium phaeobacteroides DSM 266] gi|119355612|gb|ABL66483.1| RNAse III [Chlorobium phaeobacteroides DSM 266] Length = 273 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 75/212 (35%), Positives = 109/212 (51%), Gaps = 8/212 (3%) Query: 19 NRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L + ALTH S+ H Y+ +S +RLEFLGD +LGLLIS LF +F ++EGELS Sbjct: 54 NLFLYQTALTHRSVVHDYEHATPAVQSNQRLEFLGDAVLGLLISDYLFRNFPDSREGELS 113 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +V+ ++ + AR + L + + K+ S AD ESLI A+YLD G+ Sbjct: 114 SNRAKIVNRKSLAGFARSIGLGKHLIIGESADKNKIRSSESALADAFESLIGAIYLDKGL 173 Query: 133 EVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 + A FV K + A + K++L E+ + P YKV G +H+ FT Sbjct: 174 DAAFAFVMKQITEHADFRSIVAAEHNYKSQLIEYTQSHHLPPPVYKVIAEEGAEHEKTFT 233 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + V + QG K+ AEQ+AA E + R Sbjct: 234 IEVSVDDRQMGQGTAPRKKDAEQLAAREAIDR 265 >gi|225850066|ref|YP_002730300.1| ribonuclease III [Persephonella marina EX-H1] gi|225645108|gb|ACO03294.1| ribonuclease III [Persephonella marina EX-H1] Length = 249 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLF 60 R LE+++GY F +++L ALTHSS + Y + YE LEFLGD +L L++S +L Sbjct: 11 ERIKKLEQKLGYVFKDKNLPLTALTHSSFAAEYHKEIKDYEVLEFLGDAVLSLIVSEILI 70 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS ++++S S++AR L L + +S S+ DV E Sbjct: 71 KTFPEASEGELSQTRSAVISEAYLSRLARILGLNELVLLSRGEIAQKGMERESLLCDVFE 130 Query: 121 SLIAALYLDGGIE--VAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 S+ A+Y+D + + ++++K ++K G RD K+ LQ FGV P+Y Sbjct: 131 SVFGAVYVDCDYDIKIPREIFNRFFKDYLIESIKKGNIPRDYKSILQIMTQRLFGVVPKY 190 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + GP+H+ FT+ + + G SK+ AE AA + Sbjct: 191 SMVSAEGPEHEKIFTMECSVDNVVRTFGTGKSKKEAETEAAKKA 234 >gi|99082399|ref|YP_614553.1| RNAse III [Ruegeria sp. TM1040] gi|99038679|gb|ABF65291.1| RNAse III [Ruegeria sp. TM1040] Length = 242 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 76/202 (37%), Positives = 117/202 (57%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 + R+G+ F++ LL +ALTH S+S ++ +RLEFLGDR+LGL+++T L H A Sbjct: 23 AFQARLGHEFSSPELLIRALTHPSVSSPNRQDNQRLEFLGDRVLGLVMATALLEHDKDAT 82 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+L+ RFN+LV ETC+ VAR++DL + +++ ++ D +E++IAA+Y Sbjct: 83 EGQLAPRFNALVRKETCADVARQIDLGAVLKLGRSEMLSGGRRKQALLGDAMEAVIAAVY 142 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 D G E A + + + W +R + RD KT LQE+ A+ P Y + R GPDH+P Sbjct: 143 RDAGFEAAQSVILRLWGKRVGTVEEDARDPKTALQEFVQARRQPPPAYVLVARKGPDHEP 202 Query: 188 RFTVVVEISGLAPAQGMDCSKR 209 FT+ + Q SKR Sbjct: 203 IFTIAARLEDGTEEQATAGSKR 224 >gi|163941587|ref|YP_001646471.1| ribonuclease III [Bacillus weihenstephanensis KBAB4] gi|229013032|ref|ZP_04170197.1| Ribonuclease 3 [Bacillus mycoides DSM 2048] gi|229134657|ref|ZP_04263466.1| Ribonuclease 3 [Bacillus cereus BDRD-ST196] gi|229564349|sp|A9VT87|RNC_BACWK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|163863784|gb|ABY44843.1| Ribonuclease III [Bacillus weihenstephanensis KBAB4] gi|228648703|gb|EEL04729.1| Ribonuclease 3 [Bacillus cereus BDRD-ST196] gi|228748286|gb|EEL98146.1| Ribonuclease 3 [Bacillus mycoides DSM 2048] Length = 245 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A E+ S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E ++ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGYLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNEALGLGSGKSKK 227 >gi|50840533|gb|AAT83200.1| ribonuclease III [Propionibacterium acnes KPA171202] Length = 366 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 139 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 197 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + ++AR+L + I++ + TSI AD E+L+ Sbjct: 198 PDKPEGQLAKLRSAVVSTVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 257 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ S Sbjct: 258 GAVELSAGLPNVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 316 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 317 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 354 >gi|114327656|ref|YP_744813.1| ribonuclease III [Granulibacter bethesdensis CGDNIH1] gi|114315830|gb|ABI61890.1| ribonuclease III [Granulibacter bethesdensis CGDNIH1] Length = 258 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 116/222 (52%), Gaps = 12/222 (5%) Query: 10 EKRIGYAFANRSLLEKALTHSSISH-----------SYQESYERLEFLGDRILGLLISTL 58 E + + FA R LL +ALTH S S ERLEF+GDR+LGL+++ Sbjct: 23 EALLSHRFARRDLLAEALTHRSAVKIMHGQTGQSLPRGAGSNERLEFVGDRVLGLVVAEW 82 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L F +EGEL R LVS + +A + L + V+ K + ++ +D Sbjct: 83 LVERFPLEQEGELGRRLAHLVSQPVLAGIAEQSGLPQILSVAPGEAKAGVRKLATVLSDA 142 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +E+LI ALYLD G++ F+ ++W+ + + +DAKT LQEWA P Y++ Sbjct: 143 MEALIGALYLDAGLDPVRQFIRRHWEPVMQRQTEPPKDAKTALQEWAQGLGLHLPTYRLA 202 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 R GP H+P F V V + QG SKRAAEQ+AA ++L Sbjct: 203 RREGPPHNPVFWVEVLVGDHV-GQGQAGSKRAAEQLAAQDLL 243 >gi|159042756|ref|YP_001531550.1| ribonuclease III [Dinoroseobacter shibae DFL 12] gi|189043308|sp|A8LLD9|RNC_DINSH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157910516|gb|ABV91949.1| ribonuclease III [Dinoroseobacter shibae DFL 12] Length = 229 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 115/207 (55%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + S RIG+ F LL +ALTH+S S + + +RLEFLGDR+LGL+++ L Sbjct: 4 SKEISAFCDRIGHRFDRPELLVRALTHASRSTAGRSDNQRLEFLGDRVLGLVMAEALLEA 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A+EG+L+ R+N+LV ETC++VARE+ L +R+ ++ D +E++ Sbjct: 64 DPQAREGQLAPRYNALVRKETCAEVAREIGLGDVLRLGRSEMLTGGRRKDALLGDGMEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+Y D G E A + + W +R RD KT LQEWA A+ P Y + RSG Sbjct: 124 IAAVYRDAGFEAAKALILRLWGKRIGAVEADARDPKTALQEWAQARGLPPPAYIESARSG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDH P FT+ + A A+ SKR Sbjct: 184 PDHAPVFTISARLETGACAEAQAGSKR 210 >gi|302342152|ref|YP_003806681.1| ribonuclease III [Desulfarculus baarsii DSM 2075] gi|301638765|gb|ADK84087.1| ribonuclease III [Desulfarculus baarsii DSM 2075] Length = 237 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 84/220 (38%), Positives = 119/220 (54%), Gaps = 5/220 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62 L ++G+ F++ + L++AL HSS H S ERLEFLGD +L L+++ LF Sbjct: 9 LKQLADQVGHGFSDWTALDEALRHSSFVHENPQRGPSNERLEFLGDAVLELVVTQELFLR 68 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 FD A EG+LS +S+V+ ++ AR++DL I + + TSI AD +E++ Sbjct: 69 FDQASEGQLSRARSSVVNEARLAEAARQIDLGPCILLGKGEQGQGGQEKTSILADALEAV 128 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +AA+YLDGG+E A V + RRD KT LQE +TP Y+ Sbjct: 129 LAAVYLDGGLEAARDCVLALLGPLDERVIDRAPRRDYKTMLQERVQEDLRLTPRYRTIDE 188 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 SGPDHD F+V +EI+ A G SK+ AEQ AA L Sbjct: 189 SGPDHDKTFSVSIEINDRQLAMGAGKSKKEAEQNAARRGL 228 >gi|86135727|ref|ZP_01054306.1| ribonuclease III [Roseobacter sp. MED193] gi|85826601|gb|EAQ46797.1| ribonuclease III [Roseobacter sp. MED193] Length = 222 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 78/201 (38%), Positives = 114/201 (56%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E+RIG+ F LL +ALTH S+S ++ +RLEFLGDR+LGL+++T L +H A E Sbjct: 4 FEQRIGHQFVRPELLVRALTHPSVSSPNRKDNQRLEFLGDRVLGLVMATALLDHDKDASE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ RFN+LV E C+ VARE++L +++ ++ D +E++IAA+Y Sbjct: 64 GQLAPRFNALVRKEACADVAREIELGEVLKLGRSEMMSGGRRKLALLGDGMEAVIAAVYK 123 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 D G EVA + + W R + RD KT LQE+ A+ P Y R+GPDH P Sbjct: 124 DAGFEVAQAMILRLWGARIHQVEADARDPKTALQEYVQARRQNPPAYVQVARTGPDHQPI 183 Query: 189 FTVVVEISGLAPAQGMDCSKR 209 FT+ V + + SKR Sbjct: 184 FTIAVRLEDGTEERATAGSKR 204 >gi|296120504|ref|YP_003628282.1| ribonuclease III [Planctomyces limnophilus DSM 3776] gi|296012844|gb|ADG66083.1| ribonuclease III [Planctomyces limnophilus DSM 3776] Length = 263 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 3/222 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + + E R+GY F + LL +AL+H+S + + ES ERLEFLGD ILG + LLF + Sbjct: 8 VPLTECEARLGYHFRSPELLMQALSHASAAKTRLESNERLEFLGDAILGAAVCDLLFRKY 67 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EGEL+ + +VS C +A+EL L F+ + L + SI + ES+I Sbjct: 68 PKSTEGELTRIKSFVVSRHVCGLLAKELHLDQFVIIGKGLCGT-PNVPVSILSATFESVI 126 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA++LDGG + A F+ + + + ++ R+ K+ LQ++A G TP Y + Sbjct: 127 AAVFLDGGFDAAKEFIIRLIEPHVEQMVGAEYGRNYKSVLQQYAQKTLGETPRYDLLKEY 186 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH F V + + A +K+ AEQ AAA L Sbjct: 187 GPDHLKYFKVSAALGEVVYAAAWGINKKEAEQKAAANALSEL 228 >gi|84515163|ref|ZP_01002526.1| ribonuclease III [Loktanella vestfoldensis SKA53] gi|84511322|gb|EAQ07776.1| ribonuclease III [Loktanella vestfoldensis SKA53] Length = 226 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 82/207 (39%), Positives = 119/207 (57%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + ++ +R+GY+F LL +++THSS+ +++ +RLEFLGDR+LGL+++ L Sbjct: 4 SADLASFSQRLGYSFVRPDLLVRSVTHSSMVSIHRDDNQRLEFLGDRVLGLVMAEALLKA 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 SA EG L+ R+N+LV ETC+ VARE+DL + I++ K ++ AD +E++ Sbjct: 64 DPSAPEGLLAPRYNALVRRETCADVAREVDLGAVIKLGRSEMKSGGRRKEALLADAMEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+Y DGG + A V W R RDAKT LQEWA A+ P Y T R+G Sbjct: 124 IAAIYQDGGFDAARKVVLHLWGARITNVADDARDAKTALQEWAQARGEAPPSYTETARTG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDH P FT+ V + SKR Sbjct: 184 PDHQPAFTIAVTLESGQTETATAGSKR 210 >gi|149200057|ref|ZP_01877082.1| ribonuclease III [Lentisphaera araneosa HTCC2155] gi|149136815|gb|EDM25243.1| ribonuclease III [Lentisphaera araneosa HTCC2155] Length = 232 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 114/225 (50%), Gaps = 9/225 (4%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59 ++ + LE + F +LL +ALTH S +E +RLEFLGD ++ L++S L Sbjct: 2 SISFKVLEDNLKCKFNQPTLLREALTHRSYKFESKEPLNDNQRLEFLGDAVIELIVSRYL 61 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F+ + A EG+L+ +LV + A+ + L ++ + K + S +D Sbjct: 62 FDRYPDAPEGDLTKYRAALVKESALFECAKSIKLGKYLLLGKSELKSQGNERPSNLSDAY 121 Query: 120 ESLIAALYLDGGIEVAGTF----VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 E+L+AA+YLD G E A +F ++K W + A ++ K LQE G P+Y Sbjct: 122 EALMAAIYLDQGYETAQSFHINILEKLWDEPADLL--LVQNPKGTLQELTQKNHGSPPKY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 ++GP+HDP + V ++ ++G + +AA++ AA + + Sbjct: 180 ITISKTGPEHDPLYKVECILNKELISKGQGKTLKAAQENAARKAI 224 >gi|42526537|ref|NP_971635.1| ribonuclease III [Treponema denticola ATCC 35405] gi|81412559|sp|Q73NX5|RNC_TREDE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|41816730|gb|AAS11516.1| ribonuclease III [Treponema denticola ATCC 35405] gi|325473478|gb|EGC76673.1| ribonuclease 3 [Treponema denticola F0402] Length = 246 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 112/221 (50%), Gaps = 5/221 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFD 64 +K+ G F + LL+ A H S S+ + + ERLEFLGD +LGL+ ++ L+ F+ Sbjct: 18 EFQKQAGLKFKDLRLLDLAFHHRSFSNEHNNFHANNERLEFLGDSVLGLVAASYLYKSFE 77 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ S VS + S+ A +L++++++ + +I AD +E++I Sbjct: 78 DRPEGELAKIKASAVSEDALSKTASKLNISNYLVLGRGEEMSGGREKKAILADALEAVIG 137 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A Y+D G + A FV + + ++ KF D K+ LQE KF P+Y++ SG Sbjct: 138 AYYIDSGFKAAQKFVLRLLESTIHSVLEKKFISDYKSLLQELVQKKFKTVPKYELKKASG 197 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDHD F V I+G +K+ AEQ A + Sbjct: 198 PDHDRTFWFSVSINGKVYGPLSGKTKKEAEQSVAKVAYENL 238 >gi|311104757|ref|YP_003977610.1| ribonuclease III [Achromobacter xylosoxidans A8] gi|310759446|gb|ADP14895.1| ribonuclease III [Achromobacter xylosoxidans A8] Length = 253 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 6/213 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +TLE R+ + F++ +LLE+ALTH S ERLEFLGD +L +++ +LF + Sbjct: 1 MSLATLENRLDHHFSDPALLEQALTHRS---HGARHNERLEFLGDSVLNFVVAAMLFERY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + + +A+ L+L+ ++R+ K SI AD VE+L Sbjct: 58 SKIDEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G + A + + ++ + +DAKT LQE+ + P Y V Sbjct: 118 GAVFLDAGFDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPLYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 G H +F V I L S+RAAEQ Sbjct: 178 GAAHSQQFEVECAIPALEIKVMAPGASRRAAEQ 210 >gi|94987013|ref|YP_594946.1| ribonuclease III [Lawsonia intracellularis PHE/MN1-00] gi|94731262|emb|CAJ54625.1| dsRNA-specific ribonuclease [Lawsonia intracellularis PHE/MN1-00] Length = 233 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 110/225 (48%), Gaps = 10/225 (4%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60 + L++ +GY F + LL ALTHSS + E ERLEFLGD +L + IS LF Sbjct: 1 MDLKELQEDLGYYFKDEQLLITALTHSSWVNENDVTAEHNERLEFLGDAVLEICISEELF 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 A+EGEL+ ++LV+ + +AREL L ++ ++ ++ AD +E Sbjct: 61 KRHPEAREGELTRMRSNLVNTKMLVLLARELKLNQYLLLARGEENQGGRQRNTLLADTME 120 Query: 121 SLIAALYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 ++ A+++DG + A + D +W + KS +D KT LQE P+Y Sbjct: 121 AVFGAVFVDGDLFYARKVISKSYDNFWPK---KSAALVKDFKTRLQEETQRHIKGLPKYI 177 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + GP+H+ F V VE+ + + AEQ AA L+ Sbjct: 178 LEGMHGPEHEKIFEVCVELPDGQVFRASGTGLKRAEQEAARIALE 222 >gi|269797766|ref|YP_003311666.1| ribonuclease III [Veillonella parvula DSM 2008] gi|282849040|ref|ZP_06258429.1| ribonuclease III [Veillonella parvula ATCC 17745] gi|294791672|ref|ZP_06756820.1| ribonuclease III [Veillonella sp. 6_1_27] gi|294793530|ref|ZP_06758667.1| ribonuclease III [Veillonella sp. 3_1_44] gi|269094395|gb|ACZ24386.1| ribonuclease III [Veillonella parvula DSM 2008] gi|282581315|gb|EFB86709.1| ribonuclease III [Veillonella parvula ATCC 17745] gi|294455100|gb|EFG23472.1| ribonuclease III [Veillonella sp. 3_1_44] gi|294456902|gb|EFG25264.1| ribonuclease III [Veillonella sp. 6_1_27] Length = 246 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 111/226 (49%), Gaps = 6/226 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 L R+ ++ S+++ A TH+S ++ ++ +RLEFLGD +L L+I L Sbjct: 17 ESLHELVARLDIPVSDISIIDCAFTHTSYANEHKSKHIHHNQRLEFLGDAVLDLIIGEYL 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F + EG L+ + V ++ + V+R L L ++ + R + SI AD Sbjct: 77 FKTYPDMAEGNLTKIKAATVCEDSLASVSRSLQLGQYLLLGHGERASGGNDRNSILADTF 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKV 177 ESLI A+Y+ + A FV K+ +++ GK +D KT LQE+ Y + Sbjct: 137 ESLIGAIYISTDYQTAMAFVLKHLTTYIMQALEGKRGKDYKTLLQEYVQRDGDKHIVYHL 196 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDH F + VEI+G+ G SK+ AEQ AA L++ Sbjct: 197 LSESGPDHAKTFHMEVEINGVTYEAGSGKSKKIAEQHAAQLTLEKL 242 >gi|323359692|ref|YP_004226088.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037] gi|323276063|dbj|BAJ76208.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037] Length = 230 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 103/226 (45%), Gaps = 7/226 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 + + S L +++G + LL ALTH S ++ ERLEFLGD +LG ++ L Sbjct: 4 NNVERSALTEKLGVDI-DPELLSLALTHRSFAYENGGIPHNERLEFLGDSVLGQAVTVRL 62 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F EG+L+ R +VS ++VAR + L +R+ SI AD + Sbjct: 63 FTRHPDLDEGQLAKRRAGVVSTIALAEVARGIGLGQHVRLGRGEILTGGHDKDSILADTM 122 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKV 177 E++I A YL G + A V + + ++ D KT LQE A P Y V Sbjct: 123 EAIIGATYLSAGPDAATAMVLRLVEPLMADPARYGAAMDPKTSLQEIAARLSVPAPTYSV 182 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GPDHD RFT V + + G SK+ AE AA + Sbjct: 183 -EAAGPDHDRRFTATVRVGDVV-TTGTGSSKKQAEMAAALTAWREL 226 >gi|170725604|ref|YP_001759630.1| ribonuclease III [Shewanella woodyi ATCC 51908] gi|238688672|sp|B1KI57|RNC_SHEWM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|169810951|gb|ACA85535.1| Ribonuclease III [Shewanella woodyi ATCC 51908] Length = 225 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 107/213 (50%), Gaps = 6/213 (2%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M ++ L + +GY F+ +LL+ ALTH S + + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNIPRLCRTLGYDFSELALLDHALTHRSAASKH---NERLEFLGDSILSIIISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV + +++ E L ++++ K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVCGKMLAEIGFEFKLGDYLKLGPGELKSGGFRRESIIADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLD +EV + V ++K R ++D KT LQE P YKVT Sbjct: 118 EAIIGAVYLDSDLEVTRSLVLGWYKTRLETIQPINQKDPKTLLQELLQGYKKPLPVYKVT 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRA 210 G H FT+ + P G+ S+R Sbjct: 178 DIRGEAHAQTFTIECYVEELRKPVVGVASSRRK 210 >gi|294784571|ref|ZP_06749860.1| ribonuclease III [Fusobacterium sp. 3_1_27] gi|294487787|gb|EFG35146.1| ribonuclease III [Fusobacterium sp. 3_1_27] Length = 234 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 118/227 (51%), Gaps = 7/227 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ Sbjct: 3 NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ +A EG ++ +VS ++++R++ + F+ +S SI AD E Sbjct: 63 KNYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILADSFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+Y+D ++ A F + KQ ++ + D K+ LQE+ +F P Y++ Sbjct: 123 AILGAVYMDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPTYELI 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDH F + V + + + +K+ AEQ++A + + G+ Sbjct: 183 AERGPDHMKEFEIQVIVGNYKE-KAVARNKKKAEQLSAKALCIKLGV 228 >gi|229168588|ref|ZP_04296311.1| Ribonuclease 3 [Bacillus cereus AH621] gi|228614994|gb|EEK72096.1| Ribonuclease 3 [Bacillus cereus AH621] Length = 245 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A E+ S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E+ ++ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLEIVWGYLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNEALGLGSGKSKK 227 >gi|297626608|ref|YP_003688371.1| ribonuclease III [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922373|emb|CBL56945.1| Ribonuclease III [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 240 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 112/223 (50%), Gaps = 7/223 (3%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 + R++ L K +G + LL ALTH S ++ + ERLEFLGD +LG+ ++ L+ Sbjct: 8 SSRFAELIKELGV-PLDAELLGLALTHRSYAYEHGQIPHNERLEFLGDSVLGINVTDYLY 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 HF EG L+ ++VS+ + ++VAR L + +++ TSI AD E Sbjct: 67 RHFPDYAEGRLAKLRAAVVSSVSLAEVARSLGIGQLVKLGHGELTTGGRDKTSILADTTE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+Y+ A FV + ++ K D KT LQE A A PEY+ Sbjct: 127 ALIGAIYM-TDPSGAAKFVHHIFDPLVDRAVKMGAGLDWKTSLQEIAAAMESDPPEYR-I 184 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +GPDHD RFT V + G GM +K+ AEQ AA + Sbjct: 185 SETGPDHDKRFTAVALVDGRTFDPGMGHNKKQAEQHAAENAFR 227 >gi|170781177|ref|YP_001709509.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus] gi|169155745|emb|CAQ00866.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus] Length = 238 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 76/208 (36%), Positives = 99/208 (47%), Gaps = 5/208 (2%) Query: 20 RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 LLE ALTH S ++ + ERLEFLGD ILG ++ +L+ EGEL+ R S Sbjct: 26 PELLELALTHRSYAYEHGGIPHNERLEFLGDSILGQAVTVMLYLENPDLDEGELAKRRAS 85 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 LVS+ ++VA + L + + +SI AD VE++I A YLD G E A Sbjct: 86 LVSSVALAEVATRIGLGEHLLLGRGEELTGGRAKSSILADTVEAIIGASYLDAGGEAATG 145 Query: 138 FVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 V + +F D KT LQE A + P Y V+ SGPDH RF VV + Sbjct: 146 LVLRLIAPLLEDPARFGAAMDPKTALQESAARQGLPAPAYDVSD-SGPDHSKRFHAVVTV 204 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G SK+ AE AA E R Sbjct: 205 GDAVRTTGEGSSKKQAEMTAALEAWTRL 232 >gi|296113914|ref|YP_003627852.1| ribonuclease III [Moraxella catarrhalis RH4] gi|295921608|gb|ADG61959.1| ribonuclease III [Moraxella catarrhalis RH4] Length = 266 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 112/224 (50%), Gaps = 10/224 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L ++GY F + SLL +ALTH S ++SYERLEFLGD +L +I+ LF + E Sbjct: 39 LYAKLGYTFKDVSLLCRALTHRSY--DPKKSYERLEFLGDALLSSIITKALFAQYPKHDE 96 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ +LV ET Q+A L+L+ + + RK SI AD VE+LIAA+YL Sbjct: 97 GKLTRMRAALVRQETLVQIADHLELSRHLILGVGERKGGGRHRASILADAVEALIAAVYL 156 Query: 129 DG----GIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 D G + V ++K + G+ + +DAK+ LQE P Y++ G Sbjct: 157 DNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQTLG 216 Query: 183 PDHDPRFTVVVE--ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + F V + G+ P S+R AEQ A ++ + Sbjct: 217 SAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQLN 260 >gi|326560591|gb|EGE10972.1| ribonuclease III [Moraxella catarrhalis 103P14B1] gi|326565582|gb|EGE15745.1| ribonuclease III [Moraxella catarrhalis 12P80B1] gi|326572025|gb|EGE22027.1| ribonuclease III [Moraxella catarrhalis BC8] gi|326573972|gb|EGE23922.1| ribonuclease III [Moraxella catarrhalis O35E] gi|326574964|gb|EGE24894.1| ribonuclease III [Moraxella catarrhalis 101P30B1] Length = 262 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 112/224 (50%), Gaps = 10/224 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L ++GY F + SLL +ALTH S ++SYERLEFLGD +L +I+ LF + E Sbjct: 35 LYAKLGYTFKDVSLLCRALTHRSY--DPKKSYERLEFLGDALLSSIITKALFAQYPKHDE 92 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ +LV ET Q+A L+L+ + + RK SI AD VE+LIAA+YL Sbjct: 93 GKLTRMRAALVRQETLVQIADHLELSRHLILGVGERKGGGRHRASILADAVEALIAAVYL 152 Query: 129 DG----GIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 D G + V ++K + G+ + +DAK+ LQE P Y++ G Sbjct: 153 DNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQTLG 212 Query: 183 PDHDPRFTVVVE--ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + F V + G+ P S+R AEQ A ++ + Sbjct: 213 SAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQLN 256 >gi|260432756|ref|ZP_05786727.1| ribonuclease III [Silicibacter lacuscaerulensis ITI-1157] gi|260416584|gb|EEX09843.1| ribonuclease III [Silicibacter lacuscaerulensis ITI-1157] Length = 226 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 119/206 (57%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +KR+G+ FAN LL +ALTH S+S + + +RLEFLGDR+LGL++++ L Sbjct: 4 SADMKAFQKRLGHQFANPELLVRALTHGSVSSATRPDNQRLEFLGDRVLGLVMASALLEA 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 +A EG+L+ RFN+LV ETC+ VAR++DL + +++ ++ D +E++ Sbjct: 64 DKTATEGQLAPRFNALVRKETCADVARQIDLGAVLKLGRSEMMSGGRRKQALLGDAMEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+Y D G E A V K W R + RDAKT LQEWA A+ P Y R+G Sbjct: 124 IAAVYRDAGFEAARDVVLKLWGDRLHQVKADARDAKTALQEWAQARGQKPPSYVELSRTG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSK 208 PDH P FT+V + AQ SK Sbjct: 184 PDHAPVFTIVARLESGPEAQATAPSK 209 >gi|308388873|gb|ADO31193.1| putative ribonuclease III [Neisseria meningitidis alpha710] Length = 267 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 113/219 (51%), Gaps = 6/219 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++KR+GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 39 HAAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPK 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 96 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + R + +D KT LQE A+ P+Y++ + G Sbjct: 156 VSFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 215 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 +D F + ++ L + S++AAEQ AA E L+ Sbjct: 216 ANDSMFVISCDLGELGFVCRAKGTSRKAAEQSAAKEALQ 254 >gi|189499162|ref|YP_001958632.1| Ribonuclease III [Chlorobium phaeobacteroides BS1] gi|189494603|gb|ACE03151.1| Ribonuclease III [Chlorobium phaeobacteroides BS1] Length = 271 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 5/222 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63 + LE +G++ + L ALTH SI H + E S +RLEFLGD +L L+IS LL+ F Sbjct: 41 TWLEDILGFSPIDEKLYVIALTHRSIVHDHPEASDSNQRLEFLGDAVLDLIISELLYTVF 100 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG+LS +V+ ++ + A ++ L + + K TS AD E+LI Sbjct: 101 PESDEGKLSSNRAKIVNRKSLAGFAGKISLGEHLLIGETADKINIQTSTSSLADAFEALI 160 Query: 124 AALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 ALYLD G+E F+ ++ K + K+ L E+ + P Y V Sbjct: 161 GALYLDKGLEETRKFIMRHVAGHVDIKKIDTVENNYKSRLIEYTQSCQIAPPVYTVVSEE 220 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G +H+ FT+ V +G K+ AEQ AA E L+ Sbjct: 221 GAEHEKLFTIEVSCDNRPLGKGSARRKKDAEQTAAREALEEL 262 >gi|227548991|ref|ZP_03979040.1| ribonuclease III [Corynebacterium lipophiloflavum DSM 44291] gi|227078942|gb|EEI16905.1| ribonuclease III [Corynebacterium lipophiloflavum DSM 44291] Length = 254 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 6/220 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFN 61 + ++ L +G +L ALTH S ++ + + ERLEFLGD +LGL ++ L+ Sbjct: 22 VDHAPLLAALGVE-VEPEILRLALTHRSFANEHGPLPNNERLEFLGDAVLGLSVANSLYE 80 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F S E ++S S+VS + VARE+ L + + + SI AD E+ Sbjct: 81 RFPSRPESDISKMRASIVSRYGLADVAREIGLGAHVLLGRGEEVTGGRDKDSILADTTEA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 L A+Y G E A V + ++ + + R D KT LQE EY+ T Sbjct: 141 LFGAIYRQHGFEPARDVVLRLFESKLESATATGRHQDWKTVLQERLAELKAPAAEYRATS 200 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDHD FT V + + +G+ +K+ AEQ AA Sbjct: 201 V-GPDHDQTFTADVFVGEDSRGRGVGPNKKLAEQEAARIA 239 >gi|227833427|ref|YP_002835134.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975] gi|262184417|ref|ZP_06043838.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975] gi|227454443|gb|ACP33196.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975] Length = 256 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 110/226 (48%), Gaps = 6/226 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLL 59 + + ++ L K +G + LL ALTH S ++ + + ERLEFLGD +LGL I+ L Sbjct: 18 AEVDHAPLLKALGVEIND-ELLCLALTHRSFANENGHLPNNERLEFLGDAVLGLSIAAKL 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S E ++S S+VS S VARE+ + + + + SI AD Sbjct: 77 YEKYPSRPESDISKMRASIVSRYGLSDVAREIGVGEHVLLGKGEQSTGGRDKDSILADTT 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E+++ A+Y G EVA V K + + + R D KT LQE P Y Sbjct: 137 EAILGAIYRQHGFEVARGVVLKLFAAKIDNAVVSGRHMDWKTTLQELCAELKAAMPVYSA 196 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T +GP+HD F V ++GL +G +K+ AEQ AA E + Sbjct: 197 TS-TGPEHDQTFNAVATVAGLTVGRGTGHNKKLAEQQAAEEACQAL 241 >gi|89895402|ref|YP_518889.1| hypothetical protein DSY2656 [Desulfitobacterium hafniense Y51] gi|89334850|dbj|BAE84445.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 262 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 101/209 (48%), Gaps = 6/209 (2%) Query: 21 SLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 L ALTH S E+ +RLEFLGD IL +++ L+ + EGEL+ Sbjct: 50 RLFTTALTHPSYLFENPQSGLENNQRLEFLGDAILDFVVAEYLYLSYPERPEGELTKMRA 109 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 ++V+ T ++ A+++ L + + + SI AD E+++ A+YL G + A Sbjct: 110 AVVNESTLARTAKKIRLGEELLLGKGEQVSGGRERPSILADAWEAIVGAVYLQYGFQEAR 169 Query: 137 TFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 V K+ + + D KT LQE A + Y++ GPDH+ RFT V + Sbjct: 170 RVVLTLLKEEIAEVAQGNYGDYKTMLQEKAQ-REETEVTYRILAEEGPDHNKRFTAGVFL 228 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G +G+ +K+ AEQ AA +VL G Sbjct: 229 QGNLRGKGIGRTKKEAEQRAAQQVLDEFG 257 >gi|94497606|ref|ZP_01304175.1| ribonuclease III [Sphingomonas sp. SKA58] gi|94423023|gb|EAT08055.1| ribonuclease III [Sphingomonas sp. SKA58] Length = 227 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 93/215 (43%), Positives = 123/215 (57%), Gaps = 3/215 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ IG A NR+ E+ALTH S +YERLEFLGDRILGLLI +F+ F E Sbjct: 14 LKDLIGRAPHNRATFEQALTHGSA---KPVNYERLEFLGDRILGLLIGEWVFDRFADEPE 70 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS R+N+LVS ETC+ +AR + + + R D + ++ DV+E+LI ALYL Sbjct: 71 GKLSRRYNALVSGETCADIARTAGVPKHLILGKQARDDGAADSDNVLGDVMEALIGALYL 130 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +GG++ A V + W R R K+ LQEWA A PEY++T RSGP H R Sbjct: 131 EGGLDEARALVRRLWGNRVDTQTSAPRHPKSALQEWAAANRRKPPEYQMTDRSGPQHALR 190 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 FTV V I G A SK+ AE AA +L++ Sbjct: 191 FTVAVSIKGAGEASATGASKQEAETAAAKALLEKL 225 >gi|331698524|ref|YP_004334763.1| Ribonuclease 3 [Pseudonocardia dioxanivorans CB1190] gi|326953213|gb|AEA26910.1| Ribonuclease 3 [Pseudonocardia dioxanivorans CB1190] Length = 238 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 102/225 (45%), Gaps = 9/225 (4%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + L + +G + LL ALTH S ++ + ERLEFLGD +L ++++ L+ Sbjct: 2 EDHGPLLRALGVEL-DPELLTLALTHRSYAYENGGLPTNERLEFLGDSVLSIVVTERLYL 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADV 118 EG+L+ S+V+ + VA EL L + + + SI AD Sbjct: 61 DHPDLPEGQLAKLRASVVNMNALAGVAAELVPDGLGAHLFLGRGEELTGGRAKASILADA 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYK 176 E+LI A+YL G+E + + + + + D KT LQE A PEY+ Sbjct: 121 TEALIGAVYLQHGLETSRDVIHRLFADLLRNAPLLGAGLDWKTSLQELTAAAELGVPEYR 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +T GPDH FT + G G +K+ AEQ AAA + Sbjct: 181 IT-EDGPDHLKTFTATAVVGGRELGSGDGRTKKEAEQKAAALAWR 224 >gi|220904300|ref|YP_002479612.1| ribonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868599|gb|ACL48934.1| Ribonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 243 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 6/225 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNH 62 ++K++G+ F + LLE ALTHSS ++ QE ER EFLGD +L L +S L+ Sbjct: 16 LELVKKQLGHGFIRKDLLELALTHSSWANECGPGQEHNERQEFLGDAVLELCVSWELYRR 75 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F SA+EGEL+ +SLVSA + ++ AR++ L +++ ++ +D +E++ Sbjct: 76 FPSAREGELTKMRSSLVSAVSLAERARDMGLDRLLKLGRGEESQGGRKRDAVLSDALEAV 135 Query: 123 IAALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +AA+Y DGG A V + + GK +D KT LQE + +FG P Y Sbjct: 136 LAAIYEDGGFAAAQEAVGRIFADQWPSRAGDGKASKDYKTRLQEASQQRFGQAPLYTRVG 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP+H F V + + + S + AEQ AA L+ G Sbjct: 196 SHGPEHSKVFEVALRLPDGSEFSASGSSCKKAEQQAARIALETLG 240 >gi|313124070|ref|YP_004034329.1| ribonuclease iii [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280633|gb|ADQ61352.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 231 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 112/231 (48%), Gaps = 10/231 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ L+++ G F + LLE+A THSS + +YE+LEFLGD +L + Sbjct: 1 MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ HF EGEL+ +++V E S+VA + I++ K ++ Sbjct: 61 SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKKEIKLGVGEEKAGGRKRKALL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTP 173 DV E+ AL+LD GIE F+ + + +G RD KT+LQE VT Sbjct: 121 EDVFEAFNGALFLDQGIEAVEKFLRQTVYP-LIAAGYFTPSRDFKTDLQELLQQNGSVTI 179 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 EY+V S P F V V + G A G +K+ AEQ AA+ L+ Sbjct: 180 EYRVLNESQQP--PHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 228 >gi|313892793|ref|ZP_07826374.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412] gi|313442724|gb|EFR61135.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412] Length = 246 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 117/227 (51%), Gaps = 8/227 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 L R+ ++ S+++ A TH+S ++ ++ +RLEFLGD +L L+I L Sbjct: 17 ESLHELVARLDIPVSDISIIDCAFTHTSYANEHKSKHINHNQRLEFLGDAVLDLIIGEYL 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F ++ EG L+ + V ++ + V+R L L ++ + R + SI AD Sbjct: 77 FKNYPDMAEGNLTKIKAATVCEDSLASVSRSLQLGQYLLLGHGERASGGNDRNSILADTF 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 ESLI A+Y+ + A TFV K+ + ++AL+ GK D KT LQE+ Y+ Sbjct: 137 ESLIGAIYISTDYQTAMTFVLKHLTIYIKQALE-GKRGNDYKTLLQEYVQRDGDKHIVYR 195 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + SGPDH F +VVEI+G+ G SK+ AEQ AA L++ Sbjct: 196 LLSESGPDHAKTFHIVVEINGVTYEAGSGKSKKIAEQHAAQLTLEKL 242 >gi|254302541|ref|ZP_04969899.1| ribonuclease III [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322733|gb|EDK87983.1| ribonuclease III [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 234 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 118/227 (51%), Gaps = 7/227 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ Sbjct: 3 NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ +A EG ++ +VS ++++R++ + F+ +S SI AD E Sbjct: 63 KNYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILADSFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+Y+D +E A F + KQ ++ + D K+ LQE+ +F P Y++ Sbjct: 123 AILGAVYIDSNLEEARVFALSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPTYELV 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDH F + V + + + +K+ AEQ++A + + G+ Sbjct: 183 AERGPDHMKEFEIQVIVGNYKE-KAVARNKKKAEQLSAKALCIKLGV 228 >gi|329894313|ref|ZP_08270183.1| Ribonuclease III [gamma proteobacterium IMCC3088] gi|328923109|gb|EGG30432.1| Ribonuclease III [gamma proteobacterium IMCC3088] Length = 221 Score = 231 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 114/223 (51%), Gaps = 6/223 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ S L++ IGY F + SL+E AL H S+ ++ ERLEFLGD ++ +++ LF + Sbjct: 1 MQLSALQQAIGYQFKDLSLIELALAHRSVG---AKNNERLEFLGDSLVNHVVAEALFKRY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGE+S R LV ET + +ARE +L F+ + RK SI AD +E++ Sbjct: 58 PKAPEGEMSRRRAYLVKGETLAAIAREKNLGDFVELGQGERKSGGHRRKSILADALEAVA 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+ LD E A V +++ R F +DAKT LQEW + PEY + Sbjct: 118 AAILLDSDFETAKQVVFAWFRDRLNDETSFAASKDAKTSLQEWLQGRGLALPEYHLVATR 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 G DH F V + S+R AEQ +A ++L R Sbjct: 178 GEDHQKVFVVECRVPSKGLKETASASSRRRAEQTSAQQILDRL 220 >gi|328948083|ref|YP_004365420.1| ribonuclease 3 [Treponema succinifaciens DSM 2489] gi|328448407|gb|AEB14123.1| Ribonuclease 3 [Treponema succinifaciens DSM 2489] Length = 248 Score = 231 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 7/228 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 + + F N SLL+ A H S S+ + ERLEFLGD +LGL + L+ Sbjct: 20 ELDEFCRHLKLHFKNYSLLDLAFHHRSYSNENTSYKRYNNERLEFLGDSVLGLATAAFLY 79 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVV 119 N KEG+L+ ++VS ++ + +A E + + ++ + +I AD V Sbjct: 80 NDMSQNKEGDLAKIKANVVSEQSLAPIAVEKMHIDKYLVLGKGEELSGGRTKKAILADAV 139 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++I ALY+D G E A V + ++S +D KT LQE+ K P Y + Sbjct: 140 EAVIGALYIDSGYESAERLVLELIIPEIRKVQSDHGSKDYKTLLQEFYQKKTNACPSYSL 199 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +GPDHD F V V++ + +K++AEQ AA K GI Sbjct: 200 VRTTGPDHDRIFYVSVKLGDVVYGPASGKNKKSAEQAAAGVACKALGI 247 >gi|319892231|ref|YP_004149106.1| Ribonuclease III [Staphylococcus pseudintermedius HKU10-03] gi|317161927|gb|ADV05470.1| Ribonuclease III [Staphylococcus pseudintermedius HKU10-03] gi|323464672|gb|ADX76825.1| ribonuclease III [Staphylococcus pseudintermedius ED99] Length = 243 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 5/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 ++ K + + N SL ++A +HSS + + E ERLEFLGD +L L +S L Sbjct: 15 ENFAKKMKALNLTYDNMSLYQQAFSHSSFINDFNMDRTEHNERLEFLGDAVLELTVSRYL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F+ F EGEL+ ++V + A+ ++L I + K S+ ADV Sbjct: 75 FDAFPKLPEGELTKMRANIVCEPSLVVFAQHINLMPLILLGKGEEKTGGRTRPSLVADVF 134 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVT 178 E+ + ALYLD G+E F + D KT+ QE+ H + +Y+V Sbjct: 135 EAFVGALYLDQGLEAVWQFAEAVIFPHVKGRQLIGVVDFKTKFQEYVHQNYLGVIKYRVA 194 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GP H+ FT + ++G A ++G +K+ +EQ AA + Sbjct: 195 KEEGPAHNKTFTSEILLNGEAVSRGEGRTKKESEQKAAEQA 235 >gi|238019508|ref|ZP_04599934.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748] gi|237864207|gb|EEP65497.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748] Length = 245 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 117/227 (51%), Gaps = 8/227 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 L R+ ++ S+L+ A TH+S ++ ++ +RLEFLGD +L L+I L Sbjct: 17 ESLHGLVARLDIPVSDISILDCAFTHTSYANEHKSKHINHNQRLEFLGDAVLDLIIGEYL 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F + EG+L+ + V ++ + V+R L L ++ + R + SI AD Sbjct: 77 FKTYPDMAEGDLTKIKAATVCEDSLASVSRSLQLGQYLLLGHGERASGGNNRNSILADTF 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 ESLI A+Y+ + A FV K+ + ++AL+ GK +D KT LQE+ Y+ Sbjct: 137 ESLIGAIYISTDYQTAMNFVLKHLITYIKQALE-GKRGKDYKTLLQEYVQRDGDKHTVYR 195 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + SGPDH F +VVEI+G+ G SK+ AEQ AA L++ Sbjct: 196 LLSESGPDHAKTFHMVVEINGVTYEAGSGKSKKIAEQHAAQLTLEKL 242 >gi|320104374|ref|YP_004179965.1| RNAse III [Isosphaera pallida ATCC 43644] gi|319751656|gb|ADV63416.1| RNAse III [Isosphaera pallida ATCC 43644] Length = 238 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + ++ E+ IG++F +R LL ALTHSS + S ERLEFLGD +LG+++ LF+ Sbjct: 6 DSELLASCERVIGHSFQDRGLLRAALTHSSRAVHPLASNERLEFLGDSVLGMIVCDTLFH 65 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F AKEG+L+ + +VS +TC+++AR+L L +++ + + + S A+V ES Sbjct: 66 LFPEAKEGDLTRIKSVVVSRQTCTKIARKLGLQNYLLLGKGMGPSSQA-PASTLANVFES 124 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++ A+YLD G E A FV K+ + + + K++LQ++A G TP Y + Sbjct: 125 VVGAIYLDSGFEAARRFVLNNLLPEIESSKNEESQGNYKSQLQQYAQKNHGTTPTYHLLE 184 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDH F ++ I +K+ AEQ AA L Sbjct: 185 EKGPDHRKCFKILARIGSHQFPPAWGQTKKDAEQRAAQNAL 225 >gi|315924201|ref|ZP_07920427.1| ribonuclease III [Pseudoramibacter alactolyticus ATCC 23263] gi|315622603|gb|EFV02558.1| ribonuclease III [Pseudoramibacter alactolyticus ATCC 23263] Length = 229 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 115/222 (51%), Gaps = 7/222 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M AL+ L++ IGY F N++ L +ALTHSS +S +++ ERLE+LGD +L L IS LF Sbjct: 1 MEALK---LQQSIGYIFKNQAYLHEALTHSSHGNS-EKNNERLEYLGDAVLELSISDYLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 HF EG+++ S+V +E+ SQ AR L L +++ + SI + E Sbjct: 57 KHF-DFDEGKMTKLRASIVCSESLSQAARRLHLGNYLHLGKGEVISGGRSRQSILENAFE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A++LD + + +G+ D KT LQE + EY + Sbjct: 116 AMLGAIFLDSDYSTSQKKAIELLSDNIEMAIAGRLTNDYKTALQELIQKQSDHVIEYVLD 175 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP+HD F V + I+G + G +K+ AEQ AA + L Sbjct: 176 KADGPEHDKTFFVTLMINGQMSSNGRGKTKKEAEQQAAKKSL 217 >gi|296393287|ref|YP_003658171.1| ribonuclease III [Segniliparus rotundus DSM 44985] gi|296180434|gb|ADG97340.1| ribonuclease III [Segniliparus rotundus DSM 44985] Length = 338 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 111/220 (50%), Gaps = 9/220 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 L + +G + SL+ ALTH S ++ + E + ERLEFLGD +LGL+++ L+ Sbjct: 105 EELFESLGVTLQD-SLMTLALTHRSWANEHGEVPTNERLEFLGDTVLGLVVTEQLYVTHP 163 Query: 65 SAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +EGEL+ ++VS + +++AR L L ++ + + + SI AD +E+ Sbjct: 164 DKEEGELAKLRANIVSTASLAEIARRLGKGGLGEYLYLGNGEVRTGGKNKDSILADGLEA 223 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTF 179 +I A+++ GIE A V ++ + D KT LQE + P Y+VT Sbjct: 224 VIGAVHIQYGIEKAREVVLALCAPLLARAARLGAGLDWKTSLQELCARRGLRPPVYEVT- 282 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +GPDH+ FT VV I + G +K+ AE AA Sbjct: 283 EAGPDHEKLFTAVVLIEEKSLGTGSGRTKKEAEMKAAGHA 322 >gi|296185386|ref|ZP_06853796.1| ribonuclease III [Clostridium carboxidivorans P7] gi|296050220|gb|EFG89644.1| ribonuclease III [Clostridium carboxidivorans P7] Length = 240 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 116/220 (52%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + LE+++ F ++ LL+ ALTHSS ++ + + ERLEFLGD +L + IS LF ++ Sbjct: 14 FVELEQKLDVCFEDKELLKIALTHSSYANGKKNIKFNERLEFLGDSVLQISISEYLFLNY 73 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EGEL+ R +V + ++A++ DL +IR+S SI AD VE++I Sbjct: 74 SKKTEGELTKRRALIVCENSLYEIAKKWDLGKYIRMSKGEELTGGRERVSILADCVEAII 133 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+Y+D G E A FV +K K+ K D KT+LQE V +Y + Sbjct: 134 AAIYIDAGFEKAKGFVLTNFKDTIEKAIKNKIILDYKTKLQEVMQKNGDVDIQYDLMKYE 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H +F V ++ G SK+ +EQ AA + LK Sbjct: 194 GPPHRRKFYTQVSVNNKVLGNGTGYSKKESEQSAAKKALK 233 >gi|259501533|ref|ZP_05744435.1| ribonuclease III [Lactobacillus iners DSM 13335] gi|302191494|ref|ZP_07267748.1| ribonuclease III [Lactobacillus iners AB-1] gi|309804216|ref|ZP_07698293.1| ribonuclease III [Lactobacillus iners LactinV 11V1-d] gi|309806878|ref|ZP_07700865.1| ribonuclease III [Lactobacillus iners LactinV 03V1-b] gi|309808658|ref|ZP_07702550.1| ribonuclease III [Lactobacillus iners LactinV 01V1-a] gi|325913482|ref|ZP_08175848.1| ribonuclease III [Lactobacillus iners UPII 60-B] gi|259167051|gb|EEW51546.1| ribonuclease III [Lactobacillus iners DSM 13335] gi|308163619|gb|EFO65889.1| ribonuclease III [Lactobacillus iners LactinV 11V1-d] gi|308166744|gb|EFO68936.1| ribonuclease III [Lactobacillus iners LactinV 03V1-b] gi|308168132|gb|EFO70258.1| ribonuclease III [Lactobacillus iners LactinV 01V1-a] gi|325477251|gb|EGC80397.1| ribonuclease III [Lactobacillus iners UPII 60-B] Length = 225 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57 M + + + L+++ F N LLE+ALTHSS S+ +Q ++YE+LEFLGD +L L IS Sbjct: 1 MVSESFKNELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ HF + EGEL+ +++V E SQ A E + +++ K ++ D Sbjct: 61 YLYRHFPNMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLED 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176 V E+ AL+LD G+ F+ + RD KTELQE + +YK Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYK 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + PRFTV + ++G +QG+ SK+AAEQVAA+ LK Sbjct: 181 VIDSD--EAQPRFTVQLIVAGENISQGIGRSKKAAEQVAASVALKN 224 >gi|73662845|ref|YP_301626.1| ribonuclease III [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|90101648|sp|Q49X17|RNC_STAS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|72495360|dbj|BAE18681.1| dsRNA-specific ribonuclease RNase III [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 244 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 100/229 (43%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKR---IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGL 53 M + EK+ + F L ++A +HSS + + + ERLEFLGD +L L Sbjct: 9 MVQTFQNKFEKKMQELNLDFNRVDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLEL 68 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +S LF+ + EG L+ ++V + A ++ L I + K S Sbjct: 69 TVSRYLFDKYPELPEGNLTKMRATIVCEPSLVIFANKIQLNDLILLGKGEEKTGGRTRPS 128 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVT 172 + +D E+ + ALYLD G+E F ++ D KT+ QE+ H + Sbjct: 129 LVSDAFEAFVGALYLDQGLEAVWQFSEQIIFPYVEDDELDGVVDFKTQFQEYVHRQNKGD 188 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y++ GP H FT V + A A+G +K+ +EQ AA K Sbjct: 189 VTYRLINEEGPAHHRLFTSEVILEEDAVAEGKGKTKKESEQKAAERAYK 237 >gi|78356751|ref|YP_388200.1| ribonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|90101625|sp|Q310Z1|RNC_DESDG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|78219156|gb|ABB38505.1| RNAse III [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 229 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 113/221 (51%), Gaps = 5/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62 + L+ + Y FA+ LLE ALTHSS ++ E ERLE+LGD +L L +S LF Sbjct: 2 FEKLQDVLCYRFADVRLLETALTHSSYANERGTEIEHNERLEYLGDAVLELTVSEQLFTR 61 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+L+ LVS + +++AREL L +++ + +S+ +D E++ Sbjct: 62 FPEAREGQLTRMRARLVSKPSLAELARELKLDTYLLLGKGEESQGGRTRSSVLSDAFEAI 121 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A++LDGG AG V + R + +DAK+ LQE F P Y + Sbjct: 122 LGAIFLDGGYAAAGKTVLHVFSSRWPQGAEAARTKDAKSTLQELTQRLFKERPVYTLLGS 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 SGP+H+ F V + + + S + AEQ AA L+ Sbjct: 182 SGPEHEKIFKVRLLLPDGRALETEGQSVKRAEQKAAGLALE 222 >gi|269794452|ref|YP_003313907.1| RNAse III [Sanguibacter keddieii DSM 10542] gi|269096637|gb|ACZ21073.1| RNAse III [Sanguibacter keddieii DSM 10542] Length = 234 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 75/217 (34%), Positives = 103/217 (47%), Gaps = 6/217 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + L + +G + LL +LTH S +H + ERLEFLGD +LGL+ + LF Sbjct: 13 THLLEELGVHL-DPELLVLSLTHRSFAHEAGGIPTNERLEFLGDAVLGLVAAEALFRRHP 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ + VS + VAR L L +I + + SI +D VESLI Sbjct: 72 DRPEGDLAKMRAASVSQRALAAVARRLSLGDYILLGKGESQTRGFDKDSILSDTVESLIG 131 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL G+E A +FV + + D KT LQE A + PEY G Sbjct: 132 AVYLSHGLEEARSFVHRLLDSTLDAAADLGAGLDWKTSLQEAAAERNVGAPEYTSEGE-G 190 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 PDH FT V I G G +K+ AEQ+AA + Sbjct: 191 PDHARIFTAHVIIDGEILGTGQGTAKKHAEQIAAEQA 227 >gi|227872403|ref|ZP_03990750.1| ribonuclease III [Oribacterium sinus F0268] gi|227841763|gb|EEJ52046.1| ribonuclease III [Oribacterium sinus F0268] Length = 241 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLF 60 S LE+ +GY F ++ LL ALTH S S+ + S +RLEFLGD +L L+ STLL+ Sbjct: 10 SLSKLEEDLGYHFQDQKLLLHALTHPSYSNEMGHPKEASNQRLEFLGDAVLELVSSTLLY 69 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + +EG ++ +LV + VA+ L L+S++ + ++ F S+ +D +E Sbjct: 70 HKKPVIQEGRMTKLRAALVCESALAVVAKSLQLSSYLLLGKGEEREGIQFRDSVLSDALE 129 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++I A+YLDGG++ A FV ++ +DAKT LQE+ AK EY + Sbjct: 130 AVIGAIYLDGGMKKAECFVRGKVLS-DIEHKTLFQDAKTMLQEYCTAKRYPL-EYDLLEE 187 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 SGP H + V V+++ G SK+ AEQ AA L++ + T Sbjct: 188 SGPFHQRFYKVSVKVNEEVYGIGEGSSKKKAEQAAAYFALEKIKVET 234 >gi|108762302|ref|YP_631944.1| ribonuclease III [Myxococcus xanthus DK 1622] gi|123074286|sp|Q1D5X9|RNC_MYXXD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|108466182|gb|ABF91367.1| ribonuclease III [Myxococcus xanthus DK 1622] Length = 260 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 6/228 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57 + R LE R+G +F+ +ALTH + + + + +RLEFLGD ++ L +S Sbjct: 12 PSERVQLLESRLGLSFSRMETALEALTHKTYVNETRDKELKDNQRLEFLGDSVVNLAVSH 71 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L EG+L+ +V+ + ++VAR + L + + S+ AD Sbjct: 72 RLMARCPGLPEGDLTKMRARVVNEDGLARVARTIPLGDLLLLGRGELMSGGREKNSVLAD 131 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 +E++ A++L G++ A T VD+Y+ + SG+ R D KT LQE AH + + P Y Sbjct: 132 ALEAVFGAVFLTSGLDAAVTLVDRYFADLLDEVSSGQGRLDYKTLLQEMAHERLKLQPRY 191 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V SGP+H F V + + A A+ SK+ AEQ AA L++ Sbjct: 192 RVVSESGPEHSKVFEVELMLGETAFARATGRSKKEAEQSAAQATLEKL 239 >gi|259417917|ref|ZP_05741836.1| ribonuclease III [Silicibacter sp. TrichCH4B] gi|259346823|gb|EEW58637.1| ribonuclease III [Silicibacter sp. TrichCH4B] Length = 228 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 75/202 (37%), Positives = 115/202 (56%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 + R+G+ F++ LL +ALTH S+S ++ +RLEFLGDR+LGL+++T L H A Sbjct: 9 AFQARLGHEFSSPELLIRALTHPSVSSPNRQDNQRLEFLGDRVLGLVMATALLEHDKHAT 68 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+L+ RFN+LV E C+ VAR++DL + +++ ++ D +E++IAA+Y Sbjct: 69 EGQLAPRFNALVRKEACADVARQIDLGAVLKLGRSEMLSGGRRKQALLGDAMEAVIAAVY 128 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 D G E A + + W +R RD KT LQE+ A+ P Y + R+GPDH+P Sbjct: 129 KDAGFEAAQNVILRLWGKRVGTVEDDARDPKTALQEFVQARRQPPPAYVLIARTGPDHEP 188 Query: 188 RFTVVVEISGLAPAQGMDCSKR 209 FT+ + Q SKR Sbjct: 189 VFTIAARLEDGTEEQATAGSKR 210 >gi|194335354|ref|YP_002017148.1| Ribonuclease III [Pelodictyon phaeoclathratiforme BU-1] gi|194307831|gb|ACF42531.1| Ribonuclease III [Pelodictyon phaeoclathratiforme BU-1] Length = 273 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 114/229 (49%), Gaps = 7/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLI 55 +SA + L++ +G +N L + ALTH S+ H ES +RLEFLGD +LG+LI Sbjct: 39 LSAETVAYLQQLVGEPVSNLPLYQTALTHRSVVHDPATTSLIESNQRLEFLGDSVLGMLI 98 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S LF F ++ EGELS +V++++ + AR L L + + S Sbjct: 99 SEYLFRKFPTSAEGELSSNRAKIVNSKSLAGFARSLCLGDHLILGESADHHKIRSSESAL 158 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTP 173 AD ESLI A+YLD GI+ A FV + + + K+ L E+ + P Sbjct: 159 ADAFESLIGAIYLDKGIKTAFDFVIRSIIEHVNFNTIVAAEHNYKSRLIEYTQSNHLPPP 218 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y V +G +H+ FTV V SG G K+ AEQ+AA E ++R Sbjct: 219 LYTVITETGAEHEKSFTVGVSCSGELLGTGTAQRKKDAEQLAAKEAMER 267 >gi|269957060|ref|YP_003326849.1| ribonuclease III [Xylanimonas cellulosilytica DSM 15894] gi|269305741|gb|ACZ31291.1| ribonuclease III [Xylanimonas cellulosilytica DSM 15894] Length = 239 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 104/221 (47%), Gaps = 7/221 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + L +++G + LL ALTH S +H ERLEFLGD +LG++++ LF Sbjct: 13 TALLEKLGV-PLDPELLVLALTHRSFAHEAGGIPHNERLEFLGDSVLGVVVTEALFRRHP 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ + VS + + VAR L+L S++ + R+ SI +D VE+LI Sbjct: 72 DVSEGELAKMRAATVSQRSLAAVARRLELGSYVLLGKGERRTRGFDKDSILSDTVEALIG 131 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A Y+ G+E A V + + D KT LQE + P Y+V G Sbjct: 132 ATYISHGLEAARELVHRLVDDTLDAAADLGAGLDWKTSLQEACAERGYPAPTYEVDAE-G 190 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P+H F V +G G +K+ AEQ AA + + Sbjct: 191 PEHARAFHAQVT-AGPVLGLGHGTAKKHAEQEAAEQAYRAL 230 >gi|309809559|ref|ZP_07703417.1| ribonuclease III [Lactobacillus iners SPIN 2503V10-D] gi|329921162|ref|ZP_08277684.1| ribonuclease III [Lactobacillus iners SPIN 1401G] gi|308170231|gb|EFO72266.1| ribonuclease III [Lactobacillus iners SPIN 2503V10-D] gi|328934800|gb|EGG31291.1| ribonuclease III [Lactobacillus iners SPIN 1401G] Length = 225 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57 M + + + L+++ F N LLE+ALTHSS S+ +Q ++YE+LEFLGD +L L IS Sbjct: 1 MVSESFKNELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ HF + EGEL+ +++V E SQ A E + +++ K ++ D Sbjct: 61 YLYRHFPNMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLED 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176 V E+ AL+LD G+ F+ + RD KTELQE + +YK Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYK 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + PRFTV + ++G +QG+ SK+AAEQVAA+ LK Sbjct: 181 VIDSD--EAKPRFTVQLIVAGENISQGIGRSKKAAEQVAASVALKN 224 >gi|237785779|ref|YP_002906484.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385] gi|237758691|gb|ACR17941.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385] Length = 246 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 66/201 (32%), Positives = 96/201 (47%), Gaps = 5/201 (2%) Query: 23 LEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 L ALTH S ++ + ERLEFLGD +LGL ++ L+ + E E+S +V+ Sbjct: 43 LRLALTHRSFANENGMLPNNERLEFLGDAVLGLSVAERLYRDYPDRTESEISKMRAGVVN 102 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + VARE+ L + + + SI AD E+++ A+YL+ G + A + Sbjct: 103 MYALADVAREIGLGDHVLLGRGEQLTNGKDKNSILADTTEAMLGAIYLEHGFQTAKDVIL 162 Query: 141 KYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + +K R + D KTEL E + PEY T SGP HDP FT V + G Sbjct: 163 RLFKSRIESAPTVGLHMDWKTELLEKIAGRGLGEPEYNTT-ISGPAHDPHFTSTVSLQGK 221 Query: 199 APAQGMDCSKRAAEQVAAAEV 219 G +K+ AE AA E Sbjct: 222 VWGHGEGHTKKEAEHHAAREA 242 >gi|317506412|ref|ZP_07964217.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974] gi|316255292|gb|EFV14557.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974] Length = 347 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 109/220 (49%), Gaps = 9/220 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + L IG SLL ALTH S ++ + E + ERLEFLGD +LGL+I+ L+ Sbjct: 114 AELFDSIGVTLQ-ESLLTLALTHRSWANEHGEVPTNERLEFLGDTVLGLVITEQLYVTHP 172 Query: 65 SAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +EGEL+ ++VS + +++AR L L ++ + + + SI AD +E+ Sbjct: 173 DKEEGELAKLRANIVSTISLAEIARRLGKGGLGEYLYLGNGEMRTGGKNKDSILADGLEA 232 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A+++ GIE A V ++ + D KT LQE + P Y+V Sbjct: 233 LLGAVHIQYGIEKAREVVLHLCAPLLARAARLGAGLDWKTSLQELCARRGLRPPVYEV-A 291 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +GPDH+ FT VV I + G +K+ AE AA Sbjct: 292 EAGPDHEKLFTAVVLIEEKSLGTGSGRTKKEAEMKAAGHA 331 >gi|157803302|ref|YP_001491851.1| ribonuclease III [Rickettsia canadensis str. McKiel] gi|189043341|sp|A8EXI3|RNC_RICCK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157784565|gb|ABV73066.1| ribonuclease III [Rickettsia canadensis str. McKiel] Length = 227 Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 118/227 (51%), Gaps = 7/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 MS+ ++ LEK +GY+F N+ LL +AL+H S+ ++ + YERLEFLGD +L L+I+ Sbjct: 1 MSS--FNELEKLLGYSFKNKELLIEALSHPSLRQHHEYKDNKDYERLEFLGDAVLNLVIT 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +LF++F S EG L+ + LV ET V +L L +I ++ + Sbjct: 59 KILFSNFASYNEGNLAKIRSYLVCKETICMVGAKLALKDYIIMTYGEEVAGGRDNPNNIE 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + E+LIAA+YLD IE + + W + D KT LQEWA A P Y Sbjct: 119 NATEALIAAIYLDSNIETTHNIIGQLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYC 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + R G H FTV+V++ G+ S + AE+ AA +L R Sbjct: 179 LIKREGAAHSSTFTVLVKVKDYEQ-IGIGYSIKEAEKNAARSLLHRL 224 >gi|330684635|gb|EGG96340.1| ribonuclease III [Staphylococcus epidermidis VCU121] Length = 235 Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 5/212 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ + N L ++A +HSS + + + ERLEFLGD +L L +S LF+ E Sbjct: 24 LGFEYNNIELYQQAFSHSSFINDFNMDRLDHNERLEFLGDAVLELTVSRYLFDKHPDLPE 83 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ ++V + A ++ L I + K S+ +D E+ + ALYL Sbjct: 84 GNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYL 143 Query: 129 DGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 D G+++ F +K D KT+ QE+ H + Y++ GP H Sbjct: 144 DQGLDIVWDFAEKIIFPYVEDDELDGVVDFKTQFQEFVHRQNKGDVTYRLIKEEGPAHHR 203 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 FT V + A A+G +K+ +EQ AA Sbjct: 204 LFTSEVILEKQAVAEGQGKTKKESEQKAAERA 235 >gi|294011699|ref|YP_003545159.1| ribonuclease III [Sphingobium japonicum UT26S] gi|292675029|dbj|BAI96547.1| ribonuclease III [Sphingobium japonicum UT26S] Length = 237 Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 92/215 (42%), Positives = 126/215 (58%), Gaps = 3/215 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ IG+A +R+ +ALTH S + +YERLEFLGDRILGLLI+ +++ F E Sbjct: 24 LKALIGHAPKDRTAFHQALTHGSA---HAVNYERLEFLGDRILGLLIAEWVYDRFSGEPE 80 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS RFN+LVS ETC++VAR + + + + R D + ++ DV+E+LI ALYL Sbjct: 81 GKLSRRFNALVSGETCAEVARGAGVPAHLILGKQARDDGAADSDNVLGDVMEALIGALYL 140 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +GG+E A T V + W R + K+ LQEWA A PEY +T RSGP H + Sbjct: 141 EGGLEEARTLVRRLWADRVDTQASAPKHPKSALQEWAAANKRKPPEYAMTDRSGPHHALK 200 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 FTV V I G A SK+ AE AA +L + Sbjct: 201 FTVTVSIKGAGEASATGGSKQEAETAAAKALLDKL 235 >gi|261377909|ref|ZP_05982482.1| ribonuclease III [Neisseria cinerea ATCC 14685] gi|269145767|gb|EEZ72185.1| ribonuclease III [Neisseria cinerea ATCC 14685] Length = 239 Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 114/219 (52%), Gaps = 6/219 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GY F + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HTAIQKKLGYEFRDISLLRQALTHRSC---HAKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+D+ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEIAAEMDVGEGLYLGTGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + +R ++ +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFSERVKRADFQNQEKDGKTALQEALQARRFALPKYRIEEQIGH 187 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 +D F + ++ L + S++AAEQ AA E L+ Sbjct: 188 ANDSMFVISCDLGELGFVCRAKGTSRKAAEQSAAKEALQ 226 >gi|159029006|emb|CAO87467.1| rnc [Microcystis aeruginosa PCC 7806] Length = 226 Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 71/216 (32%), Positives = 102/216 (47%), Gaps = 9/216 (4%) Query: 16 AFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N LL +ALTH S + E + ERLEFLGD IL L+ LL+ + + E EL+ Sbjct: 6 PFQNALLLTQALTHRSYVNEQSELTENNERLEFLGDAILAFLVGELLYQKYPAMNEAELT 65 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 ++LV E +Q+ E+ L +R+ KD ++ AD E++I A YLD G+ Sbjct: 66 RLRSNLVKEEQLAQLGIEIGLGELMRLGKGAIKDRGRSNPTLLADTFEAIIGAYYLDSGL 125 Query: 133 EVAGTFVDKYWKQRA------LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 ++ + A DAK Q+WA A F PEY + +GP H Sbjct: 126 NAVKNYLHGLFIPVASHLVSQQSESPSFIDAKNLFQQWALANFASNPEYAIIDVTGPPHA 185 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 FT V ++ L G K+ A + AA + LKR Sbjct: 186 REFTAEVRVNNLLYGTGKGKRKQDATKAAAEDALKR 221 >gi|19703497|ref|NP_603059.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|22654053|sp|Q8RGX3|RNC_FUSNN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|19713585|gb|AAL94358.1| Ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 234 Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 117/227 (51%), Gaps = 7/227 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ Sbjct: 3 NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQTNERLELLGDAVLDLIVAEYLY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + +A EG ++ +VS ++++R++ + F+ +S SI AD E Sbjct: 63 KSYKNASEGPIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILADSFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+Y+D ++ A F + KQ ++ + D K+ LQE+ +F P Y++ Sbjct: 123 AILGAVYIDSNLDEARVFALSHIKQYIDHIEENEDILDFKSILQEYVQKEFKTVPTYELV 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDH F + V + + + +K+ AEQ++A + + G+ Sbjct: 183 AERGPDHMKEFEIQVIVGNYKE-KAVARNKKKAEQLSAKALCIKLGV 228 >gi|104774253|ref|YP_619233.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423334|emb|CAI98181.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 231 Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 111/231 (48%), Gaps = 10/231 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ L+++ G F + LLE+A THSS + +YE+LEFLGD +L + Sbjct: 1 MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTFGNYEKLEFLGDAVLEFTV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ HF EGEL+ +++V E S+VA + I + K ++ Sbjct: 61 SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTP 173 DV E+ AL+LD GIE F+ + + +G RD KT+LQE VT Sbjct: 121 EDVFEAFNGALFLDQGIEAVEKFLSQTVYP-LIAAGYFTPSRDFKTDLQELLQQNGSVTI 179 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 EY+V S P F V V + G A G +K+ AEQ AA+ L+ Sbjct: 180 EYRVLNESQQP--PHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 228 >gi|213964554|ref|ZP_03392754.1| ribonuclease III [Corynebacterium amycolatum SK46] gi|213952747|gb|EEB64129.1| ribonuclease III [Corynebacterium amycolatum SK46] Length = 242 Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 6/222 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 A+ ++ L ++G SL + ALTH S ++ + ERLEFLGD +LG+ ++ L Sbjct: 18 EAVDHAPLLDKLGVELPEESL-KLALTHRSFANENGMLTNNERLEFLGDAVLGVCVAEEL 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F E ++S +V+ + +AR + L I + + + SI AD Sbjct: 77 YRRFPDRAEQDISKMRAGVVNMYALADLARSIGLGEHILLGRGEKATGGADKHSILADTT 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+L+ A+YL G EVA V + + Q + RD KT LQE AK EY V Sbjct: 137 EALLGAIYLQHGFEVARETVLRLFNQMIDDAPTESRGRDWKTLLQERLAAKQLPAAEYTV 196 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +GPDHD F V V + G+ G +K+ AE AA + Sbjct: 197 -RTTGPDHDLTFYVDVLVDGVVKGSGTGATKKEAEMHAAHQA 237 >gi|223986082|ref|ZP_03636108.1| hypothetical protein HOLDEFILI_03416 [Holdemania filiformis DSM 12042] gi|223961955|gb|EEF66441.1| hypothetical protein HOLDEFILI_03416 [Holdemania filiformis DSM 12042] Length = 247 Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 67/210 (31%), Positives = 101/210 (48%), Gaps = 5/210 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65 LE R G + L+E+A HSS + +++ ERLEF+GD +L L +S LF Sbjct: 7 LEAR-GIHCKDSRLIEQAFVHSSYVNEHKQLKHDNERLEFMGDAVLQLWVSDKLFRLDPP 65 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG ++ LV E + AR+L L SF+++ K SI AD+ E+++ A Sbjct: 66 LDEGHMTTFRAQLVCEEALAIYARQLQLNSFLKLGVGEEKTGGRERDSIIADMFEAMLGA 125 Query: 126 LYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LY D G+E + + D KT+LQE+ + T Y+V +GP Sbjct: 126 LYEDSGMEPIDNILTEVITPHLSHPEEPIIVDYKTKLQEYVQSDSRKTVTYEVINTTGPS 185 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + P F V V++ G+ G SK+ AEQ Sbjct: 186 NKPEFEVQVKLEGIILGTGKGNSKKKAEQK 215 >gi|314923852|gb|EFS87683.1| ribonuclease III [Propionibacterium acnes HL001PA1] gi|314966091|gb|EFT10190.1| ribonuclease III [Propionibacterium acnes HL082PA2] gi|314981862|gb|EFT25955.1| ribonuclease III [Propionibacterium acnes HL110PA3] gi|315090788|gb|EFT62764.1| ribonuclease III [Propionibacterium acnes HL110PA4] gi|315094941|gb|EFT66917.1| ribonuclease III [Propionibacterium acnes HL060PA1] gi|327328032|gb|EGE69801.1| ribonuclease III [Propionibacterium acnes HL103PA1] Length = 265 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 38 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + ++AR+L + I++ + TSI AD E+L+ Sbjct: 97 PDKPEGQLAKLRSAVVSTVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ S Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 216 GPDHNRRYCARANVDGRLYAAYTGHNKKEAEQGAARRA 253 >gi|325068495|ref|ZP_08127168.1| ribonuclease III [Actinomyces oris K20] Length = 264 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 70/196 (35%), Positives = 96/196 (48%), Gaps = 7/196 (3%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL+ ALTH S +H + ERLEFLGD +LG++++ L+ EG+L+ Sbjct: 26 DAQLLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHPEVPEGQLAKMRA 85 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + VS + VAR+L L FI++ SI +D VE+LI A YL G+E Sbjct: 86 ATVSEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETR 145 Query: 137 TFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 T V + R L S + R D KT LQE P Y+VT +GPDH FT Sbjct: 146 TVVTRLV-SRFLDSARTRGAGLDWKTSLQELTAVHQLGNPAYEVTG-TGPDHQRVFTASA 203 Query: 194 EISGLAPAQGMDCSKR 209 + G QG SK+ Sbjct: 204 IVDGEVLGQGTGSSKK 219 >gi|309805468|ref|ZP_07699513.1| ribonuclease III [Lactobacillus iners LactinV 09V1-c] gi|312872453|ref|ZP_07732522.1| ribonuclease III [Lactobacillus iners LEAF 2062A-h1] gi|312874441|ref|ZP_07734471.1| ribonuclease III [Lactobacillus iners LEAF 2052A-d] gi|312874574|ref|ZP_07734599.1| ribonuclease III [Lactobacillus iners LEAF 2053A-b] gi|315653376|ref|ZP_07906298.1| ribonuclease III [Lactobacillus iners ATCC 55195] gi|325911776|ref|ZP_08174180.1| ribonuclease III [Lactobacillus iners UPII 143-D] gi|308165119|gb|EFO67357.1| ribonuclease III [Lactobacillus iners LactinV 09V1-c] gi|311089965|gb|EFQ48384.1| ribonuclease III [Lactobacillus iners LEAF 2053A-b] gi|311090053|gb|EFQ48467.1| ribonuclease III [Lactobacillus iners LEAF 2052A-d] gi|311092035|gb|EFQ50410.1| ribonuclease III [Lactobacillus iners LEAF 2062A-h1] gi|315489301|gb|EFU78941.1| ribonuclease III [Lactobacillus iners ATCC 55195] gi|325476282|gb|EGC79444.1| ribonuclease III [Lactobacillus iners UPII 143-D] Length = 225 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57 M + + + L+++ F N LLE+ALTHSS S+ +Q ++YE+LEFLGD +L L IS Sbjct: 1 MVSESFKNELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ HF + EGEL+ +++V E SQ A E + +++ K ++ D Sbjct: 61 YLYRHFPNMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLED 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176 V E+ AL+LD G+ F+ + RD KTELQE + +YK Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYK 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + P+FTV + ++G +QG+ SK+AAEQVAA+ LK Sbjct: 181 VIDSD--EAQPKFTVQLIVAGENISQGIGRSKKAAEQVAASVALKN 224 >gi|325126041|gb|ADY85371.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 231 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 111/231 (48%), Gaps = 10/231 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ L+++ G F + LLE+A THSS + +YE+LEFLGD +L + Sbjct: 1 MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ HF EGEL+ +++V E S+VA + I + K ++ Sbjct: 61 SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTP 173 DV E+ AL+LD GIE F+ + + +G RD KT+LQE VT Sbjct: 121 EDVFEAFNGALFLDQGIEAVEKFLSQTVYP-LIAAGYFTPSRDFKTDLQELLQQNGSVTI 179 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 EY+V S P F V V + G A G +K+ AEQ AA+ L+ Sbjct: 180 EYRVLNESQQP--PHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 228 >gi|314936605|ref|ZP_07843952.1| ribonuclease III [Staphylococcus hominis subsp. hominis C80] gi|313655224|gb|EFS18969.1| ribonuclease III [Staphylococcus hominis subsp. hominis C80] Length = 243 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ K +G ++ + + ++A +HSS + + ERLEFLGD +L L +S LF Sbjct: 15 QFDKKMKMLGLSYTHVDVYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + + EG L+ ++V + A +++L I + K S+ +D E Sbjct: 75 DKYPNLPEGNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKTGGRTRPSLVSDAFE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G+EV F K + D KT+ QE+ H++ Y + Sbjct: 135 AFIGALYLDQGLEVVWKFAQKVIFPYVEHNELIGVVDFKTQFQEYIHSQSKGDVTYHLIK 194 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H FT V + A A+G +K+ +EQ AA + Sbjct: 195 EEGPAHHRLFTSEVILENKAIAKGQGRTKKESEQKAAESAYHKL 238 >gi|228474955|ref|ZP_04059683.1| ribonuclease III [Staphylococcus hominis SK119] gi|228270940|gb|EEK12328.1| ribonuclease III [Staphylococcus hominis SK119] Length = 243 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ K +G ++ + + ++A +HSS + + ERLEFLGD +L L +S LF Sbjct: 15 QFDKKMKMLGLSYTHLDVYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + + EG L+ ++V + A +++L I + K S+ +D E Sbjct: 75 DKYPNLPEGNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKTGGRTRPSLVSDAFE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G+EV F K + D KT+ QE+ H++ Y + Sbjct: 135 AFIGALYLDQGLEVVWKFAQKVIFPYVEHNELIGVVDFKTQFQEYIHSQSKGDVTYHLIK 194 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H FT V + A A+G +K+ +EQ AA + Sbjct: 195 EEGPAHHRLFTSEVILENKAIAKGQGRTKKESEQKAAESAYHKL 238 >gi|325127806|gb|EGC50714.1| ribonuclease III [Neisseria meningitidis N1568] Length = 239 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 113/219 (51%), Gaps = 6/219 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++KR+GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HAAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + R + +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 187 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 +D F V ++ L + S++AAEQ AA E L+ Sbjct: 188 ANDSMFVVSCDLGELGFVCRAKGTSRKAAEQSAAKEALQ 226 >gi|332670942|ref|YP_004453950.1| ribonuclease III [Cellulomonas fimi ATCC 484] gi|332339980|gb|AEE46563.1| ribonuclease III [Cellulomonas fimi ATCC 484] Length = 258 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 106/220 (48%), Gaps = 6/220 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65 L +++G + LL ALTH S +H + ERLEFLGD +LGL+++ L+ Sbjct: 7 RLVEKLGVHL-DPELLVLALTHRSFAHEAGGIPTNERLEFLGDTVLGLVVTESLYRRHPE 65 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG L+ + VS + VARELDL +++ + + SI +D +E+L A Sbjct: 66 QPEGALAKMRAATVSQRALAGVARELDLGAYVLLGKGELATGGADKDSILSDTLEALFGA 125 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL G+E A VD++ A + D KT LQE + A P Y V GP Sbjct: 126 VYLAHGLETARVVVDRFVGPTLDAAAALGAGLDWKTSLQELSAALGLGAPSYDVVGE-GP 184 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH FT I+G G +K+ AEQ AA + + Sbjct: 185 DHARTFTARAVIAGEPRGAGSGPAKKLAEQHAAEDAYRAL 224 >gi|163733862|ref|ZP_02141304.1| ribonuclease III [Roseobacter litoralis Och 149] gi|161392973|gb|EDQ17300.1| ribonuclease III [Roseobacter litoralis Och 149] Length = 228 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 121/207 (58%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +KR+G+ F SLL +A+TH+S+S + + +R+EFLGDR+LGL+++ L Sbjct: 4 SAELKAFQKRLGHQFNQPSLLAQAVTHASMSTANRGDNQRMEFLGDRVLGLVMAEALLGL 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + A EG+L+ RFN+LV ETC+ VARE+DL + +R+ ++ D +E++ Sbjct: 64 DNDATEGQLAPRFNALVRKETCADVAREIDLGAVLRLGRSEMLSGGRRKQALLGDAIEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+Y D G + A + + W R + + RDAKT LQEWA A+ P Y+ R G Sbjct: 124 IAAVYQDAGFDAARALILRLWGDRVHEVEEDARDAKTALQEWAQARGLQPPHYEEVHRKG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDH P FT+ V++S Q SKR Sbjct: 184 PDHAPIFTISVQLSTGETDQATAGSKR 210 >gi|163783627|ref|ZP_02178616.1| RNase III [Hydrogenivirga sp. 128-5-R1-1] gi|159881120|gb|EDP74635.1| RNase III [Hydrogenivirga sp. 128-5-R1-1] Length = 222 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 119/224 (53%), Gaps = 13/224 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFD 64 + +E+RIGY F N+ LL++A TH S + YE LEFLGD +L +I +L F Sbjct: 2 FEEVEERIGYTFKNKDLLKQAFTHVSYARDAGVSHYEILEFLGDALLNFIIVDILVKEFP 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ L+S E +++A+ELDL +I +S SI DV E+L A Sbjct: 62 EKREGALASLKAYLISEEFFNELAQELDLPRYILMSRG------KKNVSIIGDVFEALWA 115 Query: 125 ALYLDGGIE--VAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 A+Y+D G + + ++ +K R ++ S + R+D KT LQE ++ P Y+V Sbjct: 116 AVYVDSGRDCNLVKELFNRLFKDRIIETIRSHRIRKDYKTMLQEITQKRWRERPHYRVIS 175 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP+H FTV I G A G SK+ AEQ AA ++++ Sbjct: 176 VEGPEHAKTFTVESSIKG-VSAVGRGKSKKEAEQEAAKRLVEKL 218 >gi|313884921|ref|ZP_07818673.1| ribonuclease III [Eremococcus coleocola ACS-139-V-Col8] gi|312619612|gb|EFR31049.1| ribonuclease III [Eremococcus coleocola ACS-139-V-Col8] Length = 233 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 94/206 (45%), Gaps = 5/206 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 ++K G F N +L+ A H+S ++ + + ERLEFLGD +L L+ S LFN + Sbjct: 8 IQKNTGITFTNIEILQTAFCHTSYANEHAKEKLKDNERLEFLGDAVLELITSDFLFNTYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ LV + + VAR+ L I++ F SI +D E+ + Sbjct: 68 DKPEGQLTRMRAQLVKEPSLALVARKYQLDQLIQLGKGEEASGGRFRDSIVSDAFEAFLG 127 Query: 125 ALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLD G F+ + K D KT QE ++ V +Y++ GP Sbjct: 128 AIYLDQGFARVTEFLQQALLKPHLQIIKVINIDYKTLFQEKVQSQGPVNIDYRLIKEEGP 187 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 H F V + + +QG SK+ Sbjct: 188 AHHRLFVVALYLDDQLVSQGQGYSKK 213 >gi|257453602|ref|ZP_05618892.1| ribonuclease III [Enhydrobacter aerosaccus SK60] gi|257449060|gb|EEV24013.1| ribonuclease III [Enhydrobacter aerosaccus SK60] Length = 275 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 111/234 (47%), Gaps = 18/234 (7%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + L ++GY F N +L AL H S + +YERLEFLGD +LG++I+ LF + Sbjct: 35 QLTALFYQMGYQFDNVNLPIMALMHRSFDSEH--NYERLEFLGDALLGVIIAEALFLRYP 92 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS SLV ET +A++L+L+ ++ + RK SI AD VE+LI Sbjct: 93 DYNEGRLSRLRASLVREETLVIIAKQLNLSDYLILGVGERKGGGRQRASILADSVEALIG 152 Query: 125 ALYLDG-GIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD + V +++ +K K +DAK+ LQE A P Y+VT Sbjct: 153 AIYLDSQNFDTVKACVLAWFEDLFEKVKEQKVLKDAKSRLQELLQAHQLALPRYEVTETI 212 Query: 182 GPDHDPRFTVVVEIS-------------GLAPAQGMDCSKRAAEQVAAAEVLKR 222 G + F V ++ A S+R AEQ A +L + Sbjct: 213 GNAPNQIFVVSCQVEIIFDNKTAKPIAPTQALVTAQGESRRIAEQRCAEAMLAK 266 >gi|289550987|ref|YP_003471891.1| Ribonuclease III [Staphylococcus lugdunensis HKU09-01] gi|315658482|ref|ZP_07911354.1| ribonuclease III [Staphylococcus lugdunensis M23590] gi|289180519|gb|ADC87764.1| Ribonuclease III [Staphylococcus lugdunensis HKU09-01] gi|315496811|gb|EFU85134.1| ribonuclease III [Staphylococcus lugdunensis M23590] Length = 243 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 5/220 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 R+ +G F N L ++A +HSS + + E ERLEFLGD +L + +S LF Sbjct: 16 RFEQKMNELGIHFDNIKLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLEVTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG L+ ++V + A ++ L I + K S+ +D E Sbjct: 76 DKHPNLPEGNLTKMRATIVCEPSLVIFANKIQLNQLILLGKGEEKTGGRTRPSLISDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179 + + ALYLD G+ F +K D KT+ QE+ H++ Y++ Sbjct: 136 AFVGALYLDQGLGAVWHFAEKVIFPYVEDDELIGVVDFKTQFQEFVHSQNKGDVMYRLVK 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GP H FT V + A A G +K+ +EQ AA Sbjct: 196 EEGPAHHRLFTSEVILEQQAIAHGQGKTKKESEQKAAERA 235 >gi|254511570|ref|ZP_05123637.1| ribonuclease III [Rhodobacteraceae bacterium KLH11] gi|221535281|gb|EEE38269.1| ribonuclease III [Rhodobacteraceae bacterium KLH11] Length = 225 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 114/206 (55%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + ++R+GY F++ LL ++LTH S+S S + +RLEFLGDR+LGL+++T L Sbjct: 4 SAEIKAFQQRLGYEFSDPELLVRSLTHGSVSSSTRPDNQRLEFLGDRVLGLVMATALLEA 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A EG+L+ RFN+LV E C+ VAR++DL + +++ ++ D +E++ Sbjct: 64 DKKASEGQLAPRFNALVRKEACADVARQIDLGAVLKLGRSEMLSGGRRKQALLGDAMEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+Y D G E A + W R RDAKT LQEWA A+ P Y R+G Sbjct: 124 IAAIYRDAGFEAARDVILALWGDRIHMVEADARDAKTSLQEWAQARGQKPPAYVEVKRTG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSK 208 PDH P FT+ + AQ SK Sbjct: 184 PDHAPVFTIAARLQDGTEAQATAGSK 209 >gi|288575033|ref|ZP_06393390.1| ribonuclease III [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570774|gb|EFC92331.1| ribonuclease III [Dethiosulfovibrio peptidovorans DSM 11002] Length = 244 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 119/224 (53%), Gaps = 8/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNH 62 S ++ R+GY+F + LL +ALTHSS +H + ERLEFLGD +L L ST LF Sbjct: 9 NLSLIQDRLGYSFTDIELLREALTHSSYAHESGLRSWNERLEFLGDAVLELATSTRLFRA 68 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV-CSFMTSIQADVVES 121 EG L+ LV E A L L+ +RV+ LRK ++S+ AD +E+ Sbjct: 69 MKDMDEGGLTRLRARLVRKEALLTWAEALGLSGILRVNRGLRKKGEGCDLSSMHADAIEA 128 Query: 122 LIAALYLDGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + A+Y+DGG ++A + V++Y K ++ G D K+ELQ+ K PEY+ Sbjct: 129 IFGAVYMDGGYDMAESVVNRYLDFLFEKGDYIQDGNSSIDPKSELQQILQIKGEPLPEYR 188 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + R GP H P F V + +SG+ + G S + AE AA + L Sbjct: 189 IMSREGPPHSPSFEVELYVSGVLLSSGRGRSIKEAEVQAALDGL 232 >gi|326773636|ref|ZP_08232919.1| ribonuclease III [Actinomyces viscosus C505] gi|326636866|gb|EGE37769.1| ribonuclease III [Actinomyces viscosus C505] Length = 264 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 70/196 (35%), Positives = 96/196 (48%), Gaps = 7/196 (3%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL+ ALTH S +H + ERLEFLGD +LG++++ L+ EG+L+ Sbjct: 26 DAHLLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHPEVPEGQLAKMRA 85 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + VS + VAR+L L FI++ SI +D VE+LI A YL G+E Sbjct: 86 ATVSEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETR 145 Query: 137 TFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 T V + R L S + R D KT LQE P Y+VT +GPDH FT Sbjct: 146 TVVTRLV-SRFLDSARTRGAGLDWKTSLQELTAVHQLGNPAYEVTG-TGPDHQRVFTASA 203 Query: 194 EISGLAPAQGMDCSKR 209 + G QG SK+ Sbjct: 204 IVDGEVLGQGTGSSKK 219 >gi|119717505|ref|YP_924470.1| ribonuclease III [Nocardioides sp. JS614] gi|119538166|gb|ABL82783.1| RNAse III [Nocardioides sp. JS614] Length = 276 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 5/209 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 Y+ L +G + LLE+ALTH S ++ + ERLEFLGD +LG++++ L+ Sbjct: 34 NYAELRAALGDPTLDPELLERALTHRSFAYENGGLPTNERLEFLGDSVLGVVVTETLYLK 93 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG L+ ++V+A ++V R + + +++ SI +D VE++ Sbjct: 94 HPDLSEGRLAKLRAAVVNARALAEVGRRIGVGEHVKLGRGEESTGGRHKASILSDTVEAV 153 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++L GG + V + + + D KT LQE + PEY V Sbjct: 154 IGAVHLSGGFTTSAVVVHRLFDPLIEAASALGAGLDWKTSLQELSAEHGLGVPEY-VIED 212 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDH FT V + G+ SK+ Sbjct: 213 DGPDHMKTFTAQVRVGEGLYGNGVGRSKK 241 >gi|93005197|ref|YP_579634.1| ribonuclease III [Psychrobacter cryohalolentis K5] gi|92392875|gb|ABE74150.1| RNAse III [Psychrobacter cryohalolentis K5] Length = 265 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 115/224 (51%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 R + L +++GY F + SL + ALTH S +++YERLEFLGD +LG+++ L++ + Sbjct: 33 RLAVLTRKLGYVFNDLSLPKLALTHRSF--DSKKNYERLEFLGDALLGMIVGEALYHRYP 90 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG L+ +LV E+ +A+ L+L++ + + RK SI AD VESLI Sbjct: 91 TQNEGRLTRMRATLVRQESLVIIAQNLELSNQLILGVGERKGGGRNRASILADAVESLIG 150 Query: 125 ALYLDG-GIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD + + V ++ + K +DAK+ LQEW +K P Y++ Sbjct: 151 AIYLDSQDMNITRECVLSWYGDLIDNVNDQKALKDAKSRLQEWLQSKQFDLPHYELMETR 210 Query: 182 GPDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G F V +++ S+R AEQ AA ++ + Sbjct: 211 GNAPHQIFVVRCQVNILNCPDITESGESRRIAEQKAAELMINQL 254 >gi|119476421|ref|ZP_01616772.1| ribonuclease III [marine gamma proteobacterium HTCC2143] gi|119450285|gb|EAW31520.1| ribonuclease III [marine gamma proteobacterium HTCC2143] Length = 229 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 110/207 (53%), Gaps = 6/207 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + L +++G+ F + SL++ AL+H S+ ++ ERLEFLGD I+ L++ LF F Sbjct: 8 HHLLIQKLGHEFNDPSLVDLALSHRSVG---AKNNERLEFLGDSIVNFLMAEALFQKFPE 64 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EGELS LV ET +++A+E + + + K SI AD VE+LI A Sbjct: 65 CREGELSQMRAQLVKGETLAEIAKEFSVGEHLNLGPGELKSGGYRRESILADAVEALIGA 124 Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGG+ V ++++ R + +DAKT LQEW A+ P+Y + SG Sbjct: 125 IYLDGGMAACNEHVPRWFESRLDLISPRNSNKDAKTRLQEWLQARKMPLPQYVLINTSGS 184 Query: 184 DHDPRFTVVVEISG-LAPAQGMDCSKR 209 DH +FT+ +I G S+R Sbjct: 185 DHQQQFTIECDIHHLQQRFTGDGSSRR 211 >gi|225621561|ref|YP_002722820.1| ribonuclease III [Brachyspira hyodysenteriae WA1] gi|225216382|gb|ACN85116.1| ribonuclease III [Brachyspira hyodysenteriae WA1] Length = 243 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 6/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNH 62 + + + Y F N+ L +A+TH + ++ ++ +RLEFLGD +L L+IS LF Sbjct: 7 LNNCQTALKYEFRNKDHLLEAITHRTYANESKKKMKYNQRLEFLGDSVLSLIISDYLFKK 66 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + S+KEG LS +SLVS ++ + +++EL L F+ + + ++ D+ E++ Sbjct: 67 YSSSKEGLLSKVKSSLVSQKSLADISKELKLGDFLLLGHGEEASGGRYRDNMLEDLFEAI 126 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A+YLD GI A FV + +K+R L F +D KT QE K +P YK Sbjct: 127 VGAIYLDSGITSASKFVMRAYKERLKNLDIENFDKDYKTIFQELIQKKHKTSPIYKSYEY 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +H+ F V ++ A G+ SK+ AE AA + L + Sbjct: 187 YDNNHE-MFKSEVYVNDKNFALGVGKSKKEAETNAAKKALDK 227 >gi|163846691|ref|YP_001634735.1| ribonuclease III [Chloroflexus aurantiacus J-10-fl] gi|222524496|ref|YP_002568967.1| Ribonuclease III [Chloroflexus sp. Y-400-fl] gi|254807243|sp|A9WJ69|RNC_CHLAA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807245|sp|B9LB70|RNC_CHLSY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|163667980|gb|ABY34346.1| Ribonuclease III [Chloroflexus aurantiacus J-10-fl] gi|222448375|gb|ACM52641.1| Ribonuclease III [Chloroflexus sp. Y-400-fl] Length = 244 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 63/209 (30%), Positives = 101/209 (48%), Gaps = 7/209 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS------YQESYERLEFLGDRILGLLISTL 58 R + LE+ IG F +R+LL+ A H S+ + + ERLEFLGD +L + +T Sbjct: 4 RLAELERAIGITFRDRTLLQTAFMHRSLFNEQPHLLNHLTDNERLEFLGDSVLHFVTTTW 63 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF F E L+ +LVS + ++ A + +L + +S + AD+ Sbjct: 64 LFETFPDQDEATLTNWRAALVSTKGLAECAAQFNLGQYAYLSRGEDNPGGRSRQKLLADL 123 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+L+ A+YLD G+E A F+ +W+ R + D T LQE A+F P+Y + Sbjct: 124 FEALVGAIYLDQGLETARAFIVPFWQARIEQIIHIDLDPTTRLQELMQARFKQLPDYSIE 183 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 GP+H + + V ++G G S Sbjct: 184 EERGPEHQREYVMAVTVAGRK-FTGSGSS 211 >gi|91789485|ref|YP_550437.1| ribonuclease III [Polaromonas sp. JS666] gi|91698710|gb|ABE45539.1| RNAse III [Polaromonas sp. JS666] Length = 233 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 73/215 (33%), Positives = 109/215 (50%), Gaps = 6/215 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S+ L+KR+ + F+N LL +ALTH S S + ER+EFLGD +L L ++ LL+ Sbjct: 7 SSPDLLALQKRLQHEFSNPKLLAQALTHRSFS---ADHNERIEFLGDSVLNLAVAGLLYE 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG+LS +LV +T ++A L L +R+ + SI AD +E+ Sbjct: 64 QLSELPEGDLSRVRANLVKQDTLHKLAVTLGLPEMLRLGEGEARSGGQKRPSILADALEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +I A+YLD G + A V + ++ + +D KTELQEW + P Y+V Sbjct: 124 VIGAVYLDAGFDKADQLVRRLFRNVEINPQMQAIGKDPKTELQEWLQGRKMNLPIYRVVG 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 G H F V EI+ A+ G+ S+RA EQ Sbjct: 184 TMGAAHKQTFDVECEITEYGRAERGIGGSRRAGEQ 218 >gi|152989964|ref|YP_001355686.1| ribonuclease III [Nitratiruptor sp. SB155-2] gi|189043328|sp|A6Q1H0|RNC_NITSB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|151421825|dbj|BAF69329.1| ribonuclease III [Nitratiruptor sp. SB155-2] Length = 226 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 69/205 (33%), Positives = 110/205 (53%), Gaps = 4/205 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK++GY+F ++ LL++ALTH S + ERLEFLGD +L L++ LF F Sbjct: 3 QLEEFEKKLGYSFEDKKLLKEALTHKSYKSPV--NNERLEFLGDAVLDLVVGEYLFKKFP 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EGELS SLV+ E +++A++LD+ +I +S + S+ ++ E+++ Sbjct: 61 KANEGELSKLRASLVNEEGFAKLAQKLDIGKYIFISQAEENNQGRTKPSLLSNAFEAVMG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL+ G+E K ++ + +D KT LQE+ A +G+TP YK+ SG Sbjct: 121 AIYLEKGLEKVRELSLKLLEEAYPKIDLDSLFKDFKTALQEFTQAHYGITPTYKLLGSSG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCS 207 PDH F V V + + S Sbjct: 181 PDHKKEFEVAVLLHEETISTAKGRS 205 >gi|304440214|ref|ZP_07400104.1| ribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371263|gb|EFM24879.1| ribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640] Length = 226 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 12/228 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M L+Y I Y F N L ALTHSS S+ +E S ERLEFLGD +L L++ Sbjct: 1 MKNLKYL----NISYEFKNEELFRTALTHSSYSNENKEKCKYSNERLEFLGDAVLDLVVG 56 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 F F +EG+LS+ +V + +++A++++L I + K+ SI A Sbjct: 57 EYFFKQF-KVREGQLSMMRAKVVKESSLAKIAKKINLGEMILLGKGEEKNNGREKLSILA 115 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D +E+LI A+YLD +VA F+ + K+ + D K+ LQE E Sbjct: 116 DSLEALIGAIYLDSSFDVAKEFILDIMSEELEKAHESSYLVDYKSRLQEVCQMAHL-NIE 174 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y + +GP + F V + G +G S + +EQ+AA + L + Sbjct: 175 YVLEKTNGPLNSRVFYSKVIVDGKVFGRGEGNSIKKSEQMAAKDALSK 222 >gi|282854597|ref|ZP_06263932.1| ribonuclease III [Propionibacterium acnes J139] gi|282582179|gb|EFB87561.1| ribonuclease III [Propionibacterium acnes J139] Length = 246 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 19 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 77 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + ++AR+L + I++ + TSI AD E+L+ Sbjct: 78 PDKPEGQLAKLRSAVVSTVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 137 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ S Sbjct: 138 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 196 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 197 GPDHNRRYCARANVDGRLYAAYTGHNKKEAEQGAARRA 234 >gi|325294757|ref|YP_004281271.1| ribonuclease 3 [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065205|gb|ADY73212.1| Ribonuclease 3 [Desulfurobacterium thermolithotrophum DSM 11699] Length = 234 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 91/232 (39%), Positives = 124/232 (53%), Gaps = 10/232 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTL 58 M + LE++I Y F ++ LL+KALTH S S +E+YE LEFLGD ++GL++S Sbjct: 1 MEKKSFEELERKINYFFKDKKLLKKALTHKSFSFEKDSEENYEVLEFLGDAVIGLIVSEE 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L F + EGELS LVS + S++A+ +DL S+I + +SI DV Sbjct: 61 LIKRFPTKTEGELSQIRAFLVSEPSLSELAKTVDLGSYIYLGKGEHLSGGREKSSILCDV 120 Query: 119 VESLIAALYLDGGIEVA-----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 ESL A+YLDGG E A F+ K W L+ +D K+ LQE +F V P Sbjct: 121 FESLFGAIYLDGGFENAKEVFKRNFLMKLW--EILEEAVTYKDFKSFLQEVTQKEFKVIP 178 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 Y V GP+H+ FTV + L SKR+AEQ AA E+LK G+ Sbjct: 179 SYSVIKAEGPEHEKIFTVECRVKDLKTVS-TGKSKRSAEQQAAKEMLKVLGV 229 >gi|38234119|ref|NP_939886.1| ribonuclease III [Corynebacterium diphtheriae NCTC 13129] gi|81564732|sp|Q6NGH3|RNC_CORDI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|38200381|emb|CAE50069.1| ribonuclease III [Corynebacterium diphtheriae] Length = 249 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 110/222 (49%), Gaps = 6/222 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 ++ + L +G R LL ALTH S ++ + ERLEFLGD +LGL ++ L Sbjct: 19 ESVDHQPLIDALGVDIP-RELLVLALTHRSFANENGMLPNNERLEFLGDSVLGLSVAGQL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S+ E ++S S+VS + +ARE++L I + + SI AD Sbjct: 78 YQQYTSSPESDISKMRASIVSRYGLADIAREINLGQHILLGKGEQLHDGRSKDSILADTT 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177 E+L+ A+YL G E+A V + +K + + +D KT LQE + P Y Sbjct: 138 EALLGAIYLAHGFEIARDTVLRLFKHKIDTASATGLHQDWKTTLQERLAERNLEMPTYTS 197 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T +GP+H+ FT V + G G+ +K+ AEQ AA + Sbjct: 198 T-VTGPEHEQTFTAEVAVHGTVLGTGVGTNKKLAEQAAAHKA 238 >gi|313807892|gb|EFS46373.1| ribonuclease III [Propionibacterium acnes HL087PA2] gi|313825876|gb|EFS63590.1| ribonuclease III [Propionibacterium acnes HL063PA1] gi|314986461|gb|EFT30553.1| ribonuclease III [Propionibacterium acnes HL005PA2] gi|314990820|gb|EFT34911.1| ribonuclease III [Propionibacterium acnes HL005PA3] gi|315083515|gb|EFT55491.1| ribonuclease III [Propionibacterium acnes HL027PA2] gi|327329789|gb|EGE71545.1| ribonuclease III [Propionibacterium acnes HL096PA3] gi|327446474|gb|EGE93128.1| ribonuclease III [Propionibacterium acnes HL013PA2] gi|328752230|gb|EGF65846.1| ribonuclease III [Propionibacterium acnes HL020PA1] Length = 265 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 38 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + Q+AR+L + I++ + TSI AD E+L+ Sbjct: 97 PDKPEGQLAKLRSAVVSTVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ S Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253 >gi|238026617|ref|YP_002910848.1| ribonuclease III [Burkholderia glumae BGR1] gi|237875811|gb|ACR28144.1| Ribonuclease III [Burkholderia glumae BGR1] Length = 427 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MSQSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L++A +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNIADGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|149200806|ref|ZP_01877781.1| Ribonuclease III [Roseovarius sp. TM1035] gi|149145139|gb|EDM33165.1| Ribonuclease III [Roseovarius sp. TM1035] Length = 227 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 117/206 (56%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + R+G+ F N +LL +ALTHSS++ ++ +RLEFLGDR+LGL+++ L + Sbjct: 4 SADIKAFQARLGHEFTNAALLVRALTHSSMATPNRDDNQRLEFLGDRVLGLVMAEALLSQ 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A EG+L+ RFN+LV E C+ VARE+DL +++ ++ D +E++ Sbjct: 64 DQGATEGQLAPRFNALVRKEACADVAREIDLGGVLKLGRSEMLSGGRRKEALLGDAMEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YLD G E A V + W R + RDAKT LQEWA A+ P+Y R G Sbjct: 124 IAAVYLDAGFETARGVVLRLWGARLGAVKEDARDAKTSLQEWAQARGLPPPDYVELARKG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSK 208 PDH P FT+ ++ A+ SK Sbjct: 184 PDHAPIFTICAQLKSGQRAEATAGSK 209 >gi|116514343|ref|YP_813249.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093658|gb|ABJ58811.1| RNAse III [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 231 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 111/231 (48%), Gaps = 10/231 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ L+++ G F + LLE+A THSS + +YE+LEFLGD +L + Sbjct: 1 MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYLNENPGKTLGNYEKLEFLGDAVLEFTV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ HF EGEL+ +++V E S+VA + I + K ++ Sbjct: 61 SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTP 173 DV E+ AL+LD GIE F+ + + +G RD KT+LQE VT Sbjct: 121 EDVFEAFNGALFLDQGIEAVEKFLSQTVYP-LIAAGYFTPSRDFKTDLQELLQQNGSVTI 179 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 EY+V S P F V V + G A G +K+ AEQ AA+ L+ Sbjct: 180 EYRVLNESQQP--PHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 228 >gi|323342032|ref|ZP_08082265.1| ribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464457|gb|EFY09650.1| ribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414] Length = 226 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 68/209 (32%), Positives = 105/209 (50%), Gaps = 4/209 (1%) Query: 19 NRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 N+ L+ A HSS + +E ERLEF+GD +L + +S LF H D EG++++ Sbjct: 16 NKDLINNAFIHSSYVNEAEELLEDNERLEFMGDAVLQICVSERLFKHQDHFNEGDMTLYR 75 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 LV + +Q + +L L ++ + K+ SI AD+ ES I ALYLD GI+ Sbjct: 76 AKLVCEDALAQYSLKLKLNDYLMLGMGEEKNGGRVRVSIIADLFESFIGALYLDSGIDSV 135 Query: 136 GTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 +D + D KT+LQE+ + + Y+V GP + P F VVV+ Sbjct: 136 NRVLDSVMNDAFNELESLSITDYKTKLQEYIQSDSRKSVSYEVINVVGPSNAPEFEVVVK 195 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + L QG SK+ AEQ+AA + ++ Sbjct: 196 LDELIFGQGKGLSKKKAEQMAAKDAFEKL 224 >gi|313763647|gb|EFS35011.1| ribonuclease III [Propionibacterium acnes HL013PA1] gi|313773586|gb|EFS39552.1| ribonuclease III [Propionibacterium acnes HL074PA1] gi|313794040|gb|EFS42064.1| ribonuclease III [Propionibacterium acnes HL110PA1] gi|313801428|gb|EFS42679.1| ribonuclease III [Propionibacterium acnes HL110PA2] gi|313811637|gb|EFS49351.1| ribonuclease III [Propionibacterium acnes HL083PA1] gi|313813554|gb|EFS51268.1| ribonuclease III [Propionibacterium acnes HL025PA1] gi|313816825|gb|EFS54539.1| ribonuclease III [Propionibacterium acnes HL059PA1] gi|313829556|gb|EFS67270.1| ribonuclease III [Propionibacterium acnes HL063PA2] gi|313831378|gb|EFS69092.1| ribonuclease III [Propionibacterium acnes HL007PA1] gi|313834990|gb|EFS72704.1| ribonuclease III [Propionibacterium acnes HL056PA1] gi|313839852|gb|EFS77566.1| ribonuclease III [Propionibacterium acnes HL086PA1] gi|314914649|gb|EFS78480.1| ribonuclease III [Propionibacterium acnes HL005PA4] gi|314919238|gb|EFS83069.1| ribonuclease III [Propionibacterium acnes HL050PA1] gi|314920852|gb|EFS84683.1| ribonuclease III [Propionibacterium acnes HL050PA3] gi|314930530|gb|EFS94361.1| ribonuclease III [Propionibacterium acnes HL067PA1] gi|314957411|gb|EFT01514.1| ribonuclease III [Propionibacterium acnes HL002PA1] gi|314963605|gb|EFT07705.1| ribonuclease III [Propionibacterium acnes HL082PA1] gi|314968563|gb|EFT12661.1| ribonuclease III [Propionibacterium acnes HL037PA1] gi|314974253|gb|EFT18349.1| ribonuclease III [Propionibacterium acnes HL053PA1] gi|314976742|gb|EFT20837.1| ribonuclease III [Propionibacterium acnes HL045PA1] gi|314984443|gb|EFT28535.1| ribonuclease III [Propionibacterium acnes HL005PA1] gi|315079459|gb|EFT51452.1| ribonuclease III [Propionibacterium acnes HL053PA2] gi|315081314|gb|EFT53290.1| ribonuclease III [Propionibacterium acnes HL078PA1] gi|315095393|gb|EFT67369.1| ribonuclease III [Propionibacterium acnes HL038PA1] gi|315099274|gb|EFT71250.1| ribonuclease III [Propionibacterium acnes HL059PA2] gi|315100492|gb|EFT72468.1| ribonuclease III [Propionibacterium acnes HL046PA1] gi|315109074|gb|EFT81050.1| ribonuclease III [Propionibacterium acnes HL030PA2] gi|327328345|gb|EGE70107.1| ribonuclease III [Propionibacterium acnes HL096PA2] gi|327334306|gb|EGE76020.1| ribonuclease III [Propionibacterium acnes HL097PA1] gi|327444129|gb|EGE90783.1| ribonuclease III [Propionibacterium acnes HL043PA2] gi|327444991|gb|EGE91645.1| ribonuclease III [Propionibacterium acnes HL043PA1] gi|327451940|gb|EGE98594.1| ribonuclease III [Propionibacterium acnes HL092PA1] gi|327455025|gb|EGF01680.1| ribonuclease III [Propionibacterium acnes HL087PA3] gi|327457687|gb|EGF04342.1| ribonuclease III [Propionibacterium acnes HL083PA2] gi|328755143|gb|EGF68759.1| ribonuclease III [Propionibacterium acnes HL087PA1] gi|328758079|gb|EGF71695.1| ribonuclease III [Propionibacterium acnes HL025PA2] gi|328760097|gb|EGF73676.1| ribonuclease III [Propionibacterium acnes HL099PA1] Length = 265 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 38 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + Q+AR+L + I++ + TSI AD E+L+ Sbjct: 97 PDKPEGQLAKLRSAVVSTVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ S Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253 >gi|145593838|ref|YP_001158135.1| ribonuclease III [Salinispora tropica CNB-440] gi|145303175|gb|ABP53757.1| RNAse III [Salinispora tropica CNB-440] Length = 252 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 69/209 (33%), Positives = 106/209 (50%), Gaps = 9/209 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65 LE G A + LLE+ALTH S ++ + ERLEFLGD +LG++I+T LF++ Sbjct: 13 HLEAAFGVAL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPD 71 Query: 66 AKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+L+ S+V+ ++VAR L L ++ + SI AD +E+L Sbjct: 72 LPEGQLAKLRASVVNMRALAEVARGLGPTGLGPYLLLGKGEESTGGRDKASILADTLEAL 131 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A+YL+ G+E T + + + +S D KT LQE A+ PEY++ Sbjct: 132 LGAIYLESGLETVATVIHRLFDPLMAESAGRGAALDWKTSLQELTAAQGLGVPEYRIEG- 190 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 +GPDH FT V ++G SK+ Sbjct: 191 TGPDHLKTFTAWVVVAGRRYGGAEGRSKK 219 >gi|81428322|ref|YP_395322.1| ribonuclease (RNase III) [Lactobacillus sakei subsp. sakei 23K] gi|90101628|sp|Q38XR8|RNC_LACSS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|78609964|emb|CAI55011.1| Ribonuclease (RNase III) [Lactobacillus sakei subsp. sakei 23K] Length = 230 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 61/213 (28%), Positives = 106/213 (49%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M A S L R G F N +LL++A THSS + ++E ERLEFLGD ++ + +S Sbjct: 1 MDAALVSELRARYGIEFNNLALLDEAFTHSSYVNEHRELGLRDNERLEFLGDAVMEITVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+L+ ++V ++ S ++E +IR+ K+ ++ Sbjct: 61 EYLYKKYPDWPEGKLTRLRAAIVCTKSFSSFSKEAHFDRYIRLGKGEEKNGARARATLLE 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPE 174 D+ E+ AL+LD G + FV + + +++G+F + D KT LQE+ + + Sbjct: 121 DLFEAFNGALFLDQGRDAVVDFVSQVIFPK-IEAGEFSDQTDYKTNLQEFLQQDGEIEID 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 Y++ GP HD +F V V + G+ + Sbjct: 180 YQLLAEVGPSHDRQFEVDVLVGDRVLGSGVGRN 212 >gi|313683639|ref|YP_004061377.1| RNAase iii [Sulfuricurvum kujiense DSM 16994] gi|313156499|gb|ADR35177.1| RNAse III [Sulfuricurvum kujiense DSM 16994] Length = 226 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 103/207 (49%), Gaps = 4/207 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L++R+GY F N+ LL +ALTH S Y + ERLEFLGD +L L++ L+ F Sbjct: 3 NLQALQERLGYTFQNKELLIEALTHKSYKQPY--NNERLEFLGDAVLDLIVGEYLYKKFR 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS SLV+ + +A L+L I +S+ + +S+ ++ E+++ Sbjct: 61 GYDEGKLSKMRASLVNEGGFTSLANHLNLGEHIFLSNAEENNSGRTKSSLLSNAFEAVMG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL+ G+ + + +D KT LQE A +G TPEY++ G Sbjct: 121 AMYLETGLGKVQEITVSLLEHVHPDISLDSLFKDYKTSLQELTQAHYGTTPEYQLIAAHG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDH F V V I G A SK+ Sbjct: 181 PDHKKEFEVAVIIDGKRYASAQGKSKK 207 >gi|315104262|gb|EFT76238.1| ribonuclease III [Propionibacterium acnes HL050PA2] gi|315106730|gb|EFT78706.1| ribonuclease III [Propionibacterium acnes HL030PA1] Length = 265 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 38 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + ++AR+L + I++ + TSI AD E+L+ Sbjct: 97 PDKPEGQLAKLRSAVVSTVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ S Sbjct: 157 GAVELSAGLPNVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253 >gi|313836649|gb|EFS74363.1| ribonuclease III [Propionibacterium acnes HL037PA2] gi|314928156|gb|EFS91987.1| ribonuclease III [Propionibacterium acnes HL044PA1] gi|314972155|gb|EFT16252.1| ribonuclease III [Propionibacterium acnes HL037PA3] gi|328907982|gb|EGG27742.1| ribonuclease III [Propionibacterium sp. P08] Length = 259 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + TL + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 32 FLTLLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 90 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + Q+AR L + +++ + TSI AD E+L+ Sbjct: 91 PDKPEGQLAKLRSAVVSTVSLGQLARRLGIGPQVKLGRGEERTGGHDKTSILADTTEALL 150 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ A V + ++ + D KT LQE+ P Y++ S Sbjct: 151 GAVELSSGLPDALRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 209 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 210 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 247 >gi|313819677|gb|EFS57391.1| ribonuclease III [Propionibacterium acnes HL046PA2] gi|313822217|gb|EFS59931.1| ribonuclease III [Propionibacterium acnes HL036PA1] gi|313823550|gb|EFS61264.1| ribonuclease III [Propionibacterium acnes HL036PA2] gi|314924611|gb|EFS88442.1| ribonuclease III [Propionibacterium acnes HL036PA3] gi|314962025|gb|EFT06126.1| ribonuclease III [Propionibacterium acnes HL002PA2] gi|315087196|gb|EFT59172.1| ribonuclease III [Propionibacterium acnes HL002PA3] Length = 265 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 38 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + Q+AR+L + I++ + TSI AD E+L+ Sbjct: 97 PDKPEGQLAKLRSAVVSTVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ S Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253 >gi|332970079|gb|EGK09076.1| ribonuclease III [Kingella kingae ATCC 23330] Length = 241 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 73/218 (33%), Positives = 115/218 (52%), Gaps = 6/218 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S+L+ ++GY F + L++ALTH S + ++YERLEF+GD IL +I+ +LF F + Sbjct: 11 SSLQTKLGYIFKQPTWLQQALTHRSA---HSQNYERLEFVGDAILDYVITLMLFEAFPNL 67 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG LSV LV T ++VAREL L + + K SI AD +E++ AA+ Sbjct: 68 PEGRLSVLRTHLVKEATLAEVARELGLGKALILGVGELKSGGYDRASILADALEAIFAAI 127 Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D + A + + + +R ++ + +D KT LQE A TP+Y++ ++G Sbjct: 128 RFDADLPTAERVIRQLFAERVQQIQVQQPDKDHKTRLQEALQAHRLPTPKYRIERQTGEG 187 Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 D F V ++ L S+RAAEQ A + L+ Sbjct: 188 SDSHFDVSCDLGELGHITYASGSSRRAAEQECAKQALQ 225 >gi|159036823|ref|YP_001536076.1| ribonuclease III [Salinispora arenicola CNS-205] gi|157915658|gb|ABV97085.1| Ribonuclease III [Salinispora arenicola CNS-205] Length = 252 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 9/209 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65 LE G A + LLE+ALTH S ++ + ERLEFLGD +LG++I+T LF++ Sbjct: 13 HLEAAFGVAL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPD 71 Query: 66 AKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+L+ S+V+ ++VAR L L ++ + SI AD +E+L Sbjct: 72 LPEGQLAKLRASVVNMRALAEVARALGPTGLGPYLLLGKGEETTGGRDKASILADTLEAL 131 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A+YL G++ A T + + + S D KT LQE A+ PEY++ Sbjct: 132 LGAIYLQCGLDTAATVIHRLFDPLMADSAGRGAALDWKTSLQELTAAQGLGVPEYRIEG- 190 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 +GPDH FT V ++G SK+ Sbjct: 191 TGPDHLKTFTAWVVVAGQRYGGAEGRSKK 219 >gi|193211801|ref|YP_001997754.1| Ribonuclease III [Chlorobaculum parvum NCIB 8327] gi|193085278|gb|ACF10554.1| Ribonuclease III [Chlorobaculum parvum NCIB 8327] Length = 276 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 110/231 (47%), Gaps = 8/231 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLL 54 ++A S LE G + R + ALTH S+ H +Q ES +RLEFLGD +L LL Sbjct: 34 LAAATLSHLEHLTGRPCSRRQIYRIALTHRSLLHDHQGESERPESNQRLEFLGDAVLDLL 93 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 IS LF + + EG LS +V+ + + AREL L + + S Sbjct: 94 ISEHLFRLYPESDEGHLSSNRAKIVNRKALAAFARELKLGEHLIIGESANLQKIRTSDSA 153 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVT 172 AD E+L+ A+YLD G++ A F+ + + + + K+ L E++ + Sbjct: 154 LADAFEALVGAIYLDQGLDGAKRFIMNHVITMVDLNRIVEAEFNYKSRLIEFSQSHQLPQ 213 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P Y V G +H+ F + V + + +G K+ AEQ+AA E +KR Sbjct: 214 PVYTVVAEEGAEHEKTFVIEVSCNDIPLGKGTAPRKKDAEQLAAREAMKRL 264 >gi|223937314|ref|ZP_03629220.1| Ribonuclease III [bacterium Ellin514] gi|223894099|gb|EEF60554.1| Ribonuclease III [bacterium Ellin514] Length = 231 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 5/210 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61 + L+ +GYAF LL+ ALTH S++H + + +RLEFLGD +L L+++ L++ Sbjct: 3 DLNNLQTALGYAFRKIELLQLALTHPSVAHEQRTPVQHNQRLEFLGDAVLQLVLTHELYS 62 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG L+ LV+ ++ R L+L + + +S S AD E+ Sbjct: 63 KFPDFGEGPLTKARAKLVNRRALAEQGRALNLGAHLILSRGEEAHGGRLRPSALADTFEA 122 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A++LDGG E F+ + + + + K ELQE AK P+Y V Sbjct: 123 LLGAIFLDGGFEAVEKFLLARFHDMLAEISALPALENPKGELQELLQAKSSEAPQYNVVS 182 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SGPDHD F +V+ +G+ A G SK+ Sbjct: 183 TSGPDHDRVFECIVQHNGVELAHGRGKSKK 212 >gi|114775465|ref|ZP_01451033.1| ribonuclease III [Mariprofundus ferrooxydans PV-1] gi|114553576|gb|EAU55957.1| ribonuclease III [Mariprofundus ferrooxydans PV-1] Length = 229 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 106/220 (48%), Gaps = 3/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFD 64 L++ IGY F N +LL++ALTH S S ERLEFLGD +LGL+++ L F Sbjct: 8 LQQLQQVIGYRFNNPALLKRALTHCSALRSAVSGDLERLEFLGDAVLGLVVAEYLHQSFP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +LV ++ VA + L++ + V R + SI A+ VE++I Sbjct: 68 EEPEGQLSRMRANLVCRDSLLVVASDWRLSACLIVGDGERGEYGIKSPSIVANAVEAVIG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++ + G + + V W+ G+ RDAK+ LQE K PEY + R G Sbjct: 128 AVFEESGWDASRRVVLTAWRPMLDDIGRVDPRDAKSRLQELTQGKGWGLPEYVLVDR-GV 186 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + PRF + G K+ AE AA + + Sbjct: 187 GYQPRFEATCSVQEKVVGHGSGERKKLAEIAAAEQAWSKL 226 >gi|146318845|ref|YP_001198557.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33] gi|145689651|gb|ABP90157.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33] Length = 196 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 65/196 (33%), Positives = 90/196 (45%), Gaps = 3/196 (1%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 SI+ ERLEFLGD +L L+IS L+ + EGE+S ++ V E+ + +R Sbjct: 2 SIALLKISHNERLEFLGDAVLQLMISKYLYQKYPDRPEGEMSKLRSTFVREESLAGFSRA 61 Query: 91 LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 F+R+ K +I D E+ + AL LD G + F+ K R L+ Sbjct: 62 CGFDRFLRLGKGEEKSGGRNRDTILGDAFEAFLGALLLDKGEKTVEEFIHKVMIPR-LEK 120 Query: 151 GKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 G F R D KT LQE + Y+V SGP HD F V V +G SK Sbjct: 121 GNFERVTDYKTALQEILQVNGEIAISYQVIAESGPAHDKTFEVEVSADQRVIGRGRGRSK 180 Query: 209 RAAEQVAAAEVLKREG 224 + AEQ AA ++ G Sbjct: 181 KLAEQAAAKNAVEARG 196 >gi|332977456|gb|EGK14231.1| ribonuclease III [Psychrobacter sp. 1501(2011)] Length = 273 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 117/224 (52%), Gaps = 7/224 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++L+K +GY F + SL + ALTH S + +YERLEFLGD +LG++I L+ + + Sbjct: 40 LASLQKVLGYTFKDTSLAKLALTHRSF--DGKINYERLEFLGDALLGMIIGEALYYQYPN 97 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG L+ +LV E+ VA++L+L+S + + RK SI AD VESLI A Sbjct: 98 QNEGRLTRMRATLVRQESLVIVAQKLNLSSHLILGVGERKGGGRERASILADTVESLIGA 157 Query: 126 LYLDG-GIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLD ++V V ++ + + + +DAK+ LQEW P+Y++ G Sbjct: 158 IYLDSQSVDVVKACVLDWFAELINNVNDQRVLKDAKSRLQEWLQGHKYELPKYELLETQG 217 Query: 183 PDHDPRFTV--VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + F V VE+ P S+R AEQ A +++ + Sbjct: 218 NAPNQIFIVRCEVEVPHSTPIIESGESRRIAEQKTAEKMINQLN 261 >gi|166365898|ref|YP_001658171.1| ribonuclease III [Microcystis aeruginosa NIES-843] gi|166088271|dbj|BAG02979.1| ribonuclease III [Microcystis aeruginosa NIES-843] Length = 226 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 71/216 (32%), Positives = 102/216 (47%), Gaps = 9/216 (4%) Query: 16 AFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N LL +ALTH S + E + ERLEFLGD IL L+ LL+ + + E EL+ Sbjct: 6 PFQNALLLTQALTHRSYVNEQSELTENNERLEFLGDAILAFLVGELLYQKYPAMNEAELT 65 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 ++LV E +Q+ E+ L +R+ KD ++ AD E++I A YLD G+ Sbjct: 66 RLRSNLVKEEQLAQLGLEIGLGELMRLGKGAIKDRGRSNPTLLADTFEAIIGAYYLDSGL 125 Query: 133 EVAGTFVDKYWKQRA------LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 ++ + A DAK Q+WA A F PEY + +GP H Sbjct: 126 NAVKNYLHGLFIPVASHLVSQQSESSSFIDAKNLFQQWALANFASNPEYAIIDVTGPPHA 185 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 FT V ++ L G K+ A + AA + LKR Sbjct: 186 REFTAEVRVNNLLYGTGKGKRKQDATKAAAEDALKR 221 >gi|289450366|ref|YP_003474966.1| ribonuclease III [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184913|gb|ADC91338.1| ribonuclease III [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 245 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 106/225 (47%), Gaps = 7/225 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 + E +IGY+F N+ L +ALTHS+ S+ + E ERLEFLGD +LGL + L Sbjct: 13 EQICNFENKIGYSFKNKKYLIEALTHSTYSYEHSMYGLECNERLEFLGDLVLGLTVGNHL 72 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F + EG+LS +LV T + VA +L + + S AD Sbjct: 73 FKTFPTYPEGKLSKLKAALVCEPTLAIVAHNWELDKVLLLGKGEETSGGRNKPSSLADAT 132 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFG-VTPEYK 176 E+++ A++ D A T + + + + +G D K+ L E K+ + Sbjct: 133 EAVLGAVFCDADFVAAATVILRALEPLIQEAVAGNLVYDYKSALLEKIQTKYHSSQLRFV 192 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + +GP H P F + + + A + SK+ AEQ+AA + L+ Sbjct: 193 LLDETGPAHSPSFKMGIYLVNDLLATAIGSSKKEAEQIAAKQALQ 237 >gi|307292852|ref|ZP_07572698.1| ribonuclease III [Sphingobium chlorophenolicum L-1] gi|306880918|gb|EFN12134.1| ribonuclease III [Sphingobium chlorophenolicum L-1] Length = 227 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 89/215 (41%), Positives = 123/215 (57%), Gaps = 3/215 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L IG + + +ALTH S + +YERLEFLGDRILGLLI+ +++ F + E Sbjct: 14 LTALIGRKPKDPAAFTQALTHGSAN---AVNYERLEFLGDRILGLLIAEWVYDRFSTEPE 70 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS RFN+LVS ETC++VAR + + + + R D + ++ DV+E+LI ALYL Sbjct: 71 GKLSRRFNALVSGETCAEVARSAGVPTHLILGKQARDDGAADSDNVLGDVMEALIGALYL 130 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +GG++ A T V + W R + K+ LQEWA A PEY +T RSGP H + Sbjct: 131 EGGLKEARTLVRRLWADRVDTQASAPKHPKSALQEWAAANKRKPPEYAMTDRSGPHHALK 190 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 FTV V I G A SK+ AE AA +L + Sbjct: 191 FTVTVSIKGAGEASATGGSKQEAETAAAKALLDKL 225 >gi|119489560|ref|ZP_01622320.1| Ribonuclease III [Lyngbya sp. PCC 8106] gi|119454472|gb|EAW35620.1| Ribonuclease III [Lyngbya sp. PCC 8106] Length = 395 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 104/234 (44%), Gaps = 13/234 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLL 59 R L + I F + LL++ALTH + + + E+LEFLGD +L L L Sbjct: 164 ERLKELLETI--PFQDARLLQRALTHRTYVFEHPTKTEGDNEQLEFLGDSVLNFLAGDYL 221 Query: 60 FNHFDSA-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 + + EGEL+ R +S V +Q A +L+L ++++ +S+ ++ Sbjct: 222 YEQYSHRRDEGELTRRRSSFVDNSQFAQFAVKLNLGEWMQLGKGEELQGGRTKSSLLSNT 281 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQ------RALKSGKFRRDAKTELQEWAHAKFGVT 172 E+++ A YLD GIE + +++ + D K LQ A Sbjct: 282 FEAVMGAYYLDSGIEAVRELIKPFFESVDTATVEDSIPQQTLIDVKGRLQNLAQTNDLPI 341 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 PEY V G DH FTV V I+ +G K+ AE+ AA + L+ G+ Sbjct: 342 PEYYVVSEMGKDHAKIFTVEVRINRKFYGRGTGNKKKEAEKQAAIDALQCLGLL 395 >gi|314978880|gb|EFT22974.1| ribonuclease III [Propionibacterium acnes HL072PA2] gi|315089369|gb|EFT61345.1| ribonuclease III [Propionibacterium acnes HL072PA1] Length = 265 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 38 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + +AR+L + I++ + TSI AD E+L+ Sbjct: 97 PDKPEGQLAKLRSAVVSTVSLGLLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ S Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253 >gi|126726095|ref|ZP_01741937.1| ribonuclease III [Rhodobacterales bacterium HTCC2150] gi|126705299|gb|EBA04390.1| ribonuclease III [Rhodobacterales bacterium HTCC2150] Length = 228 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 117/206 (56%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 A RIG+ F+ LL +A+TH+SIS + + +RLEFLGDRILGL+++ L N Sbjct: 4 AADLVAFSARIGHEFSKPELLVEAVTHASISSANRSDNQRLEFLGDRILGLVMAEALLNA 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 SA EG L+ RFN+LV ETC+ VARE+DL + +++ ++ D +E++ Sbjct: 64 DTSANEGTLAPRFNALVRKETCADVAREIDLGAVLKLGRSEMISGGRRKLALLGDAMEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YLD G E A F+ + W +R + RD K+ LQEWA A+ P YK+ R G Sbjct: 124 IAAVYLDAGFEAARDFILRSWGERINAVDEDARDPKSSLQEWAQARKMPPPVYKLLRREG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSK 208 DH P FT+ + A+ SK Sbjct: 184 ADHAPMFTIAAILDSGQQAEAKAPSK 209 >gi|78189616|ref|YP_379954.1| ribonuclease III [Chlorobium chlorochromatii CaD3] gi|90101617|sp|Q3AQ14|RNC_CHLCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|78171815|gb|ABB28911.1| RNAse III [Chlorobium chlorochromatii CaD3] Length = 248 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 113/229 (49%), Gaps = 8/229 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSS-----ISHSYQESYERLEFLGDRILGLLI 55 M + L+ IG N L + ALTH S + ES +RLEFLGD +LGLLI Sbjct: 1 MPPETLAYLQTLIGSLDGNARLYQTALTHRSVIGNTALSHHNESNQRLEFLGDAVLGLLI 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S LF +F ++ EG+LS +V++++ + AR + L + + S Sbjct: 61 SHFLFQNFPASAEGDLSKTRAKIVNSKSLACFARSIGLGEHLLLGESAAHYNIRDSESAL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTP 173 AD ESLI A+YLD G++ A FVDK+ S ++ K+ L E++ A P Sbjct: 121 ADAFESLIGAIYLDKGLDAAYGFVDKHIIHHQSFSAIVASEQNYKSCLIEYSQAHHVAAP 180 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y V G +HD FTV V + + G K+ AEQ+AA E ++R Sbjct: 181 VYTVIAEHGAEHDKEFTVEVSCNNIK-GCGTARRKKDAEQLAAKEAMER 228 >gi|305681508|ref|ZP_07404315.1| ribonuclease III [Corynebacterium matruchotii ATCC 14266] gi|305659713|gb|EFM49213.1| ribonuclease III [Corynebacterium matruchotii ATCC 14266] Length = 259 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 108/224 (48%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 + + ++ L +G + +L ALTH S ++ + ERLEFLGD +LGL ++ L Sbjct: 19 AKVDHAPLLAALGVDLPH-DILTLALTHRSFANENGMLPNNERLEFLGDAVLGLSVAGKL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F + + E ++S S+VS + +ARE+ L +I + SI AD Sbjct: 78 FEQYPTRPESDISKMRASIVSRYGLADIAREIGLGQYILLGKGELLTDGRNKDSILADTT 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+L+ A+Y G ++A V + + + ++ +D KT LQE P Y+ Sbjct: 138 EALLGAIYRIHGFDIARDVVLRLFAHKISHAQATALHQDWKTSLQERLAEYKLPMPVYEA 197 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T GP+H+ FT V + G +G +K+ AEQ A + L+ Sbjct: 198 TSV-GPEHEQVFTASVNVLGRIIGEGTGTNKKLAEQAGAHQALE 240 >gi|71064909|ref|YP_263636.1| ribonuclease III [Psychrobacter arcticus 273-4] gi|90101639|sp|Q4FUV6|RNC_PSYA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71037894|gb|AAZ18202.1| RNAse III [Psychrobacter arcticus 273-4] Length = 265 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 115/224 (51%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 R + L +++GY F + SL + ALTH S +++YERLEFLGD +LG+++ L++ + Sbjct: 33 RLAVLTRKLGYVFNDLSLAKLALTHRSF--DSKKNYERLEFLGDALLGMIVGEALYHRYP 90 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG L+ +LV E+ +A+ L+L++ + + RK SI AD VESLI Sbjct: 91 TQNEGRLTRMRATLVRQESLVIIAQNLELSNQLILGVGERKGGGRNRASILADAVESLIG 150 Query: 125 ALYLDG-GIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD + + V ++ + K +DAK+ LQEW +K P Y++ Sbjct: 151 AIYLDSQDMNITRECVLSWYGDLIDNVNDQKALKDAKSRLQEWLQSKQFDLPHYELMETR 210 Query: 182 GPDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G F V +++ S+R AEQ AA ++ + Sbjct: 211 GNAPHQLFVVRCQVNIINCPDITESGESRRIAEQKAAELMINQL 254 >gi|289426387|ref|ZP_06428130.1| ribonuclease III [Propionibacterium acnes SK187] gi|289428762|ref|ZP_06430445.1| ribonuclease III [Propionibacterium acnes J165] gi|295130991|ref|YP_003581654.1| ribonuclease III [Propionibacterium acnes SK137] gi|289153115|gb|EFD01833.1| ribonuclease III [Propionibacterium acnes SK187] gi|289158160|gb|EFD06380.1| ribonuclease III [Propionibacterium acnes J165] gi|291376694|gb|ADE00549.1| ribonuclease III [Propionibacterium acnes SK137] gi|332675870|gb|AEE72686.1| ribonuclease III [Propionibacterium acnes 266] Length = 246 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 19 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 77 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + Q+AR+L + I++ + TSI AD E+L+ Sbjct: 78 PDKPEGQLAKLRSAVVSTVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 137 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ S Sbjct: 138 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 196 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 197 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 234 >gi|300811711|ref|ZP_07092185.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497287|gb|EFK32335.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 231 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 110/231 (47%), Gaps = 10/231 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ L+++ G F + LLE+A THSS + +YE+LEFLGD +L + Sbjct: 1 MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ HF EGEL+ +++V E S+VA + I + K ++ Sbjct: 61 SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTP 173 DV E+ AL+LD GIE F + + +G RD KT+LQE VT Sbjct: 121 EDVFEAFNGALFLDQGIEAVEKFSSQTVYP-LIAAGYFTPSRDFKTDLQELLQQNGSVTI 179 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 EY+V S P F V V + G A G +K+ AEQ AA+ L+ Sbjct: 180 EYRVLNESQQP--PHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 228 >gi|183221945|ref|YP_001839941.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912013|ref|YP_001963568.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776689|gb|ABZ94990.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780367|gb|ABZ98665.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 242 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 7/223 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 L+ +F + SLL A H S ++ + ERLEFLGD +LG+L + L+ Sbjct: 16 SLQELQSITDTSFKDISLLHLAFVHRSFANEDSDRYLSDNERLEFLGDSVLGILAAEYLY 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 KEG L+ + +VSA +++AR F+ + K+ ++QAD E Sbjct: 76 KSLPKGKEGILAKLKSKMVSAPAIAKLARFYRFPDFLLLGKGE-KEKGEANLNLQADCFE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + + ALYLD G+ F+ +++ ++ ++S + +D KT LQE+ K+ PEY + Sbjct: 135 AFLGALYLDQGLNSCRIFLTPHFQTMEKGVESAEETKDYKTILQEYCQKKWKKLPEYILL 194 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDHD F+V V + G +KR AEQ+AA L+ Sbjct: 195 KEEGPDHDKDFSVSVSCENYFQSNGDGKNKRRAEQMAAKAALR 237 >gi|161621795|ref|YP_056158.2| ribonuclease III [Propionibacterium acnes KPA171202] Length = 246 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 19 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 77 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + ++AR+L + I++ + TSI AD E+L+ Sbjct: 78 PDKPEGQLAKLRSAVVSTVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 137 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ S Sbjct: 138 GAVELSAGLPNVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 196 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 197 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 234 >gi|256397117|ref|YP_003118681.1| ribonuclease III [Catenulispora acidiphila DSM 44928] gi|256363343|gb|ACU76840.1| ribonuclease III [Catenulispora acidiphila DSM 44928] Length = 276 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 23/235 (9%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 L R+G + L+++ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 19 EDLIARLGL-PVDARLIDRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYTTHS 77 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ +++V+++ ++VAR L L ++++ SI AD +E+LI Sbjct: 78 ELPEGQLAKLRSAVVNSKALAEVARGLRLGDYVKLGRGEETTGGRDKASILADTLEALIG 137 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ++YLD GIEVA V + + S D KT LQE P+Y+VT +G Sbjct: 138 SVYLDHGIEVAFDLVRRLFGPLIATSATLGAGLDWKTSLQELTAVAGIGVPDYRVT-ETG 196 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRA-----------------AEQVAAAEVL 220 PDHD F + G G SK+ AE +AA VL Sbjct: 197 PDHDKFFEADACVGGTVYGHGSGRSKKEAEQQAAEEAWRTIRETHAEALAAKGVL 251 >gi|225021993|ref|ZP_03711185.1| hypothetical protein CORMATOL_02025 [Corynebacterium matruchotii ATCC 33806] gi|224945279|gb|EEG26488.1| hypothetical protein CORMATOL_02025 [Corynebacterium matruchotii ATCC 33806] Length = 259 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 108/224 (48%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 + + ++ L +G + +L ALTH S ++ + ERLEFLGD +LGL ++ L Sbjct: 19 AKVDHAPLLAALGVDLPH-DILTLALTHRSFANENGMLPNNERLEFLGDAVLGLSVAGKL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F + + E ++S S+VS + +ARE+ L +I + SI AD Sbjct: 78 FEQYPTRPESDISKMRASIVSRYGLADIAREIGLGQYILLGKGELLTDGRNKDSILADTT 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+L+ A+Y G ++A V + + + ++ +D KT LQE P Y+ Sbjct: 138 EALLGAIYRIHGFDIARDVVLRLFAHKISHAQATALHQDWKTSLQERLAEYKLPMPVYEA 197 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T GP+H+ FT V + G +G +K+ AEQ A + L+ Sbjct: 198 TSV-GPEHEQVFTASVNVLGRIIGEGTGTNKKLAEQAGAHQALE 240 >gi|15892080|ref|NP_359794.1| ribonuclease III [Rickettsia conorii str. Malish 7] gi|22654066|sp|Q92JB0|RNC_RICCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|15619202|gb|AAL02695.1| ribonuclease III [Rickettsia conorii str. Malish 7] Length = 227 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 113/224 (50%), Gaps = 5/224 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 + LEK + Y+F N+ LL +AL+H S+ ++ + YERLEFLGD +L L+I+ +L Sbjct: 2 ESFEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEIL 61 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F +F + EG L+ + LV ET V +L L ++I ++ + + Sbjct: 62 FRNFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYIIMTHGEEVAGGRDNLNNIENAT 121 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+LIAA+YLD IE ++ W + D KT LQEWA A P Y++ Sbjct: 122 EALIAAIYLDSNIETTHDIIENLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIK 181 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 R G H FTV+V++ G + + AE+ AA +L R Sbjct: 182 REGASHSSTFTVLVKVKDYEQ-TGTGHTIKEAEKNAARSLLHRL 224 >gi|327538797|gb|EGF25444.1| ribonuclease III [Rhodopirellula baltica WH47] Length = 297 Score = 227 bits (580), Expect = 8e-58, Method: Composition-based stats. Identities = 72/218 (33%), Positives = 117/218 (53%), Gaps = 3/218 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++ +GY F + LL ALTH+S + S ERLEFLGD +LGL + LFN + Sbjct: 64 KIERCQEILGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVCEWLFNEYP 123 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ +++VS +C +VA +L L + V + ++ S+ S+ +DV E++IA Sbjct: 124 EYSEGDLTKIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNR-SYPKSLVSDVFEAVIA 182 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALY+DGG E+ + + + + + + K+ LQ++A + TP YK+ +G Sbjct: 183 ALYIDGGPEIVRDRLKLWLAEEVNLAVDTQGSGNHKSVLQQFAQRELSATPVYKLIRETG 242 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 PDH F + + A +K+ AEQ AAA L Sbjct: 243 PDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAAANAL 280 >gi|284006739|emb|CBA71996.1| ribonuclease III [Arsenophonus nasoniae] Length = 204 Score = 227 bits (580), Expect = 8e-58, Method: Composition-based stats. Identities = 65/190 (34%), Positives = 100/190 (52%), Gaps = 6/190 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 ++ALTH S S + ERLEFLGD IL +I+ L++ F EG++S +LV T Sbjct: 2 KQALTHRSASSGH---NERLEFLGDSILSFVIANDLYHRFPKVDEGDMSRMRATLVRGNT 58 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 +++ARE DL +R+ K SI AD +E+LI +++LD I+ V ++ Sbjct: 59 LAELAREFDLGECLRLGPGELKSGGFRRESILADTIEALIGSIFLDSDIQTTERIVLAWY 118 Query: 144 KQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG-LAP 200 R ++ G ++D KT LQE+ + P Y V G HD FT+ ++SG P Sbjct: 119 DTRLIEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVRVRGEAHDQEFTIHCQVSGIKEP 178 Query: 201 AQGMDCSKRA 210 +G+ S+R Sbjct: 179 VEGVGSSRRK 188 >gi|239814409|ref|YP_002943319.1| ribonuclease III [Variovorax paradoxus S110] gi|259646554|sp|C5CSF5|RNC_VARPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|239800986|gb|ACS18053.1| ribonuclease III [Variovorax paradoxus S110] Length = 228 Score = 227 bits (580), Expect = 8e-58, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 6/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + L++R+ ++F++ LL+ ALTH S S + ERLEFLGD +L L +S LL+ + Sbjct: 5 LTALQERLKHSFSDTRLLQLALTHRSFS---ADHNERLEFLGDSVLNLAVSHLLYTRLSA 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS +LV +T ++A EL L+ +R+ + SI AD +E+LI A Sbjct: 62 LPEGDLSRVRANLVKQDTLHRLALELQLSPLLRLGEGEARSGGPNRPSILADALEALIGA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD G A V + ++ + +D KTELQEW P Y+V G Sbjct: 122 VYLDAGFSAAEALVRRLYESVEINPRMDAVAKDPKTELQEWLQGHKMKLPVYRVAATLGA 181 Query: 184 DHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 H F V E+ L +G+ S+RA EQ AAA +L R Sbjct: 182 AHKQTFDVECEVPELGLRERGIGGSRRAGEQAAAAAMLIRL 222 >gi|307329834|ref|ZP_07608989.1| ribonuclease III [Streptomyces violaceusniger Tu 4113] gi|306884563|gb|EFN15594.1| ribonuclease III [Streptomyces violaceusniger Tu 4113] Length = 278 Score = 227 bits (580), Expect = 8e-58, Method: Composition-based stats. Identities = 72/212 (33%), Positives = 112/212 (52%), Gaps = 6/212 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 19 TASSHTILEGRLGYQLES-ALLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R LDL +FIR+ SI AD + Sbjct: 78 YRIHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTL 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS D KT LQE + PEY + Sbjct: 138 EAVIGAVYLDQGLDAAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEY-L 196 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 +GPDH+ FT + G+A G SK+ Sbjct: 197 VSETGPDHEKTFTAAARVGGVAYGTGTGRSKK 228 >gi|73541939|ref|YP_296459.1| ribonuclease III [Ralstonia eutropha JMP134] gi|90101640|sp|Q46Z18|RNC_RALEJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|72119352|gb|AAZ61615.1| RNAse III [Ralstonia eutropha JMP134] Length = 256 Score = 227 bits (580), Expect = 8e-58, Method: Composition-based stats. Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 6/209 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S + ERLEFLGD +L ++ +LF F Sbjct: 1 MNLDALQQRLGYRFSKPELLQQALTHRS---HSAQHNERLEFLGDSVLNCAVADMLFGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L+ +R+ K SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLSEVLRLGEGELKSGGFRRPSILADALEAIV 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G E A T + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDAGFEAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177 Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKR 209 G H +F V + L G S+R Sbjct: 178 GAAHSQQFEVECMVPKLEVRVFGTGASRR 206 >gi|288576266|ref|ZP_05978490.2| ribonuclease III [Neisseria mucosa ATCC 25996] gi|288565937|gb|EFC87497.1| ribonuclease III [Neisseria mucosa ATCC 25996] Length = 271 Score = 227 bits (580), Expect = 9e-58, Method: Composition-based stats. Identities = 64/219 (29%), Positives = 114/219 (52%), Gaps = 6/219 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++ ++GY F + +LL++ALTH S + ++ ER EF+GD IL ++ +LF+ F Sbjct: 43 HTAIQNKLGYHFKDTALLQQALTHRSY---HAKNNERFEFVGDSILNYTVAKMLFDAFPK 99 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 100 LTEGELSRLRASLVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 159 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + +R ++ +D KT LQE A+ P+Y++ + G Sbjct: 160 VSFDADFAEAEKVVRHLFAERVKRADFKTQGKDNKTALQEALQARRLALPKYRIEEQIGH 219 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 +D F + ++ L + S++ AEQ AA E L+ Sbjct: 220 ANDSMFLISCDLGELGFICKAQGSSRKVAEQQAAKEALQ 258 >gi|325849059|ref|ZP_08170551.1| ribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480304|gb|EGC83367.1| ribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 238 Score = 227 bits (580), Expect = 9e-58, Method: Composition-based stats. Identities = 67/219 (30%), Positives = 114/219 (52%), Gaps = 7/219 (3%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY F N++L++ ALTHSS + ++ S ERLEFLGD IL L++S L+ + S E Sbjct: 18 IGYIFKNKNLIDVALTHSSYINESKDKNRSSNERLEFLGDSILDLVVSEELYKNHKSYPE 77 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ + +V + S+ + + +L+S++ S++AD E+ AA+YL Sbjct: 78 GKLTKIRSRIVCTSSFSKASEKFNLSSYLLFGKGEISHNGREKKSVKADTFEAFCAAIYL 137 Query: 129 DGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D G F+ + + + L++ D KT+LQE+ + +YK+ GP+H Sbjct: 138 DAGYVFLKNFLMENYYQTVKELLENDLLFIDYKTKLQEYFNKTNRTILKYKLAKEEGPEH 197 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + F + V + G +K+ AEQ+AA + K+ Sbjct: 198 NKTFYMDVYAKNKKLSTGKGKNKKEAEQMAAMKAYKKLN 236 >gi|241761668|ref|ZP_04759755.1| Ribonuclease III [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260754033|ref|YP_003226926.1| ribonuclease III [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283856457|ref|YP_163110.2| ribonuclease III [Zymomonas mobilis subsp. mobilis ZM4] gi|292495068|sp|Q9Z5U2|RNC_ZYMMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|241373976|gb|EER63509.1| Ribonuclease III [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553396|gb|ACV76342.1| ribonuclease III [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283775461|gb|AAV89999.2| Ribonuclease III [Zymomonas mobilis subsp. mobilis ZM4] Length = 246 Score = 227 bits (580), Expect = 9e-58, Method: Composition-based stats. Identities = 78/203 (38%), Positives = 119/203 (58%), Gaps = 3/203 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S +EK +G+ + +L +A+TH S +S Y+RLEFLGDR+LGL+I+ L++ F Sbjct: 30 ISWIEKNLGHRPKDPALFLRAMTHPSHGNS---DYQRLEFLGDRVLGLVIANWLYDLFPR 86 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS R NSLVS +C+ +AR + L ++R+ R D + ++ DV+E++I A Sbjct: 87 EPEGKLSRRLNSLVSGASCASIARIVGLPQWLRLGKQARDDGAAASDNVLGDVMEAMIGA 146 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 ++L+ GIE AG + KYW + K+ LQEWA A P Y++ R+GP H Sbjct: 147 IFLESGIEAAGKLIHKYWAPLVTGQESAPKHPKSALQEWAAAHNRRPPVYEIVSRTGPQH 206 Query: 186 DPRFTVVVEISGLAPAQGMDCSK 208 +P FT+ V I+G+ A SK Sbjct: 207 NPCFTIQVSIAGVGEASAEGSSK 229 >gi|171463192|ref|YP_001797305.1| Ribonuclease III [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192730|gb|ACB43691.1| Ribonuclease III [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 263 Score = 227 bits (580), Expect = 9e-58, Method: Composition-based stats. Identities = 69/215 (32%), Positives = 109/215 (50%), Gaps = 9/215 (4%) Query: 1 MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIST 57 M+A + L++R+GY F LL +ALTH S +++ ERLEFLGD IL +++ Sbjct: 1 MNARAIIETGPLQERLGYTFKKPELLNQALTHRS---HSKKNNERLEFLGDSILNCVVAE 57 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +L+ + EG+LS +LV + ++A+ L L+ ++R+ K SI AD Sbjct: 58 MLYERYSDLDEGDLSRVRANLVKQQALYEIAQTLSLSDYLRLGEGELKSGGFRRPSILAD 117 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 +E++ A++LDGG E A T + K + + +D KT LQE + P Y Sbjct: 118 TLEAVTGAIFLDGGFEAAKTSLRKLYSIILAHVDPKTLGKDDKTLLQECLQSYQLPLPAY 177 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKR 209 VT +G H+ +F V I A +G S+R Sbjct: 178 NVTGTTGAAHNQQFEVECLIPSHKVAVKGEGASRR 212 >gi|224825223|ref|ZP_03698329.1| Ribonuclease III [Lutiella nitroferrum 2002] gi|224602894|gb|EEG09071.1| Ribonuclease III [Lutiella nitroferrum 2002] Length = 238 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 67/211 (31%), Positives = 105/211 (49%), Gaps = 6/211 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + +++ L +GY F LL +ALTH S + ER EF+GD IL ++ +LF+ Sbjct: 6 TEVKFGRLSVALGYRFTRPELLRQALTHRSFGSP---NNERFEFIGDSILNYTVARMLFD 62 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F S EGELS +LV+ + +++A L L ++ + K SI AD +E+ Sbjct: 63 RFPSLSEGELSRLRANLVNQSSLAEIALGLGLGDYLYLGEGELKSGGFNRPSILADALEA 122 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 AA+ D A V + ++QR A+ K +DAKT LQE A+ P+Y++ Sbjct: 123 TFAAVSFDTDFAAAENVVRRLYEQRVAAIDPTKHAKDAKTRLQEALQARKLALPKYRILS 182 Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKR 209 +SG H+ F V ++ L G S+R Sbjct: 183 QSGEAHEQWFKVECDLGELAVIVTGEGGSRR 213 >gi|312115946|ref|YP_004013542.1| ribonuclease III [Rhodomicrobium vannielii ATCC 17100] gi|311221075|gb|ADP72443.1| ribonuclease III [Rhodomicrobium vannielii ATCC 17100] Length = 236 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 87/204 (42%), Positives = 115/204 (56%), Gaps = 1/204 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 R LE +GY F R LL +ALTHSS S ERLEFLGDR+LGL I+ LLF F Sbjct: 7 RVEELEASLGYKFQERGLLAEALTHSSARSEKGGRDNERLEFLGDRVLGLSIAALLFERF 66 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A+E EL+ FN+LV TC++VA +L+L + ++ + I AD VE+L+ Sbjct: 67 PKAREVELARHFNALVCKTTCAEVALKLELGPHLVMAPSEARSGGRKKDVILADAVEALL 126 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+ +DGG A T V ++W+ S DAKT LQE+A ++ P+Y RSG Sbjct: 127 GAISVDGGFAAAETVVHRHWEPFIASSEPPAPDAKTALQEFAQSQKRGLPDYHEVERSGA 186 Query: 184 DHDPRFTVVVEISGLAPAQGMDCS 207 DH P FTV V + GL P +G S Sbjct: 187 DHAPNFTVEVRVQGLKPERGTGSS 210 >gi|254514114|ref|ZP_05126175.1| ribonuclease III [gamma proteobacterium NOR5-3] gi|219676357|gb|EED32722.1| ribonuclease III [gamma proteobacterium NOR5-3] Length = 224 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 80/212 (37%), Positives = 115/212 (54%), Gaps = 8/212 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M A ++ LE++ G N SLL +AL+H S+ + ERLEFLGD +LG ++S L+ Sbjct: 1 MDAQQW--LERQFGCRLQNGSLLTQALSHRSVG---SRNNERLEFLGDSVLGFVVSEELY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EG+LS SLV + VARELDL +R+ + SI AD +E Sbjct: 56 RRFPDADEGQLSRLRVSLVKGSALAAVARELDLGDQLRLGAGEIHGGGRRRDSILADTLE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +L+ A+ LD GIE + + ++ R ALK + R+D KT LQE+ + P+Y + Sbjct: 116 ALLGAIVLDLGIEACRAAISRVFQSRFDALKLEQARKDPKTRLQEFLQGRGRQLPDYVLC 175 Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKR 209 +G DH FTV E+ G AQG+ S+R Sbjct: 176 DAAGEDHAKIFTVACELSDGDEVAQGVGESRR 207 >gi|83652594|gb|ABC36657.1| ribonuclease III, putative [Burkholderia thailandensis E264] Length = 487 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 101/206 (49%), Gaps = 6/206 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF Sbjct: 18 SMPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQR 74 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 75 FSKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 134 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 135 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 194 Query: 181 SGPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 195 HGAAHNQQFEVECTVPKLDIKVSGSG 220 >gi|254423554|ref|ZP_05037272.1| ribonuclease III [Synechococcus sp. PCC 7335] gi|196191043|gb|EDX86007.1| ribonuclease III [Synechococcus sp. PCC 7335] Length = 228 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 66/212 (31%), Positives = 102/212 (48%), Gaps = 6/212 (2%) Query: 16 AFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N +L ++A+TH S ++ E ERLEFLGD IL L + LF F EGEL+ Sbjct: 15 TFTNSALWQQAMTHKSFANEQPTATEHNERLEFLGDAILTFLSAEYLFVRFPKQSEGELT 74 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-- 130 ++LV + A+ L L ++R+ K+ + E+LI A +LD Sbjct: 75 PMRSALVDQSQLHRFAQGLKLDEYLRLGKGAEKEGARKSARLLCSAFEALIGAYFLDQEH 134 Query: 131 GIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 +++ ++ ++ +D KT LQEWA G PEY GPDH F Sbjct: 135 NLQLVKDYITPIFESAIAPDVEAGVKDDKTRLQEWAQKTTGSVPEYVEISTLGPDHAKEF 194 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + V+I G + +G SK+ A+++AA L+ Sbjct: 195 VIEVQIGGKSYGRGSGRSKQKAQKLAARSTLE 226 >gi|16125807|ref|NP_420371.1| ribonuclease III [Caulobacter crescentus CB15] gi|221234567|ref|YP_002517003.1| ribonuclease III [Caulobacter crescentus NA1000] gi|22654073|sp|Q9A805|RNC_CAUCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807242|sp|B8H627|RNC_CAUCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|13422947|gb|AAK23539.1| ribonuclease III [Caulobacter crescentus CB15] gi|220963739|gb|ACL95095.1| ribonuclease III [Caulobacter crescentus NA1000] Length = 231 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 125/204 (61%), Gaps = 3/204 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+RIG+ F +R LLE+ALTH+S+ ++ E LEF+GDR+LGLL + L F A Sbjct: 11 LERRIGHRFEDRELLERALTHASVGDGAKKVRDNEVLEFIGDRVLGLLAAEALAQRFPKA 70 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 KEGEL+ R N+LVS ETC++VAR+ +L +R+S+ K SI A E+L+AAL Sbjct: 71 KEGELAPRLNALVSRETCARVARKAELGPALRLSASSSKIGGRETDSILAGATEALMAAL 130 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 Y DGG+E A W ++G+ RD KT LQEWA + P Y+V R+GPDH Sbjct: 131 YQDGGLEAARKVFLDLWNDEFDRAGEGRPRDPKTALQEWAQGQGRPLPTYRVLDRTGPDH 190 Query: 186 DPRFTVVVEISGLAPAQGMDCSKR 209 P FTV V ++G+ PA S++ Sbjct: 191 APVFTVEVSVTGVDPAIAKGKSRQ 214 >gi|254490771|ref|ZP_05103954.1| ribonuclease III [Methylophaga thiooxidans DMS010] gi|224463943|gb|EEF80209.1| ribonuclease III [Methylophaga thiooxydans DMS010] Length = 227 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 108/223 (48%), Gaps = 6/223 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M R L K++ F LL +ALTH S ++ ERLE+LGD IL +I+ LF Sbjct: 1 MITQRQKALCKQLEITFKKTDLLLQALTHRSAD---PKNNERLEYLGDAILSFVIAEELF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N F KEG+LS SLV ET +++AREL L + + K SI AD VE Sbjct: 58 NRFPQVKEGKLSRLRASLVKGETLAELARELKLGDVLILGPGELKSGGFRRESILADAVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ ALYLDGG+E + + +++R + + +D KT LQE ++ P Y V Sbjct: 118 AILGALYLDGGLESVKALILRLYQERLDNIDVTETVKDPKTRLQELLQSRKQPLPIYSVK 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220 P F +++ L S R AE+ AA L Sbjct: 178 EVKTDKKHPAFEASCQVTLLDKVVVAQGSSHRKAEKKAAERAL 220 >gi|154249761|ref|YP_001410586.1| ribonuclease III [Fervidobacterium nodosum Rt17-B1] gi|154153697|gb|ABS60929.1| Ribonuclease III [Fervidobacterium nodosum Rt17-B1] Length = 239 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 116/224 (51%), Gaps = 11/224 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLL 59 L++R+GY F N+ LL AL HSS ++ + ERLEFLGD ++ L++ +L Sbjct: 12 LEELQRRLGYTFKNQMLLFNALCHSSYAYELNQIGRDVQDNERLEFLGDAVVELVVCDIL 71 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + ++ + EG+++ ++ S E +++A E++L +I + K +SI AD Sbjct: 72 YRNYPDSSEGDMAKVKGAVASEEVLTELANEIELGKYIFLGKGEEKTGGRKRSSILADAF 131 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+L AA+YLDG +E + K+ +G+ D KT LQE +F PEYK Sbjct: 132 EALCAAIYLDGNLESVVKVFGEKLKREIEIFYTGQRIFDYKTALQEITQERFKELPEYKT 191 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 D + +F V + I G + G+ SK+ AE+ AA + + Sbjct: 192 VK---NDENGKFLVELYIQGKKISMGIGNSKKDAEKDAAKKAYE 232 >gi|149926460|ref|ZP_01914721.1| ribonuclease III [Limnobacter sp. MED105] gi|149824823|gb|EDM84037.1| ribonuclease III [Limnobacter sp. MED105] Length = 226 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 72/209 (34%), Positives = 101/209 (48%), Gaps = 6/209 (2%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 Y+F +++LL ALTH S S + ERLEFLGD +L S LLF EG++S Sbjct: 3 YSFKDQALLRLALTHRSYSSHH---NERLEFLGDSVLNCAASILLFETHPDMDEGKMSRV 59 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 + LV + + V R L L ++ + + + + SI AD +E+L A+ LD G E Sbjct: 60 RSHLVKQDCLAMVGRNLLLDQYLFLGAGELRSAKTIKDSIVADALEALFGAILLDSGFEA 119 Query: 135 AGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 A V + K L++ +D KT LQE K P Y+V G P F+V Sbjct: 120 ARDCVVRLLKPVMLETPIESMGKDPKTRLQELLQGKRMKLPMYRVLVEGGTSASPEFSVE 179 Query: 193 VEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220 + L + G S+R AEQ AA VL Sbjct: 180 CAVEDLEITKVGQGHSRRVAEQHAAQAVL 208 >gi|256830196|ref|YP_003158924.1| ribonuclease III [Desulfomicrobium baculatum DSM 4028] gi|256579372|gb|ACU90508.1| ribonuclease III [Desulfomicrobium baculatum DSM 4028] Length = 242 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 111/221 (50%), Gaps = 3/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFD 64 L+ I Y F LL +ALTHSS ++ + ERLEFLGD +L L +S LF F Sbjct: 10 LQALQNEIHYEFKQVKLLIQALTHSSHANEHGCPHNERLEFLGDAVLELAVSQELFRKFP 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ ++LVS +Q AR + L + + + S+ +D +E+++ Sbjct: 70 EVQEGHLTKMRSALVSEGALAQAARRIHLGACLLLGRGEDVQGGREKNSVLSDALEAVLG 129 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLDGG+E A T V+ + + + RD K+ LQE + P Y + G Sbjct: 130 AVYLDGGLERAITCVNFLYAGQWPTPPETFRPRDFKSLLQEATQRIWKARPSYALRESHG 189 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P+H ++TVVV + + + S R AEQ AA + L + Sbjct: 190 PEHAKQYTVVVTMPDKTEVECEERSMRKAEQGAAEQALVQL 230 >gi|314954310|gb|EFS98716.1| ribonuclease III [Propionibacterium acnes HL027PA1] Length = 265 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 38 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + Q+AR+L + I++ + TSI AD E+L+ Sbjct: 97 PDKPEGQLAKLRSAVVSTVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-F 215 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253 >gi|78065718|ref|YP_368487.1| ribonuclease III [Burkholderia sp. 383] gi|77966463|gb|ABB07843.1| RNAse III [Burkholderia sp. 383] Length = 408 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 SKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|312984414|ref|ZP_07791749.1| ribonuclease III [Lactobacillus crispatus CTV-05] gi|310894189|gb|EFQ43276.1| ribonuclease III [Lactobacillus crispatus CTV-05] Length = 229 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLI 55 M + ++ L+ F N LLE+A THSS S+ + YE+LEFLGD +L L + Sbjct: 1 MVSTKFLKKLKDDYNIEFNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S ++ H+ EGEL+ +++V E S+ A E I + + K ++ Sbjct: 61 SNYVYLHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPE 174 DV E+ AL+LD G+ F+ K RD KT+LQE V E Sbjct: 121 EDVFEAFNGALFLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQEVLQQDGPVNIE 180 Query: 175 YKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y V S P H F V ++I+G ++G +K+AAEQ AA L++ Sbjct: 181 YTVISESQLPSH---FVVELKINGKVESKGEGHNKKAAEQQAAKVALQKL 227 >gi|292571710|gb|ADE29625.1| Ribonuclease III [Rickettsia prowazekii Rp22] Length = 225 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLL 59 + LE +GY+F N+ LL +AL+H S+ + Y + YERLEFLGD +L LLI+ +L Sbjct: 2 ESFEKLETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLITEIL 61 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F +F++ KEG L+ + LV ET V +L L +I ++ + + Sbjct: 62 FKNFENYKEGNLAKIRSYLVCKETICIVGTKLALKDYIIMTHGEEVAGGRDNPNNIENAT 121 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+LIAA+YLD IE+ ++K W + D KT LQEWA A P Y++ Sbjct: 122 EALIAAIYLDSNIEITHNIIEKLWAEFMKVQNFTDYDPKTALQEWAQANSHHLPIYRLIK 181 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 R G H FTV+V++ S + AE+ AA +L R Sbjct: 182 REGAAHSSIFTVLVKVKDYEQ-TCTGYSIKEAEKKAARSLLHRL 224 >gi|32473407|ref|NP_866401.1| ribonuclease III [Rhodopirellula baltica SH 1] gi|32398087|emb|CAD78182.1| ribonuclease III [Rhodopirellula baltica SH 1] Length = 297 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 72/218 (33%), Positives = 117/218 (53%), Gaps = 3/218 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++ +GY F + LL ALTH+S + S ERLEFLGD +LGL + LFN + Sbjct: 64 KIERCQEILGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVCEWLFNEYP 123 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ +++VS +C +VA +L L + V + ++ S+ S+ +DV E++IA Sbjct: 124 EYSEGDLTKIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNR-SYPKSLVSDVFEAVIA 182 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALY+DGG E+ + + + + + + K+ LQ++A + TP YK+ +G Sbjct: 183 ALYIDGGPEIVRDRLKLWLAEEVNLAVDTQGSGNHKSVLQQFAQRELSATPVYKLIRETG 242 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 PDH F + + A +K+ AEQ AAA L Sbjct: 243 PDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAAANAL 280 >gi|288923504|ref|ZP_06417623.1| ribonuclease III [Frankia sp. EUN1f] gi|288345162|gb|EFC79572.1| ribonuclease III [Frankia sp. EUN1f] Length = 281 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 69/214 (32%), Positives = 108/214 (50%), Gaps = 11/214 (5%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL++ALTH S ++ + ERLEFLGD +LGL+++ LF EG+L+ + Sbjct: 23 DPELLDRALTHRSYAYENGGLPTNERLEFLGDAVLGLIVTAALFRRHPDLPEGQLAKQRA 82 Query: 77 SLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S+V+ + VAR + + ++ + SI AD +E++I A+YL ++ Sbjct: 83 SVVNMRALADVARRIGPTGIGPYLLLGRGEEATGGRDKPSILADTLEAVIGAVYLSNSLD 142 Query: 134 VAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 VA FV + + ++ D KT LQE P+Y VT +GPDH RFT Sbjct: 143 VASGFVHRLFDPLLDEAAGRGAGLDWKTSLQEQTALLGLGPPDYVVT-EAGPDHAKRFTA 201 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEV---LKR 222 ++G +G SK+ AEQ AAA L++ Sbjct: 202 FARVAGEVLGEGEGGSKKEAEQRAAATAFAMLEK 235 >gi|319937586|ref|ZP_08011991.1| ribonuclease III [Coprobacillus sp. 29_1] gi|319807426|gb|EFW04035.1| ribonuclease III [Coprobacillus sp. 29_1] Length = 232 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 107/227 (47%), Gaps = 7/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLIST 57 M L + E F SL ++A TH+S ++ Y + YERLEF+GD +L L +S Sbjct: 1 MKILDFLQAE---NIPFQKLSLYKEAFTHASYANEAHHYNKDYERLEFMGDAVLQLYVSD 57 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF+ F EG L+ + LV E+ ++ ++EL L + + K S+ A+ Sbjct: 58 FLFHLFPDVPEGTLTTLRSKLVREESLARFSKELGLGELLFLGVGEEKSGGRERESVLAN 117 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176 + ES I ALYLD G + +++ Q D KT LQE A T Y+ Sbjct: 118 IFESFIGALYLDCGKDEVIKILEQTIFQHVNDLDYDDITDYKTTLQELIQADQRKTVTYE 177 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + SGP + P F V V + + G SK+ AEQ AA + L + Sbjct: 178 LLETSGPSNAPEFKVAVIMDEMRLGVGKGTSKKRAEQQAAKDALNKL 224 >gi|295693172|ref|YP_003601782.1| ribonuclease iii [Lactobacillus crispatus ST1] gi|295031278|emb|CBL50757.1| Ribonuclease III [Lactobacillus crispatus ST1] Length = 229 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLI 55 M + ++ L+ F + LLE+A THSS S+ + YE+LEFLGD +L L + Sbjct: 1 MVSTKFLKKLKDEYNIVFNDEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S ++ H+ EGEL+ +++V E S+ A E I + + K ++ Sbjct: 61 SNYVYLHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPE 174 DV E+ AL+LD G+ F+ K RD KT+LQE V E Sbjct: 121 EDVFEAFNGALFLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQEVLQQDGPVNIE 180 Query: 175 YKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y V S P H F V ++I+G ++G +K+AAEQ AA L++ Sbjct: 181 YTVISESQLPSH---FVVELKINGKVESKGEGHNKKAAEQQAAKVALQKL 227 >gi|21674928|ref|NP_662993.1| ribonuclease III [Chlorobium tepidum TLS] gi|28201878|sp|Q8KAN7|RNC_CHLTE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|21648156|gb|AAM73335.1| ribonuclease III [Chlorobium tepidum TLS] Length = 272 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 108/225 (48%), Gaps = 9/225 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLF 60 + L + G NR + ALTH S+ H + ES +RLEFLGD +L LLIS LF Sbjct: 33 THLARLTG-RPCNRLIYRTALTHRSVLHDHHSEEHKPESNQRLEFLGDAVLDLLISEHLF 91 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + EG LS +V+ ++ + A EL L + + K S AD +E Sbjct: 92 KQFPGSDEGHLSSNRAKIVNRKSLAAFALELQLGEHLIIGESADKQKIRTSESALADALE 151 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +L+ A+YLD G+ A F+ + + K + + K+ L E+ ++ P Y V Sbjct: 152 ALVGAIYLDQGLAGAERFITNHVIAKVDLHKLVEAEYNYKSRLIEYTQSRQLPPPLYTVI 211 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G +H+ F V V +G +G K+ AEQ+AA E +KR Sbjct: 212 TEEGAEHEKTFVVEVSCNGQPLGRGTAPRKKDAEQLAAKEAMKRL 256 >gi|15603994|ref|NP_220509.1| ribonuclease III [Rickettsia prowazekii str. Madrid E] gi|6226018|sp|Q9ZE31|RNC_RICPR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|3860685|emb|CAA14586.1| RIBONUCLEASE III (rnc) [Rickettsia prowazekii] Length = 225 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLL 59 + LE +GY+F N+ LL +AL+H S+ + Y + YERLEFLGD +L LLI+ +L Sbjct: 2 ESFEKLETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLITEIL 61 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F +F++ KEG L+ + LV ET V +L L +I ++ + + Sbjct: 62 FKNFENYKEGNLAKIRSYLVCKETICIVGTKLALKDYIIMTHGEEVAGGRDNPNNIENAT 121 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+LIAA+YLD IE+ ++K W + D KT LQEWA A P Y++ Sbjct: 122 EALIAAIYLDSNIEITHNIIEKLWAEFMKVQNLTDYDPKTALQEWAQANSHHLPIYRLIK 181 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 R G H FTV+V++ S + AE+ AA +L R Sbjct: 182 REGAAHSSIFTVLVKVKDYEQ-TCTGYSIKEAEKKAARSLLHRL 224 >gi|255264048|ref|ZP_05343390.1| ribonuclease III [Thalassiobium sp. R2A62] gi|255106383|gb|EET49057.1| ribonuclease III [Thalassiobium sp. R2A62] Length = 226 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 76/205 (37%), Positives = 112/205 (54%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 E R+G+ F +LL +A+TH+S+S ++ +RLEFLGDR+LGL+++ L Sbjct: 6 DLKAFEGRLGHRFETPALLVQAVTHASMSSPNRDDNQRLEFLGDRVLGLVMAEALLAADP 65 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EG L+ R+N+LV E C+ VARE+D+ + +++ K ++ D +E++IA Sbjct: 66 MAPEGILAPRYNALVRKEACADVAREVDVGAVLKLGRSEMKSGGRRKLALLGDAMEAVIA 125 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLD G E A V + W R RDAKT LQEWA + P Y R+GPD Sbjct: 126 AVYLDAGFEAAREMVLRLWGTRIHTVKADARDAKTALQEWAQGRGEGPPNYTEVSRTGPD 185 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209 H P F + V + + SKR Sbjct: 186 HAPIFEIEVRLEAGQSYRAKAGSKR 210 >gi|320352215|ref|YP_004193554.1| RNAse III [Desulfobulbus propionicus DSM 2032] gi|320120717|gb|ADW16263.1| RNAse III [Desulfobulbus propionicus DSM 2032] Length = 243 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 66/209 (31%), Positives = 106/209 (50%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNH 62 L++RIGY F + LL+ +L HSS + + E EFLGD +L L + +LF Sbjct: 16 LHELQERIGYRFRDLRLLQLSLIHSSFAFERLDDGRHNETQEFLGDAVLDLTVGYILFVR 75 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F +EG+L+ ++LV+ + + ARE+DL ++ + +SI + E+L Sbjct: 76 FPEMREGKLTRIRSALVNEQGLADRAREIDLGKYLLLGKGENASNGRDKSSILSCAYEAL 135 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + AL+LDGG + A FV ++++ + + DAK+ LQE +F PEY +T Sbjct: 136 VGALFLDGGYDQALAFVRRFFEPHIDQHQEQLVSADAKSSLQELLQERFNEGPEYMLTGE 195 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H F++ V G G SK+ Sbjct: 196 EGPAHARLFSITVTFQGEELGSGRASSKK 224 >gi|134295164|ref|YP_001118899.1| ribonuclease III [Burkholderia vietnamiensis G4] gi|134138321|gb|ABO54064.1| RNAse III [Burkholderia vietnamiensis G4] Length = 416 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|227878860|ref|ZP_03996766.1| ribonuclease III [Lactobacillus crispatus JV-V01] gi|256843377|ref|ZP_05548865.1| ribonuclease III [Lactobacillus crispatus 125-2-CHN] gi|256849801|ref|ZP_05555232.1| double stranded RNA-specific ribonuclease RNase [Lactobacillus crispatus MV-1A-US] gi|262046954|ref|ZP_06019914.1| ribonuclease III [Lactobacillus crispatus MV-3A-US] gi|293381175|ref|ZP_06627183.1| ribonuclease III [Lactobacillus crispatus 214-1] gi|227861551|gb|EEJ69164.1| ribonuclease III [Lactobacillus crispatus JV-V01] gi|256614797|gb|EEU19998.1| ribonuclease III [Lactobacillus crispatus 125-2-CHN] gi|256713290|gb|EEU28280.1| double stranded RNA-specific ribonuclease RNase [Lactobacillus crispatus MV-1A-US] gi|260572936|gb|EEX29496.1| ribonuclease III [Lactobacillus crispatus MV-3A-US] gi|290922215|gb|EFD99209.1| ribonuclease III [Lactobacillus crispatus 214-1] Length = 229 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLI 55 M + ++ L+ F N LLE+A THSS S+ + YE+LEFLGD +L L + Sbjct: 1 MVSTKFLKKLKDDYNIEFNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S ++ H+ EGEL+ +++V E S+ A E I + + K ++ Sbjct: 61 SNYVYLHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPE 174 DV E+ AL+LD G+ F+ K RD KT+LQE V E Sbjct: 121 EDVFEAFNGALFLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQEVLQQDGPVNIE 180 Query: 175 YKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y V S P H F V ++I+G ++G +K+AAEQ AA L++ Sbjct: 181 YTVISESQLPSH---FVVELKINGKVESKGEGHNKKAAEQQAAKFALQKL 227 >gi|172060069|ref|YP_001807721.1| ribonuclease III [Burkholderia ambifaria MC40-6] gi|171992586|gb|ACB63505.1| Ribonuclease III [Burkholderia ambifaria MC40-6] Length = 425 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPPSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 SKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|237732553|ref|ZP_04563034.1| ribonuclease III [Citrobacter sp. 30_2] gi|226908092|gb|EEH94010.1| ribonuclease III [Citrobacter sp. 30_2] Length = 204 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 66/190 (34%), Positives = 98/190 (51%), Gaps = 6/190 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 ++ALTH S S + ERLEFLGD IL +I+ L++ F EG++S +LV T Sbjct: 2 QQALTHRSASSKH---NERLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNT 58 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 +++ARE DL +R+ K SI AD VE+LI ++LD I+ + ++ Sbjct: 59 LAELAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEQLILNWY 118 Query: 144 KQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200 + R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 119 QTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEP 178 Query: 201 AQGMDCSKRA 210 G S+R Sbjct: 179 VVGTGSSRRK 188 >gi|115377692|ref|ZP_01464885.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1] gi|310821555|ref|YP_003953913.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1] gi|115365298|gb|EAU64340.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1] gi|309394627|gb|ADO72086.1| Ribonuclease III [Stigmatella aurantiaca DW4/3-1] Length = 240 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 113/223 (50%), Gaps = 6/223 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 R TLE R+G F + L ALTH S + +++ ERLEFLGD ++ L IS L Sbjct: 8 ERVQTLETRLGVPFLRKDLGLAALTHKSYFNEHRDAGLQDNERLEFLGDAVVDLAISHRL 67 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F A EGELS +V+ E +++AR L L + + S+ AD + Sbjct: 68 MERFPLAAEGELSKLRALIVNEEGLARIARRLSLGELLLLGRGEEMTGGREKNSLLADAL 127 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+++ A++L G+E VD+++ + + G+ D KT+LQE A + V P Y+V Sbjct: 128 EAVVGAVFLGAGMEPVMVLVDQHFAEALDGVAQGRSGLDYKTKLQEDAQTRLKVPPRYRV 187 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +GPDH+ F V V I A+ +K+ AEQ AA L Sbjct: 188 VAEAGPDHEKTFEVEVSIGSELYARATGRNKKEAEQAAARATL 230 >gi|325830746|ref|ZP_08164130.1| ribonuclease III [Eggerthella sp. HGA1] gi|325487153|gb|EGC89596.1| ribonuclease III [Eggerthella sp. HGA1] Length = 304 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNH 62 + + ++ +GY FA+ LL A+TH S + S + SYERLEFLGD ILG +++T+ F+ Sbjct: 33 KLAVAQEILGYRFADEQLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVATIAFDR 92 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ +LVS + S VA L A I S + S +V E++ Sbjct: 93 FHDLDEGGLTRIKVALVSGASLSDVAERLGFADVIVFGSSETGTGRRGLHSALENVYEAV 152 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +AAL+LDGGIE A FV R + + K+ LQE G+TP YK+ Sbjct: 153 VAALFLDGGIEAAEGFVRATLIPRMSADMAREPENPKSALQEKLQED-GITPTYKLVETQ 211 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP HD F V A+G +K+ AE AA L R G Sbjct: 212 GPPHDRTFVAQVFAGSQGLARGTGRTKKEAESQAAKSTLARLG 254 >gi|297156899|gb|ADI06611.1| ribonuclease III [Streptomyces bingchenggensis BCW-1] Length = 276 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 71/212 (33%), Positives = 112/212 (52%), Gaps = 6/212 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 20 TASSHTILEGRLGYQLES-ALLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTL 78 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R LDL +FIR+ SI AD + Sbjct: 79 YRIHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTL 138 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + +S D KT LQE + PEY + Sbjct: 139 EAVIGAVYLDKGLDAAAELVHRLFDPLIDRSSNLGAGLDWKTSLQELTATEGLGVPEY-L 197 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 +GPDH+ FT + G+A G SK+ Sbjct: 198 VSETGPDHEKTFTAAARVGGVAYGTGTGRSKK 229 >gi|113868517|ref|YP_727006.1| ribonuclease III [Ralstonia eutropha H16] gi|123133802|sp|Q0K8N3|RNC_RALEH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|113527293|emb|CAJ93638.1| dsRNA-specific ribonuclease [Ralstonia eutropha H16] Length = 256 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 63/209 (30%), Positives = 101/209 (48%), Gaps = 6/209 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S + ERLEFLGD +L ++ +L+ F Sbjct: 1 MNLDALQQRLGYRFSKPELLQQALTHRS---HSAQHNERLEFLGDSVLNCAVADMLYGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L+ +R+ K SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLSDTLRLGEGELKSGGFRRPSILADALEAIV 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G + A + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDAGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177 Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKR 209 G H +F V + L G S+R Sbjct: 178 GAAHSQQFEVECTVPKLEVRVFGTGASRR 206 >gi|161723174|ref|YP_442265.2| ribonuclease III [Burkholderia thailandensis E264] Length = 469 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 SKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|302542233|ref|ZP_07294575.1| ribonuclease III [Streptomyces hygroscopicus ATCC 53653] gi|302459851|gb|EFL22944.1| ribonuclease III [Streptomyces himastatinicus ATCC 53653] Length = 312 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 72/212 (33%), Positives = 111/212 (52%), Gaps = 6/212 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 A ++ LE R+GY + +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 30 KASSHTILEGRLGYQLES-ALLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTL 88 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R LDL +FIR+ SI AD + Sbjct: 89 YRIHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTL 148 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD G++ A V + + KS D KT LQE + PEY + Sbjct: 149 EAVIGAVYLDRGLDAAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEY-L 207 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 +GPDH+ FT + G+A G SK+ Sbjct: 208 VSETGPDHEKTFTAAARVGGVAYGTGTGRSKK 239 >gi|77416567|sp|Q7UGZ7|RNC_RHOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 266 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 72/218 (33%), Positives = 117/218 (53%), Gaps = 3/218 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++ +GY F + LL ALTH+S + S ERLEFLGD +LGL + LFN + Sbjct: 33 KIERCQEILGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVCEWLFNEYP 92 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ +++VS +C +VA +L L + V + ++ S+ S+ +DV E++IA Sbjct: 93 EYSEGDLTKIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNR-SYPKSLVSDVFEAVIA 151 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALY+DGG E+ + + + + + + K+ LQ++A + TP YK+ +G Sbjct: 152 ALYIDGGPEIVRDRLKLWLAEEVNLAVDTQGSGNHKSVLQQFAQRELSATPVYKLIRETG 211 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 PDH F + + A +K+ AEQ AAA L Sbjct: 212 PDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAAANAL 249 >gi|312795542|ref|YP_004028464.1| ribonuclease III [Burkholderia rhizoxinica HKI 454] gi|312167317|emb|CBW74320.1| Ribonuclease III (EC 3.1.26.3) [Burkholderia rhizoxinica HKI 454] Length = 408 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 8/206 (3%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ S LE R+ Y F N LL +A+TH S S ++ ERLEFLGD +L +++ LLF Sbjct: 18 SMPLSPLESRLHYEFRNAELLRQAMTHRSHSATH---NERLEFLGDSVLNCVVAALLFQR 74 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+LS +LV ++ ++A+ L++A +R+ + SI AD E++ Sbjct: 75 FGKLDEGDLSRVRANLVKQQSLYEIAQALNIAEALRLGEGELRSGGFRRPSILADTFEAV 134 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A++LDGG + A T + + + + +DAKT LQE+ P Y V Sbjct: 135 LGAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPSYAVIAT 194 Query: 181 SGPDHDPRFTVVVEISG---LAPAQG 203 +G H+ +F V + G Sbjct: 195 TGAAHNQQFEVECTVPKLEVKVFGTG 220 >gi|304413540|ref|ZP_07395013.1| ribonuclease III [Candidatus Regiella insecticola LSR1] gi|304284383|gb|EFL92776.1| ribonuclease III [Candidatus Regiella insecticola LSR1] Length = 235 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 15/221 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE R+GYAF R+LL +ALTH S S ++ ERLEFLGD IL I+ L+ Sbjct: 1 MDPIIIKKLETRLGYAFKQRALLVQALTHRSASRTH---NERLEFLGDAILNFFIAKALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV +T +++A E DL+ ++ + K+ S SI AD VE Sbjct: 58 QRFSDINEGDMSRMRATLVRGKTLAEIAHEFDLSDYLYLGKGELKNGKSPRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++++R + G+ ++D KT LQE+ + P Y VT Sbjct: 118 ALIGGIFLDSDIQTTERLLLTWYEKRLAEISPGEKQKDPKTRLQEYLQSHHLPLPSYLVT 177 Query: 179 FRSGPDHDPRFTVVVEI----------SGLAPAQGMDCSKR 209 G H+ +F + + +G S+R Sbjct: 178 QVHGEAHEQKFIIHCKFIIPCRENNLTKQEITVRGCGLSRR 218 >gi|194290152|ref|YP_002006059.1| ribonuclease iii [Cupriavidus taiwanensis LMG 19424] gi|238692743|sp|B3R1Z9|RNC_CUPTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|193223987|emb|CAQ69996.1| Ribonuclease III [Cupriavidus taiwanensis LMG 19424] Length = 256 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 63/209 (30%), Positives = 101/209 (48%), Gaps = 6/209 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S + ERLEFLGD +L ++ +L+ F Sbjct: 1 MNLDALQQRLGYRFSKPELLQQALTHRS---HSAQHNERLEFLGDSVLNCAVADMLYGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L+ +R+ K SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLSDTLRLGEGELKSGGFRRPSILADALEAIV 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G + A + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDAGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177 Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKR 209 G H +F V + L G S+R Sbjct: 178 GAAHSQQFEVECTVPKLEVRVFGTGASRR 206 >gi|222111791|ref|YP_002554055.1| ribonuclease iii [Acidovorax ebreus TPSY] gi|221731235|gb|ACM34055.1| ribonuclease III [Acidovorax ebreus TPSY] Length = 228 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 74/208 (35%), Positives = 107/208 (51%), Gaps = 6/208 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M STL++R+ + F++ SLL++ALTH S S + ERLEFLGD +L L +S+LLF Sbjct: 1 MQPASLSTLQQRLQHQFSDASLLQRALTHRSFS---ADHNERLEFLGDSVLSLAVSSLLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EGELS LV ++ Q+A L L +R+ K SI AD +E Sbjct: 58 RRMRDLPEGELSRVRALLVKQDSLHQIAVRLQLPPVLRLGEGEAKSGGKLRPSILADALE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD G E A V + ++ L + +DAKT LQEW + P+Y+V Sbjct: 118 AIIGAVYLDAGYECAEQLVHRLFEGVELSPRLQEAAKDAKTALQEWLQGRKMNLPQYRVV 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMD 205 +G H+ F V E+ +G Sbjct: 178 STTGAAHNQVFHVECEVVELQRVERGSG 205 >gi|159898112|ref|YP_001544359.1| ribonuclease III [Herpetosiphon aurantiacus ATCC 23779] gi|159891151|gb|ABX04231.1| Ribonuclease III [Herpetosiphon aurantiacus ATCC 23779] Length = 234 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 68/209 (32%), Positives = 107/209 (51%), Gaps = 5/209 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 + + L+ +GY F + + L A+ H S H + E S ERLEFLGD +L + + L Sbjct: 1 MDLNKLQAELGYTFNDLNFLRAAMLHRSYVHEHPEAGSESNERLEFLGDALLNFICGSFL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F+ F EG+L+ LV T + +AR +L S++++S + ++ AD Sbjct: 61 FHEFPELGEGDLTKTRAMLVQTRTLAGLARRFNLGSYVQISRGEERAKARERDNLLADAF 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+L+AA+ LDGG E A FV K SG +D KT+LQ++ + +TP Y+ Sbjct: 121 EALLAAIALDGGWEAARNFVLPLLKS-VKASGVQNQDYKTDLQQYVQGRINLTPSYREVN 179 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 +GPDH+ +T+ V G+ SK Sbjct: 180 VTGPDHERTWTIEVWAGDALLGVGVGTSK 208 >gi|330814142|ref|YP_004358381.1| signal peptidase I [Candidatus Pelagibacter sp. IMCC9063] gi|327487237|gb|AEA81642.1| signal peptidase I [Candidatus Pelagibacter sp. IMCC9063] Length = 224 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 127/225 (56%), Gaps = 1/225 (0%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + +EK + F N + LEKALTH SI+ + ERLEF+GDR+LGL+I+T L Sbjct: 1 MDKNYLTKVEKILNIKFKNTNFLEKALTHKSITKISASNNERLEFIGDRVLGLVIATKLS 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG L + SLV+ +TCSQ+ +L+L +I +SS +K+ I D+ E Sbjct: 61 ILYPEDVEGSLDKKLASLVNKDTCSQIIEKLNLGKYILLSSSQQKNKIGHK-KIYGDLCE 119 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLI A+YLD G A FV W++ +S D+KT+LQE++ F V P YK Sbjct: 120 SLIGAVYLDKGFSEANKFVLSLWRENLKRSTIVEVDSKTQLQEYSLKFFKVLPIYKNLSN 179 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GP H P F + V+I+ G SK+ AEQ+AA+++LK + Sbjct: 180 KGPSHKPSFKISVKITNSKLCTGEGTSKKKAEQLAASKLLKTLNL 224 >gi|293406009|ref|ZP_06650001.1| rnc [Escherichia coli FVEC1412] gi|306814369|ref|ZP_07448531.1| ribonuclease III [Escherichia coli NC101] gi|291428217|gb|EFF01244.1| rnc [Escherichia coli FVEC1412] gi|305851763|gb|EFM52215.1| ribonuclease III [Escherichia coli NC101] gi|313648245|gb|EFS12689.1| ribonuclease III [Shigella flexneri 2a str. 2457T] gi|320176131|gb|EFW51198.1| Ribonuclease III [Shigella dysenteriae CDC 74-1112] gi|320662723|gb|EFX30062.1| ribonuclease III [Escherichia coli O55:H7 str. USDA 5905] gi|323156225|gb|EFZ42384.1| ribonuclease III [Escherichia coli EPECa14] gi|323173115|gb|EFZ58746.1| ribonuclease III [Escherichia coli LT-68] gi|323177303|gb|EFZ62891.1| ribonuclease III [Escherichia coli 1180] gi|326345056|gb|EGD68800.1| Ribonuclease III [Escherichia coli O157:H7 str. 1044] gi|332092616|gb|EGI97688.1| ribonuclease III [Shigella boydii 3594-74] gi|333000427|gb|EGK20009.1| ribonuclease III [Shigella flexneri VA-6] gi|333000857|gb|EGK20429.1| ribonuclease III [Shigella flexneri K-218] gi|333001660|gb|EGK21227.1| ribonuclease III [Shigella flexneri K-272] gi|333015936|gb|EGK35271.1| ribonuclease III [Shigella flexneri K-227] gi|333016828|gb|EGK36154.1| ribonuclease III [Shigella flexneri K-304] Length = 204 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 65/190 (34%), Positives = 98/190 (51%), Gaps = 6/190 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 ++ALTH S S + ERLEFLGD IL +I+ L++ F EG++S +LV T Sbjct: 2 QQALTHRSASSKH---NERLEFLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNT 58 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 +++ARE +L +R+ K SI AD VE+LI ++LD I+ + ++ Sbjct: 59 LAELAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWY 118 Query: 144 KQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200 + R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 119 QTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEP 178 Query: 201 AQGMDCSKRA 210 G S+R Sbjct: 179 VVGTGSSRRK 188 >gi|238650709|ref|YP_002916562.1| ribonuclease III [Rickettsia peacockii str. Rustic] gi|259646552|sp|C4K1R3|RNC_RICPU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238624807|gb|ACR47513.1| ribonuclease III [Rickettsia peacockii str. Rustic] Length = 227 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 114/224 (50%), Gaps = 5/224 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 + LEK + Y+F N+ LL +AL+H S+ ++ + YERLEFLGD +L L+I+ +L Sbjct: 2 ESFEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEIL 61 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F +F + EG L+ + LV ET V +L L ++I ++ + + Sbjct: 62 FRNFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYIIMTHGEEVAGGRDNLNNIENAT 121 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+LIAA+YLD IE ++K W + D KT LQEWA A P Y++ Sbjct: 122 EALIAAIYLDSNIETTHDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIK 181 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 R G H FTV+V++ G + + AE+ AA +L R Sbjct: 182 REGASHASTFTVLVKVKDYEQ-TGTGHAIKEAEKNAARSLLHRL 224 >gi|269926036|ref|YP_003322659.1| ribonuclease III [Thermobaculum terrenum ATCC BAA-798] gi|269789696|gb|ACZ41837.1| ribonuclease III [Thermobaculum terrenum ATCC BAA-798] Length = 234 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 114/224 (50%), Gaps = 8/224 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTL 58 S+ + TL++R+GY F N LL+ ALTH S ++ E+ ER EFLGD IL ++ Sbjct: 3 SSDSFITLQERLGYKFRNIELLKTALTHRSFANESLEKTETNERFEFLGDSILAFVVGEA 62 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF F A EG L+ LV + + ++R L + FI + R S S+ AD Sbjct: 63 LFRLFPRASEGILTRARAHLVGRKNLADISRTLGIGDFILLGKGARLSGSSQSESVLADA 122 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 +E+LIAA+YLD +E + V + + + ++ +D KT LQE +H + P Y Sbjct: 123 LEALIAAVYLDSDLETCRSVVFRLLRLSKEEIEHWLDVKDNKTRLQELSHRLYRTNPIYT 182 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V P F V V+++ AQG SK AEQ AA + L Sbjct: 183 VIAA--PPVRDNFIVQVKVND-VSAQGEGRSKSEAEQEAARKAL 223 >gi|118602619|ref|YP_903834.1| ribonuclease III [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567558|gb|ABL02363.1| RNAse III [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 221 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 114/220 (51%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L+K+I Y F + SLL+ ALTH S+ + + ERLEFLGD ILG++IS L+ F + Sbjct: 2 KKLQKKINYQFKDLSLLKLALTHCSMG---KNNNERLEFLGDSILGVIISKELYQRFPNI 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS + LV +T +Q++ L+L++ + + K SIQAD +E++ A+ Sbjct: 59 DEGKLSRLRSHLVRDQTLTQLSAGLELSNSLILGFGELKSGGYRRESIQADAIEAIFGAV 118 Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LD E T V ++ + +D KT+LQE+ V P+Y++T G D Sbjct: 119 LLDSNFETTSTVVLDLFEMLLNNISPDDSLKDPKTQLQEYLQKYGNVLPKYELTDTIGKD 178 Query: 185 HDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223 H+ FT+ + S + AEQ A +LK+ Sbjct: 179 HNAIFTINCLLKDQNLQVSQSAKSIKKAEQSCAQTLLKKL 218 >gi|115351064|ref|YP_772903.1| ribonuclease III [Burkholderia ambifaria AMMD] gi|115281052|gb|ABI86569.1| RNAse III [Burkholderia ambifaria AMMD] Length = 425 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPPSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 SKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|157964181|ref|YP_001499005.1| ribonuclease III [Rickettsia massiliae MTU5] gi|189043342|sp|A8F0M2|RNC_RICM5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157843957|gb|ABV84458.1| Ribonuclease III [Rickettsia massiliae MTU5] Length = 227 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 + TLEK + Y+F N+ LL +AL+H S+ ++ + YERLEFLGD +L L+I+ +L Sbjct: 2 ESFETLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEIL 61 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F +F + EG L+ + LV ET V +L L ++I ++ + + Sbjct: 62 FRNFANYNEGHLAKIRSYLVCKETICMVGAKLTLKNYIIMTHGEEVAGGRDNLNNIENAT 121 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+LIAA+YLD IE ++K W + D KT LQEWA A P Y++ Sbjct: 122 EALIAAIYLDSNIETTYDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIK 181 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 R G H FTV+V++ G + + AE+ AA +L R Sbjct: 182 REGASHSSTFTVLVKVKDYEQ-TGTGHAIKEAEKNAARSLLHRL 224 >gi|206559398|ref|YP_002230159.1| ribonuclease III [Burkholderia cenocepacia J2315] gi|206561200|ref|YP_002231965.1| ribonuclease III [Burkholderia cenocepacia J2315] gi|198035436|emb|CAR51312.1| ribonuclease III 2 [Burkholderia cenocepacia J2315] gi|198037242|emb|CAR53164.1| ribonuclease III 1 [Burkholderia cenocepacia J2315] Length = 409 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|260220751|emb|CBA28629.1| Ribonuclease 3 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 224 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 78/210 (37%), Positives = 113/210 (53%), Gaps = 6/210 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L++R+ + F+N SLL +ALTH S S + YERLEFLGD +LGL IS LL++ + Sbjct: 2 TALQQRLQHQFSNVSLLSRALTHRSFS---ADHYERLEFLGDSVLGLAISDLLYSRLGNL 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS +LV ET Q+A +L L +++ + SI AD +E++I A+ Sbjct: 59 PEGDLSRVRANLVRQETLHQLALKLGLPDVLKLGEGEMRSGGPKRASILADALEAIIGAV 118 Query: 127 YLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G A V + ++ + +DAKTELQEW + P Y V G Sbjct: 119 YLDAGFAKAQALVHRLFEAVEINPQMQAIGKDAKTELQEWLQGRKMKLPLYTVVGTIGAA 178 Query: 185 HDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 H F V E+ L ++ G+ S+RA EQ Sbjct: 179 HKQSFDVECEVPELRLSERGIGGSRRAGEQ 208 >gi|224476345|ref|YP_002633951.1| ribonuclease III [Staphylococcus carnosus subsp. carnosus TM300] gi|254807899|sp|B9DPJ2|RNC_STACT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|222420952|emb|CAL27766.1| putative ribonuclease III [Staphylococcus carnosus subsp. carnosus TM300] Length = 242 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 16/235 (6%) Query: 1 MSALRYSTLEKRIGYAFANR-----------SLLEKALTHSSISHSYQ----ESYERLEF 45 M+ + L + FA++ L ++A +HSS + + ERLEF Sbjct: 1 MTNHKKEALLQNFNKKFADKMHMLKLNYDHLPLYQQAFSHSSFINDFNMDRLAHNERLEF 60 Query: 46 LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 LGD +L L +S LF+ + EG L+ ++V + A ++ L I + K Sbjct: 61 LGDAVLELTVSRYLFDKYPELPEGNLTKMRATIVCEPSLVIFANKIQLNELILLGKGEEK 120 Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEW 164 S+ +D E+ + ALYLD G++ F ++ D KT+ QE Sbjct: 121 TGGRTRPSLVSDAFEAFVGALYLDQGLDAVWQFSEEVIFPHVEDDELMGVVDFKTQFQEL 180 Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 H Y++ GP H FT V + G A+G +K+ +EQ AA + Sbjct: 181 IHRLSKGNVTYRLIDEQGPAHHRLFTSEVLLEGEPVAKGQGRTKKESEQKAAEKA 235 >gi|148652186|ref|YP_001279279.1| ribonuclease III [Psychrobacter sp. PRwf-1] gi|148571270|gb|ABQ93329.1| RNAse III [Psychrobacter sp. PRwf-1] Length = 259 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 7/222 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +L+K++GY+F + SL + ALTH S + +YERLEFLGD +LG++I L+ + Sbjct: 28 SLQKQLGYSFNDTSLAKLALTHRSF--DGKINYERLEFLGDALLGMIIGEALYYQYPKQD 85 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ +LV E+ VA++L+L+S++ + RK SI AD VESLI A+Y Sbjct: 86 EGRLTRMRATLVRQESLVVVAQKLNLSSYLILGVGERKGGGRERASILADTVESLIGAIY 145 Query: 128 LDG-GIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LD ++ V ++ + + + +DAK+ LQEW P Y + G Sbjct: 146 LDSQSVDTVKACVLDWFAELIDNVNDQRVLKDAKSRLQEWLQGYKFELPNYDLLETQGNA 205 Query: 185 HDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + F V E+ P S+R AEQ A +++ + Sbjct: 206 PNQVFIVRCEVDVPHTTPIVESGESRRIAEQKTAEKMINQLN 247 >gi|121595570|ref|YP_987466.1| ribonuclease III [Acidovorax sp. JS42] gi|120607650|gb|ABM43390.1| RNAse III [Acidovorax sp. JS42] Length = 228 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 74/208 (35%), Positives = 107/208 (51%), Gaps = 6/208 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M STL++R+ + F++ SLL++ALTH S S + ERLEFLGD +L L +S+LLF Sbjct: 1 MQPASLSTLQQRLQHQFSDASLLQRALTHRSFS---ADHNERLEFLGDSVLSLAVSSLLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EGELS LV ++ Q+A L L +R+ K SI AD +E Sbjct: 58 RRMRDLPEGELSRVRALLVKQDSLHQIAVRLQLPPVLRLGEGEAKSGGKLRPSILADALE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD G E A V + ++ L + +DAKT LQEW + P+Y+V Sbjct: 118 AIIGAVYLDAGYECAEQLVHRLFEGVELSPRLQEAAKDAKTALQEWLQGRKMNLPQYRVV 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMD 205 +G H+ F V E+ +G Sbjct: 178 STTGAAHNQVFHVECEVVELQRVERGSG 205 >gi|118470776|ref|YP_886758.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155] gi|118172063|gb|ABK72959.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155] Length = 230 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 9/224 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 ++ L + +G A LL ALTH S S+ + ERLEFLGD +LGL I+ L++ Sbjct: 4 SHAALLEALGVALP-AELLTIALTHRSYSYENGGLPTNERLEFLGDAVLGLTITEELYHR 62 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVV 119 EG+L+ S+V+ + + V R L L + + + + +SI AD V Sbjct: 63 HPDRAEGDLAKLRASIVNTQALADVGRGLTDEGLGAHLFLGKGEENSGGADKSSILADGV 122 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 ESL+ A+YL+ G+ V + + + + + D K+ LQE A+ P Y V Sbjct: 123 ESLLGAIYLEHGLTVVREVILRLFGELLDTAPTLGAGLDWKSSLQELTAARGLGAPAYVV 182 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GPDHD F+ V I G+ +K+ AE AAA K Sbjct: 183 TS-TGPDHDKEFSATVVIGEAEYGHGVGRTKKEAELKAAASAYK 225 >gi|34580889|ref|ZP_00142369.1| ribonuclease III [Rickettsia sibirica 246] gi|157828029|ref|YP_001494271.1| ribonuclease III [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932727|ref|YP_001649516.1| ribonuclease III [Rickettsia rickettsii str. Iowa] gi|229586355|ref|YP_002844856.1| ribonuclease III [Rickettsia africae ESF-5] gi|166991034|sp|A8GQT8|RNC_RICRS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043343|sp|B0BW84|RNC_RICRO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|259646551|sp|C3PMF3|RNC_RICAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28262274|gb|EAA25778.1| ribonuclease III [Rickettsia sibirica 246] gi|157800510|gb|ABV75763.1| ribonuclease III [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907814|gb|ABY72110.1| ribonuclease III [Rickettsia rickettsii str. Iowa] gi|228021405|gb|ACP53113.1| Ribonuclease III [Rickettsia africae ESF-5] Length = 227 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 114/224 (50%), Gaps = 5/224 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 + LEK + Y+F N+ LL +AL+H S+ ++ + YERLEFLGD +L L+I+ +L Sbjct: 2 ESFEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEIL 61 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F +F + EG L+ + LV ET V +L L ++I ++ + + Sbjct: 62 FRNFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYIIMTHGEEVAGGRDNLNNIENAT 121 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+LIAA+YLD IE ++K W + D KT LQEWA A P Y++ Sbjct: 122 EALIAAIYLDSNIETTHDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIK 181 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 R G H FTV+V++ G + + AE+ AA +L R Sbjct: 182 REGASHSSTFTVLVKVKDYEQ-TGTGHAIKEAEKNAARSLLHRL 224 >gi|87311240|ref|ZP_01093362.1| ribonuclease III [Blastopirellula marina DSM 3645] gi|87285980|gb|EAQ77892.1| ribonuclease III [Blastopirellula marina DSM 3645] Length = 243 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 81/217 (37%), Positives = 120/217 (55%), Gaps = 3/217 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S E RIGY F +SLL+ ALTH+S + ES ERLEFLGD ILG ++ LF+ F Sbjct: 15 ISRCEVRIGYEFQEKSLLKSALTHASGASHRLESNERLEFLGDAILGRVVCEALFHSFPH 74 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ + +VS TC++++R L L F+ V + + + ADV E++IAA Sbjct: 75 FLEGDLTRIKSVVVSRLTCAKLSRVLGLEEFLIVGKGMSSSPSVPPS-LLADVFEAIIAA 133 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGG + A FV + + + G+ + K+ LQ++A + G TP Y + GP Sbjct: 134 IYLDGGPKPAEDFVLRNLEDEIELAVSGEAGANFKSALQQYAQREHGATPNYLLLDEKGP 193 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 DH F V +++G+ +K+ AEQ AA L Sbjct: 194 DHSKCFQVAAQVAGIRYVAAWGRNKKEAEQRAAQNAL 230 >gi|226365983|ref|YP_002783766.1| ribonuclease III [Rhodococcus opacus B4] gi|226244473|dbj|BAH54821.1| ribonuclease III [Rhodococcus opacus B4] Length = 252 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 9/227 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 +++L +G SLL ALTH S ++ + ERLEFLGD +LG+ ++ L+ Sbjct: 14 EDHASLLAALGVEIE-PSLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTEKLYL 72 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARE---LDLASFIRVSSDLRKDVCSFMTSIQADV 118 EG+L+ S+V+ ++VAR L + + + SI AD Sbjct: 73 AHPDKSEGDLAKIRASIVNMHALAEVARSLGEGGLGAHLLLGKGEEMTGGRDKPSILADG 132 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYK 176 +ES++ A++L+ GI+ A V + ++ + D KT LQE + P Y+ Sbjct: 133 MESILGAIHLEHGIDTARRVVLDLFSDLLQRAPRLGAGLDWKTSLQELTAERGVGVPAYE 192 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +T +GPDHD FT V + G G+ SK+ AEQ AA+ Sbjct: 193 ITA-TGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAASTAWNAL 238 >gi|111023481|ref|YP_706453.1| ribonuclease III [Rhodococcus jostii RHA1] gi|110823011|gb|ABG98295.1| ribonuclease III [Rhodococcus jostii RHA1] Length = 252 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 109/227 (48%), Gaps = 9/227 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 +++L +G SLL ALTH S ++ + ERLEFLGD +LG+ ++ L+ Sbjct: 14 EDHASLLAALGVEIE-PSLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTEKLYL 72 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVAR---ELDLASFIRVSSDLRKDVCSFMTSIQADV 118 EG+L+ S+V+ ++VAR E L + + + SI AD Sbjct: 73 AHPDKSEGDLAKIRASIVNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADG 132 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYK 176 +ES++ A++L+ GI+ A V + ++ + D KT LQE + P Y+ Sbjct: 133 MESILGAIHLEHGIDTARRVVLDLFSDLLQRAPRLGAGLDWKTSLQELTAERGVGVPAYE 192 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +T +GPDHD FT V + G G+ SK+ AEQ AA+ Sbjct: 193 ITA-TGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAASTAWNAL 238 >gi|84500562|ref|ZP_00998811.1| Ribonuclease III [Oceanicola batsensis HTCC2597] gi|84391515|gb|EAQ03847.1| Ribonuclease III [Oceanicola batsensis HTCC2597] Length = 226 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 112/207 (54%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + RIG+ F LL +++THSS+S ++ +RLEFLGDR+LGL+++ L Sbjct: 4 SADLQAFSSRIGHDFRRPELLVQSVTHSSVSSPTRDDNQRLEFLGDRVLGLVMAEALLAS 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 +A EG+L+ RFN+LV E C+ VARE+ L + +++ + ++ D +E++ Sbjct: 64 DRAASEGQLAPRFNALVRKEACADVAREVGLGAVLKLGRSEQLSGGRRKQALLGDAMEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YLDGG A + + W R + RDAKT LQEWA + P Y R G Sbjct: 124 IAAVYLDGGFAAARDMILRLWGARVAQVDVDARDAKTALQEWAQGRGLPPPSYIEVAREG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDH P F + + AQ SKR Sbjct: 184 PDHAPEFRIEARLVTGETAQASAGSKR 210 >gi|51473232|ref|YP_066989.1| ribonuclease III [Rickettsia typhi str. Wilmington] gi|81390308|sp|Q68XY5|RNC_RICTY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|51459544|gb|AAU03507.1| RNase D [Rickettsia typhi str. Wilmington] Length = 227 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 5/224 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLL 59 + LE +GY+F N+ LL +AL+H S+ + Y + YERLEFLGD +L LLI+ +L Sbjct: 2 ESFEKLETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLITEIL 61 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F +F++ KEG L+ + LV ET V +L L +I ++ + +V Sbjct: 62 FKNFENYKEGNLAKIRSYLVCKETICIVGTKLALKDYIIMTHGEEVAGGRDNPNNIENVT 121 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+LIAA+YLD IE+ ++K W + D KT LQEWA A P Y++ Sbjct: 122 EALIAAIYLDSNIEITHNIIEKLWAEFMKVQNLTDYDPKTALQEWAQASSNHLPIYRLIK 181 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 R G H FTV+V++ S + AE+ AA +L R Sbjct: 182 REGAAHSSIFTVLVKVKDYEQ-ICTGYSIKEAEKKAARCLLHRL 224 >gi|94311354|ref|YP_584564.1| ribonuclease III [Cupriavidus metallidurans CH34] gi|189043335|sp|Q1LKN1|RNC_RALME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|93355206|gb|ABF09295.1| RNase III [Cupriavidus metallidurans CH34] Length = 256 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 101/209 (48%), Gaps = 6/209 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S + ERLEFLGD +L ++ +LF F Sbjct: 1 MTLDALQQRLGYRFSKPELLQQALTHRS---HSAQHNERLEFLGDSVLNCAVADMLFGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L+ +R+ K SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLSDALRLGEGELKSGGFRRPSILADALEAIV 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G + A + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDAGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177 Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKR 209 G H +F V + L G S+R Sbjct: 178 GAAHSQQFEVECIVPKLEVRVFGTGASRR 206 >gi|320533365|ref|ZP_08034057.1| ribonuclease III [Actinomyces sp. oral taxon 171 str. F0337] gi|320134435|gb|EFW26691.1| ribonuclease III [Actinomyces sp. oral taxon 171 str. F0337] Length = 264 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 70/196 (35%), Positives = 96/196 (48%), Gaps = 7/196 (3%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL+ ALTH S +H + ERLEFLGD +LG++++ L+ EG+L+ Sbjct: 26 DTQLLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHSEVPEGQLAKMRA 85 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + VS + VAR+L L FI++ SI +D VE+LI A YL G+E Sbjct: 86 ATVSEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETR 145 Query: 137 TFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 T V + R L S + R D KT LQE A P Y+V +GPDH FT Sbjct: 146 TVVTRLV-SRFLDSARTRGAGLDWKTSLQELAAVHQLGNPVYEVAG-TGPDHQRVFTASA 203 Query: 194 EISGLAPAQGMDCSKR 209 + G QG SK+ Sbjct: 204 IVDGEVLGQGTGSSKK 219 >gi|148244713|ref|YP_001219407.1| ribonuclease III [Candidatus Vesicomyosocius okutanii HA] gi|146326540|dbj|BAF61683.1| ribonuclease III [Candidatus Vesicomyosocius okutanii HA] Length = 221 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 113/220 (51%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L+K+I Y F + SLL+ ALTH S + + + ERLEFLGD ILG+ IS L+ F Sbjct: 2 KKLQKKINYQFKDLSLLKLALTHRS---TGRNNNERLEFLGDSILGVAISKELYQRFPCV 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS + L+ +T Q+ L+L++ + + S K SIQAD VE++ A+ Sbjct: 59 DEGKLSRLRSHLIRGQTLVQLGTALELSNNLILGSGELKSGGYRRESIQADTVEAIFGAV 118 Query: 127 YLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LD E + +K ++ +D+KT+LQE+ + + P+YK+ +G D Sbjct: 119 LLDSNFETTNMVILGLFKVLLNSISPDDSLKDSKTQLQEYLQKRGNILPKYKLIDTTGKD 178 Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 H+ F V + + S + AEQ A +LK+ Sbjct: 179 HNAIFMVNCFLEDQKLQVKQSAKSIKKAEQFCAQILLKKL 218 >gi|329947035|ref|ZP_08294447.1| ribonuclease III [Actinomyces sp. oral taxon 170 str. F0386] gi|328526846|gb|EGF53859.1| ribonuclease III [Actinomyces sp. oral taxon 170 str. F0386] Length = 267 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 69/197 (35%), Positives = 98/197 (49%), Gaps = 7/197 (3%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL+ ALTH S +H + ERLEFLGD +LG++++ L+ + EG+L+ Sbjct: 26 DAGLLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHATVPEGQLAKMRA 85 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + VS + VAR+L L FI++ SI +D VE+LI A YL G+E Sbjct: 86 ATVSEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETR 145 Query: 137 TFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 T V + R L S + R D KT LQE A P Y+V+ +GPDH FT Sbjct: 146 TVVTRLV-SRFLDSARTRGAGLDWKTSLQELTAAHQLGNPGYEVSG-TGPDHQRVFTASA 203 Query: 194 EISGLAPAQGMDCSKRA 210 + G +G SK+ Sbjct: 204 VVDGQVMGRGTGSSKKI 220 >gi|293394829|ref|ZP_06639119.1| ribonuclease III [Serratia odorifera DSM 4582] gi|291422580|gb|EFE95819.1| ribonuclease III [Serratia odorifera DSM 4582] Length = 204 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 66/189 (34%), Positives = 97/189 (51%), Gaps = 6/189 (3%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALTH S S + ERLEFLGD IL +I+ L++ F EG++S +LV T Sbjct: 3 QALTHRSASSKH---NERLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTL 59 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 +++ARE DL +R+ K SI AD VE+LI ++LD I+ + +++ Sbjct: 60 AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVERLILDWYR 119 Query: 145 QRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201 R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 120 SRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEPV 179 Query: 202 QGMDCSKRA 210 G S+R Sbjct: 180 VGTGSSRRK 188 >gi|269302927|gb|ACZ33027.1| ribonuclease III [Chlamydophila pneumoniae LPCoLN] Length = 237 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 3/226 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTL 58 + + +E ++ + F LLE ALTH S + E ERLEFLGD +LGL+++ Sbjct: 3 PPIDITAIEAKLNFTFTQPKLLEIALTHPSYKNESAVQIEDSERLEFLGDAVLGLIVTEH 62 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF F S EG LS SLV+A+ C + L + ++ + + S A++ Sbjct: 63 LFLLFPSMDEGTLSTARASLVNAKACCRYTTTLGIGDYLLIGKGEKIQSERGRLSAYANL 122 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ES++ A+YLDGG+ A R + K LQ++ +F V P Y+ T Sbjct: 123 FESILGAVYLDGGLSPARKLTVPLLPPREEILPLMSGNPKNLLQQFTQKQFRVLPVYQST 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + + + + V ++ +G SK+ AE++AA + L G Sbjct: 183 AVTDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQQALDTYG 228 >gi|15617978|ref|NP_224262.1| ribonuclease III [Chlamydophila pneumoniae CWL029] gi|15835590|ref|NP_300114.1| ribonuclease III [Chlamydophila pneumoniae J138] gi|16752990|ref|NP_445263.1| ribonuclease III [Chlamydophila pneumoniae AR39] gi|7531191|sp|Q9Z9C7|RNC_CHLPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|4376309|gb|AAD18207.1| Ribonuclease III [Chlamydophila pneumoniae CWL029] gi|7189635|gb|AAF38526.1| ribonuclease III [Chlamydophila pneumoniae AR39] gi|8978428|dbj|BAA98265.1| ribonuclease III [Chlamydophila pneumoniae J138] Length = 237 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 3/226 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTL 58 + + +E ++ + F LLE ALTH S + E ERLEFLGD +LGL+++ Sbjct: 3 PPIDITAIEAKLNFTFTQPKLLEIALTHPSYKNESAVQIEDSERLEFLGDAVLGLIVTEH 62 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF F S EG LS SLV+A+ C + L + ++ + + S A++ Sbjct: 63 LFLLFPSMDEGTLSTARASLVNAKACCRYTTMLGIGDYLLIGKGEKIQSERGRLSAYANL 122 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ES++ A+YLDGG+ A R + K LQ++ +F V P Y+ T Sbjct: 123 FESILGAVYLDGGLSPARKLTVPLLPPREEILPLMSGNPKNLLQQFTQKQFRVLPVYQST 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + + + + V ++ +G SK+ AE++AA + L G Sbjct: 183 AVTDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQQALDTYG 228 >gi|212702556|ref|ZP_03310684.1| hypothetical protein DESPIG_00579 [Desulfovibrio piger ATCC 29098] gi|212673997|gb|EEB34480.1| hypothetical protein DESPIG_00579 [Desulfovibrio piger ATCC 29098] Length = 243 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 107/225 (47%), Gaps = 6/225 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTL 58 SA +E+ + Y F+ + ALTHSS ++ + Q ERLEFLGD +L L IS Sbjct: 12 SAADLERIERILDYHFSRPERVALALTHSSWANEHGLGQAHNERLEFLGDAVLELCISWE 71 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF F A+EG+++ + LV + +Q ARE + +R+ + ++ +DV Sbjct: 72 LFTRFPQAREGDMTRVRSQLVGTTSLAQRARETGIDQLLRLGRGEEQQGGRSRDAVLSDV 131 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS---GKFRRDAKTELQEWAHAKFGVTPEY 175 E+++A++Y DGG A V + + + +D KT LQE + A F P Y Sbjct: 132 FEAVLASVYEDGGYAAAQKVVARIFGTLLDEVSVGKPKTKDFKTSLQERSVALFHDRPVY 191 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP+H FTV V + S + AEQ AA L Sbjct: 192 TTLACEGPEHARHFTVQVSLPSGQQFTASGSSCKKAEQEAARLAL 236 >gi|189345713|ref|YP_001942242.1| Ribonuclease III [Chlorobium limicola DSM 245] gi|189339860|gb|ACD89263.1| Ribonuclease III [Chlorobium limicola DSM 245] Length = 273 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 6/210 (2%) Query: 18 ANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 +L ALTH S++H ES +RLEFLGD +L ++IS L+ F ++ EG+LS Sbjct: 51 NEPALYLTALTHRSVTHDASVPGTESNQRLEFLGDAVLDMVISEYLYRSFPNSAEGDLSS 110 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 +V+ ++ + A+ + L +++ + + S AD ESL A+YLD G++ Sbjct: 111 NRAKIVNRKSLAGFAQTMGLGNYLIIGESADCNKIRTSESALADAFESLTGAIYLDKGLD 170 Query: 134 VAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 FV K + + K+ L E+ + P Y V + G +H+ FT+ Sbjct: 171 AVRAFVMKQVIEHVDFKTIVASEHNYKSRLIEYTQSHHIPPPVYTVIAQDGAEHEKVFTI 230 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V +G + +G K+ AEQ+AA E ++ Sbjct: 231 EVSCAGCSCGRGSAPRKKDAEQLAAKEAVE 260 >gi|166154508|ref|YP_001654626.1| ribonuclease III [Chlamydia trachomatis 434/Bu] gi|255348658|ref|ZP_05380665.1| ribonuclease III [Chlamydia trachomatis 70] gi|255503198|ref|ZP_05381588.1| ribonuclease III [Chlamydia trachomatis 70s] gi|301335768|ref|ZP_07224012.1| ribonuclease III [Chlamydia trachomatis L2tet1] gi|238687367|sp|B0B7L3|RNC_CHLT2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|165930496|emb|CAP03989.1| ribonuclease III [Chlamydia trachomatis 434/Bu] gi|289525336|emb|CBJ14812.1| ribonuclease III [Chlamydia trachomatis Sweden2] gi|296434887|gb|ADH17065.1| ribonuclease III [Chlamydia trachomatis E/150] gi|296438607|gb|ADH20760.1| ribonuclease III [Chlamydia trachomatis E/11023] Length = 231 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 3/221 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLL 59 + +E ++ + F++ LL ALTH S + + +E ERLEFLGD +LGL+++ L Sbjct: 4 TVDIQAIESKLNFTFSHPRLLITALTHPSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHL 63 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F + EG LS +LV+AE C + ++L L + + + S A++ Sbjct: 64 FLLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLF 123 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+++ A+YLDGG+ A + + + K LQ++ V P YK Sbjct: 124 EAILGAVYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALP 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 D P + V V ++G +G SK+ AE++AA + L Sbjct: 184 WKSEDGSPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224 >gi|15827877|ref|NP_302140.1| ribonuclease III [Mycobacterium leprae TN] gi|221230354|ref|YP_002503770.1| ribonuclease III [Mycobacterium leprae Br4923] gi|7531192|sp|O69469|RNC_MYCLE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|3150224|emb|CAA19196.1| ribonuclease III [Mycobacterium leprae] gi|13093430|emb|CAC30612.1| RNAse III [Mycobacterium leprae] gi|219933461|emb|CAR71754.1| RNAse III [Mycobacterium leprae Br4923] Length = 238 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 106/213 (49%), Gaps = 8/213 (3%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LL ALTH S ++ + + ERLEFLGD +L L I+ LF+ EG+L+ S+ Sbjct: 19 ELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLSLTITDELFHRHPDRSEGDLAKLRASV 78 Query: 79 VSAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 V+ + + VAR L L ++ + + +SI AD +ESL+ A+YL GIEVA Sbjct: 79 VNTQALAYVARNLSDGGLGVYLLLGRGETNTGGADKSSILADGMESLLGAIYLHHGIEVA 138 Query: 136 GTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + + + + D KT LQE A+ P Y VT +GPDHD FT VV Sbjct: 139 RQVILRLFGTLLDAAPTLGAGLDWKTSLQELTAARGMGVPSYVVTS-TGPDHDKEFTAVV 197 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 + G+ SK+ AEQ AA+ K + Sbjct: 198 VVMDTEYGSGIGHSKKEAEQKAASAAWKALDVL 230 >gi|260828679|ref|XP_002609290.1| hypothetical protein BRAFLDRAFT_86799 [Branchiostoma floridae] gi|229294646|gb|EEN65300.1| hypothetical protein BRAFLDRAFT_86799 [Branchiostoma floridae] Length = 1490 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 9/230 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLL 59 S R + E R G F + LL +A TH + ++ +RLEFLGD ++ ++ S L Sbjct: 1195 SDERLTEFESRCGMEFKHVRLLARAFTHRTVGFNNLTLGHNQRLEFLGDSVMQMVSSEYL 1254 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + HF EG LS+ +SLV+ T + V+++L + +I S R+ S AD++ Sbjct: 1255 YKHFPDHHEGHLSLLRSSLVNNRTQALVSQDLGMEEYIISSDKARQGKLSLRQKTLADLM 1314 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVT 172 E+ + ALY+D G+E F++ + R + + D K++LQ+ K Sbjct: 1315 EAFMGALYVDQGLEYVCVFMNVCFFPRLREFIMNQEWNDPKSQLQQCCLTLRTEGKEPDI 1374 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P YK+ ++GP H ++TV V G G+ S + AE AA + LK Sbjct: 1375 PFYKILDKAGPSHARKYTVAVYFKGERIGTGVGSSIQQAEMAAARDALKN 1424 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 47/203 (23%), Positives = 78/203 (38%), Gaps = 59/203 (29%) Query: 1 MSALRY----STLEKRIGYAFANRSLLEKALT-------------HS--SISHSYQ---- 37 M LRY + L++ +G F +RSLLE ALT H+ S+S+ Sbjct: 992 MHYLRYHACLNELDQLLGSKFEDRSLLELALTHPSHHLNFGMNPDHARNSLSNCGMRQPK 1051 Query: 38 ------------------------------------ESYERLEFLGDRILGLLISTLLFN 61 ERLEFLGD ++ L S+ L+ Sbjct: 1052 YGDRRIHHVHTRKKGINTLINIMSRMGHDEETPSLINHNERLEFLGDAVVEFLTSSHLYF 1111 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +EG L+ ++V + + +A++L L F+ + S + A+ +E+ Sbjct: 1112 MFPDLEEGGLATYRTAIVQNQHLAVLAKKLRLDEFMLYAHGPDLCRESDLRHAMANCLEA 1171 Query: 122 LIAALYLDGGIEVAGTFVDKYWK 144 LI A+Y+ G+E + Sbjct: 1172 LIGAMYMQQGLEETKKLFCRLLF 1194 >gi|253999489|ref|YP_003051552.1| ribonuclease III [Methylovorus sp. SIP3-4] gi|313201514|ref|YP_004040172.1| ribonuclease III [Methylovorus sp. MP688] gi|253986168|gb|ACT51025.1| ribonuclease III [Methylovorus sp. SIP3-4] gi|312440830|gb|ADQ84936.1| ribonuclease III [Methylovorus sp. MP688] Length = 224 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 96/207 (46%), Gaps = 6/207 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + + LE+ +G+ F N LL +ALTH S + ERLEFLGD +L +I+ LF F Sbjct: 1 MSQTGLERLLGHDFTNGQLLTQALTHRS---HSARNNERLEFLGDGVLNCIIANQLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS LV T ++A+ L L +++ K S+ AD +E++I Sbjct: 58 SKLPEGDLSRLRAHLVKEPTLCEIAQRLQLGDMLKLGEGELKSGGWRRPSVLADALEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G A V + + A+ +DAK+ LQE+ + PEY VT Sbjct: 118 GAVFLDAGFIAAEALVVRLYTPLLEAIDPKSIGKDAKSLLQEYLQGRKIALPEYTVTATE 177 Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCS 207 G H F V I G S Sbjct: 178 GEAHCQLFKVDCTIPKLKLVTHGEGSS 204 >gi|241763850|ref|ZP_04761895.1| Ribonuclease III [Acidovorax delafieldii 2AN] gi|241366894|gb|EER61308.1| Ribonuclease III [Acidovorax delafieldii 2AN] Length = 227 Score = 224 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 75/211 (35%), Positives = 109/211 (51%), Gaps = 6/211 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S L+ R+ + F+N SLL++A+TH S S + ERLEFLGD +L L +++LL+ Sbjct: 5 LSALQDRLQHHFSNASLLQRAITHRSFS---ADHNERLEFLGDSVLNLAVASLLYQRLSD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS +LV +T Q+A L ++ +R+ K SI AD +E+LI A Sbjct: 62 LPEGDLSRVRANLVKQDTLHQLALRLQVSDVLRLGEGESKSGGQNRPSILADALEALIGA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD G A V + ++ + +D KT LQEW + P Y V G Sbjct: 122 VYLDAGYSRAEALVHRLFQGVEINPQMQAAAKDPKTALQEWLQGRKMKLPHYSVVATVGA 181 Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 H F V EI+ L A+ G+ S+RA EQ Sbjct: 182 AHRQTFDVECEIAELGLAERGIGGSRRAGEQ 212 >gi|238896018|ref|YP_002920754.1| ribonuclease III [Klebsiella pneumoniae NTUH-K2044] gi|238548336|dbj|BAH64687.1| ribonuclease III [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 204 Score = 224 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 65/190 (34%), Positives = 98/190 (51%), Gaps = 6/190 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 ++ALTH S S + ERLEFLGD IL +I+ L++ F EG++S +LV T Sbjct: 2 QQALTHRSASSKH---NERLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNT 58 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 +++ARE +L +R+ K SI AD VE+LI ++LD I+ + ++ Sbjct: 59 LAEIAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQNVERLILSWY 118 Query: 144 KQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200 + R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 119 QTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEP 178 Query: 201 AQGMDCSKRA 210 G S+R Sbjct: 179 VVGTGSSRRK 188 >gi|221201351|ref|ZP_03574390.1| ribonuclease III [Burkholderia multivorans CGD2M] gi|221208831|ref|ZP_03581829.1| ribonuclease III [Burkholderia multivorans CGD2] gi|221171287|gb|EEE03736.1| ribonuclease III [Burkholderia multivorans CGD2] gi|221178619|gb|EEE11027.1| ribonuclease III [Burkholderia multivorans CGD2M] Length = 406 Score = 224 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|33241390|ref|NP_876331.1| ribonuclease III [Chlamydophila pneumoniae TW-183] gi|33235898|gb|AAP97988.1| ribonuclease III [Chlamydophila pneumoniae TW-183] Length = 237 Score = 224 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 3/226 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTL 58 + + +E ++ + F LLE ALTH S + E ERLEFLGD +LGL+++ Sbjct: 3 PPIDITAIEAKLNFTFTQPKLLEIALTHPSYKNESAVQIEDSERLEFLGDAVLGLIVTEH 62 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF F S EG LS SLV+A+ C + L + ++ + + S A++ Sbjct: 63 LFLLFPSMDEGTLSTARASLVNAKACCRYTTVLGIGDYLLIGKGEKIQSERGRLSAYANL 122 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ES++ A+YLDGG+ A R + K LQ++ +F V P Y+ T Sbjct: 123 FESILGAVYLDGGLSPARKLTVPLLPPREEILPLMSGNPKNLLQQFTQKQFRVLPVYQST 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + + + + V ++ +G SK+ AE++AA + L G Sbjct: 183 AVTDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQQALDTYG 228 >gi|221068688|ref|ZP_03544793.1| Ribonuclease III [Comamonas testosteroni KF-1] gi|264677118|ref|YP_003277024.1| ribonuclease III [Comamonas testosteroni CNB-2] gi|299530659|ref|ZP_07044074.1| ribonuclease III [Comamonas testosteroni S44] gi|220713711|gb|EED69079.1| Ribonuclease III [Comamonas testosteroni KF-1] gi|262207630|gb|ACY31728.1| ribonuclease III [Comamonas testosteroni CNB-2] gi|298721175|gb|EFI62117.1| ribonuclease III [Comamonas testosteroni S44] Length = 227 Score = 224 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 76/209 (36%), Positives = 105/209 (50%), Gaps = 6/209 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L++R+ + FAN +LL++A+TH S S ++ ERLEFLGD +L L IS+LL+ S Sbjct: 7 ALQQRLQHQFANPALLQRAITHRSFS---ADNNERLEFLGDSVLSLAISSLLYAKLASMP 63 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS +LV T ++A +L L +R+ K SI AD VE+LI A+Y Sbjct: 64 EGDLSRVRANLVKEGTLHKIALKLQLPDLLRLGEGEAKSGGKQRPSILADAVEALIGAVY 123 Query: 128 LDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD G V ++ + +D KT LQE K P+Y V SG H Sbjct: 124 LDAGFAAGEKVVHHLFEGVDINPHMRAADKDPKTALQELLQGKRMKLPQYHVVEISGAAH 183 Query: 186 DPRFTVVVEISG-LAPAQGMDCSKRAAEQ 213 F V I+ AQG S+R EQ Sbjct: 184 KQTFKVECTIAEWNISAQGSGASRRMGEQ 212 >gi|167041438|gb|ABZ06190.1| putative RNase3 domain protein [uncultured marine microorganism HF4000_006O13] gi|167041995|gb|ABZ06732.1| putative RNase3 domain protein [uncultured marine microorganism HF4000_141E02] Length = 224 Score = 224 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 72/217 (33%), Positives = 106/217 (48%), Gaps = 7/217 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E+R Y F + LL+ ALTH S ++ ERLEFLGD L L+IS LL+ + EG Sbjct: 9 EQRFHYRFKDDILLQTALTHRS---HSVDNNERLEFLGDAALDLVISELLYQSYSEQTEG 65 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 LS +SLV T +++A+ELD+ ++ + S+ +D +E++I A++LD Sbjct: 66 YLSRMRSSLVKGNTLAELAKELDVGGYLILGKGENTSGGRERLSLLSDTLEAMIGAIFLD 125 Query: 130 GGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG + K + R AL +D K+ LQE P Y + G DH+ Sbjct: 126 GGYVAVKNVIIKIFDSRIQALDPKSEHKDHKSVLQEKLQGVKQGLPVYSLVRSVG-DHNK 184 Query: 188 RFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G Q + R AEQ AA++ L+ Sbjct: 185 TFVVECSIKSGEIVTQASGKTLRVAEQKAASKALQAM 221 >gi|332529447|ref|ZP_08405406.1| ribonuclease III [Hylemonella gracilis ATCC 19624] gi|332041093|gb|EGI77460.1| ribonuclease III [Hylemonella gracilis ATCC 19624] Length = 223 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 73/209 (34%), Positives = 109/209 (52%), Gaps = 6/209 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ + F + +LL++ALTH S + ERLEFLGD +L L ++ LL+ + Sbjct: 2 RLQDHLQRPFTDAALLQRALTHRSF---CADHNERLEFLGDSVLNLAVADLLYQRLHALP 58 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS +LV ET Q+A EL L+ +R+ + + SI AD +E+LI A+Y Sbjct: 59 EGDLSRIRANLVKQETLHQLAMELGLSDLLRLGEGELRSGGNKRPSILADALEALIGAVY 118 Query: 128 LDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD G A V +++ + +D KTELQEW A+ P+Y+V +G H Sbjct: 119 LDAGYAAAQALVHHLYEKVEVTPQMQASAKDPKTELQEWLQARKLKLPQYRVVATTGAAH 178 Query: 186 DPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 F V E+S + G+ S+RA EQ Sbjct: 179 RQTFDVECEVSEFQLTERGIGGSRRAGEQ 207 >gi|161525340|ref|YP_001580352.1| ribonuclease III [Burkholderia multivorans ATCC 17616] gi|189349923|ref|YP_001945551.1| ribonuclease III [Burkholderia multivorans ATCC 17616] gi|160342769|gb|ABX15855.1| Ribonuclease III [Burkholderia multivorans ATCC 17616] gi|189333945|dbj|BAG43015.1| ribonuclease III [Burkholderia multivorans ATCC 17616] Length = 406 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|295690019|ref|YP_003593712.1| ribonuclease III [Caulobacter segnis ATCC 21756] gi|295431922|gb|ADG11094.1| ribonuclease III [Caulobacter segnis ATCC 21756] Length = 231 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 124/204 (60%), Gaps = 3/204 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+RIG+ F +R LLE+ALTH+S+ ++ E LEF+GDR+LGLL + L F A Sbjct: 11 LERRIGHQFEDRELLERALTHASVGDGAKKVRDNEVLEFIGDRVLGLLAAEALAQRFPKA 70 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 KEGEL+ R N+LVS ETC++VAR +L +R+S+ K SI A E+L+AAL Sbjct: 71 KEGELAPRLNALVSRETCARVARVAELGPALRLSASSSKIGGRETESILAGATEALMAAL 130 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 Y DGG++ A W ++G+ RD KT LQEWA K P Y+V R+GPDH Sbjct: 131 YQDGGLDAARRVFLSLWADEFDRAGEGRPRDPKTALQEWAQGKGRPLPTYRVLDRTGPDH 190 Query: 186 DPRFTVVVEISGLAPAQGMDCSKR 209 P FTV V ++G+ PA S++ Sbjct: 191 APVFTVEVVVAGVDPAMAKGKSRQ 214 >gi|255506876|ref|ZP_05382515.1| ribonuclease III [Chlamydia trachomatis D(s)2923] Length = 231 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 3/221 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLL 59 + +E ++ + F++ LL ALTH S + + +E ERLEFLGD +LGL+++ L Sbjct: 4 TVDIQAIESKLNFTFSHPKLLITALTHPSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHL 63 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F + EG LS +LV+AE C + ++L L + + + S A++ Sbjct: 64 FLLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLF 123 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+++ A+YLDGG+ A + + + K LQ++ V P YK Sbjct: 124 EAILGAVYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALP 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 D P + V V ++G +G SK+ AE++AA + L Sbjct: 184 WKSEDGSPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224 >gi|255066864|ref|ZP_05318719.1| ribonuclease III [Neisseria sicca ATCC 29256] gi|255048939|gb|EET44403.1| ribonuclease III [Neisseria sicca ATCC 29256] Length = 239 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 64/219 (29%), Positives = 114/219 (52%), Gaps = 6/219 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++ ++GY F + +LL++ALTH S + ++ ER EF+GD IL ++ +LF+ F Sbjct: 11 HAAIQNKLGYHFKDTALLQQALTHRSY---HAKNNERFEFVGDSILNYTVAKMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + +R ++ +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFAEAEKVVRHLFAERVKRADFKTQGKDNKTALQEALQARRLALPKYRIEEQIGH 187 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 +D F + ++ L + S++ AEQ AA E L+ Sbjct: 188 ANDSMFLISCDLGELGFICKAQGSSRKVAEQQAAKEALQ 226 >gi|166155383|ref|YP_001653638.1| ribonuclease III [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|238687467|sp|B0BBS8|RNC_CHLTB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|165931371|emb|CAP06943.1| ribonuclease III [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 231 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 109/221 (49%), Gaps = 3/221 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLL 59 + +E ++ + F++ LL ALTHSS + + +E ERLEFLGD +LGL+++ L Sbjct: 4 TVDIQAIESKLNFTFSHPRLLITALTHSSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHL 63 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F + EG LS +LV+AE C + ++L L + + + S A++ Sbjct: 64 FLLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLF 123 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+++ A+YLDGG+ A + + + K LQ++ V P YK Sbjct: 124 EAILGAVYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALP 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 D P + V V ++G +G SK+ AE++AA + L Sbjct: 184 WKSEDGSPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224 >gi|219848618|ref|YP_002463051.1| Ribonuclease III [Chloroflexus aggregans DSM 9485] gi|254807244|sp|B8GAM6|RNC_CHLAD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|219542877|gb|ACL24615.1| Ribonuclease III [Chloroflexus aggregans DSM 9485] Length = 229 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 7/210 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLIST 57 R + LE+ +G F +R LL+ AL H S+ + ERLEFLGD +L + +T Sbjct: 3 ERLAELERALGITFRDRKLLQTALMHRSLFNEQPHLLSNLSDNERLEFLGDSVLHFVTTT 62 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF F E L+ +LVS + ++ A L+L + +S + + AD Sbjct: 63 WLFQQFPHQNESTLTSWRAALVSTKGLAECAATLNLGQYAFLSRGEDTPKGRQRSKLLAD 122 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 + E++I A+YLD G+E A F++ + +R D T LQE ++ P+Y + Sbjct: 123 LFEAVIGAIYLDQGLEAARAFIEPFLHERIGTLQTAVLDPTTRLQEIVQSRHKQLPKYYL 182 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 GPDH + + V + G G S Sbjct: 183 IDERGPDHQREYVMAVTVEGHEY-TGTGPS 211 >gi|221214088|ref|ZP_03587061.1| ribonuclease III [Burkholderia multivorans CGD1] gi|221166265|gb|EED98738.1| ribonuclease III [Burkholderia multivorans CGD1] Length = 402 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|262277162|ref|ZP_06054955.1| ribonuclease III [alpha proteobacterium HIMB114] gi|262224265|gb|EEY74724.1| ribonuclease III [alpha proteobacterium HIMB114] Length = 225 Score = 224 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 1/221 (0%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + +EK + F N+SL+E+A TH S S + + ERLEFLGDR+LGL+I++ L Sbjct: 1 MKKNDLAQVEKILEIKFNNKSLIEQAFTHKSKSVNINNNNERLEFLGDRVLGLVIASYLN 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +++ EG L + SLV+ ETCS++ L++ F+ +S +K + I D+ E Sbjct: 61 DNYPKDSEGVLDKKLASLVNKETCSKIISSLEIDRFLSLSE-AQKQNKAGNKKILGDLCE 119 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 S+I A+++D G E F+ K WK+ + + D KT+LQE++ + P YK Sbjct: 120 SIIGAVFMDKGFEQTKKFILKIWKENLKNTTQVFIDPKTKLQEYSLKLYKKLPVYKYISN 179 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 SGP H P F V V I SK+ AE AA ++++ Sbjct: 180 SGPSHKPNFRVSVSIEQSKSFVATGTSKKNAETNAAKKLIE 220 >gi|260576288|ref|ZP_05844280.1| ribonuclease III [Rhodobacter sp. SW2] gi|259021556|gb|EEW24860.1| ribonuclease III [Rhodobacter sp. SW2] Length = 231 Score = 224 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 77/195 (39%), Positives = 107/195 (54%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + RIG+ F LL +A+THSSIS + +RLEFLGDR+LGL+++ L Sbjct: 4 SAELQAFCGRIGHVFRQPELLLRAVTHSSISSKTRPDNQRLEFLGDRVLGLVMAEALLTA 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 +A EG+L+ RFN+LV E C+ VAR+L L +++ ++ D +E++ Sbjct: 64 DTAASEGQLAPRFNALVRKEACADVARDLGLGEVMKLGRSEMMSGGRRKDALLGDALEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YLD G + A V + W R RDAKT LQEWA A+ P Y R G Sbjct: 124 IAAVYLDSGFDAARGLVLRLWGGRIGAVQSDARDAKTSLQEWAQARGLPPPAYIELGRDG 183 Query: 183 PDHDPRFTVVVEISG 197 PDH P+FTV V + Sbjct: 184 PDHQPQFTVEVRLEN 198 >gi|149913470|ref|ZP_01902003.1| 4'-phosphopantetheinyl transferase [Roseobacter sp. AzwK-3b] gi|149812590|gb|EDM72419.1| 4'-phosphopantetheinyl transferase [Roseobacter sp. AzwK-3b] Length = 227 Score = 224 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 116/206 (56%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E+R+G+ F +LL +A+THSS++ ++ +RLEFLGDR+LGL+++ L Sbjct: 4 SAELKAFEERLGHRFEQSALLVRAVTHSSMASPTRDDNQRLEFLGDRVLGLVMAEALLER 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 SA+EG L+ RFN+LV E C+ VARE+ L +++ ++ D +E++ Sbjct: 64 DRSAEEGLLAPRFNALVRKEACADVAREIALGDVLKLGRSEMLSGGRRKQALLGDAMEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+Y D G +VA V + W +R + RDAKT LQEWA A+ P Y T RSG Sbjct: 124 IAAVYRDAGFDVAKAVVLRLWGKRIDSVKEDARDAKTALQEWAQARGQTPPAYVETARSG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSK 208 PDH P+FT+ + SK Sbjct: 184 PDHAPQFTIEARLQNGEVETASAGSK 209 >gi|167948160|ref|ZP_02535234.1| ribonuclease III [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 225 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 72/205 (35%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S+L + +GY F N +LL++ALTH S+ ++ ER EFLGD ILG +I+ LF F+ Sbjct: 5 LSSLCRALGYEFHNPALLQQALTHRSVG---GKNNERFEFLGDAILGFVIADALFEQFER 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EG+LS +SLV ET +++AR L L +R+ + SI AD VE+++AA Sbjct: 62 ASEGQLSRLRSSLVKRETLAKIARGLKLGDHLRLGPGELRSGGQTRDSILADAVEAILAA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD + + ++ L ++D KT LQE A+ P Y+V +G Sbjct: 122 IYLDSDYSTTRRVILQIFESLLTGLDLNTQQKDPKTRLQEHLQARKIGLPSYQVIDITGD 181 Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCS 207 H FTV L G S Sbjct: 182 QHAQTFTVKCRSEALEQESDGSGSS 206 >gi|257791118|ref|YP_003181724.1| ribonuclease III [Eggerthella lenta DSM 2243] gi|317488154|ref|ZP_07946728.1| ribonuclease III [Eggerthella sp. 1_3_56FAA] gi|257475015|gb|ACV55335.1| ribonuclease III [Eggerthella lenta DSM 2243] gi|316912741|gb|EFV34276.1| ribonuclease III [Eggerthella sp. 1_3_56FAA] Length = 281 Score = 224 bits (571), Expect = 9e-57, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNH 62 + + ++ +GY FA+ LL A+TH S + S + SYERLEFLGD ILG +++T+ F+ Sbjct: 10 KLAVAQEILGYRFADEQLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVATIAFDR 69 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ +LVS + S VA L A I S + S +V E++ Sbjct: 70 FHDLDEGGLTRIKVALVSGASLSDVAERLGFADVIVFGSSETGTGRRGLHSALENVYEAV 129 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +AAL+LDGGIE A FV R + + K+ LQE G+TP YK+ Sbjct: 130 VAALFLDGGIEAAEGFVRATLIPRMSADMAREPENPKSALQEKLQED-GITPTYKLVETQ 188 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP HD F V A+G +K+ AE AA L R G Sbjct: 189 GPPHDRTFVAQVFAGSQGLARGTGRTKKEAESQAAKSTLARLG 231 >gi|253997000|ref|YP_003049064.1| ribonuclease III [Methylotenera mobilis JLW8] gi|253983679|gb|ACT48537.1| ribonuclease III [Methylotenera mobilis JLW8] Length = 230 Score = 224 bits (571), Expect = 9e-57, Method: Composition-based stats. Identities = 70/210 (33%), Positives = 101/210 (48%), Gaps = 6/210 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L +R+ + F N SLL +ALTH S + ++ ERLEFLGD L +I+ L+ F Sbjct: 1 MSKQELLRRLSHQFVNESLLTQALTHRSYA---GQNNERLEFLGDGALNFIIAHQLYQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS LV T S++A L+L + + K SI AD +E++I Sbjct: 58 PKLAEGDLSRLRAQLVKEATLSEIALSLNLGDALLLGEGELKSAGWRRPSILADALEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G E A TFV + K + +D K+ LQE ++ PEY V S Sbjct: 118 GAVYLDSGFEAAQTFVLGLYAGKLETIDPKVIDKDPKSLLQELLQSRKIAVPEYTVIHTS 177 Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRA 210 G H+ +F V + G S+R Sbjct: 178 GEAHEQKFVVECLVEKHQIRTVGEGRSRRI 207 >gi|186475606|ref|YP_001857076.1| ribonuclease III [Burkholderia phymatum STM815] gi|184192065|gb|ACC70030.1| Ribonuclease III [Burkholderia phymatum STM815] Length = 441 Score = 224 bits (571), Expect = 9e-57, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 9 MPLSPLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 65 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD +E+++ Sbjct: 66 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAIL 125 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + + + + +DAKT LQE+ P Y V Sbjct: 126 GAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIPLPTYTVVATH 185 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 186 GAAHNQQFEVECTVPKLDVKVSGSG 210 >gi|284799722|ref|ZP_05984688.2| ribonuclease III [Neisseria subflava NJ9703] gi|284797336|gb|EFC52683.1| ribonuclease III [Neisseria subflava NJ9703] Length = 296 Score = 224 bits (571), Expect = 9e-57, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 112/219 (51%), Gaps = 6/219 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + ++KR+GY F N LL++ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HRAIQKRLGYEFRNMELLQQALTHRSYN---AKHNERFEFVGDSILNYSVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS +LV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LSEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + +R ++ ++D+KT LQE A+ P+Y++ ++ Sbjct: 128 VSFDADFSAAEKVVRHLFAERVKRADLNIGKKDSKTALQEALQARRFALPKYRIEEQAEQ 187 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 D F + ++ L S++ AEQ AA E L+ Sbjct: 188 TADAMFVISCDLGELGFICNARGSSRKVAEQKAACEALE 226 >gi|148284924|ref|YP_001249014.1| ribonuclease III [Orientia tsutsugamushi str. Boryong] gi|146740363|emb|CAM80798.1| ribonuclease III [Orientia tsutsugamushi str. Boryong] Length = 251 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 75/218 (34%), Positives = 121/218 (55%), Gaps = 2/218 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L+ IGY F + LL +ALTH SI+ + Y ++Y+RLEFLGD IL L+IS LF +F Sbjct: 23 KLDALQSEIGYNFNSIDLLIEALTHPSINQYGYTKNYQRLEFLGDVILNLVISETLFKNF 82 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ LV E+ +A++++L +I ++++ K + + +E++I Sbjct: 83 SHYNEGKLAKSRAFLVCNESICLIAQKINLHKYIIMTANEEKCGGRSNKNNIENTMEAVI 142 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLDGGI V V+ WK D K+ LQEW+ +K P Y ++ ++G Sbjct: 143 GAVYLDGGIHVIKDIVNSLWKVLIKDHELYLIADPKSALQEWSQSKNFGIPTYTLSSKTG 202 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H P F V+V++ L P G + + A++ AA +L Sbjct: 203 QSHSPLFEVMVKVGRLEPQYGKGTTIKTAQKNAAQLML 240 >gi|317121789|ref|YP_004101792.1| ribonuclease III [Thermaerobacter marianensis DSM 12885] gi|315591769|gb|ADU51065.1| ribonuclease III [Thermaerobacter marianensis DSM 12885] Length = 329 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 106/222 (47%), Gaps = 7/222 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + + G L +ALTH+S + + ERLEFLGD +L L ++ +F Sbjct: 74 LQRVAELTGTEPRRPELFLEALTHASYRAEHPDTAGADNERLEFLGDAVLNLCVTDHIFR 133 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGELS + V AET + A+ L L +R+ S+ AD E+ Sbjct: 134 TYPQRPEGELSKLRAATVRAETLAVTAQRLGLGELLRLGRGEEATGGRQRPSVLADAFEA 193 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++AA+YL G+E A F+ + R +S D KT LQE + P Y+V Sbjct: 194 VVAAVYLQEGLEGARAFILRTLGDEIRRLAESSGACDDPKTALQELSRRLGLGEPSYRVI 253 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 SGP+HDPR+TV V + G Q + SK+ AE+ AA L Sbjct: 254 DASGPEHDPRYTVEVRVGGRPLGQAVGRSKKVAEREAARIAL 295 >gi|221194650|ref|ZP_03567707.1| ribonuclease III [Atopobium rimae ATCC 49626] gi|221185554|gb|EEE17944.1| ribonuclease III [Atopobium rimae ATCC 49626] Length = 243 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 78/209 (37%), Positives = 98/209 (46%), Gaps = 3/209 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFN 61 R EK + F R L+E ALTH S SYERLEFLGD ILG +++T LF Sbjct: 5 ERIRAAEKICNHVFKRRDLIEAALTHPSAVEDKPVSASYERLEFLGDSILGAIVATDLFE 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGEL+ SLVS T S VA L + I R M S +V ES Sbjct: 65 RYPEMDEGELTRLKISLVSGHTLSLVAEALGIGPLIITGVSERGTGGRGMRSALENVYES 124 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++ ALYLD G E FV + + + K+ LQE A TPEY++ Sbjct: 125 IVGALYLDAGYEPTHEFVIRTLAPHISPALAERSVSPKSRLQEAVQANGKSTPEYELVSE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SGP H P F VV + G +G SK+ Sbjct: 185 SGPAHTPTFISVVSVDGCKVGRGQGHSKK 213 >gi|139436972|ref|ZP_01771132.1| Hypothetical protein COLAER_00105 [Collinsella aerofaciens ATCC 25986] gi|133776619|gb|EBA40439.1| Hypothetical protein COLAER_00105 [Collinsella aerofaciens ATCC 25986] Length = 241 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 75/208 (36%), Positives = 105/208 (50%), Gaps = 3/208 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 R + ++ +G+ F N+ LL ALTH S SYERLEFLGD ILG +++ LF Sbjct: 6 RLTRAQEILGHEFNNKVLLRAALTHPSAVEGQPVSASYERLEFLGDSILGAVVARSLFES 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+L+ SLVS T S+V+ EL + I + + S +V ESL Sbjct: 66 YPEFDEGKLTRLKVSLVSGATLSEVSHELGIDDIIIFGASETGTGARGLHSALENVYESL 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + ALYLD G +VA F+ + K + + + K+ LQE A P YK+ Sbjct: 126 VGALYLDAGWDVAAEFIHRTLKPHLASERAEHPANPKSFLQECVQADGHEPPAYKLVGSE 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H P FT VV I G+ +G SK+ Sbjct: 186 GPAHAPTFTAVVLIDGIRQGRGTGSSKK 213 >gi|254245911|ref|ZP_04939232.1| Ribonuclease III [Burkholderia cenocepacia PC184] gi|124870687|gb|EAY62403.1| Ribonuclease III [Burkholderia cenocepacia PC184] Length = 350 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 19 MPSSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 75 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 76 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 135 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 136 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 195 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 196 GAAHNQQFEVECTVPKLDVKVSGSG 220 >gi|189184858|ref|YP_001938643.1| ribonuclease III [Orientia tsutsugamushi str. Ikeda] gi|189181629|dbj|BAG41409.1| ribonuclease III [Orientia tsutsugamushi str. Ikeda] Length = 246 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 76/218 (34%), Positives = 122/218 (55%), Gaps = 2/218 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63 + TL+ IGY F + LL +ALTH SI+ + Y ++Y+RLEFLGD IL L+IS LF +F Sbjct: 18 KLDTLQSEIGYNFNSIDLLIEALTHPSINQYGYTKNYQRLEFLGDVILNLVISETLFKNF 77 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ LV E+ +A++++L +I ++++ K + + +E++I Sbjct: 78 SHYNEGKLAKSRAFLVCNESICLIAQKINLHKYIIMTANEEKCGGRSNKNNIENTMEAVI 137 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLDGGI V V+ WK D K+ LQEW+ +K P Y ++ ++G Sbjct: 138 GAVYLDGGIHVIKDIVNSLWKVLIKDHELYLIADPKSALQEWSQSKNFGIPTYTLSSKTG 197 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H P F V+V++ L P G + + A++ AA +L Sbjct: 198 QSHSPLFEVMVKVGRLEPQYGKGTTIKTAQKNAAQLML 235 >gi|307150264|ref|YP_003885648.1| ribonuclease III [Cyanothece sp. PCC 7822] gi|306980492|gb|ADN12373.1| ribonuclease III [Cyanothece sp. PCC 7822] Length = 228 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 95/206 (46%), Gaps = 12/206 (5%) Query: 16 AFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N+ L ALTH S + + E ERLEFLGD IL + L+ + E +L+ Sbjct: 6 TFKNQQLWLCALTHRSYINEHSGINEHNERLEFLGDAILAFVAGEFLYQRYPHLSEAQLT 65 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV ++ A +L + +R+ KD ++ +D E++I A YLD G+ Sbjct: 66 RLRAKLVDETQLARFAVQLGIGELMRLGKGAIKDGGRENPALLSDTFEAIIGAYYLDAGV 125 Query: 133 EVAGTFVDKYWK---------QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + FV ++ Q + + K DAK Q+WA A+F PEY + SGP Sbjct: 126 DAVRNFVHPLFQSVADILMVSQSEVATTKNLLDAKNRFQQWALAEFSQNPEYIIIEESGP 185 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 DH FT V++ G+ G K+ Sbjct: 186 DHAKEFTAQVKVQGIVYGVGRGRRKQ 211 >gi|107022210|ref|YP_620537.1| ribonuclease III [Burkholderia cenocepacia AU 1054] gi|116689156|ref|YP_834779.1| ribonuclease III [Burkholderia cenocepacia HI2424] gi|105892399|gb|ABF75564.1| RNAse III [Burkholderia cenocepacia AU 1054] gi|116647245|gb|ABK07886.1| RNAse III [Burkholderia cenocepacia HI2424] Length = 409 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPSSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|254184210|ref|ZP_04890800.1| ribonuclease III [Burkholderia pseudomallei 1655] gi|184214741|gb|EDU11784.1| ribonuclease III [Burkholderia pseudomallei 1655] Length = 467 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|15605018|ref|NP_219802.1| ribonuclease III [Chlamydia trachomatis D/UW-3/CX] gi|76789019|ref|YP_328105.1| ribonuclease III [Chlamydia trachomatis A/HAR-13] gi|237802720|ref|YP_002887914.1| ribonuclease III [Chlamydia trachomatis B/Jali20/OT] gi|237804642|ref|YP_002888796.1| ribonuclease III [Chlamydia trachomatis B/TZ1A828/OT] gi|255311099|ref|ZP_05353669.1| ribonuclease III [Chlamydia trachomatis 6276] gi|255317400|ref|ZP_05358646.1| ribonuclease III [Chlamydia trachomatis 6276s] gi|7531193|sp|O84299|RNC_CHLTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101618|sp|Q3KM65|RNC_CHLTA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|3328712|gb|AAC67890.1| Ribonuclease III [Chlamydia trachomatis D/UW-3/CX] gi|76167549|gb|AAX50557.1| ribonuclease III [Chlamydia trachomatis A/HAR-13] gi|231272942|emb|CAX09853.1| ribonuclease III [Chlamydia trachomatis B/TZ1A828/OT] gi|231273954|emb|CAX10746.1| ribonuclease III [Chlamydia trachomatis B/Jali20/OT] gi|296435814|gb|ADH17988.1| ribonuclease III [Chlamydia trachomatis G/9768] gi|296436739|gb|ADH18909.1| ribonuclease III [Chlamydia trachomatis G/11222] gi|296437674|gb|ADH19835.1| ribonuclease III [Chlamydia trachomatis G/11074] gi|297140173|gb|ADH96931.1| ribonuclease III [Chlamydia trachomatis G/9301] gi|297748426|gb|ADI50972.1| Ribonuclease III [Chlamydia trachomatis D-EC] gi|297749306|gb|ADI51984.1| Ribonuclease III [Chlamydia trachomatis D-LC] Length = 231 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 3/221 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLL 59 + +E ++ + F++ LL ALTH S + + +E ERLEFLGD +LGL+++ L Sbjct: 4 TVDIQAIESKLNFTFSHPRLLITALTHPSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHL 63 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F + EG LS +LV+AE C + ++L L + + + S A+++ Sbjct: 64 FLLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLL 123 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+++ A+YLDGG+ A + + + K LQ++ V P YK Sbjct: 124 EAILGAVYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALP 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 D P + V V ++G +G SK+ AE++AA + L Sbjct: 184 WKSEDGSPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224 >gi|294787661|ref|ZP_06752905.1| ribonuclease III [Simonsiella muelleri ATCC 29453] gi|294483954|gb|EFG31637.1| ribonuclease III [Simonsiella muelleri ATCC 29453] Length = 235 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 112/222 (50%), Gaps = 10/222 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L++ I + F N +L+++ALTH S S ++YERLEF+GD IL +++ +L+ F Sbjct: 12 KLQQEINFLFKNPNLIQQALTHRSYS---SQNYERLEFIGDSILNYVVAKMLYEAFPKLP 68 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG LS LV T + +AR+L + + + K SI AD +E+L AA+ Sbjct: 69 EGRLSPLRAQLVKEATLADIARQLHIGDALFLGVGELKSGGHDRASILADALEALFAAIS 128 Query: 128 LDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD + + K + Q+ L + + +DAKT LQE + P+Y++ ++G + Sbjct: 129 LDSDFATSEKIIRKIFSQKIKELDTSQSAKDAKTSLQELLQGQKLTLPKYRIDKQTGEGN 188 Query: 186 DPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGIW 226 D F V ++ L S+R AEQ A + + +W Sbjct: 189 DAIFDVSCDLGELGKIFYAQASSRRTAEQECAKQAI----VW 226 >gi|126438815|ref|YP_001059800.1| ribonuclease III [Burkholderia pseudomallei 668] gi|126218308|gb|ABN81814.1| ribonuclease III [Burkholderia pseudomallei 668] Length = 467 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|241668007|ref|ZP_04755585.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876541|ref|ZP_05249251.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842562|gb|EET20976.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 230 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 111/221 (50%), Gaps = 9/221 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS L K +GY+F N +LL +ALTH S +++YERLEFLGD ILG +I+ +L+ F Sbjct: 4 EYSRLYKILGYSFKNYTLLVRALTHRS---KTKKNYERLEFLGDSILGFVIAEVLYMEFP 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS + LV T + +A L +I + + I DV E++I Sbjct: 61 DLAEGKLSQIRSKLVKGVTLANLALNFKLDEYIILGASE--QGGHKREKILEDVFEAIIG 118 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD + ++K L + +D+K++LQE PEY + Sbjct: 119 AIYLDSDFATVKKVIVNWYKPVISTLNLDDVKVKDSKSKLQEILLQNGLSLPEYSIETID 178 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G DH+ FTV + L + S++ AEQ AA ++++ Sbjct: 179 GKDHEQEFTVKALSNDLNIKVRAKGTSRKKAEQKAAEKMIQ 219 >gi|238788224|ref|ZP_04632019.1| Ribonuclease 3 [Yersinia frederiksenii ATCC 33641] gi|238723811|gb|EEQ15456.1| Ribonuclease 3 [Yersinia frederiksenii ATCC 33641] Length = 204 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 66/189 (34%), Positives = 95/189 (50%), Gaps = 6/189 (3%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALTH S S + ERLEFLGD IL +I+ L+ F EG++S +LV T Sbjct: 3 QALTHRSASSKH---NERLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNTL 59 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 +++ARE DL +R+ K SI AD VE+LI ++LD I + +++ Sbjct: 60 AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIHTIERLILDWYR 119 Query: 145 QRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201 R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 120 SRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEPV 179 Query: 202 QGMDCSKRA 210 G S+R Sbjct: 180 IGTGSSRRK 188 >gi|238793773|ref|ZP_04637394.1| Ribonuclease 3 [Yersinia intermedia ATCC 29909] gi|238726837|gb|EEQ18370.1| Ribonuclease 3 [Yersinia intermedia ATCC 29909] Length = 204 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 65/189 (34%), Positives = 97/189 (51%), Gaps = 6/189 (3%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALTH S + + ERLEFLGD IL +I+ L++ F EG++S +LV T Sbjct: 3 QALTHRSANSKH---NERLEFLGDSILSFVIANELYHRFPRVDEGDMSRMRATLVRGNTL 59 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 +++ARE DL +R+ K SI AD VE+LI ++LD I + + +++ Sbjct: 60 AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHMIERLILDWYR 119 Query: 145 QRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201 R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 120 SRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEPV 179 Query: 202 QGMDCSKRA 210 G S+R Sbjct: 180 IGTGSSRRK 188 >gi|167903627|ref|ZP_02490832.1| ribonuclease III [Burkholderia pseudomallei NCTC 13177] Length = 467 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|76811515|ref|YP_334276.1| ribonuclease III [Burkholderia pseudomallei 1710b] gi|167739551|ref|ZP_02412325.1| ribonuclease III [Burkholderia pseudomallei 14] gi|254258167|ref|ZP_04949221.1| ribonuclease III [Burkholderia pseudomallei 1710a] gi|76580968|gb|ABA50443.1| ribonuclease III [Burkholderia pseudomallei 1710b] gi|254216856|gb|EET06240.1| ribonuclease III [Burkholderia pseudomallei 1710a] Length = 467 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|167627437|ref|YP_001677937.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189043314|sp|B0TXH8|RNC_FRAP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|167597438|gb|ABZ87436.1| Ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 230 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 111/221 (50%), Gaps = 9/221 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS L K +GY+F N +LL +ALTH S +++YERLEFLGD ILG +I+ +L+ F Sbjct: 4 EYSRLYKILGYSFKNYTLLVRALTHRS---KTKKNYERLEFLGDSILGFVIAEVLYMEFP 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS + LV T + +A L +I + + I DV E++I Sbjct: 61 DLAEGKLSQIRSKLVKGVTLANLALNFKLDEYIILGASE--QGGHKREKILEDVFEAIIG 118 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD + ++K L + +D+K++LQE PEY + Sbjct: 119 AIYLDSDFATVKKVIVNWYKPVISTLNLDDVKVKDSKSKLQEILLQNGLSLPEYSIETID 178 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G DH+ FTV + L + S++ AEQ AA ++++ Sbjct: 179 GKDHEQEFTVKALSNDLNIEVRAKGTSRKKAEQKAAEKMIQ 219 >gi|170732444|ref|YP_001764391.1| ribonuclease III [Burkholderia cenocepacia MC0-3] gi|169815686|gb|ACA90269.1| Ribonuclease III [Burkholderia cenocepacia MC0-3] Length = 409 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPSSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|332187768|ref|ZP_08389502.1| ribonuclease III [Sphingomonas sp. S17] gi|332012118|gb|EGI54189.1| ribonuclease III [Sphingomonas sp. S17] Length = 235 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 88/206 (42%), Positives = 118/206 (57%), Gaps = 3/206 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S L + G A + + +ALTH S E+YERLEFLGDR+LGL+++ L+ F + Sbjct: 20 SWLTQIFGRAPQDSAPFHRALTHGS---QAAENYERLEFLGDRVLGLIMAEWLWEQFPNE 76 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS R NSLV+ C+ VAR+L + +R+ R D S ++ DV+E+LI A Sbjct: 77 PEGQLSRRLNSLVTGPVCADVARDLGVRDHLRLGKQARDDGASDSDNVLGDVMEALIGAW 136 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y + G++ A FV K W R GK + K+ LQEWA A PEY+VT RSGP H Sbjct: 137 YREAGLDAARAFVRKAWGDRVHSQGKAPQHPKSALQEWAAAHNRKAPEYEVTDRSGPHHA 196 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAE 212 PRFTV V I A A +K+ AE Sbjct: 197 PRFTVTVRIGRTAEASASGANKQEAE 222 >gi|269978187|ref|ZP_06185137.1| ribonuclease III [Mobiluncus mulieris 28-1] gi|306818562|ref|ZP_07452285.1| ribonuclease III [Mobiluncus mulieris ATCC 35239] gi|307700841|ref|ZP_07637866.1| ribonuclease III [Mobiluncus mulieris FB024-16] gi|269933696|gb|EEZ90280.1| ribonuclease III [Mobiluncus mulieris 28-1] gi|304648735|gb|EFM46037.1| ribonuclease III [Mobiluncus mulieris ATCC 35239] gi|307613836|gb|EFN93080.1| ribonuclease III [Mobiluncus mulieris FB024-16] Length = 269 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 60/201 (29%), Positives = 100/201 (49%), Gaps = 8/201 (3%) Query: 19 NRSLLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 + LL A+TH S SH + ++ ERLEFLGD +L ++++ L+ +F EG L+ Sbjct: 35 DPDLLVLAMTHRSFSHEHGKTGSRGTNERLEFLGDAVLQIIVTEYLYRNFPDEPEGTLAQ 94 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + VS ++VAR++ L ++R+ + SI +D +E+LI A +L G+ Sbjct: 95 MRAATVSQTPLAEVARKIHLGEYLRLGVGEDRQGGRDKDSILSDTLEALIGATFLSCGLS 154 Query: 134 VAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 V V+++ ++ + + D KT LQE A Y+V +GPDH F+ Sbjct: 155 VTRVVVERHLRRFLRNAPRRAVTLDWKTTLQELLSAADLGEVTYEVVA-TGPDHQKHFSA 213 Query: 192 VVEISGLAPAQGMDCSKRAAE 212 + G +G SK+ AE Sbjct: 214 QALVEGENWGEGQGSSKKIAE 234 >gi|330815986|ref|YP_004359691.1| Ribonuclease III [Burkholderia gladioli BSR3] gi|327368379|gb|AEA59735.1| Ribonuclease III [Burkholderia gladioli BSR3] Length = 403 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPQSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 SKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|217420723|ref|ZP_03452228.1| ribonuclease III [Burkholderia pseudomallei 576] gi|237813195|ref|YP_002897646.1| ribonuclease III [Burkholderia pseudomallei MSHR346] gi|217396135|gb|EEC36152.1| ribonuclease III [Burkholderia pseudomallei 576] gi|237506043|gb|ACQ98361.1| ribonuclease III [Burkholderia pseudomallei MSHR346] Length = 467 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|238784187|ref|ZP_04628200.1| Ribonuclease 3 [Yersinia bercovieri ATCC 43970] gi|238796735|ref|ZP_04640241.1| Ribonuclease 3 [Yersinia mollaretii ATCC 43969] gi|238714896|gb|EEQ06895.1| Ribonuclease 3 [Yersinia bercovieri ATCC 43970] gi|238719466|gb|EEQ11276.1| Ribonuclease 3 [Yersinia mollaretii ATCC 43969] Length = 204 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 6/189 (3%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALTH S S + ERLEFLGD IL +I+ L+ F EG++S +LV T Sbjct: 3 QALTHRSASSKH---NERLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNTL 59 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 +++ARE DL +R+ K SI AD VE+LI ++LD I + + +++ Sbjct: 60 AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHMIERLILDWYR 119 Query: 145 QRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201 R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 120 SRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEPV 179 Query: 202 QGMDCSKRA 210 G S+R Sbjct: 180 IGTGSSRRK 188 >gi|53720035|ref|YP_109021.1| ribonuclease III [Burkholderia pseudomallei K96243] gi|167816752|ref|ZP_02448432.1| ribonuclease III [Burkholderia pseudomallei 91] gi|167895244|ref|ZP_02482646.1| ribonuclease III [Burkholderia pseudomallei 7894] gi|167919873|ref|ZP_02506964.1| ribonuclease III [Burkholderia pseudomallei BCC215] gi|52210449|emb|CAH36432.1| ribonuclease III [Burkholderia pseudomallei K96243] Length = 467 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|134277308|ref|ZP_01764023.1| ribonuclease III [Burkholderia pseudomallei 305] gi|134250958|gb|EBA51037.1| ribonuclease III [Burkholderia pseudomallei 305] Length = 467 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|227494679|ref|ZP_03924995.1| ribonuclease III [Actinomyces coleocanis DSM 15436] gi|226831861|gb|EEH64244.1| ribonuclease III [Actinomyces coleocanis DSM 15436] Length = 256 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 96/204 (47%), Gaps = 5/204 (2%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL ALTH S + E ERLEFLGD +L ++++ L+ ++ + E LS Sbjct: 32 DPELLILALTHRSFAFEVGNIEPNERLEFLGDSVLSIIVTEYLYKNYPQSSEANLSRMRG 91 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 ++VS +T SQVAR + L FI + SI D+ E++I A YL G+E Sbjct: 92 AIVSEKTLSQVARNIRLGDFILLGKGENLTGGRDRDSILCDMTEAMIGATYLSHGLEATR 151 Query: 137 TFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 V+ + + ++ + + D KT LQE+ P Y+ GPDH F V Sbjct: 152 RIVEYHLRPFLERAVELGKSSDYKTTLQEYCAEASLGEPIYEAEG-FGPDHARYFIATVT 210 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAE 218 + G G SK+ A+ AA Sbjct: 211 VGGELVGHGQASSKKGAKSEAARA 234 >gi|68536283|ref|YP_250988.1| ribonuclease III [Corynebacterium jeikeium K411] gi|90101621|sp|Q4JUY7|RNC_CORJK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|68263882|emb|CAI37370.1| ribonuclease III [Corynebacterium jeikeium K411] Length = 244 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 65/208 (31%), Positives = 99/208 (47%), Gaps = 6/208 (2%) Query: 21 SLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LL ALTH S ++ + + ERLEFLGD +LGL ++ L+ F E ++S + + Sbjct: 36 DLLRLALTHRSFANENGHLPNNERLEFLGDAVLGLAVAEQLYRQFPERAESDISKMRSGV 95 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 V+ + VAR L + +I + SI AD VES++ A+YL G EVA Sbjct: 96 VNMYALADVARRLGMGDYILLGRGEMLTGGKDKHSILADSVESMLGAIYLHHGFEVARAT 155 Query: 139 VDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 V + + ++ ++ D KT L E P Y+V GP+HD F V I Sbjct: 156 VLRLFAEKITEAPTTGLTMDWKTVLLEKLSDMKLPLPTYEVRGE-GPEHDKTFYATVTIE 214 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKREG 224 L G +K+ AE AA + +++ Sbjct: 215 DLV-THGEGHTKKVAEHAAAKQAVQKLN 241 >gi|256827009|ref|YP_003150968.1| ribonuclease III [Cryptobacterium curtum DSM 15641] gi|256583152|gb|ACU94286.1| ribonuclease III [Cryptobacterium curtum DSM 15641] Length = 279 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFN 61 + ++ +GY F++ L A+TH S + SYERLEFLGD ILG +++ F+ Sbjct: 9 EKLDRAQEVLGYRFSDEHFLLSAITHPSAVEGMPVKFSYERLEFLGDSILGAVVADAAFH 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG L+ SLV+ + SQVA EL A FI + S +V E+ Sbjct: 69 RFPDLDEGGLTRIKVSLVAGSSLSQVANELGFADFIIFGQSEAGTGRRGLHSALENVYEA 128 Query: 122 LIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++AALYLDGG+EVA +F+ + ++ + + K+ LQE G+TP YK+ Sbjct: 129 VVAALYLDGGMEVARSFIVQTLLGYMSIDMAREPENPKSALQEKLQED-GITPTYKLIET 187 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP HD F V A A+G+ +K+ AE AA L Sbjct: 188 QGPPHDRTFVAAVYAGLQALARGVGRTKKEAESKAAQTALSHL 230 >gi|289643138|ref|ZP_06475267.1| ribonuclease III [Frankia symbiont of Datisca glomerata] gi|289507030|gb|EFD28000.1| ribonuclease III [Frankia symbiont of Datisca glomerata] Length = 272 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 67/208 (32%), Positives = 99/208 (47%), Gaps = 9/208 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L +G + LLE ALTH S ++ + ERLEFLGD +L L+++ LFN Sbjct: 14 LRAALGV-PVDVDLLELALTHRSYAYEQGGLPTNERLEFLGDSVLSLVVTDALFNRHPDL 72 Query: 67 KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ + S+V+ ++VAR L + ++ + SI AD +E+LI Sbjct: 73 PEGQLAKQRASVVNMRALAEVARTLGEKGIGPYLLLGRGEETTGGRDKASILADTLEALI 132 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YL G+ A FV + + + D KT LQE + PEY+V Sbjct: 133 GAVYLSSGLGSASEFVHRLFDPLLDVAAGRGAGLDWKTSLQERTASLLLGPPEYEV-DEF 191 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDH RFT ++G G SK+ Sbjct: 192 GPDHAKRFTARAVVAGRVLGHGDGGSKK 219 >gi|330860319|emb|CBX70633.1| ribonuclease 3 [Yersinia enterocolitica W22703] Length = 204 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 66/189 (34%), Positives = 94/189 (49%), Gaps = 6/189 (3%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALTH S S + ERLEFLGD IL +I+ L+ F EG++S +LV T Sbjct: 3 QALTHRSASSKH---NERLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNTL 59 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 +++ARE DL +R+ K SI AD VE+LI ++LD I + ++ Sbjct: 60 AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHTIERLILAWYH 119 Query: 145 QRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201 R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 120 SRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEPV 179 Query: 202 QGMDCSKRA 210 G S+R Sbjct: 180 IGTGSSRRK 188 >gi|172040468|ref|YP_001800182.1| ribonuclease III [Corynebacterium urealyticum DSM 7109] gi|171851772|emb|CAQ04748.1| ribonuclease III [Corynebacterium urealyticum DSM 7109] Length = 245 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 6/226 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 S ++ L + G ++ +L ALTH S +H + ERLEFLGD +LGL ++ L Sbjct: 18 SKHDHAPLLEAWGIELSD-EMLRLALTHRSFAHENDNVPNNERLEFLGDAVLGLSVAEQL 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F E ++S +V+ + +AR L L +I + K SI AD V Sbjct: 77 YTQFPQRSESDISKMRAGVVNMYALAGLARNLGLGEYILLGRGEMKTDGQDKDSILADTV 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177 E+++ A+YL+ G VA V + +K K+ D KT +QE PEY+V Sbjct: 137 EAILGAIYLEHGFAVAKATVLRLFKSMIDKAPTVGLTMDWKTTVQERLREHDLPMPEYEV 196 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T SGP+HD F +++ G +G +K+ AE AA +++ Sbjct: 197 TS-SGPEHDKAFFATLKLDGKERTRGQGRTKKEAEHQAARAMVEEL 241 >gi|126454458|ref|YP_001067087.1| ribonuclease III [Burkholderia pseudomallei 1106a] gi|167825159|ref|ZP_02456630.1| ribonuclease III [Burkholderia pseudomallei 9] gi|167846656|ref|ZP_02472164.1| ribonuclease III [Burkholderia pseudomallei B7210] gi|167911876|ref|ZP_02498967.1| ribonuclease III [Burkholderia pseudomallei 112] gi|242317956|ref|ZP_04816972.1| ribonuclease III [Burkholderia pseudomallei 1106b] gi|254191245|ref|ZP_04897749.1| ribonuclease III [Burkholderia pseudomallei Pasteur 52237] gi|254195715|ref|ZP_04902141.1| ribonuclease III [Burkholderia pseudomallei S13] gi|254296871|ref|ZP_04964324.1| ribonuclease III [Burkholderia pseudomallei 406e] gi|126228100|gb|ABN91640.1| ribonuclease III [Burkholderia pseudomallei 1106a] gi|157808000|gb|EDO85170.1| ribonuclease III [Burkholderia pseudomallei 406e] gi|157938917|gb|EDO94587.1| ribonuclease III [Burkholderia pseudomallei Pasteur 52237] gi|169652460|gb|EDS85153.1| ribonuclease III [Burkholderia pseudomallei S13] gi|242141195|gb|EES27597.1| ribonuclease III [Burkholderia pseudomallei 1106b] Length = 467 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|255994063|ref|ZP_05427198.1| ribonuclease III [Eubacterium saphenum ATCC 49989] gi|255993731|gb|EEU03820.1| ribonuclease III [Eubacterium saphenum ATCC 49989] Length = 252 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 9/228 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLISTLL 59 LE +I Y F++R+LL ALTH S+ + + + +RLE+LGD IL L+I LL Sbjct: 3 NLDALETKINYKFSDRNLLITALTHVSMLGKVHNMDRKSTNQRLEYLGDAILYLVIGELL 62 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F EG L+ +++V+ + S++A++LDL I + S K + +I AD Sbjct: 63 FIKRPDYDEGNLTKARSNIVNNHSLSEMAKKLDLGRHIEMDSSTEKHMGRRNEAILADTF 122 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVT--PEY 175 E+L+ A++LD G E F++K + +R ++ G+ + D KT LQE HA +Y Sbjct: 123 EALMGAIFLDAGYEKTHEFINKLFIKRIEEAATGEAKADYKTRLQECVHACGITNYYIKY 182 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H F + ++ ++G+ SK+ A+Q AA + Sbjct: 183 HTISEKGDQHCKTFRIGAYLNNTKLSEGVGKSKKEAQQNAARLFFENM 230 >gi|256851300|ref|ZP_05556689.1| ribonuclease III [Lactobacillus jensenii 27-2-CHN] gi|260660724|ref|ZP_05861639.1| ribonuclease III [Lactobacillus jensenii 115-3-CHN] gi|282933255|ref|ZP_06338642.1| ribonuclease III [Lactobacillus jensenii 208-1] gi|297206169|ref|ZP_06923564.1| ribonuclease III [Lactobacillus jensenii JV-V16] gi|256616362|gb|EEU21550.1| ribonuclease III [Lactobacillus jensenii 27-2-CHN] gi|260548446|gb|EEX24421.1| ribonuclease III [Lactobacillus jensenii 115-3-CHN] gi|281302759|gb|EFA94974.1| ribonuclease III [Lactobacillus jensenii 208-1] gi|297149295|gb|EFH29593.1| ribonuclease III [Lactobacillus jensenii JV-V16] Length = 230 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 116/229 (50%), Gaps = 10/229 (4%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ L + G F N +LLE+A THSS + + + +YE+LEFLGD +L L + Sbjct: 1 MVSTKFKNYLFEEYGIKFKNETLLEEAFTHSSYVNEHPKESAGNYEKLEFLGDAVLELAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ HF S EG+L+ +++V E S A E + I + K ++ Sbjct: 61 SDYLYRHFPSLNEGQLTRLRSNIVRTEGFSGFAIECGFPAEINLGRGEEKTGARERKTLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTP 173 DV E+ AL+LD G++ F+ K + SG+F RD KT+LQE + Sbjct: 121 EDVFEAFNGALFLDQGMDAVQKFL-KLTVYPLIDSGEFTDSRDYKTDLQELLQVNGAIKI 179 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 EY+V + + F V + + G ++G +K+AAEQVAA L + Sbjct: 180 EYQVLEETKLPSN--FKVALFVEGKKISEGSGHNKKAAEQVAAKLALIK 226 >gi|53725351|ref|YP_102339.1| ribonuclease III [Burkholderia mallei ATCC 23344] gi|121599423|ref|YP_993770.1| ribonuclease III [Burkholderia mallei SAVP1] gi|124385463|ref|YP_001028764.1| ribonuclease III [Burkholderia mallei NCTC 10229] gi|126450086|ref|YP_001081328.1| ribonuclease III [Burkholderia mallei NCTC 10247] gi|167000779|ref|ZP_02266586.1| ribonuclease III [Burkholderia mallei PRL-20] gi|238562760|ref|ZP_00439921.2| ribonuclease III [Burkholderia mallei GB8 horse 4] gi|254178423|ref|ZP_04885078.1| ribonuclease III [Burkholderia mallei ATCC 10399] gi|254199232|ref|ZP_04905598.1| ribonuclease III [Burkholderia mallei FMH] gi|254205539|ref|ZP_04911891.1| ribonuclease III [Burkholderia mallei JHU] gi|254357706|ref|ZP_04973979.1| ribonuclease III [Burkholderia mallei 2002721280] gi|52428774|gb|AAU49367.1| ribonuclease III/hypothetical protein, fusion [Burkholderia mallei ATCC 23344] gi|121228233|gb|ABM50751.1| ribonuclease III [Burkholderia mallei SAVP1] gi|124293483|gb|ABN02752.1| ribonuclease III/hypothetical protein [Burkholderia mallei NCTC 10229] gi|126242956|gb|ABO06049.1| ribonuclease III [Burkholderia mallei NCTC 10247] gi|147748828|gb|EDK55902.1| ribonuclease III [Burkholderia mallei FMH] gi|147752982|gb|EDK60047.1| ribonuclease III [Burkholderia mallei JHU] gi|148026833|gb|EDK84854.1| ribonuclease III [Burkholderia mallei 2002721280] gi|160699462|gb|EDP89432.1| ribonuclease III [Burkholderia mallei ATCC 10399] gi|238522001|gb|EEP85448.1| ribonuclease III [Burkholderia mallei GB8 horse 4] gi|243063329|gb|EES45515.1| ribonuclease III [Burkholderia mallei PRL-20] Length = 467 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|238854774|ref|ZP_04645104.1| ribonuclease III [Lactobacillus jensenii 269-3] gi|260664006|ref|ZP_05864859.1| ribonuclease III [Lactobacillus jensenii SJ-7A-US] gi|282933852|ref|ZP_06339200.1| ribonuclease III [Lactobacillus jensenii 208-1] gi|238832564|gb|EEQ24871.1| ribonuclease III [Lactobacillus jensenii 269-3] gi|260561892|gb|EEX27861.1| ribonuclease III [Lactobacillus jensenii SJ-7A-US] gi|281301941|gb|EFA94195.1| ribonuclease III [Lactobacillus jensenii 208-1] Length = 230 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 116/229 (50%), Gaps = 10/229 (4%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ L + G F N +LLE+A THSS + + + +YE+LEFLGD +L L + Sbjct: 1 MVSTKFKNYLFEEYGIKFKNETLLEEAFTHSSYVNEHPKESVGNYEKLEFLGDAVLELAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ HF S EG+L+ +++V E S A E + I + K ++ Sbjct: 61 SDYLYRHFPSLNEGQLTRLRSNIVRTEGFSGFAIECGFPAEINLGHGEEKTGARERKTLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTP 173 DV E+ AL+LD G++ F+ K + SG+F RD KT+LQE + Sbjct: 121 EDVFEAFNGALFLDQGMDAVQKFL-KLTVYPLIDSGEFTDSRDYKTDLQELLQVNGAIKI 179 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 EY+V S + F V + + G ++G +K+AAEQVAA L + Sbjct: 180 EYQVLEESKLPSN--FKVALLVEGKKISEGSGHNKKAAEQVAAKLALIK 226 >gi|293402241|ref|ZP_06646379.1| ribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304348|gb|EFE45599.1| ribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 227 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 10/229 (4%) Query: 1 MSALRYSTLE-KRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIS 56 M+ + + LE KRI Y ++ L+ +AL HSS + ++ ERLEF+GD +L L + Sbjct: 1 MNTI-FDWLESKRIPYT--DKELIRQALVHSSYVNEHKTFAHDNERLEFMGDAVLQLWST 57 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 T LF EG+++ LV E ++ R+L L ++ + K SI A Sbjct: 58 TKLFKLTPELSEGQMTTLRAQLVCEEALAEYNRKLGLGRYLLLGVGEEKTGGRERDSILA 117 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+++ A+YLD G++ +++ A+ K + D KT+LQE+ + T Sbjct: 118 DMFEAVLGAIYLDSGMDSINVILEEVLTP-AITQPKSEKVIDYKTKLQEYIQSDSRKTVH 176 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+ SGP + P F V V + + +G SK+ AEQ+AA + ++ Sbjct: 177 YETIHVSGPSNKPEFEVAVMLDDITLGRGKGFSKKRAEQMAAKDAFEKM 225 >gi|197294673|ref|YP_001799214.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma australiense] gi|171854000|emb|CAM11965.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma australiense] Length = 222 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 106/223 (47%), Gaps = 7/223 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLF 60 + K++ N +L KALTHSS S+ QE+ ERLEFLGD I+GLL++ L+ Sbjct: 1 MNTEHFLKKLNIVPKNIALYRKALTHSSYSNEKEFLQENNERLEFLGDAIIGLLMADYLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG ++ + V ++ + A+ ++L +++ + K+ SI AD E Sbjct: 61 QKNKE-NEGVMTKKRAQAVCEKSLTIYAKSINLQNYLFLGKGE-KNKDFNTKSIIADAFE 118 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +L A+YLD G A + K+ D KT+LQE ++ + +YK+ Sbjct: 119 ALFGAIYLDLGYNSAKKVFQRLVIPHLPKAIDII-DFKTQLQEIVQSEKKI-IQYKIVSE 176 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +F V + G +K+ AEQ AA E L + Sbjct: 177 EGPAHSKKFIAEVYLDKKILGSGEGTTKKEAEQKAAQEALSKL 219 >gi|150399590|ref|YP_001323357.1| ribonuclease III [Methanococcus vannielii SB] gi|150012293|gb|ABR54745.1| Ribonuclease III [Methanococcus vannielii SB] Length = 227 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 106/224 (47%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + L + F N ++ ++A HSS + + E ERLE+LGD +L L++S LF Sbjct: 3 NFEKLLLELDIKFNNLNIFKQAFIHSSYVNEHDNENLEDNERLEYLGDAVLELVVSEYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EGE+S + V + A++L+ +I + +I +DV E Sbjct: 63 EN-KLLNEGEMSKLRSKYVCEYSLFLYAKKLNFGDYILLGKGEINSNGFNRPTILSDVFE 121 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + IAA+YLD G+ F +K+ + S K D KT+LQE ++ T Y + Sbjct: 122 AFIAAIYLDLGLCSVKKFFNKFIVPIIEENSKKLFIDYKTKLQEMIQSENK-TVRYILLE 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G HD F V V+I ++G+ SK+ AE+ AA L + Sbjct: 181 ELGEPHDKEFIVAVKIGRKIISKGVGKSKKDAERQAAKIALLKL 224 >gi|148658678|ref|YP_001278883.1| ribonuclease III [Roseiflexus sp. RS-1] gi|254807897|sp|A5V230|RNC_ROSS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|148570788|gb|ABQ92933.1| RNAse III [Roseiflexus sp. RS-1] Length = 237 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 73/212 (34%), Positives = 106/212 (50%), Gaps = 8/212 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTL 58 L R+G F+++ LLE+ALTHSS + + E S ERLEFLGD I+ L + L Sbjct: 4 SVDELSARLGVTFSDQRLLEQALTHSSFLNEHVEERMHLDSNERLEFLGDAIINFLAARL 63 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 +F F A EGEL+ +L+ ET + A+ +L +++ ++ ++ AD Sbjct: 64 VFERFPDAGEGELTAWRTALIRTETLAGFAQRYNLGAYVLLARGEESSGARQRQALLADT 123 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E++IAAL+LD G+ TF+ ++ L D K+ LQ A+ VTP Y Sbjct: 124 FEAVIAALFLDQGLNAVRTFLLPLFEAELASLPDRTLPVDYKSRLQARIQAERRVTPRYH 183 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 RSGP+H P FTV V G SK Sbjct: 184 EIDRSGPEHRPEFTVEVRAGEERLGTGKGPSK 215 >gi|325108661|ref|YP_004269729.1| RNAse III [Planctomyces brasiliensis DSM 5305] gi|324968929|gb|ADY59707.1| RNAse III [Planctomyces brasiliensis DSM 5305] Length = 335 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 71/218 (32%), Positives = 117/218 (53%), Gaps = 5/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + E+ +GY F +++ L K+LTH+SI+ + +S ER+EFLGD +LG ++ LF F Sbjct: 15 VAECEQALGYQFQDKNWLLKSLTHASIAQTRLQSNERMEFLGDAVLGAVVCDRLFALFPE 74 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT-SIQADVVESLIA 124 +EG+++ + +VS C+Q+A L L F+++ L + + S+ A V ES+IA Sbjct: 75 DEEGQMTQMKSEVVSRTACAQLALALGLDRFVQMGKGLHQS--REIPLSVLAGVFESVIA 132 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLDGG + A F+ + + + R++K++LQ+ TP Y++ SG Sbjct: 133 AIYLDGGYKAAFDFISGKLEDLIQHAAETAHIRNSKSQLQQLTQRTRSQTPTYELLQESG 192 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 PDH F V + +K+ AEQ AA L Sbjct: 193 PDHSKCFLVQAIVGPDTYPPAWGSNKKEAEQKAALNAL 230 >gi|296158234|ref|ZP_06841066.1| ribonuclease III [Burkholderia sp. Ch1-1] gi|295891570|gb|EFG71356.1| ribonuclease III [Burkholderia sp. Ch1-1] Length = 416 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A T + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|260578984|ref|ZP_05846886.1| ribonuclease III [Corynebacterium jeikeium ATCC 43734] gi|258602849|gb|EEW16124.1| ribonuclease III [Corynebacterium jeikeium ATCC 43734] Length = 244 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 6/208 (2%) Query: 21 SLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LL ALTH S ++ + + ERLEFLGD +LGL ++ L+ F E ++S + + Sbjct: 36 DLLRLALTHRSFANENGHLPNNERLEFLGDAVLGLAVAEQLYRQFPERAESDISKMRSGV 95 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 V+ + VAR L + +I + SI AD VES++ A+YL G +VA Sbjct: 96 VNMYALADVARHLGMGDYILLGRGEMLTGGKDKHSILADSVESMLGAIYLHHGFDVARAT 155 Query: 139 VDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 V + + ++ ++ D KT L E P Y+V GP+HD F V I Sbjct: 156 VLRLFAEKITEAPTTGLTMDWKTVLLEKLSDMKLPLPTYEVRGE-GPEHDKTFYATVTIE 214 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKREG 224 L G +K+ AE AA + +++ Sbjct: 215 DLV-THGEGHTKKVAEHAAAKQAVQKLN 241 >gi|145219011|ref|YP_001129720.1| RNAse III [Prosthecochloris vibrioformis DSM 265] gi|145205175|gb|ABP36218.1| RNAse III [Chlorobium phaeovibrioides DSM 265] Length = 259 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 104/226 (46%), Gaps = 7/226 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLIS 56 + + + +G + ALTH S H S +RLEFLGD ILGL+I+ Sbjct: 27 TPESIEFVSRLLGRKPGDMRFYTTALTHRSAVHDPSTPLNTHSNQRLEFLGDAILGLVIT 86 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EGELS +V+ ++ + AR + + + + S A Sbjct: 87 DYLFRELPDSPEGELSNTRAKIVNRKSLAGFARSIKIGDHLILGESADHAKIRVSESTLA 146 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPE 174 D +E+ I A++LD GI A +F++++ + R + K+ L E A P Sbjct: 147 DALEAFIGAIWLDRGISAATSFINEHVIEHRRFNTLITAENNHKSRLIEHTQALHLPPPR 206 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y V G +H+ RFTV V +G +G+ K+ AEQ AAAE + Sbjct: 207 YSVISEEGAEHEKRFTVEVSCNGKVLGRGIAARKKDAEQHAAAEAM 252 >gi|15835187|ref|NP_296946.1| ribonuclease III [Chlamydia muridarum Nigg] gi|270285359|ref|ZP_06194753.1| ribonuclease III [Chlamydia muridarum Nigg] gi|270289375|ref|ZP_06195677.1| ribonuclease III [Chlamydia muridarum Weiss] gi|301336756|ref|ZP_07224958.1| ribonuclease III [Chlamydia muridarum MopnTet14] gi|13878715|sp|Q9PK97|RNC_CHLMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|7190609|gb|AAF39406.1| ribonuclease III [Chlamydia muridarum Nigg] Length = 232 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 3/221 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLL 59 + +E ++ + F+ LL ALTH S + + E ERLEFLGD +LGL+++ L Sbjct: 4 TVNIQAVESKLKFTFSQPRLLVTALTHPSYRNEFPSDGEDSERLEFLGDAVLGLVVTEHL 63 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F S EG LS ++LV+AE C ++L L + + + S A++ Sbjct: 64 FLLFPSLNEGLLSTTRSALVNAEACFNYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLF 123 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+++ A+YLDGG+ A + + + K LQ++ V P Y Sbjct: 124 EAILGAVYLDGGLAPARQIIVPLLPNKEAILPLMLVNPKNRLQQFTQQTLKVLPTYIALP 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 S D P + V V ++ +G SK+ AE++AA + L Sbjct: 184 WSSEDGTPGYHVQVFVNEKLWGEGFAGSKKEAEKLAAKQAL 224 >gi|329942692|ref|ZP_08291471.1| ribonuclease III [Chlamydophila psittaci Cal10] gi|332287287|ref|YP_004422188.1| ribonuclease III [Chlamydophila psittaci 6BC] gi|313847871|emb|CBY16866.1| ribonuclease III [Chlamydophila psittaci RD1] gi|325506653|gb|ADZ18291.1| ribonuclease III [Chlamydophila psittaci 6BC] gi|328814952|gb|EGF84941.1| ribonuclease III [Chlamydophila psittaci Cal10] gi|328914533|gb|AEB55366.1| ribonuclease III [Chlamydophila psittaci 6BC] Length = 237 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 4/224 (1%) Query: 1 MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIS 56 M+ + +E ++ + F LL ALTH S + E ERLEFLGD +L L+++ Sbjct: 1 MNNLINIKEVEAKLNFTFTQPKLLVTALTHPSYRNETATITEDSERLEFLGDAVLCLIVT 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F S EG LS +L++A +C Q L L ++ + R TS A Sbjct: 61 EHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLIGKGERIQNERGRTSAYA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 ++ E+++ A+YLDGG+ A + + K LQ+ P Y+ Sbjct: 121 NLFEAILGAVYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKHLRTLPVYQ 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P + + V ++ +G SK+ AE++AA + L Sbjct: 181 CESWTSPQGASGYHIRVIVNNEVWGEGFALSKKEAEKLAAQQAL 224 >gi|294504509|ref|YP_003568571.1| ribonuclease III [Yersinia pestis Z176003] gi|169749969|gb|ACA67487.1| Ribonuclease III [Yersinia pseudotuberculosis YPIII] gi|186699329|gb|ACC89958.1| ribonuclease III [Yersinia pseudotuberculosis PB1/+] gi|262362499|gb|ACY59220.1| ribonuclease III [Yersinia pestis D106004] gi|262366496|gb|ACY63053.1| ribonuclease III [Yersinia pestis D182038] gi|294354968|gb|ADE65309.1| ribonuclease III [Yersinia pestis Z176003] Length = 204 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 66/189 (34%), Positives = 95/189 (50%), Gaps = 6/189 (3%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALTH S S + ERLEFLGD IL +I+ L+ F EG++S +LV T Sbjct: 3 QALTHRSASSKH---NERLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNTL 59 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 +++ARE DL +R+ K SI AD VE+LI ++LD I + +++ Sbjct: 60 AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIHTIERLILEWYH 119 Query: 145 QRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201 R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 120 SRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEPV 179 Query: 202 QGMDCSKRA 210 G S+R Sbjct: 180 IGTGSSRRK 188 >gi|296270740|ref|YP_003653372.1| ribonuclease III [Thermobispora bispora DSM 43833] gi|296093527|gb|ADG89479.1| ribonuclease III [Thermobispora bispora DSM 43833] Length = 267 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 5/194 (2%) Query: 20 RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 +LE+ALTH S ++ + ERLEFLGD +LGL+++ L+ + EG+L+ + Sbjct: 28 PDILEQALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRNHPDMPEGQLAKLRAA 87 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 +V+ + VAR LDL ++R+ +SI AD +E+LI +Y+D G++ A Sbjct: 88 VVNMRALADVARSLDLGKYLRLGRGEEGTGGRDKSSILADTLEALIGTVYVDKGLDEAFR 147 Query: 138 FVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 V + + +S D KT LQE A+ PEY V SGPDH F V + Sbjct: 148 VVHQLFDPLIERSASLGAGLDWKTSLQELTAAESLGVPEYHV-DESGPDHAKSFVATVRV 206 Query: 196 SGLAPAQGMDCSKR 209 G +G SK+ Sbjct: 207 GGKEYGKGTGRSKK 220 >gi|209517222|ref|ZP_03266067.1| Ribonuclease III [Burkholderia sp. H160] gi|209502358|gb|EEA02369.1| Ribonuclease III [Burkholderia sp. H160] Length = 423 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + + + + +DAKT LQE+ P Y V Sbjct: 118 GAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|300858757|ref|YP_003783740.1| ribonuclease III [Corynebacterium pseudotuberculosis FRC41] gi|300686211|gb|ADK29133.1| ribonuclease III [Corynebacterium pseudotuberculosis FRC41] gi|302206463|gb|ADL10805.1| Ribonuclease III [Corynebacterium pseudotuberculosis C231] gi|302331018|gb|ADL21212.1| Ribonuclease III [Corynebacterium pseudotuberculosis 1002] gi|308276705|gb|ADO26604.1| Ribonuclease III [Corynebacterium pseudotuberculosis I19] Length = 249 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 111/220 (50%), Gaps = 6/220 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + Y++L +G R LL ALTH S ++ + ERLEFLGD +LGL +++ L+ Sbjct: 21 INYASLIDSLGIDIP-RDLLMLALTHRSFANENGSLPNNERLEFLGDAVLGLSVASKLYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + S E ++S S+VS + +ARE+ L SFI + SI AD E+ Sbjct: 80 QYPSRAESDISKMRASIVSRYGLADIAREIKLGSFILLGKGELMTNGRDKESILADTTEA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A+YL G EVA V + ++++ + +D KT LQE A + P Y Sbjct: 140 LLGAIYLAHGFEVARNTVLRLFQRKIDTASAVGMHQDWKTTLQERAAERKLPIPVY-TAS 198 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +GP+H FT VV + +G +K+ AEQ AA + Sbjct: 199 STGPEHSQIFTAVVTVGTTVLGEGTGPNKKLAEQAAAHKA 238 >gi|182414805|ref|YP_001819871.1| ribonuclease III [Opitutus terrae PB90-1] gi|177842019|gb|ACB76271.1| Ribonuclease III [Opitutus terrae PB90-1] Length = 250 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 104/226 (46%), Gaps = 6/226 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTL 58 S + L+ R+ Y F + +LLE+A+TH+S ES +RLEFLGD +L L+++ Sbjct: 20 SPSPLAALQTRLIYTFRDPALLERAVTHTSYLPENPDIAESNQRLEFLGDAVLQLILTEA 79 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF F +EG LS R +L ++AREL L + + S +S D Sbjct: 80 LFELFPGDREGPLSRRRAALTKGAFLVELARELQLDRCLLLGSSEEASGGRTRSSALEDA 139 Query: 119 VESLIAALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFG-VTPEY 175 E+L+ ALYLD + + V + L + K LQE ++G Y Sbjct: 140 FEALVGALYLDSDLALTRRIVLGLYGDLPSRLSGVVNEENPKGRLQELIQPEYGNQALRY 199 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +VT G DH + V V + G SK+ AE+ AA L+ Sbjct: 200 EVTGIEGEDHARAYEVAVFLHDRVLGSGRGPSKKLAEEAAARVALE 245 >gi|319941434|ref|ZP_08015762.1| ribonuclease III [Sutterella wadsworthensis 3_1_45B] gi|319805054|gb|EFW01884.1| ribonuclease III [Sutterella wadsworthensis 3_1_45B] Length = 226 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 6/209 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 L LE+RIGY F ++ LL +A+TH S + + ERLEFLGD +L +I LF Sbjct: 2 LSLEALEERIGYVFQDKKLLRRAVTHRSFAQEH---NERLEFLGDSVLNCVIGYALFLRD 58 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EGELS +LV +T ++A ++D++SF+ + K + SI AD +E++ Sbjct: 59 KHFNEGELSRVRANLVCEKTLHEIALKIDVSSFLYMGEGEVKTGGAHRASILADAMEAIF 118 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++ + G + A + K + L + +D KT LQE PEY + + Sbjct: 119 GAVFREAGFDTAQRVILKLYDPILTGLTPEQMSKDPKTRLQELLQGDHLPRPEYAIVAAT 178 Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKR 209 G H+ RF I +G S+R Sbjct: 179 GAAHERRFECECRIERLKIVTRGTATSRR 207 >gi|229491421|ref|ZP_04385245.1| ribonuclease III [Rhodococcus erythropolis SK121] gi|229321706|gb|EEN87503.1| ribonuclease III [Rhodococcus erythropolis SK121] Length = 257 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 105/224 (46%), Gaps = 9/224 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 + L +G LL ALTH S ++ + ERLEFLGD +LG+ ++ L+ Sbjct: 15 NHDKLLAAVGVDIE-PGLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTENLYLS 73 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVAR---ELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 EG+L+ S+V+ ++VAR E L + + + SI AD + Sbjct: 74 HPDKSEGDLAKIRASVVNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADGM 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 ES++ A++L GIE A V + ++ D KT LQE P Y++ Sbjct: 134 ESILGAIHLQHGIETARRVVLDLFDDLLTRAPLLGAGLDWKTSLQELTAEHGAGVPVYEI 193 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GPDHD FT V ISG G+ SK+ AEQ AA+ K Sbjct: 194 TA-TGPDHDKEFTATVLISGKPLGVGVGRSKKEAEQKAASSAWK 236 >gi|238750386|ref|ZP_04611887.1| Ribonuclease 3 [Yersinia rohdei ATCC 43380] gi|238711317|gb|EEQ03534.1| Ribonuclease 3 [Yersinia rohdei ATCC 43380] Length = 204 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 66/189 (34%), Positives = 95/189 (50%), Gaps = 6/189 (3%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALTH S S + ERLEFLGD IL +I+ L+ F EG++S +LV T Sbjct: 3 QALTHRSASSKH---NERLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNTL 59 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 +++ARE DL +R+ K SI AD VE+LI ++LD I + +++ Sbjct: 60 AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHTIERLILDWYR 119 Query: 145 QRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201 R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 120 SRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEPV 179 Query: 202 QGMDCSKRA 210 G S+R Sbjct: 180 VGAGSSRRK 188 >gi|254252845|ref|ZP_04946163.1| Ribonuclease III [Burkholderia dolosa AUO158] gi|124895454|gb|EAY69334.1| Ribonuclease III [Burkholderia dolosa AUO158] Length = 377 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L++A +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNIADGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATL 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|313901966|ref|ZP_07835382.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965] gi|313467755|gb|EFR63253.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965] Length = 284 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 108/222 (48%), Gaps = 7/222 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + G A A +ALTH+S + + ERLEFLGD +L L ++ +F Sbjct: 43 VEAVAALTGVAPARPEPFLEALTHASYRSEHPDTAGPDNERLEFLGDAVLNLCVTDYIFR 102 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGELS ++V AET + A+ L L +R+ S+ AD E+ Sbjct: 103 TYPQRPEGELSKLRAAVVRAETLAATAQRLGLGELLRLGRGEEATGGRQRPSVLADAYEA 162 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++AA+YL G+E A F+ + R +S D KT LQE + P Y+V Sbjct: 163 MVAAVYLQEGLEGARAFILRTLGDDIRRLAESSGACDDPKTALQELSRRLGLGEPTYRVV 222 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +GP+HDPR+TV V + G AQ + SK+ AE+ AA L Sbjct: 223 GAAGPEHDPRYTVEVRVGGRPLAQAVGRSKKVAEREAARMAL 264 >gi|145224771|ref|YP_001135449.1| ribonuclease III [Mycobacterium gilvum PYR-GCK] gi|315445101|ref|YP_004077980.1| RNAse III [Mycobacterium sp. Spyr1] gi|145217257|gb|ABP46661.1| RNAse III [Mycobacterium gilvum PYR-GCK] gi|315263404|gb|ADU00146.1| RNAse III [Mycobacterium sp. Spyr1] Length = 234 Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 68/210 (32%), Positives = 101/210 (48%), Gaps = 8/210 (3%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LL ALTH S S+ + ERLEFLGD +LGL I+ L++ EG+L+ S+ Sbjct: 19 ELLTIALTHRSYSYENGGVPTNERLEFLGDSVLGLTITEELYHRHPDRSEGDLAKLRASI 78 Query: 79 VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 V+ + + V R L L +++ + + +SI AD VESL+ A+YL+ G A Sbjct: 79 VNTQALADVGRNLSEHGLGAYLLLGKGEENSGGADKSSILADGVESLLGAIYLEHGAVAA 138 Query: 136 GTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + + + + D K+ LQE + P Y VT +GPDHD FT VV Sbjct: 139 REVILRLFSDLLDTAPTLGAGLDWKSSLQELTASLALGAPSYHVTS-TGPDHDKEFTAVV 197 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 I+ G+ +K+ AE AA+ Sbjct: 198 IIAEREHGTGVGRTKKEAELKAASAAWNAL 227 >gi|169630337|ref|YP_001703986.1| ribonuclease III [Mycobacterium abscessus ATCC 19977] gi|169242304|emb|CAM63332.1| Ribonuclease III Rnc [Mycobacterium abscessus] Length = 258 Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 9/210 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 R+ L IG + LL ALTH S ++ + ERLEFLGD +LGL I+ L++ Sbjct: 8 RHDDLRAAIGVQLGD-ELLTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITETLYHS 66 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVV 119 EG+L+ S+V+ + + VAR L L + + + +SI AD + Sbjct: 67 HPDRSEGDLAKLRASIVNTQALAGVARGLTGDGLGAHLLLGKGEENTGGRDKSSILADGM 126 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 ES++ A+YL+ G+E A V + + + K D KT LQE K P Y V Sbjct: 127 ESILGAVYLEHGLETARAVVLTLFGELLETAPKLGAGLDWKTSLQELTAEKGWGAPSYAV 186 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 T +GPDHD FT V ++ A G+ S Sbjct: 187 TS-TGPDHDKEFTATVMVNDTAHGVGVGRS 215 >gi|89898471|ref|YP_515581.1| ribonuclease III [Chlamydophila felis Fe/C-56] gi|123483118|sp|Q253V2|RNC_CHLFF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|89331843|dbj|BAE81436.1| ribonuclease III [Chlamydophila felis Fe/C-56] Length = 237 Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 4/224 (1%) Query: 1 MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIS 56 M+ + +E ++ + F LL ALTH S + E ERLEFLGD +L L+++ Sbjct: 1 MNNLINIKEVEAKLKFTFTQPQLLVTALTHPSYRNETVTITEDSERLEFLGDAVLCLIVT 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F S EG LS +L++A +C Q L L ++ + R TS A Sbjct: 61 EHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLIGKGERIQNERGRTSAYA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 ++ E+++ A+YLDGG+ A + + K LQ+ + P Y+ Sbjct: 121 NLFEAILGAVYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKQLRTLPVYQ 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 T P P + + V ++ +G SK+ AE++AA E L Sbjct: 181 STPWISPQGAPGYHIRVIVNDEIWGEGFALSKKEAEKLAAQEAL 224 >gi|154509007|ref|ZP_02044649.1| hypothetical protein ACTODO_01524 [Actinomyces odontolyticus ATCC 17982] gi|153798641|gb|EDN81061.1| hypothetical protein ACTODO_01524 [Actinomyces odontolyticus ATCC 17982] Length = 240 Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 61/211 (28%), Positives = 94/211 (44%), Gaps = 7/211 (3%) Query: 19 NRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL+ AL H S ++ + ERLEFLGD +L ++I+ L+ + E +LS Sbjct: 27 DAPLLQLALVHRSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRA 86 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + VS + + AR + L F+ + SI +D E+LI A YL G+E A Sbjct: 87 ATVSQQPLAAAARRIGLGDFVFLGKGESMHGGRDKDSILSDTFEALIGATYLTSGLEEAR 146 Query: 137 TFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + + + +D KT L E++ A Y+V GPDH FT Sbjct: 147 RVILERLSFLLVDAPSRGQHQDWKTILIEYSQAHGLGEVSYEVEGE-GPDHQRVFTARAF 205 Query: 195 ISGL--APAQGMDCSKRAAEQVAAAEVLKRE 223 +S G SK+ AE AA + + R Sbjct: 206 VSERPDPIGSGQASSKKHAENAAAQDAMSRL 236 >gi|300814491|ref|ZP_07094752.1| ribonuclease III [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511409|gb|EFK38648.1| ribonuclease III [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 230 Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 121/226 (53%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 ++ TLEK + Y F N +LL+KALTHSS + +S ERLEFLGD +LGL++ Sbjct: 2 SVDKETLEKNLNYFFKNHALLDKALTHSSYVNENNLKSFDSNERLEFLGDAVLGLVMGEY 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 + ++ EGELS ++ V+ + VA + L I K+ F SI AD Sbjct: 62 YYKKYELYNEGELSKLRSASVNEHALAVVANHIKLGELIHFGKGEIKNGGKFRESILADA 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+LI A++LD ++A + ++ + + RD K++LQE+ T +Y +T Sbjct: 122 FEALIGAIFLDSSFKIARKVILALFEDIFDEIMLYDRDYKSKLQEFVQKDS-CTIKYVLT 180 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPD+D F+ V ISG +GM +K+ +EQ+AA E LK G Sbjct: 181 DEIGPDNDKTFSSSVLISGKIYGKGMGKTKKKSEQMAAYEALKVLG 226 >gi|226305918|ref|YP_002765878.1| ribonuclease III [Rhodococcus erythropolis PR4] gi|226185035|dbj|BAH33139.1| probable ribonuclease III [Rhodococcus erythropolis PR4] Length = 257 Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 104/224 (46%), Gaps = 9/224 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 + L +G LL ALTH S ++ + ERLEFLGD +LG+ ++ L+ Sbjct: 15 NHDKLLAAVGVDIE-PGLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTENLYLS 73 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVAR---ELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 EG+L+ S+V+ ++VAR E L + + + SI AD + Sbjct: 74 HPDKSEGDLAKIRASVVNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADGM 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 ES++ A++L GI+ A V + ++ D KT LQE P Y++ Sbjct: 134 ESILGAIHLQHGIDTARRVVLDLFDDLLTRAPLLGAGLDWKTSLQELTAEHGAGVPVYEI 193 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T +GPDHD FT V IS G+ SK+ AEQ AA+ K Sbjct: 194 TA-TGPDHDKEFTATVLISDKPLGVGVGRSKKEAEQKAASSAWK 236 >gi|291570878|dbj|BAI93150.1| ribonuclease III [Arthrospira platensis NIES-39] Length = 395 Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats. Identities = 73/238 (30%), Positives = 113/238 (47%), Gaps = 24/238 (10%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 S L K+I F N LL ALTHSS + + + E LEFLGD +L + L+ Sbjct: 165 ELSKLLKKI--PFQNVDLLNHALTHSSYLYEHPKEVKRDNELLEFLGDSVLNFISGEYLY 222 Query: 61 NHFDSA-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S EG+L+ ++LV + ++ A +L L +IR+ + S+ ++ Sbjct: 223 HKYKSVGNEGDLTKLRSALVENKQLAKFAEKLALQQYIRLGKG-----VALNPSLLSNTF 277 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--------SGKFRRDAKTELQEWAHAKFGV 171 E++I A +LD G++ F+ + + SGK D+K LQEW G Sbjct: 278 EAMIGACFLDSGMKKVQEFLQPLFDSVIAEITSLSQGNSGKVAADSKNRLQEWVQKNIGP 337 Query: 172 -TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK---REGI 225 TPEY+ G DH +FTV V + G QG SK+ A + AA + L + G+ Sbjct: 338 ITPEYETIKEEGADHQKQFTVQVMVEGKVYGQGKGLSKKEASKKAAEKALDQIYKLGL 395 >gi|308271416|emb|CBX28024.1| Ribonuclease 3 [uncultured Desulfobacterium sp.] Length = 220 Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats. Identities = 73/205 (35%), Positives = 108/205 (52%), Gaps = 7/205 (3%) Query: 21 SLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + L ++L HSS + + ERLEFLGD +L L I ++ N F EG+LS + Sbjct: 2 NFLVESLRHSSFVNEQSDTQIRDNERLEFLGDAVLNLAIGHIIINRFPELDEGDLSRVRS 61 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +LV+ ++VAR LDL S+I++ SI A+ E+++AA+YLDGG + A Sbjct: 62 NLVNELQVAEVARSLDLGSYIQLGKGEFLTNGRNKNSILANTFEAVVAAIYLDGGYDNAF 121 Query: 137 TFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 ++K + SGK D K+++QE + P Y V SGPDHD F V + Sbjct: 122 RIIEKIYLPILKLSGKSAAAYDFKSKVQELVQTGQEIKPAYNVVEESGPDHDKIFKVELT 181 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEV 219 I+ L G SK+ AEQ AA++ Sbjct: 182 INDLQ-TVGYGKSKKLAEQDAASKA 205 >gi|284054412|ref|ZP_06384622.1| ribonuclease III [Arthrospira platensis str. Paraca] Length = 394 Score = 221 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 73/238 (30%), Positives = 113/238 (47%), Gaps = 24/238 (10%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 S L K+I F N LL ALTHSS + + + E LEFLGD +L + L+ Sbjct: 164 ELSKLLKKI--PFQNVDLLNHALTHSSYLYEHPKEVKRDNELLEFLGDSVLNFISGEYLY 221 Query: 61 NHFDSA-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S EG+L+ ++LV + ++ A +L L +IR+ + S+ ++ Sbjct: 222 HKYKSVGNEGDLTKLRSALVENKQLAKFAEKLALQQYIRLGKG-----VALNPSLLSNTF 276 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--------SGKFRRDAKTELQEWAHAKFGV 171 E++I A +LD G++ F+ + + SGK D+K LQEW G Sbjct: 277 EAMIGACFLDSGMKKVQEFLQPLFDSVIAEITSLSQGNSGKVAADSKNRLQEWVQKNIGP 336 Query: 172 -TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK---REGI 225 TPEY+ G DH +FTV V + G QG SK+ A + AA + L + G+ Sbjct: 337 ITPEYETIKEEGADHQKQFTVQVMVEGKVYGQGKGLSKKEASKKAAEKALDQIYKLGL 394 >gi|293192364|ref|ZP_06609475.1| ribonuclease III [Actinomyces odontolyticus F0309] gi|292820279|gb|EFF79273.1| ribonuclease III [Actinomyces odontolyticus F0309] Length = 240 Score = 221 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 7/211 (3%) Query: 19 NRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL+ AL H S ++ + ERLEFLGD +L ++I+ L+ + E +LS Sbjct: 27 DAPLLQLALVHRSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRA 86 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + VS + + AR + L F+ + SI +D E+LI A YL G+E A Sbjct: 87 ATVSQQPLAAAARRIGLGDFVFLGKGESMHGGRDKDSILSDTFEALIGATYLTSGLEEAR 146 Query: 137 TFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + + + +D KT L E++ A+ Y+V GPDH FT Sbjct: 147 RVILERLSFLLVDAPSRGQHQDWKTILIEYSQAQGLGEVSYEVEGE-GPDHQRVFTARAF 205 Query: 195 ISGL--APAQGMDCSKRAAEQVAAAEVLKRE 223 +S G SK+ AE AA + + R Sbjct: 206 VSERPDPIGSGQASSKKHAENAAAQDAMSRL 236 >gi|282882375|ref|ZP_06291003.1| ribonuclease III [Peptoniphilus lacrimalis 315-B] gi|281297796|gb|EFA90264.1| ribonuclease III [Peptoniphilus lacrimalis 315-B] Length = 230 Score = 221 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 121/226 (53%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 ++ TLEK + Y F N +LL+KALTHSS + +S ERLEFLGD +LGL++ Sbjct: 2 SVDKETLEKNLNYFFKNHALLDKALTHSSYVNENNLKSFDSNERLEFLGDAVLGLVMGEY 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 + ++ EGELS ++ V+ + VA + L I K+ F SI AD Sbjct: 62 YYKKYELYNEGELSKLRSASVNEHALAVVANHIKLGELIHFGKGEIKNGGKFRESILADA 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+LI A++LD ++A + ++ + + RD K++LQE+ T +Y +T Sbjct: 122 FEALIGAVFLDSSFKIARKVILALFEDIFDEIMLYDRDYKSKLQEFVQKDS-CTIKYVLT 180 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPD+D F+ V ISG +GM +K+ +EQ+AA E LK G Sbjct: 181 DEIGPDNDKTFSSSVLISGKIYGKGMGKTKKKSEQMAAYEALKVLG 226 >gi|170695422|ref|ZP_02886567.1| Ribonuclease III [Burkholderia graminis C4D1M] gi|170139613|gb|EDT07796.1| Ribonuclease III [Burkholderia graminis C4D1M] Length = 421 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPSSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|257138458|ref|ZP_05586720.1| ribonuclease III [Burkholderia thailandensis E264] Length = 464 Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 6/199 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F EG Sbjct: 2 ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A++LD Sbjct: 59 DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118 Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG E A + + + + +DAKT LQE+ P Y V G H+ Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178 Query: 188 RFTVVVEISGLAP-AQGMD 205 +F V + L G Sbjct: 179 QFEVECTVPKLDIKVSGSG 197 >gi|255326576|ref|ZP_05367653.1| ribonuclease III [Rothia mucilaginosa ATCC 25296] gi|255296316|gb|EET75656.1| ribonuclease III [Rothia mucilaginosa ATCC 25296] Length = 229 Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 104/224 (46%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLL 59 ++ L KR+G + +LTH S + + E ERLEFLGD +L L I+ + Sbjct: 5 PSVDTRELRKRLGVDI-DAETFLLSLTHRSYAFENPGVEHNERLEFLGDSVLSLAIAEEV 63 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EGEL + +VS ++VAR+LDL +I + + SI AD + Sbjct: 64 YRRYPDLPEGELVKLHHVVVSTVALAKVARDLDLGRYILLGKGEIHTGGADKDSILADTM 123 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKV 177 E++ YL+ G E A V + RD KTEL A A+ Y+V Sbjct: 124 EAIFGLTYLECGREAARDLVLRLIAPLLDDEKVLNSGRDWKTELLNLATARGWGDVRYEV 183 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T GPDH +T V ++ G+ SK+ AE++AA + + Sbjct: 184 TGE-GPDHARVYTAVAIVANQQTGTGVGPSKKEAERLAAEQAYR 226 >gi|329767729|ref|ZP_08259245.1| ribonuclease III [Gemella haemolysans M341] gi|328838830|gb|EGF88424.1| ribonuclease III [Gemella haemolysans M341] Length = 237 Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 103/224 (45%), Gaps = 5/224 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 +TL K+ G+ + A +HSS ++ + +YERLEFLGD ++ L S LF Sbjct: 10 LNTLNKKYGFNLKFSENFKNAFSHSSYTNEKRIAKHLNYERLEFLGDAVVELTTSEFLFK 69 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EGEL+ S+V +T + A +L L I + K ++ AD+ ES Sbjct: 70 KFYELPEGELTKLRASIVCEKTLVKYALQLGLDKCIYLGKGEEKMGGRSRAALLADIFES 129 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFR 180 A+YL+ +EV TF+ D KT LQE+ EY V Sbjct: 130 FTGAMYLESNLEVVKTFLHNTLFTEVQDLEYHSFVDYKTILQEYISKIKLGEIEYVVLDS 189 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +GP H FT + I G G +K+ +EQ++A + L++ G Sbjct: 190 TGPSHSKTFTSAILIGGKQYGSGTATTKKESEQLSAKQALEKLG 233 >gi|332184579|gb|AEE26833.1| Ribonuclease III [Francisella cf. novicida 3523] Length = 230 Score = 221 bits (563), Expect = 9e-56, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 9/221 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS +GY F + +LL +ALTH S +++YERLEFLGD +L +I+ +L+ F Sbjct: 4 EYSRFYNILGYKFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFT 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS + LV T +Q+A L + +I + + I DV E++I Sbjct: 61 DLDEGKLSQLRSKLVKGATLAQLASSLKMDEYIILGASE--QGGHKREKILEDVFEAVIG 118 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD + ++++ L +D+K++LQE PEY + Sbjct: 119 AIYLDSDFATVKKVILRWYQPIILSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETIE 178 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G DH+ FTVV L + S++ AEQ AA ++++ Sbjct: 179 GKDHEQEFTVVAMSKDLNLQVKAQGTSRKKAEQKAAEKMIE 219 >gi|262202009|ref|YP_003273217.1| ribonuclease III [Gordonia bronchialis DSM 43247] gi|262085356|gb|ACY21324.1| ribonuclease III [Gordonia bronchialis DSM 43247] Length = 262 Score = 220 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 8/196 (4%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LL ALTH S ++ + ERLEFLGD +LG++I+ L+ + EGEL+ S+ Sbjct: 24 QLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVVITERLYLSYPDRPEGELAKIRASV 83 Query: 79 VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 V+ + VAR L L + + SI AD +ESL A++++ G+ + Sbjct: 84 VNMHALADVARSLGPGGLGRHLYLGRGEEMTGGRDKDSILADGLESLFGAVFIEHGLATS 143 Query: 136 GTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + + + ++G D KT LQE + + P+Y+ +GPDH+ FT V Sbjct: 144 KRVILRLFDDVIDRAGTLGAGLDWKTSLQELSAEQGLGPPQYQ-ISSTGPDHNKEFTAVA 202 Query: 194 EISGLAPAQGMDCSKR 209 ++G + G+ +K+ Sbjct: 203 VVAGESLGNGVGRTKK 218 >gi|167581151|ref|ZP_02374025.1| ribonuclease III [Burkholderia thailandensis TXDOH] Length = 464 Score = 220 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 6/199 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F EG Sbjct: 2 ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A++LD Sbjct: 59 DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118 Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG E A + + + + +DAKT LQE+ P Y V G H+ Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178 Query: 188 RFTVVVEISGLAP-AQGMD 205 +F V + L G Sbjct: 179 QFEVECTVPKLDIKVSGSG 197 >gi|297539125|ref|YP_003674894.1| ribonuclease III [Methylotenera sp. 301] gi|297258472|gb|ADI30317.1| ribonuclease III [Methylotenera sp. 301] Length = 231 Score = 220 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 6/210 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L KR+ Y F +++LL +ALTH S + ++ ERLE+LGD L +I+ L+ F Sbjct: 1 MTQQDLSKRLSYKFVDKNLLTQALTHRSYA---SQNNERLEYLGDGALNFIIANQLYQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S EG+LS LV T S++A LD+ +++ K SI AD +E++I Sbjct: 58 PSLAEGDLSRLRAQLVKEATISEIAFSLDIGDALKLGEGELKSAGWRRPSILADALEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLDGG A V + + ++ + +D K+ LQE K PEY V S Sbjct: 118 GAVYLDGGFFAAEALVLELYIEKLSTIDPKIIDKDPKSLLQEMLQGKKIAVPEYAVVHTS 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRA 210 G H F V I L G S+R Sbjct: 178 GEAHAQIFIVECFIQKLDIRTVGEGTSRRI 207 >gi|150021479|ref|YP_001306833.1| ribonuclease III [Thermosipho melanesiensis BI429] gi|149794000|gb|ABR31448.1| Ribonuclease III [Thermosipho melanesiensis BI429] Length = 231 Score = 220 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 10/228 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLL 59 M R +E IGY F N+ LL ALTH+S ++ ++ SYERLEFLGD ++ +L+ T+L Sbjct: 1 MERFREGEIEHVIGYRFRNKELLFTALTHTSYANENKKQSYERLEFLGDSVIDILVCTIL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EG ++ +++ S + ++A++ +L +I + R+ S SI ADVV Sbjct: 61 YEQYQTLNEGTMAQIKSAVTSEDILFEIAKKFNLGKYILLGKGERRSRGSEKKSILADVV 120 Query: 120 ESLIAALYLDG--GIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 ESLIAA+YLD +++ K +K +GK D KT+LQE KF P Y Sbjct: 121 ESLIAAIYLDSNKNLKLIENLFSKIFKDYIDIFLTGKRIFDYKTKLQELTQDKFKQLPVY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + T G +F ++I+ ++ SK+ AE++AA ++ Sbjct: 181 ETTTVGG-----KFITTLKINNKIYSKAKGSSKKDAEKLAAKIAYEKL 223 >gi|167619235|ref|ZP_02387866.1| ribonuclease III [Burkholderia thailandensis Bt4] Length = 434 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 6/199 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F EG Sbjct: 2 ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A++LD Sbjct: 59 DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118 Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG E A + + + + +DAKT LQE+ P Y V G H+ Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178 Query: 188 RFTVVVEISGLAP-AQGMD 205 +F V + L G Sbjct: 179 QFEVECTVPKLDIKVSGSG 197 >gi|319763845|ref|YP_004127782.1| ribonuclease iii [Alicycliphilus denitrificans BC] gi|330823891|ref|YP_004387194.1| ribonuclease 3 [Alicycliphilus denitrificans K601] gi|317118406|gb|ADV00895.1| ribonuclease III [Alicycliphilus denitrificans BC] gi|329309263|gb|AEB83678.1| Ribonuclease 3 [Alicycliphilus denitrificans K601] Length = 228 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 6/208 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L++R+ + F++ SLL++A+TH S S + ERLEFLGD +L L +S+LLF Sbjct: 1 MPPDSLPALQQRLQHMFSDPSLLQRAVTHRSFS---ADHNERLEFLGDSVLNLAVSSLLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EGELS LV E+ +A L L +R+ + SI AD +E Sbjct: 58 KRMQGLPEGELSRVRALLVRQESLHGIAVRLQLPQVLRLGEGESRSGGKMRPSILADALE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD G E A V + ++ L + +DAKT LQEW + P+Y+V Sbjct: 118 AVIGAVYLDAGYEQAQALVHRLFEGVELSPRLQEAAKDAKTALQEWLQGRKMSLPQYRVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMD 205 +G H F V E+ L A+ G Sbjct: 178 QTTGVAHKQVFHVACEVPALQLAERGSG 205 >gi|319792225|ref|YP_004153865.1| ribonuclease iii [Variovorax paradoxus EPS] gi|315594688|gb|ADU35754.1| ribonuclease III [Variovorax paradoxus EPS] Length = 228 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 78/219 (35%), Positives = 113/219 (51%), Gaps = 6/219 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ R+ ++F++ LL+ ALTH S S + ERLEFLGD +L L +S LL+ + Sbjct: 7 ALQARLKHSFSDTRLLQLALTHRSFS---ADHNERLEFLGDSVLNLAVSHLLYTRLSALP 63 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS +LV +T ++A EL L+ +R+ + SI AD +E+LI A+Y Sbjct: 64 EGDLSRVRANLVKQDTLHRLALELQLSPLLRLGEGEARSGGPNRPSILADALEALIGAVY 123 Query: 128 LDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD G A V + ++ + +D KTELQEW P Y+V G H Sbjct: 124 LDAGFAAAEALVRRLYESVEITPRMEAAAKDPKTELQEWLQGHKMKLPMYRVAATLGAAH 183 Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 F V E+ L +G+ S+RA EQ AAA +L R Sbjct: 184 KQTFDVECEVPELGFRERGIGGSRRAGEQAAAAAMLIRL 222 >gi|254452330|ref|ZP_05065767.1| ribonuclease III [Octadecabacter antarcticus 238] gi|198266736|gb|EDY91006.1| ribonuclease III [Octadecabacter antarcticus 238] Length = 197 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 78/191 (40%), Positives = 108/191 (56%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 +S ++ +RLEFLGDR+LGL++S L +A EG L+ RFN+LV ETC+ VAR++ Sbjct: 1 MSTPNRDDNQRLEFLGDRVLGLVMSEALLQADVNAPEGLLAPRFNALVRKETCADVARQI 60 Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 DL + +++ ++ AD +E++IAA+Y+D G +VA V W R Sbjct: 61 DLGAVLKLGRSEMLTGGRRKEALLADAMEAVIAAVYIDAGFDVARERVVALWGDRISNVE 120 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 + RD KT LQEWA + P Y T RSGPDH P FT+ V + A SKR A Sbjct: 121 EDARDPKTALQEWAQGQGEPPPSYIETARSGPDHAPIFTIEVRLHSGATDTATAPSKRQA 180 Query: 212 EQVAAAEVLKR 222 EQ AA +L R Sbjct: 181 EQAAAKSLLDR 191 >gi|227875300|ref|ZP_03993442.1| ribonuclease III [Mobiluncus mulieris ATCC 35243] gi|227844205|gb|EEJ54372.1| ribonuclease III [Mobiluncus mulieris ATCC 35243] Length = 261 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 8/200 (4%) Query: 20 RSLLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 LL A+TH S SH + ++ ERLEFLGD +L ++++ L+ +F EG L+ Sbjct: 28 PDLLVLAMTHRSFSHEHGKTGSRGTNERLEFLGDAVLQIIVTEYLYRNFPDEPEGTLAQM 87 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 + VS ++VAR++ L ++R+ + SI +D +E+LI A +L G+ V Sbjct: 88 RAATVSQTPLAEVARKIHLGEYLRLGVGEDRQGGRDKDSILSDTLEALIGATFLSCGLSV 147 Query: 135 AGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 V+++ ++ + + D KT LQE A Y+V +GPDH F+ Sbjct: 148 TRVVVERHLRRFLRNAPRRAVTLDWKTTLQELLSAADLGEVTYEVVA-TGPDHQKHFSAQ 206 Query: 193 VEISGLAPAQGMDCSKRAAE 212 + G +G SK+ AE Sbjct: 207 ALVEGENWGEGQGSSKKIAE 226 >gi|295677176|ref|YP_003605700.1| ribonuclease III [Burkholderia sp. CCGE1002] gi|295437019|gb|ADG16189.1| ribonuclease III [Burkholderia sp. CCGE1002] Length = 426 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + + + + +DAKT LQE+ P Y V Sbjct: 118 GAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|307703518|ref|ZP_07640460.1| ribonuclease III [Streptococcus oralis ATCC 35037] gi|307622925|gb|EFO01920.1| ribonuclease III [Streptococcus oralis ATCC 35037] Length = 190 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 1/179 (0%) Query: 45 FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 FLGD +L LLIS L+ + EG+LS +V E+ + AR+ FI++ Sbjct: 6 FLGDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEE 65 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQE 163 K +I D E+ + AL LD + F+ + + + +D KT LQE Sbjct: 66 KSGGRNRDTILGDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTHLQE 125 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V Y+VT +GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 126 LLQVNGDVDIRYQVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 184 >gi|296117605|ref|ZP_06836189.1| ribonuclease III [Corynebacterium ammoniagenes DSM 20306] gi|295969336|gb|EFG82577.1| ribonuclease III [Corynebacterium ammoniagenes DSM 20306] Length = 244 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 6/210 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A+ + L + ++ L ALTH S ++ + + ERLEFLGD +LGL I+ L Sbjct: 18 AAIDTAPLLASLNVELEDK-YLRLALTHRSFANEHGHLPNNERLEFLGDAVLGLSIAARL 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + E ++S S+VS + VARE+ L +FI + SI AD Sbjct: 77 YEKYPTRPESDISKMRASIVSRFGLADVAREIGLGAFILLGKGEANSNGRDKDSILADTT 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKV 177 E+L A+YL G E A + + + Q+ + R D KT LQE + TP+Y Sbjct: 137 EALFGAIYLQHGFETARRVILELFAQKVDAAVSTRNHMDWKTTLQELCAERKLPTPDYSA 196 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 T +GP+HD FT V + G +G+ + Sbjct: 197 TS-TGPEHDQLFTAQVHVDGQLLGEGVGPN 225 >gi|225075386|ref|ZP_03718585.1| hypothetical protein NEIFLAOT_00391 [Neisseria flavescens NRL30031/H210] gi|224953204|gb|EEG34413.1| hypothetical protein NEIFLAOT_00391 [Neisseria flavescens NRL30031/H210] Length = 239 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 114/224 (50%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + + +++KR+GY F N LL++ALTH S + + ER EF+GD IL ++ +LF Sbjct: 6 LKKQAHRSIQKRLGYEFRNMELLQQALTHRSYN---AKHNERFEFVGDSILNYSVARMLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV+ +++A E+++ + + + K SI AD +E Sbjct: 63 DAFPKLSEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAME 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ AA+ D A V + +R ++ ++D+KT LQE A+ P+Y++ Sbjct: 123 AMFAAVSFDADFSAAEKVVRHLFAERVKRADLNIGKKDSKTALQEALQARRFALPKYRIE 182 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 ++ D F + ++ L S++ AEQ AA E L+ Sbjct: 183 EQAEQTADAMFVISCDLGELGFICNARGSSRKVAEQKAACEALE 226 >gi|91784707|ref|YP_559913.1| ribonuclease III [Burkholderia xenovorans LB400] gi|91688661|gb|ABE31861.1| RNAse III [Burkholderia xenovorans LB400] Length = 428 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A T + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLEVKVSGSG 202 >gi|304389333|ref|ZP_07371298.1| ribonuclease III [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315655502|ref|ZP_07908401.1| ribonuclease III [Mobiluncus curtisii ATCC 51333] gi|315656591|ref|ZP_07909478.1| ribonuclease III [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304327451|gb|EFL94684.1| ribonuclease III [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315490157|gb|EFU79783.1| ribonuclease III [Mobiluncus curtisii ATCC 51333] gi|315492546|gb|EFU82150.1| ribonuclease III [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 249 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 72/214 (33%), Positives = 110/214 (51%), Gaps = 14/214 (6%) Query: 7 STLEKRI---GYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTL 58 +TLE+ + G + LL A+TH S +H + ++ ERLEFLGD +L ++++ Sbjct: 19 ATLERLLADWG-QPVDTELLVVAMTHRSFAHEHGKTGSTGTNERLEFLGDAVLQIVVTEY 77 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF +F EGEL+ + VS ++VAR L L +I + + SI +D Sbjct: 78 LFRNFPDVPEGELAPMRAATVSQTPLAEVARRLHLGDYILLGIGEDRQGGREKDSILSDT 137 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEY 175 +E+LI A YL G+E ++++ + R L++ R D KT L E+A A PEY Sbjct: 138 LEALIGASYLTSGLESTRVTIERHLR-RYLRNAPRRAVGMDWKTHLSEFAAANSLGEPEY 196 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 V SGPDH FT + I+G +G SK+ Sbjct: 197 -VVQGSGPDHARVFTAQIRIAGEVLGEGQGTSKK 229 >gi|283457874|ref|YP_003362474.1| dsRNA-specific ribonuclease [Rothia mucilaginosa DY-18] gi|283133889|dbj|BAI64654.1| dsRNA-specific ribonuclease [Rothia mucilaginosa DY-18] Length = 229 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 104/224 (46%), Gaps = 6/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLL 59 ++ L KR+G + +LTH S + + E ERLEFLGD +L L I+ + Sbjct: 5 PSVDTRELRKRLGVDI-DAETFLLSLTHRSYAFENPGVEHNERLEFLGDSVLSLAIAEEV 63 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EGEL + +VS ++VAR+LDL +I + + SI AD + Sbjct: 64 YRRYPDLPEGELVKLHHVVVSTVALAKVARDLDLGRYILLGKGEIHTGGADKDSILADTM 123 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKV 177 E++ YL+ G E A V + RD KTEL A A+ Y+V Sbjct: 124 EAIFGLTYLECGREAARDLVLRLIAPLLDDEKVLNSGRDWKTELLNLATARGWGDVRYEV 183 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T GPDH +T V ++ G+ SK+ AE++AA + + Sbjct: 184 TGE-GPDHARVYTAVAIVANQQAGTGVGPSKKEAERLAAEQAYR 226 >gi|146281615|ref|YP_001171768.1| ribonuclease III [Pseudomonas stutzeri A1501] gi|145569820|gb|ABP78926.1| ribonuclease III [Pseudomonas stutzeri A1501] Length = 208 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 71/192 (36%), Positives = 96/192 (50%), Gaps = 6/192 (3%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 ALTH S + + ERLEFLGD IL + LFNHF A+EG+LS LV ET Sbjct: 3 LALTHRSYA---GRNNERLEFLGDAILNFVAGEALFNHFPQAREGQLSRLRARLVKGETL 59 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + +AR +L +R+ S K SI AD +E+LI A+YLD G++VA V + Sbjct: 60 AVLARGFELGDHLRLGSGELKSGGYRRESILADTLEALIGAIYLDAGMDVARERVIAWLA 119 Query: 145 QRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201 L +D KT LQE+ ++ P Y+V G H F V +++ L Sbjct: 120 NELQGLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEPHCRTFFVECQVALLNDKT 179 Query: 202 QGMDCSKRAAEQ 213 G S+R AEQ Sbjct: 180 HGQGASRRIAEQ 191 >gi|323526859|ref|YP_004229012.1| ribonuclease III [Burkholderia sp. CCGE1001] gi|323383861|gb|ADX55952.1| ribonuclease III [Burkholderia sp. CCGE1001] Length = 475 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPSSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A T + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|307718753|ref|YP_003874285.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM 6192] gi|306532478|gb|ADN02012.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM 6192] gi|315185644|gb|EFU19412.1| RNAse III [Spirochaeta thermophila DSM 6578] Length = 194 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 2/185 (1%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ERLEFLGD +LGL ++ L+ F +EGEL+ + +VS +T ++AR + + +FI Sbjct: 3 DNERLEFLGDAVLGLAVADYLYRTFPEKQEGELARIKSFVVSEDTLYEIARRIKVDNFIL 62 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRD 156 +S ++ AD +E++I A +LD G E A FV + K + ++D Sbjct: 63 ISKGEEYAGGRTKKALLADAMEAIIGAYFLDAGFEAARDFVLRLVVPEIEKVVENRHKKD 122 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 KT LQE+ F P Y+V + GP+H+ F + V+I G +K+ AEQ AA Sbjct: 123 YKTLLQEYVQKNFKTYPRYRVVEKLGPEHNRTFRIEVQIRDKKYGPGEGKNKKEAEQSAA 182 Query: 217 AEVLK 221 + + Sbjct: 183 SIAYR 187 >gi|161621443|ref|NP_108012.2| ribonuclease III [Mesorhizobium loti MAFF303099] Length = 237 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 101/205 (49%), Positives = 131/205 (63%), Gaps = 1/205 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L +R G+AFA+R L++ALTH+S + YER EFLGDR+LGL+++ +L F Sbjct: 14 EALVERTGHAFADRQRLQRALTHASARGANAGTDYERFEFLGDRVLGLVVADMLLAAFPD 73 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EGELS+R N+LV+AE S++A + L IR SD+R +++AD +ESLIA Sbjct: 74 AAEGELSLRLNALVNAEALSEIAEHIGLPDLIRAGSDVRGLEGRKRVNLRADALESLIAV 133 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LYLDGG+E A F+ KYW+ R+ SG RRDAKTELQEWAH P Y++ R GPDH Sbjct: 134 LYLDGGLEAARAFIHKYWQPRSQASGAARRDAKTELQEWAHQAASAVPAYQIDSREGPDH 193 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRA 210 DP FTV V + PA G SKR Sbjct: 194 DPLFTVSVRVGAFQPATGSGRSKRE 218 >gi|218440872|ref|YP_002379201.1| ribonuclease III [Cyanothece sp. PCC 7424] gi|218173600|gb|ACK72333.1| Ribonuclease III [Cyanothece sp. PCC 7424] Length = 228 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 12/204 (5%) Query: 18 ANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 N+ L ALTH S + + +E ERLEFLGD +L + L+ + E +LS Sbjct: 8 KNQQLWLCALTHRSYVNEHLEIKEHNERLEFLGDAVLAFVAGEFLYQRYPHLSEAQLSRL 67 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 LV ++ A +L + +R+ KD ++ +D E++I A +LD GI+ Sbjct: 68 RARLVDETQLAKFAVQLGIGQLMRLGKGAIKDGGRENPALLSDTFEAIIGAYFLDAGIDA 127 Query: 135 AGTFVDKYWK---------QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 FV ++ Q + + + D K Q+W A F PEY + SGPDH Sbjct: 128 VREFVRPLFQSVADILMVAQSEILTSEKLLDPKNRFQQWTLANFTQNPEYVIIEESGPDH 187 Query: 186 DPRFTVVVEISGLAPAQGMDCSKR 209 FT V++ G+ G K+ Sbjct: 188 AKEFTAQVKVQGIVYGIGRGRRKQ 211 >gi|319639176|ref|ZP_07993927.1| ribonuclease 3 [Neisseria mucosa C102] gi|317399360|gb|EFV80030.1| ribonuclease 3 [Neisseria mucosa C102] Length = 239 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 112/219 (51%), Gaps = 6/219 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + ++KR+GY F N LL++ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HRAIQKRLGYEFRNMELLQQALTHRSYN---AKHNERFEFVGDSILNYSVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS +LV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LSEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + +R ++ ++D+KT LQE A+ P+Y++ ++ Sbjct: 128 VSFDADFSAAEKVVRHLFAERVKRADLNIGKKDSKTALQEALQARRFALPKYRIEEQAEQ 187 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 D F + ++ L S++ AEQ AA E L+ Sbjct: 188 TADAMFVISCDLGELGFICNARGSSRKVAEQKAACEALE 226 >gi|307730527|ref|YP_003907751.1| ribonuclease III [Burkholderia sp. CCGE1003] gi|307585062|gb|ADN58460.1| ribonuclease III [Burkholderia sp. CCGE1003] Length = 420 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPSSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYELAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A T + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLEVKVSGSG 202 >gi|298346956|ref|YP_003719643.1| ribonuclease III [Mobiluncus curtisii ATCC 43063] gi|298237017|gb|ADI68149.1| ribonuclease III [Mobiluncus curtisii ATCC 43063] Length = 249 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 72/214 (33%), Positives = 110/214 (51%), Gaps = 14/214 (6%) Query: 7 STLEKRI---GYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTL 58 +TLE+ + G + LL A+TH S +H + ++ ERLEFLGD +L ++++ Sbjct: 19 ATLERLLADWG-QPVDTELLVVAMTHRSFAHEHGKTGSTGTNERLEFLGDAVLQIVVTEY 77 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF +F EGEL+ + VS ++VAR L L +I + + SI +D Sbjct: 78 LFRNFPDVPEGELAPMRAATVSQTPLAEVARRLHLGDYILLGIGEDRQGGREKDSILSDT 137 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEY 175 +E+LI A YL G+E ++++ + R L++ R D KT L E+A A PEY Sbjct: 138 LEALIGASYLTSGLESTRVTIERHLR-RYLRNAPRRAVGMDWKTHLSEFAAANSLGEPEY 196 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 V SGPDH FT + I+G +G SK+ Sbjct: 197 -VVQGSGPDHARVFTAQIRIAGEVLGEGQGTSKK 229 >gi|167837348|ref|ZP_02464231.1| ribonuclease III [Burkholderia thailandensis MSMB43] Length = 452 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 6/199 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F EG Sbjct: 2 ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFGKLDEG 58 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A+++D Sbjct: 59 DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFVD 118 Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG E A + + + + +DAKT LQE+ P Y V G H+ Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178 Query: 188 RFTVVVEISGLAP-AQGMD 205 +F V + L G Sbjct: 179 QFEVECTVPKLDIKVSGSG 197 >gi|81776564|sp|Q985A6|RNC_RHILO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|14027203|dbj|BAB54157.1| ribonuclease III [Mesorhizobium loti MAFF303099] Length = 221 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 100/201 (49%), Positives = 130/201 (64%), Gaps = 1/201 (0%) Query: 11 KRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 +R G+AFA+R L++ALTH+S + YER EFLGDR+LGL+++ +L F A EG Sbjct: 2 ERTGHAFADRQRLQRALTHASARGANAGTDYERFEFLGDRVLGLVVADMLLAAFPDAAEG 61 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 ELS+R N+LV+AE S++A + L IR SD+R +++AD +ESLIA LYLD Sbjct: 62 ELSLRLNALVNAEALSEIAEHIGLPDLIRAGSDVRGLEGRKRVNLRADALESLIAVLYLD 121 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 GG+E A F+ KYW+ R+ SG RRDAKTELQEWAH P Y++ R GPDHDP F Sbjct: 122 GGLEAARAFIHKYWQPRSQASGAARRDAKTELQEWAHQAASAVPAYQIDSREGPDHDPLF 181 Query: 190 TVVVEISGLAPAQGMDCSKRA 210 TV V + PA G SKR Sbjct: 182 TVSVRVGAFQPATGSGRSKRE 202 >gi|241758554|ref|ZP_04756671.1| ribonuclease III [Neisseria flavescens SK114] gi|241321297|gb|EER57457.1| ribonuclease III [Neisseria flavescens SK114] Length = 239 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 112/219 (51%), Gaps = 6/219 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + ++KR+GY F N LL++ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HRAIQKRLGYEFRNMELLQQALTHRSYN---AKHNERFEFVGDSILNYSVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS +LV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LSEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + +R ++ ++D+KT LQE A+ P+Y++ ++ Sbjct: 128 VSFDADFSAAEKVVRHLFAERVKRADLNIGKKDSKTALQEALQARRFALPKYRIEEQAEQ 187 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 D F + ++ L S++ AEQ AA E L+ Sbjct: 188 TADAMFVISCDLGELGFICNARGSSRKVAEQKAACEALE 226 >gi|167570687|ref|ZP_02363561.1| ribonuclease III [Burkholderia oklahomensis C6786] Length = 454 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 6/199 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F EG Sbjct: 2 ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A++LD Sbjct: 59 DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118 Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG E A + + + + +DAKT LQE+ P Y V G H+ Sbjct: 119 GGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178 Query: 188 RFTVVVEISGL-APAQGMD 205 +F V + L G Sbjct: 179 QFEVECTVPKLDVKVSGSG 197 >gi|312140459|ref|YP_004007795.1| ribonuclease iii [Rhodococcus equi 103S] gi|325675924|ref|ZP_08155607.1| ribonuclease III [Rhodococcus equi ATCC 33707] gi|311889798|emb|CBH49115.1| ribonuclease III [Rhodococcus equi 103S] gi|325553162|gb|EGD22841.1| ribonuclease III [Rhodococcus equi ATCC 33707] Length = 256 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 9/223 (4%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + +L +G LL ALTH S ++ + + ERLEFLGD +LGL I+ L+ Sbjct: 15 EDHGSLLAALGVPLT-EDLLTLALTHRSYAYEHGGLPTNERLEFLGDSVLGLTITERLYT 73 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVAR---ELDLASFIRVSSDLRKDVCSFMTSIQADV 118 EGEL+ S+V+ ++VAR L + + + SI AD Sbjct: 74 AHPEKSEGELAKIRASIVNMHALAEVARGLGPGGLGAHLLLGKGEEMTGGRDKPSILADG 133 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYK 176 +ESL+ A++L+ GI+ A V + ++ K D KT LQE + P Y+ Sbjct: 134 MESLLGAIHLEHGIDTARRVVLDLFADLLSRAPKLGAGLDWKTSLQELTAERGIGVPSYE 193 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +T +GPDHD FT V + G A G+ SK+ AEQ AA+ Sbjct: 194 ITA-TGPDHDKEFTATVVVGGDAFGVGVGRSKKEAEQKAASTA 235 >gi|150402698|ref|YP_001329992.1| ribonuclease III [Methanococcus maripaludis C7] gi|150033728|gb|ABR65841.1| Ribonuclease III [Methanococcus maripaludis C7] Length = 229 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 101/224 (45%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + L ++ F + + ++A HSS + + E ERLE+LGD +L L+IS LF Sbjct: 3 NFEKLLSKLDIKFNDLDIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLELIISEYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +S EGE+S V A++L ++ + +I +DV E Sbjct: 63 KK-ESLSEGEMSKLRAKYVCESALFTYAKKLKFNDYVLLGKGELNSKGYNKPAIISDVFE 121 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + IAA+YLD G++ A FV+ + + S + D KT LQE+ T EY Sbjct: 122 AFIAAIYLDQGLDSAKKFVNNHIIPIIEENSKELFIDYKTRLQEF-PELNNKTIEYINLE 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G HD +F V V+ +G SK+ AE AA L + Sbjct: 181 EVGEPHDKKFIVAVKSGRKMLGKGTGKSKKEAEMKAAKNALLKL 224 >gi|260462323|ref|ZP_05810531.1| ribonuclease III [Mesorhizobium opportunistum WSM2075] gi|259031817|gb|EEW33085.1| ribonuclease III [Mesorhizobium opportunistum WSM2075] Length = 237 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 101/205 (49%), Positives = 129/205 (62%), Gaps = 1/205 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDS 65 L +R G+AFA+R L++ALTH+S + YER EFLGDR+LGL+++ +L F Sbjct: 14 EALVERTGHAFADRQRLQRALTHASARGANAGIDYERFEFLGDRVLGLVVADMLLAAFPD 73 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EGELS+R N+LV+AE S +A + L IR SD+R +++AD +ESLIA Sbjct: 74 AAEGELSLRLNALVNAEALSDIAEHIGLPDLIRAGSDIRGLDGRKRVNLRADALESLIAV 133 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LYLDGG+E A F+ KYW R+ SG RRDAKTELQEWAH P Y++ R GPDH Sbjct: 134 LYLDGGLEAARAFIHKYWLPRSQASGAARRDAKTELQEWAHQAASAVPAYQIDSREGPDH 193 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRA 210 DP FTV V + PA G SKR Sbjct: 194 DPLFTVSVRVGTFQPAVGSGRSKRE 218 >gi|295396031|ref|ZP_06806215.1| ribonuclease III [Brevibacterium mcbrellneri ATCC 49030] gi|294971119|gb|EFG47010.1| ribonuclease III [Brevibacterium mcbrellneri ATCC 49030] Length = 230 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 102/220 (46%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 S L KR+G + L +LTH S + + ERLEFLGD +L L + LF+H Sbjct: 2 SELNKRLGVDI-DPETLRLSLTHRSYAFENGGIPTNERLEFLGDAVLQLKTTKWLFDHNT 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EG L+ +++V++ + VAR + F+ + + + SI AD VE++I Sbjct: 61 EASEGRLAKMRSAVVNSRALAGVARTYGIGEFLLLGNGEERTGGRDKDSILADTVEAIIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A Y+ G + A V++ + D KT LQE A Y VT G Sbjct: 121 ACYVSQGPDAANALVERLVGPLLEDAVNLGAGMDYKTTLQEAAADLSLGAVHYDVTGE-G 179 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 PDH FT V + A G SK+ AE VAA +K+ Sbjct: 180 PDHARVFTAVAYLGETRWASGEGTSKKNAELVAAEIAVKK 219 >gi|295698532|ref|YP_003603187.1| ribonuclease III [Candidatus Riesia pediculicola USDA] gi|291157177|gb|ADD79622.1| ribonuclease III [Candidatus Riesia pediculicola USDA] Length = 227 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 118/223 (52%), Gaps = 12/223 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+K IGY F + L ++LTH S + S+ ERLEFLGD IL L+IS L++ F S E Sbjct: 2 LQKNIGYRFNHLDFLYQSLTHRSTNLSH---NERLEFLGDSILNLIISKFLYDEFLSKNE 58 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GE+S ++LV T S +A +L + SFI + K+ SI ++ +E++I A++L Sbjct: 59 GEMSRTRSNLVKEGTLSDIANQLGIGSFINLGLGEIKNHGFLKRSILSNALEAIIGAIFL 118 Query: 129 DGG--IEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D G I+ + +++ A + + +D KT+LQE P+Y++ G D Sbjct: 119 DSGSNIKTIENVIMNWYRNHADLINLSRDEKDPKTKLQEHLQKFHLPLPKYELLKSVGYD 178 Query: 185 HDPRFTVVVEISGLA-----PAQGMDCSKRAAEQVAAAEVLKR 222 H+ +FT+V ++ G G + AE++AA + + Sbjct: 179 HEKQFTIVCKVFGFRKSDHFITIGTGKKYKEAEKLAAKHMFDK 221 >gi|297717874|gb|ADI50080.1| ribonuclease III [Candidatus Odyssella thessalonicensis L13] Length = 211 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 66/210 (31%), Positives = 122/210 (58%), Gaps = 5/210 (2%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 ++ + F + SL +KA+TH S +ERLEFLGDR+LG++++ +L+ F KEG+L Sbjct: 2 KLKFTFKDPSLFDKAITHPSFRRRKVNDFERLEFLGDRVLGIIVAEMLYKAFPLEKEGDL 61 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + R L+S + C ++A E++L I+V +++ +D +E+LI A++LD G Sbjct: 62 AKRQAVLISRDVCQEIAYEIELHEDIKV----VGTGLDGNSAVLSDAMEALIGAMFLDQG 117 Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 +EV + W++R + +D K+ LQEW ++ P Y++ ++GP H P F + Sbjct: 118 LEVTRQHILPLWEKRLAITQAPPKDHKSLLQEWTQSRGLGIPAYELVNQTGPAHAPEFEI 177 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++++ + + S++ AEQ AA ++L+ Sbjct: 178 LLKVDDHSV-KARGKSRKLAEQEAAKQMLQ 206 >gi|295105981|emb|CBL03524.1| RNAse III [Gordonibacter pamelaeae 7-10-1-b] Length = 281 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNH 62 + + ++ + Y F + LL A+TH S + S + SYERLEFLGD ILG +++ + F+ Sbjct: 10 KLARAQEILDYRFDSEHLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVAAIAFHR 69 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ +LVS + S VA L A I S + S +V E++ Sbjct: 70 FHDLDEGGLTRIKVALVSGASLSDVADRLGFADVIVFGSSETGTGKRGLHSALENVYEAV 129 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +AALYLDGGI A FV++ R L + + K+ LQE G+TP YK+ Sbjct: 130 VAALYLDGGIGAAQEFVERTLIPRMSLDMAREPENPKSALQEKLQED-GITPTYKLVETQ 188 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP HD F V A+G +K+ AE AA L R G Sbjct: 189 GPPHDRTFVAQVFAGTQGLARGTGRTKKEAESQAAKSTLARLG 231 >gi|325265700|ref|ZP_08132389.1| ribonuclease III [Kingella denitrificans ATCC 33394] gi|324982831|gb|EGC18454.1| ribonuclease III [Kingella denitrificans ATCC 33394] Length = 242 Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 66/216 (30%), Positives = 108/216 (50%), Gaps = 6/216 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L++R+GY F LL++ALTH S + + ERLEF+GD I+ +++ +L++ F Sbjct: 12 QLQQRLGYTFRQPELLQQALTHRSAG---KNNNERLEFVGDGIVNFVVAQMLYHAFPDLP 68 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG LSV LV +++AREL + + + + K SI AD +E+L AA+ Sbjct: 69 EGRLSVLRTHLVKEAALAEMARELGVGAALTLGVGELKSGGHDRPSILADALEALFAAIR 128 Query: 128 LDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD + + + + QR + + +D KT LQE A P+Y++ ++G Sbjct: 129 LDADLPTVERIIQQLFSQRIAHIDQHQPAKDNKTRLQEALQACRLPLPKYRIEKQTGEGE 188 Query: 186 DPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220 +F V ++ L S+R AEQ A + L Sbjct: 189 HAQFDVSCDLGELGKITYAHAHSRREAEQECARQAL 224 >gi|29840106|ref|NP_829212.1| ribonuclease III [Chlamydophila caviae GPIC] gi|33301541|sp|Q823R4|RNC_CHLCV RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|29834454|gb|AAP05090.1| ribonuclease III [Chlamydophila caviae GPIC] Length = 237 Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 102/224 (45%), Gaps = 4/224 (1%) Query: 1 MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIS 56 M+ + +E ++ + F LL ALTH S + E ERLEFLGD +L L+++ Sbjct: 1 MNNLINIKEVEAKLNFTFTQPKLLVTALTHPSYRNETVTITEDSERLEFLGDAVLCLIVT 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F S EG LS +L++A +C Q L L + + R TS A Sbjct: 61 EHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEHLLIGKGERIQNERGRTSAYA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 ++ E+++ A+YLDGG+ A + + K LQ+ + P Y+ Sbjct: 121 NLFEAVLGAVYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKQLRTLPVYQ 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 T + P + + V ++ +G SK+ AE++AA + L Sbjct: 181 CTPWTSQQGVPGYHIRVIVNDEVWGEGCALSKKEAEKLAAQKAL 224 >gi|229140493|ref|ZP_04269048.1| Ribonuclease 3 [Bacillus cereus BDRD-ST26] gi|228643054|gb|EEK99330.1| Ribonuclease 3 [Bacillus cereus BDRD-ST26] Length = 210 Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 5/191 (2%) Query: 24 EKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +A THSS + ++ E ERLEFLGD +L L +S LF + + EGEL+ ++V Sbjct: 2 IQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIV 61 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 + + A EL S + + ++ ADV E+ I ALYLD G+E F+ Sbjct: 62 CEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFL 121 Query: 140 DKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + + + D K++LQE EY++ GP H+ F V ++ + Sbjct: 122 KEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTLNNV 181 Query: 199 APAQGMDCSKR 209 A G SK+ Sbjct: 182 ALGLGSGKSKK 192 >gi|269838233|ref|YP_003320461.1| ribonuclease III [Sphaerobacter thermophilus DSM 20745] gi|269787496|gb|ACZ39639.1| ribonuclease III [Sphaerobacter thermophilus DSM 20745] Length = 259 Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 68/209 (32%), Positives = 96/209 (45%), Gaps = 10/209 (4%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSY--------QESYERLEFLGDRILGLLISTLLFNH 62 +R+G F + LL ALTH S + ++S ERLEFLGD +LG++ + L+ Sbjct: 24 QRLGIEFRDLDLLRLALTHRSYLNELGISQIEAVRDSNERLEFLGDSVLGMITAEFLYRR 83 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ +LV ET ++ AR L + + I A E++ Sbjct: 84 FPRLPEGMLTAYRTALVRTETLARWARRFGLDELLYLGRGEITADGEIRDRILAGAFEAV 143 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 IAA+YLD GI F+ + + A + + + K LQE VTP Y+ Sbjct: 144 IAAIYLDRGIRATRRFLRQLLIEDAEQIITEGQETNYKGRLQELVQEHMRVTPMYRTVAV 203 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SGP HD FTV V + G G SKR Sbjct: 204 SGPAHDRVFTVEVVVGGECLGVGTGSSKR 232 >gi|78186018|ref|YP_374061.1| ribonuclease III [Chlorobium luteolum DSM 273] gi|90101633|sp|Q3B6L3|RNC_PELLD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|78165920|gb|ABB23018.1| RNAse III [Chlorobium luteolum DSM 273] Length = 276 Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 96/207 (46%), Gaps = 7/207 (3%) Query: 21 SLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 L ALTH S+ H S +RLEFLGD +LGL+IS L+ F EGELS Sbjct: 46 ELYATALTHRSMVHDTTAPEITRSNQRLEFLGDSVLGLIISEYLYRRFPEGTEGELSSYR 105 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 +V+ ++ + AR LDL + + + TS AD E+L A+YLD G++ Sbjct: 106 AKIVNGKSLAGFARNLDLGIHLIIGESADQQRIRTSTSTLADAFEALTGAIYLDRGLDAV 165 Query: 136 GTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 F+++ + K+ L E + P Y V G +H+ FT+ V Sbjct: 166 REFIEEQIIDSPAFEAMVSTENNHKSRLIEHTQSHQLPPPVYTVLSEEGAEHEKTFTIEV 225 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVL 220 +G +G K+ AEQ+AA E + Sbjct: 226 SCNGRRLGRGTALRKKDAEQLAAEEAM 252 >gi|46201860|ref|ZP_00208277.1| COG0571: dsRNA-specific ribonuclease [Magnetospirillum magnetotacticum MS-1] Length = 230 Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 80/211 (37%), Positives = 113/211 (53%), Gaps = 4/211 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L +G+AFA LL +ALTH S + + YERLEFLGDR+LGL+++ +LF Sbjct: 6 ADLPALLGHAFARPELLSQALTHPSTQQHRRSQGSDPYERLEFLGDRVLGLVVAEMLFLR 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ R +LV E +++A E+ L + ++ I AD E++ Sbjct: 66 FPDEAEGALARRHAALVRREAVARIANEIGLGRHLVLAKGESDAGGRTNPGILADACEAV 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I ALY D G VA FV W+ ++ +DAKT LQEWA + P YK+ + G Sbjct: 126 IGALYADAGFAVAAAFVRSRWEPMMEEALAPPKDAKTGLQEWAQGRGKPLPAYKMLGQEG 185 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 P H+P F + V + G+ A G SKR AEQ Sbjct: 186 PPHEPTFLMEVSVEGVGSAVGRGASKRVAEQ 216 >gi|312877236|ref|ZP_07737204.1| ribonuclease III [Caldicellulosiruptor lactoaceticus 6A] gi|311795950|gb|EFR12311.1| ribonuclease III [Caldicellulosiruptor lactoaceticus 6A] Length = 222 Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 114/223 (51%), Gaps = 11/223 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+ +GY F +++LL ALTH S +HS + YERLEFLGD L L +S LF HF Sbjct: 2 EEIERALGYTFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPEL 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ ++V ++T S+VA +L+L + I + + SI ADV+E++ A+ Sbjct: 62 SEGELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEY---KVTFRS 181 +++ G ++ + K K+ GK D KT+LQE + Y ++ + Sbjct: 122 FIESGFDIVEKIIVNLLKPYIQKAVTGKLFYDYKTKLQEIVQREGNKKIVYKDCEIIEK- 180 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + I G ++G SK+ A+Q AA + L G Sbjct: 181 -----KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218 >gi|16331055|ref|NP_441783.1| ribonuclease III [Synechocystis sp. PCC 6803] gi|2500554|sp|P74368|RNC1_SYNY3 RecName: Full=Ribonuclease 3 1; AltName: Full=Ribonuclease III 1; Short=RNase III 1 gi|1653550|dbj|BAA18463.1| ribonuclease III [Synechocystis sp. PCC 6803] Length = 231 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 112/220 (50%), Gaps = 12/220 (5%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + L +ALTH S + + SY+RLEFLGD +LG ++ +LF + E EL+ + Sbjct: 11 DPQLKLEALTHRSYCNEHPGTPSYDRLEFLGDAVLGFVVGRILFERYPHFTEAELTRLRS 70 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 LV+ + +AR L +A IR+S L +D SI ADV ESL+ A LD G+ Sbjct: 71 QLVNQNQLAYLARFLHIAPEIRLSQSLARDDGQSSPSILADVFESLLGAALLDRGLTAVE 130 Query: 137 TFVDKYWKQRALKSGKFR----------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 F+ + + + K + D K+ LQ+WA AK PEY++ SGP H Sbjct: 131 DFIQELFVPILEQWEKSQDGRSPKLVPTMDVKSMLQQWALAKTKQLPEYELINTSGPPHA 190 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 FT V+++G QG SK+ A + AA E LK G+ Sbjct: 191 QEFTFTVKVAGKIHGQGSGPSKQIATKQAALEALKSLGLL 230 >gi|187924875|ref|YP_001896517.1| ribonuclease III [Burkholderia phytofirmans PsJN] gi|187716069|gb|ACD17293.1| Ribonuclease III [Burkholderia phytofirmans PsJN] Length = 418 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|87199824|ref|YP_497081.1| ribonuclease III [Novosphingobium aromaticivorans DSM 12444] gi|87135505|gb|ABD26247.1| RNAse III [Novosphingobium aromaticivorans DSM 12444] Length = 252 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 87/208 (41%), Positives = 114/208 (54%), Gaps = 3/208 (1%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 G A A + +ALTH S+ Y+RLEFLGDR+LGL I+ L A EG+LS Sbjct: 45 GAAPARPEIWAEALTHGSMGEP--RDYQRLEFLGDRVLGLAIADWLHEK-SDAAEGKLSQ 101 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 R N+LVS ETC+ VAR + LA IR+ R D + +I DV+E+LI AL+++ G E Sbjct: 102 RLNALVSRETCADVARTIGLAGHIRLGKQARDDGGAQSDNILGDVMEALIGALFVERGFE 161 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 A FV K W++ L R+ K LQEWA P Y + R GPDH FTV V Sbjct: 162 AARKFVRKAWEKPMLSGTGQRKHPKAALQEWAAGNRRKPPVYTLVSREGPDHAATFTVSV 221 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLK 221 E+ G+ A SK+ AE AA ++ Sbjct: 222 EVKGVGEASARGSSKQEAETAAARAFMQ 249 >gi|167586632|ref|ZP_02379020.1| ribonuclease III [Burkholderia ubonensis Bu] Length = 278 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 6/199 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F EG Sbjct: 2 ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFGKLDEG 58 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A++LD Sbjct: 59 DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118 Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG E A + + + + +DAKT LQE+ P Y V G H+ Sbjct: 119 GGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178 Query: 188 RFTVVVEISGL-APAQGMD 205 +F V + L G Sbjct: 179 QFEVECTVPKLDVKVSGSG 197 >gi|111225163|ref|YP_715957.1| ribonuclease III [Frankia alni ACN14a] gi|111152695|emb|CAJ64436.1| Ribonuclease III (RNase III) [Frankia alni ACN14a] Length = 272 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 101/203 (49%), Gaps = 8/203 (3%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL++ALTH S ++ + ERLEFLGD +LGL+++ LF EG+L+ + Sbjct: 23 DPELLDRALTHRSYAYEKGGLPTNERLEFLGDAVLGLVVTAALFLRHPDLPEGQLAKQRA 82 Query: 77 SLVSAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S+V+ + VAR + L ++ + SI AD +E++I A+YL G++ Sbjct: 83 SVVNMRALADVARGIGPDGLGPYLLLGRGEETTGGRDKASILADTLEAIIGAVYLSAGLD 142 Query: 134 VAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 A FV + + ++ D KT LQE PEY V +GPDH RFT Sbjct: 143 AASIFVHRLFDPLLDEAAGRGAGLDWKTSLQEQTALLALGPPEY-VVEEAGPDHAKRFTA 201 Query: 192 VVEISGLAPAQGMDCSKRAAEQV 214 I+G +G SK+ AEQ Sbjct: 202 HARIAGEPLGEGEGGSKKEAEQR 224 >gi|329770217|ref|ZP_08261607.1| ribonuclease III [Gemella sanguinis M325] gi|328837023|gb|EGF86667.1| ribonuclease III [Gemella sanguinis M325] Length = 237 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 100/223 (44%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + L K + + A +HSS ++ + +YERLEFLGD ++ L S LF Sbjct: 10 LNKLNKDYNFNLKYSNNFRMAFSHSSYTNEKRIAKHLNYERLEFLGDAVVELTTSEFLFK 69 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F + EGEL+ S+V +T + A +L+L I + K ++ AD+ ES Sbjct: 70 KFPNLAEGELTKLRASIVCEKTLVKYALQLNLDKCIFLGKGEEKMGGRSRAALLADIFES 129 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFR 180 A+YL+ G+E TF+ D KT LQE+ EY V Sbjct: 130 FTGAMYLEAGLETVKTFLSNTLFTEVDSFEYLSFVDYKTILQEYVSKIKLGVIEYTVLDS 189 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H FT V I G G +K+ +EQ++A L++ Sbjct: 190 SGPSHLKTFTSAVIIDGKQYGSGTAKTKKESEQLSAKAALEKL 232 >gi|296139284|ref|YP_003646527.1| ribonuclease III [Tsukamurella paurometabola DSM 20162] gi|296027418|gb|ADG78188.1| ribonuclease III [Tsukamurella paurometabola DSM 20162] Length = 249 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 64/213 (30%), Positives = 104/213 (48%), Gaps = 9/213 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 A + L + +G + LL ALTH S ++ + ERLEFLGD +LG+ ++ L Sbjct: 9 PASDRTPLLEALGVELDD-ELLTLALTHRSYAYEAGGLPTNERLEFLGDSVLGISVTEWL 67 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQA 116 + EGEL+ S+V+ ++VAR+L L + + + SI A Sbjct: 68 YVTHPDKPEGELAKIRASVVNMHALARVARKLGEGGLGAHLYLGRGEELTGGRDKDSILA 127 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPE 174 D +E+L+ A++++ GI+ A + V + ++ S D KT LQE + P Sbjct: 128 DGMEALLGAVHIEHGIDTARSVVLRLFEPMLTTSSTMGAGLDWKTSLQELTAERDLGVPA 187 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 Y++T +GPDHD FT VV I +G+ + Sbjct: 188 YRITS-TGPDHDKEFTAVVVIDEADLGEGVGRT 219 >gi|302525051|ref|ZP_07277393.1| ribonuclease III [Streptomyces sp. AA4] gi|302433946|gb|EFL05762.1| ribonuclease III [Streptomyces sp. AA4] Length = 246 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 109/229 (47%), Gaps = 9/229 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 A ++L + +G + LL +LTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 9 PAADPASLLEALGVEL-DPELLRLSLTHRSYAYEHGGLPPNERLEFLGDAVLGLVVTDHL 67 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVAR---ELDLASFIRVSSDLRKDVCSFMTSIQA 116 + EG+L+ S+V+ + VAR E L + + + SI A Sbjct: 68 YTTHPDLPEGQLAKLRASVVNMHALAGVARGLGEGGLGAHLLLGKGEELTGGRDKASILA 127 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPE 174 D +E++I A YL GIEVA V + ++ D KT LQE + PE Sbjct: 128 DGLEAVIGATYLAHGIEVARKLVHHLFDGLLAEAPLRGAGLDWKTSLQELTASGGLGVPE 187 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V SGPDH FT V ++G A +G +K+ AEQ AA + Sbjct: 188 YRVED-SGPDHRKEFTATVLVAGRALGEGNGTTKKEAEQKAAETAWRAL 235 >gi|315604391|ref|ZP_07879457.1| ribonuclease III [Actinomyces sp. oral taxon 180 str. F0310] gi|315314097|gb|EFU62148.1| ribonuclease III [Actinomyces sp. oral taxon 180 str. F0310] Length = 241 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 96/210 (45%), Gaps = 7/210 (3%) Query: 20 RSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 +LL+ AL H S ++ + ERLEFLGD +L ++I+ L+ + E +LS + Sbjct: 28 PTLLQLALVHRSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRAA 87 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 VS + + AR + L F+ + SI +D E+LI A YL G+E A Sbjct: 88 TVSQQPLAAAARRIGLGDFVFLGKGESTHGGRDKDSILSDTFEALIGATYLTSGLEEARR 147 Query: 138 FVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + + +D KT L E++ +K Y+V GPDH FT + Sbjct: 148 VILARLGFLLADAPSRGQHQDWKTLLVEYSQSKGLGEVSYEVEGE-GPDHQRVFTARAYV 206 Query: 196 SG--LAPAQGMDCSKRAAEQVAAAEVLKRE 223 S A +G SK+ AE AA + +KR Sbjct: 207 SESSEALGEGRASSKKHAENAAAQDAMKRL 236 >gi|308177247|ref|YP_003916653.1| ribonuclease III [Arthrobacter arilaitensis Re117] gi|307744710|emb|CBT75682.1| ribonuclease III [Arthrobacter arilaitensis Re117] Length = 225 Score = 218 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 6/212 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 KR+G + A TH S S+ + + ERLEFLGD ILG ++ L+ F E Sbjct: 2 KRLGINI-DSETFRLAFTHRSYSYEHGGIPTNERLEFLGDSILGFCVAEYLYASFPDLPE 60 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ R ++VS + +AR+L++ + + + + +SI AD +E+++ A YL Sbjct: 61 GDLAKRRAAIVSTRALAMIARDLEVGEHLFLGRGESQSNGANKSSILADTMEAILGATYL 120 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 G++ A V ++ D KT +QE ++ Y+VT SGPDH Sbjct: 121 VQGMDEARALVLRFVTPLLEDPRLLGATTDWKTVIQEEVASQKLGEMCYEVTG-SGPDHA 179 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 + + I + +G SK+ AEQ AA Sbjct: 180 RTYVAKLCIGAKSYGEGHGPSKKEAEQEAAHN 211 >gi|312127786|ref|YP_003992660.1| ribonuclease iii [Caldicellulosiruptor hydrothermalis 108] gi|311777805|gb|ADQ07291.1| ribonuclease III [Caldicellulosiruptor hydrothermalis 108] Length = 222 Score = 218 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 114/223 (51%), Gaps = 11/223 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +EK +GY F +++LL ALTH S +HS + YERLEFLGD L L++S LF +F Sbjct: 2 EEIEKALGYKFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELVVSKYLFVNFPDL 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ ++V ++T S+VA +L+L + I + + SI ADV+E++ A+ Sbjct: 62 SEGELTNIRAAVVCSQTLSEVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY---KVTFRS 181 +++ G + + K K +GK D KT+LQE + Y ++ + Sbjct: 122 FIESGFDKLEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIVQREGKKKIVYKDCEIIEK- 180 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + + G ++G SK+ A+Q AA + L G Sbjct: 181 -----KYFKSELFVEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218 >gi|225873636|ref|YP_002755095.1| ribonuclease III [Acidobacterium capsulatum ATCC 51196] gi|225793249|gb|ACO33339.1| ribonuclease III [Acidobacterium capsulatum ATCC 51196] Length = 302 Score = 218 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 80/264 (30%), Positives = 128/264 (48%), Gaps = 47/264 (17%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ-------------------------ESYE 41 + LE +GY F ++ LL +ALTHSS+++ E E Sbjct: 18 AELEAALGYTFQDKGLLARALTHSSLAYEQTAQTATPAAARATGKSSEARTRRSPLEDNE 77 Query: 42 RLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101 +LEFLGD +LGL+++ L+ EG+L+ ++LVS + QVA L L +++R+ Sbjct: 78 QLEFLGDAVLGLIVAEALYRAHPEMSEGQLTRLRSALVSRKHMGQVAHRLHLGTYLRMGR 137 Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDG---------GIEVAGTFVDKYWKQRALKS-- 150 + ++ A+ E+LIAA+YLD + A ++++ + +L S Sbjct: 138 GEERSGGRKKPALLANAAEALIAAVYLDAAGITGPCETALTAARAIIERHVIEPSLPSLL 197 Query: 151 -----GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL------A 199 G D K+ LQE+ ++ PEY VT +SGPDH RF V V + G A Sbjct: 198 QEASRGTSIGDHKSALQEFLQSEHRGQPEYVVTGQSGPDHHKRFLVEVRLPGKAGAPGTA 257 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 A+G+ +K+ AEQ AA L++ Sbjct: 258 LARGIGGTKKHAEQEAARRALRKL 281 >gi|118587506|ref|ZP_01544930.1| ribonuclease III [Oenococcus oeni ATCC BAA-1163] gi|118431957|gb|EAV38699.1| ribonuclease III [Oenococcus oeni ATCC BAA-1163] Length = 243 Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 9/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M+ ++ +++ G FAN+ LL +A T + + + E Y+RLEFLGD ++ L+++ Sbjct: 13 MNNIQ-KGIKEDFGIEFANQDLLLEAFTQGNYLNEHPEEKGRDYQRLEFLGDSVMQLIVA 71 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + +EG+L+ ++V +++ S AR +IR+ S+ Sbjct: 72 DYLFTRYPDWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELSGARNRDSLLE 131 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ I ALY D G + TF++K + A+ G F D K++LQE V E Sbjct: 132 DIWEAFIGALYKDQGAKAVFTFLNKAFFP-AIDEGFFEEFIDYKSKLQELLQKAGSVDIE 190 Query: 175 YKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YKV D F V V ++ A G S + AE+ AA + + Sbjct: 191 YKVENEDLSDPQKPHFEVTVFVNDKAIGSGSGRSIKIAEKRAAKKAYQ 238 >gi|296171390|ref|ZP_06852723.1| ribonuclease III [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894165|gb|EFG73924.1| ribonuclease III [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 237 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 67/208 (32%), Positives = 101/208 (48%), Gaps = 9/208 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 L + +G + LL ALTH S ++ + + ERLEFLGD +LGL I+ L++ Sbjct: 5 EDLLEALGVELPD-ELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDELYHRHP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG+L+ S+V+ + + VAR+L L + + + +SI AD +ES Sbjct: 64 DRSEGDLAKLRASVVNTQALADVARKLSADGLGVHLFLGRGEANTGGADKSSILADGMES 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A+YL GI+ A + + + + D KT LQE A+ P Y VT Sbjct: 124 LLGAIYLQHGIDTAREVILRLFGGLLDAAPTLGAGLDWKTSLQELTAARGMGAPSYVVTS 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +GPDHD FT VV + G+ S Sbjct: 184 -TGPDHDKEFTAVVVVMDTEYGSGVGRS 210 >gi|167563529|ref|ZP_02356445.1| ribonuclease III [Burkholderia oklahomensis EO147] Length = 293 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 6/199 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F EG Sbjct: 2 ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A++LD Sbjct: 59 DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118 Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG E A + + + + +DAKT LQE+ P Y V G H+ Sbjct: 119 GGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178 Query: 188 RFTVVVEISGL-APAQGMD 205 +F V + L G Sbjct: 179 QFEVECTVPKLDVKVSGSG 197 >gi|226199978|ref|ZP_03795528.1| ribonuclease III [Burkholderia pseudomallei Pakistan 9] gi|225928034|gb|EEH24071.1| ribonuclease III [Burkholderia pseudomallei Pakistan 9] Length = 462 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 6/199 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F EG Sbjct: 2 ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFGKLDEG 58 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A++LD Sbjct: 59 DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118 Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG E A + + + + +DAKT LQE+ P Y V G H+ Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178 Query: 188 RFTVVVEISGLAP-AQGMD 205 +F V + L G Sbjct: 179 QFEVECTVPKLDIKVSGSG 197 >gi|254374854|ref|ZP_04990335.1| ribonuclease III [Francisella novicida GA99-3548] gi|151572573|gb|EDN38227.1| ribonuclease III [Francisella novicida GA99-3548] Length = 230 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 9/221 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS +GY F + +LL +ALTH S +++YERLEFLGD +L +I+ +L+ F Sbjct: 4 EYSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFT 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS + LV T +Q+A L + +I + + I DV E++I Sbjct: 61 DLAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGASE--QGGHKREKILEDVFEAVIG 118 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD + K+++ L +D+K++LQE PEY + Sbjct: 119 AIYLDSDFATVKKVILKWYQPIILSINLDTIKVKDSKSKLQEILLQNALSLPEYSIEAID 178 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G DH+ +FTVV L + S++ AEQ AA ++++ Sbjct: 179 GKDHEQQFTVVAMSKDLNLRVKAQGTSRKKAEQKAAEKMIE 219 >gi|167720558|ref|ZP_02403794.1| ribonuclease III [Burkholderia pseudomallei DM98] Length = 438 Score = 217 bits (554), Expect = 9e-55, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 6/199 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F EG Sbjct: 2 ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFGKLDEG 58 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A++LD Sbjct: 59 DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118 Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG E A + + + + +DAKT LQE+ P Y V G H+ Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178 Query: 188 RFTVVVEISGLAP-AQGMD 205 +F V + L G Sbjct: 179 QFEVECTVPKLDIKVSGSG 197 >gi|34497521|ref|NP_901736.1| ribonuclease III [Chromobacterium violaceum ATCC 12472] gi|81655793|sp|Q7NWC4|RNC_CHRVO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|34103376|gb|AAQ59738.1| ribonuclease III [Chromobacterium violaceum ATCC 12472] Length = 236 Score = 217 bits (554), Expect = 9e-55, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 R+ L + + YAF LL +ALTH S S + ER EF+GD IL ++ +L++ F Sbjct: 7 RFRRLSQALDYAFQKPELLRQALTHRSYS---SANNERFEFVGDSILNYTVARMLYDQFP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGELS +LV+ T +++A EL L ++ + K SI AD +E+ A Sbjct: 64 QLTEGELSRLRANLVNQNTLAEIAHELKLGDYLYLGEGELKSGGFNRPSILADALEATFA 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+ D A V + + QR + + + +DAKT LQE A+ P+Y++ +SG Sbjct: 124 AVSFDADFAAAEQVVRRLYNQRVATIDTTRQAKDAKTRLQEALQARKLALPKYRILSQSG 183 Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCS 207 H+ F V ++ +A + G S Sbjct: 184 EAHEQWFKVECDLGEMALISTGDGGS 209 >gi|309810296|ref|ZP_07704134.1| ribonuclease III [Dermacoccus sp. Ellin185] gi|308435724|gb|EFP59518.1| ribonuclease III [Dermacoccus sp. Ellin185] Length = 272 Score = 217 bits (554), Expect = 9e-55, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + SLL +ALTH S ++ ER EFLGD +LGL+++ L+ A EG L+ + Sbjct: 34 DESLLRRALTHRSFAYENGGIPHNERQEFLGDAVLGLVVTETLYTDQPDAPEGHLAKQRA 93 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 ++V++ ++VAR L+L ++ + SI AD E++I ++L GGIE Sbjct: 94 AVVNSRALAEVARGLELGEYLLLGRGELATGGRDKDSILADTTEAVIGTVFLSGGIEAGR 153 Query: 137 TFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 V +S D KT LQE A P Y V GPDHD FT V Sbjct: 154 RIVHHLIDPLMNRSSTMGAALDWKTSLQEATAAAGLGAPTYVVEGE-GPDHDKVFTATVL 212 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEV 219 + G G +K++AE +AA Sbjct: 213 VDGRTLGAGTGRNKKSAEMIAAENA 237 >gi|62184964|ref|YP_219749.1| ribonuclease III [Chlamydophila abortus S26/3] gi|81312866|sp|Q5L6E3|RNC_CHLAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|62148031|emb|CAH63783.1| ribonuclease III [Chlamydophila abortus S26/3] Length = 237 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 4/224 (1%) Query: 1 MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIS 56 M+ + +E ++ + F LL ALTH S + E ERLEFLGD +L L+++ Sbjct: 1 MNNLINIKEVEAKLNFTFTQPKLLVTALTHPSYRNETATITEDSERLEFLGDAVLCLIVT 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F S EG LS +L++A +C Q L L ++ + R TS A Sbjct: 61 EHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLIGKGERIQNERGKTSAYA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 ++ E+++ A+YLDGG+ A + + K LQ+ P Y+ Sbjct: 121 NLFEAILGAVYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKHLRTLPVYQ 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P + + V ++ +G SK+ AE++AA + L Sbjct: 181 YEPWTSPQGASGYHIRVLVNHEVWGEGFALSKKEAEKLAAQQAL 224 >gi|167470281|ref|ZP_02334985.1| ribonuclease III [Yersinia pestis FV-1] Length = 195 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 65/196 (33%), Positives = 98/196 (50%), Gaps = 5/196 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKH---NERLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIHTIERLILEWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVE 194 G HD F Sbjct: 178 QVRGEAHDQEFISTAR 193 >gi|295111283|emb|CBL28033.1| ribonuclease III, bacterial [Synergistetes bacterium SGP1] Length = 251 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 5/219 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 + L+ +GY+F + LLE+AL H+S ++ + S ERLEFLGD +LG +++ L+ Sbjct: 27 DLAALQAALGYSFRDEGLLEEALCHASFANEHGLAVSNERLEFLGDSVLGFVVARALYRL 86 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + A+EG+L+ + LV + AREL+L I +R + + TS+ D VE+L Sbjct: 87 YPEAREGDLTQKRAELVCGRSLRDRARELNLPPLILHGHSVRDE--ALPTSMCEDAVEAL 144 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + A+ LDGG++ A + + + Q A + K+ LQ W A+ P Y++ +G Sbjct: 145 LGAVCLDGGVQAAEGVIGRLFLQEAEVRAETDVSPKSRLQTWLQARRIPLPTYELVSVTG 204 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P H P F V + ++G+ +++ AE AA VL+ Sbjct: 205 PSHAPSFRVRLRVNGVEH-TACGSTRKGAESDAAERVLE 242 >gi|294668882|ref|ZP_06733972.1| ribonuclease III [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309179|gb|EFE50422.1| ribonuclease III [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 233 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 65/217 (29%), Positives = 106/217 (48%), Gaps = 6/217 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +++++ Y F LL +ALTH S S + ER EF+GD IL I+ +L++ F Sbjct: 3 HIQQKLQYRFKQPELLTRALTHRSYSSRH---NERFEFVGDAILNYTIAKMLYDTFLDLP 59 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG LS +LV+ +T +++A EL + + + + K SI +D +E++ AA+ Sbjct: 60 EGRLSRLRANLVNQDTLAEIATELKVGDALLLGNGELKSGGFRRPSILSDAMEAMFAAVS 119 Query: 128 LDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D A V + +R + +DAKT LQE A+ P+Y++ + G + Sbjct: 120 FDTDFNAAEQVVRHLFARRVGSISFDNEGKDAKTMLQEALQARRLALPKYRIEHQEGEGY 179 Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 RFTV ++ L S+RAAEQ A + Sbjct: 180 TARFTVSCDLGELGFITTAEAHSRRAAEQQTAKTAFE 216 >gi|322420696|ref|YP_004199919.1| ribonuclease III [Geobacter sp. M18] gi|320127083|gb|ADW14643.1| ribonuclease III [Geobacter sp. M18] Length = 224 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 79/210 (37%), Positives = 120/210 (57%), Gaps = 2/210 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE ++GY F+NR LLE+ALTH + ++ + +RLEF GD +L L+S LL F Sbjct: 2 EKLEGKLGYRFSNRELLEEALTHRTYANEAGGKDNQRLEFFGDAVLDFLLSDLLLQRFPD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 ++EGEL+ +LV + +++A L+L + +R+ K S+ AD E+L+AA Sbjct: 62 SREGELTKMRAALVDEVSLARIAAGLELGAALRLGRGEEKGGGRQKRSLLADAFEALLAA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LYLDGG++ A V + ++ + RDAKTELQE A G P Y++ +GPD Sbjct: 122 LYLDGGVDTARRVVHELFEPLLCRPEILCGRDAKTELQERARLLRGKLPRYQLKQVTGPD 181 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 HD RFTV + + +G+ +K+ AEQ Sbjct: 182 HDRRFTVEIFLGSELMGEGVGRTKKEAEQD 211 >gi|110598670|ref|ZP_01386935.1| Ribonuclease III [Chlorobium ferrooxidans DSM 13031] gi|110339723|gb|EAT58233.1| Ribonuclease III [Chlorobium ferrooxidans DSM 13031] Length = 270 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 114/227 (50%), Gaps = 7/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLI 55 +SA + L + +G +N L + ALTH S+ H ES +RLEFLGD +LGLLI Sbjct: 31 LSAETIAYLRRLVGEPASNLLLYQTALTHRSVVHDPATQHLVESNQRLEFLGDSVLGLLI 90 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S LF F + EGELS + +V+ ++ + A ++LA ++ ++ + S Sbjct: 91 SDYLFRTFPGSAEGELSSNRSKIVNRKSLAGFAASMNLADYLLTGESADRNKITSSDSAL 150 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTP 173 AD ESL A+YLD GI A F+ K+ + + + K+ L E+ ++ P Sbjct: 151 ADAFESLTGAIYLDKGILAAENFIRKHVLEHENFRMIVEAEHNYKSRLIEYTQSRHLPMP 210 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y V G +H+ +FTV V S G K+ AEQ+AA E L Sbjct: 211 VYSVLEECGAEHEKQFTVGVSCSDRHLGSGTARRKKDAEQLAAKEAL 257 >gi|108798917|ref|YP_639114.1| ribonuclease III [Mycobacterium sp. MCS] gi|119868032|ref|YP_937984.1| ribonuclease III [Mycobacterium sp. KMS] gi|126434517|ref|YP_001070208.1| ribonuclease III [Mycobacterium sp. JLS] gi|108769336|gb|ABG08058.1| RNAse III [Mycobacterium sp. MCS] gi|119694121|gb|ABL91194.1| RNAse III [Mycobacterium sp. KMS] gi|126234317|gb|ABN97717.1| RNAse III [Mycobacterium sp. JLS] Length = 234 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 9/212 (4%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 L S L +G + LL ALTH S S+ + + ERLEFLGD +LGL I+ LF Sbjct: 2 TLDRSPLLAALGVTLPD-DLLTIALTHRSYSYEHGGLPTNERLEFLGDSVLGLTITEELF 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQAD 117 + EG+L+ S+V+ + V R+L L S++ + + +SI AD Sbjct: 61 HRHPDRSEGDLAKLRASIVNTGALADVGRKLSDDGLGSYLLLGKGEESSGGADKSSILAD 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEY 175 VESL+ A+Y+ G+ V + + + + D K+ LQE A+ P Y Sbjct: 121 GVESLLGAIYVQHGLTVTREVILRLFAGLLDTAPTLGAGLDWKSSLQELTAARGLGAPHY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 VT +GPDHD FT V ++ + +G+ + Sbjct: 181 VVTS-TGPDHDKEFTATVLVTDIEYGRGVGRT 211 >gi|158312991|ref|YP_001505499.1| ribonuclease III [Frankia sp. EAN1pec] gi|158108396|gb|ABW10593.1| Ribonuclease III [Frankia sp. EAN1pec] Length = 306 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL++ALTH S ++ + ERLEFLGD +LGL+++ LF EG+L+ + Sbjct: 23 DPELLDRALTHRSYAYENGGLPTNERLEFLGDAVLGLIVTAALFRRHPDLPEGQLAKQRA 82 Query: 77 SLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S+V+ + VAR + + ++ + SI AD +E++I A+YL ++ Sbjct: 83 SVVNMRALADVARRIGTAGIGPYLLLGRGEEATGGRDKPSILADTLEAVIGAVYLSNSLD 142 Query: 134 VAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 VA FV + + ++ D KT LQE P+Y VT +GPDH RFT Sbjct: 143 VASGFVHRLFDPLLDEAAGRGAGLDWKTSLQEQTALLGLGPPDYAVT-EAGPDHAKRFTA 201 Query: 192 VVEISGLAPAQGMDCSKRAAEQV 214 ++G +G SK+ AEQ Sbjct: 202 FARVAGEVLGEGEGGSKKEAEQR 224 >gi|54026155|ref|YP_120397.1| ribonuclease III [Nocardia farcinica IFM 10152] gi|81373706|sp|Q5YS08|RNC_NOCFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54017663|dbj|BAD59033.1| putative RNase III [Nocardia farcinica IFM 10152] Length = 240 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 109/226 (48%), Gaps = 9/226 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 +++L + +G LL ALTH S ++ + ERLEFLGD +LGL I+ L++ Sbjct: 13 DHASLLEALGVDVR-PDLLRLALTHRSYAYENGGLPTNERLEFLGDSVLGLSITERLYHE 71 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVAR---ELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 EGEL+ S+V+ ++VAR E L + + + SI AD + Sbjct: 72 HPDKSEGELAKLRASVVNMHALAEVARGLGEGGLGAHLLLGKGEELTGGRDKPSILADGM 131 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 ESL+ A++L GI+VA V + + + + D KT LQE + P Y+ Sbjct: 132 ESLLGAVHLQHGIDVARGVVLRLFADLLERGPRMGAGLDWKTSLQELTAERGLGVPSYE- 190 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GPDHD FT I G A QG+ SK+ AEQ AA + Sbjct: 191 ISSTGPDHDKEFTATTVIGGRAYGQGVGRSKKEAEQKAAGAAYQAL 236 >gi|327382635|gb|AEA54111.1| ribonuclease III [Lactobacillus casei LC2W] gi|327385829|gb|AEA57303.1| ribonuclease III [Lactobacillus casei BD-II] Length = 231 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 7/210 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 ++ S L +R G F + SLL++A THSS + ++E ERLEFLGD +L L +S Sbjct: 3 ASEFVSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSD 62 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ F EG+L+ + V S ++E +I++ K ++ D Sbjct: 63 YLYRKFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARKRLTLLED 122 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEY 175 + E+ ALYLD G + F + + + +G+F +D KT LQE V Y Sbjct: 123 LFEAFNGALYLDQGRDANIRFAQQIIFPK-IDAGEFSDDQDHKTALQEVLQQNGDVAIVY 181 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + GP H+ +F V VE+ G G Sbjct: 182 HLLDEQGPAHERQFHVDVEVDGRVLGTGFG 211 >gi|296115041|ref|ZP_06833683.1| ribonuclease III [Gluconacetobacter hansenii ATCC 23769] gi|295978378|gb|EFG85114.1| ribonuclease III [Gluconacetobacter hansenii ATCC 23769] Length = 255 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 113/223 (50%), Gaps = 17/223 (7%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----------------SYERLEF 45 + +E +GY F N +LL +ALTH S +H S ERLEF Sbjct: 18 PTAEFERIEAYVGYCFRNAALLHEALTHRSAAHQRSSAIGRRTRQSVARRGAGSNERLEF 77 Query: 46 LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 +GDR+LGLL++ L F +EG L R LVS + +A ++ L S + V+ + Sbjct: 78 IGDRVLGLLMAEWLLERFPDEQEGALGPRHAHLVSRAVLAHIAEDMALPSALDVAEHEAR 137 Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA 165 M ++ AD VE+++ A+YLDGG+E A FV + W + + +D KT LQEW Sbjct: 138 AGVRQMANVLADAVEAILGAIYLDGGLEPARAFVRRAWNNAIVAQARPPKDPKTALQEWV 197 Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 A+ P YKV GP H PRF + VE SG +G+ SK Sbjct: 198 LARGLPLPVYKVVSTDGPSHAPRFVISVEASGRR-GEGVAGSK 239 >gi|257066163|ref|YP_003152419.1| ribonuclease III [Anaerococcus prevotii DSM 20548] gi|256798043|gb|ACV28698.1| ribonuclease III [Anaerococcus prevotii DSM 20548] Length = 239 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 112/209 (53%), Gaps = 6/209 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFN 61 + E +IGY F ++ L++ A THSS ++ ++S ERLEFLGD IL +++S +LF Sbjct: 10 KIEEFENKIGYTFNDKDLIDVAFTHSSYTNEVKGKKKSNERLEFLGDSILDMIVSEVLFK 69 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H+ EG L+ + LV + ++ + ++ +F+ + R+ ++AD E+ Sbjct: 70 HYSMKPEGWLTKTRSRLVCTSSFAKACEKFEMTTFLNFGNGERQGGGELKKHVKADTFEA 129 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + AA+YLD + F+ + +K+ AL+ D KT+LQE+ +AK +Y + Sbjct: 130 VCAAIYLDSSYDNLFKFLKENYKEEALEIINDDSIFNDYKTKLQEYHNAKDRKILKYVLV 189 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 GP+H+ FT+ V++ A G+ + Sbjct: 190 KEEGPEHEKTFTMAVKLGNKVLAHGVGKN 218 >gi|160903376|ref|YP_001568957.1| ribonuclease III [Petrotoga mobilis SJ95] gi|160361020|gb|ABX32634.1| Ribonuclease III [Petrotoga mobilis SJ95] Length = 253 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 73/210 (34%), Positives = 105/210 (50%), Gaps = 9/210 (4%) Query: 21 SLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 S+L +AL H S + +S ERLEFLGD +L L+IS L+N++ EGE+S Sbjct: 33 SVLFEALCHKSYVFDNENIQRKLDSNERLEFLGDAVLELVISEFLYNNY-HLSEGEMSKA 91 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 + S ++VA +L L FI +S K SI +D +E+L A +YL G E Sbjct: 92 RAIIGSEIILAEVALKLRLDDFIFLSKGEDKQGGRTKKSILSDTMEALFACIYLSCGYEK 151 Query: 135 AGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 A ++ K K+ + G D KT+LQE K PEY + SGP H R+ V Sbjct: 152 AKKYIIKNMKEYIENAVEGNIFLDYKTKLQELTQEKTKKLPEYVLLSASGPSHMKRYKVA 211 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V++ G SK+ AEQ+AA ++ Sbjct: 212 VKLDDEILGIGEGFSKKFAEQLAAKIACEK 241 >gi|239631967|ref|ZP_04674998.1| ribonuclease 3 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066653|ref|YP_003788676.1| dsRNA-specific ribonuclease [Lactobacillus casei str. Zhang] gi|239526432|gb|EEQ65433.1| ribonuclease 3 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439060|gb|ADK18826.1| dsRNA-specific ribonuclease [Lactobacillus casei str. Zhang] Length = 231 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 7/210 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 ++ S L +R G F + SLL++A THSS + ++E ERLEFLGD +L L +S Sbjct: 3 ASEFVSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSD 62 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ F EG+L+ + V S ++E +I++ K ++ D Sbjct: 63 YLYRKFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARKRLTLLED 122 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEY 175 + E+ ALYLD G + F ++ + + +G+F +D KT LQE V Y Sbjct: 123 LFEAFNGALYLDQGRDANIRFAEQIIFPK-IDAGEFSADQDHKTALQEVLQQNGDVAIVY 181 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + GP H+ +F V VE+ G G Sbjct: 182 HLLDEQGPAHERQFHVDVEVDGRVLGTGFG 211 >gi|124265843|ref|YP_001019847.1| ribonuclease III [Methylibium petroleiphilum PM1] gi|124258618|gb|ABM93612.1| Ribonuclease III [Methylibium petroleiphilum PM1] Length = 248 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 77/205 (37%), Positives = 110/205 (53%), Gaps = 6/205 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +L+ R+G+ FA LL +ALTH S ++ ERLEFLGD +L IS LLF HF Sbjct: 23 FDSLQVRLGHRFAQVGLLGRALTHKSFG---ADNNERLEFLGDAVLSAAISGLLFEHFGQ 79 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 + EG+L+ LV E ++A +L L + +R+S + + SI AD VE+LIAA Sbjct: 80 SGEGDLTRVRAHLVREEMLHRLALDLGLPALLRLSEGEARSGGARRPSILADAVEALIAA 139 Query: 126 LYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGG A V++ + + + RD KTELQEW A+ P Y++ G Sbjct: 140 VYLDGGFASAQALVERLFTPLVASTAAEAWTRDPKTELQEWLQARRQPVPGYRIESTRGR 199 Query: 184 DHDPRFTVVVEISGLAP-AQGMDCS 207 H+ FTVV I + +G S Sbjct: 200 QHEQMFTVVCSIPSRSLEVRGEGRS 224 >gi|325529480|gb|EGD06389.1| ribonuclease III [Burkholderia sp. TJI49] Length = 279 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 6/199 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F EG Sbjct: 2 ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A++LD Sbjct: 59 DLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118 Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG E A + + + + +DAKT LQE+ P Y V G H+ Sbjct: 119 GGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178 Query: 188 RFTVVVEISGL-APAQGMD 205 +F V + L G Sbjct: 179 QFEVECTVPKLDVKVSGSG 197 >gi|312793340|ref|YP_004026263.1| ribonuclease iii [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180480|gb|ADQ40650.1| ribonuclease III [Caldicellulosiruptor kristjanssonii 177R1B] Length = 222 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 113/223 (50%), Gaps = 11/223 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+ +GY F +++LL ALTH S +HS + YER EFLGD L L +S LF HF Sbjct: 2 EEIERALGYTFKDKNLLRLALTHKSATHSNKNCYERFEFLGDAALELAVSKYLFVHFPEL 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ ++V ++T S+VA +L+L + I + + SI ADV+E++ A+ Sbjct: 62 SEGELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY---KVTFRS 181 +++ G ++ + K K +GK D KT+LQE + Y ++ + Sbjct: 122 FIESGFDIVEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIVQREGNKKIVYKDCEIIEK- 180 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + I G ++G SK+ A+Q AA + L G Sbjct: 181 -----KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218 >gi|325963729|ref|YP_004241635.1| RNAse III [Arthrobacter phenanthrenivorans Sphe3] gi|323469816|gb|ADX73501.1| RNAse III [Arthrobacter phenanthrenivorans Sphe3] Length = 242 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 98/207 (47%), Gaps = 6/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 L KR+G F + L ALTH S ++ + ERLEFLGD ILG ++ L+ Sbjct: 5 EELLKRLGV-FIDAGTLRLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDALYRDNP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ R +++VS + + R L + +I + + SI AD +E+LI Sbjct: 64 DLPEGDLAKRRSAVVSTRALAGIGRSLGIGEYIYLGQGEKLTQGKNKASILADTMEALIG 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A Y+ IE A V + + D KT +QE A ++ T Y V +G Sbjct: 124 ATYVSNDIETARQLVMRLIGPLLKDAAALGAGTDWKTSIQELAASRQLGTIHYAVDG-TG 182 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDH FT V+ + G A +G SK+ Sbjct: 183 PDHARTFTAVLHVGGTAYGKGSGHSKK 209 >gi|162147937|ref|YP_001602398.1| ribonuclease III [Gluconacetobacter diazotrophicus PAl 5] gi|209542555|ref|YP_002274784.1| Ribonuclease III [Gluconacetobacter diazotrophicus PAl 5] gi|161786514|emb|CAP56096.1| putative ribonuclease III [Gluconacetobacter diazotrophicus PAl 5] gi|209530232|gb|ACI50169.1| Ribonuclease III [Gluconacetobacter diazotrophicus PAl 5] Length = 249 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 75/220 (34%), Positives = 113/220 (51%), Gaps = 17/220 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----------------SYERLEFLGDR 49 +++E R+GY F LL +ALTH S +H S ERLEF+GDR Sbjct: 13 VASVEARVGYRFRRPDLLREALTHRSAAHQRNGGGARRSRQPAARRGAGSNERLEFIGDR 72 Query: 50 ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 +LGL+++ L F +EG L R LVS + +A ++L + V+ + Sbjct: 73 VLGLVMAEWLLERFPDEQEGALGPRHAHLVSRPVLAAIAGTMNLQQALDVAEHEARAGVR 132 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 + ++ AD VE+++ A+YLDGG+E A FV W + + + +D KT LQEW A+ Sbjct: 133 QVANVLADAVEAILGAIYLDGGLEPARRFVRAAWNEAIVAQAQPPKDPKTALQEWVLARG 192 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 P Y+ GP H PRF + V +G + A+G+ SKR Sbjct: 193 LPLPAYRTVQMDGPSHAPRFVIAVTAAGQS-AEGIAGSKR 231 >gi|330717913|ref|ZP_08312513.1| ribonuclease III [Leuconostoc fallax KCTC 3537] Length = 236 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 7/228 (3%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 MS + L + +F N +LL +ALT + + + + Y+RLEFLGD ++ + Sbjct: 1 MSVDSFKQYLNQTFAISFDNETLLLEALTQRNYLNEHPDETGRDYQRLEFLGDAVMQETV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + LF + EG+L+ ++V + + AR++ L IR+ + S+ Sbjct: 61 AEYLFRRYPKWHEGQLTEMRIAMVQTRSFAHFARQVRLNEAIRLGKGEEMNGARDRDSLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 D+ E+ I ALYLD G + F+D + D K+ LQE A V + Sbjct: 121 EDIWEAFIGALYLDQGADTVKRFLDATLFAAVDTDFFDHFIDFKSRLQEKLQANGPVDID 180 Query: 175 YKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y + D+ F V + A+G S + AE+ AA + L Sbjct: 181 YNTISETILADNSTCFEASVSLDDRELARGTGKSIKDAEKAAARKALN 228 >gi|118498035|ref|YP_899085.1| ribonuclease III [Francisella tularensis subsp. novicida U112] gi|194323260|ref|ZP_03057044.1| ribonuclease III [Francisella tularensis subsp. novicida FTE] gi|208779555|ref|ZP_03246900.1| ribonuclease III [Francisella novicida FTG] gi|254373391|ref|ZP_04988879.1| ribonuclease III [Francisella tularensis subsp. novicida GA99-3549] gi|189043316|sp|A0Q7W6|RNC_FRATN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|118423941|gb|ABK90331.1| ribonuclease III [Francisella novicida U112] gi|151571117|gb|EDN36771.1| ribonuclease III [Francisella novicida GA99-3549] gi|194322624|gb|EDX20104.1| ribonuclease III [Francisella tularensis subsp. novicida FTE] gi|208744516|gb|EDZ90815.1| ribonuclease III [Francisella novicida FTG] gi|332678757|gb|AEE87886.1| Ribonuclease III [Francisella cf. novicida Fx1] Length = 230 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 111/221 (50%), Gaps = 9/221 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS +GY F + +LL +ALTH S +++YERLEFLGD +L +I+ +L+ F Sbjct: 4 EYSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFT 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS + LV T +Q+A L + +I + + I DV E++I Sbjct: 61 DLAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGASE--QGGHKREKILEDVFEAVIG 118 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD + K+++ + + +D+K++LQE PEY + Sbjct: 119 AIYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 178 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G DH+ +FTVV L + S++ AEQ AA ++++ Sbjct: 179 GKDHEQQFTVVAMSKDLNLRVKAQGTSRKKAEQKAAEKMIE 219 >gi|116495089|ref|YP_806823.1| ribonuclease III [Lactobacillus casei ATCC 334] gi|191638593|ref|YP_001987759.1| ribonuclease III [Lactobacillus casei BL23] gi|227534896|ref|ZP_03964945.1| ribonuclease III [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|116105239|gb|ABJ70381.1| RNAse III [Lactobacillus casei ATCC 334] gi|190712895|emb|CAQ66901.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus casei BL23] gi|227187652|gb|EEI67719.1| ribonuclease III [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 231 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 7/210 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 ++ S L +R G F + SLL++A THSS + ++E ERLEFLGD +L L +S Sbjct: 3 ASEFVSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSD 62 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ F EG+L+ + V S ++E +I++ K ++ D Sbjct: 63 YLYRKFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARKRLTLLED 122 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEY 175 + E+ ALYLD G + F + + + +G+F +D KT LQE V Y Sbjct: 123 LFEAFNGALYLDQGRDANIRFAQQIIFPK-IDAGEFSADQDHKTALQEVLQQNGDVAIVY 181 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + GP H+ +F V VE+ G G Sbjct: 182 HLLDEQGPAHERQFHVDVEVDGRVLGTGFG 211 >gi|45359089|ref|NP_988646.1| ribonuclease III family protein [Methanococcus maripaludis S2] gi|45047964|emb|CAF31082.1| Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain [Methanococcus maripaludis S2] Length = 230 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + L ++ F + ++ ++A HSS + + E ERLE+LGD +L L+IS LF Sbjct: 4 NFEKLLSKLDIQFNDLNIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLDLIISEYLF 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ EGE+S V A++L +++ + +I +DV E Sbjct: 64 KK-ENLSEGEMSKLRAKYVCESALFTYAKKLKFNNYVLLGKGEINSKGYNKPAIVSDVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179 + IAA+YLD G++ FV ++ +S K D KT+LQE+ + Y Sbjct: 123 AFIAAIYLDQGLDSVKKFVYEFIIPIIEESSKELFIDYKTKLQEF-PELINKSINYVNLE 181 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G HD +F + V+ +G+ SK+ AE AA L + Sbjct: 182 ETGEAHDKKFVIAVKSGRKILGKGIGKSKKEAEMKAAKNALLKL 225 >gi|162449970|ref|YP_001612337.1| ribonuclease III [Sorangium cellulosum 'So ce 56'] gi|161160552|emb|CAN91857.1| ribonuclease III [Sorangium cellulosum 'So ce 56'] Length = 275 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 73/198 (36%), Positives = 104/198 (52%), Gaps = 7/198 (3%) Query: 19 NRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 + LE+ALTH S S+ + +RLEFLGD +LGL ++ LL F A+EGELS+ Sbjct: 17 DLPHLEEALTHPSFSNEQRGGRRVDNQRLEFLGDAVLGLCVTELLMERFPGAREGELSMM 76 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 ++LV+ + + AR ++L + +RV T++ AD E+L+AALYLD G E Sbjct: 77 RSALVNTDALAAWARGIELGAALRVGRGAEVAGERDQTNVLADATEALVAALYLDRGFES 136 Query: 135 AGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 A K + RDAK+ELQE A+ +P Y++ GPDHD F V Sbjct: 137 ARALSRKIAASPLAQLASGSLLGRDAKSELQERVQARGAASPRYRLMGTEGPDHDRAFLV 196 Query: 192 VVEISGLAPAQGMDCSKR 209 VE+ G G SK+ Sbjct: 197 AVEVDGQVIGTGRGRSKK 214 >gi|120403163|ref|YP_952992.1| ribonuclease III [Mycobacterium vanbaalenii PYR-1] gi|119955981|gb|ABM12986.1| RNAse III [Mycobacterium vanbaalenii PYR-1] Length = 235 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 63/194 (32%), Positives = 96/194 (49%), Gaps = 8/194 (4%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LL ALTH S S+ + ERLEFLGD +LGL I+ L++ EG+L+ S+ Sbjct: 19 ELLTIALTHRSYSYENGGVPTNERLEFLGDSVLGLTITEELYHRHPDRSEGDLAKLRASI 78 Query: 79 VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 V+ + + V R L L +++ + + +SI AD VESL+ A+YL+ G EVA Sbjct: 79 VNTQALADVGRNLTEHGLGAYLLLGKGEENSGGADKSSILADGVESLLGAIYLECGGEVA 138 Query: 136 GTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + + + + D K+ LQE ++ P Y VT +GPDHD FT V Sbjct: 139 REVILRLFSSLLDTAPTLGAGLDWKSSLQELTASRGLGAPTYVVTS-TGPDHDKEFTAAV 197 Query: 194 EISGLAPAQGMDCS 207 + +G+ + Sbjct: 198 MVGDSECGRGVGRT 211 >gi|15610062|ref|NP_217441.1| ribonuclease III [Mycobacterium tuberculosis H37Rv] gi|15842471|ref|NP_337508.1| ribonuclease III [Mycobacterium tuberculosis CDC1551] gi|31794102|ref|NP_856595.1| ribonuclease III [Mycobacterium bovis AF2122/97] gi|121638807|ref|YP_979031.1| ribonuclease III [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662771|ref|YP_001284294.1| ribonuclease III [Mycobacterium tuberculosis H37Ra] gi|148824115|ref|YP_001288869.1| ribonuclease III [Mycobacterium tuberculosis F11] gi|167969555|ref|ZP_02551832.1| ribonuclease III [Mycobacterium tuberculosis H37Ra] gi|215404901|ref|ZP_03417082.1| ribonuclease III [Mycobacterium tuberculosis 02_1987] gi|215412768|ref|ZP_03421480.1| ribonuclease III [Mycobacterium tuberculosis 94_M4241A] gi|215428370|ref|ZP_03426289.1| ribonuclease III [Mycobacterium tuberculosis T92] gi|215431873|ref|ZP_03429792.1| ribonuclease III [Mycobacterium tuberculosis EAS054] gi|215447189|ref|ZP_03433941.1| ribonuclease III [Mycobacterium tuberculosis T85] gi|218754678|ref|ZP_03533474.1| ribonuclease III [Mycobacterium tuberculosis GM 1503] gi|224991299|ref|YP_002645988.1| ribonuclease III [Mycobacterium bovis BCG str. Tokyo 172] gi|253797986|ref|YP_003030987.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 1435] gi|254365562|ref|ZP_04981607.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis str. Haarlem] gi|254551999|ref|ZP_05142446.1| ribonuclease III [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187945|ref|ZP_05765419.1| ribonuclease III [Mycobacterium tuberculosis CPHL_A] gi|260202061|ref|ZP_05769552.1| ribonuclease III [Mycobacterium tuberculosis T46] gi|260206245|ref|ZP_05773736.1| ribonuclease III [Mycobacterium tuberculosis K85] gi|289444482|ref|ZP_06434226.1| ribonuclease III [Mycobacterium tuberculosis T46] gi|289448592|ref|ZP_06438336.1| ribonuclease III rnc [Mycobacterium tuberculosis CPHL_A] gi|289553284|ref|ZP_06442494.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 605] gi|289575632|ref|ZP_06455859.1| ribonuclease III rnc [Mycobacterium tuberculosis K85] gi|289746725|ref|ZP_06506103.1| ribonuclease III [Mycobacterium tuberculosis 02_1987] gi|289751594|ref|ZP_06510972.1| ribonuclease III rnc [Mycobacterium tuberculosis T92] gi|289755039|ref|ZP_06514417.1| ribonuclease III [Mycobacterium tuberculosis EAS054] gi|289759048|ref|ZP_06518426.1| ribonuclease III [Mycobacterium tuberculosis T85] gi|289763102|ref|ZP_06522480.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis GM 1503] gi|297635545|ref|ZP_06953325.1| ribonuclease III [Mycobacterium tuberculosis KZN 4207] gi|297732544|ref|ZP_06961662.1| ribonuclease III [Mycobacterium tuberculosis KZN R506] gi|298526395|ref|ZP_07013804.1| ribonuclease III [Mycobacterium tuberculosis 94_M4241A] gi|306777216|ref|ZP_07415553.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu001] gi|306781126|ref|ZP_07419463.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu002] gi|306785762|ref|ZP_07424084.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu003] gi|306789802|ref|ZP_07428124.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu004] gi|306794615|ref|ZP_07432917.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu005] gi|306798860|ref|ZP_07437162.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu006] gi|306804705|ref|ZP_07441373.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu008] gi|306808897|ref|ZP_07445565.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu007] gi|306968996|ref|ZP_07481657.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu009] gi|306973333|ref|ZP_07485994.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu010] gi|307081039|ref|ZP_07490209.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu011] gi|307085639|ref|ZP_07494752.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu012] gi|313659876|ref|ZP_07816756.1| ribonuclease III [Mycobacterium tuberculosis KZN V2475] gi|54039242|sp|P66667|RNC_MYCBO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54041614|sp|P66666|RNC_MYCTU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|1405961|emb|CAA98974.1| PROBABLE RIBONUCLEASE III RNC (RNASE III) [Mycobacterium tuberculosis H37Rv] gi|13882776|gb|AAK47322.1| ribonuclease III [Mycobacterium tuberculosis CDC1551] gi|31619697|emb|CAD96637.1| PROBABLE RIBONUCLEASE III RNC (RNASE III) [Mycobacterium bovis AF2122/97] gi|121494455|emb|CAL72936.1| Probable ribonuclease III rnc (rnase III) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151075|gb|EBA43120.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis str. Haarlem] gi|148506923|gb|ABQ74732.1| ribonuclease III [Mycobacterium tuberculosis H37Ra] gi|148722642|gb|ABR07267.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis F11] gi|224774414|dbj|BAH27220.1| ribonuclease III [Mycobacterium bovis BCG str. Tokyo 172] gi|253319489|gb|ACT24092.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 1435] gi|289417401|gb|EFD14641.1| ribonuclease III [Mycobacterium tuberculosis T46] gi|289421550|gb|EFD18751.1| ribonuclease III rnc [Mycobacterium tuberculosis CPHL_A] gi|289437916|gb|EFD20409.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 605] gi|289540063|gb|EFD44641.1| ribonuclease III rnc [Mycobacterium tuberculosis K85] gi|289687253|gb|EFD54741.1| ribonuclease III [Mycobacterium tuberculosis 02_1987] gi|289692181|gb|EFD59610.1| ribonuclease III rnc [Mycobacterium tuberculosis T92] gi|289695626|gb|EFD63055.1| ribonuclease III [Mycobacterium tuberculosis EAS054] gi|289710608|gb|EFD74624.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis GM 1503] gi|289714612|gb|EFD78624.1| ribonuclease III [Mycobacterium tuberculosis T85] gi|298496189|gb|EFI31483.1| ribonuclease III [Mycobacterium tuberculosis 94_M4241A] gi|308214363|gb|EFO73762.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu001] gi|308326021|gb|EFP14872.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu002] gi|308329542|gb|EFP18393.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu003] gi|308333690|gb|EFP22541.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu004] gi|308337033|gb|EFP25884.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu005] gi|308340847|gb|EFP29698.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu006] gi|308344741|gb|EFP33592.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu007] gi|308348661|gb|EFP37512.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu008] gi|308353417|gb|EFP42268.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu009] gi|308357236|gb|EFP46087.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu010] gi|308361245|gb|EFP50096.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu011] gi|308364828|gb|EFP53679.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu012] gi|323718456|gb|EGB27628.1| ribonuclease III rnc [Mycobacterium tuberculosis CDC1551A] gi|326904540|gb|EGE51473.1| ribonuclease III rnc [Mycobacterium tuberculosis W-148] gi|328457760|gb|AEB03183.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 4207] Length = 240 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 98/206 (47%), Gaps = 9/206 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L +G + LL ALTH S ++ + ERLEFLGD +LGL I+ LF+ Sbjct: 8 LLDALGVDLPD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDR 66 Query: 67 KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ S+V+ + + VAR L L + + + +SI AD +ESL+ Sbjct: 67 SEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLL 126 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YL G+E A + + + + D KT LQE A+ P Y VT + Sbjct: 127 GAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTS-T 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCS 207 GPDHD FT VV + G+ S Sbjct: 186 GPDHDKEFTAVVVVMDSEYGSGVGRS 211 >gi|312622598|ref|YP_004024211.1| ribonuclease iii [Caldicellulosiruptor kronotskyensis 2002] gi|312203065|gb|ADQ46392.1| ribonuclease III [Caldicellulosiruptor kronotskyensis 2002] Length = 222 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 114/223 (51%), Gaps = 11/223 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +EK +GY F +++LL ALTH S +HS + YERLEFLGD L L +S LF HF Sbjct: 2 EEIEKALGYKFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPEL 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ ++V ++T S++A +L+L + I + + SI ADVVE++ A+ Sbjct: 62 SEGELTNIRAAVVCSQTLSKIAEKLNLKNHIIFGKREKMEKFHENKSILADVVEAIFGAI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPE---YKVTFRS 181 +++ G E + K K +GK D KT+LQE+ + Y++ + Sbjct: 122 FIESGFEKLEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEFVQKEGQKKIVYKDYEIIEK- 180 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + I G ++G SK+ A+Q AA + L G Sbjct: 181 -----KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218 >gi|71042598|pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii From Mycobacterium Tuberculosis Length = 242 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 98/206 (47%), Gaps = 9/206 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L +G + LL ALTH S ++ + ERLEFLGD +LGL I+ LF+ Sbjct: 10 LLDALGVDLPD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDR 68 Query: 67 KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ S+V+ + + VAR L L + + + +SI AD +ESL+ Sbjct: 69 SEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLL 128 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YL G+E A + + + + D KT LQE A+ P Y VT + Sbjct: 129 GAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTS-T 187 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCS 207 GPDHD FT VV + G+ S Sbjct: 188 GPDHDKEFTAVVVVMDSEYGSGVGRS 213 >gi|222529151|ref|YP_002573033.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725] gi|222455998|gb|ACM60260.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725] Length = 222 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 114/223 (51%), Gaps = 11/223 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +EK +GY F +++LL ALTH S +HS + YERLEFLGD L L++S LF HF Sbjct: 2 EEIEKALGYKFMDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELVVSKYLFVHFPEL 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ ++V ++T S++A +L+L + I + + SI DVVE++ A+ Sbjct: 62 SEGELTNIRAAVVCSQTLSKIAEKLNLKNHIIFGKREKMEKFHENKSILTDVVEAIFGAI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPE---YKVTFRS 181 +++ G E + K K +GK D KT+LQE+ K Y++ + Sbjct: 122 FIESGFEKLEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEFVQKKGQKKIVYKDYEIIEK- 180 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + I G ++G SK+ A+Q AA + L G Sbjct: 181 -----KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218 >gi|4378851|gb|AAD19719.1| ribonuclease III [Zymomonas mobilis subsp. mobilis ZM4] Length = 222 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 74/191 (38%), Positives = 112/191 (58%), Gaps = 3/191 (1%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 + +L +A+TH S +S Y+RLEFLGDR+LGL+I+ L++ F EG+LS R NS Sbjct: 18 KDPALFLRAMTHPSHGNS---DYQRLEFLGDRVLGLVIANWLYDLFPREPEGKLSRRLNS 74 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 LVS +C+ +AR + L ++R+ R D + ++ DV+E++I A++L+ GIE AG Sbjct: 75 LVSGASCASIARIVGLPQWLRLGKQARDDGAAASDNVLGDVMEAMIGAIFLESGIEAAGK 134 Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + KYW + K+ LQEWA A P Y++ R+GP H+P FT+ V I+G Sbjct: 135 LIHKYWAPLVTGQESAPKHPKSALQEWAAAHNRRPPVYEIVSRTGPQHNPCFTIQVSIAG 194 Query: 198 LAPAQGMDCSK 208 + A SK Sbjct: 195 VGEASAEGSSK 205 >gi|113475790|ref|YP_721851.1| RNAse III [Trichodesmium erythraeum IMS101] gi|110166838|gb|ABG51378.1| RNAse III [Trichodesmium erythraeum IMS101] Length = 233 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 108/226 (47%), Gaps = 16/226 (7%) Query: 16 AFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFD---SAKEG 69 F N+ LL++ALTH S + +E E LEF+GD +LG L+ LL+ + + K Sbjct: 7 EFKNQKLLQQALTHRSYLNENYGDEEDNESLEFIGDALLGFLVGELLYRRYKEEHNLKPK 66 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 EL+ + LV + ++ A +L + + +R+ KD ++ +D E++I A +LD Sbjct: 67 ELTRIRSLLVDEKQLAKFAVQLGIGAKMRLGKGAEKDGGRKNPALLSDTFEAIIGAYFLD 126 Query: 130 GGIEVAGTFVDKYWKQRALK----------SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + F+ + ++ A K D K + Q+WA AKFG P Y+ Sbjct: 127 SNLTKVKPFIKRLFEPVADNIILPNYGDNSQPKDLVDTKGKFQQWALAKFGENPRYESNN 186 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G DH FT V + G G K+ AE+ AA + LK+ G+ Sbjct: 187 GEGLDHAKIFTAEVRVRGKLYGVGKGNRKQEAEKSAAEKALKKVGL 232 >gi|149186754|ref|ZP_01865065.1| ribonuclease III [Erythrobacter sp. SD-21] gi|148829662|gb|EDL48102.1| ribonuclease III [Erythrobacter sp. SD-21] Length = 223 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 126/226 (55%), Gaps = 5/226 (2%) Query: 1 MSALRYSTLE--KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 MSAL T E ++ G+ N +L + ALTH S+ ++ YERLEFLGDR+LGL I+ Sbjct: 1 MSALEPDTREWLEKTGFTVNNEALWQAALTHGSMGE--KDDYERLEFLGDRVLGLSIAHW 58 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ A EG+L+ R N++VS E C+ VAR ++L+ +R+S R D +I DV Sbjct: 59 LYEQ-SDAPEGKLAQRLNAIVSREMCAIVARGIELSEHMRISKQARADGGKDSDNILGDV 117 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +E+L+ A +LD G + + V W+ + K+ LQEWA PEY+V Sbjct: 118 MEALLGAQFLDNGFKKSRELVHVLWRPALESGAGESKHPKSALQEWAAGNRRKPPEYEVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 RSGPDH +FTV V + + A SK AE+ AA + +++ G Sbjct: 178 ERSGPDHAAQFTVKVSVHKVGEATATAGSKGEAERAAAKKFMEKFG 223 >gi|84498322|ref|ZP_00997119.1| ribonuclease III [Janibacter sp. HTCC2649] gi|84381822|gb|EAP97705.1| ribonuclease III [Janibacter sp. HTCC2649] Length = 249 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 87/196 (44%), Gaps = 5/196 (2%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + +LL +ALTH S ++ ERLEFLGD +LGL+++ L+ EG+L+ Sbjct: 25 DVALLGRALTHRSYAYEAGGIPHNERLEFLGDSVLGLVVTDSLYVTHPDLTEGQLAKLRA 84 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 ++V+ + V R L L ++ + SI AD VE++I A Y G+ AG Sbjct: 85 AVVNMRALAAVGRTLGLGDYLHLGRGEESTGGRDKDSILADTVEAVIGATYCSAGLVAAG 144 Query: 137 TFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 V S D KT LQE EY V GP+H F+ V Sbjct: 145 DLVHHLLDPLMASSATLGAGLDWKTSLQEICALHSAGPVEY-VLEEDGPEHSKTFSARVL 203 Query: 195 ISGLAPAQGMDCSKRA 210 + G+ G+ +K+ Sbjct: 204 VGGVEHGSGVGRTKKD 219 >gi|116490531|ref|YP_810075.1| dsRNA-specific ribonuclease [Oenococcus oeni PSU-1] gi|290889932|ref|ZP_06553019.1| hypothetical protein AWRIB429_0409 [Oenococcus oeni AWRIB429] gi|122277282|sp|Q04GL2|RNC_OENOB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116091256|gb|ABJ56410.1| RNAse III [Oenococcus oeni PSU-1] gi|290480542|gb|EFD89179.1| hypothetical protein AWRIB429_0409 [Oenococcus oeni AWRIB429] Length = 231 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 111/228 (48%), Gaps = 9/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M+ ++ +++ G FAN+ LL +A T + + + E Y+RLEFLGD ++ L+++ Sbjct: 1 MNNIQ-KGIKEDFGIEFANQDLLLEAFTQGNYLNEHPEEKGRDYQRLEFLGDSVMQLIVA 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + + +EG+L+ ++V +++ S AR +IR+ S+ Sbjct: 60 DYLFTRYPAWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELSGARNRDSLLE 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D+ E+ I ALY D G + TF++K + A+ G F D K++LQE V E Sbjct: 120 DIWEAFIGALYKDQGAKAVFTFLNKAFFP-AIDEGFFEEFIDYKSKLQELLQKAGSVDIE 178 Query: 175 YKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YKV D F V V ++ A G S + AE+ AA + + Sbjct: 179 YKVENEDLSDPQKPHFEVTVFVNDKAIGSGSGRSIKIAEKRAAKKAYQ 226 >gi|221633356|ref|YP_002522581.1| ribonuclease III [Thermomicrobium roseum DSM 5159] gi|221156675|gb|ACM05802.1| ribonuclease III [Thermomicrobium roseum DSM 5159] Length = 252 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 68/209 (32%), Positives = 94/209 (44%), Gaps = 11/209 (5%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQES--------YERLEFLGDRILGLLISTLLFNH 62 + +G AF LL +ALTH S + S ERLEFLGD +L LL+S L+ Sbjct: 23 EALGIAFRRPDLLRQALTHLSYVYERSRSTQAAVEEANERLEFLGDAVLELLVSEFLYRR 82 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS-FMTSIQADVVES 121 F +A EGEL+ +LV T ++ AR L F+ + I A E+ Sbjct: 83 FPTASEGELTAYRAALVRTPTLARWARRFRLDEFLYLGRSEVPRPGRPVRERILAGAFEA 142 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++ ALYLD GI V F+ + + A L + + K LQE + +TP Y+ Sbjct: 143 VLGALYLDRGIRVVRRFLHRLLLEEAEGLIAIGQNENYKGRLQELIQDRLRITPVYRTIA 202 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 +GP H FT V I G SK Sbjct: 203 VTGPAHQRTFTAEVLIGERPYGVGHGPSK 231 >gi|163840519|ref|YP_001624924.1| ribonuclease III [Renibacterium salmoninarum ATCC 33209] gi|162953995|gb|ABY23510.1| ribonuclease III [Renibacterium salmoninarum ATCC 33209] Length = 273 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 74/216 (34%), Positives = 105/216 (48%), Gaps = 6/216 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + L KR+G + L ALTH S ++ + ERLEFLGD +LGL ++ L+ Sbjct: 23 AELLKRLGVDI-DAGTLRLALTHRSFAYENGGIPTNERLEFLGDSVLGLSVTDALYRDNP 81 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ R +++VS + VAREL + FI + SI AD +E+L Sbjct: 82 GLAEGELAKRRSAVVSTRALAGVARELGVGEFILLGQGELLTDGKNKASILADTMEALFG 141 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A Y+ IE A V + +G F D KT +QE A + Y+VT + G Sbjct: 142 AAYICNDIETARQMVMRLVGPLLADAGNFGAATDWKTNIQEHAANRQLGPVRYEVTGQ-G 200 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 PDH + ++ I G + G SK+ AEQ AAA Sbjct: 201 PDHARTYQALLWIGGTSYQSGRGHSKKEAEQDAAAN 236 >gi|289547872|ref|YP_003472860.1| ribonuclease III [Thermocrinis albus DSM 14484] gi|289181489|gb|ADC88733.1| ribonuclease III [Thermocrinis albus DSM 14484] Length = 237 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 78/218 (35%), Positives = 123/218 (56%), Gaps = 11/218 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +EK +GY+F + SLLE+ALTH S++ + SYE LEFLGD ++ L + LL +F ++E Sbjct: 12 IEKVLGYSFRDPSLLEEALTHRSVA-VGRRSYEVLEFLGDALINLFVVDLLLQNFPQSRE 70 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L++ VS + SQ+++EL L S I++ + + +SI ADV E+L A+Y+ Sbjct: 71 GQLAIMKAFFVSEDFLSQLSQELGLESLIKM----ERRRKNISSSILADVFEALWGAIYM 126 Query: 129 DGG--IEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 D G + K + +R L K G +R+D KT LQE + P Y++ GP Sbjct: 127 DTGRDLNTTRDLFFKNYGERILQVVKEGSYRKDYKTLLQELTQHLWKTRPTYRLIGTEGP 186 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 H+ F V ++ G A G SK+ AEQ +A ++ + Sbjct: 187 HHNRIFEVECQV-GSYRAVGKGKSKKEAEQESAKKLYE 223 >gi|237750847|ref|ZP_04581327.1| ribonuclease III [Helicobacter bilis ATCC 43879] gi|229373292|gb|EEO23683.1| ribonuclease III [Helicobacter bilis ATCC 43879] Length = 228 Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 3/200 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+++ Y F N+ L +AL H S Y + ERLEFLGD +L L++ LF F E Sbjct: 12 LEQKLNYTFKNKKKLAEALAHKSFKKPY--NNERLEFLGDAVLDLVVGEYLFETFTQKNE 69 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS SLV+ + ++A+ ++L ++ +S+ + SI ++ E+++A +YL Sbjct: 70 GSLSKMRASLVNEASFCKLAQSINLGEYLNLSTSEINNGGRLKASILSNAFEAIMAVIYL 129 Query: 129 DGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 + G++ + D K+ LQE+ +FG P Y++ + GPDH Sbjct: 130 ESGLDSVKRVFYPILHNEFRINEELLTSDYKSSLQEYTQERFGCIPSYEMLSQEGPDHKK 189 Query: 188 RFTVVVEISGLAPAQGMDCS 207 FT+ V+I A S Sbjct: 190 IFTMQVKIQNKIYASANGVS 209 >gi|320093928|ref|ZP_08025763.1| ribonuclease III [Actinomyces sp. oral taxon 178 str. F0338] gi|319979140|gb|EFW10648.1| ribonuclease III [Actinomyces sp. oral taxon 178 str. F0338] Length = 239 Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 93/208 (44%), Gaps = 7/208 (3%) Query: 19 NRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + +LL AL H S ++ + ERLEFLGD +L ++I+ LF+ + E +LS Sbjct: 27 DGALLSLALVHRSYANEAGGIANNERLEFLGDSVLSVVIAERLFHDYPDVAESDLSRMRA 86 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + VS + AR + L ++ + SI +D E+LI A YL G++ A Sbjct: 87 ATVSQAPLAAAARRIGLGDYVYLGKGESLHGGRDKDSILSDTFEALIGATYLTHGLQAAR 146 Query: 137 TFVDKY--WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 V + + + +D KT L E++ Y+V GPDH FT Sbjct: 147 RVVLERLSFLLEDAQERGHHQDWKTLLVEYSQEHGLGEVSYEVEGE-GPDHRRVFTARAF 205 Query: 195 ISGL--APAQGMDCSKRAAEQVAAAEVL 220 I+G+ G SK+ AE AA + Sbjct: 206 IAGIDGPVGSGRATSKKHAENAAAQNAM 233 >gi|170079136|ref|YP_001735774.1| ribonuclease III [Synechococcus sp. PCC 7002] gi|169886805|gb|ACB00519.1| ribonuclease III [Synechococcus sp. PCC 7002] Length = 258 Score = 214 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 66/197 (33%), Positives = 96/197 (48%), Gaps = 9/197 (4%) Query: 16 AFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F LL +ALTH S ++ E ERLEFLGD +L ++ LL+ + +EGELS Sbjct: 6 PFQRSPLLLQALTHRSFANEQPETIQDNERLEFLGDAVLKFIMGKLLYERYPDFQEGELS 65 Query: 73 VRFNSL-VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 SL + ++ A+ L L +R+ K+ I ++ E+++ A +LD G Sbjct: 66 RLRASLENNRHQLAEFAQVLGLDQILRLGKGAEKEGARQNPEILSNTFEAVVGAYFLDAG 125 Query: 132 IEVAGTFVDKYWKQRALK-----SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 IE A FV+ A + S ++ K +LQEWA A G P+YK SG DH Sbjct: 126 IEAAIAFVETLVIPVADRLVQQPSDPLAQNFKGQLQEWALANHGEIPKYKTLNESGADHA 185 Query: 187 PRFTVVVEISGLAPAQG 203 FTV V + G +G Sbjct: 186 KTFTVAVYLQGQEWGRG 202 >gi|291299631|ref|YP_003510909.1| ribonuclease III [Stackebrandtia nassauensis DSM 44728] gi|290568851|gb|ADD41816.1| ribonuclease III [Stackebrandtia nassauensis DSM 44728] Length = 243 Score = 214 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 67/209 (32%), Positives = 101/209 (48%), Gaps = 8/209 (3%) Query: 20 RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 +L A+TH S ++ + ERLEFLGD +LGL+++ L+ F EG+L+ S Sbjct: 25 PKMLTLAMTHRSYAYERGGLPTNERLEFLGDAVLGLVVTATLYRQFPDLPEGQLARLRAS 84 Query: 78 LVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 +V+ + VAR L + + + SI AD VE+L+ ALYL+ G++V Sbjct: 85 VVNMRALAGVARALGPGGVGPHLLLGKGEESSGGRDKNSILADSVEALLGALYLEHGMDV 144 Query: 135 AGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 A V K + + + D KT LQE P+Y+ +GPDH RFT Sbjct: 145 AAGVVHKLFDPMIEVAARRGAALDWKTSLQELTSGAGLGVPDYR-ISETGPDHAKRFTAW 203 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + G +G SK+ AEQ+AA + Sbjct: 204 AVVGGEEFGEGTGGSKKEAEQIAAERAWR 232 >gi|229552452|ref|ZP_04441177.1| ribonuclease III [Lactobacillus rhamnosus LMS2-1] gi|229314189|gb|EEN80162.1| ribonuclease III [Lactobacillus rhamnosus LMS2-1] Length = 231 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 7/210 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 ++ S L +R G F + SLL++A THSS + ++E ERLEFLGD +L L +S Sbjct: 3 ASEFVSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSD 62 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ F EG+L+ + V S ++E +I++ K ++ D Sbjct: 63 YLYRKFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLED 122 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEY 175 + E+ ALYLD G E F + + + +G+F +D KT LQE V Y Sbjct: 123 LFEAFNGALYLDQGREANIKFTKQIIFPK-IDAGEFSADQDHKTALQETLQQNGDVAIVY 181 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + GP H+ +F V VE+ G G Sbjct: 182 HLLDEKGPAHERQFHVDVEVEGRVLGTGFG 211 >gi|239617283|ref|YP_002940605.1| ribonuclease III [Kosmotoga olearia TBF 19.5.1] gi|239506114|gb|ACR79601.1| ribonuclease III [Kosmotoga olearia TBF 19.5.1] Length = 249 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 70/214 (32%), Positives = 107/214 (50%), Gaps = 11/214 (5%) Query: 19 NRSLLEKALTHSSISHS------YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 + + KAL HSS ++ ES ERLEFLGD +L L ++ LL+ + EG +S Sbjct: 20 DTEWIFKALCHSSYANEVVRKGMNVESNERLEFLGDAVLALSLADLLYREY-DVDEGVMS 78 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + S + ++VAR +++ ++ + K SI AD E+++ ALYL G Sbjct: 79 KTRAVVASEKVLAEVARNMNIGEYLLLGKGELKTGGRGRDSILADAFEAILGALYLSEGF 138 Query: 133 EVAGTFVDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 E+A FV + + ++AL + D KT LQE GV PEY G + F Sbjct: 139 EIARNFVKEKLGIYIEKALN-KELVLDYKTTLQELTQGNLGVRPEYSYIENIGTPQNKLF 197 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V V ++G A A G +K+AAEQ AA + ++ Sbjct: 198 HVEVRVNGKALAVGYGKTKKAAEQDAARKAYEKL 231 >gi|281358070|ref|ZP_06244554.1| ribonuclease III [Victivallis vadensis ATCC BAA-548] gi|281315443|gb|EFA99472.1| ribonuclease III [Victivallis vadensis ATCC BAA-548] Length = 232 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 115/223 (51%), Gaps = 5/223 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLF 60 A L+KR+G+A + L +A+TH S + ++ +RLEFLGD +L ++++ LF Sbjct: 2 ARNIEELKKRLGFAGPWSNRLAEAVTHRSYAVENNLGYDNQRLEFLGDAVLEIILTEYLF 61 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + A EGE++ ++LV +++AR +L ++ + S AD+ E Sbjct: 62 HLYPDAAEGEMTKIRSALVREPALARLARRFELGEYLLTGRGEHDSGGADRDSTLADLFE 121 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 +++ A YLD G + FV + + K +LQE++ +G+TP+Y + Sbjct: 122 AVLGAFYLDAGFDATRQFVTGLIRDEYPDPRSLLTSINPKGQLQEYSQRHWGLTPKYSIL 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 SGP+H P + V V +S A G +++AAE AA ++ + Sbjct: 182 HTSGPEHLPVYEVEVRLS-RYNAVGRAANRKAAEGDAARQLYR 223 >gi|258539823|ref|YP_003174322.1| ribonuclease III [Lactobacillus rhamnosus Lc 705] gi|257151499|emb|CAR90471.1| Ribonuclease III [Lactobacillus rhamnosus Lc 705] Length = 231 Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 7/210 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 ++ S L +R G F + SLL++A THSS + ++E ERLEFLGD +L L +S Sbjct: 3 ASEFVSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSD 62 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ F EG+L+ + V S ++E +I++ K ++ D Sbjct: 63 YLYRKFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLED 122 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEY 175 + E+ ALYLD G E F + + + +G+F +D KT LQE V Y Sbjct: 123 LFEAFNGALYLDQGREANIKFAKQIIFPK-IDAGEFSADQDHKTALQETLQQNGDVAIVY 181 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + GP H+ +F V VE+ G G Sbjct: 182 HLLDEKGPAHERQFHVDVEVEGRVLGTGFG 211 >gi|257063721|ref|YP_003143393.1| ribonuclease III [Slackia heliotrinireducens DSM 20476] gi|256791374|gb|ACV22044.1| ribonuclease III [Slackia heliotrinireducens DSM 20476] Length = 300 Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 110/220 (50%), Gaps = 4/220 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNH 62 + ++ IG F N +L A+TH S + + SYERLEFLGD ILG +++ F+ Sbjct: 11 KIQRAQEIIGTQFGNTDILLHAITHPSATEGKPVKLSYERLEFLGDSILGAIVANEAFHR 70 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG L+ +LVS + S+VA EL I S + + S +V E++ Sbjct: 71 YPDLDEGGLTRIKVALVSGASLSKVAAELGFEDIIVFGSSEQGTGKRGLHSALENVYEAV 130 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +AALYLD G+E A +FV K R + + K+ LQE + G+TP YK+ Sbjct: 131 VAALYLDQGMEGARSFVMKTLVPRMSRELATEPENPKSALQEKLQEE-GITPTYKLVETQ 189 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP HD F V A A GM +K+ +E AA L+ Sbjct: 190 GPPHDRTFVSQVFAGMKALASGMGRTKKESESQAAKAALE 229 >gi|229815433|ref|ZP_04445765.1| hypothetical protein COLINT_02481 [Collinsella intestinalis DSM 13280] gi|229808966|gb|EEP44736.1| hypothetical protein COLINT_02481 [Collinsella intestinalis DSM 13280] Length = 241 Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats. Identities = 75/213 (35%), Positives = 105/213 (49%), Gaps = 4/213 (1%) Query: 1 MSALRYSTL-EKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLIST 57 MS L ++ G+ F + LL A+TH S SYERLEFLGD ILG +++ Sbjct: 1 MSIADKLALAQEICGHEFTDVQLLRSAITHPSAVEGEPVSASYERLEFLGDSILGSIVAL 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF + + EG+L+ SLVS T S+V EL + I + + + M S + Sbjct: 61 SLFKTYGAFDEGKLTRLKVSLVSGATLSEVGLELGIDKIIILGASEQGTGARGMHSALEN 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYK 176 V E+LI ALYLDGG +VA F+ + K + + K+ LQE + P YK Sbjct: 121 VYEALIGALYLDGGWDVAEAFITRTLKPHLADERAEHPSNPKSYLQECVQSDRMDPPAYK 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 V GP H P FT V + G+ +G SK+ Sbjct: 181 VIGEDGPAHQPTFTAVALVDGIRRGRGTGSSKK 213 >gi|159905527|ref|YP_001549189.1| ribonuclease III [Methanococcus maripaludis C6] gi|159887020|gb|ABX01957.1| Ribonuclease III [Methanococcus maripaludis C6] Length = 229 Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + L ++ F + ++ ++A HSS + + E ERLE+LGD +L L+IS LF Sbjct: 3 NFEKLLSKLDIKFNDLNIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLELIISEYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ EGE+S V A++L +++ + +I +DV E Sbjct: 63 KQ-ENLSEGEMSKLRAKYVCESALFTYAKKLKFDNYVLLGKGELISKGYNKPAIVSDVFE 121 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179 + IAA+YLD G+ A FV + +S K D KT+LQE+ + Y Sbjct: 122 AFIAAIYLDQGLNSAKKFVYNHILPIIEESSKELFIDYKTKLQEF-PELINKSINYVNLE 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G HD +F V V+ +G+ SK+ AE AA L + Sbjct: 181 EAGEPHDKKFVVAVKQDRKILGKGIGKSKKEAEMKAAKNALLKL 224 >gi|320108696|ref|YP_004184286.1| ribonuclease III [Terriglobus saanensis SP1PR4] gi|319927217|gb|ADV84292.1| ribonuclease III [Terriglobus saanensis SP1PR4] Length = 252 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 24/243 (9%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIST 57 M+ + L +R+GY F + LL+ ALTHSS++ ES ER+EF+GD ++GL+++ Sbjct: 1 MAKAAKTGLAERLGYKFRDAKLLDLALTHSSLAFEAGTASESNERMEFVGDAVVGLIVAE 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF F S EGEL+ LVS + +V L L ++++ + ++ A+ Sbjct: 61 SLFQRFPSLGEGELTRMRALLVSRKHLGEVGARLGLGEYLQLGRGEEQSGGRKKPALMAN 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDK---YWKQRALKSGKFRR--------DAKTELQEWAH 166 +E+++AA+YLDGG+ V++ K L+ + D K+ LQE Sbjct: 121 AMEAVLAAVYLDGGLSAVQEIVEREVVLPKMPELERAAGEQTHFGGVVGDYKSALQELLQ 180 Query: 167 AK--FGVTPEYKVTFRSGPDHDPRFTVVVEI--------SGLAPAQGMDCSKRAAEQVAA 216 A+ Y SGPDH F V + + A G +K+AA+Q AA Sbjct: 181 ARGVGSAVARYVTAEESGPDHRKHFRVELMLVEGDAASKKETLLAVGEGPTKKAAQQKAA 240 Query: 217 AEV 219 Sbjct: 241 EIA 243 >gi|302872013|ref|YP_003840649.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47] gi|302574872|gb|ADL42663.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47] Length = 222 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 114/223 (51%), Gaps = 11/223 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +EK +GY F +++LL+ ALTH S +HS + YERLEFLGD L L +S L+ +F Sbjct: 2 EEIEKALGYKFEDKNLLKLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLYVYFPEL 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ ++V ++T S+VA +L+L + I + + SI ADV+E+L A+ Sbjct: 62 SEGELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEALFGAI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY---KVTFRS 181 +++ G + + K K +GK D KT+LQE + Y ++ + Sbjct: 122 FIESGFDTVEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIVQREGQKKIVYKDCEILEK- 180 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + I G ++G SK+ A+Q AA + L G Sbjct: 181 -----KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218 >gi|199597132|ref|ZP_03210564.1| dsRNA-specific ribonuclease [Lactobacillus rhamnosus HN001] gi|258508646|ref|YP_003171397.1| ribonuclease III [Lactobacillus rhamnosus GG] gi|199591936|gb|EDZ00011.1| dsRNA-specific ribonuclease [Lactobacillus rhamnosus HN001] gi|257148573|emb|CAR87546.1| Ribonuclease III [Lactobacillus rhamnosus GG] gi|259649952|dbj|BAI42114.1| ribonuclease III [Lactobacillus rhamnosus GG] Length = 231 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 7/210 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 ++ S L +R G F + SLL++A THSS + ++E ERLEFLGD +L L +S Sbjct: 3 ASEFVSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSD 62 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ F EG+L+ + V S ++E +I++ K ++ D Sbjct: 63 YLYRKFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLED 122 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEY 175 + E+ ALYLD G E F + + + +G+F +D KT LQE V Y Sbjct: 123 LFEAFNGALYLDQGREANIKFAKRIIFPK-IDAGEFSADQDHKTALQETLQQNGDVAIVY 181 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + GP H+ +F V VE+ G G Sbjct: 182 HLLDEKGPAHERQFHVDVEVEGHVLGTGFG 211 >gi|269792704|ref|YP_003317608.1| ribonuclease III [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100339|gb|ACZ19326.1| ribonuclease III [Thermanaerovibrio acidaminovorans DSM 6589] Length = 226 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 107/206 (51%), Gaps = 9/206 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 L+ R+GY FA+ LL +ALTHSS ++ Q ERLEFLGD +LGL ++ L+ Sbjct: 11 LEELQDRVGYRFADTQLLIEALTHSSFANQAQLGYCNERLEFLGDSVLGLCVAEELYRRH 70 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S +EG L+ ++ VS+ ++ R L L +RV ++ + AD +E+LI Sbjct: 71 PSEREGRLTKLKSTGVSSHNLARSGRVLGLDRVLRVGKAIK---GGPSEGMVADAMEALI 127 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG+E A V ++ +L S +D K+ LQE A P Y++ GP Sbjct: 128 GAVYLDGGLEAARGIVSRHVSLDSLSS----QDPKSALQEMAQRLGIPLPSYRLVEVRGP 183 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 +H F V V + G G S+R Sbjct: 184 EHRATFVVQVWLKGELMGVGNGGSRR 209 >gi|258592173|emb|CBE68482.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [NC10 bacterium 'Dutch sediment'] Length = 246 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 72/211 (34%), Positives = 104/211 (49%), Gaps = 5/211 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEG 69 G+ F N +LLE ALTH S + Q Y+RLEFLGD + L +S L + +A EG Sbjct: 18 GHRFRNSTLLEAALTHPSSTDPSQADVRLRYQRLEFLGDAVWSLYVSDALVSLLPTASEG 77 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 EL+ R LVSA + +A+ LA + +S T + + E++I A+YLD Sbjct: 78 ELTQRRAGLVSATALADMAQLHGLAPLLLLSKGEELTGGRLKTRVLSSSFEAVIGAIYLD 137 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 GG+E + L+ D KT LQ A + TP Y++ RSG H P F Sbjct: 138 GGLEAIRDLAREACV-NTLEGEHVTLDPKTALQHLAQSLLHATPRYRLIRRSGAPHAPTF 196 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V V + A+G +++ AE+ AA + L Sbjct: 197 EVEVIVGQSPIAKGKGRNRQEAERAAAQDAL 227 >gi|152965344|ref|YP_001361128.1| ribonuclease III [Kineococcus radiotolerans SRS30216] gi|151359861|gb|ABS02864.1| Ribonuclease III [Kineococcus radiotolerans SRS30216] Length = 224 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 63/193 (32%), Positives = 96/193 (49%), Gaps = 5/193 (2%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LLE ALTH S ++ + ERLEFLGD +LGL+++ L+ F+ EG L+ Sbjct: 4 DAGLLELALTHRSYAYEQGGLPTNERLEFLGDSVLGLVVTHELYTRFEDVSEGRLAKLRA 63 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 ++V++ + +AR LDL + +R+ +SI AD +E++I A +L G++ A Sbjct: 64 AVVNSRALADIARGLDLGAHVRLGKGELGTGGRDKSSILADTMEAVIGAAFLSVGMDGAR 123 Query: 137 TFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 FV + S + D KT LQE ++ P Y +T SGPDH FT Sbjct: 124 EFVLRLTSPLMDSSERLGAGTDWKTALQELTASEGLGVPSYAITD-SGPDHAKNFTADAV 182 Query: 195 ISGLAPAQGMDCS 207 + G G S Sbjct: 183 VGGTVLGHGEGRS 195 >gi|317495799|ref|ZP_07954162.1| ribonuclease III [Gemella moribillum M424] gi|316913976|gb|EFV35459.1| ribonuclease III [Gemella moribillum M424] Length = 237 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 104/233 (44%), Gaps = 9/233 (3%) Query: 1 MSALRYSTLEKRIG--YAFANR--SLLEKALTHSSISHSYQE----SYERLEFLGDRILG 52 M L ++ Y F + + A +HSS ++ + +YERLEFLGD ++ Sbjct: 1 MERTYIEKLLNKLNNEYGFNLKFGENFKMAFSHSSYTNEKKIAKHLNYERLEFLGDAVVE 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L S LF F EGEL+ S+V +T + A +L+L I + K Sbjct: 61 LTTSEFLFKKFPKLAEGELTKLRASIVCEKTLVKYALQLNLDKCIYLGRGEEKMGGRSRA 120 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 ++ AD+ ES ALYL+ +E F++ + + D KT LQE+ Sbjct: 121 ALLADIFESFTGALYLETNLETVKIFLNNTLFTEVEDYEYSSFVDYKTILQEYVFKIKLG 180 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 EYKV GP H F VEI G G +K+ +EQ++A + L + G Sbjct: 181 EIEYKVLDSIGPSHSKTFISAVEIDGKQYGSGTAATKKESEQLSAKQALDKLG 233 >gi|62258114|gb|AAX77768.1| unknown protein [synthetic construct] Length = 265 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 9/221 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS +GY F + +LL +ALTH S +++YERLEFLGD +L +I+ +L+ F Sbjct: 30 EYSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFI 86 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS + LV T +Q+A L + +I + + I DV E++I Sbjct: 87 DLAEGKLSQLRSKLVKGATLAQLASSLKMDEYIILGASE--QGGHKREKILEDVFEAVIG 144 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD + K+++ + + +D+K++LQE PEY + Sbjct: 145 AIYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 204 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G DH+ +FTVV L + S++ AEQ A ++++ Sbjct: 205 GKDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIE 245 >gi|312135000|ref|YP_004002338.1| ribonuclease iii [Caldicellulosiruptor owensensis OL] gi|311775051|gb|ADQ04538.1| ribonuclease III [Caldicellulosiruptor owensensis OL] Length = 222 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 113/223 (50%), Gaps = 11/223 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +EK +GY F +++LL ALTH S +HS + YERLEFLGD L L +S L+ +F Sbjct: 2 EEIEKALGYKFEDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLYVYFPEL 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ ++V ++T S+VA +L+L + I + + SI ADV+E+L A+ Sbjct: 62 SEGELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFYENKSILADVLEALFGAI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY---KVTFRS 181 +++ G + + K K +GK D KT+LQE + Y ++ + Sbjct: 122 FIESGFDTVEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIVQREGQKKIVYKDCEILEK- 180 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + I G ++G SK+ A+Q AA + L G Sbjct: 181 -----KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218 >gi|154483581|ref|ZP_02026029.1| hypothetical protein EUBVEN_01285 [Eubacterium ventriosum ATCC 27560] gi|149735491|gb|EDM51377.1| hypothetical protein EUBVEN_01285 [Eubacterium ventriosum ATCC 27560] Length = 190 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 65/184 (35%), Positives = 98/184 (53%), Gaps = 1/184 (0%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 + ERLEFLGD +L LL S L+ + EG+++ SLV T + ARE+DL FI Sbjct: 2 KDNERLEFLGDAVLELLSSEYLYKNMKDMPEGKMTKLRASLVCEPTLAMDAREIDLEDFI 61 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + + SI +D E+LI A++LDGGIE A F+ K + ++ K D+ Sbjct: 62 YLGKGEDETGGRKRDSIVSDAFEALIGAIFLDGGIEEAKYFILK-FALNDIEKKKLFYDS 120 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 KT LQE ++ Y++ GPDH+ + +++G +G +K+AAEQ AA Sbjct: 121 KTVLQERVNSVKNGNLVYEIIKEWGPDHNKTYEAAAKLNGKIIGKGQGHTKKAAEQQAAF 180 Query: 218 EVLK 221 + LK Sbjct: 181 DALK 184 >gi|225847889|ref|YP_002728052.1| ribonuclease III [Sulfurihydrogenibium azorense Az-Fu1] gi|225644365|gb|ACN99415.1| ribonuclease III [Sulfurihydrogenibium azorense Az-Fu1] Length = 238 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 118/226 (52%), Gaps = 9/226 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61 R LEK + Y F ++SLL A+TH S Y + YE LEFLGD +L L++S +L Sbjct: 11 RVENLEKLLDYNFKDKSLLLAAITHRSFVAEYPVKLKDYEVLEFLGDSVLSLIVSEILIK 70 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS +++VS S++A+ L+L F+ +S + S S+ DV E+ Sbjct: 71 QFPDAREGDLSQLRSAIVSEAYLSKLAKLLNLGQFVLISKGEKSQKGSERDSLLCDVFEA 130 Query: 122 LIAALYLDG--GIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + A+Y+D I+ +K +K++ +K+ RD K+ LQ +G P+Y+ Sbjct: 131 VFGAIYIDTDYNIDTPRNVFNKLFKEKLLQDIKTENIPRDYKSLLQIETQKLYGKIPKYR 190 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + GP+HD F V EI + SK+ AE AA E ++ Sbjct: 191 LIHSEGPEHDKVFVVECEIEKIKTTG-KGKSKKEAETQAAKEAFRK 235 >gi|89900532|ref|YP_523003.1| ribonuclease III [Rhodoferax ferrireducens T118] gi|122479398|sp|Q21XN1|RNC_RHOFD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|89345269|gb|ABD69472.1| RNAse III [Rhodoferax ferrireducens T118] Length = 228 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 77/209 (36%), Positives = 108/209 (51%), Gaps = 6/209 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ R+ + F+N LL +ALTH S S + ERLEFLGD +LGL ++ LL+ + Sbjct: 7 ALQARLQHEFSNPGLLTRALTHRSFS---LDHNERLEFLGDSVLGLAVADLLYERLSTLP 63 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS +LV +T +A L L IR+ + SI AD +E++I A+Y Sbjct: 64 EGDLSRVRANLVKQDTLHHLALGLGLPEVIRLGEGEARSGGHKRPSILADALEAVIGAVY 123 Query: 128 LDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD G VA V + ++ +KS +D KTELQEW + P Y+V G H Sbjct: 124 LDAGFAVAQGLVRRLFQAVEIKSDMEAIGKDPKTELQEWLQGRKMNLPLYRVVATLGAAH 183 Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213 F V EI L +G+ S+RA EQ Sbjct: 184 KQTFDVECEIVELNFLERGIGGSRRAGEQ 212 >gi|134045095|ref|YP_001096581.1| ribonuclease III [Methanococcus maripaludis C5] gi|132662720|gb|ABO34366.1| RNAse III [Methanococcus maripaludis C5] Length = 229 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + L ++ F + ++ ++A HSS + + E ERLE+LGD +L L+I LF Sbjct: 3 NFEKLLSKLDIKFNDLNIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLELIIIEYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ EGE+S V A++L+ ++I + +I +DV E Sbjct: 63 KK-ENLSEGEMSKLRAKYVCESALFTYAKKLNFNNYILLGKGELNSKGYNKPAIISDVFE 121 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179 + IAA+YLD G++ A FV +S K D KT LQE T +Y Sbjct: 122 AFIAAIYLDQGLDSAKKFVYNNIIPIIEESSKELFIDHKTRLQE-LPELNNKTIKYVKLE 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G HD +F + V+ +G+ SK+ AE AA L + Sbjct: 181 EAGKPHDKKFVIAVKSGQKMLGKGIGKSKKEAEMKAAKNALLKL 224 >gi|50365047|ref|YP_053472.1| ribonuclease III, dsRNA-specific ribonuclease [Mesoplasma florum L1] gi|81391925|sp|Q6F1N5|RNC_MESFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|50363603|gb|AAT75588.1| ribonuclease III, dsRNA-specific ribonuclease [Mesoplasma florum L1] Length = 231 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 114/226 (50%), Gaps = 6/226 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + + G + + ALTH+S ++ + E+Y+RLEFLGD +L + +S L+ Sbjct: 1 MTMHEFFENFGIKINDSKIFSTALTHNSYANETKTKETYQRLEFLGDAVLQMYVSKFLYL 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +F +A EG+L+ + +V ET S++A+ +DL IR+ K SI +DV E+ Sbjct: 61 NFTNAPEGKLTKTRSDIVRQETLSEIAKMIDLGKIIRLGQGEIKSKGYEKPSILSDVYEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+YLD EV +++ + K+ + D K+ELQE A+ EY+V Sbjct: 121 VTAAIYLDQTEEVLISWIKSTIFKYIEKNDYKELNHDYKSELQEIIQAEIRSDLEYRVES 180 Query: 180 RS--GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + D+ +TV V + G G SK+ A Q AA + L + Sbjct: 181 QKHIEKDNKIEYTVSVNLDGKKYGIGTGFSKQEASQNAAKDCLNKL 226 >gi|156501954|ref|YP_001428019.1| ribonuclease III [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954597|ref|ZP_06559218.1| ribonuclease III [Francisella tularensis subsp. holarctica URFT1] gi|295311940|ref|ZP_06802764.1| ribonuclease III [Francisella tularensis subsp. holarctica URFT1] gi|189043315|sp|A7NAR0|RNC_FRATF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|156252557|gb|ABU61063.1| ribonuclease III [Francisella tularensis subsp. holarctica FTNF002-00] Length = 230 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 9/221 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS +GY F + +LL +ALTH S +++YERLEFLGD +L +I+ +L+ F Sbjct: 4 EYSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFT 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS + LV T +Q+A L + +I + + + I DV E++I Sbjct: 61 DLAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGASE--QGGNKREKILEDVFEAVIG 118 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD + K+++ + + +D+K++LQE PEY + Sbjct: 119 AIYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 178 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G DH+ +FTVV L + S++ AEQ A ++++ Sbjct: 179 GKDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIE 219 >gi|134301463|ref|YP_001121431.1| ribonuclease III [Francisella tularensis subsp. tularensis WY96-3418] gi|189043317|sp|A4IWK9|RNC_FRATW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|134049240|gb|ABO46311.1| ribonuclease III [Francisella tularensis subsp. tularensis WY96-3418] Length = 230 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 9/221 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS +GY F + +LL +ALTH S +++YERLEFLGD +L +I+ +L+ F Sbjct: 4 EYSRFYNILGYNFKDCTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFT 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS + LV T +Q+A L + +I + + I DV E++I Sbjct: 61 DLAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGASE--QGGHKREKILEDVFEAVIG 118 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD + K+++ + + +D+K++LQE PEY + Sbjct: 119 AIYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 178 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G DH+ +FTVV L + S++ AEQ A ++++ Sbjct: 179 GKDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIE 219 >gi|222444593|ref|ZP_03607108.1| hypothetical protein METSMIALI_00205 [Methanobrevibacter smithii DSM 2375] gi|261350869|ref|ZP_05976286.1| ribonuclease III [Methanobrevibacter smithii DSM 2374] gi|222434158|gb|EEE41323.1| hypothetical protein METSMIALI_00205 [Methanobrevibacter smithii DSM 2375] gi|288860206|gb|EFC92504.1| ribonuclease III [Methanobrevibacter smithii DSM 2374] Length = 223 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 3/219 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSA 66 L ++ +R L + A TH S + Y ERLEFLGD +L +++S L+ + Sbjct: 3 LLEKFNIVPKDRHLYDVAFTHGSYGTKHGLDYTYERLEFLGDSVLNMIVSEYLYKQYPDY 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+L+ + V + EL L I++ D K + + SI ADV ES + A+ Sbjct: 63 EEGKLTKLRANYVCQTALIYYSHELGLDKHIKIYGDDSKITENEVLSITADVFESFLGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +LD GIE A ++ K F D K+ ++E+ A+ V EYK+ G H+ Sbjct: 123 FLDQGIEFAKDYISKIIFPYIDAKKVFFFDYKSVIKEYGDAQ-EVDIEYKIIDECGVPHN 181 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 F + + I G G +K+ AEQ A+ + +K+ I Sbjct: 182 KTFIISILIDGKEMGVGKGKNKKEAEQAASKQAMKKLKI 220 >gi|300783718|ref|YP_003764009.1| ribonuclease III [Amycolatopsis mediterranei U32] gi|299793232|gb|ADJ43607.1| ribonuclease III [Amycolatopsis mediterranei U32] Length = 234 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 69/210 (32%), Positives = 103/210 (49%), Gaps = 8/210 (3%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL +LTH S ++ ERLEFLGD +LGL+++ L+N EG+L+ Sbjct: 10 DPELLRLSLTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLYNTHPDLPEGQLAKLRA 69 Query: 77 SLVSAETCSQVAR---ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S+V+ ++VAR E L + + + SI AD +E++I A+YL+ GIE Sbjct: 70 SVVNMHALARVARGLGEGGLGAHLLLGKGEELTGGRDKASILADGLEAVIGAVYLEHGIE 129 Query: 134 VAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 +A V + ++ D KT LQE + PEYKV +GPDH FT Sbjct: 130 IARKLVHHLFDGLLAEAPLRGAGLDWKTSLQELTASAGLGVPEYKVED-TGPDHRKEFTA 188 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V ++G G +K+ AEQ AA + Sbjct: 189 TVLVAGRPLGHGAGSTKKEAEQKAAETAWR 218 >gi|254415469|ref|ZP_05029229.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420] gi|196177650|gb|EDX72654.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420] Length = 239 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 11/206 (5%) Query: 16 AFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N +L ALTH S + + E ERLEFLGD +LG ++ LL+ + E L+ Sbjct: 18 TIKNETLRLSALTHRSYVNEHPKAGEHNERLEFLGDAVLGFVVGELLYKRYPDVSEAHLT 77 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +LV + ++ A +L + +R+ K+ ++ +D +E+ +AA Y++ GI Sbjct: 78 RLRANLVDEKQLAKFASQLGIGDLMRLGKGADKEGGRQNPALLSDTLEAYMAAYYIESGI 137 Query: 133 EVAGTFVDKYWK--------QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + F+ + Q++ K D K Q+WA A F P Y + SG D Sbjct: 138 DAVRQFIYPLFSRVADSIAVQQSDTEPKNLVDPKGRFQQWALANFVENPTYSIIDESGLD 197 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRA 210 H FT V + G G K+ Sbjct: 198 HAKEFTAEVRVKGKVYGVGTGRRKQD 223 >gi|319440517|ref|ZP_07989673.1| ribonuclease III [Corynebacterium variabile DSM 44702] Length = 247 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 108/225 (48%), Gaps = 7/225 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 S ++ L + G ++ +L AL+H S ++ + ERLEFLGD +LGL ++ L Sbjct: 18 SKTDHTPLLEAWGVELSD-GMLRLALSHRSFANENGNLPNNERLEFLGDALLGLSVAEQL 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F E ++S +V+ ++VAREL + I + + SI AD V Sbjct: 77 YRQFPDRSESDISKMRAGVVNMYALAEVARELGMGGNILLGRGEEMTGGADKHSILADSV 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQE-WAHAKFGVTPEYK 176 E+++ A+YL+ G EVA V + ++++ + D KT L E + K P Y Sbjct: 137 EAMLGAIYLECGFEVARATVLRIFERKITTAPSTGLTMDWKTVLLEKMSDLKISGDPVYA 196 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + GPDHD F+ V G A G +K+ AE AA E + Sbjct: 197 -SDVKGPDHDQTFSATVSFDGEARGTGTGHTKKEAEHHAAREAYR 240 >gi|254804568|ref|YP_003082789.1| ribonuclease III family protein [Neisseria meningitidis alpha14] gi|254668109|emb|CBA04665.1| ribonuclease III family protein [Neisseria meningitidis alpha14] gi|254670529|emb|CBA06329.1| ribonuclease III [Neisseria meningitidis alpha153] Length = 310 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++KR+GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 82 HAAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPK 138 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 139 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 198 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + +R + +D KT LQE A+ P+Y++ + G Sbjct: 199 VSFDADFNTAEKVVRHLFAERVRRVDFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 258 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 +D F V ++ L + S+ Sbjct: 259 ANDSMFVVSCDLGELGFVCRAKGTSR 284 >gi|256824933|ref|YP_003148893.1| RNAse III [Kytococcus sedentarius DSM 20547] gi|256688326|gb|ACV06128.1| RNAse III [Kytococcus sedentarius DSM 20547] Length = 228 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 68/205 (33%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + LE+ +G + LL +A+TH S S+ + ERLEFLGD +LGL+++ L+ Sbjct: 6 ARLEEVVGV-PVDADLLLQAVTHRSFSYENDDAPHNERLEFLGDSVLGLVVTNHLYRANP 64 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ +++VSA A LDL + R+ SI AD VE++I Sbjct: 65 DLPEGELAKLRSAVVSARALGGEAGRLDLGDYFRLGRGEENSGGRAKNSILADGVEAVIG 124 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL G++ A T V + +S D KT LQE A+ PEY++T SG Sbjct: 125 AVYLSSGLDAATTVVHHLLDELMEQSQTMGAALDWKTSLQELGSARGLGLPEYRITD-SG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCS 207 PDH F + G G + Sbjct: 184 PDHAKLFEATAVLGGEEAGTGSGPT 208 >gi|168698810|ref|ZP_02731087.1| ribonuclease III [Gemmata obscuriglobus UQM 2246] Length = 215 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 64/202 (31%), Positives = 106/202 (52%), Gaps = 3/202 (1%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LL ALTH+S +++ S ERLEFLGD +LGL+ L+ F +EG+L+ +++VS Sbjct: 2 ELLRSALTHTSSANTRAASNERLEFLGDSVLGLVTCEQLYRRFPEYQEGDLTKVKSAVVS 61 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 +TC++ ++E+ L F+ + + +I A+ ESL+AA++LDGG + A FV Sbjct: 62 RKTCARFSQEIRLGDFLFLGRGV-NSNGEMPLNILANAFESLVAAVFLDGGWDAARDFVL 120 Query: 141 KYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + + +AK++LQ ++G TP Y + GPD++ F V ++ Sbjct: 121 DFIDPEVDRVARDAISANAKSQLQTVTQREYGDTPRYFLLDEQGPDNNKCFKVAAQVHDE 180 Query: 199 APAQGMDCSKRAAEQVAAAEVL 220 +K+ AE AA L Sbjct: 181 RFPAAWGHTKKEAELKAAMNAL 202 >gi|269218651|ref|ZP_06162505.1| ribonuclease III [Actinomyces sp. oral taxon 848 str. F0332] gi|269211762|gb|EEZ78102.1| ribonuclease III [Actinomyces sp. oral taxon 848 str. F0332] Length = 228 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 111/222 (50%), Gaps = 6/222 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNH 62 + Y L +R G LL ALTH S + + E ERLEFLGD +LG + + +F Sbjct: 1 MSYRELVERWGVDIRRP-LLRLALTHRSFAFEHDEPHNERLEFLGDSVLGFITADKVFRE 59 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F ++EG++S VS + + +AREL+L FIR+ SI +D VE+L Sbjct: 60 FPDSREGDMSRMKTFAVSEKALASIARELELGRFIRLGRGEDLSGGRDKDSILSDTVEAL 119 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGV-TPEYKVTF 179 IAA YL G++VA V++ + + D +T +E AH + V + ++++T Sbjct: 120 IAATYLQHGLDVARKIVERLVAAKIEDASLLGPNLDWQTSFEEVAHERGMVGSLQFELTS 179 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDH +T V + G +G SK+ A Q AA + Sbjct: 180 E-GPDHQRVYTAVASMGGRVWGEGTGSSKKTARQAAAQVAYR 220 >gi|83589801|ref|YP_429810.1| ribonuclease III [Moorella thermoacetica ATCC 39073] gi|123524697|sp|Q2RJX2|RNC_MOOTA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|83572715|gb|ABC19267.1| RNAse III [Moorella thermoacetica ATCC 39073] Length = 233 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 60/213 (28%), Positives = 101/213 (47%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLE---KRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLI 55 M R L+ ++ + L+ ALTH + + + +RLEFLGD +LGL++ Sbjct: 1 MDNKRQEQLQHFWEQFHLPAIDLEGLDLALTHPTYAFEHHLPGDNQRLEFLGDAVLGLVV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 +T L+ HF EG+L+ ++V + +VAR L + +R+ S Sbjct: 61 ATYLYQHFPQLPEGDLTRMRAAVVCEASLVKVARRLRVGDLLRLGQGEEHSGGRERPSNL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPE 174 AD +E++I ++YL GG E+A FV + + + S D+K+ LQE+ ++ Sbjct: 121 ADAMEAIIGSVYLSGGYELARDFVLQIFTPALEILSDTSFIDSKSALQEFVQSQGTENVV 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 YK+ GPDH + V + A G+ S Sbjct: 181 YKILEEWGPDHAKGYKAGVFLKNRLLATGLGHS 213 >gi|89255958|ref|YP_513320.1| ribonuclease III [Francisella tularensis subsp. holarctica LVS] gi|187931188|ref|YP_001891172.1| ribonuclease III [Francisella tularensis subsp. mediasiatica FSC147] gi|254367315|ref|ZP_04983341.1| ribonuclease III [Francisella tularensis subsp. holarctica 257] gi|254368791|ref|ZP_04984804.1| hypothetical protein FTAG_00596 [Francisella tularensis subsp. holarctica FSC022] gi|122501056|sp|Q2A4N2|RNC_FRATH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238691551|sp|B2SFY4|RNC_FRATM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|89143789|emb|CAJ78994.1| Ribonuclease III [Francisella tularensis subsp. holarctica LVS] gi|134253131|gb|EBA52225.1| ribonuclease III [Francisella tularensis subsp. holarctica 257] gi|157121712|gb|EDO65882.1| hypothetical protein FTAG_00596 [Francisella tularensis subsp. holarctica FSC022] gi|187712097|gb|ACD30394.1| ribonuclease III [Francisella tularensis subsp. mediasiatica FSC147] Length = 230 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 9/221 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS +GY F + +LL +ALTH S +++YERLEFLGD +L +I+ +L+ F Sbjct: 4 EYSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFT 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS + LV T +Q+A L + +I + + I DV E++I Sbjct: 61 DLAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGASE--QGGHKREKILEDVFEAVIG 118 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD + K+++ + + +D+K++LQE PEY + Sbjct: 119 AIYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 178 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G DH+ +FTVV L + S++ AEQ A ++++ Sbjct: 179 GKDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIE 219 >gi|256027058|ref|ZP_05440892.1| ribonuclease III [Fusobacterium sp. D11] gi|289765042|ref|ZP_06524420.1| ribonuclease III [Fusobacterium sp. D11] gi|289716597|gb|EFD80609.1| ribonuclease III [Fusobacterium sp. D11] Length = 234 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 63/236 (26%), Positives = 114/236 (48%), Gaps = 25/236 (10%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ Sbjct: 3 NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + +A EG ++ +VS ++++R++ + F+ +S SI AD E Sbjct: 63 KSYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILADSFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+Y+D ++ A F + KQ ++ + D K+ LQE+ +F P YK+ Sbjct: 123 AILGAVYIDSNLDDARNFTLSHIKQYIDHIEEDEDILDFKSILQEYVQKEFRTVPTYKLI 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA---------AEQVAAAEVLKREGI 225 GPDH F + V + + R AEQ++A + + G+ Sbjct: 183 AERGPDHMKEFEIQVIVG----------NYREKAVAKNKKKAEQLSAKALCIKLGV 228 >gi|115314441|ref|YP_763164.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18] gi|122325533|sp|Q0BN07|RNC_FRATO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|115129340|gb|ABI82527.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18] Length = 230 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 9/221 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS +GY F + +LL +ALTH S +++YERLEFLGD +L +I+ +L+ F Sbjct: 4 EYSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFT 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS + LV T +Q+A L + +I + + I DV E++I Sbjct: 61 DLAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGASE--QGGHKREKILEDVFEAVIG 118 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD + K+++ + +D+K++LQE PEY + Sbjct: 119 AIYLDSDFATVKKVILKWYQPIISSINLDTIKFKDSKSKLQEILLQNALSLPEYSIETID 178 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G DH+ +FTVV L + S++ AEQ A ++++ Sbjct: 179 GKDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIE 219 >gi|269215480|ref|ZP_06159334.1| ribonuclease III [Slackia exigua ATCC 700122] gi|269130967|gb|EEZ62042.1| ribonuclease III [Slackia exigua ATCC 700122] Length = 312 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 75/214 (35%), Positives = 110/214 (51%), Gaps = 4/214 (1%) Query: 10 EKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 + IG AF + +L A+TH S + + SYERLEFLGD ILG +++ F+ + Sbjct: 15 QHVIGVAFDDIDILLAAITHPSATEGKPVKFSYERLEFLGDSILGAIVANEAFHAYPEID 74 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ +LVS + S VA +L A I S R + S +V E+L+AAL+ Sbjct: 75 EGGLTRIKVALVSGSSLSDVAAKLGFADIIVFGSSERGTGRRGLHSALENVYEALVAALF 134 Query: 128 LDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 LD G++ A FV + R ++ + + K+ LQE + G+TP YK+ GP HD Sbjct: 135 LDKGMDGARDFVRRTLIPRMDIEMAREPENPKSALQEKLQEE-GITPTYKLVETQGPPHD 193 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F V A AQG+ +K+ +E AA L Sbjct: 194 RTFVSQVFAGLTALAQGIGRTKKESESQAAKAAL 227 >gi|119962673|ref|YP_948196.1| ribonuclease III (RNase III) [Arthrobacter aurescens TC1] gi|119949532|gb|ABM08443.1| putative ribonuclease III (RNase III) [Arthrobacter aurescens TC1] Length = 236 Score = 211 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 97/207 (46%), Gaps = 6/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 L KR+G + + L ALTH S ++ + ERLEFLGD ILG ++ L+ Sbjct: 5 EELLKRLGVSI-DTETLRLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDSLYRENP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S EGEL+ R +++VS + + RE+ + FI + + SI AD +E+LI Sbjct: 64 SLPEGELAKRRSAVVSTRALAGIGREIGVGEFIYLGQGEKLTDGKNKASILADTMEALIG 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A YL IE A V + +G D KT +QE ++ Y V SG Sbjct: 124 ATYLSNDIETARQLVMRLVGPLLKDAGALGAGTDWKTSIQELTASRQLGAIHYAVEG-SG 182 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDH F V+ I G +G SK+ Sbjct: 183 PDHARTFEAVLNIGGTPYGRGSGHSKK 209 >gi|145296037|ref|YP_001138858.1| ribonuclease III [Corynebacterium glutamicum R] gi|140845957|dbj|BAF54956.1| hypothetical protein [Corynebacterium glutamicum R] Length = 247 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 109/226 (48%), Gaps = 6/226 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 A+ + L +G R LL ALTH S ++ + ERLEFLGD +LGL ++ L Sbjct: 19 DAVDHQPLLDHLGVDIQ-RDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLSVANKL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S+ E ++S S+VS + +ARE+DL + I + SI AD Sbjct: 78 YEQYPSSPESDVSKMRASIVSRYGLADIAREIDLGNHILLGKGELLTEGRSKDSILADTT 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177 E+L+ A++ G E A + + + + + +D KT LQE + EY Sbjct: 138 EALLGAIFRQHGFETARDVILRLFAYKIDNASARGIHQDWKTTLQEELAQRKRPMAEYSA 197 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T GPDHD FT +V + G +G +K+ AEQ AA + ++ Sbjct: 198 TSV-GPDHDLVFTAIVTLEGEEMGRGEGPNKKLAEQEAARQAFRKL 242 >gi|294782048|ref|ZP_06747374.1| ribonuclease III [Fusobacterium sp. 1_1_41FAA] gi|294480689|gb|EFG28464.1| ribonuclease III [Fusobacterium sp. 1_1_41FAA] Length = 234 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 59/198 (29%), Positives = 103/198 (52%), Gaps = 6/198 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 LE ++ Y F NR+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ Sbjct: 3 NLLDLEHKLNYYFNNRNLLKTALLHKSLGNEKKEYKNQNNERLELLGDAVLDLIVAEYLY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ SA EG ++ +VS ++++R++ L F+ +S SI AD E Sbjct: 63 RNYKSASEGTIAKLKAMIVSEPILAKISRQIGLGKFLMLSKGEILSGGRNRESILADAFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+Y+D +E A +F + +Q ++ + D K+ LQE+ F P Y++ Sbjct: 123 AVLGAVYMDSNLEDARSFALNHIEQYITHIEEDEDILDFKSILQEYVQKNFKTVPTYELI 182 Query: 179 FRSGPDHDPRFTVVVEIS 196 GPDH F + V + Sbjct: 183 SEKGPDHMKEFEIQVVVG 200 >gi|295397856|ref|ZP_06807919.1| ribonuclease III [Aerococcus viridans ATCC 11563] gi|294973901|gb|EFG49665.1| ribonuclease III [Aerococcus viridans ATCC 11563] Length = 247 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 7/205 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L R G + + +A THSS + Q ER+EFLGD +L L++S L+ ++ Sbjct: 26 LADRFGLEIQDETHYIEAFTHSSYVNENQNLALQDNERIEFLGDAVLELVVSNYLYRNYP 85 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG +S +V E+ ++ E F+R+ + S+ D+ ES++ Sbjct: 86 EMDEGRMSSLRALIVREESLAKRCVECGFDQFVRLGNGEEASNGRKRPSLLCDLFESVLG 145 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G++ + + +K+G F R DAKT LQE + + Y++ SG Sbjct: 146 AIYLDLGLDAIEHLMSLTIYPK-IKNGDFTRLSDAKTALQEELQKEGAIQLAYELESESG 204 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCS 207 P H F V V + +G+ S Sbjct: 205 PAHSKEFHVAVRLYDEIIGRGVGHS 229 >gi|294084100|ref|YP_003550858.1| Ribonuclease III [Candidatus Puniceispirillum marinum IMCC1322] gi|292663673|gb|ADE38774.1| Ribonuclease III [Candidatus Puniceispirillum marinum IMCC1322] Length = 230 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 81/219 (36%), Positives = 120/219 (54%), Gaps = 4/219 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ L +R+ + F ++S+L +ALTH+S + +S ERLEFLGDR+LGL+++ + Sbjct: 1 MKSVDLKPLAERLAHKFNDQSVLVRALTHASFAGP-TKSNERLEFLGDRVLGLVLADFFY 59 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+LS+R ++ +V REL+LA FI V + + + S+ AD VE Sbjct: 60 GQCPDEDEGKLSLRLHADARQSKLVEVGRELELARFISVQNGMAL---AENESVIADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAA YLDGG EVA F+ YW +DAK+ LQE + P Y++ + Sbjct: 117 SLIAAHYLDGGFEVARRFILAYWALDTAAPAGTDKDAKSRLQELVMKQGLALPHYRLISK 176 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 SGPDH P V + G +++ AEQ AAA + Sbjct: 177 SGPDHAPEMIYEVSVEGYDSIVASASNRKLAEQQAAALM 215 >gi|237743502|ref|ZP_04573983.1| ribonuclease III [Fusobacterium sp. 7_1] gi|260496871|ref|ZP_05815991.1| ribonuclease III [Fusobacterium sp. 3_1_33] gi|229433281|gb|EEO43493.1| ribonuclease III [Fusobacterium sp. 7_1] gi|260196613|gb|EEW94140.1| ribonuclease III [Fusobacterium sp. 3_1_33] Length = 234 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 63/236 (26%), Positives = 114/236 (48%), Gaps = 25/236 (10%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ Sbjct: 3 NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + +A EG ++ +VS ++++R++ + F+ +S SI AD E Sbjct: 63 KSYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILADSFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+Y+D ++ A F + KQ ++ + D K+ LQE+ +F P YK+ Sbjct: 123 AILGAVYIDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPTYKLI 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA---------AEQVAAAEVLKREGI 225 GPDH F + V + + R AEQ++A + + G+ Sbjct: 183 AERGPDHMKEFEIQVIVG----------NYREKAVAKNKKKAEQLSAKALCIKLGV 228 >gi|322436776|ref|YP_004218988.1| ribonuclease III [Acidobacterium sp. MP5ACTX9] gi|321164503|gb|ADW70208.1| ribonuclease III [Acidobacterium sp. MP5ACTX9] Length = 268 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 119/232 (51%), Gaps = 26/232 (11%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE------------SYERLEFLGDRILGLLIS 56 LE +G+ FA +LL ALTH S + + E+LEF+GD LGLL + Sbjct: 19 LETLLGHRFARPNLLTLALTHRSFVYDSGQTAPENDLADPARDNEQLEFVGDAALGLLAA 78 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L F +++EGEL+ S+VS + +V LDL ++R+ K+ ++ A Sbjct: 79 ESLCRRFPASREGELTRLRASIVSRKHLGEVGTRLDLGRWLRLGHTAEKNDGRRNAALFA 138 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-----GKFRR------DAKTELQEWA 165 + VE+LIAALYLDGG+EVA FV+ A+ + G+ R D K+ LQE Sbjct: 139 NAVEALIAALYLDGGLEVARRFVEDEIVSPAIPALEQSLGEGERFAGAVGDHKSALQEML 198 Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG---LAPAQGMDCSKRAAEQV 214 A+ PEY++ SGPDH F+V V I G A AQ +K+ A+Q Sbjct: 199 QAEGLGRPEYRLIAESGPDHKRLFSVEVLIEGPDSEAIAQAEGPTKKQAQQE 250 >gi|148642236|ref|YP_001272749.1| ribonuclease III (dsRNA-specific), Rnc [Methanobrevibacter smithii ATCC 35061] gi|148551253|gb|ABQ86381.1| ribonuclease III (dsRNA-specific), Rnc [Methanobrevibacter smithii ATCC 35061] Length = 223 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 3/219 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSA 66 L ++ +R L + A TH S + Y ERLEFLGD +L +++S L+ + Sbjct: 3 LLEKFNILPKDRHLYDVAFTHGSYGTKHGLDYTYERLEFLGDSVLNMIVSEYLYKQYPDY 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+L+ + V + EL L I++ D K + + SI ADV ES + A+ Sbjct: 63 EEGKLTKLRANYVCQTALIYYSHELGLDKHIKIYGDDSKITENEVLSITADVFESFLGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +LD GIE A ++ K F D K+ ++E+ A+ V EYK+ G H+ Sbjct: 123 FLDQGIEFAKDYISKIIFPYIDAKKVFFFDYKSVIKEYGDAQ-EVDIEYKIIDECGVPHN 181 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 F + + I G G +K+ AEQ A+ + +K+ I Sbjct: 182 KTFIISILIDGKEMGVGKGKNKKEAEQAASKQAMKKLKI 220 >gi|296111745|ref|YP_003622127.1| dsRNA-specific ribonuclease RNaseIII [Leuconostoc kimchii IMSNU 11154] gi|295833277|gb|ADG41158.1| dsRNA-specific ribonuclease RNaseIII [Leuconostoc kimchii IMSNU 11154] Length = 233 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 8/221 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63 L F N LL +ALT + + + + Y+RLEFLGD ++ + ++ LF + Sbjct: 9 HLLSEFNIQFHNEELLREALTQRNYLNEHPDEPGRDYQRLEFLGDSVMQVSVAEYLFKRY 68 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S EG+L+ ++V + + +R L IR+ S+ D+ E+ I Sbjct: 69 PSWHEGQLTEMRIAMVQTRSFAHFSRVAHLNEGIRLGKGEEMSGARDRDSLLEDIWEAFI 128 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181 ALYLD G E TF+D+ A+ + F R D K+ LQE V Y+ Sbjct: 129 GALYLDQGSEAVRTFLDQTLFA-AIDTDFFDRFIDFKSRLQEKLQKNGAVDIAYRTESEK 187 Query: 182 G-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++ F V + A+G S + AE+VAA LK Sbjct: 188 QMIGNEQLFEASVSVDNRELARGTGKSIKDAEKVAARAALK 228 >gi|58700160|ref|ZP_00374668.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae] gi|58533321|gb|EAL57812.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae] Length = 183 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 63/178 (35%), Positives = 96/178 (53%) Query: 47 GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 GD +L +++S LF F KEG L+ R LV T + VA+E+ L SFI +++ R + Sbjct: 1 GDSVLNMVVSATLFKLFPEEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCN 60 Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 + +E+LI A+Y+DGG+E F+ +YW++ A +D KT LQEW Sbjct: 61 GGRCNLKNLENSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQ 120 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PEY++ ++GP H+P FT+ V I SK+ AEQ AA +L++ G Sbjct: 121 KNKLPLPEYELVKQTGPAHNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEKIG 178 >gi|220912984|ref|YP_002488293.1| ribonuclease III [Arthrobacter chlorophenolicus A6] gi|219859862|gb|ACL40204.1| Ribonuclease III [Arthrobacter chlorophenolicus A6] Length = 242 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 96/207 (46%), Gaps = 6/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 L KR+G + L ALTH S ++ + ERLEFLGD ILG ++ L+ Sbjct: 5 EELLKRLGVTI-DAGTLRLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDSLYRDNP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ R +++VS + + R L + FI + + SI AD +E+LI Sbjct: 64 DLPEGELAKRRSAVVSTRALANIGRSLGIGEFIYLGQGEKLTEGKNKASILADTMEALIG 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A Y+ IE A V + + D KT +QE A ++ T Y V +G Sbjct: 124 ATYVSNDIETARQLVMRLIGPLLKDAAVLGAGTDWKTSIQELAASRQLGTIHYAVEG-AG 182 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDH F+ V+ I G +G SK+ Sbjct: 183 PDHARTFSAVLNIGGKPYGKGTGHSKK 209 >gi|119509571|ref|ZP_01628718.1| ribonuclease III [Nodularia spumigena CCY9414] gi|119465760|gb|EAW46650.1| ribonuclease III [Nodularia spumigena CCY9414] Length = 226 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 7/214 (3%) Query: 17 FANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 F N LL++ALTH S + ++ ERLEFLGD +L + L+ + E E++ R Sbjct: 7 FQNEKLLQQALTHRSYVNENPGEKHNERLEFLGDALLTFISGEYLYTRYPEIAEDEMTRR 66 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG--GI 132 ++LV + ++ A E+ L +R+ +D ++ + ES++ A YLD I Sbjct: 67 RSALVDEKQLAKFAIEVGLDFKMRLGRGAIQDGGFQSPNLLSSAFESVVGAYYLDCDRNI 126 Query: 133 EVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDPRF 189 E + + +A+ + D+K QEW AKFG P+Y G DH P + Sbjct: 127 EKIRPIIADLFNSVPQAIMEIRSNVDSKNRFQEWVQAKFGTLLPKYITERIGGQDHAPEY 186 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + G K+ AE+ AA L Sbjct: 187 LAQVFVGEQVYGYGKARGKKEAEKQAAENALSNL 220 >gi|56708583|ref|YP_170479.1| ribonuclease III [Francisella tularensis subsp. tularensis SCHU S4] gi|110671054|ref|YP_667611.1| ribonuclease III [Francisella tularensis subsp. tularensis FSC198] gi|224457765|ref|ZP_03666238.1| ribonuclease III [Francisella tularensis subsp. tularensis MA00-2987] gi|254371212|ref|ZP_04987214.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875445|ref|ZP_05248155.1| ribonuclease III [Francisella tularensis subsp. tularensis MA00-2987] gi|81597132|sp|Q5NER3|RNC_FRATT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|123359364|sp|Q14G66|RNC_FRAT1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54112881|gb|AAV29074.1| NT02FT1862 [synthetic construct] gi|56605075|emb|CAG46188.1| Ribonuclease III [Francisella tularensis subsp. tularensis SCHU S4] gi|110321387|emb|CAL09571.1| Ribonuclease III [Francisella tularensis subsp. tularensis FSC198] gi|151569452|gb|EDN35106.1| hypothetical protein FTBG_00981 [Francisella tularensis subsp. tularensis FSC033] gi|254841444|gb|EET19880.1| ribonuclease III [Francisella tularensis subsp. tularensis MA00-2987] gi|282159811|gb|ADA79202.1| Ribonuclease III [Francisella tularensis subsp. tularensis NE061598] Length = 230 Score = 211 bits (537), Expect = 9e-53, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 9/221 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS +GY F + +LL +ALTH S +++YERLEFLGD +L +I+ +L+ F Sbjct: 4 EYSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFI 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS + LV T +Q+A L + +I + + I DV E++I Sbjct: 61 DLAEGKLSQLRSKLVKGATLAQLASSLKMDEYIILGASE--QGGHKREKILEDVFEAVIG 118 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD + K+++ + + +D+K++LQE PEY + Sbjct: 119 AIYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 178 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G DH+ +FTVV L + S++ AEQ A ++++ Sbjct: 179 GKDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIE 219 >gi|42766|emb|CAA26504.1| unnamed protein product [Escherichia coli] Length = 227 Score = 211 bits (537), Expect = 9e-53, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 95/170 (55%), Gaps = 5/170 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAK 168 +LI ++LD I+ + +++ R + G ++D KT LQE+ + Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGR 167 >gi|193215269|ref|YP_001996468.1| ribonuclease III [Chloroherpeton thalassium ATCC 35110] gi|193088746|gb|ACF14021.1| Ribonuclease III [Chloroherpeton thalassium ATCC 35110] Length = 269 Score = 210 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 65/210 (30%), Positives = 95/210 (45%), Gaps = 8/210 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSS------ISHSYQESYERLEFLGDRILGLLISTLLFN 61 +E G+ +N E ALTH S S S ERLEFLGD +L L+++ L+ Sbjct: 42 EIESLTGFPISNVIHYETALTHRSAIDLNVYSKKKFVSNERLEFLGDAVLDLVVAECLYT 101 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+L+ + LV+A T + AR++ L S + VS + AD E+ Sbjct: 102 RFPDYDEGKLTKLRSQLVNARTLASFARKIHLGSLLIVSEAAEAIGVRDSETTLADAFEA 161 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A+YLD F++K + + + K+ L E+A A P Y V Sbjct: 162 LVGAIYLDSDYLQTKRFLEKKILEGIDFRELSSTDNNFKSVLLEYAQAHHLEIPTYTVID 221 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H FTV V I +G+ SK+ Sbjct: 222 EEGPSHKKVFTVAVYIGDEMLGKGVGRSKK 251 >gi|300172910|ref|YP_003772075.1| ribonuclease III [Leuconostoc gasicomitatum LMG 18811] gi|299887288|emb|CBL91256.1| Ribonuclease III [Leuconostoc gasicomitatum LMG 18811] Length = 233 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 9/229 (3%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 MS + L F + SLL++ALT + + +Q+ Y+RLEFLGD ++ + + Sbjct: 1 MSQDSFKKYLLTEFNIQFNDDSLLQEALTQRNYLNEHQDESGRDYQRLEFLGDSVMQVSV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + LF + + EG+L+ ++V + + +R + L IR+ S+ Sbjct: 61 AEYLFKRYPNWHEGQLTEMRIAMVQTRSFAHFSRVVHLNEGIRLGKGEEMSGARDRDSLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTP 173 D+ E+ I ALYLD G+E F+D+ A+ + F R D K+ LQE V Sbjct: 121 EDIWEAFIGALYLDQGLEAVSVFLDQTLFA-AIDTDFFDRFIDFKSRLQEKLQKNGAVDI 179 Query: 174 EYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y+ + F + + A+G S + AE+ AA LK Sbjct: 180 YYRTESEQPLAGNTQLFEASISVDDHELARGTGKSIKDAEKAAARTALK 228 >gi|237740802|ref|ZP_04571283.1| ribonuclease III [Fusobacterium sp. 2_1_31] gi|229422819|gb|EEO37866.1| ribonuclease III [Fusobacterium sp. 2_1_31] Length = 234 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 60/199 (30%), Positives = 104/199 (52%), Gaps = 6/199 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 LE ++ Y F NR+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ Sbjct: 3 NLLDLEHKLNYYFNNRNLLKTALLHKSLGNEKKEYKNQNNERLELLGDAVLDLIVAEYLY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ SA EG ++ +VS ++++R++DL F+ +S SI AD E Sbjct: 63 RNYKSASEGTIAKLKAMIVSEPILAKISRQIDLGKFLMLSKGEILSGGRNRESILADAFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+Y+D +E A +F + +Q ++ + D K+ LQE+ F P Y++ Sbjct: 123 AVLGAVYMDSNLEEARSFALGHIEQYITHIEEDEDILDFKSILQEYVQKNFKTVPTYELI 182 Query: 179 FRSGPDHDPRFTVVVEISG 197 GPDH F + V + Sbjct: 183 SEKGPDHMKEFEIQVVVGN 201 >gi|19553272|ref|NP_601274.1| ribonuclease III [Corynebacterium glutamicum ATCC 13032] gi|62390909|ref|YP_226311.1| ribonuclease III [Corynebacterium glutamicum ATCC 13032] gi|28201879|sp|Q8NNV6|RNC_CORGL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|21324844|dbj|BAB99467.1| dsRNA-specific ribonuclease [Corynebacterium glutamicum ATCC 13032] gi|41326248|emb|CAF20410.1| RIBONUCLEASE III [Corynebacterium glutamicum ATCC 13032] Length = 247 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 6/226 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 A+ + L +G R LL ALTH S ++ + ERLEFLGD +LGL ++ L Sbjct: 19 DAVDHQPLLDHLGVDIQ-RDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLSVANKL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S+ E ++S S+VS + +ARE+DL + I + SI AD Sbjct: 78 YEQYPSSPESDVSKMRASIVSRYGLADIAREIDLGNHILLGKGELLTEGRSKDSILADTT 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177 E+L A++ G E A + + + + + +D KT LQE + EY Sbjct: 138 EALFGAIFRQHGFETARDVILRLFAYKIDNASARGIHQDWKTTLQEELAQRKRPMAEYSA 197 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T GPDHD FT +V + G +G +K+ AEQ AA + ++ Sbjct: 198 TSV-GPDHDLVFTAIVTLEGEEMGRGEGPNKKLAEQEAAHQAFRKL 242 >gi|269214809|ref|ZP_05987185.2| ribonuclease III [Neisseria lactamica ATCC 23970] gi|269208949|gb|EEZ75404.1| ribonuclease III [Neisseria lactamica ATCC 23970] Length = 267 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 39 HAAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPK 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 96 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + R ++ +DAKT LQE A+ P+Y++ + G Sbjct: 156 VSFDADFNTAEKVVRHLFADRVRRADFQNQAKDAKTALQEALQARRFALPKYRIEEQIGH 215 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 216 ANDSMFVISCDLGELGFVCRAKGTSR 241 >gi|34764313|ref|ZP_00145147.1| Ribonuclease III [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741211|ref|ZP_04571692.1| ribonuclease III [Fusobacterium sp. 4_1_13] gi|27885913|gb|EAA23255.1| Ribonuclease III [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229430743|gb|EEO40955.1| ribonuclease III [Fusobacterium sp. 4_1_13] Length = 234 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 103/199 (51%), Gaps = 6/199 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ Sbjct: 3 NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ +A EG ++ +VS ++++R++ + F+ +S SI AD E Sbjct: 63 KNYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILADSFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+Y+D ++ A F + KQ ++ + D K+ LQE+ +F P Y++ Sbjct: 123 AILGAVYMDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPTYELI 182 Query: 179 FRSGPDHDPRFTVVVEISG 197 GPDH F + V + Sbjct: 183 AERGPDHMKEFEIQVIVGN 201 >gi|299136236|ref|ZP_07029420.1| ribonuclease III [Acidobacterium sp. MP5ACTX8] gi|298602360|gb|EFI58514.1| ribonuclease III [Acidobacterium sp. MP5ACTX8] Length = 289 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 71/256 (27%), Positives = 115/256 (44%), Gaps = 39/256 (15%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----------------------SYERL 43 L++ +G+ F LL ALTH S ++ + E+L Sbjct: 16 IDELQRLLGHRFTRPELLALALTHRSHTYEARHGVPTVILPAHPDQRDQRNPPGTDNEQL 75 Query: 44 EFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 EFLGD ILGL+++ L+ F + EGEL+ + LVS ++V L+L + + Sbjct: 76 EFLGDSILGLVVTEALYREFPQSSEGELTRLRSILVSRARMAEVGVALELGEQLFLGKSA 135 Query: 104 RKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTFVDKYWKQRALKSGKFR------ 154 ++ ++ A+ VE++IAA+YLD G++ V++Y + L + + Sbjct: 136 DQNGGRKKPALLANAVEAIIAAVYLDAGAKGLKAVRAIVERYVLEPDLDTMRAALAGEEG 195 Query: 155 ----RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA----PAQGMDC 206 RD KT LQE A Y T ++GP H RF+V ++ G A A Sbjct: 196 RGALRDHKTVLQERVQASGLGRLRYVDTDQTGPAHQRRFSVEAQLEGEAGTRTLAAAEGS 255 Query: 207 SKRAAEQVAAAEVLKR 222 +K+ A+Q AA L + Sbjct: 256 NKKEAQQRAAELALAQ 271 >gi|329114470|ref|ZP_08243232.1| Ribonuclease 3 [Acetobacter pomorum DM001] gi|326696546|gb|EGE48225.1| Ribonuclease 3 [Acetobacter pomorum DM001] Length = 253 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 77/219 (35%), Positives = 111/219 (50%), Gaps = 12/219 (5%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISH-----------SYQESYERLEFLGDRI 50 + R LE R+GY F N LL++ALTH S +H S ERLEF+GDR+ Sbjct: 20 ARFRLEELEVRLGYRFVNPDLLQEALTHRSAAHQKAGGRKRQKAKGAGSNERLEFIGDRV 79 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 LGLL++ L F + +EG L R LVS + +++A LDL + V++ + Sbjct: 80 LGLLMAEWLLERFPNEQEGALGSRLAHLVSRVSLAEIADRLDLPQSLTVAAHEARAGVQT 139 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 ++ AD +E+++ A++LDGG+E A V +W+ +D KT LQEW + Sbjct: 140 AANVVADALEAVLGAVFLDGGLEPARQMVRDWWRSALDAQAHPPKDPKTALQEWVLGRGQ 199 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 P Y+ GP H P F V V GL +G SKR Sbjct: 200 SLPVYETIGADGPSHAPLFVVRVTAGGL-FGEGRAGSKR 237 >gi|254673607|emb|CBA09131.1| ribonuclease III [Neisseria meningitidis alpha275] Length = 267 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++KR+GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 39 HAAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPK 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 96 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + R + +D KT LQE A+ P+Y++ + G Sbjct: 156 VSFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 215 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 +D F V ++ L + S+ Sbjct: 216 ANDSMFVVSCDLGELGFVCRAKGTSR 241 >gi|328777204|ref|XP_394444.3| PREDICTED: ribonuclease 3 [Apis mellifera] Length = 1290 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 107/228 (46%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T S ++ S +RLEFLGD +L L++S L+ + Sbjct: 1010 KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKY 1069 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ +T + V +L + + + T +AD++E+ Sbjct: 1070 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNP----KAELKTKDRADLLEAF 1125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPE 174 + ALY+D G+E F D + R + D K++LQ+ P Sbjct: 1126 LGALYVDKGLEYCRVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1185 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV GP + +TV V G A+ S + AE +A E L++ Sbjct: 1186 YKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEK 1233 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 6/137 (4%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T SSI+H ERLEFLGD ++ L S LF+ F +EG L+ ++V + + + Sbjct: 861 TESSIAH-----NERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVL 915 Query: 88 ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147 A++L+L ++ + + A+ E+L+ +L+LDGGIEVA + + Sbjct: 916 AKKLNLEEYMLYAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKDE 975 Query: 148 LKSGKFRRDA-KTELQE 163 K + K LQE Sbjct: 976 EDLAKVWVNYPKHPLQE 992 >gi|258541744|ref|YP_003187177.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-01] gi|256632822|dbj|BAH98797.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-01] gi|256635879|dbj|BAI01848.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-03] gi|256638934|dbj|BAI04896.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-07] gi|256641988|dbj|BAI07943.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-22] gi|256645043|dbj|BAI10991.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-26] gi|256648098|dbj|BAI14039.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-32] gi|256651151|dbj|BAI17085.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654142|dbj|BAI20069.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-12] Length = 238 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 78/219 (35%), Positives = 111/219 (50%), Gaps = 12/219 (5%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISH-----------SYQESYERLEFLGDRI 50 + R LE R+GY F N LL++ALTH S +H S ERLEF+GDR+ Sbjct: 5 ARFRLEELEVRLGYRFVNPDLLQEALTHRSAAHQKAGGRKRQKAKGAGSNERLEFIGDRV 64 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 LGLL++ L F + +EG L R LVS + +++A LDL + V++ + Sbjct: 65 LGLLMAEWLLERFPNEQEGALGSRLAHLVSRVSLAEIADRLDLPQSLTVAAHEARAGVQT 124 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 ++ AD +E+++ A++LDGG+E A V +WK +D KT LQEW + Sbjct: 125 AANVVADALEAVLGAVFLDGGLEPARQMVRDWWKSALDAQAHPPKDPKTALQEWVLGRGQ 184 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 P Y+ GP H P F V V GL +G SKR Sbjct: 185 SLPVYETIGADGPSHAPLFVVRVTAGGL-FGEGRAGSKR 222 >gi|319410059|emb|CBY90393.1| ribonuclease III [Neisseria meningitidis WUE 2594] Length = 310 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 82 HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 138 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 139 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 198 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + +R + +D KT LQE A+ P+Y++ + G Sbjct: 199 VSFDADFNTAEKVVRHLFAERVRRVDFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 258 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 259 ANDSMFVISCDLGELGFVCRAKGTSR 284 >gi|256846347|ref|ZP_05551804.1| ribonuclease III [Fusobacterium sp. 3_1_36A2] gi|256718116|gb|EEU31672.1| ribonuclease III [Fusobacterium sp. 3_1_36A2] Length = 234 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 103/199 (51%), Gaps = 6/199 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ Sbjct: 3 NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ +A EG ++ +VS ++++R++ + F+ +S SI AD E Sbjct: 63 KNYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILADSFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+Y+D ++ A F + KQ ++ + D K+ LQE+ +F P Y++ Sbjct: 123 AILGAVYMDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPTYELI 182 Query: 179 FRSGPDHDPRFTVVVEISG 197 GPDH F + V + Sbjct: 183 AERGPDHMKEFEIQVIVGN 201 >gi|297250746|ref|ZP_06864987.2| ribonuclease III [Neisseria polysaccharea ATCC 43768] gi|296838254|gb|EFH22192.1| ribonuclease III [Neisseria polysaccharea ATCC 43768] Length = 267 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++KR+GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 39 HAAIQKRLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPK 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 96 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + R + +D KT LQE A+ P+Y++ + G Sbjct: 156 VSFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGY 215 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 +D F V ++ L + S+ Sbjct: 216 ANDSMFVVSCDLGELGFVCRAKGTSR 241 >gi|296328081|ref|ZP_06870615.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154857|gb|EFG95640.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 234 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 103/199 (51%), Gaps = 6/199 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ Sbjct: 3 NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ +A EG ++ +VS ++++R++ + F+ +S SI AD E Sbjct: 63 KNYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILADSFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+Y+D ++ A F + KQ ++ + D K+ LQE+ +F P Y++ Sbjct: 123 AILGAVYIDSNLDEARVFALSHIKQYIDHIEENEDILDFKSILQEYVQKEFKTVPTYELV 182 Query: 179 FRSGPDHDPRFTVVVEISG 197 GPDH F + V + Sbjct: 183 AERGPDHMKEFEIQVIVGN 201 >gi|121634484|ref|YP_974729.1| ribonuclease III [Neisseria meningitidis FAM18] gi|120866190|emb|CAM09930.1| putative ribonuclease III [Neisseria meningitidis FAM18] Length = 267 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 39 HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 96 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + R ++ +D KT LQE A+ P+Y++ + G Sbjct: 156 VSFDADFNTAEKVVRHLFADRVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 215 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 +D F V ++ L + S+ Sbjct: 216 ANDSMFVVSCDLGELGFVCRAKGTSR 241 >gi|298369788|ref|ZP_06981104.1| ribonuclease III [Neisseria sp. oral taxon 014 str. F0314] gi|298281248|gb|EFI22737.1| ribonuclease III [Neisseria sp. oral taxon 014 str. F0314] Length = 302 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 104/207 (50%), Gaps = 6/207 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +++R+G+ F LL++ALTH S + ++ ER EF+GD IL I+ +LF+ F Sbjct: 74 HQAIQRRLGHKFVRIELLQQALTHRSFN---AKNNERFEFVGDAILNYSIAKMLFDAFPK 130 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS +LV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 131 LTEGELSRLRANLVNEHVLAEIALEMNIGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 190 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D G A V + +R + +D KT LQE A+ P+Y++ + G Sbjct: 191 VSFDAGFAAAEEVVRHLFAERVKRVDFKNQGKDNKTVLQEALQARHLPLPKYRIEEQVGG 250 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKR 209 D RF V ++ L + +++ Sbjct: 251 VKDSRFVVSCDLGELGFICRAQGTNRK 277 >gi|118617606|ref|YP_905938.1| ribonuclease III [Mycobacterium ulcerans Agy99] gi|118569716|gb|ABL04467.1| ribonuclease III Rnc [Mycobacterium ulcerans Agy99] Length = 243 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 64/194 (32%), Positives = 96/194 (49%), Gaps = 8/194 (4%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 L+ ALTH S ++ + ERLEFLGD +LGL I+ LF+ EG+L+ S+ Sbjct: 19 ELVTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDELFHRHPERSEGDLAKLRASV 78 Query: 79 VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 V+ + + VAR L L + + + + +SI AD +ESL+ A+YL G+EVA Sbjct: 79 VNTQALADVARHLSDHGLGAHMLLGRGEANTGGADKSSILADGMESLLGAIYLHHGMEVA 138 Query: 136 GTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + + + + D KT LQE ++ P Y VT +GPDH FT VV Sbjct: 139 REAILRIFGPLLDAAPTLGAGLDWKTSLQELTASRSLGAPSYAVTS-TGPDHHKEFTAVV 197 Query: 194 EISGLAPAQGMDCS 207 ++ G+ S Sbjct: 198 VVNNTEYGSGVGRS 211 >gi|326387678|ref|ZP_08209284.1| ribonuclease III [Novosphingobium nitrogenifigens DSM 19370] gi|326207724|gb|EGD58535.1| ribonuclease III [Novosphingobium nitrogenifigens DSM 19370] Length = 233 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 114/221 (51%), Gaps = 3/221 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + + L G+ + L +ALTH S+ + Y+RLEFLGDR+LGL ++ L Sbjct: 13 LDPASLAFLTAVFGHEPIRQDLWHEALTHGSLGEA--RDYQRLEFLGDRVLGLAVAEWLH 70 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 SA EG+LS R N+LVS ETC+ VAR L +A +R+ R D + +I DV+E Sbjct: 71 GD-SSAAEGKLSQRLNALVSRETCADVARTLGIAPHMRLGKQARDDGGADSDNILGDVME 129 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI AL+L+ G A FV + W R+ K LQEWA P Y + R Sbjct: 130 ALIGALFLERGFPAARDFVRRAWAAPMAAGAGQRKHPKAALQEWAAGNKRKPPIYTLVAR 189 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDH FTV V + G+ SK+ AE AA E +K Sbjct: 190 EGPDHAATFTVSVTVKGVGEMTARGSSKQEAETSAAREFMK 230 >gi|241888745|ref|ZP_04776051.1| ribonuclease III [Gemella haemolysans ATCC 10379] gi|241864421|gb|EER68797.1| ribonuclease III [Gemella haemolysans ATCC 10379] Length = 237 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + L + G+ + + +HSS ++ + +YERLEFLGD ++ L S LF Sbjct: 10 LNNLNEEYGFNLKFSENFKNSFSHSSYTNEKRIAKHLNYERLEFLGDAVVELTTSEFLFK 69 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EGEL+ S+V +T + A +L L I + K ++ AD+ ES Sbjct: 70 KFSELPEGELTKLRASIVCEKTLVKYALQLSLDKCIYLGKGEEKMGGRSRAALLADIFES 129 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFR 180 A+YL+ +EV TF++ D KT LQE+ EY V Sbjct: 130 FTGAMYLESNLEVVKTFLNNTLFTEVQDLEYHSFVDYKTILQEYISKIKLGEIEYVVLDS 189 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H FT V I G +K+ +EQ++A + L++ Sbjct: 190 SGPSHSKTFTSAVLIGRKQYGSGTATTKKESEQLSAKQALEKL 232 >gi|85057423|ref|YP_456339.1| dsRNA-specific ribonuclease [Aster yellows witches'-broom phytoplasma AYWB] gi|123518419|sp|Q2NJY3|RNC_AYWBP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|84789528|gb|ABC65260.1| dsRNA-specific ribonuclease [Aster yellows witches'-broom phytoplasma AYWB] Length = 237 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 9/225 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIST 57 M ++ L + + N L ++ALTHSS S+ QE ERLEFLGD I+GLL++ Sbjct: 1 MKNIQI--LFQTLNIFPKNLVLYKQALTHSSYSNEQTPPQEDNERLEFLGDAIVGLLMAD 58 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L++ EG ++ + V ++ + A++++L +++ + K+ I AD Sbjct: 59 YLYSQ-SKEDEGIMTKKRAQAVCEKSLTIYAQKIELQNYLLLGKGE-KNKDFNAKGIMAD 116 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+L A+YLD G A L + D KT+LQE ++ T +YK+ Sbjct: 117 TFEALFGAIYLDLGYLTAKKVFHNIVLPH-LAKTIYIIDFKTQLQEIVQSEKK-TIQYKI 174 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H F V + G +K++AEQ AA + L + Sbjct: 175 VQEQGPAHSKNFVAEVYLEKNLLGTGEGSTKKSAEQKAAQQALSK 219 >gi|293410983|ref|ZP_06654559.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B354] gi|291471451|gb|EFF13935.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B354] Length = 189 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 3/173 (1%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD IL +I+ L++ F EG++S +LV T +++ARE +L +R+ Sbjct: 1 ERLEFLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLG 60 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAK 158 K SI AD VE+LI ++LD I+ + +++ R + G ++D K Sbjct: 61 PGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPK 120 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 T LQE+ + P Y V G HD FT+ ++SGL P G S+R Sbjct: 121 TRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 173 >gi|15606266|ref|NP_213645.1| RNase III [Aquifex aeolicus VF5] gi|7531189|sp|O67082|RNC_AQUAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|83753752|pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.5-Angstrom Resolution gi|83753753|pdb|1YYK|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.5-Angstrom Resolution gi|83753764|pdb|1YYW|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.8-Angstrom Resolution gi|83753765|pdb|1YYW|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.8-Angstrom Resolution gi|83753766|pdb|1YYW|C Chain C, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.8-Angstrom Resolution gi|83753767|pdb|1YYW|D Chain D, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.8-Angstrom Resolution gi|160877674|pdb|2NUE|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Ds-Rna At 2.9-Angstrom Resolution gi|160877675|pdb|2NUE|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Ds-Rna At 2.9-Angstrom Resolution gi|160877678|pdb|2NUF|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Ds-Rna At 2.5-Angstrom Resolution gi|160877679|pdb|2NUF|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Ds-Rna At 2.5-Angstrom Resolution gi|160877684|pdb|2NUG|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Ds-Rna At 1.7-Angstrom Resolution gi|160877685|pdb|2NUG|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Ds-Rna At 1.7-Angstrom Resolution gi|2983469|gb|AAC07049.1| RNase III [Aquifex aeolicus VF5] Length = 221 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 119/221 (53%), Gaps = 14/221 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LEK++GY F ++SLLEKALTH S S +E YE LEFLGD ++ I LL + + Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG LS L+S E + +A++L+L FIR+ +I DV E+L AA Sbjct: 62 KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRG------KINETIIGDVFEALWAA 115 Query: 126 LYLDGGIEV--AGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +Y+D G + K +K+ A+K G+ ++D KT LQE ++ PEY++ Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISV 175 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H +F V +I G SK+ AEQ AA E++K Sbjct: 176 EGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIK 215 >gi|296283699|ref|ZP_06861697.1| ribonuclease III [Citromicrobium bathyomarinum JL354] Length = 223 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 80/211 (37%), Positives = 116/211 (54%), Gaps = 2/211 (0%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 G+A + +L +ALTH S+ Y+RLEFLGDR+LGL I+ LF + +SA EG L+ Sbjct: 15 GFAARDEALWNEALTHGSLGEG--RDYQRLEFLGDRVLGLAIAEWLFENQNSASEGTLAQ 72 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 R N+LVS C++VAR + + +R+ R+D + ++I DV+ESL+ A + G E Sbjct: 73 RLNALVSKGACAKVARSIGVPDHLRLGRQAREDGGAQSSNILGDVMESLLGAQLREDGFE 132 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 A V W+ + K+ LQEWA PEY + RSGPDH RFTV V Sbjct: 133 SARALVRALWRDAVEGDAGRAKHPKSALQEWAAGNRRRPPEYALIDRSGPDHAARFTVRV 192 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + + A+ SK+ AE AA +++ G Sbjct: 193 SVKNVGDAEATANSKQEAETAAAKAFMEQYG 223 >gi|319784504|ref|YP_004143980.1| ribonuclease III [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170392|gb|ADV13930.1| ribonuclease III [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 251 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 85/198 (42%), Positives = 120/198 (60%), Gaps = 1/198 (0%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 ++ + GY F + LLE ALTHSS + + +RLEFLGDR+LGL+++ +LF F A E Sbjct: 15 VKAKTGYVFKDIRLLETALTHSSAVKAAT-NNQRLEFLGDRVLGLVVADMLFEKFPDAPE 73 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GE++ RFN+LV A TCS++ E+ L +R S L+ + AD VE+LIAA+Y+ Sbjct: 74 GEIAPRFNALVDARTCSEIGIEMQLEDLVRADSALKMRSRGSGGNYLADAVEALIAAVYV 133 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGGIE A FV +YW+ R+ + K++LQEW + PEY + R GPDH P Sbjct: 134 DGGIEAARRFVLRYWEPRSHTVIAKPLNPKSDLQEWIAKTSDIRPEYVIDKREGPDHQPV 193 Query: 189 FTVVVEISGLAPAQGMDC 206 FTV +++ G AP G Sbjct: 194 FTVSLQVRGFAPISGTGG 211 >gi|161869625|ref|YP_001598793.1| ribonuclease III [Neisseria meningitidis 053442] gi|161595178|gb|ABX72838.1| ribonuclease III [Neisseria meningitidis 053442] Length = 310 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 82 HAAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPK 138 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+D+ + + + K SI AD +E++ AA Sbjct: 139 LTEGELSRLRASLVNEGVLAEMAAEMDVGEGLYLGAGELKSGGFRRPSILADAMEAMFAA 198 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + R + +D KT LQE A+ P+Y++ + G Sbjct: 199 VSFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 258 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 +D F + ++ L S+ Sbjct: 259 ANDSMFVISCDLGELGFVCYAKGTSR 284 >gi|329120775|ref|ZP_08249436.1| ribonuclease III [Neisseria bacilliformis ATCC BAA-1200] gi|327460145|gb|EGF06483.1| ribonuclease III [Neisseria bacilliformis ATCC BAA-1200] Length = 316 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 67/218 (30%), Positives = 107/218 (49%), Gaps = 7/218 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ IG+ FA+ +LL++ALTH S S + ER EF+GD IL ++ +LF+ + Sbjct: 86 RLQAAIGHTFADPALLDRALTHRSFSSRH---NERFEFVGDAILNYTVARMLFDAYPQLP 142 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG LS +LV+ ++ A L++ + + + K SI AD +E++ AA+ Sbjct: 143 EGRLSRLRANLVNQTVLAETAAALNIGDALLLGAGELKSGGFRRPSILADAMEAVFAAVS 202 Query: 128 LDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + + +R K +DAKT LQE A+ P+Y++ + G Sbjct: 203 FDADFAAAEAVVRRLFAERVANIDCGEKEAKDAKTRLQEALQAQRFALPKYRIDKQEGEG 262 Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221 FTV ++ L + +RAAEQ AA L+ Sbjct: 263 SGAWFTVSCDLGELGFVSTAQAAGRRAAEQEAAKTALE 300 >gi|262068132|ref|ZP_06027744.1| ribonuclease III [Fusobacterium periodonticum ATCC 33693] gi|291378220|gb|EFE85738.1| ribonuclease III [Fusobacterium periodonticum ATCC 33693] Length = 234 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 59/198 (29%), Positives = 103/198 (52%), Gaps = 6/198 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 LE ++ Y F NR+LL+ AL H S+ + +E + ERLE LGD +L L+++ L+ Sbjct: 3 NLLDLEHKLNYYFNNRNLLKTALLHKSLGNEKKEYKNQNNERLELLGDAVLDLIVAEYLY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ SA EG ++ +VS ++++R++ L F+ +S SI AD E Sbjct: 63 RNYKSASEGTIAKLKAMIVSEPILAKISRQIGLGKFLMLSKGEILSGGRNRESILADAFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+Y+D +E A +F + +Q ++ + D K+ LQE+ F P Y++ Sbjct: 123 AVLGAVYMDSNLEDARSFALGHIEQYITHIEEDEDILDFKSILQEYVQKNFRTVPIYELI 182 Query: 179 FRSGPDHDPRFTVVVEIS 196 GPDH F + V + Sbjct: 183 SEKGPDHMKEFEIQVVVG 200 >gi|322803055|gb|EFZ23143.1| hypothetical protein SINV_00854 [Solenopsis invicta] Length = 1447 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T S ++ S +RLEFLGD +L L++S L+ Sbjct: 990 KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1049 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ +T + V +L + + + T +AD++E+ Sbjct: 1050 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNP----KAELKTKDRADLLEAF 1105 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPE 174 + ALY+D G++ F D + R + D K++LQ+ P Sbjct: 1106 LGALYVDKGLKYCHIFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1165 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV GP + +TV V G A S + AE +A E L++ Sbjct: 1166 YKVIECKGPTNTRVYTVAVYFQGKRLATASGHSIQEAEMNSAKEALEK 1213 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T SSI+H ERLEFLGD ++ L S LF+ F +EG L+ ++V + + + Sbjct: 841 TESSIAH-----NERLEFLGDAVVEFLTSIHLFHMFPELEEGGLATYRAAIVQNQHLAVL 895 Query: 88 ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147 A++L+L ++ + + A+ E+L+ +L+LDGGIEVA + + Sbjct: 896 AKKLNLEEYMLYAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKGE 955 Query: 148 LKSGKFRRDAKT-ELQE 163 K + LQE Sbjct: 956 EDLAKVWVNYPRHPLQE 972 >gi|332638233|ref|ZP_08417096.1| ribonuclease III [Weissella cibaria KACC 11862] Length = 232 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 12/227 (5%) Query: 6 YSTLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57 + L+ + F + SLLE+ALT ++ + + Y+RLEFLGD ++ + Sbjct: 2 FKQLQAELALSYNIHFNDVSLLEEALTQANYINEHPNYTGNDYQRLEFLGDAVMQQSTAV 61 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF + EG L+ S+V + ++REL L ++++ S+ D Sbjct: 62 YLFKRYPEWDEGRLTELRISMVQTRAFAALSRELHLDQYVQLGRGEELSGARNRDSLLED 121 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEY 175 + E+ I AL+LD G +V F+ + + G + R D K++LQE V Y Sbjct: 122 LWEAFIGALFLDQGQDVVMHFLGDIMFNK-IDEGFYDRFVDYKSKLQEHLQRHGSVKITY 180 Query: 176 KVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +++ FTV V ++ A G S + AE+VAA + Sbjct: 181 TKLGERPVENNEQIFTVQVAVNDQVLATGEGKSTKEAEKVAARAAYQ 227 >gi|256384023|gb|ACU78593.1| ribonuclease III [Mycoplasma mycoides subsp. capri str. GM12] gi|256384855|gb|ACU79424.1| ribonuclease III [Mycoplasma mycoides subsp. capri str. GM12] gi|296455406|gb|ADH21641.1| ribonuclease III [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 232 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 113/226 (50%), Gaps = 6/226 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + ++ N L +ALTH+S ++ ++ SY+RLEFLGD IL + +S LF Sbjct: 1 MNIKNFFEKYNIKINNEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFF 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ EGEL+ S V ET +VA++++L + +++ SI ADV E+ Sbjct: 61 NYSKLSEGELTRLRASTVREETLFRVAKDINLGALVKLGHGEYITKGYEKPSILADVFEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTF 179 L AA+YLD + T++D+ + S +D K+ELQE ++ +Y + Sbjct: 121 LTAAIYLDQKEDGLVTWLDQTLFKYIKDSNFINDTKDFKSELQELLQSEKRSDLKYIIEK 180 Query: 180 RS--GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ +TV V ++G G SK+ AEQ AA++ L + Sbjct: 181 EDFFANENKILYTVSVNLNGQKFGVGKGFSKQEAEQNAASDCLSKL 226 >gi|331703478|ref|YP_004400165.1| ribonuclease III [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802033|emb|CBW54187.1| Ribonuclease III [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 232 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 113/226 (50%), Gaps = 6/226 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + ++ N L +ALTH+S ++ ++ SY+RLEFLGD IL + +S LF Sbjct: 1 MNIKNFFEKYNIKINNEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFF 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ EGEL+ S V ET +VA++++L + +++ SI ADV E+ Sbjct: 61 NYSKLSEGELTRLRASTVREETLFRVAKDINLGALVKLGHGEYITKGYEKPSILADVFEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTF 179 L AA+YLD + T++D+ + S +D K+ELQE ++ +Y + Sbjct: 121 LTAAIYLDQKEDGLVTWLDQTLFKYIKDSNFINDTKDFKSELQELLQSEKRSDLKYIIEK 180 Query: 180 RS--GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ +TV V ++G G SK+ AEQ AA++ L + Sbjct: 181 EDFFANENKILYTVSVNLNGQKFGVGKGFSKQEAEQNAASDCLSKL 226 >gi|241895655|ref|ZP_04782951.1| dsRNA-specific ribonuclease [Weissella paramesenteroides ATCC 33313] gi|241871022|gb|EER74773.1| dsRNA-specific ribonuclease [Weissella paramesenteroides ATCC 33313] Length = 232 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 107/226 (47%), Gaps = 10/226 (4%) Query: 6 YSTLEKRI----GYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 + L+ + F + LLE+ALT ++ + + Y+RLEFLGD ++ + Sbjct: 2 FKQLQADLATDHHIHFNDLKLLEEALTQANYINEHPGYKGGDYQRLEFLGDAVMQQSTAV 61 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF F + EG L+ S+V + ++REL L ++++ S+ D Sbjct: 62 YLFKRFPNWDEGRLTELRISMVQTRAFAALSRELHLDRYVQLGRGEELSGARNRDSLLED 121 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY- 175 + E+ I AL+LD G EV F+++ + + D K++LQE+ V Y Sbjct: 122 LWEAFIGALFLDQGQEVVMNFLEEMMFVKIDEGFYDQFVDYKSKLQEYLQRHGTVKIAYT 181 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K+ ++ +++ FT+ V + G A G S + AE++AA + + Sbjct: 182 KLDEQAISNNEQVFTIQVSVDGKPLATGEGKSTKDAEKMAARKAYQ 227 >gi|83319588|ref|YP_424465.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535692|sp|Q2SRZ8|RNC_MYCCT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|83283474|gb|ABC01406.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 232 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 6/226 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + ++ ++ + ++ALTH+S ++ + SY+RLEFLGD IL + +S LF Sbjct: 1 MNIKNFFEKYNIKINDQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYVSKFLFF 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H+ EGEL+ +S V E+ S++A++++L IR+ SI AD+ E+ Sbjct: 61 HYSKLGEGELTRLRSSTVREESLSRIAKDINLGQLIRLGHGELMTKGYEKQSILADIFEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L AA+Y+D + ++++ + +D K+ELQE ++ +Y + Sbjct: 121 LTAAVYIDQNEDGLLIWLEQTLFKYMKDPTFINVTKDFKSELQELLQSEKRSDLKYIIEN 180 Query: 180 RSG--PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ +TV V + G G SK+ AEQ AA++ L + Sbjct: 181 EEFFVNENKTLYTVSVNLDGQKFGVGKGYSKQEAEQNAASDCLSKL 226 >gi|254455346|ref|ZP_05068775.1| ribonuclease III [Candidatus Pelagibacter sp. HTCC7211] gi|207082348|gb|EDZ59774.1| ribonuclease III [Candidatus Pelagibacter sp. HTCC7211] Length = 220 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 84/218 (38%), Positives = 122/218 (55%), Gaps = 3/218 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y +LEK+I F N +LL ++LTH S H+ ++ E++EFLGDR+LGL+I+ L + Sbjct: 4 NYQSLEKKINIKFKNTNLLIQSLTHKS--HNSLKNNEKIEFLGDRVLGLVIAKKLLEIYP 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 KEG L +F SLV+ TC ++A+ ++L +I ++ +L I +D E+LI Sbjct: 62 DEKEGILDKKFASLVNKRTCLEIAKNINLEKYI-LTFNLNNKKIKIEDKIISDCCEALIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 ALYLD G+ + + WK KS + DAKT+LQE A F P YK+ +GP Sbjct: 121 ALYLDKGLNITEKIILDLWKNHIKKSVVTQIDAKTKLQELALKNFKKLPIYKLISNTGPR 180 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H P F V V++ + SK+ AEQ AA E LK Sbjct: 181 HKPLFKVGVKLPNTKYFIALGKSKKDAEQNAAIECLKN 218 >gi|183981795|ref|YP_001850086.1| ribonuclease III Rnc [Mycobacterium marinum M] gi|183175121|gb|ACC40231.1| ribonuclease III Rnc [Mycobacterium marinum M] Length = 241 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 64/194 (32%), Positives = 96/194 (49%), Gaps = 8/194 (4%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 L+ ALTH S ++ + ERLEFLGD +LGL I+ LF+ EG+L+ S+ Sbjct: 17 ELVTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDELFHRHPERSEGDLAKLRASV 76 Query: 79 VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 V+ + + VAR L L + + + + +SI AD +ESL+ A+YL G+EVA Sbjct: 77 VNTQALADVARHLSEHGLGAHMLLGRGEANTGGADKSSILADGMESLLGAIYLHHGMEVA 136 Query: 136 GTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + + + + D KT LQE ++ P Y VT +GPDH FT VV Sbjct: 137 REAILRIFGPLLDAAPTLGAGLDWKTSLQELTASRSLGAPSYAVTS-TGPDHHKEFTAVV 195 Query: 194 EISGLAPAQGMDCS 207 ++ G+ S Sbjct: 196 VVNNTEYGSGVGRS 209 >gi|313668838|ref|YP_004049122.1| ribonuclease III [Neisseria lactamica ST-640] gi|313006300|emb|CBN87763.1| putative ribonuclease III [Neisseria lactamica 020-06] Length = 239 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HAAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + R ++ +DAKT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFADRVRRADFQNQAKDAKTALQEALQARRFALPKYRIEEQIGH 187 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 188 ANDSMFVISCDLGELGFVCRAKGTSR 213 >gi|296535948|ref|ZP_06898097.1| ribonuclease III [Roseomonas cervicalis ATCC 49957] gi|296263721|gb|EFH10197.1| ribonuclease III [Roseomonas cervicalis ATCC 49957] Length = 234 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 74/202 (36%), Positives = 109/202 (53%), Gaps = 4/202 (1%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAK 67 R+G+ F ++ LLE+ALTH S ++ ++ S ERLEFLGDR+L L+++ L F + + Sbjct: 16 ARLGHEFRDKGLLEQALTHRSAANPRRDMLDSNERLEFLGDRVLALVMAEWLSERFPAER 75 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L R + LV+AET ++V + L + +RV + ++ AD E+LI ALY Sbjct: 76 EGALGKRLSVLVAAETLAKVGEAIGLPAMLRVPPAEGRTGLRGRATVIADATEALIGALY 135 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 LD G+EV F+ + W + AK+ LQE + PEY+ +GP H P Sbjct: 136 LDAGLEVPRRFIRREWAEFVAADPTPPMSAKSRLQEHTLGRAEGLPEYRQVSVTGPSHQP 195 Query: 188 RFTVVVEISGLAPAQGMDCSKR 209 F V V G A+G SKR Sbjct: 196 VFVVAVRAGGRE-AEGQGDSKR 216 >gi|309378209|emb|CBX23153.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 239 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 106/206 (51%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HAAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + +R ++ +DAKT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFSERVKRADFQNQAKDAKTALQEALQARRFALPKYRIEEQIGH 187 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 188 ANDSMFVISCDLGELGFVCRAKGTSR 213 >gi|330444350|ref|YP_004377336.1| ribonuclease III [Chlamydophila pecorum E58] gi|328807460|gb|AEB41633.1| ribonuclease III [Chlamydophila pecorum E58] Length = 231 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 100/224 (44%), Gaps = 4/224 (1%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIS 56 M+ + +E ++ + F LL A TH S + E ERLEFLGD +LGL+++ Sbjct: 1 MNPIVNVKEIESKLNFTFTQPQLLVTAFTHPSYRNESPVPIEDSERLEFLGDAVLGLIVT 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F + +EG LS SLV A CS A L + + + R S QA Sbjct: 61 EHLFLLFPNLEEGVLSTIRASLVDASACSGYAESLGVCENLLIGKGERLQNQRGKLSSQA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 ++ E+++ A+YLDGG+ A + + K LQ++ P+Y+ Sbjct: 121 NLFEAILGAIYLDGGLSPARQLTVPLLPSKEKLQPLMFGNPKNLLQQFTQKHLRTLPKYQ 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 T + V V I +G+ SK+ AE++AA L Sbjct: 181 ATQYVSKEGVMSHHVQVFIHDELWGEGVAHSKKEAEKLAAQHAL 224 >gi|325203773|gb|ADY99226.1| ribonuclease III [Neisseria meningitidis M01-240355] Length = 239 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HAAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + R + +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 187 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 +D F V ++ L + S+ Sbjct: 188 ANDSMFVVSCDLGELGFVCRAKGTSR 213 >gi|325129784|gb|EGC52592.1| ribonuclease III [Neisseria meningitidis OX99.30304] gi|325133799|gb|EGC56455.1| ribonuclease III [Neisseria meningitidis M13399] gi|325135722|gb|EGC58334.1| ribonuclease III [Neisseria meningitidis M0579] gi|325141941|gb|EGC64381.1| ribonuclease III [Neisseria meningitidis 961-5945] gi|325143926|gb|EGC66236.1| ribonuclease III [Neisseria meningitidis M01-240013] gi|325197906|gb|ADY93362.1| ribonuclease III [Neisseria meningitidis G2136] gi|325202518|gb|ADY97972.1| ribonuclease III [Neisseria meningitidis M01-240149] gi|325206470|gb|ADZ01923.1| ribonuclease III [Neisseria meningitidis M04-240196] gi|325207732|gb|ADZ03184.1| ribonuclease III [Neisseria meningitidis NZ-05/33] Length = 239 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++KR+GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HAAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + R + +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 187 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 +D F V ++ L + S+ Sbjct: 188 ANDSMFVVSCDLGELGFVCRAKGTSR 213 >gi|2500553|sp|Q53844|RNC_SPICI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|1143009|gb|AAA84999.1| orfb [Spiroplasma citri] gi|110005386|emb|CAK99709.1| putative ribonuclease III protein [Spiroplasma citri] Length = 248 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 6/226 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFN 61 + K+ R +ALTH+S ++ + SY +R+EFLGD IL IS LF Sbjct: 13 IELKAFFKQYHVFIKERQYYLEALTHNSYANEHNLSYTYQRMEFLGDAILAKEISLYLFL 72 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EGE++ + +V T +++ R ++ A F+ + K I AD+ ES Sbjct: 73 SFPDKNEGEITNLRSKIVREGTLAELVRRMNWAPFLLLGKGEIKTKGYEKNRILADIYES 132 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 +IAALYLD G +V TF++ + G F + D KTELQE+ A T EYK+ Sbjct: 133 MIAALYLDLGEDVVRTFINNTLIRMVSNPGFFDKIRDYKTELQEFLQAGDARTLEYKLIK 192 Query: 180 RSGP-DHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 S P + + +TVV EI G+ +G + + AEQ+AA + L++ Sbjct: 193 ESQPLEGNRVLYTVVAEIGGIRYGEGCGYTHKEAEQLAARDALQKL 238 >gi|254442236|ref|ZP_05055712.1| ribonuclease III [Verrucomicrobiae bacterium DG1235] gi|198256544|gb|EDY80852.1| ribonuclease III [Verrucomicrobiae bacterium DG1235] Length = 263 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 105/230 (45%), Gaps = 10/230 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLIST 57 + + LE ++GY F + LL ++LTH S + ++ +RLEFLGD ++ L+++ Sbjct: 31 LPQAKVKRLENKLGYTFKTKGLLHQSLTHPSFLLNTKDQLKNNQRLEFLGDSVIQLVLTE 90 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ F S +EG+L+ + + + +AREL L ++ + R + S D Sbjct: 91 KLYEKFPSLREGKLTSIRSGYARGDYMAGIARELKLGDYLILKPKDRNAGVAENDSALGD 150 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAH-AKFGVT 172 E+LI A+YLD E + + + + L + + + K +LQE Sbjct: 151 AFEALIGAIYLDSDFETSRKIILELY--NYLDTAPTAKGVIANPKGKLQELIQPVHGNNA 208 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+ ++G H+ F V V +G +K+ A + AA + + Sbjct: 209 LRYETIAQTGEAHEREFEVAVFCHDEQLGKGAGRTKKEAAEKAALIAIAK 258 >gi|83753776|pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.1- Angstrom Resolution gi|83753777|pdb|1YZ9|B Chain B, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.1- Angstrom Resolution Length = 221 Score = 207 bits (528), Expect = 9e-52, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 119/221 (53%), Gaps = 14/221 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LEK++GY F ++SLLEKALTH S S +E YE LEFLGD ++ I LL + + Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG LS L+S E + +A++L+L FIR+ +I DV ++L AA Sbjct: 62 KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRG------KINETIIGDVFQALWAA 115 Query: 126 LYLDGGIEV--AGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +Y+D G + K +K+ A+K G+ ++D KT LQE ++ PEY++ Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISV 175 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H +F V +I G SK+ AEQ AA E++K Sbjct: 176 EGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIK 215 >gi|116671047|ref|YP_831980.1| ribonuclease III [Arthrobacter sp. FB24] gi|116611156|gb|ABK03880.1| RNAse III [Arthrobacter sp. FB24] Length = 240 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 97/207 (46%), Gaps = 6/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 L KR+G + + L ALTH S ++ + ERLEFLGD ILG ++ L+ Sbjct: 6 EELLKRLGVSI-DAGTLRLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDALYRDNP 64 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+L+ R +++VS + + R L + +I + + SI AD +E+LI Sbjct: 65 ALPEGDLAKRRSAVVSTRALAGIGRSLGIGEYIYLGQGEKLTDGKNKASILADTMEALIG 124 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A Y+ IE A V + + D KT +QE A ++ + Y V SG Sbjct: 125 ATYVSNDIETARQLVMRLIGPLLQDAAALGAGTDWKTSIQELAASRQLGSIYYAVEG-SG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDH F V+ I G QG SK+ Sbjct: 184 PDHARTFVAVLRIGGTDYGQGAGRSKK 210 >gi|307208065|gb|EFN85596.1| Ribonuclease 3 [Harpegnathos saltator] Length = 1328 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T S ++ S +RLEFLGD +L L++S L+ Sbjct: 1041 KLTKFEESIGIKFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1100 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ +T + V +L + + + T +AD++E+ Sbjct: 1101 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNP----KAELKTKDRADLLEAF 1156 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPE 174 + ALY+D G + F D + R + D K++LQ+ P Sbjct: 1157 LGALYVDKGFKYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1216 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV GP + +TV V G A+ S + AE +A E L++ Sbjct: 1217 YKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEK 1264 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T SSI+H ERLEFLGD ++ L S LF+ F +EG L+ ++V + + + Sbjct: 892 TESSIAH-----NERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVL 946 Query: 88 ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147 A++L+L ++ + + A+ E+L+ +L+LDGGIEVA + + Sbjct: 947 AKKLNLEEYMLYAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKDE 1006 Query: 148 LKSGKFRRDAKT-ELQE 163 K + LQE Sbjct: 1007 EDLAKVWVNYPRHPLQE 1023 >gi|268594306|ref|ZP_06128473.1| ribonuclease III [Neisseria gonorrhoeae 35/02] gi|268596300|ref|ZP_06130467.1| ribonuclease III [Neisseria gonorrhoeae FA19] gi|268603082|ref|ZP_06137249.1| ribonuclease III [Neisseria gonorrhoeae PID1] gi|268681562|ref|ZP_06148424.1| ribonuclease III [Neisseria gonorrhoeae PID332] gi|268683791|ref|ZP_06150653.1| ribonuclease III [Neisseria gonorrhoeae SK-92-679] gi|268686031|ref|ZP_06152893.1| ribonuclease III [Neisseria gonorrhoeae SK-93-1035] gi|268547695|gb|EEZ43113.1| ribonuclease III [Neisseria gonorrhoeae 35/02] gi|268550088|gb|EEZ45107.1| ribonuclease III [Neisseria gonorrhoeae FA19] gi|268587213|gb|EEZ51889.1| ribonuclease III [Neisseria gonorrhoeae PID1] gi|268621846|gb|EEZ54246.1| ribonuclease III [Neisseria gonorrhoeae PID332] gi|268624075|gb|EEZ56475.1| ribonuclease III [Neisseria gonorrhoeae SK-92-679] gi|268626315|gb|EEZ58715.1| ribonuclease III [Neisseria gonorrhoeae SK-93-1035] gi|317163728|gb|ADV07269.1| ribonuclease III [Neisseria gonorrhoeae TCDC-NG08107] Length = 267 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 105/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 39 HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 96 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + +R ++ +D KT LQE A+ P+Y++ + G Sbjct: 156 VSFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 215 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 216 ANDSMFVISCDLGELGFVCRAKGTSR 241 >gi|47168737|pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Ds-Rna At 2.15 Angstrom Resolution Length = 220 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 119/221 (53%), Gaps = 14/221 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LEK++GY F ++SLLEKALTH S S +E YE LEFLGD ++ I LL + + Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG LS L+S E + +A++L+L FIR+ +I DV ++L AA Sbjct: 62 KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRG------KINETIIGDVFKALWAA 115 Query: 126 LYLDGGIEV--AGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +Y+D G + K +K+ A+K G+ ++D KT LQE ++ PEY++ Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISV 175 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H +F V +I G SK+ AEQ AA E++K Sbjct: 176 EGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIK 215 >gi|85373795|ref|YP_457857.1| ribonuclease III [Erythrobacter litoralis HTCC2594] gi|84786878|gb|ABC63060.1| ribonuclease III [Erythrobacter litoralis HTCC2594] Length = 223 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 117/226 (51%), Gaps = 5/226 (2%) Query: 1 MSALRYSTLE--KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 M+ L TL+ G+A + L +ALTH S Y+RLEFLGDR+LGL IS Sbjct: 1 MTILAPETLQWLADTGFAVEDDELWLEALTHGSTGAE--RDYQRLEFLGDRVLGLAISDH 58 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF EG L+ R N+LVS C+++ R + L+ + + R+D + T+I DV Sbjct: 59 LFRKVGG-SEGALAQRLNALVSKGACAKIGRRIGLSDHLVLGKQAREDGAAQSTNILGDV 117 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 VE+L+ A YLD G V W + + K+ LQEWA P+Y++ Sbjct: 118 VEALLGANYLDAGFGPTCALVHLLWDEDLNGMAGRSKHPKSALQEWAAGNQRRPPQYELV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 RSGPDH FTV VE+ + A+ SK+ AE AA + +++ G Sbjct: 178 DRSGPDHAAIFTVRVEVHKVGAAEATASSKQEAETEAAKKFMEQFG 223 >gi|42519393|ref|NP_965323.1| ribonuclease III [Lactobacillus johnsonii NCC 533] gi|81667674|sp|Q74IP8|RNC_LACJO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|41583681|gb|AAS09289.1| ribonuclease III [Lactobacillus johnsonii NCC 533] gi|329667082|gb|AEB93030.1| ribonuclease III [Lactobacillus johnsonii DPC 6026] Length = 226 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 6/213 (2%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57 M ++ + L+K+ G F N LLE A THSS ++ + ++ YE+LEFLGD +L L +S Sbjct: 1 MVSVAFKQNLKKKYGIKFNNEKLLEDAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ HF EGEL+ +++V E S+ A E I + K ++ D Sbjct: 61 YLYRHFPRLNEGELTRMRSNIVRTEGFSEFAIECGFPEEINLGKGEEKAGARKRKTLLED 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176 V E+ AL+LD G+ F+ + RD KTELQE V EY+ Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQ 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 V + P F V + ++G ++G +K+ Sbjct: 181 VISED--ESKPSFKVQLLVNGEKVSEGQGRNKK 211 >gi|325131860|gb|EGC54560.1| ribonuclease III [Neisseria meningitidis M6190] gi|325137910|gb|EGC60485.1| ribonuclease III [Neisseria meningitidis ES14902] Length = 239 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + R ++ +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFADRVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 187 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 +D F V ++ L + S+ Sbjct: 188 ANDSMFVVSCDLGELGFVCRAKGTSR 213 >gi|289209108|ref|YP_003461174.1| ribonuclease III [Thioalkalivibrio sp. K90mix] gi|288944739|gb|ADC72438.1| ribonuclease III [Thioalkalivibrio sp. K90mix] Length = 236 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 67/187 (35%), Positives = 93/187 (49%), Gaps = 6/187 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +ALTH S + ERLEFLGD +LGL+I+ L+ A EG+L+ +LV+ E+ Sbjct: 30 RQALTHRSAG---GRNNERLEFLGDAVLGLVIADALYEQLPDAPEGDLTRLRAALVNRES 86 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 + +ARE L + + RK SI AD VE+LI Y + G++ A F + Sbjct: 87 LAALARESGLEGTLNLGQGERKSGGQRRDSILADAVEALIGVTYREAGMQAARDFTLALY 146 Query: 144 KQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 +R L S + +D KT LQE + P Y+V GPDH RFTV V + Sbjct: 147 AERLGNLPSAESLKDPKTRLQEQLQGRNAELPVYEVLEVVGPDHQRRFTVSVHLPTQGWG 206 Query: 202 -QGMDCS 207 QG S Sbjct: 207 QQGEGSS 213 >gi|83753758|pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.9- Angstrom Resolution gi|83753759|pdb|1YYO|B Chain B, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.9- Angstrom Resolution Length = 221 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 119/221 (53%), Gaps = 14/221 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LEK++GY F ++SLLEKALTH S S +E YE LEFLGD ++ I LL + + Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG LS L+S E + +A++L+L FIR+ +I DV ++L AA Sbjct: 62 KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRG------KINETIIGDVFKALWAA 115 Query: 126 LYLDGGIEV--AGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +Y+D G + K +K+ A+K G+ ++D KT LQE ++ PEY++ Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISV 175 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H +F V +I G SK+ AEQ AA E++K Sbjct: 176 EGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIK 215 >gi|268319230|ref|YP_003292886.1| ribonuclease III [Lactobacillus johnsonii FI9785] gi|262397605|emb|CAX66619.1| ribonuclease III [Lactobacillus johnsonii FI9785] Length = 226 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 6/213 (2%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57 M ++ + L+K+ G F N LLE A THSS ++ + ++ YE+LEFLGD +L L +S Sbjct: 1 MVSVAFKQNLKKKYGIKFNNEKLLENAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ HF EGEL+ +++V E S+ A E I + K ++ D Sbjct: 61 YLYRHFPRLNEGELTRMRSNIVRTEGFSEFAIECGFPEEIDLGKGEEKAGARKRKTLLED 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176 V E+ AL+LD G+ F+ + RD KTELQE V EY+ Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQ 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 V + P F V + ++G ++G +K+ Sbjct: 181 VISED--ESKPSFKVQLLVNGEKVSEGQGRNKK 211 >gi|90109239|pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (D44n) Complexed With Product Of Double-Stranded Rna Processing gi|90109240|pdb|2EZ6|B Chain B, Crystal Structure Of Aquifex Aeolicus Rnase Iii (D44n) Complexed With Product Of Double-Stranded Rna Processing Length = 221 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 119/221 (53%), Gaps = 14/221 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LEK++GY F ++SLLEKALTH S S +E YE LEFLG+ ++ I LL + + Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGNALVNFFIVDLLVQYSPN 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG LS L+S E + +A++L+L FIR+ +I DV E+L AA Sbjct: 62 KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRG------KINETIIGDVFEALWAA 115 Query: 126 LYLDGGIEV--AGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +Y+D G + K +K+ A+K G+ ++D KT LQE ++ PEY++ Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISV 175 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP H +F V +I G SK+ AEQ AA E++K Sbjct: 176 EGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIK 215 >gi|257457873|ref|ZP_05623032.1| ribonuclease III [Treponema vincentii ATCC 35580] gi|257444586|gb|EEV19670.1| ribonuclease III [Treponema vincentii ATCC 35580] Length = 245 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 104/200 (52%), Gaps = 6/200 (3%) Query: 16 AFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N SLL+ A H S S+ + + + ERLEFLGD +LG++++ L+ EG+L+ Sbjct: 26 KFKNISLLDIAFHHRSFSNEHSDFPINNERLEFLGDSVLGMIVAAELYLAHPEKPEGDLA 85 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 ++VS ++ +A L++ ++ + ++ AD +E+LI ALYLD G Sbjct: 86 KIKAAVVSEDSLFPIALNLNIDKYLMLGHGEEVSGGRKKKALLADALEALIGALYLDSGF 145 Query: 133 EVAGTFVDKYWKQRA--LKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 +V FV K + + ++ K R RD K+ LQE+ K+ + P+Y + GPDHD F Sbjct: 146 KVVQRFVLKIIEPQMQLVEQNKHRYRDYKSLLQEYVQKKYRIIPKYLLVETHGPDHDRVF 205 Query: 190 TVVVEISGLAPAQGMDCSKR 209 V V I + SK+ Sbjct: 206 QVKVVIKDKEYEPALGKSKK 225 >gi|86742282|ref|YP_482682.1| ribonuclease III [Frankia sp. CcI3] gi|86569144|gb|ABD12953.1| RNAse III [Frankia sp. CcI3] Length = 270 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 64/198 (32%), Positives = 99/198 (50%), Gaps = 8/198 (4%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL++ALTH S ++ + ERLEFLGD +LGL+++ LF EG+L+ + Sbjct: 23 DPELLDRALTHRSYAYEKGGLPTNERLEFLGDAVLGLVVTAALFIRHPDLPEGQLAKQRA 82 Query: 77 SLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S+V+ + VAR + L ++ + SI AD +E++I A+YL G++ Sbjct: 83 SVVNMRALADVARGIGPTGLGPYLLLGRGEETTGGRDKASILADTLEAIIGAVYLSSGLD 142 Query: 134 VAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 VA FV + + ++ D KT LQE PEY + +GPDH RFT Sbjct: 143 VASGFVHRLFDPLLDEAAGRGAGLDWKTSLQEQTAVLALGPPEY-IVEEAGPDHAKRFTA 201 Query: 192 VVEISGLAPAQGMDCSKR 209 I+G +G SK+ Sbjct: 202 YARIAGEPLGEGEGGSKK 219 >gi|124516572|gb|EAY58080.1| ribonuclease III [Leptospirillum rubarum] Length = 377 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 73/250 (29%), Positives = 113/250 (45%), Gaps = 34/250 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFN 61 L + +G F +E+ALTH S SH +YERLEFLGDR++GL++S L N Sbjct: 19 EHLIRILGLPFKPTMRIEEALTHRSASHERGRKTPIPNYERLEFLGDRVIGLIVSEYLLN 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + SA EG++ F+ +VS +T + +AR +DL S++ + +S+ AD ES Sbjct: 79 TWPSASEGDIGQIFSGIVSTQTLASIARRMDLGSYMILGKGSHSSGDRENSSLLADTFES 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK-----------------------------SGK 152 L AA+YL+ G+E + ++ Q ++ Sbjct: 139 LAAAIYLEYGLETCRQVLIPWFTQPLIEIVQKIENLREIRDSSSGPGSSVIATQPAPPRA 198 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K LQ+W +K P Y+V GP H RF + V + G + +KR A Sbjct: 199 GSLNYKLLLQKWCQSKAEELPVYQVLEEIGPAHQRRFRLGVFLKGKQLGEAEGTTKRGAS 258 Query: 213 QVAAAEVLKR 222 AA +R Sbjct: 259 VHAAKNAWER 268 >gi|42561014|ref|NP_975465.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81400621|sp|Q6MTC9|RNC_MYCMS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|42492511|emb|CAE77107.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321343|gb|ADK69986.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 232 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 6/226 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + ++ N L +ALTH+S ++ ++ SY+RLEFLGD IL + +S LF Sbjct: 1 MNIKNFFEKYNIKINNEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFF 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ EGEL+ S V ET +VA++++L + +++ SI ADV E+ Sbjct: 61 NYSKLSEGELTRLRASTVREETLFRVAKDINLGALVKLGHGEYITKGYEKPSILADVFEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTF 179 L AA+YLD + T++ + + S +D K+ELQE ++ +Y + Sbjct: 121 LTAAIYLDQKEDGLVTWLGQTLFKYIKDSNFINDTKDFKSELQELLQSEKRSDLKYIIEK 180 Query: 180 RS--GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ +TV V ++G G SK+ AEQ AA++ L + Sbjct: 181 EDFFANENKILYTVSVNLNGQKFGVGKGFSKQEAEQNAASDCLSKL 226 >gi|332017989|gb|EGI58626.1| Ribonuclease 3 [Acromyrmex echinatior] Length = 1326 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T S ++ S +RLEFLGD +L L++S L+ + Sbjct: 1036 KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKY 1095 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ +T + V +L + + + T +AD++E+ Sbjct: 1096 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNP----KAELKTKDRADLLEAF 1151 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPE 174 + ALY+D G++ F D + R + D K++LQ+ P Sbjct: 1152 LGALYVDKGLKYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1211 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV GP + +TV V G A S + AE +A E L++ Sbjct: 1212 YKVIECKGPTNTRVYTVAVYFQGKRLATASGHSIQEAEMNSAKEALEK 1259 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T SSI+H ERLEFLGD ++ L S LF+ F +EG L+ ++V + + + Sbjct: 887 TESSIAH-----NERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVL 941 Query: 88 ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147 A++L+L ++ + + A+ E+L+ +L+LDGGIEVA + + Sbjct: 942 AKKLNLEEYMLYAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKGE 1001 Query: 148 LKSGKFRRDAKT-ELQE 163 K + LQE Sbjct: 1002 EDLAKVWVNYPRHPLQE 1018 >gi|94970880|ref|YP_592928.1| ribonuclease III [Candidatus Koribacter versatilis Ellin345] gi|94552930|gb|ABF42854.1| RNAse III [Candidatus Koribacter versatilis Ellin345] Length = 258 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 110/232 (47%), Gaps = 23/232 (9%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRI 50 M+ R + LEK + + F + LL +ALTHSS + ++ E+LEF+GD + Sbjct: 1 MTKSRDIAALEKALDHKFEEQELLVRALTHSSYAREQRDHIHDNSVPNDNEQLEFIGDSV 60 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 L + S L F +EGELS LVSA Q AR LDL F+R+ + Sbjct: 61 LAFVTSQELVKKFPHFQEGELSKLRAYLVSARHLIQTARNLDLGKFLRLGRGEERSGGRS 120 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-------DAKTELQE 163 ++I D +E++IAA+YLDGG+ VA F+ + + LK + D K+ LQE Sbjct: 121 KSAILVDALEAVIAAIYLDGGLRVAQKFILREIVRPELKRMETEHGSALPVTDYKSALQE 180 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI--SGLA----PAQGMDCSKR 209 AHA Y V GP+H FTV I G A+ +K+ Sbjct: 181 QAHAAGRKRIVYAVVKEEGPEHRKTFTVEARILSDGNEAPEFVARAEGPTKK 232 >gi|257068990|ref|YP_003155245.1| RNAse III [Brachybacterium faecium DSM 4810] gi|256559808|gb|ACU85655.1| RNAse III [Brachybacterium faecium DSM 4810] Length = 250 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 99/206 (48%), Gaps = 6/206 (2%) Query: 18 ANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 + LLE +LTH S S+ ERLEFLGD +L L ++ L+ + EG+L+ R Sbjct: 31 QDSGLLELSLTHRSYSYENDGLPHNERLEFLGDAVLQLAVTEHLYAAHPTLPEGDLARRR 90 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 + VS + +A +LDL +++R+ SI AD E++I A++L G +V+ Sbjct: 91 AATVSTRALAVIASKLDLGAYVRLGRGEDLTGGRAKASILADTTEAVIGAVHLALGQDVS 150 Query: 136 GTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 FV + D K+ LQE A A+ G Y + SG +H +T V Sbjct: 151 RRFVLDLLRPLLDSDEFLEAGYDFKSRLQEIAAAE-GENVTYAL-SESGLEHQKVYTATV 208 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEV 219 + G+ A+G SK+ AE AA Sbjct: 209 TVPGIVTARGDGASKKDAELAAAQNA 234 >gi|309263205|ref|XP_001473806.2| PREDICTED: ribonuclease 3-like [Mus musculus] Length = 1343 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1075 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1134 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1135 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1193 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1194 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1253 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1254 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1300 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 15/119 (12%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS-- 95 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A+ L Sbjct: 923 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAK---LGESC 979 Query: 96 ------FIRVSSDLRKDVCSFM----TSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 S D R VC F+ S+ + A+YL+G +E A + Sbjct: 980 AGESGVMDHDSPDHRGVVCFFVLVCYLSLLLTPASFHLGAVYLEGSLEEAKQLFGRLLF 1038 >gi|116629437|ref|YP_814609.1| dsRNA-specific ribonuclease [Lactobacillus gasseri ATCC 33323] gi|238852587|ref|ZP_04642997.1| ribonuclease III [Lactobacillus gasseri 202-4] gi|282850853|ref|ZP_06260227.1| ribonuclease III [Lactobacillus gasseri 224-1] gi|311110915|ref|ZP_07712312.1| ribonuclease III [Lactobacillus gasseri MV-22] gi|116095019|gb|ABJ60171.1| RNAse III [Lactobacillus gasseri ATCC 33323] gi|238834733|gb|EEQ26960.1| ribonuclease III [Lactobacillus gasseri 202-4] gi|282557805|gb|EFB63393.1| ribonuclease III [Lactobacillus gasseri 224-1] gi|311066069|gb|EFQ46409.1| ribonuclease III [Lactobacillus gasseri MV-22] Length = 226 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 6/213 (2%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57 M ++ + L+++ G F N +LLE A THSS ++ + ++ YE+LEFLGD +L L +S Sbjct: 1 MVSVAFKKNLKEKYGIKFNNENLLEDAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ HF EGEL+ +++V E S+ A E + I + K ++ D Sbjct: 61 YLYRHFPRLNEGELTRMRSNIVRTEGFSEFAIECGFPAEINLGKGEEKAGARKRKTLLED 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176 V E+ AL+LD G+ F+ + RD KTELQE V EY+ Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQ 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 V + P F V + ++ ++G +K+ Sbjct: 181 VIAED--ESKPSFKVQLLVNDKKISEGQGRNKK 211 >gi|304388061|ref|ZP_07370190.1| ribonuclease III [Neisseria meningitidis ATCC 13091] gi|304337918|gb|EFM04058.1| ribonuclease III [Neisseria meningitidis ATCC 13091] Length = 267 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 39 HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 96 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + R ++ +D KT LQE A+ P+Y++ + G Sbjct: 156 VSFDADFNTAEKVVRHLFADRVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGY 215 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 216 ANDSMFVISCDLGELGFVCRAKGTSR 241 >gi|103486701|ref|YP_616262.1| ribonuclease III [Sphingopyxis alaskensis RB2256] gi|123253313|sp|Q1GTU3|RNC_SPHAL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|98976778|gb|ABF52929.1| RNAse III [Sphingopyxis alaskensis RB2256] Length = 226 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 83/208 (39%), Positives = 116/208 (55%), Gaps = 3/208 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 L L IG + +L + ALTH S + + Y+RLEFLGDR+LGL++++ L+ Sbjct: 3 DPLNTEALADIIGCIPDDLTLYDLALTHGS---TGRADYQRLEFLGDRVLGLVLASELYT 59 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +A EGE+S R + L S TC+ +A+ LDL + IR + R D +I AD +E+ Sbjct: 60 RFPAASEGEMSSRLHVLASGATCAAIAQRLDLPALIRFGAQARSDGGRHSDNIAADAIEA 119 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 LI AL+L+ GIE A TF+ W + K LQEWA A+ PEY++ R Sbjct: 120 LIGALFLERGIEAARTFILAQWGALIDGQQAAPKHPKAALQEWALARGRRPPEYEIVSRE 179 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDH PRF + V I LA A+ SK+ Sbjct: 180 GPDHAPRFRIAVSIGKLARAEAQGASKQ 207 >gi|239917409|ref|YP_002956967.1| RNAse III [Micrococcus luteus NCTC 2665] gi|239838616|gb|ACS30413.1| RNAse III [Micrococcus luteus NCTC 2665] Length = 220 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 8/206 (3%) Query: 23 LEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LE+ALTH S ++ + ERLEFLGD +LG +++ +F + EG+L+ R ++VS Sbjct: 8 LERALTHRSFAYEQGGLPTNERLEFLGDSVLGYVVTDHIFTVYPDLAEGDLARRRAAVVS 67 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 ++VAR + + F+R+ + R+ + SI AD +E+LI A+Y+D G A V Sbjct: 68 TRALAKVARRIGIGPFVRLGTGERRTGGADKDSILADTLEALIGAVYVDHGAVAAAALVH 127 Query: 141 KYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 ++ + R D KT + E A Y + + GP HDPR+ + + Sbjct: 128 RHVVPLLDEPDLLRESTDWKTVVAEAASRHGLGAVRYAIEGQ-GPAHDPRYRATLVVGER 186 Query: 199 APAQGMDCSKRAAEQVAAAE---VLK 221 + SK+ AE+ AAA L+ Sbjct: 187 EYGSAVASSKKQAERDAAAASWPALE 212 >gi|227890258|ref|ZP_04008063.1| ribonuclease III [Lactobacillus johnsonii ATCC 33200] gi|227849072|gb|EEJ59158.1| ribonuclease III [Lactobacillus johnsonii ATCC 33200] Length = 226 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 6/213 (2%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57 M ++ + L+K+ G F N LLE A THSS ++ + ++ YE+LEFLGD +L L +S Sbjct: 1 MVSVAFKQNLKKKYGIKFNNEKLLEDAFTHSSYANEHSGRKDYEKLEFLGDAVLELAVSD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ HF EGEL+ +++V E S+ A E I + K ++ D Sbjct: 61 YLYRHFPRLNEGELTRMRSNIVRTEGFSEFAIECGFPEEIDLGKGEEKAGARKRKTLLED 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176 V E+ AL+LD G+ F+ + RD KTELQE V EY+ Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQ 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 V + P F V + ++G ++G +K+ Sbjct: 181 VISED--ESKPSFKVQLLVNGEKVSEGQGRNKK 211 >gi|184200693|ref|YP_001854900.1| ribonuclease III [Kocuria rhizophila DC2201] gi|183580923|dbj|BAG29394.1| ribonuclease III [Kocuria rhizophila DC2201] Length = 234 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 66/214 (30%), Positives = 96/214 (44%), Gaps = 7/214 (3%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLIST 57 M+AL L +R+G + L ALTH S ++ + ERLEFLGD +L L ++ Sbjct: 1 MTALPDPGELLERLGVDL-DTETLRIALTHRSYAYEHPGEVHNERLEFLGDAVLQLAVTD 59 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +++ + EG L+ S+VSA + VAR L L IR+ + S SI AD Sbjct: 60 EIYHRYPEWDEGRLAKLRASVVSARALAGVARSLGLGPHIRLGKGEVRTHGSDKASILAD 119 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEY 175 E++I A+Y G A V + + RD KT + E T Y Sbjct: 120 TTEAVIGAVYESLGPVPARDLVLRMMVPLLEDTRVLHEGRDWKTHIVELVAQHGLGTVRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 +V +GPDH+ FT + G G SK+ Sbjct: 180 EVEG-TGPDHERHFTADAVVDGNVLGHGEGTSKK 212 >gi|268598421|ref|ZP_06132588.1| ribonuclease III [Neisseria gonorrhoeae MS11] gi|291044414|ref|ZP_06570123.1| ribonuclease III [Neisseria gonorrhoeae DGI2] gi|268582552|gb|EEZ47228.1| ribonuclease III [Neisseria gonorrhoeae MS11] gi|291011308|gb|EFE03304.1| ribonuclease III [Neisseria gonorrhoeae DGI2] Length = 267 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 39 HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 96 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + +R ++ +D KT LQE A+ P+Y++ + G Sbjct: 156 VSFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 215 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 D F + ++ L + S+ Sbjct: 216 ADDSMFVISCDLGELGFVCRAKGTSR 241 >gi|300361933|ref|ZP_07058110.1| ribonuclease III [Lactobacillus gasseri JV-V03] gi|300354552|gb|EFJ70423.1| ribonuclease III [Lactobacillus gasseri JV-V03] Length = 226 Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 5/206 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64 + L+++ G F N +LLE A THSS ++ + ++ YE+LEFLGD +L L +S L+ HF Sbjct: 8 NNLKEKYGIKFNNENLLEDAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSDYLYRHFP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ +++V E S+ A E + I + K ++ DV E+ Sbjct: 68 RLNEGELTRMRSNIVRTEGFSEFAIECGFPAEINLGKGEEKAGARKRKTLLEDVFEAFNG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AL+LD G+ F+ + RD KTELQE V EY+V Sbjct: 128 ALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQVIAED-- 185 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 + P F V + ++ ++G +K+ Sbjct: 186 ESKPYFKVQLLVNDKKISEGQGRNKK 211 >gi|218767809|ref|YP_002342321.1| ribonuclease III [Neisseria meningitidis Z2491] gi|22654074|sp|Q9JVD3|RNC_NEIMA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|121051817|emb|CAM08123.1| putative ribonuclease III [Neisseria meningitidis Z2491] Length = 239 Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + +R + +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFAERVRRVDFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 187 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 188 ANDSMFVISCDLGELGFVCRAKGTSR 213 >gi|288560534|ref|YP_003424020.1| ribonuclease III Rnc [Methanobrevibacter ruminantium M1] gi|288543244|gb|ADC47128.1| ribonuclease III Rnc [Methanobrevibacter ruminantium M1] Length = 232 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 63/211 (29%), Positives = 95/211 (45%), Gaps = 2/211 (0%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + + L E A THSS + + YERLEFLGD +L +L S L N EG+ Sbjct: 6 KFDIVPNDMELYETAFTHSSYASKHHLNDYERLEFLGDSVLNMLTSEFLQNMHPDFGEGK 65 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ + V + E L ++++ + + + SI ADV ES + A+YLD Sbjct: 66 LTKLRANYVCQNALIVYSHEFGLDKCVKLNLEDNALTDNEVISITADVFESFLGAIYLDQ 125 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 GI F+ F D K+ ++E+ A Y++ G HD F Sbjct: 126 GISKCKEFLTITVFPYIENEQIFFHDYKSTIKEYGDA-IDKEITYELIEEHGAPHDKTFV 184 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + + I G+ G+ SK+ AEQVAA +K Sbjct: 185 MKILIDGVDFGHGVGKSKKEAEQVAACNAIK 215 >gi|254493164|ref|ZP_05106335.1| ribonuclease III [Neisseria gonorrhoeae 1291] gi|268600776|ref|ZP_06134943.1| ribonuclease III [Neisseria gonorrhoeae PID18] gi|226512204|gb|EEH61549.1| ribonuclease III [Neisseria gonorrhoeae 1291] gi|268584907|gb|EEZ49583.1| ribonuclease III [Neisseria gonorrhoeae PID18] Length = 267 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 105/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 39 HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 96 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + +R ++ +D KT LQE A+ P+Y++ + G Sbjct: 156 VSFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 215 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 216 ANDSMFVISCDLGELGFVCRAKGTSR 241 >gi|194333018|ref|YP_002014878.1| Ribonuclease III [Prosthecochloris aestuarii DSM 271] gi|194310836|gb|ACF45231.1| Ribonuclease III [Prosthecochloris aestuarii DSM 271] Length = 277 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 11/222 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--------ESYERLEFLGDRILGL 53 +A+R + +E+ I A+ + + A TH S H +S +RLEFLGD +L L Sbjct: 38 NAIR-AYVEQLIRQPCASVDIYKTAFTHRSFVHDQHQGSSPAPFDSNQRLEFLGDAVLDL 96 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +IS L+ F + EG LS + +V+ ++ + A+ + L + + + ++ + Sbjct: 97 IISEHLYKLFPESDEGALSSTRSKIVNRKSLADFAQAIALGNQLIIGESADEEKIRKSEA 156 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGV 171 AD E+LI A+YLD G+ F+D + K + K+ L E+A A Sbjct: 157 TMADAFEALIGAIYLDKGLPAVQRFIDDHVMTIVDVPKLATIEHNHKSRLIEFAQANQLS 216 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 P+Y + G +H FTV V G G K+ AEQ Sbjct: 217 HPQYTIIREEGAEHQKTFTVEVSFDGKPFGTGTAARKKDAEQ 258 >gi|156359582|ref|XP_001624846.1| predicted protein [Nematostella vectensis] gi|156211649|gb|EDO32746.1| predicted protein [Nematostella vectensis] Length = 917 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 111/226 (49%), Gaps = 15/226 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E+ G F + LL +A TH + ++ +RLEFLGD +L ++S L+ H Sbjct: 677 KLVEFEEGSGIPFTHIRLLARAFTHPQVGKNNLTLGDNQRLEFLGDSVLQFVVSVFLYQH 736 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV++ + +++AR+L+L FI + + ADV+E+L Sbjct: 737 FPDHHEGHLTLLRSSLVNSRSQAEIARQLNLQEFINTGP------TNVREKMLADVLEAL 790 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHA-----KFGVTPEY 175 IAA+++D G+ F + R S + D+K++LQ+ A K P Y Sbjct: 791 IAAVFVDKGLRHVEVFCRVCFFSRLEDSIVNQEWIDSKSQLQQCCLAMRTEGKSPDLPIY 850 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++ +GP H ++ V V G +G S AE AA + L+ Sbjct: 851 RILQDAGPAHHKKYQVGVYFQGTRCGKGEGSSIHQAEMAAAKDALE 896 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 81/212 (38%), Gaps = 55/212 (25%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHS---------------SISHSYQE------------ 38 TL+ ++GY F +R LL+ AL+H S+S+ + Sbjct: 447 LRTLDAKLGYTFKDRMLLQLALSHPSYHLNYGMNPDHARNSLSNCGVKQPRYGDRRIHNV 506 Query: 39 ----------------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 ERLEFLGD +L L+ S LF EG Sbjct: 507 HSKKKGITHLVRVMANLGKVEEDRSMIRHNERLEFLGDAVLELICSKHLFFMLPDMDEGH 566 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ ++LV + +A+ LDL+ +++ S + A+ +E+L+ A+YL+ Sbjct: 567 LATFRSALVQNRHLALLAKMLDLSDYMQFSHGPDLCQEDDLNHAMANCLEALLGAVYLEA 626 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 G++VA + K+ K LQ Sbjct: 627 GLQVATELFSRLAFTEQDLYDKWMELPKHRLQ 658 >gi|114600823|ref|XP_001157589.1| PREDICTED: ribonuclease III, nuclear isoform 7 [Pan troglodytes] Length = 1382 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1114 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1173 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1174 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1232 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1233 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1292 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1293 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1339 Score = 98.2 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 971 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1030 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 1031 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1077 Score = 43.1 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 13/87 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L+K IGY F +R LL+ A+TH S ++ + R + + I + Sbjct: 878 HLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHAR-----NSLSNCGI---RQPKYGD 929 Query: 66 AKEGELSVRFNSLVSAETCSQVARELD 92 K + +R + T + L Sbjct: 930 RKVHHMHMRKKGI---NTLINIMSRLG 953 >gi|291395193|ref|XP_002714143.1| PREDICTED: ribonuclease III, nuclear [Oryctolagus cuniculus] Length = 1338 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1070 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1129 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1130 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1188 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1189 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1248 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1249 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1295 Score = 98.2 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 927 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 986 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 987 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1033 >gi|194097974|ref|YP_002001022.1| ribonuclease III [Neisseria gonorrhoeae NCCP11945] gi|239998445|ref|ZP_04718369.1| ribonuclease III [Neisseria gonorrhoeae 35/02] gi|240080149|ref|ZP_04724692.1| ribonuclease III [Neisseria gonorrhoeae FA19] gi|240117386|ref|ZP_04731448.1| ribonuclease III [Neisseria gonorrhoeae PID1] gi|240122943|ref|ZP_04735899.1| ribonuclease III [Neisseria gonorrhoeae PID332] gi|240125195|ref|ZP_04738081.1| ribonuclease III [Neisseria gonorrhoeae SK-92-679] gi|240127651|ref|ZP_04740312.1| ribonuclease III [Neisseria gonorrhoeae SK-93-1035] gi|238690180|sp|B4RJT7|RNC_NEIG2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|193933264|gb|ACF29088.1| ribonuclease III [Neisseria gonorrhoeae NCCP11945] Length = 239 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 105/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + +R ++ +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 187 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 188 ANDSMFVISCDLGELGFVCRAKGTSR 213 >gi|114600825|ref|XP_001157646.1| PREDICTED: ribonuclease III, nuclear isoform 8 [Pan troglodytes] Length = 1343 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1075 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1134 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1135 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1193 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1194 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1253 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1254 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1300 Score = 98.2 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 932 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 991 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 992 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1038 >gi|73953908|ref|XP_854135.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 2 [Canis familiaris] Length = 1365 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1097 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1156 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1157 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1215 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1216 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1275 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1276 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1322 Score = 98.2 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 954 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1013 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 1014 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1060 >gi|297294054|ref|XP_002804372.1| PREDICTED: ribonuclease 3 isoform 2 [Macaca mulatta] gi|297294056|ref|XP_002804373.1| PREDICTED: ribonuclease 3 isoform 3 [Macaca mulatta] Length = 1374 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331 Score = 98.2 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 963 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1069 >gi|332251722|ref|XP_003274996.1| PREDICTED: ribonuclease 3-like [Nomascus leucogenys] Length = 1331 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1063 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1122 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1123 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1181 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1182 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1241 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1242 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1288 Score = 98.2 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 920 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 979 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 980 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1026 >gi|301769069|ref|XP_002919953.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3-like [Ailuropoda melanoleuca] Length = 1369 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1101 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1160 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1161 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1219 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1220 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1279 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1280 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1326 Score = 98.2 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 958 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1017 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 1018 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1064 >gi|149732818|ref|XP_001500764.1| PREDICTED: ribonuclease type III, nuclear isoform 1 [Equus caballus] Length = 1374 Score = 204 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331 Score = 98.2 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 963 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1069 >gi|119489618|ref|ZP_01622378.1| Ribonuclease III [Lyngbya sp. PCC 8106] gi|119454530|gb|EAW35678.1| Ribonuclease III [Lyngbya sp. PCC 8106] Length = 233 Score = 204 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 13/210 (6%) Query: 16 AFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS-AKEGEL 71 + L +ALTH S + + ++ ERLEFLGD +LG L+ LL+ ++ E ++ Sbjct: 6 TIKDEKLRLRALTHRSYVNEHPGDGKNNERLEFLGDAVLGFLVGELLYTYYPEELSEAKM 65 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + +LV + + A +L + +R+ KD ++ +D E+ I A YLD G Sbjct: 66 TRLRAALVDEQQLGKFAAQLGIGEIMRLGKGAIKDGGYQNPALLSDTFEAYIGAYYLDAG 125 Query: 132 IEVAGTFVDKYWKQRA---------LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IE F+ + + A K+ + D+K Q+WA A+FG P+Y + +SG Sbjct: 126 IEKVREFITPLFTKVANEILGMHTEEKNSEHLIDSKNRFQQWALAEFGENPKYFIIDQSG 185 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 PDH F V + G K+ A+ Sbjct: 186 PDHAKEFIAEVRVKDQVYGLGQGRRKQDAQ 215 >gi|114600815|ref|XP_526954.2| PREDICTED: ribonuclease III, nuclear isoform 11 [Pan troglodytes] gi|114600817|ref|XP_001157424.1| PREDICTED: ribonuclease III, nuclear isoform 4 [Pan troglodytes] gi|114600819|ref|XP_001157533.1| PREDICTED: ribonuclease III, nuclear isoform 6 [Pan troglodytes] gi|332821657|ref|XP_001157472.2| PREDICTED: ribonuclease 3 isoform 5 [Pan troglodytes] Length = 1374 Score = 204 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331 Score = 98.2 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 963 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1069 >gi|155030234|ref|NP_037367.3| ribonuclease 3 isoform 1 [Homo sapiens] gi|20139357|sp|Q9NRR4|RNC_HUMAN RecName: Full=Ribonuclease 3; AltName: Full=Protein Drosha; AltName: Full=Ribonuclease III; Short=RNase III; AltName: Full=p241 Length = 1374 Score = 204 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331 Score = 98.2 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 963 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1069 >gi|297675037|ref|XP_002815506.1| PREDICTED: ribonuclease 3-like [Pongo abelii] Length = 1374 Score = 204 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331 Score = 98.2 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 963 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1069 >gi|296194850|ref|XP_002745134.1| PREDICTED: ribonuclease 3 isoform 1 [Callithrix jacchus] Length = 1374 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331 Score = 97.8 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 963 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1069 >gi|218663008|ref|ZP_03518938.1| ribonuclease III [Rhizobium etli IE4771] Length = 206 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 98/159 (61%), Positives = 127/159 (79%) Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 + ELSVR N LVSAETC+ VA EL+L +IR +D++K M +++ADVVESLIAA+Y Sbjct: 41 KAELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVESLIAAIY 100 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 LDGG+EVA F+ +YW+ RA+++ +RDAKTELQEW+HAKFGVTP Y+V RSGPDHDP Sbjct: 101 LDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDERSGPDHDP 160 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 RF V VE++G+ P G++ SKRAAEQVAA ++L+REGIW Sbjct: 161 RFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 199 >gi|114600829|ref|XP_001157712.1| PREDICTED: ribonuclease III, nuclear isoform 9 [Pan troglodytes] Length = 1306 Score = 204 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1038 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1097 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1098 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1156 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1157 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1216 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1217 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1263 Score = 97.8 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 895 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 954 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 955 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1001 >gi|297294058|ref|XP_001085611.2| PREDICTED: ribonuclease 3 isoform 1 [Macaca mulatta] Length = 1337 Score = 204 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1187 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1247 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1248 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1294 Score = 97.8 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 926 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 986 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1032 >gi|126321160|ref|XP_001375491.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 1388 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1108 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1167 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1168 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1226 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1227 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1286 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1287 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1333 Score = 97.8 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 965 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1024 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 1025 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1071 >gi|206603444|gb|EDZ39924.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG'] Length = 375 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 73/250 (29%), Positives = 113/250 (45%), Gaps = 34/250 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFN 61 L + +G F +E+ALTH S SH +YERLEFLGDR++GL++S L N Sbjct: 19 EHLIRILGLPFKPTMRIEEALTHRSASHERGRKTPIPNYERLEFLGDRVIGLIVSEYLLN 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + SA EG++ F+ +VS +T + +AR +DL S++ + +S+ AD ES Sbjct: 79 TWPSASEGDIGQIFSGIVSTQTLASIARRMDLGSYMILGKGSHSSGDRENSSLLADTFES 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK-----------------------------SGK 152 L AA+YL+ G+E + ++ Q ++ Sbjct: 139 LAAAIYLEYGLETCRQVLIPWFTQPLIEIVQKIENLREVRDSSSGPVSSVIAAQPAPPRA 198 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K LQ+W +K P Y+V GP H RF + V + G + +KR A Sbjct: 199 GSLNFKLLLQKWCQSKAEELPVYQVLEEIGPAHQRRFRLGVFLKGKQLGEAEGTTKRGAS 258 Query: 213 QVAAAEVLKR 222 AA +R Sbjct: 259 VHAAKNAWER 268 >gi|73953920|ref|XP_868251.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 8 [Canis familiaris] Length = 1297 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1029 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1088 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1089 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1147 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1148 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1207 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1208 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1254 Score = 97.8 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 886 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 945 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 946 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 992 >gi|289705863|ref|ZP_06502243.1| ribonuclease III [Micrococcus luteus SK58] gi|289557406|gb|EFD50717.1| ribonuclease III [Micrococcus luteus SK58] Length = 244 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 67/220 (30%), Positives = 109/220 (49%), Gaps = 9/220 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L +R+G LE+ALTH S ++ + ERLEFLGD +LG +++ +F + Sbjct: 19 LFERLGVHIT-AGTLERALTHRSFAYEQGGLPTNERLEFLGDSVLGYVVTDHIFTVYPDL 77 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ R ++VS ++VAR + + F+R+ + R+ + SI AD +E+LI A+ Sbjct: 78 AEGDLARRRAAVVSTRALAKVARRIGIGPFVRLGTGERRTGGADKDSILADTLEALIGAV 137 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 Y+D G A V ++ + R D KT + E A Y + + GP Sbjct: 138 YVDHGAVAAAALVHRHVVPLLDEPDLLRESTDWKTVVAEAASRHGLGAVRYAIEGQ-GPA 196 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLK 221 HDPR+ + + + SK+ AE+ AAA L+ Sbjct: 197 HDPRYRATLVVGEREYDSAVASSKKQAERDAAAASWPALE 236 >gi|155030236|ref|NP_001093882.1| ribonuclease 3 isoform 2 [Homo sapiens] gi|114600827|ref|XP_001157762.1| PREDICTED: ribonuclease 3 isoform 10 [Pan troglodytes] Length = 1337 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1187 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1247 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1248 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1294 Score = 97.8 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 926 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 986 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1032 >gi|119631172|gb|EAX10767.1| ribonuclease III, nuclear, isoform CRA_a [Homo sapiens] gi|119631173|gb|EAX10768.1| ribonuclease III, nuclear, isoform CRA_a [Homo sapiens] Length = 1349 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1081 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1140 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1141 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1199 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1200 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1259 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1260 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1306 Score = 97.8 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 938 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 997 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 998 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1044 >gi|327284145|ref|XP_003226799.1| PREDICTED: ribonuclease 3-like [Anolis carolinensis] Length = 1323 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1055 KLTMFEDAIGVTFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1114 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + F +++D K + T AD++ES Sbjct: 1115 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVALRTKTLADLLESF 1173 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1174 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1233 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1234 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMCAAMDALEK 1280 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 4/126 (3%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 927 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 986 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + L+ R Sbjct: 987 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNCKLQESNTDR-- 1044 Query: 158 KTELQE 163 +L E Sbjct: 1045 --QLIE 1048 >gi|296194852|ref|XP_002745135.1| PREDICTED: ribonuclease 3 isoform 2 [Callithrix jacchus] Length = 1337 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1187 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1247 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1248 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1294 Score = 97.8 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 926 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 986 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1032 >gi|60679772|ref|YP_209916.1| putative ribonuclease III [Bacteroides fragilis NCTC 9343] gi|253564432|ref|ZP_04841889.1| ribonuclease 3 [Bacteroides sp. 3_2_5] gi|81317155|sp|Q5LIS2|RNC_BACFN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|60491206|emb|CAH05954.1| putative ribonuclease III [Bacteroides fragilis NCTC 9343] gi|251948208|gb|EES88490.1| ribonuclease 3 [Bacteroides sp. 3_2_5] gi|301161237|emb|CBW20775.1| putative ribonuclease III [Bacteroides fragilis 638R] Length = 290 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 114/227 (50%), Gaps = 13/227 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 YS + +G+ N L E+AL H S + ++ + ERLEFLGD IL ++ ++ Sbjct: 18 ESYSCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIV 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + HF+ +EG L+ + +V ET +++A E+ L I+ S+ S + + + Sbjct: 78 YQHFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+ I A+YLD G E F+++ + + K R + K++L EW+ + ++ Sbjct: 134 EAFIGAIYLDRGYECCKQFMERRIIEPYIDLDKLSRKEVNFKSKLIEWSQKN-KMEVSFE 192 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + +S +++P F V I G+ G SK+ ++Q AA LK+ Sbjct: 193 LIEQSLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMTLKK 239 >gi|149732820|ref|XP_001500777.1| PREDICTED: ribonuclease type III, nuclear isoform 2 [Equus caballus] Length = 1337 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1187 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1247 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1248 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1294 Score = 97.8 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 926 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 986 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1032 >gi|73953922|ref|XP_536514.2| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 1 [Canis familiaris] Length = 1328 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1060 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1119 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1120 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1178 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1179 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1238 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1239 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1285 Score = 97.8 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 917 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 976 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 977 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1023 >gi|53711509|ref|YP_097501.1| ribonuclease III [Bacteroides fragilis YCH46] gi|81383900|sp|Q64ZV9|RNC_BACFR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|52214374|dbj|BAD46967.1| ribonuclease III [Bacteroides fragilis YCH46] Length = 290 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 114/227 (50%), Gaps = 13/227 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 YS + +G+ N L E+AL H S + ++ + ERLEFLGD IL ++ ++ Sbjct: 18 ESYSCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIV 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + HF+ +EG L+ + +V ET +++A E+ L I+ S+ S + + + Sbjct: 78 YQHFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+ I A+YLD G E F+++ + + K R + K++L EW+ + ++ Sbjct: 134 EAFIGAIYLDRGYECCKQFMERRIIEPYIDLDKLSRKEVNFKSKLIEWSQKN-KMEVSFE 192 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + +S +++P F V I G+ G SK+ ++Q AA LK+ Sbjct: 193 LIEQSLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMTLKK 239 >gi|313665378|ref|YP_004047249.1| ribonuclease III [Mycoplasma leachii PG50] gi|312949374|gb|ADR23970.1| ribonuclease III [Mycoplasma leachii PG50] Length = 232 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 6/226 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + ++ ++ + ++ALTH+S ++ + SY+RLEFLGD IL + S LF Sbjct: 1 MNIKNFFEKYNIKINDQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYTSKFLFF 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ EGEL+ S+V E+ S++AR+++L IR+ SI AD+ E+ Sbjct: 61 NYSKLGEGELTRLRASIVREESLSRIARDINLGQLIRLGHSELMTKGYEKQSILADIFEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L AA+YLD E ++++ + +D K+ELQE ++ +Y Sbjct: 121 LTAAIYLDQSEEGLLIWLEQTLFKYMKDPTFINVTKDFKSELQELLQSEKRSDLKYITEN 180 Query: 180 RS--GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ +TV + + G G SK+ AEQ AA++ L + Sbjct: 181 EEFFANENKTLYTVSINLDGQKFGVGKGYSKQEAEQNAASDCLSKL 226 >gi|210622528|ref|ZP_03293221.1| hypothetical protein CLOHIR_01169 [Clostridium hiranonis DSM 13275] gi|210154163|gb|EEA85169.1| hypothetical protein CLOHIR_01169 [Clostridium hiranonis DSM 13275] Length = 204 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 63/183 (34%), Positives = 89/183 (48%), Gaps = 4/183 (2%) Query: 29 HSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86 HSS S+ ++ ER+EFLGD +LGL+IS +F EGEL+ ++V + S+ Sbjct: 1 HSSYSNENKKFKYNERMEFLGDSVLGLVISDHIFKKETGVPEGELTKLRANIVCEGSLSE 60 Query: 87 VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146 A+ + L +I + SI AD E++IAA+YLDGGIE A F+ Sbjct: 61 AAKNIRLGDYILLGRGEEATGGRERKSILADAFEAVIAAIYLDGGIESASKFILSNLSDI 120 Query: 147 ALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 S GK RD KT+LQE YK+ GPDH+ F ++V + G Sbjct: 121 IKDSIDGKIFRDYKTQLQEEIQKNGSSNIWYKLLDEDGPDHNKTFIMMVGVEDRELGVGK 180 Query: 205 DCS 207 S Sbjct: 181 GKS 183 >gi|194306545|ref|NP_081075.3| ribonuclease 3 [Mus musculus] gi|194328670|ref|NP_001123621.1| ribonuclease 3 [Mus musculus] gi|81882947|sp|Q5HZJ0|RNC_MOUSE RecName: Full=Ribonuclease 3; AltName: Full=Protein Drosha; AltName: Full=Ribonuclease III; Short=RNase III gi|57242920|gb|AAH88999.1| Rnasen protein [Mus musculus] gi|74184402|dbj|BAE25729.1| unnamed protein product [Mus musculus] gi|74215950|dbj|BAE28629.1| unnamed protein product [Mus musculus] Length = 1373 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1105 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1164 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1165 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1223 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1224 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1283 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1284 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1330 Score = 97.8 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 962 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1021 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 1022 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1068 >gi|169261416|gb|ACA52288.1| nuclear ribonuclease III protein [Xenopus tropicalis] Length = 1325 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1061 KLTKFEEAIGVEFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1120 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + F +++D K T AD++ES Sbjct: 1121 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVVLRTKTLADLLESF 1179 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1180 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1239 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1240 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1286 Score = 97.5 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F +EG L+ ++V + + +A++L+L F+ Sbjct: 918 NHNERLEFLGDAVVEFLTSVHLYYLFPLLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 977 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+L+ A+YL+GG+E A + Sbjct: 978 LYAHGPDLCRESDLRHAMANCFEALMGAVYLEGGLEEAKQLFGRLLF 1024 >gi|23464896|ref|NP_695499.1| ribonuclease III [Bifidobacterium longum NCC2705] gi|23325487|gb|AAN24135.1| ribonuclease III [Bifidobacterium longum NCC2705] Length = 277 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 106/220 (48%), Gaps = 10/220 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + L + +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF Sbjct: 48 NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 106 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS + S +A+ +L + +I + + + SI D+VESLI Sbjct: 107 DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 166 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A +L+ GI+ A + + + + D KT L AH P Y + S Sbjct: 167 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKEEPVYHM-EVS 225 Query: 182 GPDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEV 219 GP++ FT V + +G G SKR A Q+AAAE Sbjct: 226 GPEYAQIFTARVSLGENGDIIGIGKGSSKRKA-QLAAAEA 264 >gi|17227776|ref|NP_484324.1| ribonuclease III [Nostoc sp. PCC 7120] gi|22654062|sp|Q8Z023|RNC_ANASP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|17135258|dbj|BAB77804.1| ribonuclease III [Nostoc sp. PCC 7120] Length = 228 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 8/202 (3%) Query: 17 FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F + LL +ALTH S + E ERLEFLGD IL L L+ E EL+ Sbjct: 7 FRDDKLLRRALTHRSYVNENPEEGEHNERLEFLGDAILNFLSGEYLYRSHPDRGEDELTR 66 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD--GG 131 R ++LV + ++ A E+ L +R+ +D ++ + E++I A YLD Sbjct: 67 RRSALVDEKQLAKFAIEVGLDFKMRLGKGAIRDGGYQNPNLLSSTFEAVIGAYYLDNNSN 126 Query: 132 IEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTFRSGPDHDPR 188 IE ++ ++ + + D+K QEW G T P+Y G H P Sbjct: 127 IEAVRAIIEPLFESVPEQIVVVRSNVDSKNRFQEWVQRNIGPTPPKYLTEQIGGFSHAPE 186 Query: 189 FTVVVEISGLAPAQGMDCSKRA 210 F V + +G+ +K+ Sbjct: 187 FKATVLVGEKEYGEGIGKNKKD 208 >gi|297463231|ref|XP_002702571.1| PREDICTED: ribonuclease III, nuclear [Bos taurus] gi|297487774|ref|XP_002696435.1| PREDICTED: ribonuclease III, nuclear-like isoform 1 [Bos taurus] gi|296475747|gb|DAA17862.1| ribonuclease III, nuclear-like isoform 1 [Bos taurus] Length = 1367 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1099 KLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1158 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1159 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1217 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1218 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1277 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1278 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1324 Score = 97.8 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 956 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1015 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 1016 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1062 >gi|15676584|ref|NP_273728.1| ribonuclease III [Neisseria meningitidis MC58] gi|22654075|sp|Q9K0C8|RNC_NEIMB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|7225914|gb|AAF41104.1| ribonuclease III [Neisseria meningitidis MC58] gi|261392941|emb|CAX50526.1| ribonuclease III (RNase III) [Neisseria meningitidis 8013] gi|316983658|gb|EFV62639.1| ribonuclease III [Neisseria meningitidis H44/76] gi|325139865|gb|EGC62396.1| ribonuclease III [Neisseria meningitidis CU385] gi|325200628|gb|ADY96083.1| ribonuclease III [Neisseria meningitidis H44/76] Length = 239 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + R ++ +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFADRVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGY 187 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 188 ANDSMFVISCDLGELGFVCRAKGTSR 213 >gi|265764902|ref|ZP_06093177.1| ribonuclease III [Bacteroides sp. 2_1_16] gi|263254286|gb|EEZ25720.1| ribonuclease III [Bacteroides sp. 2_1_16] Length = 290 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 114/227 (50%), Gaps = 13/227 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 YS + +G+ N L E+AL H S + ++ + ERLEFLGD IL ++ ++ Sbjct: 18 ESYSCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIV 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + HF+ +EG L+ + +V ET +++A E+ L I+ S+ S + + + Sbjct: 78 YQHFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+ I A+YLD G E F+++ + + K R + K++L EW+ + ++ Sbjct: 134 EAFIGAIYLDRGYECCKQFMERRIIEPYIDLDKLSRKEVNFKSKLIEWSQKN-KMEVSFE 192 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + +S +++P F V I G+ G SK+ ++Q AA LK+ Sbjct: 193 LIEQSLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMTLKK 239 >gi|289804515|ref|ZP_06535144.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 187 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 3/171 (1%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 +EFLGD IL +I+ L++ F EG++S +LV T +++ARE DL +R+ Sbjct: 1 MEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPG 60 Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTE 160 K SI AD VE+LI ++LD I+ + ++K R + G ++D KT Sbjct: 61 ELKSGGFRRESILADTVEALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTR 120 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 LQE+ + P Y V G HD FT+ ++SGL P G S+R Sbjct: 121 LQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 171 >gi|293399592|ref|ZP_06643745.1| ribonuclease III [Neisseria gonorrhoeae F62] gi|291610161|gb|EFF39283.1| ribonuclease III [Neisseria gonorrhoeae F62] Length = 267 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 39 HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 96 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + +R ++ +D KT LQE A+ P+Y++ + G Sbjct: 156 VSFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 215 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 D F + ++ L + S+ Sbjct: 216 ADDSMFVISCDLGELGFVCRAKGTSR 241 >gi|73953918|ref|XP_868248.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 7 [Canis familiaris] Length = 1016 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 748 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 807 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 808 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 866 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 867 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 926 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 927 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 973 Score = 97.5 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 605 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 664 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 665 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 711 >gi|227892635|ref|ZP_04010440.1| ribonuclease III [Lactobacillus ultunensis DSM 16047] gi|227865567|gb|EEJ72988.1| ribonuclease III [Lactobacillus ultunensis DSM 16047] Length = 228 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 66/214 (30%), Positives = 98/214 (45%), Gaps = 10/214 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLI 55 M + ++ + L+ F N LLE+A THSS S+ + + YE+LEFLGD +L L + Sbjct: 1 MVSTKFLNKLKDEYNIEFNNEKLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ H+ EGEL+ +++V E S+ A E I + + K ++ Sbjct: 61 SDYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARKRKTLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPE 174 DV E+ AL+LD G+ F+ K RD KT+LQE V E Sbjct: 121 EDVFEAFNGALFLDQGMPAVQHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVDIE 180 Query: 175 YKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCS 207 Y V S P H F V ++I+ QG + Sbjct: 181 YTVVSESQLPSH---FVVELKINDKVQTQGEGHN 211 >gi|224045068|ref|XP_002199233.1| PREDICTED: ribonuclease III, nuclear [Taeniopygia guttata] Length = 1338 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1070 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1129 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + F +++D K + T AD++ES Sbjct: 1130 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVTLRTKTLADLLESF 1188 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1189 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1248 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1249 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1295 Score = 97.5 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 54/109 (49%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F + +EG L+ ++V + + +A++L+L F+ Sbjct: 927 NHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELERFM 986 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146 + S + A+ E+LI A+YL+G +E A + Sbjct: 987 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNE 1035 >gi|240013570|ref|ZP_04720483.1| ribonuclease III [Neisseria gonorrhoeae DGI18] gi|240112363|ref|ZP_04726853.1| ribonuclease III [Neisseria gonorrhoeae MS11] gi|240120639|ref|ZP_04733601.1| ribonuclease III [Neisseria gonorrhoeae PID24-1] gi|260441082|ref|ZP_05794898.1| ribonuclease III [Neisseria gonorrhoeae DGI2] Length = 239 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + +R ++ +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 187 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 D F + ++ L + S+ Sbjct: 188 ADDSMFVISCDLGELGFVCRAKGTSR 213 >gi|225024664|ref|ZP_03713856.1| hypothetical protein EIKCOROL_01546 [Eikenella corrodens ATCC 23834] gi|224942553|gb|EEG23762.1| hypothetical protein EIKCOROL_01546 [Eikenella corrodens ATCC 23834] Length = 257 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 62/195 (31%), Positives = 101/195 (51%), Gaps = 5/195 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L++ +G++F N L E+ALTH S S ++ ER EF+GD IL ++ +LF+ F Sbjct: 23 EELQRHLGHSFQNPRLFEQALTHRSYS---AQNNERFEFVGDAILDYSVAKMLFDAFPGY 79 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS +LV+ + +++AR + + + + K SI AD VE+L+AA+ Sbjct: 80 SEGELSRLRANLVNQDVLAEIARSMGVGDALYLGVGELKSGGFDRPSILADAVEALLAAI 139 Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + + +R + +D KT LQE A+ P+Y++ +SG Sbjct: 140 SFDADFAAAEQTVRRLFARRIANIDLSNQGKDPKTLLQEALQARRLPLPKYRIEHQSGEG 199 Query: 185 HDPRFTVVVEISGLA 199 D RF + ++ LA Sbjct: 200 CDARFDIACDLGELA 214 >gi|295425203|ref|ZP_06817906.1| ribonuclease III [Lactobacillus amylolyticus DSM 11664] gi|295064979|gb|EFG55884.1| ribonuclease III [Lactobacillus amylolyticus DSM 11664] Length = 227 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 67/213 (31%), Positives = 100/213 (46%), Gaps = 9/213 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIS 56 M + ++ L ++ G F N LLE+A THSS ++ + E YE+LEFLGD +L L +S Sbjct: 1 MVSTKFLKQLNEKYGIKFHNEKLLEEAFTHSSYANEHPEGVRDYEKLEFLGDAVLELAVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ H+ + EGEL+ +++V E S+ A E I + K ++ Sbjct: 61 DYLYRHYPNLNEGELTRMRSNIVRTEGFSEFAIECGFQDEINLGKGEEKAGARHRKTLLE 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175 DV E+ ALYLD G++ F+ K RD KT+LQE V EY Sbjct: 121 DVFEAFNGALYLDQGMKAVTHFLHLTVYPLIDKGEFDASRDYKTDLQELLQKDGPVNIEY 180 Query: 176 KVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCS 207 S P H F V ++I+ +QG + Sbjct: 181 VTLSESQLPSH---FVVELKINDHVQSQGEGHN 210 >gi|218259360|ref|ZP_03475110.1| hypothetical protein PRABACTJOHN_00767 [Parabacteroides johnsonii DSM 18315] gi|218225152|gb|EEC97802.1| hypothetical protein PRABACTJOHN_00767 [Parabacteroides johnsonii DSM 18315] Length = 286 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 13/231 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M+ YS+L K +G+ N L E+A H S S + + ERLEFLGD IL +++ Sbjct: 15 MNKEPYSSLYKILGFYPDNIHLYEQAFHHKSSSIESSDGRWLNNERLEFLGDAILDAVVA 74 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++FNHF + +EG L+ + +V +T ++VA EL L + S+ V S + Sbjct: 75 DIVFNHFQNKREGFLTNTRSKIVQRDTLNRVAVELGLEKMVVYSAK----VNSHNNYMYG 130 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTP 173 + +E+LI A+YLD G EV F+ ++ + R + K+ L EW+ Sbjct: 131 NALEALIGAIYLDQGYEVCYNFIQNVLIKKYVNLETIARKEVNFKSSLIEWSQKNKLE-I 189 Query: 174 EYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + + D +P F V +S G+ SK+ ++Q AA +K+ Sbjct: 190 SFDLIESFTDNDGNPVFQTGVTLSDTQIGVGIGYSKKESQQSAAKMAIKKL 240 >gi|8886722|gb|AAF80558.1|AF189011_1 ribonuclease III [Homo sapiens] Length = 1374 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1225 IAALYTDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331 Score = 97.8 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 963 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDPFM 1022 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1069 >gi|57530438|ref|NP_001006379.1| ribonuclease 3 [Gallus gallus] gi|53134951|emb|CAG32380.1| hypothetical protein RCJMB04_24a21 [Gallus gallus] Length = 1336 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1068 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1127 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + F +++D K + T AD++ES Sbjct: 1128 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVALRTKTLADLLESF 1186 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1187 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1246 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1247 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1293 Score = 97.5 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F + +EG L+ ++V + + +A++L+L F+ Sbjct: 925 NHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 984 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 985 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1031 >gi|295086176|emb|CBK67699.1| RNAse III [Bacteroides xylanisolvens XB1A] Length = 355 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 15/230 (6%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57 + Y + +G+ N L E+AL H S S + ERLEFLGD IL ++ Sbjct: 29 NRESYLCFYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGD 88 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +++ F+ +EG L+ + +V ET +++A E+ L I+ S+ S + + + Sbjct: 89 IVYKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGN 144 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPE 174 E+ I A+YLD G E F+++ R + K R + K++L EW+ + Sbjct: 145 AFEAFIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKN-KMEVS 203 Query: 175 YKVTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +++ + DHD P F V I GL G SK+ ++Q AA +K+ Sbjct: 204 FELIEQF-LDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252 >gi|240016009|ref|ZP_04722549.1| ribonuclease III [Neisseria gonorrhoeae FA6140] gi|240115103|ref|ZP_04729165.1| ribonuclease III [Neisseria gonorrhoeae PID18] Length = 239 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 105/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + +R ++ +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 187 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 188 ANDSMFVISCDLGELGFVCRAKGTSR 213 >gi|313147996|ref|ZP_07810189.1| ribonuclease III [Bacteroides fragilis 3_1_12] gi|313136763|gb|EFR54123.1| ribonuclease III [Bacteroides fragilis 3_1_12] Length = 294 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 111/227 (48%), Gaps = 13/227 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 Y + +G+ N L E+AL H S + ++ + ERLEFLGD IL ++ ++ Sbjct: 22 ESYFCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIV 81 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + HF+ +EG L+ + +V ET +++A E+ L I+ S+ S + + + Sbjct: 82 YQHFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+ I A+YLD G E F+ K + + K R + K++L EW+ + ++ Sbjct: 138 EAFIGAIYLDRGYECCKQFMQKKIIEPYIDLDKLSRKEVNFKSKLIEWSQKN-KMEVSFE 196 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + +++P F V I G+ G SK+ ++Q AA LK+ Sbjct: 197 LIEQFLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMALKK 243 >gi|194676595|ref|XP_591998.4| PREDICTED: ribonuclease III, nuclear isoform 2 [Bos taurus] gi|297487776|ref|XP_002696436.1| PREDICTED: ribonuclease III, nuclear-like isoform 2 [Bos taurus] gi|296475748|gb|DAA17863.1| ribonuclease III, nuclear-like isoform 2 [Bos taurus] Length = 1330 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1062 KLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1121 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1122 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1180 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1181 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1240 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1241 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1287 Score = 97.8 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 919 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 978 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 979 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1025 >gi|37994704|gb|AAH60265.1| Rnasen protein [Mus musculus] Length = 1231 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 963 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1022 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1023 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1081 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1082 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1141 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1142 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1188 Score = 97.5 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 820 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 879 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 880 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 926 >gi|46190765|ref|ZP_00121069.2| COG0571: dsRNA-specific ribonuclease [Bifidobacterium longum DJO10A] gi|189439904|ref|YP_001954985.1| ribonuclease III [Bifidobacterium longum DJO10A] gi|312133320|ref|YP_004000659.1| rnc [Bifidobacterium longum subsp. longum BBMN68] gi|317482014|ref|ZP_07941039.1| ribonuclease III [Bifidobacterium sp. 12_1_47BFAA] gi|322688500|ref|YP_004208234.1| ribonuclease III [Bifidobacterium longum subsp. infantis 157F] gi|322690510|ref|YP_004220080.1| ribonuclease III [Bifidobacterium longum subsp. longum JCM 1217] gi|90101613|sp|Q8G7H1|RNC_BIFLO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189428339|gb|ACD98487.1| dsRNA-specific ribonuclease [Bifidobacterium longum DJO10A] gi|291517392|emb|CBK71008.1| RNAse III [Bifidobacterium longum subsp. longum F8] gi|311772536|gb|ADQ02024.1| Rnc [Bifidobacterium longum subsp. longum BBMN68] gi|316916581|gb|EFV37978.1| ribonuclease III [Bifidobacterium sp. 12_1_47BFAA] gi|320455366|dbj|BAJ65988.1| ribonuclease III [Bifidobacterium longum subsp. longum JCM 1217] gi|320459836|dbj|BAJ70456.1| ribonuclease III [Bifidobacterium longum subsp. infantis 157F] Length = 242 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 106/220 (48%), Gaps = 10/220 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + L + +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF Sbjct: 13 NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS + S +A+ +L + +I + + + SI D+VESLI Sbjct: 72 DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 131 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A +L+ GI+ A + + + + D KT L AH P Y + S Sbjct: 132 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKEEPVYHM-EVS 190 Query: 182 GPDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEV 219 GP++ FT V + +G G SKR A Q+AAAE Sbjct: 191 GPEYAQIFTARVSLGENGDIIGIGKGSSKRKA-QLAAAEA 229 >gi|296453545|ref|YP_003660688.1| ribonuclease III [Bifidobacterium longum subsp. longum JDM301] gi|296182976|gb|ADG99857.1| Ribonuclease III [Bifidobacterium longum subsp. longum JDM301] Length = 242 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 106/220 (48%), Gaps = 10/220 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + L + +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF Sbjct: 13 NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS + S +A+ +L + +I + + + SI D+VESLI Sbjct: 72 DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGETEQGGAEKNSILCDIVESLI 131 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A +L+ GI+ A + + + + D KT L AH P Y + S Sbjct: 132 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKDEPVYHM-EVS 190 Query: 182 GPDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEV 219 GP++ FT V + +G G SKR A Q+AAAE Sbjct: 191 GPEYAQIFTARVSLGENGDIIGIGKGSSKRKA-QLAAAEA 229 >gi|29123082|gb|AAO65849.1| ribonuclease III [Mus musculus] Length = 1021 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 753 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 812 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + V++D K + T AD++ES Sbjct: 813 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-VTNDKTKRPVALRTKTLADLLESF 871 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 872 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 931 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 932 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 978 Score = 97.5 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 610 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 669 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 670 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 716 >gi|255010202|ref|ZP_05282328.1| ribonuclease III [Bacteroides fragilis 3_1_12] Length = 290 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 111/227 (48%), Gaps = 13/227 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 Y + +G+ N L E+AL H S + ++ + ERLEFLGD IL ++ ++ Sbjct: 18 ESYFCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIV 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + HF+ +EG L+ + +V ET +++A E+ L I+ S+ S + + + Sbjct: 78 YQHFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+ I A+YLD G E F+ K + + K R + K++L EW+ + ++ Sbjct: 134 EAFIGAIYLDRGYECCKQFMQKKIIEPYIDLDKLSRKEVNFKSKLIEWSQKN-KMEVSFE 192 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + +++P F V I G+ G SK+ ++Q AA LK+ Sbjct: 193 LIEQFLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMALKK 239 >gi|227545817|ref|ZP_03975866.1| ribonuclease III [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213933|gb|EEI81772.1| ribonuclease III [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 242 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 106/220 (48%), Gaps = 10/220 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + L + +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF Sbjct: 13 NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS + S +A+ +L + +I + + + SI D+VESLI Sbjct: 72 DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 131 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A +L+ GI+ A + + + + D KT L AH P Y + S Sbjct: 132 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKEEPVYHM-EVS 190 Query: 182 GPDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEV 219 GP++ FT V + +G G SKR A Q+AAAE Sbjct: 191 GPEYAQIFTARVSLGENGDTIGIGKGSSKRKA-QLAAAEA 229 >gi|156553364|ref|XP_001601748.1| PREDICTED: similar to ribonuclease iii [Nasonia vitripennis] Length = 1381 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F++ LL +A T S ++ S +RLEFLGD +L L++S L+ Sbjct: 1019 KLTKFEEGIGVEFSHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1078 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ +T + V +L + + + T +AD++E+ Sbjct: 1079 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNP----KAELKTKDRADLLEAF 1134 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPE 174 + ALY+D G+ F + + R + D K++LQ+ P Sbjct: 1135 LGALYVDKGLLHCQVFCNVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1194 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV GP + +TV V G A+ S + AE +A E L++ Sbjct: 1195 YKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEK 1242 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T SSI+H ERLEFLGD ++ L S LF+ F +EG L+ ++V + + + Sbjct: 870 TESSIAH-----NERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVL 924 Query: 88 ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147 A++L+L ++ + + A+ E+L+ AL+LDGGI +A T + + Sbjct: 925 AKKLNLEQYMLYAHGSDLCHDLELRHAMANCFEALMGALFLDGGIRIADTVFGETLFKNE 984 Query: 148 LKSGKFRRDA-KTELQE 163 + K LQE Sbjct: 985 SDLLNIWVNYPKHPLQE 1001 >gi|239622484|ref|ZP_04665515.1| ribonuclease III [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514481|gb|EEQ54348.1| ribonuclease III [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 272 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 106/220 (48%), Gaps = 10/220 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + L + +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF Sbjct: 43 NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 101 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS + S +A+ +L + +I + + + SI D+VESLI Sbjct: 102 DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 161 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A +L+ GI+ A + + + + D KT L AH P Y + S Sbjct: 162 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKEEPVYHM-EVS 220 Query: 182 GPDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEV 219 GP++ FT V + +G G SKR A Q+AAAE Sbjct: 221 GPEYAQIFTARVSLGENGDIIGIGKGSSKRKA-QLAAAEA 259 >gi|88703551|ref|ZP_01101267.1| ribonuclease III [Congregibacter litoralis KT71] gi|88702265|gb|EAQ99368.1| ribonuclease III [Congregibacter litoralis KT71] Length = 224 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 75/208 (36%), Positives = 107/208 (51%), Gaps = 8/208 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M A ++ LE++ G N +LL +AL+H S+ + ERLEFLGD +LG ++S L+ Sbjct: 1 MDAQQW--LERQFGCRLNNDALLHQALSHRSVG---SRNNERLEFLGDSVLGYVVSEELY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EG+LS SLV ++VARE+ L +R+ R SI AD E Sbjct: 56 RRFPDADEGQLSRLRVSLVKGSALAEVAREITLGEQLRLGVGERHGGGRRRNSILADSFE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+ LD GIE + K + R LK + R+D KT LQE PEY + Sbjct: 116 AILGAIVLDLGIEACRAAILKVFHARFEGLKLEQARKDPKTRLQELLQGSGRPLPEYVLR 175 Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMD 205 +G DH FTV E+ G A+G+ Sbjct: 176 KATGEDHARIFTVACELADGREVAEGIG 203 >gi|307298654|ref|ZP_07578457.1| ribonuclease III [Thermotogales bacterium mesG1.Ag.4.2] gi|306915819|gb|EFN46203.1| ribonuclease III [Thermotogales bacterium mesG1.Ag.4.2] Length = 241 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 71/212 (33%), Positives = 110/212 (51%), Gaps = 10/212 (4%) Query: 19 NRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 +R L+ +AL HSS ++ ES ER+EFLGD +L L ++ L+N + EGE+ Sbjct: 22 DRELVFRALCHSSFTNELAQNGERTLESNERMEFLGDAVLELSLAKTLYNEY-YLTEGEM 80 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 S + S + S VA+ + + FI + R+ + SI AD E+++AA++L GG Sbjct: 81 SKIRAMVGSEKVLSSVAKTMRIGDFIFLGKGERQTGGAERDSILADAFEAVLAAIFLTGG 140 Query: 132 IEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 + V+ FV ++ G+ D KT LQE A+FG P Y+ GP + F Sbjct: 141 LGVSVEFVQSKLSDYIERAVEGELILDYKTSLQELTQARFGSRPLYETLLDEGPPQEKWF 200 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V V + G +G +K+AAEQ+AA L+ Sbjct: 201 KVGVFLDGSLMGEGEGRTKKAAEQLAAKHALE 232 >gi|224282434|ref|ZP_03645756.1| ribonuclease III [Bifidobacterium bifidum NCIMB 41171] gi|310286876|ref|YP_003938134.1| Ribonuclease III [Bifidobacterium bifidum S17] gi|311063777|ref|YP_003970502.1| ribonuclease III [Bifidobacterium bifidum PRL2010] gi|313139580|ref|ZP_07801773.1| ribonuclease 3 [Bifidobacterium bifidum NCIMB 41171] gi|309250812|gb|ADO52560.1| Ribonuclease III [Bifidobacterium bifidum S17] gi|310866096|gb|ADP35465.1| RncS Ribonuclease III [Bifidobacterium bifidum PRL2010] gi|313132090|gb|EFR49707.1| ribonuclease 3 [Bifidobacterium bifidum NCIMB 41171] Length = 255 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 101/220 (45%), Gaps = 9/220 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 L +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF Sbjct: 8 EELFSALGVTIS-PDLLIQALTHRSFSHEHPGTSNYERLEFLGDAVLELVSTETLFTLHP 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS E S +AR +L + FI + + + +SI D+VESLI Sbjct: 67 DMTEGQLAKMRAKAVSEEALSAIARDKLHVGPFILLGHGEAESGGAEKSSILCDIVESLI 126 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A +L+ GIE A V + + + D KT L AH P Y++ S Sbjct: 127 GATFLEHGIEGARKVVHRLIDDTLAEVATEGPALDWKTSLTVKAHELGLDEPRYRM-SVS 185 Query: 182 GPDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEV 219 GP++ FT I +G SKR A+ AA Sbjct: 186 GPEYAQEFTAKATIGPKDDIIGKGTGTSKRKAQLAAAEMA 225 >gi|119631174|gb|EAX10769.1| ribonuclease III, nuclear, isoform CRA_b [Homo sapiens] Length = 1120 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 852 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 911 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 912 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 970 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 971 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1030 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1031 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1077 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 709 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 768 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 769 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 815 >gi|254822109|ref|ZP_05227110.1| ribonuclease III [Mycobacterium intracellulare ATCC 13950] Length = 235 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 9/207 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65 L +G + LL ALTH S ++ + + ERLEFLGD +LGL I+ L++ Sbjct: 6 ALLDALGVELPD-ELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDELYHRHPD 64 Query: 66 AKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+L+ S+V+ + + V R+L L + + + +SI AD +ESL Sbjct: 65 RSEGDLAKLRASVVNTQALADVGRKLCEGGLGVHLLLGRGEANTGGADKSSILADGMESL 124 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A+YL+ GI+VA + + + + D KT LQE A+ P Y VT Sbjct: 125 LGAIYLEHGIDVAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARSMGAPSYVVTS- 183 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS 207 +GPDHD FT VV ++ G+ S Sbjct: 184 TGPDHDKEFTAVVVVADTEYGSGVGRS 210 >gi|160333099|ref|NP_001103942.1| ribonuclease 3 [Danio rerio] gi|124481653|gb|AAI33135.1| Zgc:158612 [Danio rerio] Length = 1289 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1026 KLTNFEDAIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1085 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + F +++D K + T AD++ES Sbjct: 1086 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVALRTKTLADLLESF 1144 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1145 IAALYIDKDLEFVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1204 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1205 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1251 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 56/107 (52%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L++ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 883 NHNERLEFLGDAVVEFLTSVHLYHLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 942 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+GG+E A + Sbjct: 943 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGGLEEAKDLFGRLLF 989 >gi|34784428|gb|AAH57687.1| Rnasen protein [Mus musculus] Length = 942 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 674 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 733 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 734 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 792 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 793 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 852 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 853 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 899 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 531 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 590 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 591 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 637 >gi|315920801|ref|ZP_07917041.1| ribonuclease III [Bacteroides sp. D2] gi|313694676|gb|EFS31511.1| ribonuclease III [Bacteroides sp. D2] Length = 330 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 15/228 (6%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLL 59 Y + +G+ N L E+AL H S S + ERLEFLGD IL ++ ++ Sbjct: 7 ESYLCFYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIV 66 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F+ +EG L+ + +V ET +++A E+ L I+ S+ S + + + Sbjct: 67 YKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 122 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+ I A+YLD G E F+++ R + K R + K++L EW+ + ++ Sbjct: 123 EAFIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKN-KMEVSFE 181 Query: 177 VTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + DHD P F V I GL G SK+ ++Q AA +K+ Sbjct: 182 LIEQF-LDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 228 >gi|237716739|ref|ZP_04547220.1| ribonuclease III [Bacteroides sp. D1] gi|262405515|ref|ZP_06082065.1| ribonuclease III [Bacteroides sp. 2_1_22] gi|298480489|ref|ZP_06998686.1| ribonuclease 3 [Bacteroides sp. D22] gi|229442722|gb|EEO48513.1| ribonuclease III [Bacteroides sp. D1] gi|262356390|gb|EEZ05480.1| ribonuclease III [Bacteroides sp. 2_1_22] gi|298273310|gb|EFI14874.1| ribonuclease 3 [Bacteroides sp. D22] Length = 331 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 15/228 (6%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLL 59 Y + +G+ N L E+AL H S S + ERLEFLGD IL ++ ++ Sbjct: 7 ESYLCFYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIV 66 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F+ +EG L+ + +V ET +++A E+ L I+ S+ S + + + Sbjct: 67 YKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 122 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+ I A+YLD G E F+++ R + K R + K++L EW+ + ++ Sbjct: 123 EAFIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKN-KMEVSFE 181 Query: 177 VTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + DHD P F V I GL G SK+ ++Q AA +K+ Sbjct: 182 LIEQF-LDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 228 >gi|162447098|ref|YP_001620230.1| dsRNA-specific ribonuclease III [Acholeplasma laidlawii PG-8A] gi|161985205|gb|ABX80854.1| dsRNA-specific ribonuclease III [Acholeplasma laidlawii PG-8A] Length = 219 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 9/218 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDS 65 + L K++ + L +ALTH+S +H Q + ERLEFLGD ++ L++ST LF H D Sbjct: 2 NDLLKQLNIETKHIDLYLQALTHTSYAHENQTDHNERLEFLGDAVIELMMSTYLFTH-DQ 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 + +G L+ R V E A+++DL S +R+ + + S+ AD E+ A Sbjct: 61 SNQGVLTKRRAQAVREEALVLYAQKMDLESKMRLGNGEQIA----KPSMIADAFEAFFGA 116 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LY+D G + +K L + +D KT+LQE+ + YK GP H Sbjct: 117 LYMDQGFDKTYEIFNKVVIPH-LNLVEHIKDYKTQLQEFIQLERKSL-SYKTVKVGGPSH 174 Query: 186 DPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKR 222 P F V + + G S + AEQ AA E L + Sbjct: 175 RPIFKSEVFLENSIMLGTGQGSSTKEAEQNAAKEALSK 212 >gi|58337573|ref|YP_194158.1| ribonuclease III [Lactobacillus acidophilus NCFM] gi|227904215|ref|ZP_04022020.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus ATCC 4796] gi|75432899|sp|Q5FJJ7|RNC_LACAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|58254890|gb|AAV43127.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus NCFM] gi|227868234|gb|EEJ75655.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus ATCC 4796] Length = 228 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 66/214 (30%), Positives = 98/214 (45%), Gaps = 10/214 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLI 55 M + ++ + L+ F N LLE+A THSS S+ + + YE+LEFLGD +L L + Sbjct: 1 MVSTKFLNKLKNEYNIEFNNEKLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ H+ EGEL+ +++V E S+ A E I + + K ++ Sbjct: 61 SNYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARNRKTLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPE 174 DV E+ AL+LD G+ F+ K RD KT+LQE V E Sbjct: 121 EDVFEAFNGALFLDQGMPAVERFLHLTVYPLIAKGEFDDSRDYKTDLQELLQQNGPVNIE 180 Query: 175 YKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCS 207 Y V S P H F V ++I+ QG + Sbjct: 181 YSVISESQLPSH---FVVELKINDQVQTQGEGHN 211 >gi|213691313|ref|YP_002321899.1| Ribonuclease III [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522774|gb|ACJ51521.1| Ribonuclease III [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457380|dbj|BAJ68001.1| ribonuclease III [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 242 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 106/220 (48%), Gaps = 10/220 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + L + +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF Sbjct: 13 NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS + S +A+ +L + +I + + + SI D+VESLI Sbjct: 72 DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 131 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A +L+ GI+ A + + + + D KT L AH P Y + S Sbjct: 132 GATFLEHGIDEARKVLHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKEEPVYHM-EVS 190 Query: 182 GPDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEV 219 GP++ FT V + +G G SKR A Q+AAAE Sbjct: 191 GPEYAQIFTARVSLGENGDIIGIGKGSSKRKA-QLAAAEA 229 >gi|75909289|ref|YP_323585.1| ribonuclease III [Anabaena variabilis ATCC 29413] gi|75703014|gb|ABA22690.1| RNAse III [Anabaena variabilis ATCC 29413] Length = 228 Score = 201 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 87/197 (44%), Gaps = 8/197 (4%) Query: 17 FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F + LL +ALTH S + E ERLEFLGD IL L L+ E EL+ Sbjct: 7 FRDEKLLRRALTHRSYVNENPEEGEHNERLEFLGDAILNFLSGEYLYRSHPDRGEDELTR 66 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD--GG 131 R ++LV + ++ A E+ L +R+ +D ++ + E++I A YLD Sbjct: 67 RRSALVDEKQLAKFAIEVGLDFRMRLGKGAIRDGGYQNPNLLSSTFEAVIGAYYLDNNSN 126 Query: 132 IEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTFRSGPDHDPR 188 IE ++ ++ + + D+K QEW G T P+Y SGP H P Sbjct: 127 IEAVRVIIEPLFESVPEQIVVVRSNVDSKNRFQEWVQRNIGPTPPKYLTKQISGPSHAPE 186 Query: 189 FTVVVEISGLAPAQGMD 205 F V + +G+ Sbjct: 187 FQAKVLVGEKEYGEGIG 203 >gi|299147039|ref|ZP_07040106.1| ribonuclease 3 [Bacteroides sp. 3_1_23] gi|298514924|gb|EFI38806.1| ribonuclease 3 [Bacteroides sp. 3_1_23] Length = 355 Score = 201 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 15/228 (6%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLL 59 Y + +G+ N L E+AL H S S + ERLEFLGD IL ++ ++ Sbjct: 31 ESYLCFYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIV 90 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F+ +EG L+ + +V ET +++A E+ L I+ S+ S + + + Sbjct: 91 YKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 146 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+ I A+YLD G E F+++ R + K R + K++L EW+ + ++ Sbjct: 147 EAFIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKN-KMEVSFE 205 Query: 177 VTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + DHD P F V I GL G SK+ ++Q AA +K+ Sbjct: 206 LIEQF-LDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252 >gi|154493472|ref|ZP_02032792.1| hypothetical protein PARMER_02811 [Parabacteroides merdae ATCC 43184] gi|154086682|gb|EDN85727.1| hypothetical protein PARMER_02811 [Parabacteroides merdae ATCC 43184] Length = 301 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 13/231 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M+ YS+L K +G+ N L E+A H S S + + ERLEFLGD +L +++ Sbjct: 15 MNKEPYSSLYKILGFYPDNIHLYEQAFLHKSSSVESGDGRWLNNERLEFLGDAVLDAVVA 74 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +++ HF + +EG L+ + +V ET ++VA EL L + S+ L S + Sbjct: 75 DIVYKHFQNKREGFLTNTRSKIVQRETMNRVAVELGLDKMVVYSAKL----SSHNNHMYG 130 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTP 173 + +E+LI A+YLD G EV F+ ++ + R + K+ L EW+ Sbjct: 131 NALEALIGAIYLDQGYEVCYNFIQNVLIKKHVNLETIARKEVNFKSSLIEWSQKNKLE-I 189 Query: 174 EYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + + D +P F V +S G+ SK+ ++Q AA +K+ Sbjct: 190 SFDLIESFTDNDGNPVFQTGVTLSDTQIGVGIGYSKKESQQSAAKMAIKKL 240 >gi|7022183|dbj|BAA91511.1| unnamed protein product [Homo sapiens] Length = 769 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 501 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 560 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 561 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 619 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 620 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 679 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 680 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 726 Score = 96.7 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 358 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 417 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 418 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 464 >gi|291456081|ref|ZP_06595471.1| ribonuclease III [Bifidobacterium breve DSM 20213] gi|291382490|gb|EFE90008.1| ribonuclease III [Bifidobacterium breve DSM 20213] Length = 247 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 104/220 (47%), Gaps = 10/220 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + L + +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF Sbjct: 18 NELLEALGTTIS-PDLLVQALTHRSFSHEHPGVSNYERLEFLGDAVLELVTTETLFTIHP 76 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS + S +A+ +L + +I + + + SI D+VESLI Sbjct: 77 DMNEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 136 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A +L+ GI+ A + + + + D KT L AH P Y + S Sbjct: 137 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHHLGKAEPVYHM-EVS 195 Query: 182 GPDHDPRFTVVVEISG--LAPAQGMDCSKRAAEQVAAAEV 219 GP++ FT V + G SKR A Q+AAAE Sbjct: 196 GPEYAQIFTAKVTLGDNPEIIGTGKGSSKRKA-QLAAAEA 234 >gi|116618659|ref|YP_819030.1| dsRNA-specific ribonuclease [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271141|sp|Q03VW5|RNC_LEUMM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116097506|gb|ABJ62657.1| RNAse III [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 236 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 9/218 (4%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 MS + + + K+ +F + SLL +ALT + + + + Y+RLEFLGD ++ +++ Sbjct: 1 MSQDSFKSYILKKFNISFNDESLLTEALTQRNYLNEHPDEKGRDYQRLEFLGDSVMQMIV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + LF + EG+L+ ++V + + +R + L IR+ S+ Sbjct: 61 AEYLFKRYPDWHEGQLTEMRIAMVQTRSFAHFSRMVHLNEGIRLGKGEEMSGARDRDSLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTP 173 D+ E+ I ALYLD G +V F+++ A+ + F R D K+ LQE K V Sbjct: 121 EDIWEAFIGALYLDQGADVVRQFLNQTLFA-AIDTDFFDRFIDFKSRLQERLQTKGSVDI 179 Query: 174 EYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRA 210 +Y+ D+ F V + A+G S + Sbjct: 180 DYQTEKEEQLSDNTQLFEASVSANDKELARGTGKSIKD 217 >gi|153807268|ref|ZP_01959936.1| hypothetical protein BACCAC_01546 [Bacteroides caccae ATCC 43185] gi|149130388|gb|EDM21598.1| hypothetical protein BACCAC_01546 [Bacteroides caccae ATCC 43185] Length = 329 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 13/227 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLL 59 Y + +G+ N L E+AL H S S + ERLEFLGD IL ++ ++ Sbjct: 31 ESYLCFYRILGFYPRNIQLYEQALLHKSSSVRSDKGRPLNNERLEFLGDAILDAIVGDIV 90 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F+ +EG L+ + +V ET +++A E+ L I+ S+ S + + + Sbjct: 91 YKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 146 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+ I A+YLD G E F+++ R + K R + K++L EW+ K + ++ Sbjct: 147 EAFIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQ-KSKLEVSFE 205 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + D +P F V I GL G SK+ ++Q AA +K+ Sbjct: 206 LIEQFLDQDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252 >gi|59800710|ref|YP_207422.1| ribonuclease III [Neisseria gonorrhoeae FA 1090] gi|75432565|sp|Q5F9X7|RNC_NEIG1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|59717605|gb|AAW89010.1| putative ribonuclease III [Neisseria gonorrhoeae FA 1090] Length = 239 Score = 201 bits (512), Expect = 7e-50, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 11 HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA Sbjct: 68 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + +R ++ +D KT LQE A+ P+Y++ + G Sbjct: 128 VSFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 187 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208 D F + ++ L + S+ Sbjct: 188 ADDSMFVISCDLGELGFVCRAKGTSR 213 >gi|237720469|ref|ZP_04550950.1| ribonuclease III [Bacteroides sp. 2_2_4] gi|229450220|gb|EEO56011.1| ribonuclease III [Bacteroides sp. 2_2_4] Length = 328 Score = 201 bits (512), Expect = 7e-50, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 15/228 (6%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLL 59 Y + +G+ N L E+AL H S S + ERLEFLGD IL ++ ++ Sbjct: 7 ESYLCFYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIV 66 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F+ +EG L+ + +V ET +++A E+ L I+ S+ S + + + Sbjct: 67 YKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 122 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+ I A+YLD G E F+++ R + K R + K++L EW+ + ++ Sbjct: 123 EAFIGAIYLDQGYERCKLFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKN-KMEVSFE 181 Query: 177 VTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + DHD P F V I GL G SK+ ++Q AA +K+ Sbjct: 182 LIEQF-LDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 228 >gi|114600835|ref|XP_001157306.1| PREDICTED: ribonuclease III, nuclear isoform 3 [Pan troglodytes] Length = 762 Score = 201 bits (512), Expect = 7e-50, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 494 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 553 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 554 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 612 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 613 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 672 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 673 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 719 Score = 96.7 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 351 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 410 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 411 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 457 >gi|227432061|ref|ZP_03914075.1| dsRNA-specific ribonuclease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352178|gb|EEJ42390.1| dsRNA-specific ribonuclease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 236 Score = 201 bits (512), Expect = 7e-50, Method: Composition-based stats. Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 7/217 (3%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 MS + + + K+ +F + SLL +ALT + + + + Y+RLEFLGD ++ +++ Sbjct: 1 MSQDSFKSYILKKFNVSFNDESLLTEALTQRNYLNEHPDEKGRDYQRLEFLGDSVMQMIV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + LF + EG+L+ ++V + + +R + L IR+ S+ Sbjct: 61 AEYLFKRYPDWHEGQLTEMRIAMVQTRSFAHFSRMVHLNEGIRLGKGEEMSGARDRDSLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 D+ E+ I ALYLD G +V F+++ + D K+ LQE K V + Sbjct: 121 EDIWEAFIGALYLDQGADVVRQFLNQTLFAAIDTDFFDHFIDFKSRLQERLQTKGSVDID 180 Query: 175 YKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRA 210 Y+ D+ F V + A+G S + Sbjct: 181 YQTEKEEQISDNTQLFEASVSANDKELARGTGKSIKD 217 >gi|293446921|ref|ZP_06663343.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B088] gi|291323751|gb|EFE63179.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B088] Length = 182 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 3/169 (1%) Query: 45 FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 FLGD IL +I+ L++ F EG++S +LV T +++ARE +L +R+ Sbjct: 1 FLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGEL 60 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQ 162 K SI AD VE+LI ++LD I+ + +++ R + G ++D KT LQ Sbjct: 61 KSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQ 120 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 E+ + P Y V G HD FT+ ++SGL P G S+R Sbjct: 121 EYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 169 >gi|157326505|gb|ABV44384.1| ASL1/DROSHA fusion [Mus musculus] Length = 756 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 488 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 547 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 548 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 606 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 607 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 666 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 667 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 713 Score = 96.3 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 345 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 404 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 405 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 451 >gi|160883983|ref|ZP_02064986.1| hypothetical protein BACOVA_01957 [Bacteroides ovatus ATCC 8483] gi|156110713|gb|EDO12458.1| hypothetical protein BACOVA_01957 [Bacteroides ovatus ATCC 8483] Length = 352 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 15/228 (6%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLL 59 Y + +G+ N L E+AL H S S + ERLEFLGD IL ++ ++ Sbjct: 31 ESYLCFYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIV 90 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F+ +EG L+ + +V ET +++A E+ L I+ S+ S + + + Sbjct: 91 YKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 146 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+ I A+YLD G E F+++ R + K R + K++L EW+ + ++ Sbjct: 147 EAFIGAIYLDQGYERCKLFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKN-KMEVSFE 205 Query: 177 VTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + DHD P F V I GL G SK+ ++Q AA +K+ Sbjct: 206 LIEQF-LDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252 >gi|27552890|gb|AAH41162.1| RNASEN protein [Homo sapiens] Length = 722 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 454 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 513 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 514 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 572 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 573 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 632 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 633 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 679 Score = 96.3 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 311 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 370 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 371 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 417 >gi|118462414|ref|YP_882955.1| ribonuclease III [Mycobacterium avium 104] gi|254776229|ref|ZP_05217745.1| ribonuclease III [Mycobacterium avium subsp. avium ATCC 25291] gi|118163701|gb|ABK64598.1| ribonuclease III [Mycobacterium avium 104] Length = 237 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 102/206 (49%), Gaps = 9/206 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L +G + LL ALTH S ++ + + ERLEFLGD +LGL I+ L++ Sbjct: 7 LLDALGVELPD-ELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDALYHRHPDR 65 Query: 67 KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ S+V+ + + VAR+L L + + + + +SI AD +ESL+ Sbjct: 66 TEGDLAKLRASVVNTQALADVARKLCDGGLGAHLLLGRGEANTGGADKSSILADGMESLL 125 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YL GI+ A + + + + D KT LQE A+ P Y VT + Sbjct: 126 GAIYLQHGIDTAREVILRLFGALLDAAPTLGAGLDWKTSLQELTAARGMGAPSYLVTS-T 184 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCS 207 GPDHD FT VV ++ G+ S Sbjct: 185 GPDHDKEFTAVVVVADTEYGTGVGRS 210 >gi|33585614|gb|AAH55696.1| Rnasen protein [Mus musculus] Length = 780 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 512 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 571 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 572 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 630 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 631 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 690 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 691 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 737 Score = 96.3 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 369 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 428 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 429 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 475 >gi|288817568|ref|YP_003431915.1| ribonuclease III [Hydrogenobacter thermophilus TK-6] gi|288786967|dbj|BAI68714.1| ribonuclease III [Hydrogenobacter thermophilus TK-6] gi|308751168|gb|ADO44651.1| ribonuclease III [Hydrogenobacter thermophilus TK-6] Length = 232 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 71/214 (33%), Positives = 107/214 (50%), Gaps = 9/214 (4%) Query: 14 GYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 GY F ++ LLE+ALTH S + +SYE LEFLGD ++ L + +L F AKEG+L+ Sbjct: 17 GYTFRDKKLLEQALTHKSYAVEKGVKSYETLEFLGDALINLFVVDILLQEFPQAKEGQLA 76 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 VS E Q+A+EL + +K SI D ESL A+Y+D G Sbjct: 77 PMKAFFVSEEFLHQLAQEL--ELEKYLLLGGKKGKFKVNVSILGDAFESLWGAIYIDTGR 134 Query: 133 EV--AGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 + + ++ +K R + +++D KT LQE ++ P Y+V SGP H Sbjct: 135 DTNFTRSLFERLYKNRIITMARSSDYKKDYKTILQEITQKRWKERPTYRVVSVSGPQHGK 194 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V + + A +K+ AEQ++A VL+ Sbjct: 195 VFEVECSVRNIR-AVAAGSNKKEAEQLSAKRVLE 227 >gi|170017643|ref|YP_001728562.1| dsRNA-specific ribonuclease [Leuconostoc citreum KM20] gi|238688973|sp|B1N016|RNC_LEUCK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|169804500|gb|ACA83118.1| dsRNA-specific ribonuclease [Leuconostoc citreum KM20] Length = 233 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 9/218 (4%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 MS + L F N +LL +ALT + + + + Y+RLEFLGD ++ + + Sbjct: 1 MSQDSFKQYLLSEFNIQFNNETLLLEALTQRNYLNEHPDEPGRDYQRLEFLGDSVMQVSV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + LF + + EG+L+ ++V + + +R L IR+ S+ Sbjct: 61 AEYLFKRYPNWHEGQLTEMRIAMVQTRSFAHFSRVAHLNEGIRLGKGEEMSGARDRDSLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTP 173 D+ E+ I ALYLD G E F+D+ A+ + F R D K+ LQE V Sbjct: 121 EDIWEAFIGALYLDQGFEAVRKFLDQTLFA-AVDTDFFDRFIDFKSRLQEKLQKNGAVDI 179 Query: 174 EYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRA 210 +Y+ H+ F V + A+G S + Sbjct: 180 DYRTENEQQLSHNAQLFEASVSVDDHELARGTGKSIKD 217 >gi|186681704|ref|YP_001864900.1| ribonuclease III [Nostoc punctiforme PCC 73102] gi|186464156|gb|ACC79957.1| ribonuclease III [Nostoc punctiforme PCC 73102] Length = 239 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 115/222 (51%), Gaps = 10/222 (4%) Query: 5 RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + +L +++G + LL+ ALTH ++S S +YE+LEF+GD ++ L+ + +L+ Sbjct: 11 QLESLVQKLGLSREAPIKWELLDLALTHPTVSDSA--NYEQLEFVGDAVVRLVSAVVLWE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ G+ + + LVS +Q+AR L ++ V+ D S AD E+ Sbjct: 69 NYPDCPVGDFAAIRSVLVSDRILAQLARIYGLELYLLVAGSATADKVGQ-ESRLADAFEA 127 Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ ALYL +E+ +++D ++++ ++ R + K LQEW A+F V PEY+V Sbjct: 128 VLGALYLSTQNLELIRSWLDPHFQELTTEIRLDPARLNYKAALQEWTQAQFKVLPEYRVV 187 Query: 179 FRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + P H+ RF V + G +G S + AEQ AA Sbjct: 188 EVTQPHHNQERFMAEVWLHGKKLGEGKGRSIKTAEQAAAKVA 229 >gi|283769480|ref|ZP_06342376.1| ribonuclease III [Bulleidia extructa W1219] gi|283103748|gb|EFC05134.1| ribonuclease III [Bulleidia extructa W1219] Length = 226 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 8/210 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFN 61 + G + L+E+ALTHSS ++ + + ERLEF+GD +L L S ++ Sbjct: 1 MDIHNFLTAQGIKVDHFELIEQALTHSSYANEHGSKADNERLEFMGDAVLQLWSSAQIYP 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG+++ + LV + +R+L L +IR+ +I AD +E+ Sbjct: 61 L--NLSEGQMTRLRSQLVCESALANYSRQLGLNQYIRLGKGEEHSGGREKDAIIADALEA 118 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF----RRDAKTELQEWAHAKFGVTPEYKV 177 + AL+LD G+ + + ++ + + D KT LQE A + Y++ Sbjct: 119 FLGALFLDQGMLAVDLILRQVITPHLQQAKEIVQGVQLDYKTRLQEVVQADSRRSLVYQL 178 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 GP + P F + + GL G S Sbjct: 179 VSEKGPSNAPTFMMNAVVDGLVLGTGSGGS 208 >gi|41409093|ref|NP_961929.1| ribonuclease III [Mycobacterium avium subsp. paratuberculosis K-10] gi|81413486|sp|Q73VL8|RNC_MYCPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|41397452|gb|AAS05312.1| Rnc [Mycobacterium avium subsp. paratuberculosis K-10] Length = 237 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 102/206 (49%), Gaps = 9/206 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L +G + LL ALTH S ++ + + ERLEFLGD +LGL I+ L++ Sbjct: 7 LLDALGVELPD-ELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDALYHRHPDR 65 Query: 67 KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ S+V+ + + VAR+L L + + + + +SI AD +ESL+ Sbjct: 66 TEGDLAKLRASVVNTQALADVARKLCDGGLGAHLLLGRGEANTGGADKSSILADGMESLL 125 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YL GI+ A + + + + D KT LQE A+ P Y VT + Sbjct: 126 GAIYLQHGIDTAREVILRLFGALLDAAPTLGAGLDWKTSLQELTAARGMGAPSYLVTS-T 184 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCS 207 GPDHD FT VV ++ G+ S Sbjct: 185 GPDHDKEFTAVVVVADTEYGTGVGRS 210 >gi|320541047|ref|ZP_08040477.1| RNase III [Serratia symbiotica str. Tucson] gi|320028891|gb|EFW11140.1| RNase III [Serratia symbiotica str. Tucson] Length = 172 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 3/168 (1%) Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ F EG++S +LV T +++ARE DL +R+ K S SI AD Sbjct: 2 LYQRFPHIDEGDMSRMRATLVRGHTLAEMAREFDLGECLRLGPGELKSGGSRRESILADT 61 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 VE+LI ++LD ++ + +++ R + G ++D KT LQE P Y Sbjct: 62 VEALIGGVFLDSDMQRVERLILDWYRSRLDEISPGDKQKDPKTRLQELLQGHHLPLPSYL 121 Query: 177 VTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 V G HD FT+ ++SGL P G+ S+R AEQ AA + LK+ Sbjct: 122 VVQVRGEAHDQEFTIHCQVSGLNEPVMGIGSSRRKAEQAAAEQTLKKL 169 >gi|73953916|ref|XP_868245.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 6 [Canis familiaris] Length = 635 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 367 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 426 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 427 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 485 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 486 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 545 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 546 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 592 Score = 96.3 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 224 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 283 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 284 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 330 >gi|284022406|gb|ADB65770.1| drosha [Marsupenaeus japonicus] Length = 400 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 103/226 (45%), Gaps = 14/226 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 S E+ IG F + LL +A T S ++ S +RLEFLGD +L L+ S L+ + Sbjct: 141 NLSKFEESIGVHFNHIRLLARAFTDRSIGFNNLTLGSNQRLEFLGDTVLQLVASEYLYKY 200 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + ++ S T +AD++E+ Sbjct: 201 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTAYTMYS----HLKTELKTKDRADLLEAF 256 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPE 174 + ALY+D G++ F + R + + D K++LQ+ P Sbjct: 257 LGALYIDRGLDYCRAFCQVCFFPRLHQFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPI 316 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 YKV GP + +TV V G A+ S + AE AA E L Sbjct: 317 YKVIECKGPTNTRVYTVAVYFRGRRLAKASGHSIQQAEMNAAREAL 362 Score = 84.7 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 51/115 (44%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 EF GD ++ L S LF+ F S +EG L+ ++V + + +A +L L F+ + Sbjct: 2 FEFFGDAVVEFLTSIHLFHLFPSLEEGGLATYRAAIVQNQHLAVLAEKLGLDQFMLYAHG 61 Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + A+ E+L+ A++LD GIE A + + Q + Sbjct: 62 SDLCHDFELRHAMANCFEALMGAIFLDTGIEDADSVLSSTLFQGEDLLHSIWVNY 116 >gi|165973380|ref|NP_001107152.1| drosha, ribonuclease type III [Xenopus (Silurana) tropicalis] gi|163916533|gb|AAI57521.1| rnasen protein [Xenopus (Silurana) tropicalis] Length = 1325 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL + T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1061 KLTKFEEAIGVEFTHVRLLARVFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1120 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + F +++D K T AD++ES Sbjct: 1121 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVVLRTKTLADLLESF 1179 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1180 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1239 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 1240 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1286 Score = 97.5 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F +EG L+ ++V + + +A++L+L F+ Sbjct: 918 NHNERLEFLGDAVVEFLTSVHLYYLFPLLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 977 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+L+ A+YL+GG+E A + Sbjct: 978 LYAHGPDLCRESDLRHAMANCFEALMGAVYLEGGLEEAKQLFGRLLF 1024 >gi|315038614|ref|YP_004032182.1| ribonuclease III [Lactobacillus amylovorus GRL 1112] gi|312276747|gb|ADQ59387.1| ribonuclease III [Lactobacillus amylovorus GRL 1112] Length = 228 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 67/214 (31%), Positives = 98/214 (45%), Gaps = 10/214 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ L+ F N LLE+A THSS S+ + + YE+LEFLGD +L L + Sbjct: 1 MVSTKFLKKLKDEYNVKFNNEKLLEEAFTHSSYSNEHPDAGIRDYEKLEFLGDAVLELAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ H+ EGEL+ +++V E S+ A E I + + K ++ Sbjct: 61 SNYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARNRKTLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPE 174 DV E+ ALYLD G+ F+ K RD KT+LQE V E Sbjct: 121 EDVFEAFNGALYLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVNIE 180 Query: 175 YKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCS 207 Y V S P H F V ++I+ A +G + Sbjct: 181 YSVISESQLPSH---FEVELKINDEAKTRGEGHN 211 >gi|260907271|ref|ZP_05915593.1| ribonuclease III [Brevibacterium linens BL2] Length = 234 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 59/211 (27%), Positives = 86/211 (40%), Gaps = 6/211 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M + L+K +G + ALTH S + + ERLEFLGD +LGL+ + Sbjct: 1 MDTDTTAELQKSLGIDI-DPETFRLALTHRSFAFEAGGIPTNERLEFLGDSVLGLVATES 59 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ EG L+ +++V+ + +AR + I + SI AD Sbjct: 60 LYYDNPDLAEGSLAKMRSAVVNTRALASIARRHGIGPHILLGKGEELTGGRDKDSILADT 119 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYK 176 VE+LI A ++ G E A FV + + D KT LQE A Y+ Sbjct: 120 VEALIGATFVARGREEAFAFVHRLIDSMLSDAVNLGAGMDYKTTLQEAAADLDLGAVSYE 179 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + SGPDH FT + G S Sbjct: 180 IVS-SGPDHAMVFTATALLGANGWGTGDGSS 209 >gi|311115015|ref|YP_003986236.1| ribonuclease III [Gardnerella vaginalis ATCC 14019] gi|310946509|gb|ADP39213.1| ribonuclease III [Gardnerella vaginalis ATCC 14019] Length = 298 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 103/221 (46%), Gaps = 11/221 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65 L + +G + LL +ALTH S SH + ++YERLEFLGD +L L+ + LF+ Sbjct: 64 ELLRALGTTIS-PDLLVEALTHRSFSHEHPGTKNYERLEFLGDAVLELVSTETLFSAHPD 122 Query: 66 AKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ VS S VAR +L + +I + + + SI D+VE+LI Sbjct: 123 MTEGQLAKLRAKAVSEWALSAVARDKLHVGPYILLGHGEMEHGGAQKDSILCDIVEALIG 182 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +++ GI+ A V + + + D KT L AH P+Y++ SG Sbjct: 183 ATFVEHGIDEARAVVHRLIDDTLAEVLTEGPALDWKTSLTVLAHEMGLDEPQYRM-SVSG 241 Query: 183 PDHDPRFTVVVEI----SGLAPAQGMDCSKRAAEQVAAAEV 219 PD+ P F + + SKR A+ AA + Sbjct: 242 PDYAPVFHARAVLAHESGDELLGEADGSSKRKAQLAAADKA 282 >gi|158297080|ref|XP_555381.3| AGAP008087-PA [Anopheles gambiae str. PEST] gi|157015023|gb|EAL39656.3| AGAP008087-PA [Anopheles gambiae str. PEST] Length = 1404 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 101/227 (44%), Gaps = 14/227 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + E IG F + LL +A T S ++ S +RLEFLGD +L L+ S L+ HF Sbjct: 950 LTRFEDSIGVQFNHIRLLARAFTDRSIGFTNLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1009 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS+ +SLV+ T + V +L + + S+ T +AD++E+ + Sbjct: 1010 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTQYAVYSNP----KADLKTKDRADLLEAFL 1065 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPEY 175 ALY+D G+E F R + D K++LQ+ P Y Sbjct: 1066 GALYVDKGLEYCEMFCHVCLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPVY 1125 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 KV +GP + ++V V G A S + AE AA + L+ Sbjct: 1126 KVIECTGPTNTRVYSVAVYFRGKRLACADGHSIQQAEMNAAKQALEN 1172 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 51/215 (23%), Positives = 77/215 (35%), Gaps = 56/215 (26%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--------------------------------- 31 + LE+ IGY F NR L+ ALTH S Sbjct: 717 SLNVLERYIGYTFTNRYTLQLALTHPSYKENFGTNPDHARNSLTNCGIRQPEYGDRKIHY 776 Query: 32 -----------------ISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSAKEG 69 ++ ERLEFLGD ++ + S LF+ F +EG Sbjct: 777 MNTRKRGINTLISIMSRFGKEHETDSNITHNERLEFLGDAVVEFITSIHLFHMFPDLEEG 836 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 L+ ++V + + +A++L L F+ + + A+ E+L+ AL LD Sbjct: 837 GLATYRAAIVQNQHLAVLAKKLHLEEFMLYAHGSDLCHELELRHALANCFEALMGALLLD 896 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKT-ELQE 163 GGIEVA Q + + LQE Sbjct: 897 GGIEVADRVFAYALFQEDDTLRGIWVNYPSHPLQE 931 >gi|4768838|gb|AAD29637.1|AF116910_1 putative ribonuclease III [Homo sapiens] Length = 541 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 273 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 332 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 333 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 391 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 392 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 451 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 452 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 498 Score = 95.9 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 130 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 189 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 190 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 236 >gi|325957095|ref|YP_004292507.1| ribonuclease III [Lactobacillus acidophilus 30SC] gi|325333660|gb|ADZ07568.1| ribonuclease III [Lactobacillus acidophilus 30SC] gi|327183818|gb|AEA32265.1| ribonuclease III [Lactobacillus amylovorus GRL 1118] Length = 228 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 67/214 (31%), Positives = 98/214 (45%), Gaps = 10/214 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ L+ F N LLE+A THSS S+ + + YE+LEFLGD +L L + Sbjct: 1 MVSTKFLKKLKDEYNVKFNNEKLLEEAFTHSSYSNEHPDAGIRDYEKLEFLGDAVLELAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ H+ EGEL+ +++V E S+ A E I + + K ++ Sbjct: 61 SNYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARSRKTLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPE 174 DV E+ ALYLD G+ F+ K RD KT+LQE V E Sbjct: 121 EDVFEAFNGALYLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVNIE 180 Query: 175 YKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCS 207 Y V S P H F V ++I+ A +G + Sbjct: 181 YSVISESQLPSH---FEVELKINDEAKTRGEGHN 211 >gi|194246455|ref|YP_002004094.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma mali] gi|259491959|sp|B3R075|RNC_PHYMT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|193806812|emb|CAP18239.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma mali] Length = 225 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 7/206 (3%) Query: 19 NRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 SL + ++THSS ++ + + ERLEFLGD ++ LL++ L+ + EG +S + Sbjct: 15 QISLYKMSITHSSYANENKLKKKDNERLEFLGDAVINLLMADYLYTKKEKENEGFMSKKR 74 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 V ++ A+ + L ++I + + + SI A+ E+L A+YLD G +A Sbjct: 75 AQSVCEDSLVIYAKSIQLQNYILLGKGEKN--KNINNSILANAFEALFGAIYLDLGYYIA 132 Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 R L + D KT+LQE ++ T Y +T G DH FT V + Sbjct: 133 KKVFILIVIPR-LSNIIDNIDFKTQLQELVQSQKK-TISYYITEEKGLDHSKEFTAEVFL 190 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLK 221 +G +K++AEQ AA VL Sbjct: 191 EKKNVGRGFGKTKKSAEQDAARYVLN 216 >gi|321475336|gb|EFX86299.1| hypothetical protein DAPPUDRAFT_442 [Daphnia pulex] Length = 939 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 105/228 (46%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E+ IG F + LL +A T S ++ S +RLEFLGD +L L+ S L+ Sbjct: 700 KMVEFEESIGIKFTHIRLLARAFTDRSIGFNNLTLGSNQRLEFLGDTVLQLIASEYLYKF 759 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + ++ SS T +AD++E+ Sbjct: 760 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTNYALYSSP----KAELKTKDRADLLEAF 815 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPE 174 + ALY+D G+E TF + R + D K++LQ+ P Sbjct: 816 LGALYVDKGLEDCQTFCQVCFFPRLQDFILHQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 875 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV GP + ++V V G+ A S + AE AA E L++ Sbjct: 876 YKVIECKGPTNTRVYSVAVYFRGIRLASASGHSIQQAEMNAAKEALEK 923 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 8/144 (5%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T SSI+H ERLEFLGD ++ L S L++ F +EG L+ ++V + +Q+ Sbjct: 551 TESSITH-----NERLEFLGDAVVEFLASIHLYHMFPDLEEGGLATYRAAIVQNQHLAQL 605 Query: 88 ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147 A+ L L F+ + + A+ E+L+ AL+LDGGI VA Sbjct: 606 AKNLQLDQFMLYAHGSDLCHDLELRHAMANCFEALMGALFLDGGINVADRVFSNTLFMNE 665 Query: 148 LKSGKFRRDAKT-ELQEWAHAKFG 170 + + LQE G Sbjct: 666 KDLLDVWVNYPSHPLQE--QELGG 687 >gi|308235889|ref|ZP_07666626.1| ribonuclease III [Gardnerella vaginalis ATCC 14018] Length = 309 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 103/221 (46%), Gaps = 11/221 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65 L + +G + LL +ALTH S SH + ++YERLEFLGD +L L+ + LF+ Sbjct: 75 ELLRALGTTIS-PDLLVEALTHRSFSHEHPGTKNYERLEFLGDAVLELVSTETLFSAHPD 133 Query: 66 AKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ VS S VAR +L + +I + + + SI D+VE+LI Sbjct: 134 MTEGQLAKLRAKAVSEWALSAVARDKLHVGPYILLGHGEMEHGGAQKDSILCDIVEALIG 193 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +++ GI+ A V + + + D KT L AH P+Y++ SG Sbjct: 194 ATFVEHGIDEARAVVHRLIDDTLAEVLTEGPALDWKTSLTVLAHEMGLDEPQYRM-SVSG 252 Query: 183 PDHDPRFTVVVEI----SGLAPAQGMDCSKRAAEQVAAAEV 219 PD+ P F + + SKR A+ AA + Sbjct: 253 PDYAPVFHARAVLAHESGDELLGEADGSSKRKAQLAAADKA 293 >gi|161507714|ref|YP_001577671.1| ribonuclease III [Lactobacillus helveticus DPC 4571] gi|260101401|ref|ZP_05751638.1| ribonuclease III [Lactobacillus helveticus DSM 20075] gi|160348703|gb|ABX27377.1| Double stranded RNA-specific ribonuclease RNase [Lactobacillus helveticus DPC 4571] gi|260084741|gb|EEW68861.1| ribonuclease III [Lactobacillus helveticus DSM 20075] gi|323466305|gb|ADX69992.1| Double stranded RNA-specific ribonuclease RNase [Lactobacillus helveticus H10] Length = 228 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 66/214 (30%), Positives = 97/214 (45%), Gaps = 10/214 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLI 55 M + ++ L+ F N LLE+A THSS S+ + YE+LEFLGD +L L + Sbjct: 1 MVSTKFLKKLKDEYSIEFNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ H+ EGEL+ +++V E S+ A E + I + + K ++ Sbjct: 61 SDYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQNEIHLGNGEEKAGARKRKTLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPE 174 DV E+ AL+LD G+ F+ K RD KT+LQE V E Sbjct: 121 EDVFEAFNGALFLDQGMPAVQHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVNIE 180 Query: 175 YKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCS 207 Y V S P H F V ++I+ QG + Sbjct: 181 YSVISESQLPPH---FVVELKINDQVQTQGEGHN 211 >gi|121610179|ref|YP_997986.1| ribonuclease III [Verminephrobacter eiseniae EF01-2] gi|189043373|sp|A1WMW1|RNC_VEREI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|121554819|gb|ABM58968.1| RNAse III [Verminephrobacter eiseniae EF01-2] Length = 247 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 110/229 (48%), Gaps = 26/229 (11%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L++R+ + F++ LLE+A TH S S + ERLEFLGD +L L +S+LL+ + Sbjct: 7 ALQERLQHVFSDPGLLERATTHRSFSAEH---NERLEFLGDSVLNLAVSSLLYQRLSALP 63 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVS--------------------SDLRKDV 107 EGELS +LV E+ Q+A L LA +R+ D Sbjct: 64 EGELSRVRANLVRQESLYQLALRLPLAQALRLGESLSGNRQRRSRRRCADELQPDEAGSG 123 Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWA 165 SI AD +E+LI A+YLD G A V + ++ + RDAKT LQEW Sbjct: 124 GLQHPSILADALEALIGAVYLDAGYASAQALVQRLFQDVEISPRMQAAARDAKTALQEWL 183 Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 ++ P+Y+V R G H P F V I L + G S++A EQ Sbjct: 184 ASRKMKPPQYQVVARVGAAHCPTFEVACGIPALGLTERGSAGSRQAGEQ 232 >gi|260642610|ref|ZP_05416578.2| ribonuclease III [Bacteroides finegoldii DSM 17565] gi|260621352|gb|EEX44223.1| ribonuclease III [Bacteroides finegoldii DSM 17565] Length = 270 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 109/227 (48%), Gaps = 13/227 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 Y + +G+ N L E+AL H S S ++ + ERLEFLGD IL ++ ++ Sbjct: 18 ESYLCFYRILGFYPRNIQLYEQALLHKSTSLRSEKGRPLNNERLEFLGDAILDAIVGDIV 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + HF+ +EG L+ + +V ET +++A E+ L I+ S+ S + + + Sbjct: 78 YKHFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+ I A+YLD G E F+++ R + R + K++L EW+ + ++ Sbjct: 134 EAFIGAIYLDQGYERCKQFMEERIINRYIDLDILSRKEVNFKSKLIEWSQKN-KMEVSFE 192 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + D +P F V I G G SK+ ++Q AA +K+ Sbjct: 193 LIEQFLDRDSNPVFQTEVRIEGFPAGTGTGYSKKESQQNAAQMAIKK 239 >gi|242021933|ref|XP_002431397.1| ribonuclease III, putative [Pediculus humanus corporis] gi|212516673|gb|EEB18659.1| ribonuclease III, putative [Pediculus humanus corporis] Length = 1410 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 14/230 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E+ G F + LL +A T S ++ S +RLEFLGD +L L+ S L+ + Sbjct: 1150 NLTKFEEATGIEFKHIRLLARAFTDRSVGYTNLTLGSNQRLEFLGDSVLQLIASEYLYKY 1209 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ +T S V +L + + +AD++E+ Sbjct: 1210 FPEHHEGHLSLLRSSLVNNKTQSVVCDDLGMTQYAVY----ANPKVELKVKDRADLLEAF 1265 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174 + ALY+D G+++ F D + R + D K++LQ+ P Sbjct: 1266 LGALYVDNGLDICRVFCDVCFFPRLQIFIMNQDWNDPKSKLQQCCLTLRTMDNVEPDIPI 1325 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 YKV GP + +TV V A+ S + AE AA + ++ G Sbjct: 1326 YKVVECKGPTNTRVYTVAVYFRNKRLAKATGHSIQQAEMNAAQKAMEVSG 1375 Score = 95.5 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 34/100 (34%), Positives = 53/100 (53%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ERLEFLGD ++ + S LF+ F +EG L+ +LV + S +A++L+L F+ Sbjct: 1007 HNERLEFLGDAVVEFITSIHLFHIFRDLEEGGLATYRAALVQNQHLSVLAKKLNLDEFML 1066 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 + + A+ E+L+ AL+LDGGIE A Sbjct: 1067 YAHGSDLCHDLELKHAMANCFEALMGALFLDGGIESADKV 1106 >gi|187735104|ref|YP_001877216.1| Ribonuclease III [Akkermansia muciniphila ATCC BAA-835] gi|187425156|gb|ACD04435.1| Ribonuclease III [Akkermansia muciniphila ATCC BAA-835] Length = 231 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 66/212 (31%), Positives = 93/212 (43%), Gaps = 6/212 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFN 61 + ++ LE ++GY F N LL +ALTH S + +YERLEFLGD IL L ++ L++ Sbjct: 1 MNHTALEDKLGYRFNNPDLLVQALTHPSTDSKPETRRAYERLEFLGDAILQLAVTQYLYH 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H + EGEL+ VS + L L I + + SI A+ ES Sbjct: 61 HMPQSPEGELTQLRARTVSRANLGKYGFILGLDKHIALGKGEERAGGRGKNSIIANTFES 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 + A+ LD E A + + + + + K ELQ TP Y+ T Sbjct: 121 VFGAMSLDSDYETAKAVALRVLHEALDSAASHPKEINPKGELQAILQDILPETPSYE-TE 179 Query: 180 RSGP-DHDPRFTVVVEISGLAPAQGMDCSKRA 210 GP D + RF V G A G SKR Sbjct: 180 EKGPRDAENRFESRVFWHGHAIGAGSGASKRK 211 >gi|283782836|ref|YP_003373590.1| ribonuclease III [Gardnerella vaginalis 409-05] gi|283442034|gb|ADB14500.1| ribonuclease III [Gardnerella vaginalis 409-05] Length = 242 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 101/221 (45%), Gaps = 11/221 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65 L +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF+ Sbjct: 16 ELLNALGTTIS-PDLLVEALTHRSFSHEHPGTRNYERLEFLGDAVLELVSTETLFSAHPD 74 Query: 66 AKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ VS S VARE L + ++I + + + SI D+VE+LI Sbjct: 75 MTEGQLAKMRAKAVSEWALSAVAREKLHVGAYILLGRGEMEQGGNNKDSILCDIVEALIG 134 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +++ GI+ A V + + + D KT L AH PEY++ SG Sbjct: 135 ATFVEHGIDEARRVVHRLIDDTLAEVLTEGPALDWKTSLTVKAHDMGLEDPEYRM-AVSG 193 Query: 183 PDHDPRFTVVVEI----SGLAPAQGMDCSKRAAEQVAAAEV 219 P++ P F + G SKR A+ AA Sbjct: 194 PEYAPVFEARAVLAHKDGDEVLGVGSGSSKRKAQLAAAEIA 234 >gi|298253314|ref|ZP_06977106.1| dsRNA-specific ribonuclease [Gardnerella vaginalis 5-1] gi|297532709|gb|EFH71595.1| dsRNA-specific ribonuclease [Gardnerella vaginalis 5-1] Length = 276 Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 101/221 (45%), Gaps = 11/221 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65 L +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF+ Sbjct: 50 ELLNALGTTIS-PDLLVEALTHRSFSHEHPGTRNYERLEFLGDAVLELVSTETLFSAHPD 108 Query: 66 AKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ VS S VARE L + ++I + + + SI D+VE+LI Sbjct: 109 MTEGQLAKMRAKAVSEWALSAVAREKLHVGAYILLGRGEMEQGGNNKDSILCDIVEALIG 168 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +++ GI+ A V + + + D KT L AH PEY++ SG Sbjct: 169 ATFVEHGIDEARRVVHRLIDDTLAEVLTEGPALDWKTSLTVKAHDMGLEDPEYRM-AVSG 227 Query: 183 PDHDPRFTVVVEI----SGLAPAQGMDCSKRAAEQVAAAEV 219 P++ P F + G SKR A+ AA Sbjct: 228 PEYAPVFEARAVLARKDGDEVLGVGSGSSKRKAQLAAAEIA 268 >gi|225351172|ref|ZP_03742195.1| hypothetical protein BIFPSEUDO_02762 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158628|gb|EEG71870.1| hypothetical protein BIFPSEUDO_02762 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 275 Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 107/225 (47%), Gaps = 12/225 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M+A + L + +G LL +ALTH S SH ++YERLEFLGD +L L+ + Sbjct: 16 MTA---NALLEALGTTLE-PDLLVEALTHRSFSHENPGAKNYERLEFLGDAVLELVSTET 71 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ EG+L+ VS E+ S++ARE L+ +I + + +SI D Sbjct: 72 LYKAHPDMNEGQLAKMRAKAVSEESLSKIAREKLNAGPYILLGHGESDQGGADKSSILCD 131 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEY 175 +VESLI A ++ GI+ A V + + + D KT L AH P Y Sbjct: 132 IVESLIGATFIQHGIDEARRVVHHLVDETLAEVATEGPALDWKTSLTVKAHGMGFGEPRY 191 Query: 176 KVTFRSGPDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAE 218 ++ SGP++ FT V + + G SKR A+ AA E Sbjct: 192 QM-SVSGPEYAQVFTANVMLGESDEIISTGTGTSKRKAQLAAAEE 235 >gi|298492780|ref|YP_003722957.1| ribonuclease III ['Nostoc azollae' 0708] gi|298234698|gb|ADI65834.1| ribonuclease III ['Nostoc azollae' 0708] Length = 227 Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats. Identities = 55/198 (27%), Positives = 85/198 (42%), Gaps = 8/198 (4%) Query: 16 AFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F LL +ALTH S + E ERLEFLGD IL + L+ + E EL+ Sbjct: 6 TFNREKLLCQALTHRSYVNENPGEGEHNERLEFLGDAILNFISGQYLYRRYPQKGEDELT 65 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 R ++LV + ++ A E+ L +R+ +D ++ + E++I A YLD Sbjct: 66 RRRSALVEEKQLAKFAIEVGLDFRMRLGKGAIRDGGFQNPNLLSSTFEAVIGAYYLDNNC 125 Query: 133 EV--AGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDP 187 EV T ++ + + + D+K QEW + G P+Y GP H P Sbjct: 126 EVEPIRTIIEPLFDSVSEDIIEPRSNVDSKNRFQEWVQKEIGANPPKYVTEQIGGPSHAP 185 Query: 188 RFTVVVEISGLAPAQGMD 205 F V + G + Sbjct: 186 EFIARVLVDGKEYGEAKG 203 >gi|297242888|ref|ZP_06926826.1| dsRNA-specific ribonuclease [Gardnerella vaginalis AMD] gi|296889099|gb|EFH27833.1| dsRNA-specific ribonuclease [Gardnerella vaginalis AMD] Length = 273 Score = 197 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 101/221 (45%), Gaps = 11/221 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65 L +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF+ Sbjct: 47 ELLNALGTTIS-PDLLVEALTHRSFSHEHPGTRNYERLEFLGDAVLELVSTETLFSAHPD 105 Query: 66 AKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ VS S VARE L + ++I + + + SI D+VE+LI Sbjct: 106 MTEGQLAKMRAKAVSEWALSAVAREKLHVGAYILLGRGEMEQGGNNKDSILCDIVEALIG 165 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +++ GI+ A V + + + D KT L AH PEY++ SG Sbjct: 166 ATFVEHGIDEARRVVHRLIDDTLAEVLTEGPALDWKTSLTVKAHDMGLEDPEYRM-AVSG 224 Query: 183 PDHDPRFTVVVEI----SGLAPAQGMDCSKRAAEQVAAAEV 219 P++ P F + G SKR A+ AA Sbjct: 225 PEYAPVFEARAVLAHKDGDEVLGVGSGSSKRKAQLAAAEIA 265 >gi|212716732|ref|ZP_03324860.1| hypothetical protein BIFCAT_01669 [Bifidobacterium catenulatum DSM 16992] gi|212660436|gb|EEB21011.1| hypothetical protein BIFCAT_01669 [Bifidobacterium catenulatum DSM 16992] Length = 278 Score = 197 bits (503), Expect = 8e-49, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 107/225 (47%), Gaps = 12/225 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M+A + L + +G LL +ALTH S SH ++YERLEFLGD +L L+ + Sbjct: 16 MTA---NALLEALGTTLE-PDLLVEALTHRSFSHENPGAKNYERLEFLGDAVLELVSTET 71 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ EG+L+ VS E+ S++ARE L+ +I + + +SI D Sbjct: 72 LYKAHPDMNEGQLAKMRAKAVSEESLSKIAREKLNAGPYILLGHGESDQGGADKSSILCD 131 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEY 175 +VESLI A ++ GI+ A V + + + D KT L AH P Y Sbjct: 132 IVESLIGATFIQHGIDEARRVVHHLVDETLAEVATEGPALDWKTSLTVKAHGMGFGEPRY 191 Query: 176 KVTFRSGPDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAE 218 ++ SGP++ FT V + + G SKR A+ AA E Sbjct: 192 QM-SVSGPEYAQVFTANVMLGESDEIISTGTGTSKRKAQLAAAEE 235 >gi|40455575|gb|AAR85911.1| ribonuclease III-like protein [Rattus norvegicus] Length = 288 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 20 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 79 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 80 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 138 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 139 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 198 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 199 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 245 >gi|29748104|gb|AAH50057.1| Rnasen protein [Mus musculus] Length = 705 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 111/227 (48%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 437 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 496 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F E L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 497 FPDHHERHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 555 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 556 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 615 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 616 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 662 Score = 95.9 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 294 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 353 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 354 LYAHGPDLCSESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 400 >gi|256379958|ref|YP_003103618.1| ribonuclease III [Actinosynnema mirum DSM 43827] gi|255924261|gb|ACU39772.1| ribonuclease III [Actinosynnema mirum DSM 43827] Length = 267 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 95/212 (44%), Gaps = 9/212 (4%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 ++ + L + +G + LL ALTH S ++ ERLEFLGD +LGL+++ L+ Sbjct: 10 SVDRTPLLEALGV-PLDAELLTLALTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLY 68 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVAR---ELDLASFIRVSSDLRKDVCSFMTSIQAD 117 EG+L+ S+V+ + VAR L + + SI AD Sbjct: 69 RAHPDRPEGQLAKLRASVVNMHALAGVARGLGADGLGGHLLLGRGEELTGGRDKASILAD 128 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEY 175 +E++I A+YL GI+ A V + ++ D KT LQE + PEY Sbjct: 129 GLEAVIGAVYLQFGIDTARQLVHHLFDPLLAEAPLRGAGLDWKTSLQELTASSGLGVPEY 188 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +V + GPDH FT V + G G + Sbjct: 189 RVDDQ-GPDHRKEFTATVYVGGKPHGSGDGRT 219 >gi|257055001|ref|YP_003132833.1| RNAse III [Saccharomonospora viridis DSM 43017] gi|256584873|gb|ACU96006.1| RNAse III [Saccharomonospora viridis DSM 43017] Length = 250 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 103/208 (49%), Gaps = 9/208 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 ++L + +G + LL ALTH S ++ ERLEFLGD +LGL+++ L+ Sbjct: 14 TSLLEALGVEI-DSELLTLALTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLYRQHP 72 Query: 65 SAKEGELSVRFNSLVSAETCSQVARE---LDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG+L+ S+V+ + VAR L + + + SI AD +E+ Sbjct: 73 DLPEGQLAKLRASVVNMHALAGVARSLGEGGLGAHLLLGKGEELTGGRDKASILADGLEA 132 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179 +I A+YL+ GIE A + V + + + ++ + D KT LQE + PEYKV Sbjct: 133 VIGAVYLEHGIETARSLVHRLFGRLLAEAPRRGAGLDWKTSLQELTASAGLGVPEYKVVD 192 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +GPDH F+ VV ++G +G + Sbjct: 193 -TGPDHRKEFSAVVLVNGRDLGRGDGTT 219 >gi|209525933|ref|ZP_03274467.1| Ribonuclease III [Arthrospira maxima CS-328] gi|209493610|gb|EDZ93931.1| Ribonuclease III [Arthrospira maxima CS-328] Length = 395 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 66/213 (30%), Positives = 101/213 (47%), Gaps = 21/213 (9%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 S L K+I F N LL ALTHSS + + + E LEFLGD +L + L+ Sbjct: 165 ELSKLLKKI--PFQNVDLLNHALTHSSYLYEHPKEVKRDNELLEFLGDSVLNFISGEYLY 222 Query: 61 NHFDS-AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 N + S EG+L+ ++LV + ++ A +L L +IR+ + S+ ++ Sbjct: 223 NKYKSVRNEGDLTKLRSALVENKQLAKFAEKLALQQYIRLGKG-----AALNPSLLSNTF 277 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--------SGKFRRDAKTELQEWAHAKFGV 171 E++I A +LD G++ F+ + + SGK D+K LQEW G Sbjct: 278 EAMIGAYFLDSGMKKVQEFLQPLFDSVIAEITSLSQGNSGKVAADSKNRLQEWVQKNIGP 337 Query: 172 -TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 TPEY+ G DH +FTV V + G +G Sbjct: 338 ITPEYETIKEEGADHKKQFTVQVMVQGKVYGEG 370 >gi|224536731|ref|ZP_03677270.1| hypothetical protein BACCELL_01607 [Bacteroides cellulosilyticus DSM 14838] gi|224521647|gb|EEF90752.1| hypothetical protein BACCELL_01607 [Bacteroides cellulosilyticus DSM 14838] Length = 296 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 115/229 (50%), Gaps = 13/229 (5%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 Y K +G+ N L ++AL H S S ++ + ERLEFLGD IL ++ Sbjct: 16 DKESYFCFYKILGFYPRNIQLYQQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGD 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +++ HF+ +EG L+ + +V ET +++A E+ L ++ S+ S + + + Sbjct: 76 IVYKHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGN 131 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPE 174 E+ I A+YLD G E F+++ + + K R + K++L EW+ K V Sbjct: 132 AFEAFIGAIYLDQGYERCKRFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQ-KSKVEVS 190 Query: 175 YKVTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +++ + D++P F + I G++ +G SK+ ++Q AA LK+ Sbjct: 191 FELIEQFLDEDYNPMFHTEIRIEGISAGKGTGYSKKESQQNAAQAALKK 239 >gi|298387131|ref|ZP_06996685.1| ribonuclease 3 [Bacteroides sp. 1_1_14] gi|298260281|gb|EFI03151.1| ribonuclease 3 [Bacteroides sp. 1_1_14] Length = 324 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 111/228 (48%), Gaps = 15/228 (6%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 Y + +G+ N + E+AL H S S ++ + ERLEFLGD IL ++ ++ Sbjct: 31 ESYLCFYRILGFYPHNIQIYEQALLHKSSSVRSEKGRPLNNERLEFLGDAILDAIVGDIV 90 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F+ +EG L+ + +V ET +++A E+ L I+ S+ S + + + Sbjct: 91 YKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 146 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+ I A+YLD G E F+++ R + K R + K++L EW+ + ++ Sbjct: 147 EAFIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKN-KMEVSFE 205 Query: 177 VTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + DHD P F V I GL G SK+ ++Q AA +K+ Sbjct: 206 LIEQF-LDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252 >gi|29348766|ref|NP_812269.1| ribonuclease III [Bacteroides thetaiotaomicron VPI-5482] gi|253568891|ref|ZP_04846301.1| ribonuclease III [Bacteroides sp. 1_1_6] gi|29340672|gb|AAO78463.1| ribonuclease III [Bacteroides thetaiotaomicron VPI-5482] gi|251840910|gb|EES68991.1| ribonuclease III [Bacteroides sp. 1_1_6] Length = 324 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 15/228 (6%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 Y + +G+ N + E+AL H S + ++ + ERLEFLGD IL ++ ++ Sbjct: 31 ESYLCFYRILGFYPHNIQIYEQALLHKSSAVRSEKGRPLNNERLEFLGDAILDAIVGDIV 90 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F+ +EG L+ + +V ET +++A E+ L I+ S+ S + + + Sbjct: 91 YKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 146 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+ I A+YLD G E F+++ R + K R + K++L EW+ + ++ Sbjct: 147 EAFIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKN-KMEVSFE 205 Query: 177 VTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + DHD P F V I GL G SK+ ++Q AA +K+ Sbjct: 206 LIEQF-LDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252 >gi|212695676|ref|ZP_03303804.1| hypothetical protein ANHYDRO_00193 [Anaerococcus hydrogenalis DSM 7454] gi|212677349|gb|EEB36956.1| hypothetical protein ANHYDRO_00193 [Anaerococcus hydrogenalis DSM 7454] Length = 228 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 60/198 (30%), Positives = 103/198 (52%), Gaps = 7/198 (3%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+F N++L++ ALTHSS + ++ S ERLEFLGD IL L++S L+ + S E Sbjct: 18 IGYSFKNKNLIDVALTHSSYINESKDKNRSSNERLEFLGDSILDLVVSEELYKNHKSYPE 77 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ + +V + S+ + + +L+S++ S++AD E+ AA+YL Sbjct: 78 GKLTKIRSRIVCTSSFSKASEKFNLSSYLLFGKGEISHNGREKKSVKADTFEAFCAAIYL 137 Query: 129 DGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D G F+ + + + L++ D KT+LQE+ + +YK+ GP+H Sbjct: 138 DAGYVFLKNFLMENYYQTVKELLENDLLFIDYKTKLQEYFNKTNRTILKYKLAKEEGPEH 197 Query: 186 DPRFTVVVEISGLAPAQG 203 + F + V + G Sbjct: 198 NKTFYMDVYAKNKKLSTG 215 >gi|306823678|ref|ZP_07457053.1| ribonuclease III [Bifidobacterium dentium ATCC 27679] gi|309802879|ref|ZP_07696980.1| ribonuclease III [Bifidobacterium dentium JCVIHMP022] gi|304553385|gb|EFM41297.1| ribonuclease III [Bifidobacterium dentium ATCC 27679] gi|308220346|gb|EFO76657.1| ribonuclease III [Bifidobacterium dentium JCVIHMP022] Length = 294 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 101/207 (48%), Gaps = 9/207 (4%) Query: 20 RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 LL +ALTH S SH + ++YERLEFLGD +L L+ + L+ EG+L+ Sbjct: 81 PELLVEALTHRSFSHEHPGAKNYERLEFLGDAVLELVSTETLYAAHPDMTEGQLAKMRAK 140 Query: 78 LVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 VS E+ S +ARE L + +I + + + + +SI D+VESLI A ++ GI+ A Sbjct: 141 AVSEESLSHIAREKLHVGPYILLGNGEAEQHGAEKSSILCDIVESLIGATFIQHGIDEAR 200 Query: 137 TFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 V + + D KT L AH P Y++ SGP++ FT Sbjct: 201 KVVHHLVDDTLAEVATEGPALDWKTSLTVKAHDMGLGEPYYRM-SVSGPEYAQVFTAKAM 259 Query: 195 ISG--LAPAQGMDCSKRAAEQVAAAEV 219 + G G SKR A Q+AAAE Sbjct: 260 LEGSDEVIGIGKGSSKRKA-QLAAAEA 285 >gi|294791394|ref|ZP_06756551.1| ribonuclease III [Scardovia inopinata F0304] gi|294457865|gb|EFG26219.1| ribonuclease III [Scardovia inopinata F0304] Length = 271 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 65/209 (31%), Positives = 108/209 (51%), Gaps = 6/209 (2%) Query: 20 RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 L +ALTH S ++ + +YERLEFLGD +L L+I+ L+ + + EG++S + Sbjct: 36 PDLFVEALTHRSFTNEHPLAHNYERLEFLGDAVLELVITETLYKNHPTYSEGQMSRIRSK 95 Query: 78 LVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +VS E+ S++AR +L ++ FI + ++D ++ SI DVVESLI A++++ GI+ A Sbjct: 96 VVSEESLSEIARDKLKISQFILLGIGEQRDKGAYKPSILCDVVESLIGAVFIEQGIDKAR 155 Query: 137 TFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + D KT + AH Y++ SGP++ FT + Sbjct: 156 QVIHHLLDDNLAFYTTEGPALDWKTAIVIKAHKMNLGEVSYRM-EMSGPENHLEFTAYLL 214 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 I+ A G SKR A+ AA + + Sbjct: 215 INDQDVAWGRGSSKRKAQLDAAQKAWHQL 243 >gi|213389868|gb|ACJ45995.1| putative ribonuclease III [Palm lethal yellowing phytoplasma] Length = 207 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 91/209 (43%), Gaps = 7/209 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLF 60 + L +R+ N SL ALTHSS ++ ERLEFLGD ++ L++ L+ Sbjct: 1 MPLQKLFQRLKIEPKNISLYINALTHSSYANESPFQNNDNERLEFLGDAVINFLMANYLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG ++ + V ++ A E+DL +I + +K SI AD E Sbjct: 61 RK-NKYDEGSMTKKRAQAVCIDSLLIYANEIDLKEYILLGKGEQKRYI-HNYSIIADAFE 118 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +L A+YLD G E K K D KT+LQE A+ T YK+ Sbjct: 119 ALFGAIYLDLGYEQVKKTFYYVVLPCLNKIIKII-DYKTQLQEIVQAE-KQTIHYKIIEE 176 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 +G H+ F V ++ G +K+ Sbjct: 177 TGLAHEKEFIAEVYLNNKLLGSGTGKTKK 205 >gi|312375831|gb|EFR23111.1| hypothetical protein AND_13526 [Anopheles darlingi] Length = 1254 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 14/227 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + E IG F++ LL +A T S ++ S +RLEFLGD +L L+ S L+ HF Sbjct: 778 LTRFEDSIGVKFSHIRLLARAFTDRSMGFTNLTLGSNQRLEFLGDTVLQLICSEYLYRHF 837 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS+ +SLV+ T + V +L + + S+ T +AD++E+ + Sbjct: 838 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTQYAVYSNP----KAELKTKDRADLLEAFL 893 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPEY 175 ALY+D G+ F R + D K++LQ+ P Y Sbjct: 894 GALYVDKGLVYCEKFCQVCLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPLY 953 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 KV +GP + ++V V G A S + AE AA + L++ Sbjct: 954 KVIECTGPTNTRVYSVAVYFRGKRLACANGHSIQQAEMNAARQALEK 1000 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 51/212 (24%), Positives = 76/212 (35%), Gaps = 57/212 (26%) Query: 9 LEKRIGYAFANRSLLEKALTHSS------------------------------------- 31 LEK I Y F NR L+ ALTH S Sbjct: 548 LEKHIDYRFTNRYTLQLALTHPSYKENFGTNPDHARNSLTNCGIRQPEYGDRKIHYMNTR 607 Query: 32 -------------ISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 ++ ERLEFLGD ++ + S LF+ F +EG L+ Sbjct: 608 KRGINTLISIMSRFGKEHETDSNITHNERLEFLGDAVVEFITSIHLFHMFPDLEEGGLAT 667 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 ++V + + +A++L L F+ + + A+ E+L+ AL LDGGI Sbjct: 668 YRAAIVQNQHLAVLAKKLHLEEFMLYAHGSDLCHELELRHALANCFEALMGALLLDGGIA 727 Query: 134 VA-GTFVDKYWKQRALKSGKFRRDAKT-ELQE 163 VA F + K + + LQE Sbjct: 728 VADRVFAYALFGPDEPKLHEIWTNYPRHPLQE 759 >gi|90101612|sp|Q8A2E8|RNC_BACTN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 311 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 15/228 (6%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 Y + +G+ N + E+AL H S + ++ + ERLEFLGD IL ++ ++ Sbjct: 18 ESYLCFYRILGFYPHNIQIYEQALLHKSSAVRSEKGRPLNNERLEFLGDAILDAIVGDIV 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F+ +EG L+ + +V ET +++A E+ L I+ S+ S + + + Sbjct: 78 YKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+ I A+YLD G E F+++ R + K R + K++L EW+ + ++ Sbjct: 134 EAFIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKN-KMEVSFE 192 Query: 177 VTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + DHD P F V I GL G SK+ ++Q AA +K+ Sbjct: 193 LIEQF-LDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 239 >gi|283455260|ref|YP_003359824.1| ribonuclease III [Bifidobacterium dentium Bd1] gi|283101894|gb|ADB09000.1| rncS Ribonuclease III [Bifidobacterium dentium Bd1] Length = 294 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 101/207 (48%), Gaps = 9/207 (4%) Query: 20 RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 LL +ALTH S SH + ++YERLEFLGD +L L+ + L+ EG+L+ Sbjct: 81 PELLVEALTHRSFSHEHPGAKNYERLEFLGDAVLELVSTETLYAAHPDMTEGQLAKMRAK 140 Query: 78 LVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 VS E+ S +ARE L + +I + + + + +SI D+VESLI A ++ GI+ A Sbjct: 141 AVSEESLSHIAREKLHVGPYILLGNGEAEQHGAEKSSILCDIVESLIGATFIQHGIDEAR 200 Query: 137 TFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 V + + D KT L AH P Y++ SGP++ FT Sbjct: 201 KVVHHLVDDTLAEVATEGPALDWKTSLTVKAHDMGLGEPYYRM-SVSGPEYAQVFTAKAM 259 Query: 195 ISG--LAPAQGMDCSKRAAEQVAAAEV 219 + G G SKR A Q+AAAE Sbjct: 260 LEGSDEVIGIGKGSSKRKA-QLAAAEA 285 >gi|186681790|ref|YP_001864986.1| ribonuclease III [Nostoc punctiforme PCC 73102] gi|186464242|gb|ACC80043.1| ribonuclease III [Nostoc punctiforme PCC 73102] Length = 228 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 54/200 (27%), Positives = 82/200 (41%), Gaps = 9/200 (4%) Query: 17 FANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F N LL ALTH S H E ERLEFLGD +L L L+ E EL+ Sbjct: 7 FHNEKLLRHALTHRSYVHENPGEGEHNERLEFLGDALLNFLSGEYLYKCHPEMGEDELTR 66 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL--DGG 131 R ++LV + ++ A E+ L +R+ D ++ + E+++ A YL D Sbjct: 67 RRSALVDEKQLAKFAEEVGLDFRMRLGKGAILDGGYQNPNLLSSTFEAVLGAYYLDNDSN 126 Query: 132 IEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDP 187 IE ++ + + + + D+K QEW P+Y GP H P Sbjct: 127 IEAVRAIIEPLFDSVDPKHIVVSRSNVDSKNRFQEWVQRNVTPNPPKYFTEQIGGPSHAP 186 Query: 188 RFTVVVEISGLAPAQGMDCS 207 F V + +G + Sbjct: 187 EFIAKVLVDEKIYGEGKGRN 206 >gi|167645701|ref|YP_001683364.1| ribonuclease III [Caulobacter sp. K31] gi|189043302|sp|B0T3I0|RNC_CAUSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|167348131|gb|ABZ70866.1| Ribonuclease III [Caulobacter sp. K31] Length = 232 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 91/207 (43%), Positives = 122/207 (58%), Gaps = 3/207 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63 + LE+RIG+ FA+R LLE ALTH+S+ ++ E LEF+GDR+LGLL + L F Sbjct: 8 VADLERRIGHTFADRKLLELALTHASVGDGAKKAGDNEVLEFIGDRVLGLLAAEALAERF 67 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 AKEGEL+ R N+LVS ETC++VAR ++ +R+S+ K SI A E+L+ Sbjct: 68 PKAKEGELAPRLNALVSRETCARVARGAEMGPALRLSASSSKIGGRETDSILAGAAEALM 127 Query: 124 AALYLDGGIEVAGTFVDKYWK-QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AALY DGG+E+A W + L + RD KT LQEWA ++ P Y V R G Sbjct: 128 AALYRDGGLELARRVFLDLWAGEFDLANQGKPRDPKTALQEWAQSQGKPLPTYAVKDRKG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDH P FTV V + GL P S++ Sbjct: 188 PDHAPMFTVQVTVVGLDPVFAEGRSRQ 214 >gi|24637290|gb|AAN63637.1|AF440766_1 ribonuclease III [Mus musculus] Length = 541 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 110/227 (48%), Gaps = 10/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 273 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 332 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD+ ES Sbjct: 333 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLWESF 391 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 392 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 451 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H + V V G G S + AE AA + L++ Sbjct: 452 KTLQTVGPSHARTYPVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 498 Score = 95.9 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 130 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAMVQNQHLAMLAKKLELDRFM 189 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 190 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 236 >gi|218131792|ref|ZP_03460596.1| hypothetical protein BACEGG_03413 [Bacteroides eggerthii DSM 20697] gi|217986095|gb|EEC52434.1| hypothetical protein BACEGG_03413 [Bacteroides eggerthii DSM 20697] Length = 301 Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 112/227 (49%), Gaps = 13/227 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 Y K +G+ N ++AL H S S ++ + ERLEFLGD IL ++ ++ Sbjct: 30 ESYFCFYKILGFFPRNIRFYQQALLHKSTSVRSEKGRPLNNERLEFLGDAILDAIVGDIV 89 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + HF+ +EG L+ + +V ET +++A E+ L ++ S+ S + + + Sbjct: 90 YKHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAF 145 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+LI A+YLD G E F+++ + + K R + K++L EW+ + ++ Sbjct: 146 EALIGAIYLDQGYERCKQFMEEKILKNYIDLDKMSRKEVNFKSKLIEWSQKN-KMEVSFE 204 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + +S D++P F V I L G SK+ ++Q AA LK+ Sbjct: 205 LIEQSLDRDYNPMFHTEVLIENLPAGTGTGYSKKESQQNAAQMALKK 251 >gi|297571639|ref|YP_003697413.1| ribonuclease III [Arcanobacterium haemolyticum DSM 20595] gi|296931986|gb|ADH92794.1| ribonuclease III [Arcanobacterium haemolyticum DSM 20595] Length = 235 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 108/227 (47%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLL 59 M S L G + LL ALTH S + ++ + ERLEF+GD ILG +++ + Sbjct: 1 MHEQDRSPLLDAWGVEIPD-ELLTLALTHRSWAFEHECGNNERLEFMGDSILGAVVAEQI 59 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F+ + EGELS ++ VS + +AR L+L ++IR+ + SI AD V Sbjct: 60 FHDYPEKSEGELSKIKSAAVSERALAGIARGLNLGAYIRLGKGEERTGGRDKDSILADTV 119 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKF-GVTPEYK 176 E+LIAA Y GG+ V + V + + +++ + D +T ++E A Y Sbjct: 120 EALIAATYEAGGLRVVISTVRHHLHAKIIEATQMGPALDWRTGMEEKARELGIAGELSYT 179 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GPDH +T V I +G S++A++ A + R Sbjct: 180 IVGE-GPDHAKVYTARVFIGETEWGRGDATSRKASKLAACKDAYYRL 225 >gi|154486628|ref|ZP_02028035.1| hypothetical protein BIFADO_00445 [Bifidobacterium adolescentis L2-32] gi|154084491|gb|EDN83536.1| hypothetical protein BIFADO_00445 [Bifidobacterium adolescentis L2-32] Length = 298 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 111/226 (49%), Gaps = 13/226 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M+A + L + +G LL +ALTH S SH ++ ++YERLEFLGD +L L+ + Sbjct: 37 MTA---NVLLEALGTTIE-PDLLVEALTHRSFSHEHEGAKNYERLEFLGDAVLELVSTET 92 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ EG+L+ VS E+ S++ARE L + +I + + + +SI D Sbjct: 93 LYKVHPDMNEGQLAKMRAKAVSEESLSKIAREKLHVGPYILLGHGEAEQGGADKSSILCD 152 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEY 175 +VESLI A ++ GI+ A V + + D KT L AH P Y Sbjct: 153 IVESLIGATFIQHGIDEARRVVHHLVDDTLAEVATEGPALDWKTSLTVKAHEMGLPDPHY 212 Query: 176 KVTFRSGPDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEV 219 + T +GP++ FT + G G SKR A Q+AAAE+ Sbjct: 213 Q-TSVAGPEYALEFTARAILGDGGEVIGVGTGSSKRKA-QLAAAEM 256 >gi|167752469|ref|ZP_02424596.1| hypothetical protein ALIPUT_00720 [Alistipes putredinis DSM 17216] gi|167659538|gb|EDS03668.1| hypothetical protein ALIPUT_00720 [Alistipes putredinis DSM 17216] Length = 264 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 61/218 (27%), Positives = 94/218 (43%), Gaps = 11/218 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 Y +++ G+ N L + AL H S + Q + ERLEFLGD ++ + S L+ Sbjct: 20 YRIIDELFGFVPHNIELYKLALIHKSASLVLADGRQINNERLEFLGDAVIEAVTSDYLYI 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +EG L+ + +VS ++ + +AR + L ++ + + I D E+ Sbjct: 80 EFPDRQEGFLTQLRSKIVSRQSLNTIARTIGLDRYVIANP----TGSTNQKHIYGDAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 +I A+YLD G E A + R L D K+ L EW V Sbjct: 136 MIGAIYLDQGYEFANRLLINNIYYRYLNLDNLTDEETDFKSRLIEWCQKTHHTIAFETVH 195 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 R+ + P F V I G+ G SK+ AEQ AA Sbjct: 196 GRNYSSNHPIFDATVVIDGIRVGHGQGESKKEAEQCAA 233 >gi|270294929|ref|ZP_06201130.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317477924|ref|ZP_07937108.1| ribonuclease III [Bacteroides sp. 4_1_36] gi|270274176|gb|EFA20037.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316905940|gb|EFV27710.1| ribonuclease III [Bacteroides sp. 4_1_36] Length = 309 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 114/227 (50%), Gaps = 13/227 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 Y + +G+ + + ++AL H SIS ++ + ERLEFLGD IL ++ ++ Sbjct: 35 ESYFCFYRILGFFPRDIKVYQQALLHKSISMRSEKGRPINNERLEFLGDAILDAIVGDIV 94 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + HF+ +EG L+ + +V ET +++A E+ L ++ S+ S + + + Sbjct: 95 YRHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAF 150 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+ I A+YLD G + F+++ + + K R + K++L EW+ + ++ Sbjct: 151 EAFIGAIYLDQGYDRCKQFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQKN-KMEVSFE 209 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + +++P F V I G++ G SK+ ++Q AA LK+ Sbjct: 210 LIEQFLDEEYNPMFHTEVRIEGISAGTGTGYSKKESQQNAAQMALKK 256 >gi|195402669|ref|XP_002059927.1| GJ15113 [Drosophila virilis] gi|194140793|gb|EDW57264.1| GJ15113 [Drosophila virilis] Length = 1306 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ H Sbjct: 955 DLTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1014 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + + T +AD++E+ Sbjct: 1015 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVY----ANPKADLKTKDRADLLEAF 1070 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174 + ALY+D G+ F R + D K++LQ+ P Sbjct: 1071 LGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1130 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV SGP + + V V A S + AE AA + L+ Sbjct: 1131 YKVVEASGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALEN 1178 Score = 78.6 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 3/136 (2%) Query: 29 HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88 H ++S+ ERLEFLGD ++ L S LF F +EG L+ ++V + + +A Sbjct: 804 HETVSNIT--HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLA 861 Query: 89 RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 ++L L F+ + + A+ E+L+ AL LDGGI+VA ++ Sbjct: 862 KKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDE 921 Query: 149 KSGKFRRD-AKTELQE 163 K K ++ + LQE Sbjct: 922 KLLKIWKNLPEHPLQE 937 >gi|294054381|ref|YP_003548039.1| ribonuclease III [Coraliomargarita akajimensis DSM 45221] gi|293613714|gb|ADE53869.1| ribonuclease III [Coraliomargarita akajimensis DSM 45221] Length = 228 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 69/205 (33%), Positives = 99/205 (48%), Gaps = 5/205 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +TL +I ++F + SLLE AL H S+ E +RLEFLGD +L L+I+ L+ HF Sbjct: 4 NLTTLADKIDHSFTDHSLLEMALKHPSL-DIGVEDNQRLEFLGDAVLDLVIAEYLYQHFP 62 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S +EG L R SLVS + + A EL L + + VS R + D +E+LI Sbjct: 63 SEEEGRLDRRRASLVSGKALAPKALELGLNTVLVVSEAQRTHHPEPSKGMLEDALEALIG 122 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRD--AKTELQEWAHA-KFGVTPEYKVTFR 180 A+YLD G++ A + + + D AK LQEW + G P+Y + Sbjct: 123 AIYLDAGLDAARRSIRHIFAPELAAMAEGSPHDSRAKNRLQEWTQKHRQGAQPKYALIGS 182 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMD 205 GPDH + V V + G Sbjct: 183 EGPDHARVYHVSVSLDDEELGTGSG 207 >gi|329964465|ref|ZP_08301519.1| ribonuclease III [Bacteroides fluxus YIT 12057] gi|328524865|gb|EGF51917.1| ribonuclease III [Bacteroides fluxus YIT 12057] Length = 294 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 113/226 (50%), Gaps = 13/226 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 Y K +G+ N + ++AL H S S ++ + ERLEFLGD IL ++ +++ Sbjct: 19 SYLCFYKILGFFPHNIQIYQQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGDIVY 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 HFD +EG L+ + +V ET +++A E+ L ++ S+ S + + + E Sbjct: 79 KHFDGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAFE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKV 177 + I A+YLD G + F+++ + + K R + K++L EW+ + +++ Sbjct: 135 AFIGAIYLDQGYDRCKQFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQKN-KMEVSFEL 193 Query: 178 TFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + D++P F V I G++ G SK+ ++Q AA LK+ Sbjct: 194 IEQLLDEDYNPMFHTEVRIEGISAGTGTGYSKKESQQNAARMTLKK 239 >gi|157119283|ref|XP_001653338.1| ribonuclease iii [Aedes aegypti] gi|108875392|gb|EAT39617.1| ribonuclease iii [Aedes aegypti] Length = 1374 Score = 194 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 103/227 (45%), Gaps = 14/227 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + E IG F + LL +A T S ++ S +RLEFLGD +L L+ S L+ HF Sbjct: 945 LTKFEDAIGVNFNHIRLLARAFTDRSIGFTNLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1004 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS+ +SLV+ T + V +L + ++ S+ T +AD++E+ + Sbjct: 1005 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTTYAVYSNP----KADLKTKDRADLLEAFL 1060 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPEY 175 ALY+D G+E TF R + D K++LQ+ P Y Sbjct: 1061 GALYVDKGLEHCETFCHVCLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPIY 1120 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 KV +GP + +TV V G A S + AE AA + L+ Sbjct: 1121 KVIECNGPTNTRVYTVAVYFRGKRLACSNGHSIQQAEMNAAKKALEN 1167 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 71/207 (34%), Gaps = 55/207 (26%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES-------------------------- 39 LE+ I Y F NR L+ ALTH S ++ + Sbjct: 713 LDVLEEHIDYKFINRYTLQLALTHPSYKENFGTNPDHARNSLTNCGIRQPEYGDRKIHFM 772 Query: 40 --------------------YE---------RLEFLGDRILGLLISTLLFNHFDSAKEGE 70 YE RLEFLGD ++ + S LF+ F +EG Sbjct: 773 NTRKRGINTLISIMSRFGKEYETDSNITHNERLEFLGDAVVEFITSIHLFHMFPDLEEGG 832 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ ++V + + +A+ L L F+ + + A+ E+L+ AL LDG Sbjct: 833 LATYRAAIVQNQHLAVLAKTLHLEEFMLYAHGSDLCHELELRHALANCFEALMGALLLDG 892 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDA 157 GIE A Q + Sbjct: 893 GIETADRVFAYALFQEDTNLRNIWVNY 919 >gi|160888577|ref|ZP_02069580.1| hypothetical protein BACUNI_00994 [Bacteroides uniformis ATCC 8492] gi|156861891|gb|EDO55322.1| hypothetical protein BACUNI_00994 [Bacteroides uniformis ATCC 8492] Length = 306 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 114/227 (50%), Gaps = 13/227 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 Y + +G+ + + ++AL H SIS ++ + ERLEFLGD IL ++ ++ Sbjct: 32 ESYFCFYRILGFFPRDIKVYQQALLHKSISMRSEKGRPINNERLEFLGDAILDAIVGDIV 91 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + HF+ +EG L+ + +V ET +++A E+ L ++ S+ S + + + Sbjct: 92 YRHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAF 147 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+ I A+YLD G + F+++ + + K R + K++L EW+ + ++ Sbjct: 148 EAFIGAIYLDQGYDRCKQFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQKN-KMEVSFE 206 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + +++P F V I G++ G SK+ ++Q AA LK+ Sbjct: 207 LIEQFLDEEYNPMFHTEVRIEGISAGTGTGYSKKESQQNAAQMALKK 253 >gi|300741697|ref|ZP_07071718.1| ribonuclease III [Rothia dentocariosa M567] gi|311113800|ref|YP_003985022.1| ribonuclease III [Rothia dentocariosa ATCC 17931] gi|300380882|gb|EFJ77444.1| ribonuclease III [Rothia dentocariosa M567] gi|310945294|gb|ADP41588.1| ribonuclease III [Rothia dentocariosa ATCC 17931] Length = 228 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 90/206 (43%), Gaps = 6/206 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L +R+G + +LTH S + + E ERLEFLGD +L L I+ ++ Sbjct: 10 ELLERLGVDI-DAETFLLSLTHRSYAFENPGVEHNERLEFLGDSVLSLAIAEEVYRRHPE 68 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL + +VSA + AR+L+L IR+ R + SI AD +E++ A Sbjct: 69 LPEGELVKLHHVVVSAPALAIAARKLELGKHIRLGKGERLTGGADKDSILADTMEAIFGA 128 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 Y+ G E A V + RD KT+LQ ++ Y++ GP Sbjct: 129 TYISLGREAARELVLRLIAPMLEDEQILNSGRDWKTDLQTLVTSRSWGDVTYEIEAE-GP 187 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 DH +T ++ G SK+ Sbjct: 188 DHARVYTARAIVAKQTAGTGSGPSKK 213 >gi|271969197|ref|YP_003343393.1| ribonuclease III [Streptosporangium roseum DSM 43021] gi|270512372|gb|ACZ90650.1| Ribonuclease III [Streptosporangium roseum DSM 43021] Length = 243 Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 105/206 (50%), Gaps = 6/206 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65 LE+ + + ++LE+A+TH S ++ + ERLEFLGD +LGL+++ L+ + Sbjct: 16 ELERVLSVRL-DVAILERAMTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRNHPD 74 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ ++V+ + VAR L L F+R+ +SI AD +E+LI + Sbjct: 75 LPEGQLAKLRAAVVNMRALADVARTLGLGRFLRLGRGEEGTGGRDKSSILADTLEALIGS 134 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +Y++ G++ A V + +S D KT LQE ++ PEY V SGP Sbjct: 135 VYVNRGLDEAFRVVHLLFDPLITRSASLGAGLDWKTSLQELTASEALGVPEYHV-EESGP 193 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 DH FT VV + G G SK+ Sbjct: 194 DHAKSFTAVVLLGGEEYGSGSGRSKK 219 >gi|167764094|ref|ZP_02436221.1| hypothetical protein BACSTE_02477 [Bacteroides stercoris ATCC 43183] gi|167698210|gb|EDS14789.1| hypothetical protein BACSTE_02477 [Bacteroides stercoris ATCC 43183] Length = 315 Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 13/227 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 Y K +G+ N E+AL H S S ++ + ERLEFLGD IL ++ ++ Sbjct: 18 ESYFCFYKILGFFPRNIRFYEQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGDIV 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + HF+ +EG L+ + +V ET +++A E+ L ++ S+ S + + + Sbjct: 78 YKHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAF 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+ I A+YLD G E F++K + + K R + K++L EW+ K + ++ Sbjct: 134 EAFIGAIYLDQGYERCKQFMEKKILKNYIDLDKMSRKEVNFKSKLIEWSQ-KTKMEVSFE 192 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + D++P F V I GL+ G SK+ ++Q AA LK+ Sbjct: 193 LIEQFLDQDYNPMFHTEVRIEGLSAGTGTGYSKKESQQNAAQMALKK 239 >gi|229818312|ref|ZP_04448593.1| hypothetical protein BIFANG_03612 [Bifidobacterium angulatum DSM 20098] gi|229784182|gb|EEP20296.1| hypothetical protein BIFANG_03612 [Bifidobacterium angulatum DSM 20098] Length = 246 Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 68/213 (31%), Positives = 99/213 (46%), Gaps = 9/213 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + L + +G + LL +ALTH S +H + + YERLEFLGD +L L+ + LF Sbjct: 24 NELLEALGTTIS-PDLLVQALTHRSFAHEHPGAKHYERLEFLGDAVLELISTETLFRLHP 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EGEL+ VS E S +AR +L + +I + + +SI D+VESLI Sbjct: 83 DMSEGELAKMRAKAVSEEALSAIARTKLHVEPYILLGHGEATQGGAQKSSILCDIVESLI 142 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A +L+ GI+ A V + + + D KT L AH P Y + S Sbjct: 143 GATFLEHGIDGARKVVHRLIDDTLAEVATEGPALDWKTSLTVKAHHLGKGEPVYHM-AVS 201 Query: 182 GPDHDPRFTVVVEISG--LAPAQGMDCSKRAAE 212 GP++ FT V + G SKR A+ Sbjct: 202 GPEYAQVFTARVSLGDDEEILGVGKGSSKRKAQ 234 >gi|329954117|ref|ZP_08295212.1| ribonuclease III [Bacteroides clarus YIT 12056] gi|328528094|gb|EGF55074.1| ribonuclease III [Bacteroides clarus YIT 12056] Length = 327 Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 60/227 (26%), Positives = 111/227 (48%), Gaps = 13/227 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 Y + +G+ + ++AL H S S ++ + ERLEFLGD IL ++ ++ Sbjct: 30 ESYFCFYRILGFFPRDIRFYQQALLHKSTSVRSEKGRPLNNERLEFLGDAILDAIVGDIV 89 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + HF+ +EG L+ + +V ET +++A E+ L ++ S+ S + + + Sbjct: 90 YKHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAF 145 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+ I A+YLD G E F++K + + K R + K++L EW+ + ++ Sbjct: 146 EAFIGAIYLDQGYERCKQFMEKKILKNYIDLDKMSRKEVNFKSKLIEWSQKN-KMEVSFE 204 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + D++P F V I L+ G SK+ ++Q AA LK+ Sbjct: 205 LIEQFLDRDYNPMFHTEVRIESLSAGTGTGYSKKESQQNAAQMALKK 251 >gi|317474593|ref|ZP_07933867.1| ribonuclease III [Bacteroides eggerthii 1_2_48FAA] gi|316909274|gb|EFV30954.1| ribonuclease III [Bacteroides eggerthii 1_2_48FAA] Length = 306 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 111/227 (48%), Gaps = 13/227 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 Y K +G+ N ++AL H S S ++ + ERLEFLGD IL ++ ++ Sbjct: 35 ESYFCFYKILGFFPRNIRFYQQALLHKSTSVRSEKGRPLNNERLEFLGDAILDAIVGDIV 94 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + HF+ +EG L+ + +V ET +++A E+ L ++ S+ S + + + Sbjct: 95 YKHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAF 150 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+LI A+YLD G E F+++ + + K R + K++L EW+ + ++ Sbjct: 151 EALIGAIYLDQGYERCKQFMEEKILKNYIDLDKMSRKEVNFKSKLIEWSQKN-KMEVSFE 209 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + D++P F V I L G SK+ ++Q AA LK+ Sbjct: 210 LIEQFLDRDYNPMFHTEVLIENLPAGTGTGYSKKESQQNAAQMALKK 256 >gi|126655310|ref|ZP_01726749.1| Ribonuclease III [Cyanothece sp. CCY0110] gi|126622789|gb|EAZ93494.1| Ribonuclease III [Cyanothece sp. CCY0110] Length = 240 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 7/205 (3%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N LL+ ALTH +IS +Y++LEF+GD ++ L+ + +L + GE + + L Sbjct: 28 NLELLDLALTHPTISREN--NYQQLEFVGDSVIRLVSAEILLETYPDELVGEFAAIRSIL 85 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGT 137 VS T ++ A + L ++ ++ + +D S AD E+++ ALYL + + Sbjct: 86 VSDRTLAEFAEQYGLDRYLLMADSVAQDTM-GRVSWLADAFEAVLGALYLSTKNMTLVRP 144 Query: 138 FVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVE 194 ++D ++A ++S R++ K LQEW A++ + PEY+VT + HD RF V Sbjct: 145 WLDPLLLKKAAEIRSDPARQNYKDALQEWTQAQYKILPEYRVTEQDKDRGHDERFFAEVS 204 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEV 219 + G SK+ AEQ AA + Sbjct: 205 LKDRKLGSGYGRSKKMAEQAAAKDA 229 >gi|28572359|ref|NP_789139.1| ribonuclease III [Tropheryma whipplei TW08/27] gi|28410490|emb|CAD66876.1| ribonuclease III [Tropheryma whipplei TW08/27] Length = 215 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 9/196 (4%) Query: 20 RSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 LL A H S S + ++ ERLEFLGD +LGL++S LF EG+LS + Sbjct: 10 PGLLRTAFVHKSFSFENGACQNNERLEFLGDAVLGLVVSHYLFETCPEYTEGQLSAARSY 69 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 +VS + +Q+A+EL+L F+ + + TS+ AD++ESLI A+ +D G E A Sbjct: 70 IVSGTSIAQIAKELNLGQFMLLGKGEKLAGGMDKTSLLADLLESLIGAVMVDQGFESARD 129 Query: 138 FVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 FV ++ + G+F D KT+LQ+ + Y+V GP H F V ++ Sbjct: 130 FVLALVGEKLRQVGEFSVDDPKTKLQKLTRTQL----VYEVV-TEGPPHSRTFKASVIVN 184 Query: 197 GLAPAQGMDCSKRAAE 212 G SK+ A+ Sbjct: 185 EKRFF-GQGSSKKQAQ 199 >gi|108804222|ref|YP_644159.1| RNAse III [Rubrobacter xylanophilus DSM 9941] gi|108765465|gb|ABG04347.1| RNAse III [Rubrobacter xylanophilus DSM 9941] Length = 233 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 96/204 (47%), Gaps = 12/204 (5%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 L ++ALTH S++ Y S RLEFLGD IL ++ L+F+ + EG+L+ LV Sbjct: 28 LRKRALTHPSVADPYH-SNGRLEFLGDSILNHRVAELVFHSYPELLEGDLTRIRAHLVRK 86 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 + V R L I S S+ AD VE++I A YL + +D+ Sbjct: 87 SFLASVGRSEGLEEMIESSV--------INDSVIADTVEAIIGAAYLI-DKNLVLRTIDE 137 Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + + + + RD KT LQE A+ P Y+V + GP H P F V + G A Sbjct: 138 IFNPAEVDTDEL-RDWKTLLQETLQAEGL-RPTYRVISKQGPPHRPVFISGVSVDGEEVA 195 Query: 202 QGMDCSKRAAEQVAAAEVLKREGI 225 G S + +EQ AA L+ G+ Sbjct: 196 TGRGSSIKQSEQAAARAALEILGV 219 >gi|28493529|ref|NP_787690.1| ribonuclease III [Tropheryma whipplei str. Twist] gi|81437751|sp|Q83FY2|RNC_TROWT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101654|sp|Q83I82|RNC_TROW8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28476571|gb|AAO44659.1| ribonuclease III [Tropheryma whipplei str. Twist] Length = 223 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 9/196 (4%) Query: 20 RSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 LL A H S S + ++ ERLEFLGD +LGL++S LF EG+LS + Sbjct: 18 PGLLRTAFVHKSFSFENGACQNNERLEFLGDAVLGLVVSHYLFETCPEYTEGQLSAARSY 77 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 +VS + +Q+A+EL+L F+ + + TS+ AD++ESLI A+ +D G E A Sbjct: 78 IVSGTSIAQIAKELNLGQFMLLGKGEKLAGGMDKTSLLADLLESLIGAVMVDQGFESARD 137 Query: 138 FVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 FV ++ + G+F D KT+LQ+ + Y+V GP H F V ++ Sbjct: 138 FVLALVGEKLRQVGEFSVDDPKTKLQKLTRTQL----VYEVV-TEGPPHSRTFKASVIVN 192 Query: 197 GLAPAQGMDCSKRAAE 212 G SK+ A+ Sbjct: 193 EKRFF-GQGSSKKQAQ 207 >gi|195119378|ref|XP_002004208.1| GI19789 [Drosophila mojavensis] gi|193909276|gb|EDW08143.1| GI19789 [Drosophila mojavensis] Length = 1297 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ H Sbjct: 934 DLTRFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 993 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + F T +AD++E+ Sbjct: 994 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKFAVY----ANPKADLKTKDRADLLEAF 1049 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174 + ALY+D G+ F R + D K++LQ+ P Sbjct: 1050 LGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1109 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV SGP + + V V A S + AE AA + L+ Sbjct: 1110 YKVVEASGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALEN 1157 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 3/136 (2%) Query: 29 HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88 H ++S+ ERLEFLGD ++ L S LF F +EG L+ ++V + + +A Sbjct: 783 HETVSNIT--HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLA 840 Query: 89 RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 ++L L F+ + + A+ E+L+ AL LDGGI+VA ++ Sbjct: 841 KKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDD 900 Query: 149 KSGKFRRD-AKTELQE 163 K ++ + LQE Sbjct: 901 KLLAIWKNLPEHPLQE 916 >gi|170594121|ref|XP_001901812.1| RNase3 domain containing protein [Brugia malayi] gi|158590756|gb|EDP29371.1| RNase3 domain containing protein [Brugia malayi] Length = 1329 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 11/228 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + LEK IG F + +L KA T + ++ +RLEFLGD +L L+ + L+ HF Sbjct: 1017 LTELEKNIGITFKHIRVLAKAFTRRNIGFNNLTLGHNQRLEFLGDTVLQLITTDYLYKHF 1076 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS-FMTSIQADVVESL 122 EG LS+ LVS T S + ++ + ++ ++K +AD+VE+ Sbjct: 1077 PYHHEGHLSILRTCLVSNRTQSVICDDIGMTKYLVTPKVMQKSGMPVLRVKDKADLVEAF 1136 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWA----HAKFGVT--PE 174 + ALY+D G + F + R + D K++LQ+ G PE Sbjct: 1137 LGALYVDRGFDYCKVFCRICFFPRLKFFIIAQHWNDPKSQLQQCCLTLRQMDGGEPDIPE 1196 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+ GP + + V V A G + + A+ AA L + Sbjct: 1197 YRTIAVEGPTNTRIYKVAVYFRKKRLAVGCGHTMQLAQMRAAENALIK 1244 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 58/187 (31%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQES--------------------YERL------ 43 ++RI Y F NRSLLE ALTH S +Y + ++RL Sbjct: 786 QERIHYVFKNRSLLELALTHPSYRTNYGTNSDHARNTLNNCGVRSSKQRVHDRLVQQQLS 845 Query: 44 --------------------------------EFLGDRILGLLISTLLFNHFDSAKEGEL 71 EFLGD ++ + + LF F EG L Sbjct: 846 AKKRGFHTLMEIMSKLGSKKAEQSPLNHNERLEFLGDAVIEFITTIHLFYMFSELDEGGL 905 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + +++V + + +A+++ L F+ + S + A+ E+++AA+YLD G Sbjct: 906 ATYRSTMVQNKNLALLAKKIGLDEFMLYAHGPDLCHESDLRHAMANAFEAMMAAIYLDAG 965 Query: 132 IEVAGTF 138 I+ Sbjct: 966 IDECDRI 972 >gi|119025240|ref|YP_909085.1| ribonuclease III [Bifidobacterium adolescentis ATCC 15703] gi|118764824|dbj|BAF39003.1| ribonuclease III [Bifidobacterium adolescentis ATCC 15703] Length = 262 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 108/220 (49%), Gaps = 10/220 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + L + +G LL +ALTH S SH ++ ++YERLEFLGD +L L+ + L+ Sbjct: 4 NVLLEALGTTIE-PDLLVEALTHRSFSHEHEGAKNYERLEFLGDAVLELVSTETLYKVHP 62 Query: 65 SAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS E+ S++ARE L + +I + + + +SI D+VESLI Sbjct: 63 DMNEGQLAKMRAKAVSEESLSKIAREKLHVGPYILLGHGEAEQGGADKSSILCDIVESLI 122 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A ++ GI+ A V + + D KT L AH P Y+ T + Sbjct: 123 GATFIQHGIDEARRVVHHLVDDTLAEVATEGPALDWKTSLTVKAHEMGLPDPHYQ-TSVA 181 Query: 182 GPDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEV 219 GP++ FT + G G SKR A Q+AAAE+ Sbjct: 182 GPEYALEFTARAILGDGGEVIGVGTGSSKRKA-QLAAAEM 220 >gi|189465040|ref|ZP_03013825.1| hypothetical protein BACINT_01384 [Bacteroides intestinalis DSM 17393] gi|189437314|gb|EDV06299.1| hypothetical protein BACINT_01384 [Bacteroides intestinalis DSM 17393] Length = 291 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 114/229 (49%), Gaps = 13/229 (5%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 Y K +G+ N L ++AL H S S ++ + ERLEFLGD IL ++ Sbjct: 16 DKESYLCFYKILGFYPRNIQLYQQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGD 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +++ HF+ +EG L+ + +V ET +++A E+ L ++ S+ S + + + Sbjct: 76 IVYKHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSA----RSSSHNSYMYGN 131 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPE 174 E+ I A+YLD G + F+++ + + K R + K++L EW+ K V Sbjct: 132 AFEAFIGAIYLDQGYKRCKRFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQ-KSKVEVS 190 Query: 175 YKVTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +++ + D++P F + I G+ +G SK+ ++Q AA LK+ Sbjct: 191 FELIEQFLDEDYNPMFHTEIRIEGIPAGKGTGYSKKESQQNAAQAALKK 239 >gi|119713601|gb|ABL97652.1| ribonuclease III [uncultured marine bacterium EB0_39H12] Length = 218 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 14/224 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M Y+ LE Y+F + L + ALTH S+S + ERLEFLGD IL L +S LF Sbjct: 1 MKNSAYTNLE----YSFQDEELFQLALTHKSLSSH---NNERLEFLGDAILNLYVSERLF 53 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + + KEG+L+ S+VS E +VA L+L++ I++ SI +V+E Sbjct: 54 NTYGNLKEGKLTRFKASIVSRENLHRVAINLELSNHIKLGKGESLQGN----SILGNVLE 109 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A++LD +D +K LK + +D K+ LQE ++ P Y + Sbjct: 110 ALIGAIFLDSDYSETKNVLDNIFKDDFLKLVEEEELKDPKSTLQELIQKQYQSLPIYSLN 169 Query: 179 FRSGPDHDPRFTVVVE-ISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + + +F V + G QG +++ AE AA+ +L+ Sbjct: 170 EQISDKKENQFEVTCSVVEGNLVTQGKGNTRKGAELNAASNMLE 213 >gi|207109381|ref|ZP_03243543.1| ribonuclease III [Helicobacter pylori HPKX_438_CA4C1] Length = 197 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 99/180 (55%), Gaps = 4/180 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 20 YTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 77 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA+ +++A+ + L ++RVSS SI + E+L+A Sbjct: 78 YDEGKLSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEEISKGREKPSILSSAFEALMAG 137 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + L D KT LQE A+F V P Y++ GP Sbjct: 138 VYLEAGLAKVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQAQFCVIPTYQLLKEKGP 197 >gi|172038048|ref|YP_001804549.1| ribonuclease III [Cyanothece sp. ATCC 51142] gi|171699502|gb|ACB52483.1| ribonuclease III [Cyanothece sp. ATCC 51142] Length = 242 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 10/222 (4%) Query: 5 RYSTLEKRIGY---AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + T +++G + N LL+ ALTH +IS +Y++LEF+GD ++ L+ + +L Sbjct: 13 QLETCLQKLGVWDTSVVNLELLDLALTHPTISRET--NYQQLEFVGDSVIRLVSAEILLE 70 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + GE + + LVS T ++ A + L ++ ++ + +D S AD E+ Sbjct: 71 TYPDELVGEFAAIRSILVSDRTLAEFAEQYGLDRYLLMADSVAQDTM-GRVSWLADAFEA 129 Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ ALYL + + ++D ++A ++S R++ K LQEW A++ + P+Y+VT Sbjct: 130 VLGALYLSTKNMTLVRPWLDPLLLKKAAEIRSDPARQNYKDALQEWTQAQYKILPDYRVT 189 Query: 179 FRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + HD RF V + G SK+ AEQ AA + Sbjct: 190 EQHKDRGHDERFFAEVSLKDRKLGSGYGRSKKMAEQAAAKDA 231 >gi|171741390|ref|ZP_02917197.1| hypothetical protein BIFDEN_00473 [Bifidobacterium dentium ATCC 27678] gi|171277004|gb|EDT44665.1| hypothetical protein BIFDEN_00473 [Bifidobacterium dentium ATCC 27678] Length = 229 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 101/207 (48%), Gaps = 9/207 (4%) Query: 20 RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 LL +ALTH S SH + ++YERLEFLGD +L L+ + L+ EG+L+ Sbjct: 16 PELLVEALTHRSFSHEHPGAKNYERLEFLGDAVLELVSTETLYAAHPDMTEGQLAKMRAK 75 Query: 78 LVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 VS E+ S +ARE L + +I + + + + +SI D+VESLI A ++ GI+ A Sbjct: 76 AVSEESLSHIAREKLHVGPYILLGNGEAEQHGAEKSSILCDIVESLIGATFIQHGIDEAR 135 Query: 137 TFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 V + + D KT L AH P Y++ SGP++ FT Sbjct: 136 KVVHHLVDDTLAEVATEGPALDWKTSLTVKAHDMGLGEPYYRM-SVSGPEYAQVFTAKAM 194 Query: 195 ISG--LAPAQGMDCSKRAAEQVAAAEV 219 + G G SKR A Q+AAAE Sbjct: 195 LEGSDEVIGIGKGSSKRKA-QLAAAEA 220 >gi|71083743|ref|YP_266463.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1062] gi|91763221|ref|ZP_01265185.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1002] gi|90101634|sp|Q4FLS9|RNC_PELUB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71062856|gb|AAZ21859.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1062] gi|91717634|gb|EAS84285.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1002] Length = 222 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 73/205 (35%), Positives = 114/205 (55%), Gaps = 3/205 (1%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F+++ + K+LTH S + E++EFLGDR+LGL+I+ L + KEG L +F Sbjct: 16 FSDQKIFIKSLTHKSF--DSINNNEKIEFLGDRVLGLIIAKKLLELYPDEKEGVLDKKFA 73 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 SLV+ + C ++A++++L +I V + K + I AD +E+LI A+YLD G+ Sbjct: 74 SLVNKKKCLEIAKKIELEKYILVLNPKNKKI-EIEDKIVADCLEALIGAIYLDKGLNFTE 132 Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 F+ W + S + DAKT+LQE++ F V P YK+ +GP H P F V V++ Sbjct: 133 RFILNLWSEHITASVITQIDAKTKLQEYSLKIFKVLPIYKLISNTGPRHKPLFKVAVKLK 192 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLK 221 SK+ AEQ AA+ L+ Sbjct: 193 NTKFFTAEGTSKKDAEQNAASLCLQ 217 >gi|282856664|ref|ZP_06265932.1| ribonuclease III [Pyramidobacter piscolens W5455] gi|282585513|gb|EFB90813.1| ribonuclease III [Pyramidobacter piscolens W5455] Length = 231 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 ++RIGY F++ +LLE+ALTHSS +H ERLEFLGD +L +LIS LF Sbjct: 11 DLLEFQRRIGYEFSDPALLEEALTHSSYAHERGVPFWNERLEFLGDAVLEVLISEELFRA 70 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A EG+++ SLV E S + S ++ D VE+L Sbjct: 71 RPDASEGQMTRERASLVREEVLSAWGHS---LGLDGLLLLGMGQRGSASENMIGDAVEAL 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I ALYLDGG+E A F+++ R + + + D K+ LQ + G P Y++ R G Sbjct: 128 IGALYLDGGLEQARAFLNR----RPRGAAREQLDPKSRLQILCQERNGPAPYYELLERKG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 P+HDP F + G A+G S++ Sbjct: 184 PEHDPIFIARALLDGRELARGRGTSRK 210 >gi|312069951|ref|XP_003137921.1| RNase3 domain-containing protein [Loa loa] gi|307766916|gb|EFO26150.1| RNase3 domain-containing protein [Loa loa] Length = 1297 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 11/228 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + LEK IG F + +L KA T + ++ +RLEFLGD +L L+ + L+ HF Sbjct: 987 LTELEKSIGVTFKHIRVLAKAFTRRNIGFNNLTLGHNQRLEFLGDTVLQLITTDYLYKHF 1046 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS-FMTSIQADVVESL 122 EG LS+ LVS T S + ++ + ++ ++K +AD+VE+ Sbjct: 1047 PYHHEGHLSILRTCLVSNRTQSVICDDIGMTKYLVTPKVMQKSGLPILRVKDKADLVEAF 1106 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWA----HAKFGVT--PE 174 + ALY+D G + F + R + D K++LQ+ G PE Sbjct: 1107 LGALYVDRGFDYCKVFCRICFFPRLKFFIIAQHWNDPKSQLQQCCLTLRQMDGGEPDIPE 1166 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+ GP + + V V A G + + A+ AA L + Sbjct: 1167 YRTIAVEGPTNTRIYKVAVYFRKKRLAVGCGHTMQLAQMRAAENALIK 1214 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 58/187 (31%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQES--------------------YERL------ 43 ++RI Y F NRSLLE ALTH S +Y + ++RL Sbjct: 756 QERIHYVFKNRSLLELALTHPSYRTNYGTNSDHARNTLNNCGVRSSKQRVHDRLVQQQLS 815 Query: 44 --------------------------------EFLGDRILGLLISTLLFNHFDSAKEGEL 71 EFLGD ++ + + LF F EG L Sbjct: 816 AKKRGFHTLLEIMSKLGSKKAEQSPLNHNERLEFLGDAVIEFITTIHLFYMFSELDEGGL 875 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + +++V + + +A+++ L F+ + S + A+ E+++AA+YLD G Sbjct: 876 ATYRSTMVQNKNLAVLAKKIGLDEFMLYAHGPDLCHESDLRHAMANAFEAMMAAIYLDAG 935 Query: 132 IEVAGTF 138 I+ Sbjct: 936 IDECDRI 942 >gi|313844119|ref|YP_004061782.1| hypothetical protein OlV1_149c [Ostreococcus lucimarinus virus OlV1] gi|312599504|gb|ADQ91526.1| hypothetical protein OlV1_149c [Ostreococcus lucimarinus virus OlV1] Length = 230 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 11/229 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57 M+ +EK +G N SL +A TH S Y+ ES+E LEF+GD +LG +I+ Sbjct: 1 MN-FNQQDIEKLVGTKIKNLSLYHRAFTHKSALKEYEQFNESFETLEFMGDSVLGFIITK 59 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF+ ++ +EG L+ LV +ET + +A ++ L + + + ++ + I D Sbjct: 60 FLFDRYEERQEGFLTKARTKLVRSETLADIALKMGLNNMVLMDEKGMRNNWNNNPKILED 119 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRD--AKTELQEWAHAKFGVTPE 174 V E+L+ A+Y+D G+ A FV + + + K D K L ++ PE Sbjct: 120 VFEALVGAIYMDLGLLHAKEFVLRIYNDPNFIDLNKIMIDDNFKDHLMKYCQIMNIPLPE 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V H+ F + I+G +G SK+ AEQ+AA ++ Sbjct: 180 YRVVG----HHEGIFYIDTYINGQFGGRGEAKSKKQAEQLAARAFFEQL 224 >gi|282896739|ref|ZP_06304747.1| Ribonuclease III [Raphidiopsis brookii D9] gi|281198457|gb|EFA73345.1| Ribonuclease III [Raphidiopsis brookii D9] Length = 276 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 8/199 (4%) Query: 17 FANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F + LL +ALTH S ++ + ERLEFLGD IL + L++ + E EL+ Sbjct: 56 FEDEKLLRQALTHRSYANENPSEGDHNERLEFLGDAILNFISGEYLYSRYPQKGEDELTR 115 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD--GG 131 R ++LV + ++ A E+ L +R+ +D ++ + E++I A YLD Sbjct: 116 RRSALVEEKQLAKFALEVGLNVKMRLGKGTIQDGGYQNPNLLSSTFEAIIGAYYLDNNCN 175 Query: 132 IEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDPR 188 IE V+ + + ++ D+K QEW K P+YK G H P Sbjct: 176 IEAVKLAVEPLFDFVSQHTIESRYNVDSKNRFQEWVQKKLCANPPKYKTQQIGGSPHLPE 235 Query: 189 FTVVVEISGLAPAQGMDCS 207 F V + G QG + Sbjct: 236 FFSRVLVDGKEFGQGNGKN 254 >gi|195026766|ref|XP_001986330.1| GH21300 [Drosophila grimshawi] gi|193902330|gb|EDW01197.1| GH21300 [Drosophila grimshawi] Length = 1324 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 96/228 (42%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E +G F + LL +A T S +H S +RLEFLGD +L L+ S L+ H Sbjct: 966 DLTKFEDSVGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1025 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + + T +AD++E+ Sbjct: 1026 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPQYAVY----ANPKADLKTKDRADLLEAF 1081 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174 + ALY+D G+ F R + D K++LQ+ P Sbjct: 1082 LGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1141 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV +GP + + V V A S + AE AA + L+ Sbjct: 1142 YKVVEATGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALEN 1189 Score = 89.4 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 81/211 (38%), Gaps = 56/211 (26%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY-------------------------------- 36 LE+ IGY F NR LL+ ALTH S +Y Sbjct: 738 LEESIGYKFKNRYLLQLALTHPSYKENYGTNPDHARNSLTNCGIRQPEYGDRKIHYMNTR 797 Query: 37 --------------QESYERL---------EFLGDRILGLLISTLLFNHFDSAKEGELSV 73 + +E L EFLGD ++ L S LF F +EG L+ Sbjct: 798 KRGINTLVSIMSRFGKDHETLSNITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLAT 857 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 ++V + + +A++L L F+ + + A+ E+L+ AL LDGGI+ Sbjct: 858 YRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 917 Query: 134 VAGTFVDKYWKQRALKSGKFRRD-AKTELQE 163 VA ++ K K ++ + LQE Sbjct: 918 VADEVFTDALFRQDDKLLKIWKNLPEHPLQE 948 >gi|332299505|ref|YP_004441426.1| Ribonuclease 3 [Porphyromonas asaccharolytica DSM 20707] gi|332176568|gb|AEE12258.1| Ribonuclease 3 [Porphyromonas asaccharolytica DSM 20707] Length = 259 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 100/225 (44%), Gaps = 14/225 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 +TL RIG L A+ H S S +E + ERLEFLGD +L I T L+ Sbjct: 27 NLTTLFDRIGIVPVRTDLYLLAMRHRSCSIVGEEGEKLNNERLEFLGDAVLEASICTYLY 86 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EGELS +SLVS ++V R L L +I + + I + VE Sbjct: 87 QLHPTWDEGELSKCKSSLVSRPVNNEVGRRLHLERYIIMVPSALDNSVD----IYGNTVE 142 Query: 121 SLIAALYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 +LI A+YLD G E F+ ++ + ++ K+EL EW E++ Sbjct: 143 ALIGAIYLDQGYARTQEFVRDFILPTYRDMQAHTVASIQNYKSELIEWVQKHHLSH-EFR 201 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + HD F V I G +G SK+ A+Q AA + LK Sbjct: 202 LEEHEMAPHD-HFIYSVWIDGKPVGRGAGSSKKRAQQEAARDTLK 245 >gi|194757473|ref|XP_001960989.1| GF13644 [Drosophila ananassae] gi|190622287|gb|EDV37811.1| GF13644 [Drosophila ananassae] Length = 1303 Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 97/228 (42%), Gaps = 17/228 (7%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E+ IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ H Sbjct: 954 ELTKFEESIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1013 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + + T +AD++E+ Sbjct: 1014 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPQY-------ANPKADLKTKDRADLLEAF 1066 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174 + ALY+D G+ F R + D K++LQ+ P Sbjct: 1067 LGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1126 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV SGP + + V V A S + AE AA + L+ Sbjct: 1127 YKVVEASGPTNTRVYKVAVYFRSKRLATSNGSSIQQAEMNAAKQALEN 1174 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 8/156 (5%) Query: 29 HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88 H ++S+ ERLEFLGD ++ L S LF F +EG L+ ++V + + +A Sbjct: 803 HETVSNIT--HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLA 860 Query: 89 RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 ++L L F+ + + A+ E+L+ AL LDGGI+VA ++ Sbjct: 861 KKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDE 920 Query: 149 KSGKFRRD-AKTELQEWAH---AKFGVTPEYKVTFR 180 K ++ + LQE G Y+V Sbjct: 921 KLLNIWKNLPEHPLQE--QEPLGDRGCIESYRVLKE 954 >gi|326693698|ref|ZP_08230703.1| ribonuclease III [Leuconostoc argentinum KCTC 3773] Length = 240 Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 8/209 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L F + LL +ALT + + + Y+RLEFLGD ++ + ++ LF + Sbjct: 17 LRTEFNIVFHDEDLLLEALTQRNYLNEHPNEPGRDYQRLEFLGDSVMQVSVAEYLFKRYP 76 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+L+ ++V + + +R + L +R+ S+ D+ E+ I Sbjct: 77 NWHEGQLTEMRIAMVQTRSFAHFSRLVHLNEAVRLGKGEEMSGARERDSLLEDIWEAFIG 136 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS- 181 ALYLD G + F+++ A+ +G F R D K+ LQE V +Y+ Sbjct: 137 ALYLDQGADAVQEFLERTLFA-AIDTGFFDRFIDFKSRLQEKLQVNGAVVIDYQTEREQA 195 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 D F V + G A+G S + Sbjct: 196 MADKTQVFEASVSVDGHELARGTGKSIKD 224 >gi|314055212|ref|YP_004063550.1| ribonuclease III [Ostreococcus tauri virus 2] gi|313575103|emb|CBI70116.1| ribonuclease III [Ostreococcus tauri virus 2] Length = 230 Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 111/229 (48%), Gaps = 11/229 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57 M+ +E+ +G N S ++A TH S Y+ ES+E LEF+GD +LG +I+ Sbjct: 1 MN-FNQQDIEQLVGTKIKNLSFYQRAFTHKSALKEYEQFNESFETLEFMGDSVLGFIITK 59 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF+ ++ +EG L+ LV +ET + +A +L L + + + +++ + I D Sbjct: 60 FLFDRYEERQEGFLTKARTKLVRSETLADIALKLGLNNMVLMDEKGQRNQWNNNPKILED 119 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRD--AKTELQEWAHAKFGVTPE 174 V E+L+ A+Y+D G+ A FV + + R + D K L + PE Sbjct: 120 VFEALVGAIYMDLGLLHAKEFVLRIYNDPRYINLNAIMIDDNFKDHLMRYCQIMNFQLPE 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V H+ F + I+G +G SK+ AEQ+AA ++ Sbjct: 180 YRVVG----HHEGIFYIDAYINGQFGGRGQAKSKKQAEQLAARAFFEQL 224 >gi|210633204|ref|ZP_03297720.1| hypothetical protein COLSTE_01633 [Collinsella stercoris DSM 13279] gi|210159209|gb|EEA90180.1| hypothetical protein COLSTE_01633 [Collinsella stercoris DSM 13279] Length = 241 Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 71/193 (36%), Positives = 97/193 (50%), Gaps = 3/193 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFN 61 + ++ G AF + SLL A+TH S SYERLEFLGD ILG +++ LF Sbjct: 5 EKLERAQEICGRAFNDTSLLRSAITHPSAVEGEPVSASYERLEFLGDSILGSVVALSLFK 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG+L+ SLVS T S V REL + I + + + M S +V E+ Sbjct: 65 TYGDFDEGKLTRLKVSLVSGATLSDVGRELGIDQVIILGASEQGTGARGMHSALENVYEA 124 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 L+ ALYLDGG E A F+ + K A + + + K+ LQE + P YKV Sbjct: 125 LVGALYLDGGWEAAEAFIMRTLKPHLATERAEHPSNPKSFLQECVQSDHMEAPSYKVVGE 184 Query: 181 SGPDHDPRFTVVV 193 GP H+P FT V Sbjct: 185 EGPAHEPTFTAVA 197 >gi|195581370|ref|XP_002080507.1| GD10519 [Drosophila simulans] gi|194192516|gb|EDX06092.1| GD10519 [Drosophila simulans] Length = 1310 Score = 191 bits (487), Expect = 6e-47, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ H Sbjct: 958 ELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1017 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + + T +AD++E+ Sbjct: 1018 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVY----ANPKADLKTKDRADLLEAF 1073 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174 + ALY+D G+ F R + D K++LQ+ P Sbjct: 1074 LGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1133 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV SGP + + V V A S + AE AA + L+ Sbjct: 1134 YKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1181 Score = 78.2 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 6/146 (4%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ERLEFLGD ++ L S LF F +EG L+ ++V + + +A++L L F+ Sbjct: 815 HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFML 874 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-A 157 + + A+ E+L+ AL LDGGI+VA ++ K ++ Sbjct: 875 YAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLSIWKNLP 934 Query: 158 KTELQEWAH---AKFGVTPEYKVTFR 180 + LQE Y+V Sbjct: 935 EHPLQE--QEPLGDRSCIDSYRVLKE 958 >gi|269101846|ref|ZP_06154543.1| ribonuclease III [Photobacterium damselae subsp. damselae CIP 102761] gi|268161744|gb|EEZ40240.1| ribonuclease III [Photobacterium damselae subsp. damselae CIP 102761] Length = 178 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 3/163 (1%) Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 + +I+ L++ F + EG++S +LV +T +++ RE +L + + K Sbjct: 1 MSFVIADDLYHRFPNVDEGDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFR 60 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAK 168 SI AD VE++I A+YLD IE V +++ R ++ G ++D KT LQE + Sbjct: 61 RDSILADCVEAIIGAIYLDSDIEKVRNIVLDWYQSRLETIQPGVNQKDPKTRLQECLQGR 120 Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 P Y VT G H+ FTV E++GL P G S+R Sbjct: 121 RLPLPAYTVTKVHGEAHNQEFTVQCEVTGLDKPVVGKGGSRRK 163 >gi|325105464|ref|YP_004275118.1| ribonuclease III [Pedobacter saltans DSM 12145] gi|324974312|gb|ADY53296.1| ribonuclease III [Pedobacter saltans DSM 12145] Length = 242 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 102/227 (44%), Gaps = 9/227 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61 L IG+ N SL A H SI+ + S ERLEFLGD +LG +++ +LF Sbjct: 18 VKALRNLIGFVPGNLSLYRMAFRHKSIALGIKKGVKNSNERLEFLGDAVLGAVVAEVLFK 77 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ + +VS +Q+ ++L I ++ S +S+ D E+ Sbjct: 78 MYPYKDEGFLTEMRSKIVSRANLNQLGKKLGFNKLIEFDPS-TVNISSKQSSLLGDAFEA 136 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G F+ + + K+ L EW + ++ + Sbjct: 137 LVGAVYLDKGYNFTKDFLINRILNPHVDIHTLEVTETNFKSRLIEWCQ-RLSKEIQFNLI 195 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 D D FT+ V I G A G+D +K+ AE++AA + + G+ Sbjct: 196 PNQEGDSDKLFTIQVVIDGELMATGVDYNKKNAEKLAAEKTCEMLGV 242 >gi|307069613|ref|YP_003878090.1| ribonuclease III [Candidatus Zinderia insecticola CARI] gi|306482873|gb|ADM89744.1| ribonuclease III [Candidatus Zinderia insecticola CARI] Length = 221 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 67/217 (30%), Positives = 106/217 (48%), Gaps = 6/217 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LEK + Y F N+SLL ALTHSS S+ + E+LEFLGD IL I+++LFN F + Sbjct: 3 KLEKILRYNFNNKSLLFLALTHSSYSNI---NNEKLEFLGDSILNTCITSILFNKFKNES 59 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG LS + LV E ++++++L +F+ + + K+ + SI + +E+L A+Y Sbjct: 60 EGFLSKFRSYLVRREKLYNISKKINLYNFLFLGNSEIKNSGNLKISILSSTLEALFGAIY 119 Query: 128 LDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +D + K +K +D KT LQE P+Y++ + Sbjct: 120 IDSDFNTINNIIYKLYKFDINNFNIKYNIKDFKTLLQENLQKMKYFLPKYEIYKIYKLKN 179 Query: 186 DPRFTVVV-EISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F + + GM + AEQ+AA +LK Sbjct: 180 FQIFKIKCIFVEKNIITYGMAEKIKVAEQIAARFMLK 216 >gi|149278306|ref|ZP_01884444.1| ribonuclease III [Pedobacter sp. BAL39] gi|149231072|gb|EDM36453.1| ribonuclease III [Pedobacter sp. BAL39] Length = 242 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 9/227 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57 + + L+ +G+ N L + A H S++ + + S ERLEFLGD ILG +++ Sbjct: 14 NKVFIKKLKNILGFVPGNTILYQMAFRHRSVAKVLKNGSRSSNERLEFLGDAILGSVVAE 73 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LLF ++ +EG L+ + +V+ +Q+AR++ I S+ D Sbjct: 74 LLFKNYPYKEEGFLTEMRSKIVNRANLNQLARKMGFDQLIVFDQKTVNVQTKH-HSMLGD 132 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPE 174 E+LI A+YLD G F+ K + + + K++L EW Sbjct: 133 AFEALIGAIYLDKGYNFTKDFLLKRIIKPYVDIHTLELTETNFKSKLIEWCQRHGKDVI- 191 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +++ S D FT+ I G + G D +K+ AE++AA + + Sbjct: 192 FEMVQNSEGDSPKLFTISAVIDGESVGIGRDYNKKNAEKLAAEKACE 238 >gi|188997575|ref|YP_001931826.1| Ribonuclease III [Sulfurihydrogenibium sp. YO3AOP1] gi|188932642|gb|ACD67272.1| Ribonuclease III [Sulfurihydrogenibium sp. YO3AOP1] Length = 249 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 103/202 (50%), Gaps = 8/202 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 + LE+ IGY F ++SLL A+TH S Y + YE LEFLGD ++ L+IS +L Sbjct: 20 KVKQLEQIIGYTFKDKSLLLAAITHRSFVAEYHKKIPDYEVLEFLGDAVISLIISEILIK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EGELS +++VS S++AR + F+ +S + + S+ DV E+ Sbjct: 80 QFPHAREGELSQYRSAIVSEAYLSKLARNIYFQDFVLISKGEKSQKGAERESLLCDVFEA 139 Query: 122 LIAALYLDG--GIEVAGTFVDKYWKQRALKS---GKFRRDAKTELQEWAHAKFGVTPEYK 176 + A+Y D +++ +K +K+ + RD K+ LQ +G P YK Sbjct: 140 VFGAIYTDCQYNLDIPREIFNKNFKEIVINDIQQENLPRDYKSLLQIETQRLYGKIPTYK 199 Query: 177 VTFRSGPDHDPRFTVVVEISGL 198 + GP+HD FTV + + Sbjct: 200 LISSEGPEHDKTFTVECHVEEI 221 >gi|282901362|ref|ZP_06309287.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505] gi|281193641|gb|EFA68613.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505] Length = 228 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 8/199 (4%) Query: 17 FANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F N L+ +ALTH S ++ + ERLEFLGD IL + L++ + E EL+ Sbjct: 7 FKNEKLVRQALTHRSYANENPTEGDHNERLEFLGDAILNFISGEYLYSRYPQKGEDELTR 66 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD--GG 131 R ++LV + ++ A E+ L +R+ +D ++ + E++I A YLD Sbjct: 67 RRSALVEEKQLAKFALEVGLNLKMRLGKGTIQDGGYQNPNLLSSTFEAVIGAYYLDNNCN 126 Query: 132 IEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDPR 188 IE V+ + + ++ D+K QEW K P+YK G H P Sbjct: 127 IEAVKVAVEPLFDFVSQHTIESRYNVDSKNRFQEWVQKKLCANPPKYKTQQIGGSPHLPE 186 Query: 189 FTVVVEISGLAPAQGMDCS 207 F V + G QG + Sbjct: 187 FASRVLVDGKEFGQGKGKN 205 >gi|225159274|ref|ZP_03725574.1| Ribonuclease III [Opitutaceae bacterium TAV2] gi|224802127|gb|EEG20399.1| Ribonuclease III [Opitutaceae bacterium TAV2] Length = 250 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 6/210 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + L+ RIG+ F +LLE A+TH S + ++ +RLE LGD +L LL++ L+ Sbjct: 21 LAALQMRIGHKFTTPALLETAITHPSWLQDNPGAPDNNQRLELLGDAVLQLLLTHELYTL 80 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F + +EG LS R L +Q+ARE+ L + +R+S+ + S D E+L Sbjct: 81 FPTDREGPLSKRRAVLSRGGFLAQLAREVGLDTVLRLSASEEQTGGRQRDSALEDAFEAL 140 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAH-AKFGVTPEYKVTF 179 ALYLD G++ + + L++ + + K LQE Y+ Sbjct: 141 FGALYLDAGLDRTREVLRTLYGPLNVRLETTEDTDNPKGRLQERVQPLHGNQALRYETAH 200 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SG DH + + + G SK+ Sbjct: 201 ISGQDHAREYESRLYVLEHQFGTGRGPSKK 230 >gi|87301736|ref|ZP_01084576.1| putative ribonuclease III [Synechococcus sp. WH 5701] gi|87283953|gb|EAQ75907.1| putative ribonuclease III [Synechococcus sp. WH 5701] Length = 259 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 7/208 (3%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + + +E+ALTHSS ++ERLEFLGD +L L + L H + G+ S L Sbjct: 41 DLAPIEEALTHSSAGRPI--NHERLEFLGDAVLRLAAAEFLERHHRAMDVGQRSALRAQL 98 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG-IEVAGT 137 VS +++ + + + + + D + +I+A++ E+LI LY G +E T Sbjct: 99 VSDRWLAELGKRCGIEAMVHLGPVAAGDSAA-RQTIRAEICEALIGGLYETTGSLEPVHT 157 Query: 138 FVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVE 194 ++ +W++ + L + +R + KT LQEW+ A+ P Y+ RS DP RF V+ Sbjct: 158 WLTPHWQRSAKELLADPYRHNWKTGLQEWSQAQGLGLPNYRCEERSRRHGDPRRFHCSVD 217 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + G +G S+R AEQ AA L++ Sbjct: 218 LKGQPVGEGWGGSRRDAEQQAARSALEQ 245 >gi|195474532|ref|XP_002089545.1| GE19158 [Drosophila yakuba] gi|194175646|gb|EDW89257.1| GE19158 [Drosophila yakuba] Length = 1328 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ H Sbjct: 974 ELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1033 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + + T +AD++E+ Sbjct: 1034 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVY----ANPKADLKTKDRADLLEAF 1089 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174 + ALY+D G+ F R + D K++LQ+ P Sbjct: 1090 LGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1149 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV SGP + + V V A S + AE AA + L+ Sbjct: 1150 YKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1197 Score = 77.8 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 8/156 (5%) Query: 29 HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88 H ++S+ ERLEFLGD ++ L S LF F +EG L+ ++V + + +A Sbjct: 823 HETVSNIT--HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLA 880 Query: 89 RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 ++L L F+ + + A+ E+L+ AL LDGGI+VA ++ Sbjct: 881 KKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDE 940 Query: 149 KSGKFRRD-AKTELQEWAH---AKFGVTPEYKVTFR 180 K ++ + LQE Y+V Sbjct: 941 KLLSIWKNLPEHPLQE--QEPLGDRSCIDSYRVLKE 974 >gi|15291861|gb|AAK93199.1| LD29995p [Drosophila melanogaster] Length = 1071 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ H Sbjct: 718 ELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 777 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + + T +AD++E+ Sbjct: 778 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVY----ANPKADLKTKDRADLLEAF 833 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174 + ALY+D G+ F R + D K++LQ+ P Sbjct: 834 LGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 893 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV SGP + + V V A S + AE AA + L+ Sbjct: 894 YKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 941 Score = 95.1 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 82/231 (35%), Gaps = 61/231 (26%) Query: 9 LEKRIGYAFANRSLLEKALTHSS------------------------------------- 31 LE+ IGY F NR LL+ ALTH S Sbjct: 490 LEESIGYRFKNRYLLQLALTHPSYKENYGTNPDHARNSLTNCGIRQPEYGDRKIHYMNTR 549 Query: 32 -------------ISHSYQE-----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 ++ ERLEFLGD ++ L S LF F +EG L+ Sbjct: 550 KRGINTLVSIMSRFGKEHETVSNITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLAT 609 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 ++V + + +A++L L F+ + + A+ E+L+ AL LDGGI+ Sbjct: 610 YRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 669 Query: 134 VAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAH---AKFGVTPEYKVTFR 180 VA ++ K ++ + LQE Y+V Sbjct: 670 VADEVFTDALFRQDEKLLSIWKNLPEHPLQE--QEPLGDRSCIDSYRVLKE 718 >gi|198414531|ref|XP_002121902.1| PREDICTED: similar to ribonuclease III, nuclear, partial [Ciona intestinalis] Length = 1224 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 111/229 (48%), Gaps = 11/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNH 62 + + E IG F + LL KA T ++ + +RLEFLGD + L+ S LF Sbjct: 962 KLTKFEDSIGVKFNHIRLLAKAFTWRNVHENILTHGHNQRLEFLGDSVCNLVASAYLFKL 1021 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR--VSSDLRKDVCSFMTSIQADVVE 120 + + EG L++ ++V+ T S VA EL + ++ + +D + V + AD++E Sbjct: 1022 YPTHHEGHLTLLRATVVNGRTQSLVATELGMPEYVICTLDNDSTERVPEWREKNLADLLE 1081 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTP 173 + +AAL++D G++ TF+ + R + + D K+ LQ+ K P Sbjct: 1082 AFVAALFIDKGLKYVKTFMKICFFPRLKEFILTQEWNDPKSCLQQCCLTLRQEGKEPQLP 1141 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+++ ++GP H ++ V V G +G S + AE+ AA L + Sbjct: 1142 TYEISHQTGPSHSRKYVVTVHFKGEEIGKGTGESIQRAERNAARTALNQ 1190 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 81/217 (37%), Gaps = 63/217 (29%) Query: 6 YSTLEKRIGYAFANRSLLEKALTH------------------------------SSISHS 35 TLEK+IGY F R L A+ H SSI + Sbjct: 732 LRTLEKKIGYEFKERKWLSHAMNHPSCQMNFGLNPDHVRNTLSNCGLRLPRYGDSSIHYK 791 Query: 36 YQ-------------------------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 Y E ERLEFLGD ++G S LF F EG Sbjct: 792 YTRKRGITTLIRIMARLGQQRPVLSPIEHNERLEFLGDAVVGYFTSVHLFLLFPDLSEGA 851 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ LV+ + + +A L L F+ + + + A+ E+L+ A+Y++ Sbjct: 852 LTTFRTVLVNNQHLALLAERLQLDEFMLYAHGPDLCRKADLRHAMANCFEALMGAIYMEA 911 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKT----ELQE 163 G+E A + + + ++ +R ++ +LQE Sbjct: 912 GLERAQ----RLFGEFLWETEALQRVWRSLPLHQLQE 944 >gi|17137682|ref|NP_477436.1| drosha [Drosophila melanogaster] gi|4868118|gb|AAD31170.1| ribonuclease [Drosophila melanogaster] gi|7304132|gb|AAF59169.1| drosha [Drosophila melanogaster] gi|68051279|gb|AAY84903.1| LD20030p [Drosophila melanogaster] Length = 1327 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ H Sbjct: 974 ELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1033 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + + T +AD++E+ Sbjct: 1034 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVY----ANPKADLKTKDRADLLEAF 1089 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174 + ALY+D G+ F R + D K++LQ+ P Sbjct: 1090 LGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1149 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV SGP + + V V A S + AE AA + L+ Sbjct: 1150 YKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1197 Score = 94.8 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 82/231 (35%), Gaps = 61/231 (26%) Query: 9 LEKRIGYAFANRSLLEKALTHSS------------------------------------- 31 LE+ IGY F NR LL+ ALTH S Sbjct: 746 LEESIGYRFKNRYLLQLALTHPSYKENYGTNPDHARNSLTNCGIRQPEYGDRKIHYMNTR 805 Query: 32 -------------ISHSYQE-----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 ++ ERLEFLGD ++ L S LF F +EG L+ Sbjct: 806 KRGINTLVSIMSRFGKEHETVSNITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLAT 865 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 ++V + + +A++L L F+ + + A+ E+L+ AL LDGGI+ Sbjct: 866 YRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 925 Query: 134 VAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAH---AKFGVTPEYKVTFR 180 VA ++ K ++ + LQE Y+V Sbjct: 926 VADEVFTDALFRQDEKLLSIWKNLPEHPLQE--QEPLGDRSCIDSYRVLKE 974 >gi|237755458|ref|ZP_04584082.1| ribonuclease III [Sulfurihydrogenibium yellowstonense SS-5] gi|237692390|gb|EEP61374.1| ribonuclease III [Sulfurihydrogenibium yellowstonense SS-5] Length = 247 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 + LE+ IGY F ++SLL A+TH S Y + YE LEFLGD ++ L+IS +L Sbjct: 15 KIKQLEEIIGYTFKDKSLLLAAITHRSFVAEYHKKIQDYEVLEFLGDAVISLIISEILIK 74 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EGELS +++VS S++AR ++ F+ +S + + S+ DV E+ Sbjct: 75 QFPYAREGELSQYRSAIVSEAYLSKLARNVNFQDFVLISKGEKYQKGAERESLLCDVFEA 134 Query: 122 LIAALYLDG--GIEVAGTFVDKYWKQRALKS---GKFRRDAKTELQEWAHAKFGVTPEYK 176 + A+Y D +++ +K +K+ + RD K+ LQ +G P YK Sbjct: 135 VFGAIYTDCQYNLDIPREIFNKNFKEIVINDIQQENLPRDYKSLLQIETQRLYGKIPTYK 194 Query: 177 VTFRSGPDHDPRFTVVVEISGL 198 + GP+HD FTV + + Sbjct: 195 LISSEGPEHDKTFTVECHVEEI 216 >gi|163955118|ref|YP_001648222.1| hypothetical protein OsV5_145f [Ostreococcus virus OsV5] gi|163638567|gb|ABY27926.1| hypothetical protein OsV5_145f [Ostreococcus virus OsV5] Length = 241 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 13/225 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIST 57 M+ +E+ +G + S ++A TH S Y++ S+E LEF+GD +LG +I+ Sbjct: 1 MN-FNQQDIEQLVGTKIRDLSFYQRAFTHKSALKEYEQFNVSFETLEFMGDSVLGFIITK 59 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF+ ++ +EG L+ LV +ET + +A +L L + + ++ + I D Sbjct: 60 FLFDRYEERQEGFLTKARTKLVRSETLAAIALKLGLNKLVLMDEKGTRNGWNNNPKILED 119 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRD--AKTELQEWAHAKFGVTPE 174 V E+L+ A+Y+D G+ A FV + + + + D K +L PE Sbjct: 120 VFEALVGAIYMDLGLLHAKQFVLRIYNDPKYIDLNSIMVDDNFKDKLMRHCQVNNLPLPE 179 Query: 175 YKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 Y+V H + F V I+G +G SK+ AEQ+AA Sbjct: 180 YEVVS-----HWEGNFYVDALINGRFCGRGQAKSKKQAEQLAAKA 219 >gi|110637800|ref|YP_678007.1| ribonuclease III [Cytophaga hutchinsonii ATCC 33406] gi|110280481|gb|ABG58667.1| RNAse III [Cytophaga hutchinsonii ATCC 33406] Length = 247 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 15/222 (6%) Query: 9 LEKRIGYA----FANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60 L ++I Y N L + A+ H+S + +ESYERLE+LGD ILG +++ LF Sbjct: 23 LAQKIRYVTGMWPGNLHLYQMAIVHTSAADENESGVKESYERLEYLGDSILGAVVAEYLF 82 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG L+ + +V+ E +QV ++L L+ + + K S+ DVVE Sbjct: 83 KRFPFKDEGFLTEIRSRIVNREILNQVGKDLGLSDIVVFNGSKGKQG---HKSLYGDVVE 139 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKV 177 +++ A+YLD G E A FV K + ++ K+ L EW + E+ + Sbjct: 140 AIVGAVYLDKGFENAKKFVLKKIVSSQIDVDAIIQNNKNFKSILLEWCQKENKKL-EFVI 198 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 SG H F V ++ + QG+ SK+ AEQ AA Sbjct: 199 IEESGHRHQKVFKAEVRVADESKGQGIGFSKKKAEQNAAEIA 240 >gi|313886831|ref|ZP_07820536.1| ribonuclease III [Porphyromonas asaccharolytica PR426713P-I] gi|312923721|gb|EFR34525.1| ribonuclease III [Porphyromonas asaccharolytica PR426713P-I] Length = 259 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 14/225 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLF 60 +TL RIG L A+ H S S + + ERLEFLGD +L I T L+ Sbjct: 27 NLTTLFDRIGILPVRTDLYLLAMRHRSCSIVGEGGEKLNNERLEFLGDAVLEASICTYLY 86 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EGELS +SLVS ++V R L L +I + + I + VE Sbjct: 87 QLHPTWDEGELSKCKSSLVSRPVNNEVGRRLHLERYIIMVPSALDNSVD----IYGNTVE 142 Query: 121 SLIAALYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 +LI A+YLD G E F+ ++ + ++ K+EL EW E++ Sbjct: 143 ALIGAIYLDQGYARTQEFVRDFILPTYRDMQAHTVASIQNYKSELIEWVQKHHLSH-EFR 201 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + HD F V I G +G SK+ A+Q AA + LK Sbjct: 202 LEEHEMAPHD-HFIYSVWIDGKPVGRGAGSSKKRAQQEAARDTLK 245 >gi|290343597|ref|YP_003494964.1| hypothetical protein OTV1_125 [Ostreococcus tauri virus 1] gi|260161012|emb|CAY39713.1| hypothetical protein OTV1_125 [Ostreococcus tauri virus 1] Length = 240 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 13/225 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIST 57 M+ +E+ +G + S ++A TH S Y++ S+E LEF+GD +LG +I+ Sbjct: 1 MN-FNQQDIEQLVGTKIRDLSFYQRAFTHKSALKEYEQFNVSFETLEFMGDSVLGFIITK 59 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF+ ++ +EG L+ LV +ET + +A +L L + + ++ + I D Sbjct: 60 FLFDRYEERQEGFLTKARTKLVRSETLAAIALKLGLNKLVLMDEKGTRNGWNNNPKILED 119 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRD--AKTELQEWAHAKFGVTPE 174 V E+L+ A+Y+D G+ A FV + + + + D K +L PE Sbjct: 120 VFEALVGAIYMDLGLLHAKQFVLRIYNDPKYIDLNSIMVDDNFKDKLMRHCQVNNLPLPE 179 Query: 175 YKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 Y+V H + F V I+G +G SK+ AEQ+AA Sbjct: 180 YEVVS-----HWEGNFYVDALINGRFCGRGQAKSKKQAEQLAAKA 219 >gi|298245671|ref|ZP_06969477.1| ribonuclease III [Ktedonobacter racemifer DSM 44963] gi|297553152|gb|EFH87017.1| ribonuclease III [Ktedonobacter racemifer DSM 44963] Length = 251 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 LE + F +RSLL +A+TH S ++SY+ LEFLGD I+ + ++ Sbjct: 9 NLLALEALLQVTFHDRSLLLRAITHHSCCTETALRDSYDTLEFLGDAIISAHVVEYIYRS 68 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTSIQADVVES 121 F +A EG+++ + +VS + + ++L L FIRV ++LR S+ ADV+E+ Sbjct: 69 FPNASEGDMTALKSEVVSRRVFALIGQQLGLFPFIRVDIANLRTFNERSRDSLCADVLEA 128 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 L+ A+++D G EVA FV + + S + + K LQ+ + G P Y+V + Sbjct: 129 LVGAIHIDQGSEVARDFVARAILPMVEQISVQADTNPKGRLQKIILQRTGSLPRYRVLEQ 188 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SG ++D F V V G S + A ++AA E L+ Sbjct: 189 SGRNNDRIFLVGVYDQETLLGLGKASSIKEAGRLAAREALEAL 231 >gi|195332283|ref|XP_002032828.1| GM20991 [Drosophila sechellia] gi|194124798|gb|EDW46841.1| GM20991 [Drosophila sechellia] Length = 1310 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ H Sbjct: 958 ELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1017 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + F T +AD++E+ Sbjct: 1018 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKFAVY----ANPKADLKTKDRADLLEAF 1073 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174 + ALY+D G+ F R + D K++LQ+ P Sbjct: 1074 LGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1133 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV SGP + + V V A S + AE AA + L+ Sbjct: 1134 YKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1181 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 6/146 (4%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ERLEFLGD ++ L S LF F +EG L+ ++V + + +A++L L F+ Sbjct: 815 HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFML 874 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-A 157 + + A+ E+L+ AL LDGGI+VA ++ K ++ Sbjct: 875 YAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLSIWKNLP 934 Query: 158 KTELQEWAH---AKFGVTPEYKVTFR 180 + LQE Y+V Sbjct: 935 EHPLQE--QEPLGDRSCIDSYRVLKE 958 >gi|194863666|ref|XP_001970553.1| GG23313 [Drosophila erecta] gi|190662420|gb|EDV59612.1| GG23313 [Drosophila erecta] Length = 1329 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ H Sbjct: 973 ELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1032 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + + T +AD++E+ Sbjct: 1033 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVY----ANPKADLKTKDRADLLEAF 1088 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174 + ALY+D G+ F R + D K++LQ+ P Sbjct: 1089 LGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1148 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV SGP + + V V A S + AE AA + L+ Sbjct: 1149 YKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1196 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 8/156 (5%) Query: 29 HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88 H ++S+ ERLEFLGD ++ L S LF F +EG L+ ++V + + +A Sbjct: 822 HETVSNIT--HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLA 879 Query: 89 RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 ++L L F+ + + A+ E+L+ AL LDGGI+VA ++ Sbjct: 880 KKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDE 939 Query: 149 KSGKFRRD-AKTELQEWAH---AKFGVTPEYKVTFR 180 K ++ + LQE Y+V Sbjct: 940 KLLSIWKNLPEHPLQE--QEPLGDRSCIDSYRVLKE 973 >gi|312890952|ref|ZP_07750480.1| ribonuclease III [Mucilaginibacter paludis DSM 18603] gi|311296568|gb|EFQ73709.1| ribonuclease III [Mucilaginibacter paludis DSM 18603] Length = 241 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 10/227 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 L+ +G+ N SL A H S++ + ++ S ERLEFLGD ILG +++ +LF Sbjct: 18 VKALKNLLGFVPGNLSLYRLAFRHKSVAQNVKKGVKNSNERLEFLGDAILGCVVAEVLFK 77 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ + +VS +Q+AR+L I S R + S+ D E+ Sbjct: 78 LYPYEDEGFLTELRSKIVSRVNLNQLARKLGFEQLIEYDS--RMVGSTRQGSLLGDAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G + F+ + + + K + + K++L EW + + + Sbjct: 136 LVGAVYLDKGYDFTKNFLVNHIIKSHIDIHKLEQTESNFKSKLIEWCQ-RHSKDVSFDLV 194 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + FT+ I G G + +K+ AE++AA + + I Sbjct: 195 ENKEGESPKLFTIQASIDGEVLGVGKEFNKKNAEKLAAEKACEALSI 241 >gi|304382096|ref|ZP_07364607.1| ribonuclease 3 [Prevotella marshii DSM 16973] gi|304336694|gb|EFM02919.1| ribonuclease 3 [Prevotella marshii DSM 16973] Length = 359 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 111/226 (49%), Gaps = 13/226 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + L + IG+ S ++AL H S++ + + ERLEFLGD IL ++ +++ Sbjct: 20 FLALRRIIGFYPHEISYYQQALMHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV ET +++A+E+ + + I +SS S + + + E+ Sbjct: 80 HFPGKREGFLTNTRSKLVQRETLNRLAKEMGINNLI-LSSG---RTSSHNSYMGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G F++ + + K + K++L EW+ + ++++ Sbjct: 136 LVGAIYLDKGYNACMKFMNHRILGQIINLDKMAYKEVNFKSKLIEWSQKN-RIRLDFELV 194 Query: 179 FRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +P FT V + + G SK+ ++Q A+ + LK+ Sbjct: 195 EQKKDESGNPVFTCKVVLEDVEGCCGTGFSKKESQQTASEKTLKKL 240 >gi|261337990|ref|ZP_05965874.1| ribonuclease III [Bifidobacterium gallicum DSM 20093] gi|270277492|gb|EFA23346.1| ribonuclease III [Bifidobacterium gallicum DSM 20093] Length = 247 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 72/218 (33%), Positives = 98/218 (44%), Gaps = 9/218 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L + +G LL +ALTH S SH +YERLEFLGD +L L+ + LF Sbjct: 23 LLEALGTTLT-PDLLVEALTHRSFSHENPGTRNYERLEFLGDAVLELVATESLFTDHPDL 81 Query: 67 KEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL+ VS E S+VARE L + +I + + + SI D+VESLI A Sbjct: 82 SEGELAKMRAKAVSEEELSRVAREKLHVGPYILLGNGEAAQGGADKDSILCDIVESLIGA 141 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +++ GIE A V + D KT L AH P +++ GP Sbjct: 142 TFVEHGIEGARPVVHHLIDDVLAEMMTEGPALDWKTSLVIKAHELGMDEPHFRM-AVGGP 200 Query: 184 DHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEV 219 ++ P + V I G SKR A+ AA E Sbjct: 201 EYAPEYHAQVLIGDDDRVWGTGDGSSKRKAQLAAAHEA 238 >gi|67923480|ref|ZP_00516956.1| Ribonuclease III [Crocosphaera watsonii WH 8501] gi|67854668|gb|EAM49951.1| Ribonuclease III [Crocosphaera watsonii WH 8501] Length = 238 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 7/205 (3%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + LL+ ALTH +IS +Y++LEF+GD ++ L+ + +L + + GE + + L Sbjct: 28 DLKLLDLALTHPTISKEN--NYQQLEFVGDSVVRLVSAEILLETYPNELVGEFAAIRSIL 85 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGT 137 VS T ++ A L ++ + + +D S AD E+++ ALYL + + Sbjct: 86 VSDRTLAEFADNYGLDRYLLMIDSVAQDKI-GRVSWLADTFEAVLGALYLSTQNMTLIRP 144 Query: 138 FVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVE 194 ++D Q+A ++S R++ K LQEW ++ + P+Y+V + H RF V Sbjct: 145 WLDPLLLQKAAEIRSDPARQNYKDALQEWTQGQYKILPDYRVAEQHQNRGHHQRFFAEVW 204 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEV 219 + G SK+ AEQ AA + Sbjct: 205 LKDRQLGSGYGRSKKMAEQAAAKDA 229 >gi|284045141|ref|YP_003395481.1| ribonuclease III [Conexibacter woesei DSM 14684] gi|283949362|gb|ADB52106.1| ribonuclease III [Conexibacter woesei DSM 14684] Length = 223 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 96/207 (46%), Gaps = 7/207 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF--DSAKEGELSVRFNSLVSA 81 + THSS + +SYERL FLGD +LGL ++T L+ D G L+ VS Sbjct: 17 RQVFTHSSWTDRRADSYERLAFLGDSVLGLAVTTHLYPRLEADRYGAGRLTKIRAQAVSG 76 Query: 82 ETCSQVARELDLASFIRV----SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 +C +VA L + +R D + A V+E++I A+YLD G E Sbjct: 77 RSCMEVAERLGVPERLRAAAPQGVGQNADALVRTERVLASVIEAVIGAVYLDNGYETTAE 136 Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 V + ++ + + D K+ LQE A+ G Y V GP HD F VV E++G Sbjct: 137 AVVEAFEPEIETALEHPVDFKSALQERL-ARRGDVVAYSVASEEGPPHDRVFEVVAEVAG 195 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKREG 224 G SK+ AEQ AA L+ G Sbjct: 196 NQVGSGRGRSKKDAEQEAARTALEAMG 222 >gi|289178059|gb|ADC85305.1| Ribonuclease III [Bifidobacterium animalis subsp. lactis BB-12] Length = 270 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 8/206 (3%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LL +ALTH S SH ++ ++YERLEFLGD +L +++ LF + EG+L+ Sbjct: 41 DLLVEALTHRSFSHEHEGVKNYERLEFLGDAVLEFVVTETLFKQYPDKSEGQLAKIRAKA 100 Query: 79 VSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 VS E+ S +AR+ L + +I + + + +SI D+VESLI A ++ G++ A Sbjct: 101 VSEESLSAIARDRLHVGPYILLGHGESEQGGAEKSSILCDIVESLIGATFVQYGVDKARE 160 Query: 138 FVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 V + + D KT L AH P Y++ GP++ FT + Sbjct: 161 VVHHLVDDTLAEVATEGPALDWKTSLTVKAHEMGLPEPRYQM-SVGGPEYALEFTAFAML 219 Query: 196 SG--LAPAQGMDCSKRAAEQVAAAEV 219 G SKR A+ AA + Sbjct: 220 GDSKEVLGVGNGSSKRKAQLAAAEQA 245 >gi|284992411|ref|YP_003410965.1| ribonuclease III [Geodermatophilus obscurus DSM 43160] gi|284065656|gb|ADB76594.1| ribonuclease III [Geodermatophilus obscurus DSM 43160] Length = 270 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 8/189 (4%) Query: 28 THSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 TH S ++ + + ERLEFLGD +LGL+++ L+ EG L+ S+V+ + + Sbjct: 51 THRSYAYEHGGLPTNERLEFLGDSVLGLVVTDELYQRHPDLPEGRLAKLRASVVNMTSLA 110 Query: 86 QVARE---LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 VAR L + + SI AD VE++I A+++ G++ A V + Sbjct: 111 GVARRLGDGGLGPHLLLGRGEETTGGRDKDSILADAVEAIIGAVHVGLGLDTAAAIVHRL 170 Query: 143 WKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + ++ D KT LQE P Y V +GPDH FT V ++G Sbjct: 171 FDPLLDQAATRGAGLDWKTSLQELGARLGLGAPTY-VVEDTGPDHAKTFTAAVVLAGTVY 229 Query: 201 AQGMDCSKR 209 +G +K+ Sbjct: 230 GRGAGRTKK 238 >gi|325123052|gb|ADY82575.1| ribonuclease III, ds RNA [Acinetobacter calcoaceticus PHEA-2] Length = 176 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 3/172 (1%) Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 ++I+ L++ + + EG L+ +LV E ++A +L L+ + +S+ K Sbjct: 1 MIIANYLYHAYPNENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRE 60 Query: 113 SIQADVVESLIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKF 169 SI AD VE++I A+YLD G + + V K++ ++ +D K+ LQE+ A+ Sbjct: 61 SILADTVEAIIGAIYLDSGDLNLLKDIVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQARK 120 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P Y+V G F V + GL G S+R AEQ AAAE+LK Sbjct: 121 KPLPVYEVVDIQGDAPHQHFKVECVVDGLPKIYGEGSSRRFAEQAAAAEILK 172 >gi|39939094|ref|NP_950860.1| dsRNA-specific ribonuclease [Onion yellows phytoplasma OY-M] gi|81402281|sp|Q6YPW7|RNC_ONYPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|39722203|dbj|BAD04693.1| dsRNA-specific ribonuclease [Onion yellows phytoplasma OY-M] Length = 238 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 7/206 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFN 61 TL + + N +L ++ALTHSS S+ QE ERLEFLGD I+GLL++ L++ Sbjct: 3 NIQTLFQTLNITPQNLTLYKQALTHSSYSNEQNPPQEDNERLEFLGDAIVGLLMADYLYS 62 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG ++ + V + + A ++L +++ + K+ SI AD E+ Sbjct: 63 Q-SKEDEGIMTKKRAQAVCERSLTIYAHNIELQNYLLLGKGE-KNKDFNAKSIIADTFEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 L A+YLD G A L + D KT+LQE ++ T +YK+ Sbjct: 121 LFGAIYLDLGYLTAKKVFHNIVLPH-LAKTIYIIDFKTQLQEIVQSEKK-TIQYKIVQEQ 178 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCS 207 GP H F V + G + Sbjct: 179 GPAHSKNFVAEVYLEKNLLGTGEGST 204 >gi|195455348|ref|XP_002074681.1| GK23200 [Drosophila willistoni] gi|194170766|gb|EDW85667.1| GK23200 [Drosophila willistoni] Length = 1320 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 96/228 (42%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E +G F + LL +A T S +H S +RLEFLGD +L L+ S L+ H Sbjct: 960 ELTKFEDSVGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1019 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + + T +AD++E+ Sbjct: 1020 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVY----ANPKADLKTKDRADLLEAF 1075 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174 + +LY+D G+ F R + D K++LQ+ P Sbjct: 1076 LGSLYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1135 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV SGP + + V V A S + AE AA + L+ Sbjct: 1136 YKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1183 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 8/156 (5%) Query: 29 HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88 H ++S+ ERLEFLGD ++ L S LF F +EG L+ ++V + + +A Sbjct: 809 HETVSNIT--HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLA 866 Query: 89 RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 ++L L F+ + + A+ E+L+ AL LDGGI+VA ++ Sbjct: 867 KKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQEE 926 Query: 149 KSGKFRRD-AKTELQEWAH---AKFGVTPEYKVTFR 180 K ++ + LQE Y+V Sbjct: 927 KLLNIWKNLPEHPLQE--QEPLGDRSCIDSYRVLKE 960 >gi|255534075|ref|YP_003094447.1| ribonuclease III [Pedobacter heparinus DSM 2366] gi|255347059|gb|ACU06385.1| ribonuclease III [Pedobacter heparinus DSM 2366] Length = 242 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 9/231 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57 + L+ +G+ N +L + A H S++ + + S ERLEFLGD +LG +I+ Sbjct: 14 DKVFIRKLKNILGFVPGNATLYKMAFRHRSVAKILKNGSRSSNERLEFLGDAVLGSVIAE 73 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LLF + +EG L+ + +V+ +Q+AR++ I S+ D Sbjct: 74 LLFKSYPYKEEGFLTEMRSKIVNRANLNQLARKMGFDQLIVFDQKAVNVQTKH-HSMLGD 132 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPE 174 E+LI A+YLD G F+ K + + + K++L EW + G Sbjct: 133 AFEALIGAVYLDKGYNFTREFLLKRIVKPYIDIHTLELTETNFKSKLIEWCQ-RHGKDIT 191 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + + + FT+ + G + G D +K+ AE++AA + + I Sbjct: 192 FDMMENEEGESAKLFTIQAVVEGESYGIGRDYNKKNAEKLAAEKACEALSI 242 >gi|284928941|ref|YP_003421463.1| RNAse III [cyanobacterium UCYN-A] gi|284809400|gb|ADB95105.1| RNAse III [cyanobacterium UCYN-A] Length = 243 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 107/205 (52%), Gaps = 7/205 (3%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + +L ALTH + S +++Y++LEF+GD ++ L+ + +L ++ + GE + + L Sbjct: 28 DWEILNLALTHPTFSQ--KDNYQQLEFVGDSVIRLVAAEILLENYPNELVGEFAAIRSIL 85 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGT 137 VS T ++ A L ++ ++ + KD S AD E+L+ ALYL+ + + Sbjct: 86 VSDNTLAEFAEVYGLERYLLMAESVAKDKI-GRVSWLADTFEALLGALYLNRQNMSLIRP 144 Query: 138 FVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVE 194 ++D +A +++ R++ K LQEW+ +++ + P+Y+V G +H RF V Sbjct: 145 WLDPLLITKAAEIRADPARQNYKDALQEWSQSQYKLLPKYQVVQHQGSENHHQRFFAEVW 204 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEV 219 + G CSK+ AEQ AA Sbjct: 205 VKNNNLGSGYGCSKKVAEQAAAKNA 229 >gi|124004144|ref|ZP_01688990.1| ribonuclease III [Microscilla marina ATCC 23134] gi|123990214|gb|EAY29713.1| ribonuclease III [Microscilla marina ATCC 23134] Length = 248 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 64/221 (28%), Positives = 111/221 (50%), Gaps = 10/221 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHF 63 +++ IG+ N +L + AL+H+S S S ++ES ERLE+LGD ILG +++ LF + Sbjct: 23 AIKQIIGHKPFNLALYQLALSHTSASKSLQDGFKESNERLEYLGDAILGAIVADYLFKKY 82 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +EG L+ +V+ E+ +Q++R++ + IR K ++ S+ D +E+L+ Sbjct: 83 PFKEEGFLTEIRARIVNRESLNQLSRKMGIQDLIRY-EGNPKSNFTYK-SMGGDALEALV 140 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFR 180 A+YLD G FV + L ++ K+ + EWA ++++ Sbjct: 141 GAVYLDKGFHYCRKFVVRKIVLGHLDLDDIIENNQNYKSIIIEWAQKNNRDL-KFEIVRE 199 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 G H +F V I A+G SK+ AEQ AA + + Sbjct: 200 EGSKHQRQFIAQVIIDDEPVAKGSGFSKKKAEQAAAEKTCR 240 >gi|224025527|ref|ZP_03643893.1| hypothetical protein BACCOPRO_02267 [Bacteroides coprophilus DSM 18228] gi|224018763|gb|EEF76761.1| hypothetical protein BACCOPRO_02267 [Bacteroides coprophilus DSM 18228] Length = 308 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 115/228 (50%), Gaps = 12/228 (5%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTL 58 Y + +G+ N + ++AL H S S + + ERLEFLGD IL +++ + Sbjct: 16 DKEPYLCFYRMLGFYPRNIEIYQQALLHKSSSVKEKGRLLNNERLEFLGDAILDAVVADI 75 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 ++ F+ +EG L+ + +V ET +QVA ++ L I+ ++ S + + + Sbjct: 76 VYKKFEGKREGFLTNTRSKIVQRETLNQVAVQIGLDKLIKFTT----RQSSHNSYMSGNA 131 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEY 175 E+L+ A+YLD G + F+++ + L K R + K++L EW+ E+ Sbjct: 132 FEALVGAIYLDRGYDACKKFMEERIIAQYLNIDKISRKEVNFKSKLIEWSQKN-KFEVEF 190 Query: 176 KVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 ++T +S D +P F V + + +G SK+ ++Q+AA E LK+ Sbjct: 191 RLTGQSIDSDSNPIFETQVMVENIPAGEGKGYSKKESQQLAAQETLKQ 238 >gi|317968415|ref|ZP_07969805.1| putative ribonuclease III [Synechococcus sp. CB0205] Length = 236 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 13/233 (5%) Query: 1 MSALRYSTLEK---RIGYAFA---NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL 54 M+A R++ L + +G + L++ALTH+S ++E+LEFLGD +L L Sbjct: 1 MNAERHAQLLQFLQALGLTTPAEMDLKRLDEALTHTSAG--LSVNHEKLEFLGDAVLRLA 58 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 S L H+ + G+ S LVS ++ R + + + +R+ D + ++ Sbjct: 59 ASEFLEQHYPNLSVGQSSALRAQLVSDRWLGELGRAVGIDAVLRIGPTAAGDTSA-RETL 117 Query: 115 QADVVESLIAALY-LDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGV 171 +A+ E+ I ALY L G + ++ +W+ RA ++ + K+ LQEW+ + Sbjct: 118 RAEACEACIGALYRLWGDLTPVLLWLTPHWQATARAFEADPHLHNWKSALQEWSQGQKRG 177 Query: 172 TPEYKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P+Y+ S DP RF V + +G S+R AEQ AA L++ Sbjct: 178 LPDYRCEEVSQVHADPRRFHCQVSLGKTTLGEGWGRSRRQAEQEAARVSLEKL 230 >gi|188593372|emb|CAP07635.1| drosha protein [Oikopleura dioica] Length = 1096 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 105/227 (46%), Gaps = 11/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 R + LE+ +G F N LL KALT + + + +RLEFLGD I L + LF H Sbjct: 768 RCAELEELLGVKFKNIRLLAKALTLKNVKYNDITKGHNQRLEFLGDAICNFLAAEYLFKH 827 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ ++V A T + VA+++ L F+ L D + I AD++ES Sbjct: 828 FPLHHEGHLTLLRCTMVGAPTQALVAQQIGLDKFVISRQSLSHDKMGWKQKILADLMESF 887 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGV-----TPEY 175 I AL++D GI F+ + R + D K+ LQ+ PEY Sbjct: 888 IGALFIDRGIIAVDVFMKVAFYPRLKHFIMSQVWNDPKSCLQQCCLTLRPEEGTPDLPEY 947 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + T + R+ V V G +G S + AE+ AA + L++ Sbjct: 948 RTT--TSNSSKMRYRVEVFFRGERIGEGHGPSIQLAEKFAARKALEK 992 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 77/201 (38%), Gaps = 56/201 (27%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESY---------------------- 40 +L+ +GY F N S + +A+TH S ++ + Sbjct: 537 SLESLQTILGYQFKNLSWITRAMTHPSAVYNYGENPDHVRNSTTNCGIRKPIYGEEGPSR 596 Query: 41 -------------------------------ERLEFLGDRILGLLISTLLFNHFDSAKEG 69 ER EFLGD +LG ++S +F+ F + EG Sbjct: 597 PYERKRGIVTLIKVMALLGTSEPKESPINYLERPEFLGDAVLGFVVSVSIFHLFPNLGEG 656 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 LS+ +LV + +A++L L + + + A+ E+++ A+Y+D Sbjct: 657 ALSMLRCALVCNVHLAALAQKLTLEDYFVYIHSQDLAKREDLNNALANCFEAVLGAIYMD 716 Query: 130 GGIEVAGTFVDK-YWKQRALK 149 GG+E + + + +AL+ Sbjct: 717 GGLEPVRQLLARVLFDDKALQ 737 >gi|183601845|ref|ZP_02963214.1| ribonuclease III [Bifidobacterium animalis subsp. lactis HN019] gi|219682760|ref|YP_002469143.1| ribonuclease III [Bifidobacterium animalis subsp. lactis AD011] gi|241190336|ref|YP_002967730.1| ribonuclease III [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195742|ref|YP_002969297.1| ribonuclease III [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218730|gb|EDT89372.1| ribonuclease III [Bifidobacterium animalis subsp. lactis HN019] gi|219620410|gb|ACL28567.1| ribonuclease III [Bifidobacterium animalis subsp. lactis AD011] gi|240248728|gb|ACS45668.1| ribonuclease III [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250296|gb|ACS47235.1| ribonuclease III [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793323|gb|ADG32858.1| ribonuclease III [Bifidobacterium animalis subsp. lactis V9] Length = 258 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 8/206 (3%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LL +ALTH S SH ++ ++YERLEFLGD +L +++ LF + EG+L+ Sbjct: 29 DLLVEALTHRSFSHEHEGVKNYERLEFLGDAVLEFVVTETLFKQYPDKSEGQLAKIRAKA 88 Query: 79 VSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 VS E+ S +AR+ L + +I + + + +SI D+VESLI A ++ G++ A Sbjct: 89 VSEESLSAIARDRLHVGPYILLGHGESEQGGAEKSSILCDIVESLIGATFVQYGVDKARE 148 Query: 138 FVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 V + + D KT L AH P Y++ GP++ FT + Sbjct: 149 VVHHLVDDTLAEVATEGPALDWKTSLTVKAHEMGLPEPRYQM-SVGGPEYALEFTAFAML 207 Query: 196 SG--LAPAQGMDCSKRAAEQVAAAEV 219 G SKR A+ AA + Sbjct: 208 GDSKEVLGVGNGSSKRKAQLAAAEQA 233 >gi|33864214|ref|NP_895774.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9313] gi|33635798|emb|CAE22123.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9313] Length = 281 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 100/204 (49%), Gaps = 7/204 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 ++ALTH+S ++ERLEFLGD +L L S + HF GE S LVS Sbjct: 55 DEALTHTSAQEII--NHERLEFLGDAVLRLAASEYIDRHFPRMNVGERSALRAHLVSDRW 112 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDKY 142 ++V + + + S + + D S ++QA+ E+LI ALY +E ++ + Sbjct: 113 LAEVGQRIGIESVLIIGPMAAGD-ASAKPTLQAEATEALIGALYECWQSLEPIHRWLTPH 171 Query: 143 WKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLA 199 W++ A+ + R ++K+ LQEW+ A+ P Y+ RS DP R+ V + Sbjct: 172 WQEASSAVLTDPHRLNSKSALQEWSQARGLGLPRYECAERSKQHGDPQRYVCQVHLDDRP 231 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 +G S+R AEQ AA L+ Sbjct: 232 IGEGWGGSRRNAEQEAARRSLQAL 255 >gi|328723672|ref|XP_003247913.1| PREDICTED: ribonuclease 3-like [Acyrthosiphon pisum] Length = 1273 Score = 187 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 103/227 (45%), Gaps = 14/227 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E IG F + LL +A T S ++ S +RLEFLGD +L L+ S L+ + Sbjct: 964 KLTNFEDSIGIKFTHIRLLARAFTDRSVGFTNLTLGSNQRLEFLGDTVLQLIASDYLYKY 1023 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T S V +L + S+ T +AD++E+ Sbjct: 1024 FPEHHEGHLSLLRSSLVNNRTQSVVCDDLGMVSYALY----ANPKAELKTKDRADLLEAF 1079 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGV------TPE 174 + ALY+D G+ F + + R + D K++LQ+ V P Sbjct: 1080 LGALYIDKGLTFCQAFCNVCFFPRLHDFILKQDWNDPKSKLQQCCLTLRSVDGGEPDIPV 1139 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YKV GP + ++TV V + +Q S + AE AA L+ Sbjct: 1140 YKVIECMGPTNGRKYTVAVYFKSVRLSQATGHSIQRAEMNAANSALE 1186 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 75/208 (36%), Gaps = 55/208 (26%) Query: 5 RYSTLEKRIGYAFANRSLLEKA--------------------LT--------------H- 29 LE I Y F N+ LL+ A LT H Sbjct: 732 SLEYLEDTIEYKFKNKYLLQLALTHPSYRENFGTNPDHARNTLTNCGIRQPEYGDRRIHY 791 Query: 30 --------------------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 S S ERLEFLGD ++ + S LFN F +EG Sbjct: 792 MNTRKRGINTLINIMSRFGKKSEMESNIMHNERLEFLGDAVVEFVSSIHLFNMFPDIEEG 851 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 L+ ++V + + +A+ L L F+ + S + A+ E+L+ AL+LD Sbjct: 852 GLATFRAAIVQNQHLAVLAKTLKLDDFMLYAHGSDLCHDSELKHAMANCFEALMGALFLD 911 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDA 157 GGIEVA K + + + + + Sbjct: 912 GGIEVADRVFGKTFYRDSPEYLDIWVNY 939 >gi|119713398|gb|ABL97460.1| ribonuclease III [uncultured marine bacterium HF130_81H07] Length = 220 Score = 187 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 10/226 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + LEK +GY+F + L KALTH S +E+ E EFLGD +L L+IS +L Sbjct: 1 MNK-DFKKLEKNLGYSFQKKETLVKALTHVS---KSKENNEVFEFLGDSVLNLIISQILV 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG LS+ + LVS T +++A++L+L SFI L +I + +E Sbjct: 57 EKFSMDDEGTLSLMRSKLVSRTTLNKIAKKLELDSFIVKGDSLA--GQETPENILGNSLE 114 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++ A+Y + G+E ++ + + L +++KT LQE+ P Y Sbjct: 115 AIFGAVYKESGLEFIQKIIETTFAKEIELLREGNLKNSKTLLQEYCQKNKFSLPTYNQIE 174 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + ++ F V ++ + ++G S + AEQ AAA +LK+ G+ Sbjct: 175 KK--ENIYPFIVTCKLDD-SSSEGFGKSLKLAEQDAAARLLKKIGV 217 >gi|312384091|gb|EFR28902.1| hypothetical protein AND_02573 [Anopheles darlingi] Length = 1155 Score = 187 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 99/227 (43%), Gaps = 14/227 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + E IG F + LL +A T S + + +RLEFLGD +L L+ + ++ HF Sbjct: 676 LTRFEDSIGVKFNHIRLLARAFTDRSRGYTALTLGTNQRLEFLGDAVLKLIGTEHVYRHF 735 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 L+ N LVS T + V +L +A + +S+ +AD++E+ I Sbjct: 736 PKHHSQHLADWRNQLVSNRTLATVCDDLGMAHYAIISNP----KTELKMKDRADLLEAFI 791 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGV------TPEY 175 ALY+D G+ + R L + R D KT+LQ+ HA + P Y Sbjct: 792 GALYVDKGLLHCEKLCEVCLFPRLQELIENQERNDPKTKLQQHCHATHPMYGSTPDHPLY 851 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K+ G + TV V G A S R AE+ AA L++ Sbjct: 852 KLIGCIGSMKNRVCTVGVYFRGKQLAIANGHSIRQAEENAARLALEQ 898 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 49/197 (24%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS----------------------------- 35 LEK+I Y F NR L+ ALTH + +++ Sbjct: 459 SLDVLEKQIDYRFTNRYTLQLALTHRTYANNGGTNPDHVRNVLANCGILNMNPRKRNVHS 518 Query: 36 --------------YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 + ERL FLGD ++ S LF+ F + EG LSV ++V Sbjct: 519 MIRPHSGKKSETAFNRRHNERLAFLGDAVIVFSASVPLFHMFPNLGEGGLSVYRGAIVEK 578 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA-GTFVD 140 + +A++L L F+R + AD ++L+ AL LDGGI VA F Sbjct: 579 QHLVVLAKKLHLEEFLRCAHGSAASN-----RTVADCFQALMGALLLDGGIAVASRVFAS 633 Query: 141 KYWKQRALKSGKFRRDA 157 + K + + Sbjct: 634 TLYGPDEPKLHEIWTNY 650 >gi|326798772|ref|YP_004316591.1| ribonuclease 3 [Sphingobacterium sp. 21] gi|326549536|gb|ADZ77921.1| Ribonuclease 3 [Sphingobacterium sp. 21] Length = 243 Score = 187 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 100/225 (44%), Gaps = 9/225 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHF 63 L+ +G+ N L + A H S++ + S ERLEFLGD ILG +++ LLF + Sbjct: 20 ALKNLLGFIPGNLYLYQMAFRHKSVAVQVKKGTKNSNERLEFLGDAILGAVVAELLFKMY 79 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ + +VS +Q+AR+L I+ S + +S+ D E+LI Sbjct: 80 PYKDEGFLTEMRSKIVSRVHLNQLARKLGFDELIQYDSKMVGYPGK-SSSLLGDAFEALI 138 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS---GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 A+YLD G F+ + + + + K+ L EW + Sbjct: 139 GAVYLDKGYMFTRNFLLSRIIKPHVDIHLLEQTETNFKSRLIEWCQSTGNEVLFEVANNA 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G FTV ISG G D +K+ AE++AA + + GI Sbjct: 199 EGES-AKLFTVEAIISGEVRGTGRDYNKKNAEKLAAEKACEALGI 242 >gi|313224789|emb|CBY20581.1| unnamed protein product [Oikopleura dioica] Length = 538 Score = 187 bits (477), Expect = 8e-46, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 105/227 (46%), Gaps = 11/227 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 R + LE+ +G F N LL KALT + + + +RLEFLGD I L + LF H Sbjct: 210 RCAELEELLGVKFKNIRLLAKALTLKNVKYNDITKGHNQRLEFLGDAICNFLAAEYLFKH 269 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ ++V A T + VA+++ L F+ L D + I AD++ES Sbjct: 270 FPLHHEGHLTLLRCTMVGAPTQALVAQQIGLDKFVISRQSLSHDKMGWKQKILADLMESF 329 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGV-----TPEY 175 I AL++D GI F+ + R + D K+ LQ+ PEY Sbjct: 330 IGALFIDRGIIAVDVFMKVAFYPRLKHFIMSQVWNDPKSCLQQCCLTLRPEEGTPDLPEY 389 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + T + R+ V V G +G S + AE+ AA + L++ Sbjct: 390 RTT--TSNSSKMRYRVEVFFRGERIGEGHGPSIQLAEKFAARKALEK 434 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 2/126 (1%) Query: 26 ALTHSSISHSYQESY-ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 AL +S +Y ER EFLGD +LG ++S +F+ F + EG LS+ +LV Sbjct: 54 ALLGTSEPKESPINYLERPEFLGDAVLGFVVSVSIFHLFPNLGEGALSMLRCALVCNVHL 113 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK-YW 143 + +A++L L + + + A+ E+++ A+Y+DGG+E + + + Sbjct: 114 AALAQKLTLEDYFVYIHSQDLAKREDLNNALANCFEAVLGAIYMDGGLEPVRQLLARVLF 173 Query: 144 KQRALK 149 +AL+ Sbjct: 174 DDKALQ 179 >gi|228470695|ref|ZP_04055546.1| ribonuclease III [Porphyromonas uenonis 60-3] gi|228307552|gb|EEK16548.1| ribonuclease III [Porphyromonas uenonis 60-3] Length = 243 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 98/225 (43%), Gaps = 14/225 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLF 60 ++L RIG L A+ H S + + + ERLEFLGD +L I T L+ Sbjct: 11 DLTSLFDRIGIVPVRTDLYLLAMRHRSCTIIGEGGEKLNNERLEFLGDAVLEASICTYLY 70 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+LS +SLVS ++V R L L +I + + I + VE Sbjct: 71 HLHPTWDEGDLSKCKSSLVSRPVNNEVGRRLHLERYIIMVPSALDNSVD----IYGNTVE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF----RRDAKTELQEWAHAKFGVTPEYK 176 +LI A+YLD G FV Y + ++ K+EL EW E++ Sbjct: 127 ALIGAIYLDQGYARTQDFVRDYILPTYRDMREHTVASIQNYKSELIEWVQKHHLSH-EFR 185 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + HD F V I G +G SK+ A+Q AA + L+ Sbjct: 186 LEEHQTMPHD-HFIYSVWIDGKPVGRGAGSSKKRAQQEAARDTLE 229 >gi|327403887|ref|YP_004344725.1| Ribonuclease 3 [Fluviicola taffensis DSM 16823] gi|327319395|gb|AEA43887.1| Ribonuclease 3 [Fluviicola taffensis DSM 16823] Length = 240 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 65/218 (29%), Positives = 108/218 (49%), Gaps = 10/218 (4%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSAKEG 69 R GY N L +A+TH SI++ Q+ ERLEFLGD IL +I+ LF F EG Sbjct: 26 RFGYRPKNIELFYQAVTHRSIAYHGQKDFSNERLEFLGDAILDSIIAEFLFQRFPEEDEG 85 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 L+ + +VS +T S++ EL+L S +R + + ++S++ + E++I A+YLD Sbjct: 86 YLTKVKSKVVSRKTLSEIGEELELRSILRYNKGRSIN----LSSLEGNAFEAIIGAIYLD 141 Query: 130 GGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 E + + ++ + K D K++L W+ + E+ V Sbjct: 142 SSYEETKKIIYNHIFRKYVDLNKILEEEIDFKSKLFIWSQKRRLAL-EFVVLREENNHGT 200 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + V+V+++ + +G SK+ AEQ AA E L G Sbjct: 201 WFYEVIVQVNSVNYGKGSGNSKKLAEQAAAKETLILMG 238 >gi|71894685|ref|YP_278793.1| dsRNA-specific ribonuclease III [Mycoplasma synoviae 53] gi|90101629|sp|Q4A589|RNC_MYCS5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71851473|gb|AAZ44082.1| dsRNA-specific ribonuclease III [Mycoplasma synoviae 53] Length = 231 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 6/225 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLL 59 S ++ + N L +A TH + S + + YERLEFLGD ++G LIS Sbjct: 8 SIEELKAFLQKNNIEYKNIDLFIEATTHKTYSKVNKNSKDYERLEFLGDSLVGFLISDYC 67 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F S + GELS + LV ++A++L + I+ ++ +++ +DVV Sbjct: 68 VREFSSLEPGELSRLRSKLVDKLALFKIAQKLKVEQIIKTGPKKARNEVLSSSNVLSDVV 127 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+LIAA+YLD G++ A F+ ++ + A K+ K +D K+ELQE+ T +Y+ Sbjct: 128 EALIAAIYLDQGMQSAKDFIKSHFYEIANKAQNKPNKDPKSELQEYFQTISAETVKYETI 187 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + F G+ SK+ AE+ AAA L + Sbjct: 188 EI---PNKRSFESKAWHLNKIYGTGVGLSKKDAEKNAAANALSKL 229 >gi|198459728|ref|XP_001361471.2| GA21287 [Drosophila pseudoobscura pseudoobscura] gi|198136788|gb|EAL26049.2| GA21287 [Drosophila pseudoobscura pseudoobscura] Length = 1292 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ H Sbjct: 939 DLTKFEDSIGLKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLISSEYLYRH 998 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + + T +AD++E+ Sbjct: 999 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTKYAVY----ANPKADLKTKDRADLLEAF 1054 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174 + +LY+D G+ F R + D K++LQ+ P Sbjct: 1055 LGSLYVDKGLLFCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1114 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV SGP + + V V A S + AE AA + L+ Sbjct: 1115 YKVVEASGPTNTRVYKVAVYFRSKRLATSSGASIQQAEMNAAKQALEN 1162 Score = 78.2 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 14/149 (9%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ERLEFLGD ++ L S LF F +EG L+ ++V + + +A++L L F+ Sbjct: 796 HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFML 855 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA-GTFVDKYWKQRALKSGKFRRDA 157 + + A+ E+L+ AL LDGGI+VA F + +++ GK Sbjct: 856 YAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTEALFRKE----GKLLNIW 911 Query: 158 KT----ELQEWAH---AKFGVTPEYKVTF 179 K LQE Y+V Sbjct: 912 KNLPEHPLQE--QEPLGDRRCIDSYRVLK 938 >gi|315606951|ref|ZP_07881957.1| ribonuclease III [Prevotella buccae ATCC 33574] gi|315251332|gb|EFU31315.1| ribonuclease III [Prevotella buccae ATCC 33574] Length = 371 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 13/226 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 Y++L IG+ + L E+AL H S+ + + ERLEFLGD IL ++ ++F Sbjct: 20 YTSLYDIIGFYPRDIRLYEQALMHKSVMRRNAKGRPVNNERLEFLGDAILDAIVGDIVFK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV +T +++A+E+ ++ I +S+ S + + + E+ Sbjct: 80 HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGISQLI-LSNG---HNSSHNSYLGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ ALYLD G + F+ K + + K + K++L EW V ++K+ Sbjct: 136 LVGALYLDRGYDACMKFMQKRILSQMINIDKVAYKEVNFKSKLIEWGQKN-RVKLDFKLL 194 Query: 179 FR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + D +P F I G G SK+ ++Q A+ L++ Sbjct: 195 SQGKDKDGNPMFAYQAVIEGCEGGTGKGYSKKESQQTASKLTLEKL 240 >gi|312871483|ref|ZP_07731577.1| ribonuclease III [Lactobacillus iners LEAF 3008A-a] gi|311093003|gb|EFQ51353.1| ribonuclease III [Lactobacillus iners LEAF 3008A-a] Length = 189 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 61/183 (33%), Positives = 93/183 (50%), Gaps = 4/183 (2%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57 M + + + L+++ F N LLE+ALTHSS S+ +Q ++YE+LEFLGD +L L IS Sbjct: 1 MVSESFKNELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ HF + EGEL+ +++V E SQ A E + +++ K ++ D Sbjct: 61 YLYRHFPNMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLED 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176 V E+ AL+LD G+ F+ + RD KTELQE + +YK Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYK 180 Query: 177 VTF 179 V Sbjct: 181 VID 183 >gi|324501501|gb|ADY40667.1| Ribonuclease 3 DROSHA [Ascaris suum] Length = 1304 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 11/226 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + EK IG F + +L KA T + ++ +RLEFLGD +L L+ + L+ HF Sbjct: 999 LTEFEKSIGVTFKHIRVLAKAFTRRNVGFNNLTLGHNQRLEFLGDTVLQLITTDYLYKHF 1058 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS-FMTSIQADVVESL 122 EG LS+ LVS +T S + ++ + ++ + ++K+ +AD+VES Sbjct: 1059 PMHHEGHLSILRTCLVSNKTQSVICDDVGMTKYLVMPKAMQKNGAPVLRVKDKADLVESF 1118 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWA----HAKFGVT--PE 174 + ALY+D G+ F + R + D K++LQ+ G PE Sbjct: 1119 LGALYVDRGLGYCKVFCRVCFFPRLKFFIVSQRWNDPKSQLQQCCLTLRQVDGGEPDIPE 1178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y+ GP + + V V A G + + A+ AA L Sbjct: 1179 YRTIAVEGPTNTRVYKVAVYFRKKRLAVGSGHTMQIAQMHAAENAL 1224 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 51/101 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ + + LF F EG L+ +++V + + +A+++ L F+ Sbjct: 854 NHNERLEFLGDAVIEFITTIHLFFMFTELDEGGLATYRSTMVQNKNLAVLAKKIGLDEFM 913 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 + S + A+ E+++AA+YLD GI+ Sbjct: 914 LYAHGPDLCHESDLRHAMANAFEAMMAAIYLDAGIDECDRI 954 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 18/119 (15%) Query: 10 EKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 E+RI Y F NRSLLE ALTH S ++ + R + + + + D Sbjct: 768 EERIHYIFKNRSLLELALTHPSYRTNYGTNPDHAR-----NTLNNCGVRSAKQRAQDKMV 822 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 + +LS + T ++ +L S + + + + +++I + Sbjct: 823 QQQLSAKKRGF---HTLMEIMSKLG-------SKKVEQSPLNHNER-LEFLGDAVIEFI 870 >gi|195151442|ref|XP_002016656.1| GL11697 [Drosophila persimilis] gi|194110503|gb|EDW32546.1| GL11697 [Drosophila persimilis] Length = 1262 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ H Sbjct: 939 DLTKFEDSIGLKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLISSEYLYRH 998 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + + T +AD++E+ Sbjct: 999 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTKYAVY----ANPKADLKTKDRADLLEAF 1054 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174 + +LY+D G+ F R + D K++LQ+ P Sbjct: 1055 LGSLYVDKGLLFCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1114 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV SGP + + V V A S + AE AA + L+ Sbjct: 1115 YKVVEASGPTNTRVYKVAVYFRSKRLATSSGASIQQAEMNAAKQALEN 1162 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 14/149 (9%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ERLEFLGD ++ L S LF F +EG L+ ++V + + +A++L L F+ Sbjct: 796 HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFML 855 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA-GTFVDKYWKQRALKSGKFRRDA 157 + + A+ E+L+ AL LDGGI+VA F + +++ GK Sbjct: 856 YAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTEALFRKE----GKLLNIW 911 Query: 158 KT----ELQEWAH---AKFGVTPEYKVTF 179 K LQE Y+V Sbjct: 912 KNLPEHPLQE--QEPLGDRRCIDSYRVLK 938 >gi|9632031|ref|NP_048820.1| hypothetical protein PBCV1_A464R [Paramecium bursaria Chlorella virus 1] gi|2500556|sp|Q98514|A464_PBCV1 RecName: Full=Putative protein A464R gi|1620135|gb|AAC96831.1| similar to Bacillus ribonuclease III, corresponds to Swiss-Prot Accession Number P51833 [Paramecium bursaria Chlorella virus 1] Length = 275 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E IG + S + A S + + +YER+EF+GD +LG +I+ L+++F Sbjct: 52 EDVEYLIGMPIIDFSYYKTAF---SYNAIVEGEATYERMEFVGDSVLGFIIARYLYDNFP 108 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS VS + S +A + L +++ + + I DV E+L+ Sbjct: 109 GKDEGFLSRLRTKFVSGKFLSSIALRMGLHNYVIMHQKGLYRGWNTNPRILEDVFEALMG 168 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+Y D GI A F + A ++S + K L + PE+ F G Sbjct: 169 AIYFDLGINAAKQFFMTTLAKYADMQSLMLDTNYKDRLLKHTRKVELPRPEFVSVFEKGG 228 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +P F V V I+G + G S++ AEQ A+ L G+ Sbjct: 229 A-NPSFIVDVVINGQKISTGTGKSRKDAEQNASKIALHTMGV 269 >gi|288925905|ref|ZP_06419835.1| ribonuclease III [Prevotella buccae D17] gi|288337329|gb|EFC75685.1| ribonuclease III [Prevotella buccae D17] Length = 370 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 13/226 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 Y++L IG+ + L E+AL H S+ + + ERLEFLGD IL ++ ++F Sbjct: 19 YTSLYDIIGFYPRDIRLYEQALMHKSVMRRNAKGRPVNNERLEFLGDAILDAIVGDIVFK 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV +T +++A+E+ ++ I +S+ S + + + E+ Sbjct: 79 HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGISQLI-LSNG---HNSSHNSYLGGNAFEA 134 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ ALYLD G + F+ K + + K + K++L EW V ++K+ Sbjct: 135 LVGALYLDRGYDACMKFMQKRILSQMINIDKVAYKEVNFKSKLIEWGQKN-RVKLDFKLL 193 Query: 179 FR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + D +P F I G G SK+ ++Q A+ L++ Sbjct: 194 SQGKDKDGNPMFAYQAVIEGCEGGTGKGYSKKESQQTASKLTLEKL 239 >gi|333029521|ref|ZP_08457582.1| Ribonuclease 3 [Bacteroides coprosuis DSM 18011] gi|332740118|gb|EGJ70600.1| Ribonuclease 3 [Bacteroides coprosuis DSM 18011] Length = 276 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 56/222 (25%), Positives = 108/222 (48%), Gaps = 13/222 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 + +G+ + ++AL H S + ++ + ERLEFLGD +L +++ LLF++FD Sbjct: 23 FYQMLGFVPNDLRYYQQALIHKSSTKVSKDGYYQNNERLEFLGDAVLDAVVADLLFHYFD 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 KEG L+ + +V ET +++A E+ L I S+ S + + E+LI Sbjct: 83 EKKEGFLTNTRSKIVQRETLNKLAVEIGLDKHIIFSTK----SSSHNNYMFGNAFEALIG 138 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFR- 180 A+YLD G + F+++ + L + + K++L EW +++ Sbjct: 139 AIYLDQGYKKCKAFIEQRIIDQFLDLDRLAQTELNFKSKLIEWGQKN-KYKITFELIEEF 197 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +P F V + G++ +G+ SK+ ++Q A+ + L + Sbjct: 198 QDEQSNPVFQTEVLVEGISGGRGVGYSKKESQQNASEKTLDK 239 >gi|218247605|ref|YP_002372976.1| Ribonuclease III [Cyanothece sp. PCC 8801] gi|257061062|ref|YP_003138950.1| ribonuclease III [Cyanothece sp. PCC 8802] gi|218168083|gb|ACK66820.1| Ribonuclease III [Cyanothece sp. PCC 8801] gi|256591228|gb|ACV02115.1| ribonuclease III [Cyanothece sp. PCC 8802] Length = 236 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 114/222 (51%), Gaps = 10/222 (4%) Query: 5 RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + TL +++G + N L+ ALTH +IS ++Y++LEFLGD ++ L + LL Sbjct: 11 QLRTLIQKLGLSEQSPVNYFWLDLALTHPTISQE--KNYQQLEFLGDSVIRLAAAELLLE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + +A GE + + +VS T +++A L S++ VS KD S AD E+ Sbjct: 69 TYPNAPVGEFAALRSMMVSDRTLAELADSFTLESYLLVSDSAAKDKV-GRVSRLADAFEA 127 Query: 122 LIAALYLD-GGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV- 177 ++ ALYL +E+ ++D+ K ++ R++ K +QEW A++ + PEY+V Sbjct: 128 VLGALYLSTHTMELIRPWLDELLKVKAEEIRQDPARQNYKDAVQEWTQAQYKLLPEYRVQ 187 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T +S P P F V + G SK+ AEQ AA + Sbjct: 188 TIKSLPTEQPYFLAEVWLQNRKLGSGEGRSKKMAEQAAAKDA 229 >gi|188995567|ref|YP_001929819.1| putative ribonuclease III [Porphyromonas gingivalis ATCC 33277] gi|188595247|dbj|BAG34222.1| putative ribonuclease III [Porphyromonas gingivalis ATCC 33277] Length = 261 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 14/227 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLF 60 + L +G+ + + E A HSS S Y+ + ERLEFLGD +L IS L+ Sbjct: 22 SFVLLSDILGFKPSRIAFYELAFRHSSCSLVDDEGYRLNNERLEFLGDSVLATAISGYLY 81 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG++S R +++V + + VA++L L F+ V + S I + +E Sbjct: 82 RQHPHWDEGDMSQRRSAIVKRQINNVVAKKLRLDRFLIV-RGEISQMSSD---IMGNTLE 137 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD----AKTELQEWAHAKFGVTPEYK 176 +LI A+YLD G + A FV + + D K+ L EWA E++ Sbjct: 138 ALIGAIYLDKGYQAAEKFVLTRFIPVFHELEDSLTDTTTNYKSLLLEWAQKHHLNL-EFR 196 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + H F V + G G+ +K+ A Q AA + L++ Sbjct: 197 LISEPKRAH-GHFNYAVFVDGHRIGSGIGMNKKEAHQNAAHDALEKL 242 >gi|37929016|gb|AAP70345.1| ribonuclease III [Ehrlichia ruminantium] gi|37929023|gb|AAP70347.1| ribonuclease III [Ehrlichia ruminantium] gi|37929030|gb|AAP70349.1| ribonuclease III [Ehrlichia ruminantium] gi|41814830|gb|AAS10486.1| ribonuclease III [Ehrlichia ruminantium] Length = 171 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 59/165 (35%), Positives = 91/165 (55%) Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +LFN F EG L+ + +LV ++A+ ++L FI +S R + ++ + Sbjct: 1 MLFNIFPYDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGAKNSNNLEN 60 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A+YLDGG++ A F+ +WK A +DAKT LQEWA +K P Y + Sbjct: 61 ALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHI 120 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +SGPDH+P FTV V I +K+ AEQ AA+ +L++ Sbjct: 121 INKSGPDHNPCFTVEVRIDSHETLHATGHNKKLAEQKAASLMLEK 165 >gi|149371093|ref|ZP_01890688.1| putative ribonuclease III [unidentified eubacterium SCB49] gi|149355879|gb|EDM44437.1| putative ribonuclease III [unidentified eubacterium SCB49] Length = 247 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 12/222 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 ++K +G+ + ++ E+A TH S + +E +YERLEFLGD +L +I+ L+ Sbjct: 22 IKKLLGFKPKDITIYEEAFTHRSTNEKTREGHAQNYERLEFLGDAMLSAVIAAHLYKKVP 81 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +VS E +++ R+L+L +R + +++ ++ +V ESL+ Sbjct: 82 GGNEGYLTKMRSKVVSREHLNELGRDLELIKHLRTTIPIKQFGG----NVHGNVFESLVG 137 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G F++K + + K K+ EW K ++ V + Sbjct: 138 AIYLDRGYRYCEKFINKRVIKPYVDIKKLEGKVISYKSLFIEWCQ-KHKSQFKFAVYEDT 196 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G D F V + + + + SK+ AE++AA + Sbjct: 197 GNDKLKHFAVKLHLDNVVVGKARATSKKKAEEMAAKRAYYKL 238 >gi|313768337|ref|YP_004062017.1| hypothetical protein MpV1_134 [Micromonas sp. RCC1109 virus MpV1] gi|312599033|gb|ADQ91057.1| hypothetical protein MpV1_134 [Micromonas sp. RCC1109 virus MpV1] Length = 235 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 10/214 (4%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSA 66 E+ +G N L +KA TH S Y+ ES+E LEF+GD +LG +I+ LF+ F+S Sbjct: 11 EQLVGTKIKNLDLYQKAFTHKSALKEYEQFTESFETLEFIGDSVLGFVITKFLFDRFESR 70 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG L+ LV ET +++A L L + + ++ + I DV E+LI A+ Sbjct: 71 QEGFLTKARTKLVRGETLARIANALGLNELVIMDEKGMRNGWNNNPKILEDVFEALIGAI 130 Query: 127 YLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 Y+D G+ A F+ + ++ L S + K L PEY+V Sbjct: 131 YMDIGLIHAKEFILRIYQDPKLVDLNSIMVDDNYKDHLMRHCQVNNWQLPEYRVAA---- 186 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 H+ F + + I+ L ++G+ SK+ AEQ AA Sbjct: 187 HHEGLFYIDIYINNLFCSRGVAKSKKQAEQNAAQ 220 >gi|17506883|ref|NP_492599.1| Ortholog of Drosophila DRoSHa gene family member (drsh-1) [Caenorhabditis elegans] gi|20141625|sp|O01326|RNC_CAEEL RecName: Full=Ribonuclease 3; AltName: Full=Protein drosha; AltName: Full=Ribonuclease III; Short=RNase III gi|15718161|emb|CAB03006.3| C. elegans protein F26E4.10a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 1086 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 13/228 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+R+G F N LL KA T +I ++ + +RLE+LGD +L L++S L+ F Sbjct: 833 FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 892 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG +S+ SLVS +T + V +L F+ + +AD+VE+ I Sbjct: 893 PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAP---YKTPELKLKDKADLVEAFI 949 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGV------TPEY 175 ALY+D GIE F+ + R + DAK+ LQ+W A PEY Sbjct: 950 GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAMRDPSSSEPDMPEY 1009 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V GP ++ F + V G A + + AE A L Sbjct: 1010 RVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALANL 1057 Score = 95.1 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 64/188 (34%), Gaps = 49/188 (26%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------------------------ 38 E+ I Y F +R ++E AL HSS Y Sbjct: 604 NFSLDVFEEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRRKYGAEDKR 663 Query: 39 -------------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 ERLE+LGD ++ L++S L+ EG L+ Sbjct: 664 EKKRVAGIMSLFNIMKGTSGGEPILHNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLAT 723 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 +LV + +A+ + ++ S + A+ E+++AA+YLDGG+ Sbjct: 724 YRTALVQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALANAFEAVMAAIYLDGGLA 783 Query: 134 VAGTFVDK 141 K Sbjct: 784 PCDVIFSK 791 >gi|193202651|ref|NP_001122460.1| Ortholog of Drosophila DRoSHa gene family member (drsh-1) [Caenorhabditis elegans] gi|159572246|emb|CAP19331.1| C. elegans protein F26E4.10b, confirmed by transcript evidence [Caenorhabditis elegans] Length = 1083 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 13/228 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+R+G F N LL KA T +I ++ + +RLE+LGD +L L++S L+ F Sbjct: 833 FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 892 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG +S+ SLVS +T + V +L F+ + +AD+VE+ I Sbjct: 893 PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAP---YKTPELKLKDKADLVEAFI 949 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGV------TPEY 175 ALY+D GIE F+ + R + DAK+ LQ+W A PEY Sbjct: 950 GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAMRDPSSSEPDMPEY 1009 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V GP ++ F + V G A + + AE A L Sbjct: 1010 RVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALANL 1057 Score = 95.1 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 64/188 (34%), Gaps = 49/188 (26%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------------------------ 38 E+ I Y F +R ++E AL HSS Y Sbjct: 604 NFSLDVFEEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRRKYGAEDKR 663 Query: 39 -------------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 ERLE+LGD ++ L++S L+ EG L+ Sbjct: 664 EKKRVAGIMSLFNIMKGTSGGEPILHNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLAT 723 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 +LV + +A+ + ++ S + A+ E+++AA+YLDGG+ Sbjct: 724 YRTALVQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALANAFEAVMAAIYLDGGLA 783 Query: 134 VAGTFVDK 141 K Sbjct: 784 PCDVIFSK 791 >gi|124024288|ref|YP_001018595.1| ribonuclease III [Prochlorococcus marinus str. MIT 9303] gi|123964574|gb|ABM79330.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9303] Length = 262 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 22/242 (9%) Query: 1 MSALRYSTLEKRI---------------GYAFANRSLLEKALTHSSISHSYQESYERLEF 45 +S R L+ + G ++L++ALTH+S ++ERLEF Sbjct: 17 LSNERVQQLQNLLKKLALVDPARSKSCPGTEPRGLAILDEALTHTSAQEII--NHERLEF 74 Query: 46 LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 LGD +L L S + HF GE S LVS ++V + + + + + + Sbjct: 75 LGDAVLRLAASEYIDRHFPRMDVGERSALRAHLVSDRWLAEVGQRIGIEAVLIIGPMAAG 134 Query: 106 DVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQ 162 D S ++QA+ E+LI ALY +E ++ +W + A+ + R ++K+ LQ Sbjct: 135 D-ASAKPTLQAEATEALIGALYECWQSLEPIHHWLTPHWHEASSAVLADPHRLNSKSALQ 193 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 EW+ A+ P Y+ RS DP R+ V + +G S+R AEQ AA L+ Sbjct: 194 EWSQARGLGLPRYECAERSKQHGDPQRYLCQVHLDNRPIGEGWGGSRRNAEQEAARHSLE 253 Query: 222 RE 223 Sbjct: 254 AL 255 >gi|116074432|ref|ZP_01471694.1| putative ribonuclease III [Synechococcus sp. RS9916] gi|116069737|gb|EAU75489.1| putative ribonuclease III [Synechococcus sp. RS9916] Length = 247 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 7/205 (3%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +L+++ALTH+S ++ERLEFLGD +L L S + H GE S LVS Sbjct: 40 ALVDEALTHTSTGRHI--NHERLEFLGDAVLRLAASEYIEQHHPQLPVGERSALRAQLVS 97 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL-DGGIEVAGTFV 139 + + + + + + + R D + +++A+ E+LI ALY G IE +++ Sbjct: 98 DRWLAALGDSIGIEAVQTIGAKARGDDAA-RATLRAEATEALIGALYQGWGSIEPVHSWL 156 Query: 140 DKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEIS 196 +W+ A+ + + +AK+ LQEW+ A+ P Y +S D RF VE+ Sbjct: 157 TPHWQRTSAAVLADPHKGNAKSALQEWSQARKLGLPTYCSEEQSQRHGDPKRFRCQVELQ 216 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLK 221 G A+G S+R AEQ AA L+ Sbjct: 217 GKTLAEGWGGSRRDAEQRAAQAALQ 241 >gi|37929038|gb|AAP70351.1| ribonuclease III [Ehrlichia ruminantium] gi|37929053|gb|AAP70353.1| ribonuclease III [Ehrlichia ruminantium] gi|37929097|gb|AAP70355.1| ribonuclease III [Ehrlichia ruminantium] gi|37929705|gb|AAP70357.1| ribonuclease III [Ehrlichia ruminantium] gi|37929713|gb|AAP70359.1| ribonuclease III [Ehrlichia ruminantium] Length = 171 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 59/165 (35%), Positives = 90/165 (54%) Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +LFN F EG L+ + +LV ++A+ ++L FI +S R + ++ + Sbjct: 1 MLFNIFPYDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLEN 60 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A+YLDGG+ A F+ +WK A +DAKT LQEWA +K P Y + Sbjct: 61 ALEALIGAIYLDGGLNAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHI 120 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +SGPDH+P FTV V I+ +K+ AEQ AA+ +L + Sbjct: 121 INKSGPDHNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAK 165 >gi|308494532|ref|XP_003109455.1| CRE-DRSH-1 protein [Caenorhabditis remanei] gi|308246868|gb|EFO90820.1| CRE-DRSH-1 protein [Caenorhabditis remanei] Length = 1073 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 13/226 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNH 62 + LE + F N LL KA T ++ H+ + +RLE+LGD +L L++S LF Sbjct: 820 SFHKLENILNIKFNNIRLLAKAFTRRNVPHNDLTKGHNQRLEWLGDSVLQLVVSDYLFRR 879 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG +S+ SLVS +T S V +L F+ +AD+VE+ Sbjct: 880 YPLHHEGHMSLLRTSLVSNQTQSVVCDDLGFLEFVVKPP---HKTPELKMKDKADLVEAF 936 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWA------HAKFGVTPE 174 I ALY+D GIE +F+ + R + + DAK+ LQ+W P+ Sbjct: 937 IGALYVDRGIEHCRSFIRIVFCPRLKHFINSEQWNDAKSHLQQWCLAIRDAQNPNPAMPD 996 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y++ GP ++ F V V G A + + AE AA L Sbjct: 997 YRILSIEGPTNNRIFKVGVYFRGKRLASAAESNVHKAELKAAEIAL 1042 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 65/187 (34%), Gaps = 48/187 (25%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------------------------ 38 S E+ I Y F +R ++E AL HSS Y Sbjct: 593 NFSLSVFEEIIEYQFNDRKVIELALIHSSFRSHYGTPPDHIKNIISNCGYRRKYGSEEKR 652 Query: 39 ------------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 ERLE+LGD ++ L++S L+ EG L+ Sbjct: 653 EKKKGIVSLFNIMGGETEGGEPILHNERLEYLGDAVVELIVSHHLYFMLPHHFEGGLATY 712 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 +LV + +A+ + ++ + + A+ E+++AA+YLDGG+ Sbjct: 713 RTALVQNRNLADLAKNCRIDEMLQYAHGADLINEAEWKHALANAFEAVVAAVYLDGGLGA 772 Query: 135 AGTFVDK 141 K Sbjct: 773 CDRLFSK 779 >gi|155371010|ref|YP_001426544.1| hypothetical protein ATCV1_Z063L [Acanthocystis turfacea Chlorella virus 1] gi|155124330|gb|ABT16197.1| hypothetical protein ATCV1_Z063L [Acanthocystis turfacea Chlorella virus 1] Length = 268 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 94/222 (42%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E IG + +L A S + E++ERLEFLGD +LG LI+ L++ F Sbjct: 45 EEIEGLIGMPVCDFNLYVTAF---SYNPLEENGETFERLEFLGDSVLGFLIARYLYDVFP 101 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ VS + S++A +L L FI +S D E+LI Sbjct: 102 GKNEGVLTRLRVKFVSGKLLSKLAHQLGLHEFIIMSQKGLYRCWHTNPKTLEDAFEALIG 161 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLD GI A F+ + + + K L + P + TF G Sbjct: 162 AIYLDLGINAARQFLMSVLTKHVNIYELMIDANHKDRLVKHCRVLNLAKPTFVTTFERG- 220 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + F V I + +G +++ AEQ AA L R GI Sbjct: 221 GTNSMFVVEARIDNVPHGEGTGTTRKDAEQAAARTALLRLGI 262 >gi|126642554|ref|YP_001085538.1| ribonuclease III [Acinetobacter baumannii ATCC 17978] Length = 176 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 3/172 (1%) Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 ++I+ L++ + EG L+ +LV E ++A +L L+ + +S+ K Sbjct: 1 MIIANYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRE 60 Query: 113 SIQADVVESLIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKF 169 SI AD VE++I A+YLD + + V K++ ++ +D K+ LQE+ A+ Sbjct: 61 SILADTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARK 120 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P Y+V G F V + GL+ G S+R AEQ AAAE+LK Sbjct: 121 KPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILK 172 >gi|5579373|gb|AAD45518.1|AF160248_1 ribonuclease [Caenorhabditis elegans] Length = 860 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 13/228 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+R+G F N LL KA T +I ++ + +RLE+LGD +L L++S L+ F Sbjct: 607 FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 666 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG +S+ SLVS +T + V +L F+ + +AD+VE+ I Sbjct: 667 PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAP---YKTPELKLKDKADLVEAFI 723 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGV------TPEY 175 ALY+D GIE F+ + R + DAK+ LQ+W A PEY Sbjct: 724 GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAMRDPSSSEPDMPEY 783 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V GP ++ F + V G A + + AE A L Sbjct: 784 RVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALANL 831 Score = 95.1 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 64/188 (34%), Gaps = 49/188 (26%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------------------------ 38 E+ I Y F +R ++E AL HSS Y Sbjct: 378 NFSLDVFEEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRRKYGAEDKR 437 Query: 39 -------------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 ERLE+LGD ++ L++S L+ EG L+ Sbjct: 438 EKKRVAGIMSLFNIMKGTSGGEPILHNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLAT 497 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 +LV + +A+ + ++ S + A+ E+++AA+YLDGG+ Sbjct: 498 YRTALVQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALANAFEAVMAAIYLDGGLA 557 Query: 134 VAGTFVDK 141 K Sbjct: 558 PCDVIFSK 565 >gi|255016282|ref|ZP_05288408.1| ribonuclease III [Bacteroides sp. 2_1_7] Length = 256 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 58/224 (25%), Positives = 110/224 (49%), Gaps = 13/224 (5%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63 +L K +G+ N + E+AL H S S + + ERLEFLGD IL ++ +++ + Sbjct: 2 SLSKILGFYPDNLQIYEQALLHKSSSVETGDGKWLNNERLEFLGDGILDAAVADIVYKRY 61 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + +EG L+ + +V ET ++VA +L L + S+ + S + + +E+LI Sbjct: 62 PNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYSTK----INSHNNHMYGNALEALI 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFR 180 A+YLD G +V F+ ++ + R + K+ L EW+ ++ + + Sbjct: 118 GAIYLDQGYDVCYKFIRDVMIEKYIDVDMLVRKEINFKSNLIEWSQKN-KISISFDLIES 176 Query: 181 -SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + D +P F +++ G G+ SK+ ++Q A+ +KR Sbjct: 177 FTDHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKRL 220 >gi|317504409|ref|ZP_07962390.1| ribonuclease III [Prevotella salivae DSM 15606] gi|315664455|gb|EFV04141.1| ribonuclease III [Prevotella salivae DSM 15606] Length = 364 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 109/226 (48%), Gaps = 13/226 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 YS+L +G+ + S + AL H SI + + ERLEFLGD IL ++ +++ Sbjct: 20 YSSLYTILGFYPRDISYYKLALMHKSIMKRNAKGKPVNNERLEFLGDAILDAIVGHIVYQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV ET +++A EL + I +S+ + + + E+ Sbjct: 80 HFPGKREGFLTNTRSKLVQRETLNKLANELGINQLI-LSNGRSSS---HNSYMGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G + F+ + + K + K++L EW+ V + + Sbjct: 136 LVGAVYLDRGYDACMNFMKNRILAQMINIDKVAYKEVNFKSKLIEWSQKN-RVRLTFDIL 194 Query: 179 FRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +S ++ P F V I G+ G+ SK+ ++Q+A+ L+R Sbjct: 195 EQSKDNNGSPVFNYKVVIEGIDGCNGVGYSKKESQQLASKLTLERL 240 >gi|254881153|ref|ZP_05253863.1| ribonuclease III [Bacteroides sp. 4_3_47FAA] gi|294777572|ref|ZP_06743023.1| ribonuclease III [Bacteroides vulgatus PC510] gi|254833946|gb|EET14255.1| ribonuclease III [Bacteroides sp. 4_3_47FAA] gi|294448640|gb|EFG17189.1| ribonuclease III [Bacteroides vulgatus PC510] Length = 308 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 113/227 (49%), Gaps = 13/227 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 Y K +G+ + S+ E+AL H S+S ++ + ERLEFLGD IL +++ ++ Sbjct: 18 ESYLRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIV 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F+ +EG L+ + +V ET +++A E+ L I+ ++ S + + + Sbjct: 78 YKRFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTA----RQSSHNSYMCGNAF 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+L+ A+YLD G F++ + K R + K++L EW+ ++ Sbjct: 134 EALVGAIYLDRGYRACKYFMEHRIIGPYINLEKISRKEVNFKSKLIEWSQKN-RFEVTFE 192 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + +S ++P F V + G++ +G SK+ ++Q+AA L + Sbjct: 193 LITQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGK 239 >gi|302344776|ref|YP_003813129.1| ribonuclease III [Prevotella melaninogenica ATCC 25845] gi|302149813|gb|ADK96075.1| ribonuclease III [Prevotella melaninogenica ATCC 25845] Length = 365 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 13/226 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + IG + S + AL H S++ + + ERLEFLGD IL ++ +++ Sbjct: 31 YLSLYQIIGIIPHDISYYKTALLHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 90 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + +V +T +++A+E+ + I +S+ S + + + E+ Sbjct: 91 HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGIGQLI-LSNG---QTSSHNSYLGGNAFEA 146 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ ALYLD G F+ + + + K + K++L EW+ V E+K+ Sbjct: 147 LVGALYLDHGYNACMKFMKQQVLGKLINIDKVAYKEVNFKSKLIEWSQKN-KVNMEFKLI 205 Query: 179 F-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + P F V + G+ +G SK+ ++Q A+ L+R Sbjct: 206 ENQKDKQGSPTFHFQVIMEGIPCGEGHGYSKKESQQEASKLTLQRL 251 >gi|225010255|ref|ZP_03700727.1| Ribonuclease III [Flavobacteria bacterium MS024-3C] gi|225005734|gb|EEG43684.1| Ribonuclease III [Flavobacteria bacterium MS024-3C] Length = 256 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 63/221 (28%), Positives = 109/221 (49%), Gaps = 12/221 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ + +G+ N S+ +KA H S+ +YERLEFLGD +LG +IS ++N Sbjct: 31 FTGMRNILGFKPKNLSIYKKAFIHRSLHLKDPQGNPLNYERLEFLGDAMLGAIISKYIYN 90 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +A EG L+ + +VS E +++ +EL+L SF+ D + F ++ +V E+ Sbjct: 91 EVPAADEGYLTKMRSKIVSREHLNELGKELNLLSFV----DSKVHKDHFGDNVHGNVFEA 146 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G + F+ + + K K+ L EW + T +++ Sbjct: 147 LVGAIYLDRGYKYCENFIYLKIIEPHVDLAKLEGKVTSYKSLLIEWCQKEKK-TFNFQIF 205 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 SG D F+V + I+ ++G SK+ AE+ AA Sbjct: 206 EDSGNDPIKHFSVRLAINKKVISKGRGPSKKKAEEQAAKRA 246 >gi|134102537|ref|YP_001108198.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338] gi|291007096|ref|ZP_06565069.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338] gi|133915160|emb|CAM05273.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338] Length = 236 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 8/196 (4%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL ALTH S ++ ERLEFLGD +LGL+I+ L+N EG+L+ Sbjct: 9 DAELLTLALTHRSYAYENGGLPPNERLEFLGDAVLGLVITDRLYNEHPDLPEGQLAKLRA 68 Query: 77 SLVSAETCSQVA---RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S+V+ + VA E L ++ + SI AD +E+++ A+YL GI+ Sbjct: 69 SVVNMHALAGVARGLGEGGLGEYLLLGRGEELTGGRDKASILADGLEAVLGAVYLQDGID 128 Query: 134 VAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 VA + + ++ ++ + D KT LQE A PEY+V GPDH F+ Sbjct: 129 VARDVIHRLFEPLLTEAPQRGAGLDWKTSLQELTAAAALGVPEYRV-EEQGPDHRKEFSA 187 Query: 192 VVEISGLAPAQGMDCS 207 V ++G QG + Sbjct: 188 YVSVAGDTLGQGGGRT 203 >gi|150003618|ref|YP_001298362.1| putative ribonuclease III [Bacteroides vulgatus ATCC 8482] gi|189043292|sp|A6KZ76|RNC_BACV8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|149932042|gb|ABR38740.1| putative ribonuclease III [Bacteroides vulgatus ATCC 8482] Length = 308 Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 113/227 (49%), Gaps = 13/227 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 Y K +G+ + S+ E+AL H S+S ++ + ERLEFLGD IL +++ ++ Sbjct: 18 ESYLRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIV 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F+ +EG L+ + +V ET +++A E+ L I+ ++ S + + + Sbjct: 78 YKRFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTA----RQSSHNSYMCGNAF 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+L+ A+YLD G F++ + K R + K++L EW+ ++ Sbjct: 134 EALVGAIYLDRGYRACKYFMEHRIIGPYINLEKISRKEVNFKSKLIEWSQKN-RFEVTFE 192 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + +S ++P F V + G++ +G SK+ ++Q+AA L + Sbjct: 193 LITQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGK 239 >gi|37928957|gb|AAP70337.1| ribonuclease III [Ehrlichia ruminantium] gi|37928988|gb|AAP70339.1| ribonuclease III [Ehrlichia ruminantium] gi|37929002|gb|AAP70341.1| ribonuclease III [Ehrlichia ruminantium] gi|37929010|gb|AAP70343.1| ribonuclease III [Ehrlichia ruminantium] Length = 171 Score = 184 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 59/165 (35%), Positives = 91/165 (55%) Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +LFN F EG L+ + +LV ++A+ ++L FI +S R + ++ + Sbjct: 1 MLFNIFPYDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLEN 60 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A+YLDGG++ A F+ +WK A +DAKT LQEWA +K P Y + Sbjct: 61 ALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHI 120 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +SGPDH+P FTV V I+ +K+ AEQ AA+ +L + Sbjct: 121 INKSGPDHNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAK 165 >gi|325281581|ref|YP_004254123.1| Ribonuclease 3 [Odoribacter splanchnicus DSM 20712] gi|324313390|gb|ADY33943.1| Ribonuclease 3 [Odoribacter splanchnicus DSM 20712] Length = 246 Score = 184 bits (469), Expect = 7e-45, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 18/222 (8%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAK 67 +IG+ N+SL AL H S S + +YERLEFLGD +LG +++ LL+ F Sbjct: 26 QIGFVPNNKSLYRLALLHKSASKMTSKGVVLNYERLEFLGDAVLGAIVAELLYKFFPKKD 85 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ + +VS E+ +++A + L + + K S I DV E+ I A++ Sbjct: 86 EGFLTRVRSKVVSRESLNELAINIGLDKAV-----VAKSDISRNKHIYGDVFEAFIGAMF 140 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LD G F++K+ + K+ L EW V ++ + Sbjct: 141 LDQGFVNTKRFIEKFIFPNFFDIKDLVTIDTNYKSRLIEWGQKN-KVDIHFQTDEVAR-- 197 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223 +F V +S +G SK+ AEQ AA ++L +E Sbjct: 198 GRRKFCCTVMLSEEEKGKGEGTSKKEAEQNAAKIVIDILSKE 239 >gi|261878907|ref|ZP_06005334.1| ribonuclease III [Prevotella bergensis DSM 17361] gi|270334489|gb|EFA45275.1| ribonuclease III [Prevotella bergensis DSM 17361] Length = 366 Score = 184 bits (469), Expect = 7e-45, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 110/224 (49%), Gaps = 13/224 (5%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63 +L + IG+ + S + AL H S++ + + ERLEFLGD IL + +++ HF Sbjct: 28 SLYRIIGFYPHDISHYKMALLHKSVTQHNKMGKRVNNERLEFLGDAILDAAVGDIVYRHF 87 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 KEG L+ + LV +T +++A+EL + I +S+ S + + + E+L+ Sbjct: 88 PGKKEGFLTNTRSKLVQRDTLNKLAKELGINDLI-LSNG---CSSSHNSYMGGNAFEALV 143 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFR 180 A+YLD G + F+ K + + K + K++L EW+ ++++ Sbjct: 144 GAIYLDRGYDACMHFLKKRILAQMINIDKMAYKEVNFKSKLIEWSQKNHIKM-DFELLKE 202 Query: 181 -SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + P F+ V + G+A +G SK+ ++Q A E LKR Sbjct: 203 DKDKNGSPTFSYRVMLEGIAGCEGTGFSKKESQQKACKETLKRL 246 >gi|288801829|ref|ZP_06407271.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella melaninogenica D18] gi|288335871|gb|EFC74304.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella melaninogenica D18] Length = 354 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 13/226 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + IG + S + AL H S++ + + ERLEFLGD IL ++ +++ Sbjct: 20 YLSLYQIIGIIPHDISYYKTALLHKSVARRNAKGKPINNERLEFLGDAILDAIVGDIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + +V +T +++A+E+ + I +S+ S + + + E+ Sbjct: 80 HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGIGQLI-LSNG---QTSSHNSYLGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ ALYLD G F+ + + + K + K++L EW+ V E+K+ Sbjct: 136 LVGALYLDHGYNACMKFMKQQVLGKLINIDKVAYKEVNFKSKLIEWSQKN-KVNMEFKLI 194 Query: 179 F-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + P F V + G+ +G SK+ ++Q A+ L+R Sbjct: 195 ENQKDKQGSPTFHFQVIMEGIPCGEGHGYSKKESQQEASKLTLQRL 240 >gi|87117496|gb|ABD20047.1| Rnc [Shigella dysenteriae] Length = 178 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 3/162 (1%) Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +I+ L++ F EG++S +LV T +++ARE +L +R+ K Sbjct: 1 SYVIANALYHRFPCVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKF 169 SI AD VE+LI ++LD I+ + +++ R + G ++D KT LQE+ + Sbjct: 61 ESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 P Y V G HD FT+ ++SGL P G S+R Sbjct: 121 LPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162 >gi|34541386|ref|NP_905865.1| ribonuclease III [Porphyromonas gingivalis W83] gi|34397703|gb|AAQ66764.1| ribonuclease III [Porphyromonas gingivalis W83] Length = 237 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 100/223 (44%), Gaps = 14/223 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L +G+ + + E A HSS S Y+ + ERLEFLGD +L IS L+ Sbjct: 2 LSDILGFKPSRIAFYELAFRHSSCSLVDDEGYRLNNERLEFLGDSVLATAISGYLYRQHP 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG++S R +++V + + VA++L L F+ V + S I + +E+LI Sbjct: 62 HWDEGDMSQRRSAIVKRQINNVVAKKLRLDRFLIV-RGEISQMSSD---IMGNTLEALIG 117 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD----AKTELQEWAHAKFGVTPEYKVTFR 180 A+YLD G + A FV + + D K+ L EWA E+++ Sbjct: 118 AIYLDKGYQAAEKFVLTRFIPVFHELEDSLTDTTTNYKSLLLEWAQKHHLNL-EFRLISE 176 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H F V + G G+ +K+ A Q AA + L++ Sbjct: 177 PKRAH-GHFNYAVFVDGHRIGSGIGMNKKEAHQNAAHDALEKL 218 >gi|189241708|ref|XP_967454.2| PREDICTED: similar to ribonuclease iii [Tribolium castaneum] Length = 1180 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 104/229 (45%), Gaps = 16/229 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E+ +G F + LL +A T S ++ S +RLEFLGD +L L+ S L+ + Sbjct: 867 NLTKFEESVGLQFNHIRLLARAFTDRSVGYTNLTLGSNQRLEFLGDTVLQLIASEYLYKY 926 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L ++++ ++ T +AD++E+ Sbjct: 927 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMSNYAVYNNP----KAELKTKDRADLLEAF 982 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPE 174 I ALY+D G+E F R + D K++LQ+ P Sbjct: 983 IGALYVDQGLEFCEVFCQVTLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1042 Query: 175 YK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YK V F + + +TV V G A M S + AE AA + L+ Sbjct: 1043 YKSVVCFTNSEVNTRVYTVAVYFRGRRLASAMGHSIQQAEMNAAKKALE 1091 Score = 95.1 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ERLEFLGD ++ L S LF F +EG L+ ++V + + +A+ L L F+ Sbjct: 724 HNERLEFLGDAVVEFLSSIHLFYTFPDLEEGGLATYRAAIVQNQHLAVLAKTLKLDQFML 783 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-A 157 + + A+ E+L+ AL+LDGGI V + + + + Sbjct: 784 YAHGSDLCHDLELRHAMANCFEALMGALFLDGGINVVDRVFSETLFKVNPDLLEVWMNLP 843 Query: 158 KTELQE 163 LQE Sbjct: 844 PHPLQE 849 >gi|87117424|gb|ABD19999.1| Rnc [Shigella flexneri] Length = 178 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 3/162 (1%) Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +I+ L++ F A EG++S +LV T +++ARE +L +R+ K Sbjct: 1 SYVIANALYHRFPRADEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKF 169 SI AD VE+LI ++LD I+ + +++ R + G ++D KT LQE+ + Sbjct: 61 ESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 P Y V G HD FT+ ++SGL P G S+R Sbjct: 121 LPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162 >gi|301312334|ref|ZP_07218251.1| ribonuclease III [Bacteroides sp. 20_3] gi|300829756|gb|EFK60409.1| ribonuclease III [Bacteroides sp. 20_3] Length = 280 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 13/226 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L K +G+ N + E+AL H S S + + ERLEFLGD IL ++ +++ Sbjct: 24 YLSLSKILGFYPDNLQIYEQALLHKSSSVETDDGKWLNNERLEFLGDGILDAAVADIVYK 83 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + +EG L+ + +V ET ++VA +L L + S+ + S + + +E+ Sbjct: 84 RYPNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYSTK----INSHNNHMYGNALEA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178 LI A+YLD G +V F+ ++ + R + K+ L EW+ ++ + + Sbjct: 140 LIGAIYLDQGYDVCYKFIRDVMIEKYIDVDTLVRKEINFKSNLIEWSQKN-KISISFDLI 198 Query: 179 FR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + D +P F +++ G G+ SK+ ++Q A+ +KR Sbjct: 199 ESFTDHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKRL 244 >gi|7499923|pir||T21419 hypothetical protein F26E4.13 - Caenorhabditis elegans Length = 412 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 13/228 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+R+G F N LL KA T +I ++ + +RLE+LGD +L L++S L+ F Sbjct: 162 FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 221 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG +S+ SLVS +T + V +L F+ + +AD+VE+ I Sbjct: 222 PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAP---YKTPELKLKDKADLVEAFI 278 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGV------TPEY 175 ALY+D GIE F+ + R + DAK+ LQ+W A PEY Sbjct: 279 GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAMRDPSSSEPDMPEY 338 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V GP ++ F + V G A + + AE A L Sbjct: 339 RVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALANL 386 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 48/103 (46%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ERLE+LGD ++ L++S L+ EG L+ +LV + +A+ + ++ Sbjct: 18 HNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQ 77 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 S + A+ E+++AA+YLDGG+ K Sbjct: 78 YSHGADLINVAEFKHALANAFEAVMAAIYLDGGLAPCDVIFSK 120 >gi|282877263|ref|ZP_06286095.1| RNase3 domain protein [Prevotella buccalis ATCC 35310] gi|281300604|gb|EFA92941.1| RNase3 domain protein [Prevotella buccalis ATCC 35310] Length = 350 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 109/227 (48%), Gaps = 15/227 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 YS+L + IG+ + S + AL H S+ + + ERLEFLGD IL + +++ Sbjct: 20 YSSLYRIIGFYPHDISYYKLALMHKSVMRRNAKGKPVNNERLEFLGDAILDATVGHIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV T +++A E+ + I +SS S + + + E+ Sbjct: 80 HFPGKREGFLTNTRSKLVQRSTLNKLANEMGICKLI-LSSG---RNASHNSYMGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G + F+ + L K + K++L EW+ V +K+ Sbjct: 136 LVGAIYLDRGYDACMRFMKDRILKEMLNIDKVAYKEVNFKSKLIEWSQKN-KVKINFKLL 194 Query: 179 FRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + G D +P F E+ G+ G SK+ ++Q+A+ L++ Sbjct: 195 NQ-GQDKNGNPVFKYAAELEGIEGCSGEGFSKKESQQLASKLTLEQL 240 >gi|319640160|ref|ZP_07994887.1| ribonuclease 3 [Bacteroides sp. 3_1_40A] gi|317388438|gb|EFV69290.1| ribonuclease 3 [Bacteroides sp. 3_1_40A] Length = 308 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 113/230 (49%), Gaps = 19/230 (8%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 Y K +G+ + S+ E+AL H S+S ++ + ERLEFLGD IL +++ ++ Sbjct: 18 ESYLRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIV 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F+ +EG L+ + +V ET +++A E+ L I+ ++ S + + + Sbjct: 78 YKRFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTA----RQSSHNSYMCGNAF 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+L+ A+YLD G F++ + K R + K++L EW+ ++ Sbjct: 134 EALVGAIYLDRGYRACKYFMEHRIIGPYINLEKISRKEVNFKSKLIEWSQKN-RFEVTFE 192 Query: 177 VTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + +S HD P F V + G++ +G SK+ ++Q+AA L + Sbjct: 193 LITQS---HDQGYSPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGK 239 >gi|87117418|gb|ABD19995.1| Rnc [Shigella flexneri] gi|87117421|gb|ABD19997.1| Rnc [Shigella flexneri] gi|87117427|gb|ABD20001.1| Rnc [Shigella flexneri] gi|87117430|gb|ABD20003.1| Rnc [Shigella dysenteriae] gi|87117433|gb|ABD20005.1| Rnc [Shigella flexneri] gi|87117436|gb|ABD20007.1| Rnc [Shigella flexneri] gi|87117439|gb|ABD20009.1| Rnc [Shigella flexneri] gi|87117442|gb|ABD20011.1| Rnc [Shigella boydii] gi|87117445|gb|ABD20013.1| Rnc [Shigella dysenteriae] gi|87117448|gb|ABD20015.1| Rnc [Shigella dysenteriae] gi|87117451|gb|ABD20017.1| Rnc [Shigella boydii] gi|87117454|gb|ABD20019.1| Rnc [Shigella boydii] gi|87117457|gb|ABD20021.1| Rnc [Shigella dysenteriae] gi|87117460|gb|ABD20023.1| Rnc [Shigella dysenteriae] gi|87117466|gb|ABD20027.1| Rnc [Shigella dysenteriae] gi|87117469|gb|ABD20029.1| Rnc [Shigella boydii] gi|87117472|gb|ABD20031.1| Rnc [Shigella boydii] gi|87117475|gb|ABD20033.1| Rnc [Shigella boydii] gi|87117478|gb|ABD20035.1| Rnc [Shigella dysenteriae] gi|87117481|gb|ABD20037.1| Rnc [Shigella flexneri] gi|87117484|gb|ABD20039.1| Rnc [Shigella dysenteriae] gi|87117487|gb|ABD20041.1| Rnc [Shigella boydii] gi|87117490|gb|ABD20043.1| Rnc [Shigella boydii] gi|87117493|gb|ABD20045.1| Rnc [Shigella boydii] gi|87117499|gb|ABD20049.1| Rnc [Shigella dysenteriae] gi|87117502|gb|ABD20051.1| Rnc [Shigella boydii] gi|87117505|gb|ABD20053.1| Rnc [Shigella dysenteriae] gi|87117508|gb|ABD20055.1| Rnc [Shigella boydii] gi|87117511|gb|ABD20057.1| Rnc [Shigella boydii] gi|87117517|gb|ABD20061.1| Rnc [Shigella boydii] gi|87117523|gb|ABD20065.1| Rnc [Shigella boydii] gi|87117526|gb|ABD20067.1| Rnc [Shigella flexneri] gi|87117529|gb|ABD20069.1| Rnc [Shigella flexneri] gi|87117532|gb|ABD20071.1| Rnc [Shigella boydii] gi|87117535|gb|ABD20073.1| Rnc [Escherichia coli] gi|87117538|gb|ABD20075.1| Rnc [Escherichia coli] gi|87117541|gb|ABD20077.1| Rnc [Escherichia coli] Length = 178 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 3/162 (1%) Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +I+ L++ F EG++S +LV T +++ARE +L +R+ K Sbjct: 1 SYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKF 169 SI AD VE+LI ++LD I+ + +++ R + G ++D KT LQE+ + Sbjct: 61 ESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 P Y V G HD FT+ ++SGL P G S+R Sbjct: 121 LPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162 >gi|87117520|gb|ABD20063.1| Rnc [Shigella boydii] Length = 178 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 3/162 (1%) Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +I+ +L++ F EG++S +LV T +++ARE +L +R+ K Sbjct: 1 SYVIANVLYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKF 169 SI AD VE+LI ++LD I+ + +++ R + G ++D KT LQE+ + Sbjct: 61 ESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 P Y V G HD FT+ ++SGL P G S+R Sbjct: 121 LPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162 >gi|256842428|ref|ZP_05547931.1| ribonuclease III [Parabacteroides sp. D13] gi|262384660|ref|ZP_06077793.1| ribonuclease III [Bacteroides sp. 2_1_33B] gi|256736035|gb|EEU49366.1| ribonuclease III [Parabacteroides sp. D13] gi|262293641|gb|EEY81576.1| ribonuclease III [Bacteroides sp. 2_1_33B] Length = 280 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 13/226 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L K +G+ N + E+AL H S S + + ERLEFLGD IL ++ +++ Sbjct: 24 YLSLSKILGFYPDNLQIYEQALLHKSSSVETGDGKWLNNERLEFLGDGILDAAVADIVYK 83 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + +EG L+ + +V ET ++VA +L L + S+ + S + + +E+ Sbjct: 84 RYPNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYSTK----INSHNNHMYGNALEA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178 LI A+YLD G +V F+ ++ + R + K+ L EW+ ++ + + Sbjct: 140 LIGAIYLDQGYDVCYKFIRDVMIEKYIDVDMLVRKEINFKSNLIEWSQKN-KISISFDLI 198 Query: 179 FR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + D +P F +++ G G+ SK+ ++Q A+ +KR Sbjct: 199 ESFTDHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKRL 244 >gi|299142079|ref|ZP_07035213.1| ribonuclease 3 [Prevotella oris C735] gi|298576541|gb|EFI48413.1| ribonuclease 3 [Prevotella oris C735] Length = 363 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 110/227 (48%), Gaps = 15/227 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 YS+L +G+ N S + AL H SI + + ERLEFLGD IL ++ +++ Sbjct: 20 YSSLYAILGFYPRNISYYKLALMHKSIMRRNAKGKPVNNERLEFLGDAILDAIVGDIVYQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV +T +++A EL ++ I +S+ + + + E+ Sbjct: 80 HFPGKREGFLTNTRSKLVQRDTLNKLANELGISKLI-LSNGRSSS---HNSYMGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G + F+ + + K + K++L EW+ V ++++ Sbjct: 136 LVGAVYLDRGYDACMNFMQHRILTQMINIDKVAYKEVNFKSKLIEWSQKN-RVKLDFEIL 194 Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G D + P F V I G+ G+ SK+ ++Q+A L++ Sbjct: 195 -EQGKDKNGSPIFNYKVVIEGIDGCDGVGYSKKESQQLACKLTLEQL 240 >gi|332664519|ref|YP_004447307.1| ribonuclease 3 [Haliscomenobacter hydrossis DSM 1100] gi|332333333|gb|AEE50434.1| Ribonuclease 3 [Haliscomenobacter hydrossis DSM 1100] Length = 248 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 114/227 (50%), Gaps = 14/227 (6%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLLFNH 62 L+ +GY AN + + A +H S S+S + + ERLE+LGD +LG +++ LF Sbjct: 21 KLKPLLGYTPANLGIFKLAFSHKSTSNSGDKAYPMQNNERLEYLGDAVLGTIVAEYLFKK 80 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + + EG L+ + LV ++ +++ +++L + +S + S+ + VE+L Sbjct: 81 YPDSNEGFLTKMRSKLVKRKSLNRIGDKMELE--LLLS---EYNTTRLSRSMLGNAVEAL 135 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTF 179 + A+YLD G FV + ++ + + R + K++L EW K G YK+ Sbjct: 136 VGAVYLDRGYASTKIFVINHMLRKYVNIHELERLDDNYKSQLLEWCQ-KSGKNVTYKLLA 194 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 R + RF V V I+ A D +K++AEQ+A+ + + GI Sbjct: 195 RYKFEKRDRFKVAVMINNKRVATADDFNKKSAEQMASEKAMIALGIL 241 >gi|87117463|gb|ABD20025.1| Rnc [Shigella dysenteriae] Length = 178 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 3/162 (1%) Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +I+ L++ F EG++S +LV T +++ARE +L +R+ K Sbjct: 1 SYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKF 169 SI AD VE+LI ++LD I+ + +++ R + G ++D KT LQE+ + Sbjct: 61 ESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 P Y V G HD FT+ ++SGL P G S+R Sbjct: 121 LPLPTYMVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162 >gi|312131056|ref|YP_003998396.1| rnase iii [Leadbetterella byssophila DSM 17132] gi|311907602|gb|ADQ18043.1| RNAse III [Leadbetterella byssophila DSM 17132] Length = 242 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 17/222 (7%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTLLFNH 62 +E +G +N L + A H+S S ++ES ERLEFLGD +LGL++ LF Sbjct: 19 AIELIVGAKPSNPLLYQLAFRHTSASKESMFKGFRESNERLEFLGDAVLGLIVGEYLFKK 78 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF--MTSIQADVVE 120 + EG L+ + +V+ E+ + V R L L + I D TS+ D +E Sbjct: 79 YPFKNEGFLTEIRSRIVNRESLNNVGRRLGLENLI------ESDGARNFQRTSLLGDAME 132 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKV 177 +LI A+YLD G + FV + + K+ + WA ++ E+ + Sbjct: 133 ALIGAIYLDKGYKFTQKFVVSKLLSNHFDLDEVISNNTNYKSSILSWAQSEGKK-VEFVI 191 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 G +H F V + G + G +K+ AEQ A+ Sbjct: 192 VEEKGKNHSREFVAQVLVDGEIISNGNGWNKKKAEQDASRRA 233 >gi|150009420|ref|YP_001304163.1| ribonuclease III [Parabacteroides distasonis ATCC 8503] gi|298377793|ref|ZP_06987743.1| ribonuclease III [Bacteroides sp. 3_1_19] gi|149937844|gb|ABR44541.1| ribonuclease III [Parabacteroides distasonis ATCC 8503] gi|298265239|gb|EFI06902.1| ribonuclease III [Bacteroides sp. 3_1_19] Length = 280 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 13/226 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L K +G+ N + E+AL H S S + + ERLEFLGD IL ++ +++ Sbjct: 24 YLSLSKILGFYPDNLQIYEQALLHKSSSVETGDGKWLNNERLEFLGDGILDAAVADIVYK 83 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + +EG L+ + +V ET ++VA +L L + S+ + S + + +E+ Sbjct: 84 RYPNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYSTK----INSHNNHMYGNALEA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178 LI A+YLD G +V F+ ++ + R + K+ L EW+ ++ + + Sbjct: 140 LIGAIYLDQGYDVCYKFIRDVMIEKYIDVDMLVRKEINFKSNLIEWSQKN-KISISFDLI 198 Query: 179 FR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + D +P F +++ G G+ SK+ ++Q A+ +KR Sbjct: 199 ESFTDHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKRL 244 >gi|254233016|ref|ZP_04926343.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis C] gi|124602075|gb|EAY61085.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis C] Length = 198 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 83/171 (48%), Gaps = 6/171 (3%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRV 99 +EFLGD +LGL I+ LF+ EG+L+ S+V+ + + VAR L L + + Sbjct: 1 MEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLL 60 Query: 100 SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDA 157 + +SI AD +ESL+ A+YL G+E A + + + + D Sbjct: 61 GRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDW 120 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 KT LQE A+ P Y VT +GPDHD FT VV + G+ SK Sbjct: 121 KTSLQELTAARGLGAPSYLVTS-TGPDHDKEFTAVVVVMDSEYGSGVGRSK 170 >gi|319900438|ref|YP_004160166.1| RNAse III [Bacteroides helcogenes P 36-108] gi|319415469|gb|ADV42580.1| RNAse III [Bacteroides helcogenes P 36-108] Length = 290 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 112/226 (49%), Gaps = 13/226 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 Y + +G+ N + ++AL H SIS ++ + ERLEFLGD IL ++ +++ Sbjct: 19 SYLCFYEILGFFPRNIQIYQQALLHKSISIRSEKGRPLNNERLEFLGDAILDAIVGDIVY 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 HF+ +EG L+ + +V ET +++A E+ L ++ S + + + E Sbjct: 79 KHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKY----SSRSSSHNSYMYGNAFE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKV 177 + + A+YLD G + F+++ + + K R + K++L EW+ + +++ Sbjct: 135 AFVGAIYLDQGYDRCKWFMEEKIFKHYIDLDKMSRKEVNFKSKLIEWSQKN-KMEVSFEL 193 Query: 178 TFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + D++P F + I G++ G SK+ ++Q AA L++ Sbjct: 194 IKQLLDKDYNPMFHTEIRIEGVSAGTGTGYSKKESQQNAAQIALRK 239 >gi|212692274|ref|ZP_03300402.1| hypothetical protein BACDOR_01770 [Bacteroides dorei DSM 17855] gi|237726085|ref|ZP_04556566.1| ribonuclease 3 [Bacteroides sp. D4] gi|212665151|gb|EEB25723.1| hypothetical protein BACDOR_01770 [Bacteroides dorei DSM 17855] gi|229435893|gb|EEO45970.1| ribonuclease 3 [Bacteroides dorei 5_1_36/D4] Length = 308 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 113/227 (49%), Gaps = 13/227 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 Y K +G+ + S+ E+AL H S+S ++ + ERLEFLGD IL +++ ++ Sbjct: 18 ESYFRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIV 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F+ +EG L+ + +V ET +++A E+ L I+ ++ S + + + Sbjct: 78 YKRFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTA----RQSSHNSYMCGNAF 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+L+ A+YLD G F++ + K R + K++L EW+ ++ Sbjct: 134 EALVGAIYLDRGYRACKYFMEHRIIGSYINLEKISRKEVNFKSKLIEWSQKN-RFEVTFE 192 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + +S ++P F V + G++ +G SK+ ++Q+AA L + Sbjct: 193 LITQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGK 239 >gi|265752863|ref|ZP_06088432.1| ribonuclease 3 [Bacteroides sp. 3_1_33FAA] gi|263236049|gb|EEZ21544.1| ribonuclease 3 [Bacteroides sp. 3_1_33FAA] Length = 308 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 113/227 (49%), Gaps = 13/227 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 Y K +G+ + S+ E+AL H S+S ++ + ERLEFLGD IL +++ ++ Sbjct: 18 ESYFRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIV 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F+ +EG L+ + +V ET +++A E+ L I+ ++ S + + + Sbjct: 78 YKRFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTA----RQSSHNSYMCGNAF 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176 E+L+ A+YLD G F++ + K R + K++L EW+ ++ Sbjct: 134 EALVGAIYLDRGYRACKYFMEHRIIGSYINLEKISRKEVNFKSKLIEWSQKN-RFEVTFE 192 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + +S ++P F V + G++ +G SK+ ++Q+AA L + Sbjct: 193 LITQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGK 239 >gi|78183763|ref|YP_376197.1| ribonuclease III [Synechococcus sp. CC9902] gi|78168057|gb|ABB25154.1| RNAse III [Synechococcus sp. CC9902] Length = 249 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 110/228 (48%), Gaps = 12/228 (5%) Query: 5 RYSTLEKRIGYAFAN----RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + L + IG N SL+++AL H S S +++ERLEFLGD +L L + + Sbjct: 8 KLLELLQTIGLQELNSSKLLSLVDEALIHVSAGRS--KNFERLEFLGDAVLRLAATEFID 65 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + G S LVS +Q+ +L L SF+ + D + T +QAD E Sbjct: 66 QQYPNLPVGRCSSLRAQLVSDRWLAQLGEQLQLESFLVLGPKALGDAAAQAT-LQADATE 124 Query: 121 SLIAALYLDGG--IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 +LI A+Y G +E ++ +W+Q + + + KT LQEW+ A+ P Y Sbjct: 125 ALIGAIYSGSGNNLEPIHHWLTPHWQQTTADVLARPHLFNGKTMLQEWSQAEGLGLPNYT 184 Query: 177 VTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T +S DP RF VE+ A G S++ AEQ AA E ++R Sbjct: 185 TTEQSSRHGDPERFKSRVEVGSRLSANGFGRSRKEAEQNAATEAVQRL 232 >gi|323451297|gb|EGB07175.1| hypothetical protein AURANDRAFT_6264 [Aureococcus anophagefferens] Length = 227 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 75/201 (37%), Positives = 103/201 (51%), Gaps = 7/201 (3%) Query: 24 EKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 E ALTH S +H+ +ERLEFLGDR+LGL+++ L +H+ EGE +R + LV E Sbjct: 19 EAALTHPSTGAHASTGRFERLEFLGDRVLGLVVAEWLHDHYPDEDEGESQIRHSGLVRTE 78 Query: 83 TCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 VA L L +R S L + ++ AD +E+++ A+++DGG + V K Sbjct: 79 ALVAVAGGLRLDGHVRAKSHGLWVSRSNSNDTMVADALEAIVGAVFVDGGYAASKRVVLK 138 Query: 142 YWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL- 198 W K+ RD KT LQE A P Y+ ++GPDHDP TV Sbjct: 139 AWAPLLAKADATPPLRDPKTRLQEHAQKHKRPLPTYETIRKTGPDHDPTITVQAHYGDRT 198 Query: 199 --APAQGMDCSKRAAEQVAAA 217 A A+GM SKRAA AA Sbjct: 199 ANATAKGMHPSKRAASMAAAK 219 >gi|291618446|ref|YP_003521188.1| Rnc [Pantoea ananatis LMG 20103] gi|291153476|gb|ADD78060.1| Rnc [Pantoea ananatis LMG 20103] Length = 176 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 3/160 (1%) Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +I+ L++ F EG++S +LV T +++ARE DL +R+ K S Sbjct: 1 MIANALYHRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRES 60 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGV 171 I AD VE+LI ++LD I+ + +++ R + G ++D KT LQE+ + Sbjct: 61 ILADTVEALIGGVFLDSDIQTVEKLILDWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 120 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 P Y V G HD FT+ ++SG+ P G+ S+R Sbjct: 121 LPSYLVVQVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 160 >gi|125584735|gb|EAZ25399.1| hypothetical protein OsJ_09217 [Oryza sativa Japonica Group] Length = 1883 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 102/244 (41%), Gaps = 30/244 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ + TL+ +G F N+ LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1533 MRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1592 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111 + G L+ + V+ E ++VA + L +R S + Sbjct: 1593 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELL 1652 Query: 112 --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 + D+VES+ A++LD G + + + V + + Sbjct: 1653 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMH 1712 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 ELQE + EYK R+G TV V + G+ + K+ A+++AA Sbjct: 1713 PVRELQERCQQQAEGL-EYKA-SRAGN----IATVEVFVDGVQIGVAQNPQKKMAQKLAA 1766 Query: 217 AEVL 220 L Sbjct: 1767 RNAL 1770 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 63/191 (32%), Gaps = 59/191 (30%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S + YER E LGD L ++S LF + Sbjct: 1323 QLKDIIDYPVPATKIL-EALTAASCQETL--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1379 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------------------- 101 EG+L+ +VS Q A L S+I+ Sbjct: 1380 EGQLTRMRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSI 1439 Query: 102 -DLRKDVCS----------------------------FMTSIQADVVESLIAALYLDGGI 132 D C + ADVVE+LI Y+ GG Sbjct: 1440 FDEESTGCELQKESYDDYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYVAGG- 1498 Query: 133 EVAGTFVDKYW 143 ++A + K+ Sbjct: 1499 KIAANHLMKWI 1509 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214 L + + P+Y+ GP H RF V ++ + + S + A+ Sbjct: 1802 LNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDS 1861 Query: 215 AAAEVLK 221 AA +L+ Sbjct: 1862 AAVLLLE 1868 >gi|75330224|sp|Q8LMR2|DCL1_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 1; AltName: Full=Dicer-like protein 1; Short=OsDCL1 gi|21426125|gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group] gi|108705906|gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza sativa Japonica Group] Length = 1883 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 102/244 (41%), Gaps = 30/244 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ + TL+ +G F N+ LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1533 MRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1592 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111 + G L+ + V+ E ++VA + L +R S + Sbjct: 1593 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELL 1652 Query: 112 --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 + D+VES+ A++LD G + + + V + + Sbjct: 1653 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMH 1712 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 ELQE + EYK R+G TV V + G+ + K+ A+++AA Sbjct: 1713 PVRELQERCQQQAEGL-EYKA-SRAGN----IATVEVFVDGVQIGVAQNPQKKMAQKLAA 1766 Query: 217 AEVL 220 L Sbjct: 1767 RNAL 1770 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 63/191 (32%), Gaps = 59/191 (30%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S + YER E LGD L ++S LF + Sbjct: 1323 QLKDIIDYPVPATKIL-EALTAASCQETL--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1379 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------------------- 101 EG+L+ +VS Q A L S+I+ Sbjct: 1380 EGQLTRMRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSI 1439 Query: 102 -DLRKDVCS----------------------------FMTSIQADVVESLIAALYLDGGI 132 D C + ADVVE+LI Y+ GG Sbjct: 1440 FDEESTGCELQKESYDDYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYVAGG- 1498 Query: 133 EVAGTFVDKYW 143 ++A + K+ Sbjct: 1499 KIAANHLMKWI 1509 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214 L + + P+Y+ GP H RF V ++ + + S + A+ Sbjct: 1802 LNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDS 1861 Query: 215 AAAEVLK 221 AA +L+ Sbjct: 1862 AAVLLLE 1868 >gi|225453660|ref|XP_002268369.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1971 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 68/244 (27%), Positives = 106/244 (43%), Gaps = 30/244 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + ++ + TLE + F NR LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1627 LRSVNFDTLEGALNIKFNNRGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1686 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFM-------- 111 + G L+ + V+ E ++VA + L +R S L K + F+ Sbjct: 1687 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHIHLRHGSSALEKQIRDFVKEVQDELS 1746 Query: 112 --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 + D+VES+ A++LD G + A + V + + Sbjct: 1747 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMH 1806 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 ELQE + EYK T RSG TV V I G+ + K+ A+++AA Sbjct: 1807 PVRELQERCQQQAEGL-EYKAT-RSGN----LATVEVFIDGVQIGIAQNPQKKMAQKLAA 1860 Query: 217 AEVL 220 L Sbjct: 1861 RNAL 1864 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 63/191 (32%), Gaps = 61/191 (31%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 1413 QLKDVINYPVPAAKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1469 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFI------------------------------ 97 EG+L+ +VS Q A L S+I Sbjct: 1470 EGQLTRMRQQMVSNMVLYQSALCKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKETESSL 1529 Query: 98 ---------------RVSSD----------LRKDVCSFM---TSIQADVVESLIAALYLD 129 R L D S+ + ADVVE+LI Y++ Sbjct: 1530 FDHERPFSETAPGNDRHGDGYDDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVE 1589 Query: 130 GGIEVAGTFVD 140 GG A + Sbjct: 1590 GGKNAANHLMK 1600 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 6/72 (8%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214 L + + P Y+ GP H RFT V ++ + + S + A+ Sbjct: 1898 LNDICLRRNWPMPVYRCVNEGGPAHAKRFTFAVRVNTNDKGWTDECIGEPMPSVKKAKDS 1957 Query: 215 AAAEVLKREGIW 226 AA +L+ W Sbjct: 1958 AAVLLLELLNKW 1969 >gi|125542181|gb|EAY88320.1| hypothetical protein OsI_09779 [Oryza sativa Indica Group] Length = 1883 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 102/244 (41%), Gaps = 30/244 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ + TL+ +G F N+ LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1533 MRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1592 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111 + G L+ + V+ E ++VA + L +R S + Sbjct: 1593 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELL 1652 Query: 112 --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 + D+VES+ A++LD G + + + V + + Sbjct: 1653 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMH 1712 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 ELQE + EYK R+G TV V + G+ + K+ A+++AA Sbjct: 1713 PVRELQERCQQQAEGL-EYKA-SRAGN----IATVEVFVDGVQIGVAQNPQKKMAQKLAA 1766 Query: 217 AEVL 220 L Sbjct: 1767 RNAL 1770 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 64/191 (33%), Gaps = 59/191 (30%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 1323 QLKDIIDYPVPATKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1379 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------------------- 101 EG+L+ +VS Q A L S+I+ Sbjct: 1380 EGQLTRMRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSI 1439 Query: 102 -DLRKDVCS----------------------------FMTSIQADVVESLIAALYLDGGI 132 D C + ADVVE+LI Y+ GG Sbjct: 1440 FDEESTGCELQKESYDDYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYVAGG- 1498 Query: 133 EVAGTFVDKYW 143 ++A + K+ Sbjct: 1499 KIAANHLMKWI 1509 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214 L + + P+Y+ GP H RF V ++ + + S + A+ Sbjct: 1802 LNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDS 1861 Query: 215 AAAEVLK 221 AA +L+ Sbjct: 1862 AAVLLLE 1868 >gi|87117514|gb|ABD20059.1| Rnc [Shigella boydii] Length = 178 Score = 182 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +I+ L++ F EG++S +LV T +++ARE +L +R+ K Sbjct: 1 SYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKF 169 SI AD VE+LI ++LD I + +++ R + G ++D KT LQE+ + Sbjct: 61 ESILADTVEALIGGVFLDSDIRTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 P Y V G HD FT+ ++SGL P G S+R Sbjct: 121 LPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162 >gi|281424694|ref|ZP_06255607.1| ribonuclease III [Prevotella oris F0302] gi|281401064|gb|EFB31895.1| ribonuclease III [Prevotella oris F0302] Length = 363 Score = 182 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 15/227 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 YS+L +G+ N S + AL H SI + + ERLEFLGD IL ++ +++ Sbjct: 20 YSSLYAILGFYPRNISYYKLALMHKSIMRRNAKGKPVNNERLEFLGDAILDAIVGDIVYQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV +T +++A EL ++ I +S+ + + + E+ Sbjct: 80 HFPGKREGFLTNTRSKLVQRDTLNKLANELGISKLI-LSNGRSSS---HNSYMGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G + F+ + + K + K++L EW+ V +++ Sbjct: 136 LVGAVYLDRGYDACMNFMQHRILTQMINIDKVAYKEVNFKSKLIEWSQKN-RVKLNFEIL 194 Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G D + P F V I G+ G+ SK+ ++Q+A L++ Sbjct: 195 -EQGKDKNGSPIFNYKVVIEGIDGCDGVGYSKKESQQLACKLTLEQL 240 >gi|282858948|ref|ZP_06268088.1| ribonuclease III [Prevotella bivia JCVIHMP010] gi|282588330|gb|EFB93495.1| ribonuclease III [Prevotella bivia JCVIHMP010] Length = 333 Score = 182 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 103/224 (45%), Gaps = 11/224 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + G + S + AL H S+S ++ + ERLEFLGD +L +++ +++ Sbjct: 20 YLSLYQITGLIPHDISYYKTALLHKSVSRRNEKGKLVNNERLEFLGDAVLDCVVADIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F + +EG L+ + LV ET ++V+ E+ + ++ + ++ + E+ Sbjct: 80 RFPNKREGFLTNTRSKLVKRETLNKVSTEMGIDKMLK----QNGHTVTHNCNVAGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ ALYLD G + F+ + K + K++L EW +V Sbjct: 136 LVGALYLDHGYDACMNFMRNRVFGHLVNVEKMAYREMNYKSKLIEWTQKNKVTVIFDEVN 195 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + +P F V I + +G +K+ ++Q AA + +R Sbjct: 196 TSTDENGNPVFLAQVIIGNVRCEEGKGFTKKESQQNAAKQTYRR 239 >gi|157953758|ref|YP_001498649.1| hypothetical protein AR158_C568R [Paramecium bursaria Chlorella virus AR158] gi|156068406|gb|ABU44113.1| hypothetical protein AR158_C568R [Paramecium bursaria Chlorella virus AR158] Length = 268 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 98/222 (44%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +E IG + + A S + + +YER+EF+GD +LG +I+ L+++F Sbjct: 45 NDIEYLIGMPIIDFEYYKTAF---SYNAIVEGESTYERMEFVGDSVLGFIIARYLYDNFP 101 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS VS + S +A + L +F+ + + I DV E+L+ Sbjct: 102 GKDEGFLSRLRTKFVSGKFLSSIALRMGLHNFVIMHQKGLYRGWNTNPRILEDVFEALMG 161 Query: 125 ALYLDGGIEVAGT-FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+Y D GI A F+ K + + + K L + PE+ F G Sbjct: 162 AIYFDLGINAAKQFFMSTLVKYADIHNLMIDTNYKDRLLKHTRKIELQRPEFVSVFEKGG 221 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +P F V V I+G + G S++ AEQ A+ L GI Sbjct: 222 A-NPSFVVDVVINGQKISTGTGKSRKDAEQNASKLALYSMGI 262 >gi|157952932|ref|YP_001497824.1| hypothetical protein NY2A_B628R [Paramecium bursaria Chlorella virus NY2A] gi|155123159|gb|ABT15027.1| hypothetical protein NY2A_B628R [Paramecium bursaria Chlorella virus NY2A] Length = 268 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 98/222 (44%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +E IG + + A S + + +YER+EF+GD +LG +I+ L+++F Sbjct: 45 NDIEYLIGMPIIDFEYYKTAF---SYNAIVEGESTYERMEFVGDSVLGFIIARYLYDNFP 101 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS VS + S +A + L +F+ + + I DV E+L+ Sbjct: 102 GKDEGFLSRLRTKFVSGKFLSSIALRMGLHNFVIMHQKGLYRGWNTNPRILEDVFEALMG 161 Query: 125 ALYLDGGIEVAGT-FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+Y D GI A F+ K + + + K L + PE+ F G Sbjct: 162 AIYFDLGINAAKQFFMSTLVKYADIHNLMIDTNYKDRLLKHTRKIELQRPEFVSVFEKGG 221 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +P F V V I+G + G S++ AEQ A+ L GI Sbjct: 222 A-NPSFVVDVVINGQKISTGTGKSRKDAEQNASKLALYSMGI 262 >gi|313157061|gb|EFR56491.1| ribonuclease III [Alistipes sp. HGB5] Length = 232 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 21/215 (9%) Query: 14 GYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 G+ N L + AL H S S ++ + ERLEFLGD ++ + S LF + EG Sbjct: 3 GFIPNNIELYKLALIHKSASLVLEDGRAINNERLEFLGDAVIEAVTSDYLFIEYPDRDEG 62 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 L+ + +VS ++ + +A + L + +S+ I D E++I A+YLD Sbjct: 63 FLTQLRSKIVSRQSLNVLAVNIGLDRHV-ISNG---STSVTQKHIYGDAFEAMIGAVYLD 118 Query: 130 GGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD-- 184 G E + R L + D K+ L EW K+ FR+G D Sbjct: 119 QGYEFVNRLLINRIYFRHLSLDELTESETDFKSRLIEWCQKNRH-----KIAFRTGYDKE 173 Query: 185 ---HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + P F V + G+ G SK+ AEQ AA Sbjct: 174 YSANHPVFYSTVLVDGMEVGHGSGDSKKEAEQHAA 208 >gi|332830459|gb|EGK03087.1| hypothetical protein HMPREF9455_01337 [Dysgonomonas gadei ATCC BAA-286] Length = 273 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 13/229 (5%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTL 58 Y + K +G+ N +L E+AL H S S ++ + ERLEFLGD IL +++ + Sbjct: 17 KEPYVSFCKILGFYPYNITLYEQALLHKSSSIKLKDGRWINNERLEFLGDAILDAIVADI 76 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 +F F+ KEG L+ + +V ET +++A E+ + I+ S+ + T + + Sbjct: 77 VFKEFEYKKEGFLTNMRSKIVQRETLNRLALEIGIDKLIKTST----RNTTPNTHMYGNA 132 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS---GKFRRDAKTELQEWAHAKFGVTPEY 175 +E+ I A+YLD G A FV + Q L + + K+ L EW+ + ++ + Sbjct: 133 LEAFIGAIYLDQGYRAAKRFVFERLIQEHLNIESVAELEANYKSRLIEWSQKQ-KISVSF 191 Query: 176 KVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +++ P F V I G G SK+ ++Q AA E + Sbjct: 192 DLIDSFVDENNTPIFKTAVIIMGEQAGLGTGYSKKESQQKAAKEAYNKL 240 >gi|198275414|ref|ZP_03207945.1| hypothetical protein BACPLE_01577 [Bacteroides plebeius DSM 17135] gi|198271750|gb|EDY96020.1| hypothetical protein BACPLE_01577 [Bacteroides plebeius DSM 17135] Length = 339 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 59/228 (25%), Positives = 108/228 (47%), Gaps = 12/228 (5%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTL 58 Y K +G+ N + ++AL H S S + + ERLEFLGD IL +++ + Sbjct: 16 DKESYLCFYKILGFYPRNIEIYQQALLHKSSSVKAKGRLLNNERLEFLGDAILDAVVADI 75 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 ++ F+ +EG L+ + +V ET +Q+A ++ L I+ ++ S + + + Sbjct: 76 VYKRFEGKREGFLTNTRSKIVQRETLNQIAVKIGLDKLIKYTT----RQSSHNSYMCGNA 131 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEY 175 E+L+ A+YLD G F+++ + L K R + K++L EW E+ Sbjct: 132 FEALVGAIYLDRGYATCKFFMEERIIKPYLNLEKLSRKEVNFKSKLIEWGQKN-KFLIEF 190 Query: 176 KVTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + ++ +P F V + + QG SK+ ++Q AA E L + Sbjct: 191 NLLEQTVDEQQNPVFETQVVVEQIPAGQGKGYSKKESQQEAAHETLNK 238 >gi|301167246|emb|CBW26828.1| Ribonuclease III (RNase III) [Bacteriovorax marinus SJ] Length = 261 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFD 64 L++ I + F N +LL +ALTHSS H ++SYERLEFLGD +L L+I+ LL F Sbjct: 28 LQRNISHKFKNMALLYEALTHSSFGHECFGDSKKSYERLEFLGDSVLDLIITDLLQEKFP 87 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+LS SLV+ + ++A L++ + V K + +SI +DV E+++ Sbjct: 88 AMVEGKLSKLRASLVNEVSLKELASSLEIERAVLVGKGELKAQGNLKSSILSDVFEAVLG 147 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--------RRDAKTELQEWAHAKFGVTPEYK 176 A+Y D +EV+ + SG+ D+K+ LQE + F P+Y Sbjct: 148 AIYKDSSLEVSKKSFISIIENYEKLSGQIYLDEKRLQEFDSKSRLQEMTMSLFKTLPKYS 207 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 S + F V + +G SK+ EQ A ++ + Sbjct: 208 AKELS----NGNFEVEASVLDKFLEKGEFSSKKKGEQKLAKNIIIK 249 >gi|256077671|ref|XP_002575125.1| ribonuclease III [Schistosoma mansoni] gi|238660353|emb|CAZ31358.1| ribonuclease III, putative [Schistosoma mansoni] Length = 1531 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 105/228 (46%), Gaps = 11/228 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHS--SISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + TLE +G F + +L +A+T + +RLEFLGD +L + + LF H Sbjct: 1061 KLCTLEDTLGIKFKHLRVLARAMTIRKTGFNFYTLGDNQRLEFLGDSLLKYVSTDYLFRH 1120 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI--QADVVE 120 F EG LS+ NSLV+ T + V EL L ++ + S ++ +AD++E Sbjct: 1121 FPRHHEGHLSLLKNSLVNKYTQASVCSELGLEHYVIHRNKNDNCNNSQNQNVKYRADLLE 1180 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAH--AKFGVTPE-- 174 + I AL++D + F + R ++ + DAK++LQ+ PE Sbjct: 1181 AFIGALFVDKDLAWVERFCQICFWPRLVEFILKQEWNDAKSKLQQCCLTFRSLNEDPEIA 1240 Query: 175 -YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YKV SGP + + V V G A G S + A+ AA + L+ Sbjct: 1241 HYKVLEHSGPTNQRVYRVGVYFRGQRLATGEGRSVQQAQMEAAKKALE 1288 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 56/190 (29%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYE-------------------RLE- 44 +LE R+GY F ++SLL ++LTH S + + + +LE Sbjct: 828 SLESLENRLGYTFNDKSLLHQSLTHPSYRRTNFGTNQDHFQNSLVSCGPRILEYGDKLEL 887 Query: 45 ------------------------------------FLGDRILGLLISTLLFNHFDSAKE 68 FLGD ++ ++ S LF F E Sbjct: 888 YKAWRKKGLTKMIQVMSFLPKMHEERSNIYGNERLEFLGDAVVEVISSIHLFFMFPELSE 947 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L ++V + +++A L + ++ + + S ++D E+L+AA+ L Sbjct: 948 GHLDAYRQAIVQNQHLAELAVRLGIHKYLLYTHSVDFCYDSTFIYARSDAFEALMAAITL 1007 Query: 129 DGGIEVAGTF 138 D G+++ Sbjct: 1008 DAGLDIVDRI 1017 >gi|256077669|ref|XP_002575124.1| ribonuclease III [Schistosoma mansoni] gi|238660352|emb|CAZ31357.1| ribonuclease III, putative [Schistosoma mansoni] Length = 1577 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 105/228 (46%), Gaps = 11/228 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHS--SISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + TLE +G F + +L +A+T + +RLEFLGD +L + + LF H Sbjct: 1107 KLCTLEDTLGIKFKHLRVLARAMTIRKTGFNFYTLGDNQRLEFLGDSLLKYVSTDYLFRH 1166 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI--QADVVE 120 F EG LS+ NSLV+ T + V EL L ++ + S ++ +AD++E Sbjct: 1167 FPRHHEGHLSLLKNSLVNKYTQASVCSELGLEHYVIHRNKNDNCNNSQNQNVKYRADLLE 1226 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAH--AKFGVTPE-- 174 + I AL++D + F + R ++ + DAK++LQ+ PE Sbjct: 1227 AFIGALFVDKDLAWVERFCQICFWPRLVEFILKQEWNDAKSKLQQCCLTFRSLNEDPEIA 1286 Query: 175 -YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YKV SGP + + V V G A G S + A+ AA + L+ Sbjct: 1287 HYKVLEHSGPTNQRVYRVGVYFRGQRLATGEGRSVQQAQMEAAKKALE 1334 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 56/190 (29%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYE-------------------RLE- 44 +LE R+GY F ++SLL ++LTH S + + + +LE Sbjct: 874 SLESLENRLGYTFNDKSLLHQSLTHPSYRRTNFGTNQDHFQNSLVSCGPRILEYGDKLEL 933 Query: 45 ------------------------------------FLGDRILGLLISTLLFNHFDSAKE 68 FLGD ++ ++ S LF F E Sbjct: 934 YKAWRKKGLTKMIQVMSFLPKMHEERSNIYGNERLEFLGDAVVEVISSIHLFFMFPELSE 993 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L ++V + +++A L + ++ + + S ++D E+L+AA+ L Sbjct: 994 GHLDAYRQAIVQNQHLAELAVRLGIHKYLLYTHSVDFCYDSTFIYARSDAFEALMAAITL 1053 Query: 129 DGGIEVAGTF 138 D G+++ Sbjct: 1054 DAGLDIVDRI 1063 >gi|323343670|ref|ZP_08083897.1| ribonuclease 3 [Prevotella oralis ATCC 33269] gi|323095489|gb|EFZ38063.1| ribonuclease 3 [Prevotella oralis ATCC 33269] Length = 361 Score = 181 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 114/226 (50%), Gaps = 13/226 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 YS+L + IG+ N S + AL H SI + + ERLEFLGD IL ++ ++++ Sbjct: 22 YSSLYRIIGFYPRNISYYKLALMHKSIMRRNSKGKPVNNERLEFLGDAILDAIVGHIVYD 81 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV +T +++A+E+ + I +S+ + + + E+ Sbjct: 82 HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGINRLI-LSNGRSSS---HNSYMGGNAFEA 137 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G + F++K + + K + K++L EW+ V E+K+ Sbjct: 138 LVGAIYLDRGYDACMRFMNKRILAQMINIDKVAYKEVNFKSKLIEWSQKN-RVRMEFKML 196 Query: 179 FRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + P F +V + G+ G SK+ ++Q+A+ L+R Sbjct: 197 DQKKDKNGSPMFQYMVCLEGVDGCSGTGYSKKESQQLASKLTLERL 242 >gi|254431519|ref|ZP_05045222.1| ribonuclease III [Cyanobium sp. PCC 7001] gi|197625972|gb|EDY38531.1| ribonuclease III [Cyanobium sp. PCC 7001] Length = 245 Score = 181 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 68/211 (32%), Positives = 105/211 (49%), Gaps = 12/211 (5%) Query: 19 NRSLL---EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 + +LL E+ALTH+S + ++ERLEFLGD +L L S L H G S Sbjct: 29 DPALLAPIEEALTHTSA--RQRGNHERLEFLGDAVLRLAASEYLHRHHPQLGVGSQSALR 86 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG--IE 133 + LVS +++A L + R+ R D + +++A++ E+LI A+Y G +E Sbjct: 87 SQLVSDRWLAELADSCGLETVWRIGPMARGDRA-GIATVRAELCEALIGAVYRCWGDSLE 145 Query: 134 VAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFT 190 T++ +W+Q + L + R + K+ LQEW + P Y RS DP RF+ Sbjct: 146 PVLTWLTPHWQQASQELLADPDRHNWKSALQEWTQGQGLGLPSYSCEERSTLHADPRRFS 205 Query: 191 VVVEIS-GLAPAQGMDCSKRAAEQVAAAEVL 220 + + G G S+RAAEQ AA + L Sbjct: 206 CRLTLGAGNESWDGWGPSRRAAEQDAARQAL 236 >gi|290508248|ref|ZP_06547619.1| ribonuclease III [Klebsiella sp. 1_1_55] gi|289777642|gb|EFD85639.1| ribonuclease III [Klebsiella sp. 1_1_55] Length = 176 Score = 181 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 3/160 (1%) Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +I+ L++ F EG++S +LV T +++ARE +L +R+ K S Sbjct: 1 MIANALYHRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRES 60 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGV 171 I AD VE+LI ++LD I+ + +++ R + G ++D KT LQE+ + Sbjct: 61 ILADTVEALIGGVFLDSDIQNVERLILSWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 120 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 P Y V G HD FT+ ++SGL P G S+R Sbjct: 121 LPSYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 160 >gi|330996547|ref|ZP_08320429.1| ribonuclease III [Paraprevotella xylaniphila YIT 11841] gi|329573103|gb|EGG54722.1| ribonuclease III [Paraprevotella xylaniphila YIT 11841] Length = 297 Score = 181 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 12/222 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62 YS+ K +G+ + E+AL H S S Q + ERLEFLGD IL ++ ++F H Sbjct: 21 YSSFYKILGFYPHHIQYYEQALHHKSSSIKKQGSWINNERLEFLGDAILDAVVGDIVFRH 80 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ + +V ET +++A E+ L I + + + + E++ Sbjct: 81 FKGKHEGFLTNTRSKIVQRETLNKLAVEIGLDKLII----SSTHSSTHNSYMCGNAFEAM 136 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTF 179 + A+YLD G F+ K + + K + K++L EW + V + + Sbjct: 137 VGAIYLDRGYSYCMRFIGKRIMTQLINIDKLAYKEVNFKSKLIEWGQKR-RVEITFDLID 195 Query: 180 RSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 ++ + P FT + I G+ +G SK+ ++Q+AA + L Sbjct: 196 QAQEGNSTPVFTTQITIEGVTCCKGRGYSKKESQQLAAKDTL 237 >gi|237711457|ref|ZP_04541938.1| ribonuclease III [Bacteroides sp. 9_1_42FAA] gi|229454152|gb|EEO59873.1| ribonuclease III [Bacteroides sp. 9_1_42FAA] Length = 283 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 56/218 (25%), Positives = 111/218 (50%), Gaps = 13/218 (5%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ + S+ E+AL H S+S ++ + ERLEFLGD IL +++ +++ F+ +E Sbjct: 2 LGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIVYKRFEGKRE 61 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V ET +++A E+ L I+ ++ S + + + E+L+ A+YL Sbjct: 62 GFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTA----RQSSHNSYMCGNAFEALVGAIYL 117 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRS-GPD 184 D G F++ + K R + K++L EW+ +++ +S Sbjct: 118 DRGYRACKYFMEHRIIGSYINLEKISRKEVNFKSKLIEWSQKN-RFEVTFELITQSHDQG 176 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 ++P F V + G++ +G SK+ ++Q+AA L + Sbjct: 177 YNPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGK 214 >gi|188518513|ref|ZP_03003985.1| ribonuclease III [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188997913|gb|EDU67010.1| ribonuclease III [Ureaplasma urealyticum serovar 11 str. ATCC 33695] Length = 239 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 14/233 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M ++ K+ N S+ +ALTH S ++ ++ ++Y+RLEFLGD + +IS Sbjct: 1 MDNKKFLDFLKQNRIEPKNLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNF 60 Query: 59 LF-------NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +F S EGE++ +++V +E S A++L L F+ + L +D + M Sbjct: 61 IFNYKIKDNEKMRSLDEGEMTRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARM 120 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFG 170 I D+ E+ I A+ D GI+ ++K K +++D KT QE A Sbjct: 121 EKIYEDIFEAFIGAVAQDQGIKKVSLILEKTLIKYFREGQINYQKDYKTIFQEQAQRINK 180 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 YK+ G D + V + + L G+ +++ AE +AA + + Sbjct: 181 KPIMYKLVRNEG---DKK-EVHLVWNDLIYGIGIASTRKEAEILAAKNAILKL 229 >gi|189462275|ref|ZP_03011060.1| hypothetical protein BACCOP_02961 [Bacteroides coprocola DSM 17136] gi|189431014|gb|EDU99998.1| hypothetical protein BACCOP_02961 [Bacteroides coprocola DSM 17136] Length = 314 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 13/229 (5%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 Y K +G+ N + ++AL H S S + + ERLEFLGD IL +++ Sbjct: 16 DKEPYLCFYKMLGFYPRNIEIYQQALLHKSSSIKAGKGRLLNNERLEFLGDAILDAIVAD 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +++ F+ +EG L+ + +V ET ++VA E+ L I+ ++ S + + + Sbjct: 76 IVYKKFEGKREGFLTNTRSKIVQRETLNRVAVEIGLDKLIKYTT----RQSSHNSYMCGN 131 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPE 174 E+LI A+YLD G F+++ + L K R + K++L EW+ E Sbjct: 132 AFEALIGAIYLDRGYRACKKFMEERIINQYLNLEKISRKEVNFKSKLIEWSQKNKFC-VE 190 Query: 175 YKVTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + +S D +P F + + + G SK+ ++Q AA L + Sbjct: 191 FNLIEQSLDSDQNPIFETQITVENIPAGTGKGYSKKESQQEAAHATLTK 239 >gi|294675193|ref|YP_003575809.1| ribonuclease III [Prevotella ruminicola 23] gi|294472646|gb|ADE82035.1| ribonuclease III [Prevotella ruminicola 23] Length = 342 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 116/226 (51%), Gaps = 13/226 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 +S+L + +G+ N + AL H SI + + ERLEFLGD IL + +++ Sbjct: 21 FSSLYEILGFYPHNIEYYKMALMHKSIRKRNDKGKPLNNERLEFLGDAILDAAVGYIVYR 80 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H++ +EG L+ + LVS ET ++A E+ L++ + +S+ S + ++ + E+ Sbjct: 81 HYEGKREGFLTNTRSKLVSRETLGKLATEMRLSN-LLISAG---HSTSHNSYVEGNAFEA 136 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G E F + + + K + K++L EW+ V EYK+T Sbjct: 137 LVGAIYLDRGYEACLWFFENQVLGKFIDIDKVAFKEVNFKSKLLEWSQKN-RVRLEYKLT 195 Query: 179 FRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + ++ P FT +V I G+ G SK+ A+Q A+ + L+R Sbjct: 196 KQKKDENGSPVFTYMVIIEGVNGESGSGYSKKEAQQKASKDTLQRL 241 >gi|317420155|emb|CBN82191.1| Ribonuclease 3 [Dicentrarchus labrax] Length = 1569 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 66/211 (31%), Positives = 102/211 (48%), Gaps = 10/211 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + ++ E IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1359 KLTSFEDSIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1418 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + F +++D K + T AD++ES Sbjct: 1419 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQDFA-ITNDKTKRPVALRTKTLADLLESF 1477 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1478 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1537 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K GP H +TV V G G Sbjct: 1538 KTLQTVGPSHARTYTVAVYFKGERIGCGKGP 1568 Score = 79.3 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 44/87 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 1023 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1082 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIA 124 + S + A+ E+LI Sbjct: 1083 LYAHGPDLCRESDLRHAMANCFEALIE 1109 >gi|146298900|ref|YP_001193491.1| ribonuclease III [Flavobacterium johnsoniae UW101] gi|146153318|gb|ABQ04172.1| Ribonuclease III [Flavobacterium johnsoniae UW101] Length = 246 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 105/223 (47%), Gaps = 12/223 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLL 59 + + T++K +G+ N +KA TH S + + +YERLEFLGD +L +I+ L Sbjct: 18 IFFDTIQKILGFQPINIEFYKKAFTHRSSNKLDEAGHPINYERLEFLGDAMLSAVIAAHL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 FN + EG L+ + +VS E +++ ++L+L F+ + + V F +I ++ Sbjct: 78 FNKAPNGDEGYLTKMRSKIVSREHLNELGKDLNLVRFV----ESKVPVQHFGENIHGNIF 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYK 176 ESLI A+YLD G F+ K + + K+ + EW + + Y Sbjct: 134 ESLIGAIYLDKGYSYCERFIQKRVITPYVDIARLEGKVISYKSLVIEWCQKEKRI-FHYD 192 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + +G D F V + I A+ SK+ AE+ A+ Sbjct: 193 IFEDNGIDGQRLFGVKLSIDDKVVARARATSKKKAEEKASQRA 235 >gi|13357763|ref|NP_078037.1| ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762098|ref|YP_001752286.1| ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920496|ref|ZP_02931789.1| ribonuclease III [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171920571|ref|ZP_02931835.1| ribonuclease III [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178791|ref|ZP_02964587.1| ribonuclease III [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|186701949|ref|ZP_02971588.1| ribonuclease III [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|188024220|ref|ZP_02996925.1| ribonuclease III [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188524062|ref|ZP_03004155.1| ribonuclease III [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867699|ref|ZP_03079700.1| ribonuclease III [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273484|ref|ZP_03206020.1| ribonuclease III [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554634|ref|YP_002284601.1| ribonuclease III [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550368|ref|ZP_03771317.1| ribonuclease III [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551297|ref|ZP_03772243.1| ribonuclease III [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|22654077|sp|Q9PQT8|RNC_UREPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|11263399|pir||F82919 ribonuclease III UU205 [imported] - Ureaplasma urealyticum gi|6899171|gb|AAF30612.1|AE002120_4 ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827675|gb|ACA32937.1| ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902964|gb|EDT49253.1| ribonuclease III [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171903275|gb|EDT49564.1| ribonuclease III [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209411|gb|EDU06454.1| ribonuclease III [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|186700702|gb|EDU18984.1| ribonuclease III [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|188018874|gb|EDU56914.1| ribonuclease III [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|195659811|gb|EDX53191.1| ribonuclease III [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660554|gb|EDX53810.1| ribonuclease III [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250004|gb|EDY74784.1| ribonuclease III [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209542135|gb|ACI60364.1| ribonuclease III [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379112|gb|EEH01477.1| ribonuclease III [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379522|gb|EEH01884.1| ribonuclease III [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 236 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 14/233 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M ++ K+ N S+ +ALTH S ++ ++ ++Y+RLEFLGD + +IS Sbjct: 1 MDNKKFLDFLKQNRIEPKNLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNF 60 Query: 59 LF-------NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +F S EGE++ +++V +E S A++L L F+ + L +D + M Sbjct: 61 IFNYKIKDNEKMRSLDEGEMTRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARM 120 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFG 170 I D+ E+ I A+ D GI+ ++K K +++D KT QE A Sbjct: 121 EKIYEDIFEAFIGAVAQDQGIKKVSLILEKTLIKYFREGQINYQKDYKTIFQEQAQRINK 180 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 YK+ G D + V + + L G+ +++ AE +AA + + Sbjct: 181 KPIMYKLVRNEG---DKK-EVHLVWNDLIYGIGIASTRKEAEILAAKNAILKL 229 >gi|168010516|ref|XP_001757950.1| dsRNA-specific nuclease dicer and related ribonuclease [Physcomitrella patens subsp. patens] gi|162690827|gb|EDQ77192.1| dsRNA-specific nuclease dicer and related ribonuclease [Physcomitrella patens subsp. patens] Length = 1662 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 102/244 (41%), Gaps = 30/244 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ + +LE IG+ F RSLL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1316 MLSIDFDSLEASIGHKFRKRSLLVEAITHASRPSSGVPCYQRLEFVGDAVLDYLITRFLF 1375 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111 + G L+ + V+ E ++VA + +R S + Sbjct: 1376 FKYTDLPPGRLTDLRAAAVNNENFARVAVKHSFHLHLRHGSSALETQIRNFVNDIQTELD 1435 Query: 112 --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 + D++ES+ AL+LD +E + V + Q + Sbjct: 1436 KPGVNSFGLGDFKAPKVLGDILESIAGALFLDACLETDHVWKVFEPLLQPMVTPETLPMH 1495 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 ELQE + EYK R+G TV V + G+ + K+ A+++AA Sbjct: 1496 PVRELQERCQQQAEAL-EYKA-SRAGN----VATVEVYVDGVQIGSAQNAQKKMAQKLAA 1549 Query: 217 AEVL 220 L Sbjct: 1550 RNAL 1553 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ +I Y A +L +ALT +S ++ SYER E LGD L ++S LF + Sbjct: 1095 QLKHQIDYPIAASKVL-EALTAASCQETF--SYERAELLGDAYLKWVVSRRLFLKYPCKH 1151 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A + L S+I+ Sbjct: 1152 EGQLTRMRQQIVSNSVLYQYALDKGLQSYIQ 1182 Score = 41.6 bits (97), Expect = 0.087, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 15/35 (42%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 L + + P+Y+ GP H +FT V + Sbjct: 1591 LNDLCLKRQWPMPQYRCVLEGGPAHAKKFTFSVRV 1625 >gi|311747672|ref|ZP_07721457.1| ribonuclease III [Algoriphagus sp. PR1] gi|126575659|gb|EAZ79969.1| ribonuclease III [Algoriphagus sp. PR1] Length = 250 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 9/227 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 ++++ +G N +L + ALT SS+ + S ERLEFLGD ILG +++ LF Sbjct: 27 ASIKMMMGSRPFNIALYKLALTPSSLGEETSKGFKISNERLEFLGDAILGAVVAEYLFQK 86 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG L+ + LV+ E+ + ++ L + + R + S+ D++E+ Sbjct: 87 YPYRDEGFLTETRSKLVNRESLNATGVKIGLKKILNLEIGDRNFIG--NKSLYGDILEAF 144 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + A+YLD G F+ K G + K+++ EW+ + EYK+ Sbjct: 145 LGAVYLDKGYHFTKKFILKRILLHFDLDGMITTVSNYKSKIIEWSQRENK-NIEYKILHV 203 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 G F V +EI G +QG +K+ AEQ A+ I Sbjct: 204 HGNQRFKEFIVALEIDGEEASQGKGPTKKKAEQEASKNACDELNITN 250 >gi|183508806|ref|ZP_02958264.1| ribonuclease III [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182675758|gb|EDT87663.1| ribonuclease III [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 236 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 14/233 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M ++ K+ N S+ +ALTH S ++ ++ ++Y+RLEFLGD + +IS Sbjct: 1 MDNKKFLDFLKQNRIEPKNLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNF 60 Query: 59 LF-------NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +F S EGE++ +++V +E S A++L L F+ + L +D + M Sbjct: 61 IFNYKIKDNEKMHSLDEGEMTRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARM 120 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFG 170 I D+ E+ I A+ D GI+ ++K K +++D KT QE A Sbjct: 121 EKIYEDIFEAFIGAVAQDQGIKKVSLILEKTLIKYFREGQINYQKDYKTIFQEQAQRINK 180 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 YK+ G D + V + + L G+ +++ AE +AA + + Sbjct: 181 KPIMYKLVRNEG---DKK-EVHLVWNDLIYGIGIASTRKEAEILAAKNAILKL 229 >gi|291320365|ref|YP_003515628.1| ribonuclease III [Mycoplasma agalactiae] gi|290752699|emb|CBH40673.1| Ribonuclease III (RNase III) [Mycoplasma agalactiae] Length = 226 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 10/227 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLL 59 M+++ + + ++ +A TH SS+++S ++Y+ LEFLGD IL +S +L Sbjct: 1 MNSI--ESFLNNFNIKPVSLAVYRQAFTHGSSVANSKGKNYQTLEFLGDAILQFYVSAIL 58 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 FN F +G+L++ + LV ++ +Q+A L L F+ +SS++ + AD+ Sbjct: 59 FNSFKDKNQGQLTLIRSKLVCTDSLNQIADLLKLKDFLVLSSNVVATEVLSSKKVGADIF 118 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFR-RDAKTELQEWAHAKFGVTPEYK 176 ESL+AA++LD G+ F+DK + K GK +D+KT LQE+ + T Y+ Sbjct: 119 ESLVAAIFLDQGLPKVKEFLDKTLLPLVKQYKEGKIELKDSKTRLQEYMQSFSKKTVFYQ 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + F G G+ SK AE+ AA + L + Sbjct: 179 TYQSE----NNLFKAEAIYEGNVYGSGVGKSKHEAEENAANDALNKL 221 >gi|305665924|ref|YP_003862211.1| putative ribonuclease III [Maribacter sp. HTCC2170] gi|88710699|gb|EAR02931.1| putative ribonuclease III [Maribacter sp. HTCC2170] Length = 245 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 12/216 (5%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSA 66 K +G+ N + +KA H S + ++ +YERLEFLGD +LG +IS L+N Sbjct: 24 KILGFKPKNLKIFKKAFLHRSANRKDEDGNPMNYERLEFLGDAMLGTIISKHLYNEVPDG 83 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ + +VS E +++ ++L+L F+ + R F +I +V E+L+ A+ Sbjct: 84 DEGYLTKMRSKIVSREHLNELGKDLNLIKFV----ESRIPKTHFGDNIHGNVFEALVGAI 139 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD G F+ + + + K+ + EW + + +Y V +G Sbjct: 140 YLDRGYNYCEKFIHERVILPYVDIEQLEGKVISYKSLVIEWCQKQKK-SFKYNVYEDTGK 198 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 D F V + I A+ SK+ AE+ A+ Sbjct: 199 DVLKHFAVKLSIGDNVVAKARATSKKKAEERASKRA 234 >gi|288928881|ref|ZP_06422727.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella sp. oral taxon 317 str. F0108] gi|288329865|gb|EFC68450.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella sp. oral taxon 317 str. F0108] Length = 459 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 114/227 (50%), Gaps = 15/227 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 YS+L + +G+ N S + AL H S+ ++ + ERLEFLGD IL ++ +++ Sbjct: 20 YSSLFEILGFYPRNISYYKLALMHKSVMRRGANGKPVNNERLEFLGDAILDAIVGDIVYR 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV ET +++A+E+ ++ I +SS S + + + E+ Sbjct: 80 HFPGKREGFLTNTRSKLVQRETLNRLAQEMGISRLI-LSSG---HTSSHNSYMGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G F++K + + K + K++L EW+ V ++ + Sbjct: 136 LVGAIYLDRGYSSCMRFMEKRILAKMINIDKVAYKEVNFKSKLIEWSQKN-RVKLDF-IV 193 Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G D + P F V + G+ G SK+ ++Q+A+ L+R Sbjct: 194 KEQGKDKNGSPFFLFCVHLEGVEGCNGRGYSKKESQQLASKLTLERL 240 >gi|255548081|ref|XP_002515097.1| dicer-1, putative [Ricinus communis] gi|223545577|gb|EEF47081.1| dicer-1, putative [Ricinus communis] Length = 1543 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 105/244 (43%), Gaps = 30/244 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + ++ + LE + F +R LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1199 LRSIDFDALEGALNIKFQDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1258 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFM-------- 111 + + G L+ + V+ E ++VA L +R S L K + F+ Sbjct: 1259 FTYTNLPPGRLTDLRAAAVNNENFARVAVNHKLHVHLRHGSSALEKQIRDFVREVQDELS 1318 Query: 112 --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 + D+VES+ A++LD G + A + V + + Sbjct: 1319 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMH 1378 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 ELQE + EYK T RSG TV V I G+ + K+ A+++AA Sbjct: 1379 PVRELQERCQQQAEGL-EYKAT-RSGN----LATVEVFIDGVQVGVAQNPQKKMAQKLAA 1432 Query: 217 AEVL 220 L Sbjct: 1433 RNAL 1436 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y+ +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 985 QLKDIIHYSVPALKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1041 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 1042 EGQLTRMRQQMVSNMVLYQYALIKGLQSYIQ 1072 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214 L + + P Y+ GP H RFT V ++ + + S + A+ Sbjct: 1470 LNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDS 1529 Query: 215 AAAEVLK 221 AA +L+ Sbjct: 1530 AAVLLLE 1536 >gi|224068194|ref|XP_002302679.1| dicer-like protein [Populus trichocarpa] gi|222844405|gb|EEE81952.1| dicer-like protein [Populus trichocarpa] Length = 1817 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 30/244 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + ++ + TLE + F +R LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1518 LRSVDFDTLEGALDIKFNDRGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1577 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFM-------- 111 + + G L+ + V+ E ++VA + L +R S L K + F+ Sbjct: 1578 FTYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALEKQIRDFVREVQDELL 1637 Query: 112 --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 + D+VES+ A++LD G + A + V + + Sbjct: 1638 KPVFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMH 1697 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 ELQE + EYK T RSG TV V I G+ + K+ A+++AA Sbjct: 1698 PVRELQERCQQQAEGL-EYKAT-RSGN----LATVEVFIDGVQVGVAQNPQKKMAQKLAA 1751 Query: 217 AEVL 220 L Sbjct: 1752 RNAL 1755 Score = 75.1 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 1305 ELKDIINYPVPASKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1361 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 1362 EGQLTRMRQQMVSNMVLYQYALNKGLQSYIQ 1392 >gi|325286163|ref|YP_004261953.1| ribonuclease III [Cellulophaga lytica DSM 7489] gi|324321617|gb|ADY29082.1| ribonuclease III [Cellulophaga lytica DSM 7489] Length = 246 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 58/215 (26%), Positives = 100/215 (46%), Gaps = 12/215 (5%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAK 67 +G+ N S+ KA H S + ++ +YERLEFLGD +LG +IS L+N Sbjct: 25 ILGFKPKNISIYRKAFLHRSANKKDKDGNPLNYERLEFLGDSMLGTIISKYLYNEVPLGD 84 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ + +VS E +++ ++L+L ++ + R F +I +V E+L+ A+Y Sbjct: 85 EGYLTKMRSKIVSREHLNELGKDLELIKYV----ESRISKSHFGDNIHGNVFEALVGAIY 140 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LD G + F+++ + + K+ + EW + Y V +G D Sbjct: 141 LDRGYQYCEKFINERVIGPYVDIEQLEGRVISYKSLVIEWCQKQKKQ-FNYNVYEDTGND 199 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 F V + I A+ SK+ AE+ A+ Sbjct: 200 TLKHFAVKLSIDNNVIAKARATSKKKAEEAASKRA 234 >gi|268564825|ref|XP_002639240.1| C. briggsae CBR-DRSH-1 protein [Caenorhabditis briggsae] gi|74847096|sp|Q61XX9|RNC_CAEBR RecName: Full=Ribonuclease 3; AltName: Full=Protein drosha; AltName: Full=Ribonuclease III; Short=RNase III gi|187036021|emb|CAP24627.1| CBR-DRSH-1 protein [Caenorhabditis briggsae AF16] Length = 1061 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 67/218 (30%), Positives = 102/218 (46%), Gaps = 13/218 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + LE+ IG F N LL KA T + + + +RLE+LGD +L L+IS L+ + Sbjct: 810 DFHRLEQIIGIEFNNIRLLAKAFTRRNVPFNDLTKGHNQRLEWLGDSVLQLIISDYLYRN 869 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG +S+ SLVS +T S V +L F+ + + D +AD+VE+ Sbjct: 870 FPLHHEGHMSLLRTSLVSNQTQSVVCDDLGFQEFVIKAPHRKND---LKMKDKADLVEAF 926 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFG------VTPE 174 I ALY+D G+E +F+ + R + DAK+ LQ+W A PE Sbjct: 927 IGALYVDKGLEYCRSFIRTVFCPRLKHFINSEKWNDAKSHLQQWCLAIRDSRNPNPAMPE 986 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 Y++ GP ++ F V V G + + AE Sbjct: 987 YRLLGIQGPTNNRIFRVAVYFRGERLSSAAASNMHTAE 1024 Score = 89.0 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 65/187 (34%), Gaps = 48/187 (25%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSI-------------------------SHSYQ 37 S EK I Y F +R ++E AL HSS + + Sbjct: 583 NFSLSVFEKVIEYKFNDRRIVELALIHSSFRSYYGTTPDHVKNMISNCGYRKKYGAEERR 642 Query: 38 E-----------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 E ERLE+LGD ++ L+ S LF + EG L+ Sbjct: 643 EKKKGIISLFNIMGGETSGGEPILHNERLEYLGDAVVELIASHHLFFILNHHFEGGLATY 702 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 +LV +++A + ++ + + A+ E+L+A ++LD GI Sbjct: 703 RTALVQNRNLAKLAMNCRIDEMLQFAHGADLINEAEWKHALANAFEALMAGVFLDSGIAP 762 Query: 135 AGTFVDK 141 K Sbjct: 763 CDAIFSK 769 >gi|325299342|ref|YP_004259259.1| Ribonuclease 3 [Bacteroides salanitronis DSM 18170] gi|324318895|gb|ADY36786.1| Ribonuclease 3 [Bacteroides salanitronis DSM 18170] Length = 325 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 58/229 (25%), Positives = 108/229 (47%), Gaps = 13/229 (5%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 Y + G+ N + ++AL H S S ++ + ERLEFLGD IL +++ Sbjct: 16 DKEPYLCFYRMTGFYPRNIDIYKQALLHKSSSIKNEKGRLLNNERLEFLGDAILDAVVAD 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +++ F+ +EG L+ + +V ET + +A ++ L ++ ++ S + + + Sbjct: 76 IVYKRFEKKREGFLTNTRSKIVQRETLNHIAVQIGLDKLVKFTT----RQSSHNSYMGGN 131 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPE 174 E+LI ALYLD G F+++ + L K R + K++L EW+ Sbjct: 132 AFEALIGALYLDRGYRACKKFMEERIISQYLDIDKLSRKEVNFKSKLIEWSQKN-KFQIA 190 Query: 175 YKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + +S D +P F + + + G SK+ ++Q AA E LK+ Sbjct: 191 FNLVNQSLDDELNPIFNTQILVENVPAGTGKGYSKKESQQEAAHETLKK 239 >gi|300727555|ref|ZP_07060946.1| ribonuclease III [Prevotella bryantii B14] gi|299775258|gb|EFI71859.1| ribonuclease III [Prevotella bryantii B14] Length = 360 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 108/225 (48%), Gaps = 13/225 (5%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 S+L +G+ + L ++AL H SI H + + ERLEFLGD IL ++ +++ H Sbjct: 21 SSLYDILGFYPHDIKLYKQALMHKSIMHRNSKGKPVNNERLEFLGDAILDAIVGDIVYQH 80 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F +EG L+ + LV +T +++A+E+ + I S + + + E+L Sbjct: 81 FPGKREGFLTNTRSKLVQRDTLNKLAQEMGITQLIL----SNGHSSSHNSYVGGNAFEAL 136 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTF 179 + A+YLD G F+ + + K + K++L EW+ V +++T Sbjct: 137 VGAVYLDRGYNACMNFMQNRILAKMINIDKVAYKEVNFKSKLIEWSQKN-RVKLSFEMTG 195 Query: 180 R-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + P F+ V I + A+G SK+ ++Q+A+ L + Sbjct: 196 QDKDKNGSPIFSYKVVIENIDGAEGKGYSKKESQQIASKGTLDKL 240 >gi|255037664|ref|YP_003088285.1| ribonuclease III [Dyadobacter fermentans DSM 18053] gi|254950420|gb|ACT95120.1| ribonuclease III [Dyadobacter fermentans DSM 18053] Length = 248 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 10/220 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY-----QESYERLEFLGDRILGLLISTLLFN 61 ++ IG +N + + A H+S S +ES ERLE+LGD +LG++++ LF Sbjct: 25 ESIAHVIGDKPSNLGVYQLAFRHTSASRETAIKGFRESNERLEYLGDAVLGMVVAEFLFT 84 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ + +V+ E+ +Q++R+L L I D + S +S+ D +E+ Sbjct: 85 KYPYKDEGFLTEIRSRIVNRESLNQISRKLGLDRLIEY--DGNRRGMSPRSSMYGDALEA 142 Query: 122 LIAALYLDGGIEVAGTFVD-KYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + A+YLD G TF+ K L S + + K+ + EWA + +++ Sbjct: 143 FVGAIYLDKGFRFTRTFIISKLITHYDLDSIIQNNVNFKSLIIEWAQREGKE-IRFEILE 201 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 G H F + ++ A G +K+ AEQ A+ + Sbjct: 202 ERGTRHHREFISQILVNDEPFAIGNGFTKKKAEQSASEQA 241 >gi|157285009|gb|ABV31244.1| dicer-like 1 [Physcomitrella patens] Length = 1662 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 102/244 (41%), Gaps = 30/244 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ + +LE IG+ F RSLL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1316 MLSIDFDSLEASIGHKFRKRSLLVEAITHASRPSSGVPGYQRLEFVGDAVLDYLITRFLF 1375 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111 + G L+ + V+ E ++VA + +R S + Sbjct: 1376 FKYTDLPPGRLTDLRAAAVNNENFARVAVKHSFHLHLRHGSSALETQIRNFVNDIQTELD 1435 Query: 112 --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 + D++ES+ AL+LD +E + V + Q + Sbjct: 1436 KPGVNSFGLGDFKAPKVLGDILESIAGALFLDACLETDHVWKVFEPLLQPMVTPETLPMH 1495 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 ELQE + EYK R+G TV V + G+ + K+ A+++AA Sbjct: 1496 PVRELQERCQQQAEAL-EYKA-SRAGN----VATVEVYVDGVQIGSAQNAQKKMAQKLAA 1549 Query: 217 AEVL 220 L Sbjct: 1550 RNAL 1553 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ +I Y A +L +ALT +S ++ SYER E LGD L ++S LF + Sbjct: 1095 QLKHQIDYPIAASKVL-EALTAASCQETF--SYERAELLGDAYLKWVVSRRLFLKYPCKH 1151 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A + L S+I+ Sbjct: 1152 EGQLTRMRQQIVSNSVLYQYALDKGLQSYIQ 1182 Score = 41.6 bits (97), Expect = 0.087, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 15/35 (42%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 L + + P+Y+ GP H +FT V + Sbjct: 1591 LNDLCLKRQWPMPQYRCVLEGGPAHAKKFTFSVRV 1625 >gi|325268333|ref|ZP_08134966.1| ribonuclease 3 [Prevotella multiformis DSM 16608] gi|324989475|gb|EGC21425.1| ribonuclease 3 [Prevotella multiformis DSM 16608] Length = 356 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 13/226 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + IG + + + AL H S++ + + ERLEFLGD IL ++ +++ Sbjct: 20 YLSLYQIIGIIPHDITYYKTALLHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + +V +T +++A+E+ + I S + + + E+ Sbjct: 80 HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGINQLIL----SNGHSSSHNSYLGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ ALYLD G F+ + K + K++L EW+ V E+K+ Sbjct: 136 LVGALYLDHGYNACMQFMKTRILGELINIDKVAYKEVNFKSKLIEWSQKN-KVKMEFKLI 194 Query: 179 F-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + P F V + GL +G SK+ ++Q A+ L+R Sbjct: 195 ENQKDKQGSPTFYFQVLMEGLPCGEGRGYSKKESQQEASKLTLQRL 240 >gi|332881433|ref|ZP_08449083.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680809|gb|EGJ53756.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 297 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 12/222 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62 YS+ K +G+ + E+AL H S S Q + ERLEFLGD IL ++ ++F H Sbjct: 21 YSSFYKILGFYPHHIQYYEQALHHKSSSIKKQGSWINNERLEFLGDAILDAVVGDIVFRH 80 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F +EG L+ + +V ET +++A E+ L I + + + + E++ Sbjct: 81 FKGKREGFLTNTRSKIVQRETLNRLAVEIGLDKLII----SSTHSSTHNSYMCGNAFEAM 136 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTF 179 + A+YLD G F+ K + + K + K++L EW + V + + Sbjct: 137 VGAIYLDRGYSYCMRFIGKRIMTQLINIDKLAYKEVNFKSKLIEWGQKR-RVEITFDLID 195 Query: 180 RSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 ++ P FT + I G+ +G SK+ ++Q+AA + L Sbjct: 196 QAREGSSTPVFTTQITIEGVTCCKGRGYSKKESQQLAAKDTL 237 >gi|300933883|ref|ZP_07149139.1| ribonuclease III [Corynebacterium resistens DSM 45100] Length = 264 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 6/203 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 + + L + G ++ L ALTH S ++ + ERLEFLGD +LGL ++ L Sbjct: 18 NKTDHEPLRQAWGVDISD-DYLCLALTHRSFANENDNLPNNERLEFLGDAVLGLTVAEQL 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F + E E+S +V+ + VAREL+L I + + SI +D V Sbjct: 77 YRQFPNRTESEISKMRAGVVNMYALADVARELNLGPNILLGRGEMRTGGDDKHSILSDTV 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177 E+++ A+YL+ G A V + + R ++ D KT L E Y Sbjct: 137 EAILGAIYLEHGFATARETVLRIFSDRITEAPTVGLTMDWKTVLVEKLSDLKLGDAVYAS 196 Query: 178 TFRSGPDHDPRFTVVVEISGLAP 200 GP+H+ F + I+ Sbjct: 197 HGE-GPEHNQTFYAQLAITSKRL 218 >gi|281421655|ref|ZP_06252654.1| ribonuclease 3 [Prevotella copri DSM 18205] gi|281404289|gb|EFB34969.1| ribonuclease 3 [Prevotella copri DSM 18205] Length = 360 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 11/225 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + +G+ + S + AL H SI H + + ERLEFLGD +L ++ +++ Sbjct: 20 YLSLYEILGFYPHDISYYKMALLHKSIMHRNSKGKPVNNERLEFLGDAVLDAVVGDIVYQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV +T +++A+E+ + I S + + + E+ Sbjct: 80 HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGINQLIL----SNGHSSSHNSYMGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G + F+ K + + K + K++L EW+ + Sbjct: 136 LVGAIYLDRGYDACMYFMQKRILAQMINIDKVAYKEVNFKSKLIEWSQKNRVKLDFVMLD 195 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + P FT V + G+ G SK+ ++QVA+ L++ Sbjct: 196 QQKDKNGSPIFTYQVVLEGVDGGVGKGYSKKESQQVASKTSLEKL 240 >gi|332885395|gb|EGK05644.1| hypothetical protein HMPREF9456_02446 [Dysgonomonas mossii DSM 22836] Length = 290 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 13/229 (5%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTL 58 Y + K G+ N +L E+AL H S S ++ + ERLEFLGD IL +++ + Sbjct: 17 KEPYVSFYKIFGFYPYNITLYEQALLHKSSSIKLKDGKWINNERLEFLGDAILDAIVADI 76 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 +F F+ KEG L+ + +V ET +++A EL + I+ S+ + T + + Sbjct: 77 VFKEFEYKKEGFLTNMRSKIVQRETLNKLALELGIDKLIKTSA----RNTTPNTHMYGNA 132 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEY 175 +E+LI A+YLD G V+ FV + + L + K+ L EW+ + ++ + Sbjct: 133 LEALIGAIYLDQGYRVSKKFVLERLIKEHLNIDTVAEQEANYKSRLIEWSQKQ-KISVSF 191 Query: 176 KVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +++ P F V I G G SK+ ++Q AA E + Sbjct: 192 DLVDSFVDENNTPIFKTAVVILGEQAGLGTGYSKKESQQKAAKEAFNKL 240 >gi|159904268|ref|YP_001551612.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9211] gi|159889444|gb|ABX09658.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9211] Length = 249 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 107/207 (51%), Gaps = 7/207 (3%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 ++ +ALTH+S + + ++ERLEFLGD +L L S + +F + K G+ S LVS Sbjct: 43 NIFNEALTHTSTNS--KTNHERLEFLGDAVLRLAASEYIEENFPNLKVGDRSALRAQLVS 100 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFV 139 E ++V +E+++ F+ + KD + T +QA+ E++I ALY I+ ++ Sbjct: 101 DEWLTKVGQEINIKQFMLIGPKAHKDKAASAT-LQAEATEAMIGALYECLKDIKSIKVWL 159 Query: 140 DKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEIS 196 YW + +++ R ++K+ LQEW+ P YK S DP RF V I+ Sbjct: 160 KPYWDKTSKSVLEDPHRLNSKSALQEWSQGNGLDIPIYKNEELSQKHGDPRRFFCKVLIN 219 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G S++ AE+ AA + L + Sbjct: 220 KKILGEGWGSSRKQAEKEAALKALNKL 246 >gi|148241236|ref|YP_001226393.1| ribonuclease III [Synechococcus sp. RCC307] gi|147849546|emb|CAK27040.1| Ribonuclease III [Synechococcus sp. RCC307] Length = 236 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 65/209 (31%), Positives = 97/209 (46%), Gaps = 11/209 (5%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L ALTH+S ++E LEFLGD +L L + L + GE S LVS Sbjct: 25 LHTALTHTSAGLEV--NHEELEFLGDAVLRLACAEFLEENNSKLSVGERSAFRAQLVSDR 82 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL-----DGGIEVAGT 137 +++A EL L I+ S D + T ++A+ E+L+ A+YL DGG+ Sbjct: 83 WLAELAAELQLDGLIKQGSATAADTTARAT-VRAECCEALVGAVYLAWGGADGGLHAVRQ 141 Query: 138 FVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVE 194 ++D W++ L+ R + K+ LQE A+ P Y T + D RF VV Sbjct: 142 WLDPQWQRSCLELAEDPHRHNWKSALQELTQAQQAGLPSYSTTEENSNHGDQRRFRSVVS 201 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ G S+R AEQ AA L++ Sbjct: 202 VNAKEKGCGWGPSRRLAEQEAARAALEQL 230 >gi|260061436|ref|YP_003194516.1| putative ribonuclease III [Robiginitalea biformata HTCC2501] gi|88785568|gb|EAR16737.1| putative ribonuclease III [Robiginitalea biformata HTCC2501] Length = 245 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 12/216 (5%) Query: 11 KRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +G+ + + ++A H S++ + + +YERLEFLGD +LG +IS L+N + Sbjct: 24 RILGFKPKSLEVYKRAFLHRSVNKKDKNGHPMNYERLEFLGDSMLGTIISKHLYNEVPAG 83 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ + +VS + +++ ++L L +F+ + R F +I +V E+L+ A+ Sbjct: 84 DEGYLTKMRSKIVSRKHLNELGKDLGLLNFV----ESRIPKAHFGENIHGNVFEALVGAI 139 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD G + F+ + + + K+ + EW + E++V +G Sbjct: 140 YLDRGYKYCEKFIQSRVIEPYVDIEQLEGQVISYKSLVIEWCQKQKKE-FEFEVYEDTGN 198 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 D F V + I G A+ SK+ AE+ A+ Sbjct: 199 DPVKHFAVKLHIDGRILAKARATSKKKAEEKASRRA 234 >gi|148377702|ref|YP_001256578.1| ribonuclease III (RNase III) [Mycoplasma agalactiae PG2] gi|148291748|emb|CAL59137.1| Ribonuclease III (RNase III) [Mycoplasma agalactiae PG2] Length = 226 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 111/227 (48%), Gaps = 10/227 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLL 59 M+++ + ++ +A TH SS+++S ++Y+ LEFLGD IL +S +L Sbjct: 1 MNSI--ENFLNNFNIKPVSLAVYRQAFTHGSSVANSKGKNYQTLEFLGDAILQFYVSAIL 58 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 FN F +G+L++ + LV ++ +Q+A L L F+ +SS++ + AD+ Sbjct: 59 FNSFKDKNQGQLTLIRSKLVCTDSLNQIADLLKLKDFLVLSSNVVATEVLSSKKVGADIF 118 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFR-RDAKTELQEWAHAKFGVTPEYK 176 ESL+AA++LD G+ F+DK + K GK +D+KT LQE + T Y+ Sbjct: 119 ESLVAAIFLDQGLPKVKDFLDKTLLPLVKQYKEGKIELKDSKTRLQEHMQSFSKKTVFYQ 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + F G G+ SK AE+ AA + L + Sbjct: 179 TYQSE----NNLFKAEAIYEGNVYGSGVGKSKHEAEENAANDALNKL 221 >gi|307564748|ref|ZP_07627276.1| ribonuclease III [Prevotella amnii CRIS 21A-A] gi|307346470|gb|EFN91779.1| ribonuclease III [Prevotella amnii CRIS 21A-A] Length = 266 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 56/225 (24%), Positives = 105/225 (46%), Gaps = 13/225 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + G+ N S + AL H S+S ++ + ERLEFLGD +L +++ +++N Sbjct: 20 YLSLYQITGFIPHNISYYKTALLHKSVSQRNKKGKLINNERLEFLGDAVLDCVVADIVYN 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F + +EG L+ + +V ET ++V+ E+ + ++ + +I + E+ Sbjct: 80 RFPNKREGFLTNTRSKIVKRETLNKVSTEMGINKMLK----QNGHTITHNCNIAGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 L+ ALY+D G F+ + K + K++L EW V+ + Sbjct: 136 LVGALYIDHGYNACMIFMRDHVCGCLLSIEKMAYQEMNYKSKLIEWTQKN-KVSVTFDEV 194 Query: 179 FRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 S ++ +P F V I + +G +K+ ++Q AA KR Sbjct: 195 KTSIDENGNPIFLAQVVIGNVRCEEGKGFTKKESQQNAAKLTYKR 239 >gi|260436673|ref|ZP_05790643.1| ribonuclease III [Synechococcus sp. WH 8109] gi|260414547|gb|EEX07843.1| ribonuclease III [Synechococcus sp. WH 8109] Length = 241 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 63/212 (29%), Positives = 93/212 (43%), Gaps = 10/212 (4%) Query: 19 NRSLL---EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 N LL ++ALTH S + ERLEFLGD +L L + + G S Sbjct: 23 NPELLALVDQALTHVS--SGRTRNLERLEFLGDAVLRLAATEFIDRDHTDLAVGACSNLR 80 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEV 134 LVS + V LD+ + V + D + + ++AD E+LI ALY G +E Sbjct: 81 AQLVSDRWLADVGSALDIEQHLLVGRHAQGDRSAQ-SRLRADATEALIGALYSALGNVEA 139 Query: 135 AGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTV 191 ++ +W +A+ + + + KT LQEW+ + P Y S DP RF Sbjct: 140 IHRWLTPHWCATAQAVLTNPHQFNGKTTLQEWSQGQGLGLPNYATEECSRQHGDPERFRC 199 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V I A+ S++ AEQ AA L+ Sbjct: 200 RVSIQDRELAEAKGRSRKEAEQNAATAALQAL 231 >gi|220905831|ref|YP_002481142.1| Ribonuclease III [Cyanothece sp. PCC 7425] gi|219862442|gb|ACL42781.1| Ribonuclease III [Cyanothece sp. PCC 7425] Length = 238 Score = 177 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 9/211 (4%) Query: 5 RYSTLEKRIGY---AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L R+G LL+ ALTH + S Q +YE+LEF GD + L ++ L Sbjct: 11 QLEKLIDRLGLVNPPPIRWDLLDLALTHPTFS--PQANYEQLEFFGDAVARLTVAQFLRQ 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + GE + + LVS T + + L F+ + S D S TS AD +E+ Sbjct: 69 TYPDRSVGEWTAIRSVLVSDRTLATIGDSYGLERFLLMGSSAAAD-ASGQTSRLADAMEA 127 Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 L+AALYL + ++D++W+ A+ + ++ K LQ W A PEY+V Sbjct: 128 LLAALYLSTSDFRLIHPWLDRHWQPLAEAILNDPAHQNYKAALQTWTQATSRTLPEYRVQ 187 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + RF V + G+ QG S + Sbjct: 188 EIQQASPEERFQAEVWVQGVLLGQGTGRSIK 218 >gi|260591983|ref|ZP_05857441.1| ribonuclease 3 [Prevotella veroralis F0319] gi|260536267|gb|EEX18884.1| ribonuclease 3 [Prevotella veroralis F0319] Length = 354 Score = 177 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 13/226 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L IG+ N + AL H SI+ + + ERLEFLGD IL ++ +++ Sbjct: 20 YLSLYHIIGFIPHNIDYYKTALLHKSIARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + +V +T +++A+E+ + I S + + + E+ Sbjct: 80 HFPYKREGFLTNTRSKIVQRDTLNRLAKEMGINQLIL----SNGHSSSHNSYMGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ ALYLD G F+ K + K + K++L EW+ V E+++ Sbjct: 136 LVGALYLDHGYNACMEFMRKQILGELINIDKVAYKEVNFKSKLIEWSQKN-KVNMEFRLI 194 Query: 179 F-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P F V + +A +G SK+ +Q AA L+R Sbjct: 195 EHEKDKQGSPTFHFQVFMEEIACGEGRGYSKKEGQQEAAKLTLQRL 240 >gi|300868781|ref|ZP_07113390.1| ribonuclease III [Oscillatoria sp. PCC 6506] gi|300333217|emb|CBN58582.1| ribonuclease III [Oscillatoria sp. PCC 6506] Length = 237 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 15/216 (6%) Query: 5 RYSTLEK---RIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 R LEK ++G NR LL+ ALTH + S Q +YE+LEF+GD ++ L S L Sbjct: 8 RQKELEKLVEKLGLPDRNRVNWQLLDLALTHPTAS--TQANYEQLEFIGDAVVRLAASEL 65 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + + GE + + LVS T +Q+A ++ VSS D S AD Sbjct: 66 LFETYPGSSVGEFAAIRSLLVSDRTLAQIADSYGFGRYLIVSSSAACDKAGE-ESRLADA 124 Query: 119 VESLIAALYLDGG-IEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEY 175 E+++AALYL +++ ++D +++ RA + S R++ K LQEW ++ + PEY Sbjct: 125 FEAVLAALYLSTNTLQLIRPWLDPHFQPRAAQILSDPARQNYKAALQEWTQGQYKILPEY 184 Query: 176 KVTFRSGPDH--DPRFTVVVEISGLAPAQGMDCSKR 209 V +G H + RFT V + G +G S + Sbjct: 185 NV-KETGRVHGEEERFTAEVWLRGDLLGEGKGRSIK 219 >gi|325859734|ref|ZP_08172864.1| ribonuclease III [Prevotella denticola CRIS 18C-A] gi|327312785|ref|YP_004328222.1| ribonuclease III [Prevotella denticola F0289] gi|325482660|gb|EGC85663.1| ribonuclease III [Prevotella denticola CRIS 18C-A] gi|326945209|gb|AEA21094.1| ribonuclease III [Prevotella denticola F0289] Length = 356 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 13/226 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + IG + + + AL H S++ + + ERLEFLGD IL ++ +++ Sbjct: 20 YLSLYQIIGIIPHDITYYKTALLHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + +V +T +++A+E+ + I S + + + E+ Sbjct: 80 HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGINQLIL----SNGHSSSHNSYLGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ ALYLD G F+ + K + K++L EW+ V E+K+ Sbjct: 136 LVGALYLDHGYNACMKFMKTQILGELINIDKVAYKEVNFKSKLIEWSQKN-KVKMEFKLI 194 Query: 179 F-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + P F V + GL +G SK+ ++Q A+ L+R Sbjct: 195 ENQKDKQGSPTFYFQVLMEGLPCGEGRGYSKKESQQEASKLTLQRL 240 >gi|78211701|ref|YP_380480.1| RNAse III [Synechococcus sp. CC9605] gi|78196160|gb|ABB33925.1| Ribonuclease III [Synechococcus sp. CC9605] Length = 241 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 7/206 (3%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 L+++A+TH S + ERLEFLGD +L L + + H G S LVS Sbjct: 29 LVDQAMTHVS--SGRDRNLERLEFLGDAVLRLAATEFIDRHHADLTVGACSNLRAQLVSD 86 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVD 140 + V L + + + + D + + ++AD E+LI ALY G ++ ++ Sbjct: 87 RWLADVGEALGIEEHLLLGRHAQGDRSA-RSRLRADATEALIGALYTALGNLKAIHRWLT 145 Query: 141 KYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISG 197 +W +A+ + + KT LQEW+ + P Y S DP RF V I G Sbjct: 146 PHWSATTQAVLATPHQFGGKTTLQEWSQGQGLGLPRYATEECSRQHGDPERFRCQVSIQG 205 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKRE 223 A+ S++ AEQ AA L+ Sbjct: 206 RNLAEAKGRSRKEAEQNAATAALQAL 231 >gi|293363981|ref|ZP_06610717.1| ribonuclease III [Mycoplasma alligatoris A21JP2] gi|292552471|gb|EFF41245.1| ribonuclease III [Mycoplasma alligatoris A21JP2] Length = 226 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 7/214 (3%) Query: 15 YAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N+ + +AL H S ESYERLEFLGD +L L +S+ ++ F + ++G+++ Sbjct: 16 IEPKNKLIYFQALKHGSFVKKQSKLESYERLEFLGDSVLQLFVSSYIYTKFPNMEQGKMT 75 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +V+A + SQV+ ++ L + ++ T +Q+D+ ES+I A+++D G+ Sbjct: 76 ELRAKVVNANSLSQVSNKIGLINLLKTGGGQTAVSVKSSTKVQSDIFESIIGAIFVDLGL 135 Query: 133 EVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 A F+ + K +D KT LQE+ +Y V + F+ Sbjct: 136 NHAYKFIRLHLSSTIDNLFKHENKDPKTRLQEYFQNISRENIKYIVDQL----PNKSFSA 191 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + G SK+ +E AA E LK+ I Sbjct: 192 KATHDKIVYGIGKGSSKKESEINAALEALKKLNI 225 >gi|288800507|ref|ZP_06405965.1| ribonuclease III [Prevotella sp. oral taxon 299 str. F0039] gi|288332720|gb|EFC71200.1| ribonuclease III [Prevotella sp. oral taxon 299 str. F0039] Length = 321 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 108/222 (48%), Gaps = 13/222 (5%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63 +L +G+ N L + AL+H SI ++ + ERLEFLGD IL ++ +++ HF Sbjct: 2 SLYTILGFYPRNIELYQMALSHKSIHFKNKKGKPVNNERLEFLGDAILDAIVGDIVYKHF 61 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +EG L+ + LV ET +++A+E+ L+ I SS S+M + E+LI Sbjct: 62 PGKREGFLTNTRSKLVQRETLNKIAQEIGLSRLIY-SSGRNFSHNSYMA---GNAFEALI 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFR 180 ALYLD G + F+ + ++ + + K+ L EWA + + + + Sbjct: 118 GALYLDRGYNLCMRFMQEKILKKMVNIDTVAYKEVNFKSRLIEWAQKN-KMNIAFNLLEQ 176 Query: 181 SG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + +P F V I G+ SK+ ++Q+A+ E L+ Sbjct: 177 KKDEEGNPVFKYCVVIEGIKCNSASGFSKKESQQLASEETLE 218 >gi|150024312|ref|YP_001295138.1| ribonuclease III [Flavobacterium psychrophilum JIP02/86] gi|149770853|emb|CAL42318.1| Ribonuclease III [Flavobacterium psychrophilum JIP02/86] Length = 246 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 106/222 (47%), Gaps = 12/222 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLL 59 L +S LEK +G+ N + +A TH S++ +YERLEF+GD +LG +I+ L Sbjct: 18 LFFSKLEKILGFKPLNLTHFRRAFTHRSMNKLDEKGNPMNYERLEFMGDAMLGSVIAAHL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 FN + EG L+ + +VS E +++ ++L+L F+ + + + +F +I ++ Sbjct: 78 FNMSPTGDEGYLTKMRSKIVSREHLNELGKDLNLIQFL----ESKVTLQNFGENIHGNLF 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYK 176 E+ + A+YLD G F+ K + + K K+ L EW + V Y Sbjct: 134 EAFVGAIYLDRGFVYCEKFIHKKVIKPYVDIDKLEGKVISYKSLLIEWCQKEKRV-FHYD 192 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 + F V + I G A+ SK+ AE++A+ Sbjct: 193 IYEDEDAGKLKYFGVKLSIDGKVVAKARATSKKKAEEIASKR 234 >gi|33241211|ref|NP_876153.1| dsRNA-specific ribonuclease/ribonuclease III [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|5738536|emb|CAB52818.1| ribonuclease III [Prochlorococcus marinus] gi|33238741|gb|AAQ00806.1| dsRNA-specific ribonuclease/ribonuclease III [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 249 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 7/207 (3%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +L +ALTH+S + S ++ERLEF GD +L L S + +HF G+ S LVS Sbjct: 44 KILNEALTHTSFNLSI--NHERLEFQGDAVLRLAASEYIQSHFPKLSVGDRSALRAQLVS 101 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFV 139 ++V ++ + + + +++ KD + +I A+ E+LI ALY I+ ++ Sbjct: 102 DRWLAKVGYKIGIKTTMLIANKALKDEAAT-DTICAEGTEALIGALYECLRNIDAIQNWL 160 Query: 140 DKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEIS 196 + YW + + + +++ K+ LQEW+ + P Y + S D RF V I Sbjct: 161 EPYWNIESEEVLADPHKQNEKSALQEWSQGQGLNKPIYTIKEISKQHGDLKRFYCTVHIQ 220 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G S++ A++ AA E LK+ Sbjct: 221 NDFRGEGWGSSRKKAQKEAAKEALKKL 247 >gi|72383017|ref|YP_292372.1| RNAse III [Prochlorococcus marinus str. NATL2A] gi|72002867|gb|AAZ58669.1| RNAse III [Prochlorococcus marinus str. NATL2A] Length = 247 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 106/210 (50%), Gaps = 7/210 (3%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 N + ++LTHSS + +YE LEFLGD +L L+ S + N + + GE S Sbjct: 32 KIKNILYINESLTHSSANSEI--NYENLEFLGDAVLRLIASDFIKNKYPYMQVGERSELR 89 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI-EV 134 + LVS +V +++++ S + + + +D + +IQA+ E+LI ALY I E Sbjct: 90 SHLVSDLWLEEVGKKIEINSVLVIGNKALRDKSA-NATIQAEATEALIGALYESLTIVEP 148 Query: 135 AGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTV 191 ++ +W++ + + + +++ K+ LQE +K P YK D+ RF Sbjct: 149 IKDWLIPFWEEKSKEVLADPHKKNYKSALQELTQSKGLSIPIYKTIEIDKKHDNPKRFFC 208 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V + + A+G S + AE+ AA++ LK Sbjct: 209 NVYVKNRSIAEGSGKSIKQAEKNAASKALK 238 >gi|86131058|ref|ZP_01049657.1| ribonuclease III [Dokdonia donghaensis MED134] gi|85818469|gb|EAQ39629.1| ribonuclease III [Dokdonia donghaensis MED134] Length = 245 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 108/221 (48%), Gaps = 12/221 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + ++ IG+ N ++ EKA TH S+ ++ +YERLEFLGD +LG +I+ LFN Sbjct: 19 FMRMQSIIGFKPKNLAIYEKAFTHRSLGLKKEDGNPLNYERLEFLGDAMLGSVIAAHLFN 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG L+ + +VS + +++ R+L+L +++ S + +I ++ E+ Sbjct: 79 EVQGGNEGYLTKMRSKVVSRKHLNELGRDLNLVRYVKASIPIDNFGA----NIHGNLFEA 134 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G F+ K + + K K+ L EW + T +++ Sbjct: 135 LVGAIYLDRGYRYCEKFIAKRVIEPYVDIEKLEGRIISYKSVLIEWCQKEKH-TFKFETF 193 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +G D F V + I G A+ SK+ AE++A+ Sbjct: 194 EDTGQDAVKHFGVRLHIDGKIIAKARATSKKKAEEIASKRA 234 >gi|155370768|ref|YP_001426302.1| hypothetical protein FR483_N670L [Paramecium bursaria Chlorella virus FR483] gi|155122358|gb|ABT14226.1| hypothetical protein MT325_M672L [Paramecium bursaria chlorella virus MT325] gi|155124088|gb|ABT15955.1| hypothetical protein FR483_N670L [Paramecium bursaria Chlorella virus FR483] Length = 266 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 7/222 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +G + L A S + E++ERLEFLGD +LG LI+ L++ F Sbjct: 43 EDIAHLVGMPVGDFGLYVTAF---SYNPILEGGETFERLEFLGDSVLGFLIAKYLYDTFP 99 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ VS + S++A L L ++I +S + I D E+LI Sbjct: 100 GKNEGILTRIRVKFVSGKFLSKLALNLGLHNYIIMSQKGLYRGWNTNPKILEDAFEALIG 159 Query: 125 ALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGGI A F + A ++ + K L + PE+ + F G Sbjct: 160 AIYLDGGINAAKQFFMTTLARHANIQELLIDSNHKDRLAKHCRRLSLGRPEFVIQFERGG 219 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + F V V + G A+G +++ AEQ A + L GI Sbjct: 220 ANS-LFIVGVHVDGNKFAEGSGTTRKDAEQDACNKALLHMGI 260 >gi|254423613|ref|ZP_05037331.1| ribonuclease III [Synechococcus sp. PCC 7335] gi|196191102|gb|EDX86066.1| ribonuclease III [Synechococcus sp. PCC 7335] Length = 263 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 101/227 (44%), Gaps = 12/227 (5%) Query: 5 RYSTLEKRIGYAFAN--RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 L +G + A+ LLE AL S S ++ E+LEFLGD L L + L Sbjct: 33 DIEALLTALGISAADVRLELLELALVDIS--SSATQNNEKLEFLGDAALRLAAAEFLMER 90 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + G++S + +VS T + +A+ L ++ +S D S AD E++ Sbjct: 91 YPQMALGDMSAVRSQIVSDRTLATLAKRYHLRRYLILSKSAAGDKA-GTDSRLADTFEAI 149 Query: 123 IAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + ALYL G + + ++D ++ + ++L+S R++ K LQE + + P YKV+ Sbjct: 150 LGALYLSAGNLSLIRPWLDPHFARLTQSLRSDPARQNYKAALQELTQSHYKSLPTYKVSE 209 Query: 180 RSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKR 222 S D RF G S + AEQ AA L++ Sbjct: 210 ISQIHGDEERFQAEAWFQDKLWGTGKGRSMKMAEQAAARIAFNALEQ 256 >gi|148238540|ref|YP_001223927.1| ribonuclease III [Synechococcus sp. WH 7803] gi|147847079|emb|CAK22630.1| Ribonuclease III [Synechococcus sp. WH 7803] Length = 240 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 6/204 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +ALTH+S +E+LEFLGD +L L S + + GE S LVS Sbjct: 32 LNEALTHTS--SGLNPHHEQLEFLGDAVLRLAASEFIATAYPQMPVGERSSLRAQLVSDR 89 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 +Q+ + +A + R+ D + T I+A++ E+LI A+Y G++ ++ + Sbjct: 90 WLAQLGEAIAIAQWWRIGPKASGDPSAAAT-IRAELSEALIGAVYRIAGLQTVQAWLTPH 148 Query: 143 WK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLA 199 W+ A+ + +R ++K+ LQEW+ + P Y + S D RF V + Sbjct: 149 WQTSAEAVLADPYRGNSKSALQEWSQGQGLGLPRYSCSEVSQSHGDPKRFQASVTLPPDL 208 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 A G S+R AEQ AA ++ + Sbjct: 209 SAAGWGGSRREAEQQAAEALMAQL 232 >gi|284039991|ref|YP_003389921.1| ribonuclease III [Spirosoma linguale DSM 74] gi|283819284|gb|ADB41122.1| ribonuclease III [Spirosoma linguale DSM 74] Length = 253 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 94/207 (45%), Gaps = 9/207 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFNH 62 ++ IG +N L + AL H+S S ++ES ERLE+LGD +LG++I+ LF Sbjct: 30 SIAHIIGARPSNLGLYQLALRHTSASKATAIEGFRESNERLEYLGDAVLGMVIAEFLFKK 89 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG L+ + +V+ ET + +AR++ L I R TS+ D +E+L Sbjct: 90 YPYKDEGFLTEIRSRIVNRETLNGIARKIGLDQLIEY-DGSRTRSLPARTSMYGDALEAL 148 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 + A+YLD G + F+ K + + K+ L EWA + +++ Sbjct: 149 VGAVYLDKGFRFSRRFILKDLLAHYDIESVVQNNGNYKSRLIEWAQREGKE-IRFEIVSE 207 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS 207 G H F V I A G S Sbjct: 208 KGNSHFREFISQVVIDDEPFATGSGYS 234 >gi|86605510|ref|YP_474273.1| ribonuclease III [Synechococcus sp. JA-3-3Ab] gi|86554052|gb|ABC99010.1| ribonuclease III [Synechococcus sp. JA-3-3Ab] Length = 241 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 20/217 (9%) Query: 6 YSTLEKRIGYAFANR--------SLLEKALTHSSISHSYQESYERLEFLGDRILGLLIST 57 L R+G F + LL++AL H S+ Q + +RLEFLGD +L +L + Sbjct: 12 LEHLLNRLG--FKDPAWLEQLRWDLLDQALIHPSL--DGQRNNDRLEFLGDSVLRILATE 67 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF + GEL+ + L+S +++A L ++ V S + D + AD Sbjct: 68 FLFQSYPHLSVGELTAVRSDLISDAHLAELADLHGLERYLEVGSSSQND-LAGRERRLAD 126 Query: 118 VVESLIAALYLDGGIEVAGT---FVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVT 172 E+++ +LYL G+ ++D Y++QR + RR+ K LQE +G Sbjct: 127 AFEAVLGSLYLSWGMHTLARLHPWLDPYFRQRVEQWFQDPTRRNPKAALQELTQRLWGTL 186 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 PEY++ +H P FT+ V G +G SK+ Sbjct: 187 PEYRLVAAR--EHPPHFTMEVWGHGQCWGRGEGRSKK 221 >gi|311977725|ref|YP_003986845.1| probable ribonuclease 3 [Acanthamoeba polyphaga mimivirus] gi|82000280|sp|Q5UQT7|RNC_MIMIV RecName: Full=Probable ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|55416962|gb|AAV50612.1| RNAse III (dsRNA binding motif) [Acanthamoeba polyphaga mimivirus] gi|308204768|gb|ADO18569.1| probable ribonuclease 3 [Acanthamoeba polyphaga mimivirus] Length = 538 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 101/223 (45%), Gaps = 19/223 (8%) Query: 19 NRSLLEKALTHSSI-----------------SHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +A+TH S ++S ERL+FLGD ++ +I LFN Sbjct: 312 DLKLFYEAMTHRSYLIRKNLPNRDVPKSKSIVRLQKKSNERLQFLGDAVIHFIIGEYLFN 371 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EG L+ L ++E+ +A++ D++S++ +S ++ +I +E+ Sbjct: 372 KYADSGEGYLTRLRCKLENSESLFFLAKQSDISSYLLISQNIEVLHGRENVNIIGGGLEA 431 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + ALYL+ G+ F+ + + + + + K + + + P YK+ Sbjct: 432 FVGALYLNIGLGTVKQFLLEIMRIELDINQIAENETNYKDLILQLYNKNKWGHPVYKILK 491 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH FT+ + + G SK+ AEQ+A+ ++ + Sbjct: 492 EEGPDHCKIFTMGLYLGNKLMGIGKASSKKKAEQIASKKMYQN 534 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 96/216 (44%), Gaps = 12/216 (5%) Query: 16 AFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 + + + E+A+ H S + ++YERLE+LGD I ++I+ ++ ++ EG L+ Sbjct: 39 KYVDMHIFEEAMLHVSTIYEESDKTYERLEYLGDAIFHMIITEYFYHRYNEENEGFLTRL 98 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 + ++ ++++ L L +F+++ S I D+ ES I A YL+ G++ Sbjct: 99 RIRIERGDSMVELSKNLGLNNFVQI------YGISLNDHILEDIFESFIGAFYLNFGMKY 152 Query: 135 AGTFVDKYWKQRALKSGKFRRD--AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FT 190 F+ K ++ S D K L + H P+Y P ++ R F Sbjct: 153 TRLFIIKLIEKHKNLSELIAYDDNYKDLLLRYFHQMKWGHPKYIEEIVIDPKNNQRNKFI 212 Query: 191 VVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 V+ G +K+ +EQ+A+ L G+ Sbjct: 213 SKVKNPFDKVIGIGSASTKKKSEQLASQMALTNLGV 248 >gi|291572035|dbj|BAI94307.1| ribonuclease III [Arthrospira platensis NIES-39] Length = 246 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 61/211 (28%), Positives = 107/211 (50%), Gaps = 9/211 (4%) Query: 5 RYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +R+G + ++ LL+ ALTH S+S Q++YE+LEF+GD ++ L S LLF Sbjct: 15 QLEKLIERLGLSPQHKIAWQLLDLALTHPSVSS--QDNYEQLEFVGDSVVRLAASELLFE 72 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + +A GE + + LVS ++++ L ++ V +D S AD E+ Sbjct: 73 TYPNAPVGEFAAVRSILVSDRILAEISESYGLGRYLLVGGSATRDRLGE-ESRLADCFEA 131 Query: 122 LIAALYLDGG-IEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++AALYL +E+ ++D + +RA + + R++ K LQEW + + + P+YKV Sbjct: 132 VLAALYLSTNTLELIRPWLDPHLLERATEIFNDPARQNYKAALQEWTQSCYKILPQYKVN 191 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + RFT V + G + + Sbjct: 192 ETGYAGDEGRFTASVWLRDEQLGTGTGKTIK 222 >gi|312599268|gb|ADQ91291.1| hypothetical protein BpV2_124 [Bathycoccus sp. RCC1105 virus BpV2] Length = 242 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 101/221 (45%), Gaps = 10/221 (4%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLF 60 + ++E +G N L +KA H SI + S+E LEF+GD +LG +I+ LF Sbjct: 3 IDRQSVELLVGTKLTNLDLYQKAFRHKSILKEDESLDGSFETLEFIGDSVLGFVITKFLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + +++ +EG L+ LV ET + +A +L L +++++ ++ I DV E Sbjct: 63 DRYENRQEGFLTKARTKLVRGETLADIATKLGLYNWVQMDEKGMRNEWFKNPKILEDVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRD--AKTELQEWAHAKFGVTPEYKV 177 +L+ A+Y+D G+ A F+ + + D K L PEY+V Sbjct: 123 ALVGAIYMDLGLLHAKQFILNIYTNPEYVNMNSIMVDDNFKDHLMRHCQTNNLSLPEYRV 182 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 + F + V + + +G +K+ AEQ AA Sbjct: 183 LNHE----NGIFYIDVYVDNVFLGRGHAKNKKQAEQHAAKR 219 >gi|148985143|ref|ZP_01818382.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71] gi|147922588|gb|EDK73706.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71] Length = 153 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 3/147 (2%) Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 +V E+ + AR+ FI++ K +I D E+ + AL LD + Sbjct: 2 IVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAFLGALLLDKDVAKVKE 61 Query: 138 FVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 F+ + + +++G+F D KT LQE V Y+V +GP HD F V V + Sbjct: 62 FIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISETGPAHDKVFDVEVLV 120 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G + QG SK+ AEQ AA +++ Sbjct: 121 EGKSIGQGQGRSKKLAEQEAAKNAVEK 147 >gi|255027417|ref|ZP_05299403.1| ribonuclease III [Listeria monocytogenes FSL J2-003] Length = 151 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 45/147 (30%), Positives = 79/147 (53%), Gaps = 4/147 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA 147 S I ALYLD GI+ TF+++ + Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPKI 149 >gi|116071631|ref|ZP_01468899.1| Ribonuclease III [Synechococcus sp. BL107] gi|116065254|gb|EAU71012.1| Ribonuclease III [Synechococcus sp. BL107] Length = 251 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 8/204 (3%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +L+++ALTH S +++ERLEFLGD +L L + + +H+ + G S LVS Sbjct: 28 NLVDEALTHISAGRG--KNFERLEFLGDAVLRLAATEFIDHHYPNLPVGSCSSLRAQLVS 85 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY--LDGGIEVAGTF 138 +Q+ +L L SF+ + D + ++ AD E+LI A+Y D +E + Sbjct: 86 DRWLTQLGEKLQLESFLVIGPKALGDEAA-RATLHADATEALIGAIYSGSDNNLEPIHQW 144 Query: 139 VDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEI 195 + W+Q + + K+ LQEW+ A+ P Y T +S DP RF V++ Sbjct: 145 LTPQWQQTTADVFATPHLFNGKSILQEWSQAEGLGLPNYITTEQSCRHGDPERFKSHVQV 204 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEV 219 A G S++ AEQ AA+ Sbjct: 205 GTRLGADGFGRSRKYAEQNAASNA 228 >gi|255017842|ref|ZP_05289968.1| ribonuclease III [Listeria monocytogenes FSL F2-515] Length = 158 Score = 174 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 46/147 (31%), Positives = 79/147 (53%), Gaps = 4/147 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F N LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + EG ++ ++V + + A + + ++R+ K ++ ADV E Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSXYVRLGKGEEKAGGRTRPALLADVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA 147 S I ALYLD GI+ TF+++ + Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPKI 149 >gi|282881269|ref|ZP_06289955.1| ribonuclease III [Prevotella timonensis CRIS 5C-B1] gi|281304859|gb|EFA96933.1| ribonuclease III [Prevotella timonensis CRIS 5C-B1] Length = 347 Score = 174 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 105/226 (46%), Gaps = 13/226 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 YS+L IG+ + S + AL H S+ + + ERLEFLGD +L ++ +++ Sbjct: 20 YSSLYNIIGFYPHDISYYKLALMHKSVMRRNAKGRPVNNERLEFLGDAVLDAIVGHIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV T +++A E+ + S + + + E+ Sbjct: 80 HFPGKREGFLTNTRSKLVQRSTLNKLANEMGICKL----LLSSGRSSSHNSYVGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G + F+ L K + K++L EW+ V + + Sbjct: 136 LVGAIYLDRGYDACMRFMKNRILSEMLNIDKVAYKEVNFKSKLIEWSQKN-RVKIHFNLL 194 Query: 179 FRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + ++ +P F +VE+ G+ G SK+ ++Q+A+ L++ Sbjct: 195 EQKKDENGNPIFKYLVELEGIEGCSGEGFSKKESQQLASKLTLEQL 240 >gi|88808139|ref|ZP_01123650.1| putative ribonuclease III [Synechococcus sp. WH 7805] gi|88788178|gb|EAR19334.1| putative ribonuclease III [Synechococcus sp. WH 7805] Length = 269 Score = 174 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 6/204 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +ALTH+S +E+LEFLGD +L L S + + GE S LVS Sbjct: 61 LNEALTHTS--SGLHPHHEQLEFLGDAVLRLAASEFIAVAYPQMPVGERSSLRAQLVSDR 118 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 +Q+ + + + R+ D + T I+A++ E+LI A+Y G++ T++ + Sbjct: 119 WLTQLGEAITIEEWWRIGPKASGDPTAAAT-IRAELSEALIGAMYRIAGLQAVQTWLTPH 177 Query: 143 WKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLA 199 W++ A+ + R ++K+ LQEW+ + P Y + S D RF V + Sbjct: 178 WQRSAEAVLADPHRGNSKSALQEWSQGRGLGLPRYACSEVSQRHGDPKRFQASVTLPPDL 237 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 A G S+R AEQ AA ++ + Sbjct: 238 AADGWGGSRREAEQQAAEALMAQL 261 >gi|260910581|ref|ZP_05917245.1| ribonuclease 3 [Prevotella sp. oral taxon 472 str. F0295] gi|260635280|gb|EEX53306.1| ribonuclease 3 [Prevotella sp. oral taxon 472 str. F0295] Length = 473 Score = 174 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 112/227 (49%), Gaps = 15/227 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 YS+L + +G+ N + AL H S+ ++ + ERLEFLGD IL ++ +++ Sbjct: 20 YSSLFEILGFYPRNIGYYKLALMHKSVMRRGANGKPVNNERLEFLGDAILDAIVGDIVYR 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV ET +++A+E+ ++ I S + + + E+ Sbjct: 80 HFPGKREGFLTNTRSKLVQRETLNRLAQEMGISRLIL----SSGHSSSHNSYMGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G F++K + + K + K++L EW+ V ++ + Sbjct: 136 LVGAIYLDRGYASCMRFMEKRILTKMINIDKVAYKEVNFKSKLIEWSQKN-RVKLDF-IV 193 Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G D + P F VE+ G+ +G SK+ ++Q+A+ L+R Sbjct: 194 KEQGKDKNGSPFFLFCVELEGIEGCKGRGYSKKESQQLASKLTLERL 240 >gi|37929739|gb|AAP70361.1| ribonuclease III [Ehrlichia ruminantium] Length = 156 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 86/155 (55%) Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + +LV +VA+ ++L +FI +S R + +S + +E+LI A+YLDGG+ Sbjct: 1 KKKTALVCGTKLVEVAQSINLGTFIIMSDGERTCGGANNSSNLENALEALIGAIYLDGGL 60 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 + A F+ +WK A +DAKT LQEWA +K + P Y + +SGPDH+P FTV Sbjct: 61 KAAKNFIFLFWKNSAKHMKVPPQDAKTILQEWAQSKGLLAPSYHIVNKSGPDHNPIFTVE 120 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 V + Q +K+ AEQ AA+ +L++ T Sbjct: 121 VRMHSYETLQATGNNKKIAEQKAASLMLEKINYKT 155 >gi|303236120|ref|ZP_07322722.1| ribonuclease III [Prevotella disiens FB035-09AN] gi|302483702|gb|EFL46695.1| ribonuclease III [Prevotella disiens FB035-09AN] Length = 293 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 111/225 (49%), Gaps = 13/225 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y ++ IG N + AL H S++ ++ + ERLEFLGD IL ++ ++F Sbjct: 20 YLSIYHIIGILPHNLEYYKTALLHKSVARRNEKGRPINNERLEFLGDAILDAIVGDIVFQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + +V +T +++A+++ + I +S+ S + + + E+ Sbjct: 80 HFSGKREGFLTNTRSKIVQRDTLNRLAKDMGITRLI-LSNG---RSASHNSYLGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYK-V 177 L+ ALYLD G F+ K + K + K++L EW K V E+K + Sbjct: 136 LVGALYLDHGYNACKKFMQKQILGELINIDKVAYKEVNFKSKLLEWTQ-KHKVEIEFKPL 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F D +P F+ V + +A +G SK+ ++Q AA E ++R Sbjct: 195 NFGKDSDGNPTFSFQVILENIACGEGKGYSKKESQQEAAKETMQR 239 >gi|119487905|ref|ZP_01621402.1| Ribonuclease III [Lyngbya sp. PCC 8106] gi|119455481|gb|EAW36619.1| Ribonuclease III [Lyngbya sp. PCC 8106] Length = 242 Score = 174 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 106/212 (50%), Gaps = 11/212 (5%) Query: 5 RYSTLEKRIGYAFAN---RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +R+G + + LL+ ALTH SIS + +YE+LEF+GD ++ L S L+ Sbjct: 11 QLQKLVERLGLSEQDAIQWHLLDLALTHPSIS--MEANYEQLEFVGDAVVRLAASEFLWE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + GE S + LVS +++A + ++ + +D + AD +E+ Sbjct: 69 TYPKQPVGEFSAIRSVLVSDRFLAEIAESYGMGRYLLIGGSAAQDRMGEQSR-LADCLEA 127 Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++AA YL +++ +++ ++++ A + R++ K LQEW + + V PEY VT Sbjct: 128 ILAAFYLSTHNLQLIHPWLEPHFQKGATQILRDPARQNYKAALQEWTQSHYKVLPEYTVT 187 Query: 179 FRSGPDHD-PRFTVVVEISGLAPAQGMDCSKR 209 SGP D R+T V G +G S + Sbjct: 188 -ESGPMGDEERYTAQVWFQGKPVGEGRGRSIK 218 >gi|313678609|ref|YP_004056349.1| ribonuclease III [Mycoplasma bovis PG45] gi|312950171|gb|ADR24766.1| ribonuclease III [Mycoplasma bovis PG45] Length = 224 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLL 59 M+++ + + + +A TH SS +++ ++Y+ LEFLGD IL +S +L Sbjct: 1 MNSI--ENFLNQFNIKANSLLVYRQAFTHGSSAANAKNKNYQTLEFLGDAILQFYVSAIL 58 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 FN F +G+L++ LV ++ + +A L L F+ +SS++ + + AD+ Sbjct: 59 FNVFKDKNQGQLTLIRAKLVCTDSLNSIADRLKLKDFLLLSSNVVANEVLSSKKVGADIF 118 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFR-RDAKTELQEWAHAKFGVTPEYK 176 ESL+AA+++D G+ F+DK + K GK +D+KT LQE+ + T Y+ Sbjct: 119 ESLVAAIFIDQGMPKVKEFLDKTLLPLVKQYKEGKIELKDSKTRLQEYMQSFSKKTVFYQ 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D++ F G G+ SK AE+ AA + L + Sbjct: 179 TYQS---DNNQ-FKSEAIYEGNVYGSGLGKSKHEAEENAANDALNKL 221 >gi|87123193|ref|ZP_01079044.1| putative ribonuclease III [Synechococcus sp. RS9917] gi|86168913|gb|EAQ70169.1| putative ribonuclease III [Synechococcus sp. RS9917] Length = 231 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 105/208 (50%), Gaps = 9/208 (4%) Query: 18 ANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 + L L +ALTH+S +E+LEFLGD +L L + + + GE S Sbjct: 17 KDDELAQLNEALTHTS--SGLHPHHEQLEFLGDAVLRLAATEFIASTQPQLPMGERSALR 74 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 LVS + +Q+ ++ +A + ++ + DV T ++A++ E+LI A+Y GG++ Sbjct: 75 AQLVSDQWLAQLGEQIGIARWWQIGAMASGDVAGHAT-LRAELSEALIGAIYAIGGLQAV 133 Query: 136 GTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVV 192 ++ YW+ A+ + R ++K+ LQEW+ + P Y S DP RF Sbjct: 134 QAWLTPYWQPTSAAVLADPHRGNSKSALQEWSQGQALGLPAYDTREASRRHGDPRRFHCR 193 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V + L A+G S+R AEQ AAA +L Sbjct: 194 VSLPDL-LAEGWGGSRREAEQHAAAALL 220 >gi|124026759|ref|YP_001015874.1| putative ribonuclease III [Prochlorococcus marinus str. NATL1A] gi|123961827|gb|ABM76610.1| putative ribonuclease III [Prochlorococcus marinus str. NATL1A] Length = 247 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 108/210 (51%), Gaps = 7/210 (3%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 N + ++LTHSS + +YE LEFLGD +L L+ S + N + + GE S Sbjct: 32 KIKNILYINESLTHSSANSEI--NYENLEFLGDAVLRLIASDFIKNKYPYMQVGERSELR 89 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG-IEV 134 + LVS + +V +++++ + + + + +D + T IQA+ E+LI ALY +E Sbjct: 90 SHLVSDQWLEEVGKKIEIKNVLVIGNKALRDKSASAT-IQAEATEALIGALYESLTVLEP 148 Query: 135 AGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTV 191 ++ +W++ + + + +++ K+ LQE +K P YK T +P RF Sbjct: 149 IKDWLIPFWEEKSKEVLADPHKKNYKSALQELTQSKGLSIPIYKTTEIDKKHDNPERFFC 208 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V + + A+G S + AE+ AA++ LK Sbjct: 209 NVYVKNRSIAEGSGKSMKQAEKNAASKALK 238 >gi|209527991|ref|ZP_03276474.1| Ribonuclease III [Arthrospira maxima CS-328] gi|209491588|gb|EDZ91960.1| Ribonuclease III [Arthrospira maxima CS-328] Length = 246 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 11/212 (5%) Query: 5 RYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +R+G + + LL+ ALTH S+S Q++YE+LEF+GD ++ L+ S LL Sbjct: 15 QLEKLIERLGLSTQQKIAWQLLDLALTHPSVS--TQDNYEQLEFVGDSVVRLVASELLLE 72 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + +A GE + + LVS ++++ L ++ V +D S AD E+ Sbjct: 73 TYPNAPVGEFAAVRSILVSDRILAEISNSYGLGRYLLVGGSATRDRLGE-ESRLADCFEA 131 Query: 122 LIAALYLDGG-IEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++AALYL +E+ ++D++ +RA + R++ K LQEW + + + P+YKV Sbjct: 132 VLAALYLSTNTLELIRPWLDQHLLERATDIFNDPARQNYKAALQEWTQSCYKILPQYKV- 190 Query: 179 FRSGPDHDP-RFTVVVEISGLAPAQGMDCSKR 209 +G D RFT V + G G + + Sbjct: 191 NETGYAGDEARFTASVWLRGEQLGTGTGRTIK 222 >gi|313768121|ref|YP_004061552.1| hypothetical protein BpV1_122 [Bathycoccus sp. RCC1105 virus BpV1] gi|312599728|gb|ADQ91749.1| hypothetical protein BpV1_122 [Bathycoccus sp. RCC1105 virus BpV1] Length = 242 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 10/221 (4%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLF 60 + ++E +G L +KA H SI + S+E LEF+GD +LG +I+ LF Sbjct: 3 IDRQSVELLVGTKITKLDLYQKAFRHKSILKEDESLDGSFETLEFIGDSVLGFVITKFLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + +++ +EG L+ LV ET + +A +L L +++++ ++ I DV E Sbjct: 63 DRYENRQEGFLTKARTKLVRGETLADIATKLGLYNWVQMDEKGMRNEWFKNPKILEDVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRD--AKTELQEWAHAKFGVTPEYKV 177 +L+ A+Y+D G+ A F+ + + D K L PEY+V Sbjct: 123 ALVGAIYMDLGLLHAKQFILNIYTNPEYVNMNSIMVDDNFKDHLMRHCQTNNLSLPEYRV 182 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 + F + V + + +G +K+ AEQ AA Sbjct: 183 LNHE----NGIFYIDVYVDNVFLGRGHAKNKKQAEQHAAKR 219 >gi|332291744|ref|YP_004430353.1| Ribonuclease III [Krokinobacter diaphorus 4H-3-7-5] gi|332169830|gb|AEE19085.1| Ribonuclease III [Krokinobacter diaphorus 4H-3-7-5] Length = 245 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 15/223 (6%) Query: 11 KRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 IG+ EKA TH S+ + +YERLEFLGD +LG +I+ LFN Sbjct: 24 AIIGFKPKEIKYYEKAFTHRSLGLKKADGNPLNYERLEFLGDAMLGSVIAAHLFNAVQGG 83 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ + +VS + +++ R+L+L ++R S L +I ++ E+L+ A+ Sbjct: 84 NEGYLTKMRSKVVSRKHLNELGRDLNLVRYVRASIPLDNFG----VNIHGNLFEALVGAI 139 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD G + F+ K + + K K+ L EW + T +++ +G Sbjct: 140 YLDRGYKYCEKFIAKRVIEPYVDIEKLEGRIISYKSVLIEWCQKEKR-TFKFETFEDTGQ 198 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKRE 223 D F V + I G A+ SK+ AE++A+ +RE Sbjct: 199 DTVKHFGVKLFIDGKVVAKARATSKKKAEEIASKRTFYAFQRE 241 >gi|240047461|ref|YP_002960849.1| Ribonuclease III [Mycoplasma conjunctivae HRC/581] gi|239985033|emb|CAT05026.1| Ribonuclease III [Mycoplasma conjunctivae] Length = 228 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 9/224 (4%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLF 60 + + L ++ N + +ALTH S + YE LEFLGD I+ +S +F Sbjct: 6 SYQILKLLDKLEILPKNLEIYNQALTHKSYQHFNPNSSHYEMLEFLGDSIINFKVSEFIF 65 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + KEG+ S +S+ T +++ +L L+ I+V + T ++ADV E Sbjct: 66 SKINFQKEGQASQLRAKSISSLTFAKICDDLQLSDLIQVGKGAKD--ILTNTKLKADVFE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTF 179 S AA+YLD G EV F++KY +++ K +D K+E QE + Y+ T Sbjct: 124 SFCAAIYLDQGNEVLDLFLEKYLYDFVIQNAKHNNKDPKSEFQEKIQSFSTEKITYQSTK 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +S D F + G S + AE AA + L+R Sbjct: 184 QS----DGSFQSELIWDNQIFGVGSGKSMKEAEFNAARQALERM 223 >gi|254411633|ref|ZP_05025409.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420] gi|196181355|gb|EDX76343.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420] Length = 278 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 10/210 (4%) Query: 5 RYSTLEKRIGY---AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +++G A L+ ALTH S+S +Y++LEF+GD ++ + S LLF Sbjct: 53 QLQKLVQKLGLLDNAPVQWDKLDLALTHPSMSRDV--NYDQLEFVGDAVVRMAASELLFE 110 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + +A G+ + + LVS +Q+A+E L ++ ++ D S AD E+ Sbjct: 111 TYPNASVGDFAAIRSVLVSDRILAQLAQEYGLERYLLLAPSAAAD-PRGEMSRLADAFEA 169 Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ ALYL +E+ ++D ++++ + R++ K LQEW A + PEY++T Sbjct: 170 IVGALYLSTHTLELIRPWLDPHFQRLTEDILKDPARQNYKDALQEWTQAHYKSLPEYRLT 229 Query: 179 FRS-GPDHDPRFTVVVEISGLAPAQGMDCS 207 + + RFT V G +G S Sbjct: 230 ETNPIEADENRFTAQVWFKGQQLGEGQGRS 259 >gi|149921056|ref|ZP_01909515.1| ribonuclease III [Plesiocystis pacifica SIR-1] gi|149818060|gb|EDM77517.1| ribonuclease III [Plesiocystis pacifica SIR-1] Length = 244 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 16/222 (7%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 A + L +G+AFA LL ALT S ++ ++ S LEF GD +L L+ + Sbjct: 5 EASQLDPLMATLGHAFAQPQLLRVALTVGSWANENRDAGWPSNACLEFFGDAVLDLVAAD 64 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ F EG L+ SLVS + ++ AR +DL +I + + AD Sbjct: 65 ALWRRFPRLGEGALTRLRASLVSERSLAKAARSIDLGRWIYLGRGDEQRGARERDGTLAD 124 Query: 118 VVESLIAALYLD---GGIE---VAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFG 170 +E+++ A +LD G + A ++ + +R + + D K+ LQ+ A+ Sbjct: 125 ALEAVLGAAFLDAREAGGDPSVAAAQVFERLFGERVRSLAPEDGLDPKSRLQQLVQAERR 184 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEI--SGL---APAQGMDCS 207 +TP Y P DP + VE+ +G +G S Sbjct: 185 LTPVYVAIGEPPPADDPHWRARVELRPAGKPVEVLGEGEGRS 226 >gi|326330626|ref|ZP_08196930.1| ribonuclease III [Nocardioidaceae bacterium Broad-1] gi|325951467|gb|EGD43503.1| ribonuclease III [Nocardioidaceae bacterium Broad-1] Length = 183 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 50 ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 +LG++++ L+ EG+L+ ++V+A ++V + + L I++ Sbjct: 1 MLGVVVTETLYRTHPDLPEGKLAKLRAAVVNARALAEVGQAIGLGQHIKLGRGEEATGGR 60 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHA 167 SI +D VE++I A++L GGIEV+ V + + K+ D KT LQE A Sbjct: 61 EKASIVSDTVEAVIGAVHLSGGIEVSTVLVHRLFDPLIEKASDLGAGLDWKTSLQELAAE 120 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + PEY +T GPDH FT V + G+ SK+ Sbjct: 121 RALGVPEYVITDE-GPDHMKTFTAKVRVGDQLYGNGVGRSKK 161 >gi|307195788|gb|EFN77602.1| Endoribonuclease Dcr-1 [Harpegnathos saltator] Length = 1807 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 64/255 (25%), Positives = 99/255 (38%), Gaps = 45/255 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y LEK IGY F + S L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1550 YEELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 1609 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A + R +S L + F+ Sbjct: 1610 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENGHSISE 1669 Query: 112 ------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 DV ESL A+YLD G+ + + Y ++ Sbjct: 1670 EYYLIGKEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEIEQFS 1729 Query: 154 RRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K+ ++E AKFG D R V V++ G +G+ + Sbjct: 1730 TNVPKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFGKGSFKGIGRNY 1781 Query: 209 RAAEQVAAAEVLKRE 223 R A+ AA LK+ Sbjct: 1782 RIAKCTAAKCALKKL 1796 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 G+ + SL+ +ALT S+ + + ERLE +GD L I+T L+ +D+ EG+LS Sbjct: 1266 GHPGPSPSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSH 1323 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 + VS ++ R+ L + + D Sbjct: 1324 LRSKQVSNLNLYRLGRQKMLGESMIATKFEPHDNW 1358 >gi|300770264|ref|ZP_07080143.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33861] gi|300762740|gb|EFK59557.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33861] Length = 229 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 9/226 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63 L+ +G+ N L + A H S++ + +E S ERLEFLGD ILG +++ LLF + Sbjct: 3 KLKNLLGFVPENIRLYQMAFRHKSVATAIKEGAKNSNERLEFLGDAILGSVVAELLFKKY 62 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ + +VS +Q++R+L L I+ + S+ D E+L+ Sbjct: 63 PYKDEGFLTEMRSKIVSRANLNQLSRKLGLNELIQY-DARMISFPNKQGSLLGDAFEALV 121 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS---GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 A+YLD G +F+ + + + K+ L EW G ++ T Sbjct: 122 GAVYLDKGYTFTKSFLLNRIIKTHVDIQLLEVTETNFKSRLIEWCQ-HLGKDVQFLPTAN 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 + F++ + G G D +K++AE++AA + + I+ Sbjct: 181 PEGESSKMFSIEAIVEGEVCGIGRDFNKKSAEKLAAEKACEYLKIF 226 >gi|330889504|gb|EGH22165.1| ribonuclease III [Pseudomonas syringae pv. mori str. 301020] Length = 171 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 77/154 (50%), Gaps = 3/154 (1%) Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+L Sbjct: 1 FPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 60 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLD G+E A V + +L +D KT LQE+ ++ P Y+V Sbjct: 61 IGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDI 120 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V EI+ L ++G S+R AEQ Sbjct: 121 QGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 154 >gi|251772774|gb|EES53336.1| Ribonuclease III [Leptospirillum ferrodiazotrophum] Length = 366 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 46/231 (19%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFN 61 TL + +G F + +E+ALTH S SH +YERLEFLGDR++GL++S L N Sbjct: 14 ETLIRMLGLPFKDSFRIEEALTHRSASHERGRKKPIPNYERLEFLGDRVVGLIVSEYLLN 73 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + A EGE+ F+++VS +T + +AR +DL S++ + S+ AD E+ Sbjct: 74 MWPQATEGEVGQVFSTIVSTQTLASIARRMDLGSYMILGKGSNSSGERENASLLADTFEA 133 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ------RALKSGKFRR-------------------- 155 L AA+Y + G+E + ++ Q RA++S R Sbjct: 134 LTAAIYCEYGLETTRQILIPWFAQPLQEILRAIESAPPREPRRATVPEPAPSPVVTVTAP 193 Query: 156 ---------------DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 + K +Q+WA FG+ PE + SGP H RF + Sbjct: 194 RSATPSPRERPKHPPNYKLLIQKWAQQNFGLLPEVVLIEESGPSHQKRFVM 244 >gi|315225570|ref|ZP_07867380.1| ribonuclease III [Capnocytophaga ochracea F0287] gi|314944514|gb|EFS96553.1| ribonuclease III [Capnocytophaga ochracea F0287] Length = 252 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 9/224 (4%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFN 61 + Y+ +++ +G+ N S +A TH S + ++SYERLEFLGD ILG +I+ +F Sbjct: 21 IFYTKIKELLGFPPKNLSYYSEAFTHPSYQFQKATRKSYERLEFLGDAILGAVIADYIFT 80 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ + +V +Q+ +++ L F+R R+ +I ++ E+ Sbjct: 81 NAPEQDEGYLTKMRSKIVERRNLNQLGKDMRLLDFLRTKLTPRQLGN----NITGNLFEA 136 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178 LI A+YLD G + F+++ + K+ L EW Sbjct: 137 LIGAIYLDRGYKACFKFIERELILPYINIKNLEGKVISHKSLLIEWCQKHKLDFAFEAEE 196 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F V + G + + SK+ AE++AA + Sbjct: 197 DIEDCSETKFFVAKVHVQGFSVTRARSTSKKKAEEIAAKRACYK 240 >gi|330982653|gb|EGH80756.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 176 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 56/158 (35%), Positives = 78/158 (49%), Gaps = 3/158 (1%) Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF A+EG+LS LV ET + +AR DL ++R+ S K SI AD Sbjct: 2 LFERSPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADA 61 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 +E+LI A+YLD G+E A V + +L +D KT LQE+ ++ P Y+ Sbjct: 62 LEALIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYE 121 Query: 177 VTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 V G H F V EI+ L ++G S+R AEQ Sbjct: 122 VVDIQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 159 >gi|256820149|ref|YP_003141428.1| ribonuclease III [Capnocytophaga ochracea DSM 7271] gi|256581732|gb|ACU92867.1| ribonuclease III [Capnocytophaga ochracea DSM 7271] Length = 252 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 9/224 (4%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFN 61 + Y+ +++ +G+ N S +A TH S + ++SYERLEFLGD ILG +I+ +F Sbjct: 21 IFYTKIKELLGFPPKNLSYYSEAFTHPSYQFQKATRKSYERLEFLGDAILGAVIADYIFT 80 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ + +V +Q+ +++ L F+R R+ +I ++ E+ Sbjct: 81 NAPEQDEGYLTKMRSKIVERRNLNQLGKDMRLLDFLRTKLTPRQLGN----NITGNLFEA 136 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178 LI A+YLD G + F+++ + K+ L EW Sbjct: 137 LIGAIYLDRGYKACFKFIERELILPYINIKNLEGKVISHKSLLIEWCQKHKLDFAFEAEE 196 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F V + G + + SK+ AE++AA + Sbjct: 197 DIEDCSETKFFVAKVHVQGFSVTRARSTSKKKAEEIAAKRACYK 240 >gi|227538735|ref|ZP_03968784.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33300] gi|227241244|gb|EEI91259.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33300] Length = 229 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 9/226 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63 L+ +G+ N L + A H S++ + +E S ERLEFLGD ILG +++ LLF + Sbjct: 3 KLKNLLGFVPENVRLYQMAFRHKSVATAIKEGAKNSNERLEFLGDAILGSVVAELLFKKY 62 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ + +VS +Q++R+L L I+ + S+ D E+L+ Sbjct: 63 PYKDEGFLTEMRSKIVSRANLNQLSRKLGLNELIQY-DARMISFPNKQGSLLGDAFEALV 121 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS---GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 A+YLD G +F+ + + + K+ L EW G ++ T Sbjct: 122 GAVYLDKGYAFTKSFLLNRIIKTHVDIQLLEVTETNFKSRLIEWCQ-HLGKDVQFLPTAN 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 + F++ + G G D +K++AE++AA + + I+ Sbjct: 181 PEGESSKMFSIEAIVEGEVCGIGRDFNKKSAEKLAAEKACEYLKIF 226 >gi|86134672|ref|ZP_01053254.1| ribonuclease III [Polaribacter sp. MED152] gi|85821535|gb|EAQ42682.1| ribonuclease III [Polaribacter sp. MED152] Length = 245 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 106/221 (47%), Gaps = 12/221 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 Y L+ + ++ S +KA TH S+ S +YERLEFLGD ILG +I++ L+ Sbjct: 19 YFELKTLLNFSPKKISKYKKAFTHRSVQMTDSKGNPINYERLEFLGDSILGSVIASYLYK 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ + +VS E +++ ++L+L F++ + D +I ++ E+ Sbjct: 79 KVPTGSEGYLTQMRSKIVSREHLNELGKDLELIRFVKSNIDQNTVG----DNIHGNIFEA 134 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G A F+ + + + K + EW + +++ Sbjct: 135 LVGAIYLDRGYNYAQKFIYENVILPYVNIERLEGKITSYKGLIIEWCQKQKKKY-KFETY 193 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 SG + F+V V I G A+G SK+ AE+ A+ V Sbjct: 194 EDSGNEAIKHFSVKVSIDGEQVAKGRATSKKKAEEQASKRV 234 >gi|256372281|ref|YP_003110105.1| ribonuclease III [Acidimicrobium ferrooxidans DSM 10331] gi|256008865|gb|ACU54432.1| ribonuclease III [Acidimicrobium ferrooxidans DSM 10331] Length = 263 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 96/205 (46%), Gaps = 8/205 (3%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 + ++ +AL H S S +S ERLEFLGD ++ L++S L+ + EG L+ ++ Sbjct: 20 RDHPVVRQALVHKSASRDPLDSNERLEFLGDAVIELVVSDYLYRRYPDVDEGRLTQVRSA 79 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 LVS + V + L I V + + A+ VE+L A+YL GG +++ Sbjct: 80 LVSRRSLGSVGVQGGLLEAITVG-----QADALGPVLAANAVEALAGAVYLAGGFQLSVA 134 Query: 138 FVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 FV + D K+ L + P YKV SGPDHD R+ VVV++ Sbjct: 135 FVLAILGPSLERVDGDLVLGDYKSLLHQALAKLHHQPPRYKV-SWSGPDHDRRYRVVVQL 193 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVL 220 G A G S++ AEQ A + Sbjct: 194 PGGFEAAGEGASRKEAEQEACRLAI 218 >gi|194476942|ref|YP_002049121.1| putative ribonuclease III [Paulinella chromatophora] gi|171191949|gb|ACB42911.1| putative ribonuclease III [Paulinella chromatophora] Length = 246 Score = 171 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 107/220 (48%), Gaps = 10/220 (4%) Query: 9 LEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LEK G NR L +++ALTH+S ++E+LEFLGD +L L + L +H+ + Sbjct: 22 LEKLDGINLRNRDLAMVDEALTHTSA--ELGINHEKLEFLGDAVLRLAAAEHLLSHYPTL 79 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 G+ S LVS +++ + + IR+ + D + +++A+ E+LI AL Sbjct: 80 SVGQSSALRAQLVSDRWLAEIGESCGIETVIRIGAAASGDQAA-RQTLRAESTEALIGAL 138 Query: 127 Y--LDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 Y + +E ++ +W++ ++ + + + K+ LQEW+ A+ P Y+ + Sbjct: 139 YSSWENSLEPVNHWLSLHWQRSSIALLTDPYCYNWKSALQEWSQAEGLGLPNYRSKEINR 198 Query: 183 PDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 D RF V I +G ++R AEQ AA L Sbjct: 199 LHGDLSRFHSCVFIETKYLGEGFGGARREAEQQAARSALN 238 >gi|282901412|ref|ZP_06309337.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505] gi|281193691|gb|EFA68663.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505] Length = 238 Score = 171 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 12/223 (5%) Query: 5 RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + +L +++G + LL+ ALTH ++S S +YE+LEF+GD ++ L+ + +L+ Sbjct: 11 QLESLIQKLGLSANSPIKWPLLDLALTHPTVSESA--NYEQLEFVGDAVVRLVAAVVLWE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + G+ + + LVS +++ARE L ++ V+ D S AD E+ Sbjct: 69 SYPDCCVGDFAAIRSVLVSDRILARLAREYGLELYLLVAGSATADNVGQ-ESRLADAFEA 127 Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 L+ ALYL + + ++D ++++ ++ + + K LQEW A + V PEY+V Sbjct: 128 LLGALYLSTQNLILIRPWLDPHFQELAEQIRLDPAKLNYKAALQEWTQAGYKVLPEYRVV 187 Query: 179 FRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + P H+ F V + QG S +AAEQ AA Sbjct: 188 EVNQPQNPHER-FLAQVWLHEKILGQGKGRSIKAAEQEAAKVA 229 >gi|294155354|ref|YP_003559738.1| ribonuclease III [Mycoplasma crocodyli MP145] gi|291600141|gb|ADE19637.1| ribonuclease III [Mycoplasma crocodyli MP145] Length = 223 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 8/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTL 58 + + N + +A+THSS S + YERLEFLGD ++ ++S+ Sbjct: 2 LKCSNLTEFFHIHEIEPNNTKIYLQAITHSSFFSSSNKKNSYERLEFLGDSVIQFVVSSE 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF D +G+++ +V AET + ++ + L ++ + ++ T IQ DV Sbjct: 62 LF-KMDDLNQGKMTELRAKVVRAETLASISIAIGLIDILKTAPGGSQETIKNSTKIQCDV 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKV 177 E+++ A+Y+D G+++A FV K+ KQ + + +D K+ LQE+ +Y V Sbjct: 121 FEAIVGAIYVDQGLDIAYNFVFKFIKQYINGARQVENKDPKSRLQEYFQNFSKENIKYNV 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + F G G SK+ AE AA + LK+ Sbjct: 181 NQL----PNKIFQARAIHEGSVYGMGQGYSKKEAEIEAAIDALKKL 222 >gi|332020119|gb|EGI60563.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior] Length = 1979 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 64/255 (25%), Positives = 99/255 (38%), Gaps = 45/255 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y LEK IGY F + S L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1721 YEELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 1780 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A + R +S L + F+ Sbjct: 1781 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENGHSISE 1840 Query: 112 ------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 DV ESL A+YLD G+ + + Y ++ Sbjct: 1841 EYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEIEQFS 1900 Query: 154 RRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K+ ++E AKFG D R V V++ G +G+ + Sbjct: 1901 TNVPKSPIRELLELEPETAKFGRP-------EKLADG-RRVRVTVDVFGKGSFKGIGRNY 1952 Query: 209 RAAEQVAAAEVLKRE 223 R A+ AA LK+ Sbjct: 1953 RIAKCTAAKCALKKL 1967 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 G++ + SL+ +ALT S+ + + ERLE +GD L I+T L+ +D+ EG+LS Sbjct: 1437 GHSGPSPSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSH 1494 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 + VS ++ R+ L + + D Sbjct: 1495 LRSKQVSNLNLYRLGRQKMLGESMIATKFEPHDNW 1529 >gi|319952824|ref|YP_004164091.1| rnase iii [Cellulophaga algicola DSM 14237] gi|319421484|gb|ADV48593.1| RNAse III [Cellulophaga algicola DSM 14237] Length = 245 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 56/216 (25%), Positives = 101/216 (46%), Gaps = 12/216 (5%) Query: 11 KRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +G+ ++ +KA H S + +YERLEFLGD +LG +IS L+ + Sbjct: 24 RILGFKPKKLAVYKKAFLHRSANIRDEDGTPMNYERLEFLGDSMLGTIISKYLYTEVPTG 83 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ + +VS E +++ +EL+L ++ + R F +I +V E+L+ A+ Sbjct: 84 DEGYLTKMRSKIVSREHLNELGKELNLIHYV----ESRIPKSHFGDNIHGNVYEALVGAI 139 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD G + F+ K + + K+ L EW + + Y + +G Sbjct: 140 YLDRGYKYCEKFIHKSVIVPYVDIEQLEGKVISYKSLLIEWCQKQKK-SFYYDIYEDTGN 198 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 D F V + I+ ++ SK+ AE++A+ Sbjct: 199 DAVKHFAVKLHINKKIVSKARATSKKKAEEIASKRA 234 >gi|332706107|ref|ZP_08426179.1| RNAse III [Lyngbya majuscula 3L] gi|332355199|gb|EGJ34667.1| RNAse III [Lyngbya majuscula 3L] Length = 237 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 64/212 (30%), Positives = 107/212 (50%), Gaps = 14/212 (6%) Query: 5 RYSTLEKRIGY---AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +++G N SLL+ ALTH SIS ++YE+LEF+GD ++ L S L+ Sbjct: 11 QLEKLVQKLGLSKTTAVNWSLLDLALTHCSISAE--DNYEQLEFVGDAVIRLASSEWLWE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ ++ GE + + LVS SQ+AR L ++ VS+ D TS AD E+ Sbjct: 69 NYPNSSVGEFAAIRSVLVSDRILSQLARSYGLERYLLVSNSAAGDKVGE-TSRLADAFEA 127 Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ ALYL +E+ ++D + ++ ++ R++ K LQEW A + + P+Y +T Sbjct: 128 ILGALYLSTHTLELVRPWLDPHLQKLTTEIRQDPARQNYKDALQEWTQAHYKLLPKYHLT 187 Query: 179 F---RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 G + RFT V + +G S Sbjct: 188 ENLQVHGA--NNRFTAQVWLQNRQLGEGTGRS 217 >gi|307190121|gb|EFN74275.1| Endoribonuclease Dcr-1 [Camponotus floridanus] Length = 1976 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 64/255 (25%), Positives = 99/255 (38%), Gaps = 45/255 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y LEK IGY F + S L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1717 YDELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 1776 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A + R +S L + F+ Sbjct: 1777 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENGHSISE 1836 Query: 112 ------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 DV ESL A+YLD G+ + + Y ++ Sbjct: 1837 EYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEIEQFS 1896 Query: 154 RRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K+ ++E AKFG D R V V++ G +G+ + Sbjct: 1897 TNVPKSPIRELLELEPETAKFGRP-------EKLADG-RRVRVTVDVFGKGSFKGIGRNY 1948 Query: 209 RAAEQVAAAEVLKRE 223 R A+ AA LK+ Sbjct: 1949 RIAKCTAAKCALKKL 1963 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 SL+ +ALT S+ + + ERLE +GD L I+T L+ +D+ EG+LS + V Sbjct: 1439 PSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQV 1496 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVC 108 S ++ R+ L + + D Sbjct: 1497 SNLNLYRLGRQKMLGESMIATKFEPHDNW 1525 >gi|213963479|ref|ZP_03391733.1| ribonuclease III [Capnocytophaga sputigena Capno] gi|213953887|gb|EEB65215.1| ribonuclease III [Capnocytophaga sputigena Capno] Length = 252 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 9/224 (4%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFN 61 + Y+ ++ +G+A N S +A TH S + ++SYERLEFLGD ILG +I+ +F Sbjct: 21 IFYNKIKNLLGFAPKNLSYYSEAFTHPSYQFQKATRKSYERLEFLGDAILGAVIADYIFT 80 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ + +V +Q+ +++ L F+R R+ +I ++ E+ Sbjct: 81 NAPEQDEGYLTKMRSKIVERRNLNQLGKDMGLLDFLRTKLTPRQLGN----NITGNLFEA 136 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178 LI A+YLD G + F+++ + K+ L EW Sbjct: 137 LIGAIYLDRGYKACFRFIERELILPHINIKNLEGKVISHKSLLIEWCQKHKLDFAFEAEE 196 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F V + G + + SK+ AE++AA + Sbjct: 197 DMEDRSETKYFVAKVHVQGFSVTRARSTSKKKAEEIAAKRACYK 240 >gi|62320294|dbj|BAD94606.1| CAF protein [Arabidopsis thaliana] Length = 690 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 30/237 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + ++ + LE+ + Y F + LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 335 LKSIDFVRLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 394 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFM-------- 111 + S G L+ + V+ E ++VA + L ++R S L K + F+ Sbjct: 395 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESS 454 Query: 112 --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 + D+VES+ A++LD G + + V + Q + Sbjct: 455 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMH 514 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ELQE + EYK RSG TV V I G+ + K+ A++ Sbjct: 515 PVRELQERCQQQAEGL-EYKA-SRSGN----TATVEVFIDGVQVGVAQNPQKKMAQK 565 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 126 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 182 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 183 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 213 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214 L + K P Y+ GP H RFT V ++ + + S + A+ Sbjct: 617 LNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDS 676 Query: 215 AAAEVLK 221 AA +L+ Sbjct: 677 AAVLLLE 683 >gi|258648277|ref|ZP_05735746.1| ribonuclease III [Prevotella tannerae ATCC 51259] gi|260852193|gb|EEX72062.1| ribonuclease III [Prevotella tannerae ATCC 51259] Length = 284 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 13/226 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y + +G+ + A HSS + + + ERLEFLGD +L +++S ++F Sbjct: 20 YRKVYNILGFYPHDIEYYRIAFAHSSSEYKGRNGRTVNNERLEFLGDAVLEMVVSDIVFR 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F+ +EG L+ + +V T +Q+A E ++ +R S S ++I + E+ Sbjct: 80 RFERKREGFLTGTRSKIVQRATLNQLAEETGISKLLRTS----MRATSHNSNIGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178 ALYLD G A F K + + + K++L EW+ E+K+ Sbjct: 136 FFGALYLDRGYRAAYRFFAKRILGVHINLEAVAKKEENFKSKLLEWSQKNRLRA-EFKLD 194 Query: 179 FRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + P F V + GL +G SK+ ++Q AA L + Sbjct: 195 RTENNASNGPVFYTTVRLEGLEAGKGSGYSKKESQQKAAKAALMKL 240 >gi|242076428|ref|XP_002448150.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor] gi|241939333|gb|EES12478.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor] Length = 698 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 24/244 (9%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + S LE+ IGY F ++ LL +A H S + Y+R+EFLGD +L L+++ L+ Sbjct: 247 MNYMNISELEELIGYTFKHKGLLLQAFVHPSFNKHSGGCYQRMEFLGDAVLDYLMASYLY 306 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM-------- 111 + + K G+L+ + ++ + + VA + + ++ S L + F Sbjct: 307 SAYPDLKPGQLTDLKSLALNNNSFAYVAVKKSIHKYLIKDSKSLTAAINKFQNYVNLSSS 366 Query: 112 ----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160 + D+VES + A+ LD G + + + + L D E Sbjct: 367 EKDLLEEPTCPKVLGDIVESCVGAVLLDSGFNLNHVWKLMLMLLKPILSFCGMHIDPMRE 426 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEV 219 L+E K T +G H V V I G + + + + A +VAA E Sbjct: 427 LREICQYNGFELGLPKPTEDNGEFHVK---VEVNIDGKMISCTAANRNSKDARKVAAQEA 483 Query: 220 LKRE 223 L + Sbjct: 484 LLKL 487 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 40/140 (28%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98 ERLE LGD L ++ F ++ EG+L+ R + +VS +++ +L +IR Sbjct: 81 ERLEVLGDAFLKYVVGRHNFISYEGLDEGQLTRRRSDIVSNSNLYELSIRRNLQVYIRDQ 140 Query: 99 ---------VSSDLRKDVCSFMTSIQ-----------------------------ADVVE 120 + + + ADVVE Sbjct: 141 HFEPTQFFALGRPCKVVCNPDREATLHPKNIDPDRRENCNLRCTKSHHWLHRKTIADVVE 200 Query: 121 SLIAALYLDGGIEVAGTFVD 140 SL+ A ++ G + A F+ Sbjct: 201 SLLGAFLVECGFKAAFAFLR 220 Score = 41.2 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 24/52 (46%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 QR R+ A++ L E A + P++++ GP H +FT V I Sbjct: 600 QREYHGDMVRKTARSFLYELCAANYWKPPDFELCKGEGPSHLRKFTCKVLIQ 651 >gi|332878384|ref|ZP_08446107.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683649|gb|EGJ56523.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 262 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 9/224 (4%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFN 61 + Y+ ++ +GYA N S +A TH S + ++SYERLEFLGD ILG +I+ +F Sbjct: 31 IFYNKMKDLLGYAPKNLSFYSEAFTHPSYQYQKATRKSYERLEFLGDAILGAVIADYIFT 90 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ + +V +Q+ EL L SF+R + +I ++ E+ Sbjct: 91 NAPEQDEGYLTKMRSKIVERRNLNQLGEELQLLSFLRT----KLTPKQLGNNITGNLFEA 146 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178 LI A+YLD G + F+++ + K+ L EW Sbjct: 147 LIGAIYLDKGYKTCFKFIERKLILPYINIKNLEEKVISHKSLLIEWCQKHKRDFSFEAEE 206 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F V + G + + SK+ AE+ AA + Sbjct: 207 DVEDRSETKYFVAKVYVEGFSVTRARATSKKRAEESAAKRTCYK 250 >gi|47225092|emb|CAF98719.1| unnamed protein product [Tetraodon nigroviridis] Length = 290 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 63/193 (32%), Positives = 95/193 (49%), Gaps = 8/193 (4%) Query: 37 QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 +R+EFLGD I+ L+ + LF HF EG L++ +SLV+ T ++VA EL + F Sbjct: 57 SGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF 116 Query: 97 IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFR 154 +++D K T AD++ES IAALY+D +E TF++ + R + + Sbjct: 117 A-ITNDKTKRPVVLRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDW 175 Query: 155 RDAKTELQEWA-----HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 D K++LQ+ K P YK GP H +TV V G G S + Sbjct: 176 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGDRIGCGKGPSIQ 235 Query: 210 AAEQVAAAEVLKR 222 AE AA + L++ Sbjct: 236 QAEMGAAMDALEK 248 >gi|110520367|gb|ABG74922.1| Dicer-like 1b protein [Physcomitrella patens] Length = 1695 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 30/247 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ +S+L+K +G+ F RSLL +A+TH+S Y+RLEF+GD +L LI+ LF Sbjct: 1339 MRSIDFSSLQKNVGHEFRERSLLVEAITHASRPSLGVPCYQRLEFVGDAVLDHLITRYLF 1398 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111 + + G L+ + V+ E ++VA + +R S + Sbjct: 1399 FKYTNLPPGRLTDLRAAAVNNENFARVAVKHSYHLHLRHGSTALETQIRNFVNDIHSELD 1458 Query: 112 --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 + D+ ES+ AL+LD ++ + V + Q + Sbjct: 1459 KPGVNSFGLGDFKAPKVLGDIFESIAGALFLDARLDTHQVWKVFEPLLQPMVSPETLPIH 1518 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 LQE + EYKV+ TV V + G+ K+ A+++ A Sbjct: 1519 PVRGLQERCQQEAEGL-EYKVSRAESVA-----TVEVYVDGVQIGSTQSAQKKMAQKLGA 1572 Query: 217 AEVLKRE 223 L + Sbjct: 1573 RNALVKL 1579 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 ALT +S SYER E L D L ++S LF F S EG+L+ +VS Sbjct: 1136 ALTAAS--GQETFSYERAELLSDAYLEWVVSHRLFLKFPSKHEGQLTRMRQKIVSNSVLY 1193 Query: 86 QVARELDLASFIR 98 Q A E L S+I+ Sbjct: 1194 QHALEKGLQSYIQ 1206 Score = 42.4 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 15/32 (46%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + P+YK SGP H +FT+ V + Sbjct: 1617 LCLKRQWPMPQYKCVLESGPAHAKKFTLSVRV 1648 >gi|189502546|ref|YP_001958263.1| hypothetical protein Aasi_1206 [Candidatus Amoebophilus asiaticus 5a2] gi|189497987|gb|ACE06534.1| hypothetical protein Aasi_1206 [Candidatus Amoebophilus asiaticus 5a2] Length = 241 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 7/210 (3%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 N SL AL HSS + + S ERLEFLGD +L L+++ LF + +EG L+ Sbjct: 34 HPHNLSLYRLALQHSS-AKIEENSNERLEFLGDAVLSLVVAEYLFKKYPLQEEGFLTEIR 92 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 + +V+ + ++A+ + + + D R + + + +E+ I A+YLD G + Sbjct: 93 SRIVNRASLGELAKRIGMDELLTY--DTRSVNHHNIKFVYGNALEAFIGAVYLDQGYALC 150 Query: 136 GTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 F+ + + + K+++ WA ++ + F V Sbjct: 151 AQFIVDRLLKIHVDLETIVLTDNNYKSKIIAWAQKNRK-HIQFILITEKRIKGVREFVVQ 209 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + G +G+ +K+ AEQ+AA E LKR Sbjct: 210 LLLEGEVYGEGVGKTKKQAEQMAAQESLKR 239 >gi|332189100|gb|AEE27221.1| endoribonuclease Dicer [Arabidopsis thaliana] Length = 1910 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 30/237 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + ++ + LE+ + Y F + LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1555 LKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1614 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFM-------- 111 + S G L+ + V+ E ++VA + L ++R S L K + F+ Sbjct: 1615 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESS 1674 Query: 112 --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 + D+VES+ A++LD G + + V + Q + Sbjct: 1675 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMH 1734 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ELQE + EYK RSG TV V I G+ + K+ A++ Sbjct: 1735 PVRELQERCQQQAEGL-EYKA-SRSGN----TATVEVFIDGVQVGVAQNPQKKMAQK 1785 Score = 71.6 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 1346 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1402 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 1403 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1433 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214 L + K P Y+ GP H RFT V ++ + + S + A+ Sbjct: 1837 LNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDS 1896 Query: 215 AAAEVLK 221 AA +L+ Sbjct: 1897 AAVLLLE 1903 >gi|15223286|ref|NP_171612.1| DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA binding / protein binding / ribonuclease III [Arabidopsis thaliana] gi|34922211|sp|Q9SP32|DCL1_ARATH RecName: Full=Endoribonuclease Dicer homolog 1; AltName: Full=Dicer-like protein 1; Short=AtDCL1; AltName: Full=Protein ABNORMAL SUSPENSOR 1; AltName: Full=Protein CARPEL FACTORY; AltName: Full=Protein SHORT INTEGUMENTS 1; AltName: Full=Protein SUSPENSOR 1 gi|11559645|gb|AAG38019.1|AF292940_1 short integuments 1 [Arabidopsis thaliana] gi|11559647|gb|AAG38020.1|AF292941_1 short integuments 1 [Arabidopsis thaliana] gi|332189099|gb|AEE27220.1| endoribonuclease Dicer [Arabidopsis thaliana] Length = 1909 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 30/237 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + ++ + LE+ + Y F + LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1554 LKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1613 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFM-------- 111 + S G L+ + V+ E ++VA + L ++R S L K + F+ Sbjct: 1614 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESS 1673 Query: 112 --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 + D+VES+ A++LD G + + V + Q + Sbjct: 1674 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMH 1733 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ELQE + EYK RSG TV V I G+ + K+ A++ Sbjct: 1734 PVRELQERCQQQAEGL-EYKA-SRSGN----TATVEVFIDGVQVGVAQNPQKKMAQK 1784 Score = 71.3 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 1345 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1401 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 1402 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1432 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214 L + K P Y+ GP H RFT V ++ + + S + A+ Sbjct: 1836 LNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDS 1895 Query: 215 AAAEVLK 221 AA +L+ Sbjct: 1896 AAVLLLE 1902 >gi|30350181|gb|AAP31489.1| putative ribonuclease III [Western X phytoplasma] Length = 228 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 7/207 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYE---RLEFLGDRILGLLISTLLF 60 + L KR+ N SL ALTHSS ++ + RLEFLGD ++ +++ L+ Sbjct: 1 MSIKQLFKRLNIKPKNISLFINALTHSSYANENNAKHNNNERLEFLGDSVINFFMASYLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG ++ + V ++ A E+ L +I + +K SI D E Sbjct: 61 KNNKD-DEGVMTKKRAQAVCVDSLLIYAEEIQLKKYIYLGKGEKKRSV-HNYSIVTDAFE 118 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +L A+YLD G + A + L D KT+LQE K YK+ Sbjct: 119 ALFGAIYLDLGFKQAQKTFYQVVLP-CLNKIINIIDFKTQLQELVQTK-KQNITYKIISE 176 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS 207 G H+ F V + +G + Sbjct: 177 KGLAHEKEFVSEVYLGKEWLGKGNGKT 203 >gi|6102610|gb|AAF03534.1|AF187317_1 CAF protein [Arabidopsis thaliana] Length = 1909 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 30/237 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + ++ + LE+ + Y F + LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1554 LKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1613 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFM-------- 111 + S G L+ + V+ E ++VA + L ++R S L K + F+ Sbjct: 1614 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESS 1673 Query: 112 --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 + D+VES+ A++LD G + + V + Q + Sbjct: 1674 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMH 1733 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ELQE + EYK RSG TV V I G+ + K+ A++ Sbjct: 1734 PVRELQERCQQQAEGL-EYKA-SRSGN----TATVEVFIDGVQVGVAQNPQKKMAQK 1784 Score = 71.3 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 1345 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1401 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 1402 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1432 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214 L + K P Y+ GP H RFT V ++ + + S + A+ Sbjct: 1836 LNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDS 1895 Query: 215 AAAEVLK 221 AA +L+ Sbjct: 1896 AAVLLLE 1902 >gi|282897359|ref|ZP_06305361.1| Ribonuclease III [Raphidiopsis brookii D9] gi|281198011|gb|EFA72905.1| Ribonuclease III [Raphidiopsis brookii D9] Length = 240 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 12/223 (5%) Query: 5 RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + +L +++G + LL+ ALTH ++S S +YE+LEF+GD ++ L+ + +L+ Sbjct: 11 QLESLIQKLGLSANSPIKWPLLDLALTHPTVSESA--NYEQLEFVGDAVVRLVAAVVLWE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + G+ + + LVS +++ARE DL ++ V+ D S AD E+ Sbjct: 69 SYPDCCVGDFAAIRSVLVSDRILARLAREYDLELYLLVAGSATADNVGQ-ESRLADAFEA 127 Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 L+ ALYL + + ++D ++++ ++ R + K LQEW A + V PEY+V Sbjct: 128 LLGALYLSTQNLILIRPWLDPHFQELAEQIRLDPARLNYKAALQEWTQAGYKVLPEYRVV 187 Query: 179 F--RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +S H+ F V + QG S +AAEQ AA Sbjct: 188 EVNQSQNAHER-FLAQVWLHEKILGQGKGRSIKAAEQEAAKVA 229 >gi|313675278|ref|YP_004053274.1| RNAse iii [Marivirga tractuosa DSM 4126] gi|312941976|gb|ADR21166.1| RNAse III [Marivirga tractuosa DSM 4126] Length = 243 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 105/227 (46%), Gaps = 11/227 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61 + ++ +GY L HSS++ + ++ S ERLE+LGD ILG +++ LF Sbjct: 20 VAAVKSIVGYKPFRLELFRLVTQHSSVAKTLPNGFRASNERLEYLGDAILGAVVADYLFK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ + +V+ E+ S +A+++ ++ + SD + F SI D++E+ Sbjct: 80 KYPFKDEGFLTEIRSRIVNRESLSLLAKKIGISQMLE--SDFSRSRYHFK-SIYGDMMEA 136 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 I A+Y+D G + F+ + + K+ L EW+ + + + + Sbjct: 137 FIGAVYIDRGYKYCQKFIINKLLIPHFDLDEIIENNTNYKSILIEWSQKENK-SIRFDIE 195 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + F + ++ ++G +K+ AEQ AA + ++ + Sbjct: 196 DQKQEGSKKEFRAAIFVNSEKISKGAGLNKKKAEQNAAFKACRKLNL 242 >gi|58040241|ref|YP_192205.1| ribonuclease III [Gluconobacter oxydans 621H] gi|58002655|gb|AAW61549.1| Ribonuclease III [Gluconobacter oxydans 621H] Length = 174 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 1/170 (0%) Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ++ L + +EG L R LVS +++A ++ L++ +++S ++SI Sbjct: 1 MAEWLLERYPDEQEGALGPRHAHLVSRTVLAEIADQVGLSASLQISPHEEDAGIRRLSSI 60 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 +AD +E+L+ ALYLDGG+E A V +YW+ R + + ++ KT LQE+ ++ P Sbjct: 61 RADAMEALLGALYLDGGLEPARRVVHQYWQSRIESADRPHKEPKTLLQEYMLSQGLPLPH 120 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 Y++ GP H P F V V G G SKR AE AA +LK G Sbjct: 121 YELLSSDGPSHAPVFRVSVTTMGHT-GTGEAGSKRLAESAAATALLKHLG 169 >gi|86608239|ref|YP_477001.1| ribonuclease III [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556781|gb|ABD01738.1| ribonuclease III [Synechococcus sp. JA-2-3B'a(2-13)] Length = 240 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 22/218 (10%) Query: 6 YSTLEKRIGYAFANRSLLEK--------ALTHSSISHSYQESYERLEFLGDRILGLLIST 57 L R+G F + +LLE+ AL H S+ + + +RLE LGD +L +L++ Sbjct: 12 LEHLLARLG--FRDPALLEQLRWDLLDQALIHPSL--DGRRNNDRLELLGDSVLRILVTE 67 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQA 116 LF + GEL+ + L S +++A L ++ V S + D A Sbjct: 68 FLFQSYPHLSVGELTAIRSDLTSDAYLAELADLHGLDRYLEVGSSSQNDLAGRGRR--LA 125 Query: 117 DVVESLIAALYLDGGIEV---AGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGV 171 D E+L+ A YL GI ++D Y +R + RR+ K LQE +G Sbjct: 126 DAFEALLGAFYLSWGIYTLPRLHPWLDPYLHRRVEQWFQDPTRRNPKAALQELTQRLWGS 185 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 PEY++ +H P FT+ V G +G SK+ Sbjct: 186 LPEYRLVAAQ--EHPPHFTMEVWGQGRCWGRGEGRSKK 221 >gi|226528435|ref|NP_001141713.1| hypothetical protein LOC100273842 [Zea mays] gi|194705648|gb|ACF86908.1| unknown [Zea mays] Length = 329 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 103/244 (42%), Gaps = 27/244 (11%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58 MSA + +E +GY F ++SL+E ALTH S + ++YERLE+LGD +L L+S Sbjct: 43 MSAKDVTAIEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSRE 102 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM------ 111 +F + + + G L+ + V E ++VA L F+R + L+ +C F+ Sbjct: 103 VFRTYRTLQPGPLTRLRAANVDTEKLARVAVHRGLHRFLRHKAPKLQDQICFFIEEMRKY 162 Query: 112 ----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160 + D+VESLI A+YLD + + V + + + +E Sbjct: 163 PVHSNGLLDPPKVLCDIVESLIGAIYLDSNFDQEEVWRVFRTLADPLIGLETLGKHPVSE 222 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEV 219 L E+ + D V V I G + K A+ AA + Sbjct: 223 LFEFCQKTHRG------VKFLKDEWDKSLKVQVLIDGEVVGSAIYGPKKEIAQNRAAKDA 276 Query: 220 LKRE 223 L + Sbjct: 277 LDKL 280 >gi|75907020|ref|YP_321316.1| ribonuclease III [Anabaena variabilis ATCC 29413] gi|75700745|gb|ABA20421.1| RNAse III [Anabaena variabilis ATCC 29413] Length = 242 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 61/212 (28%), Positives = 105/212 (49%), Gaps = 10/212 (4%) Query: 5 RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + +L +++G LL+ ALTH ++S S +YE+LEF+GD ++ L + +L+ Sbjct: 11 QLESLVRKLGLPTTAPIKWELLDLALTHPTVSESA--NYEQLEFVGDAVVRLAAAVMLWE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + G+ + + LVS +Q+ARE L + V+ D S AD E+ Sbjct: 69 TYPDCPVGDFAAIRSVLVSDRILAQLAREYGLELHLLVAGSATSDKIGQ-ESRLADAFEA 127 Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ ALYL +E+ ++D +++Q A ++ R + K LQEW A+F V PEY+V Sbjct: 128 VLGALYLSTSNLELIRPWLDHHFRQLAAEIRLDPARLNYKAALQEWTQAQFKVLPEYRVV 187 Query: 179 FRSGPDHDP-RFTVVVEISGLAPAQGMDCSKR 209 + + RF V + G +G S + Sbjct: 188 EINQANRTQERFAAEVWLHGNKLGEGKGRSIK 219 >gi|323126809|gb|ADX24106.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 151 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 1/147 (0%) Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 +V E+ + +R ++I++ K +I D+ E+ + AL LD G++ Sbjct: 2 IVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVDEVRR 61 Query: 138 FVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 F+ + + K + +D KT LQE +K + +Y+V GP H +F V V ++ Sbjct: 62 FLQQVMIPQVEKGNFEKVKDYKTCLQELLQSKGDIAIDYQVISEKGPAHAKQFEVAVFVN 121 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++G+ SK+ AEQ AA L + Sbjct: 122 EEVLSKGLGKSKKMAEQDAAKNALVQL 148 >gi|212550552|ref|YP_002308869.1| ribonuclease III [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|229564347|sp|B6YQI6|RNC_AZOPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|212548790|dbj|BAG83458.1| ribonuclease III [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 261 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 107/230 (46%), Gaps = 16/230 (6%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57 Y L + +G+ N S+ EKAL H S S + ++ ERLEFLGD I +I+ Sbjct: 16 KKESYFALYRMLGFPPKNFSIYEKALLHKSSSKRDENGCYQNNERLEFLGDAIFNAIIAV 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +L+ F + EG L+ + +V +T ++A +L + I +S+ ++ I + Sbjct: 76 ILYKKFPTNDEGFLTNTRSKIVKRDTLDKIAYQLGINHLIMISAKVKNH-----KHIMGN 130 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPE 174 +E+ I A+YLD G FV+K + R + K++L EW K + + Sbjct: 131 TLEAFIGAIYLDKGYLKTKEFVEKRIINPYIDIDTLVREEVNFKSKLFEWCQ-KHKILLQ 189 Query: 175 YKVTFRSGPDHDP--RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 ++ + D++ F + ++ G+ SKR ++Q A+ ++ Sbjct: 190 FQTL-ENFTDNNRNVVFQIQALLNNHIAGIGIGYSKRESQQHASQMTWRK 238 >gi|195624966|gb|ACG34313.1| endoribonuclease Dicer [Zea mays] Length = 329 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 103/244 (42%), Gaps = 27/244 (11%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58 MSA + +E +GY F ++SL+E ALTH S + ++YERLE+LGD +L L+S Sbjct: 43 MSAKDVTAIEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSRE 102 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM------ 111 +F + + + G L+ + V E ++VA L F+R + L+ +C F+ Sbjct: 103 VFRTYRTLQPGPLTRLRAANVDTEKLARVAVHRGLYRFLRHKAPKLQDQICFFIEEMRKY 162 Query: 112 ----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160 + D+VESLI A+YLD + + V + + + +E Sbjct: 163 PVHSNGLLDPPKVLCDIVESLIGAIYLDSNFDQEEVWRVFRTLADPLIGLETLGKHPVSE 222 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEV 219 L E+ + D V V I G + K A+ AA + Sbjct: 223 LFEFCQKTHRG------VKFLKDEWDKSLKVQVLIDGEVVGSAIYGPKKEIAQNRAAKDA 276 Query: 220 LKRE 223 L + Sbjct: 277 LDKL 280 >gi|172355315|ref|NP_001116485.1| endoribonuclease Dicer-1 [Apis mellifera] gi|170181362|gb|ACB11577.1| dicer-1 CG4792-PA-like protein [Apis mellifera] Length = 1946 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 64/256 (25%), Positives = 101/256 (39%), Gaps = 47/256 (18%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y LEK IGY F + S L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1695 YEELEKNIGYKFHDISYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDTR 1754 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A + R +S L + F+ Sbjct: 1755 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSIVINRFVRIQEENGHSIGE 1814 Query: 112 ------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 DV ESL A+YL G+ + + Y+ + +F Sbjct: 1815 EYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLGSGMSLDAVW-SVYYAIMKNEIEQF 1873 Query: 154 RRD-AKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K+ ++E AKFG D R V V++ G +G+ + Sbjct: 1874 STNVPKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFGKGSFKGIGRN 1925 Query: 208 KRAAEQVAAAEVLKRE 223 R A+ AA LK+ Sbjct: 1926 YRIAKCTAAKCALKKL 1941 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 SL+ +ALT S+ + + ERLE +GD L I+T L+ +D+ EG+LS + V Sbjct: 1417 PSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQV 1474 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVC 108 S ++ R+ L + + D Sbjct: 1475 SNLNLYRLGRQKMLGESMIATKFEPHDNW 1503 >gi|125555283|gb|EAZ00889.1| hypothetical protein OsI_22916 [Oryza sativa Indica Group] Length = 276 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 27/244 (11%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58 M + +E +GY F +++L+E+ALTH S + Y+ +YERLE+LGD +L ++S Sbjct: 34 MGPGEVAAVESLLGYEFRDKALVEQALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSRE 93 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----------------- 101 +F + + G L+ + V E ++VA L F+R + Sbjct: 94 VFLTYGQLQPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMY 153 Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160 + + + DVVESLI A+Y D + V + + + +E Sbjct: 154 PIHSNGLLDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGKHPVSE 213 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEV 219 L E+ + D TV V I G + K+ A+ AA Sbjct: 214 LFEFCQKTRRG------VKIVKDEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAKAA 267 Query: 220 LKRE 223 L + Sbjct: 268 LDKL 271 >gi|297848414|ref|XP_002892088.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp. lyrata] gi|297337930|gb|EFH68347.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp. lyrata] Length = 1962 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 103/237 (43%), Gaps = 30/237 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + ++ + LE+ + + F + LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1607 LKSIDFVGLERALKFEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1666 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFM-------- 111 + S G L+ + V+ E ++VA + L ++R S L K + F+ Sbjct: 1667 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESS 1726 Query: 112 --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 + D+VES+ A++LD G + + V + Q + Sbjct: 1727 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMH 1786 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ELQE + EYK RSG TV V I G+ + K+ A++ Sbjct: 1787 PVRELQERCQQQAEGL-EYKA-SRSGN----TATVEVFIDGVQVGVAQNPQKKMAQK 1837 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 1398 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRYLFLKYPQKH 1454 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 1455 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1485 Score = 44.7 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214 L + K P Y+ GP H RFT V ++ + + S + A+ Sbjct: 1889 LNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDS 1948 Query: 215 AAAEVLK 221 AA +L+ Sbjct: 1949 AAVLLLQ 1955 >gi|56752450|ref|YP_173151.1| ribonuclease III [Synechococcus elongatus PCC 6301] gi|81300454|ref|YP_400662.1| RNAse III [Synechococcus elongatus PCC 7942] gi|56687409|dbj|BAD80631.1| ribonuclease III [Synechococcus elongatus PCC 6301] gi|81169335|gb|ABB57675.1| RNAse III [Synechococcus elongatus PCC 7942] Length = 247 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 8/195 (4%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + +++ALTH S + ++ Y+RLEFLGD +L L I+ L H+ G+ S + L Sbjct: 36 DWQQIDRALTHPSAA---EDHYDRLEFLGDAVLRLAIADFLDRHYPDLSVGDCSALRSEL 92 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGT 137 S T + +A +L +RV D + A+ E+L+ ALYL ++ + Sbjct: 93 GSDRTLAAIAASYNLERVLRVGKTAANDRAGQQSR-LAEAFEALLGALYLSQRNLDPIRS 151 Query: 138 FVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVE 194 ++D + +QRA R + K LQEW ++ PEY+ RS DP F V Sbjct: 152 WLDPHLQQRATAMLQDPTRGNYKAALQEWTLQRYQELPEYRTEQRSDACGDPAAFAAEVW 211 Query: 195 ISGLAPAQGMDCSKR 209 G G+ S + Sbjct: 212 FRGEKLGSGVGRSIK 226 >gi|115468004|ref|NP_001057601.1| Os06g0358800 [Oryza sativa Japonica Group] gi|75254269|sp|Q69KJ0|RTL3_ORYSJ RecName: Full=Ribonuclease 3-like protein 3; AltName: Full=Ribonuclease III-like protein 3; Short=RNase III-like protein 3 gi|51091751|dbj|BAD36550.1| CAF protein-like [Oryza sativa Japonica Group] gi|113595641|dbj|BAF19515.1| Os06g0358800 [Oryza sativa Japonica Group] gi|125597181|gb|EAZ36961.1| hypothetical protein OsJ_21299 [Oryza sativa Japonica Group] Length = 299 Score = 167 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 27/244 (11%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58 M + +E +GY F +++L+E+ALTH S + Y+ +YERLE+LGD +L ++S Sbjct: 34 MGPGEVAAVESLLGYEFRDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSRE 93 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----------------- 101 +F + + G L+ + V E ++VA L F+R + Sbjct: 94 VFLTYGQLQPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMY 153 Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160 + + + DVVESLI A+Y D + V + + + +E Sbjct: 154 PIHSNGLLDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGKHPVSE 213 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEV 219 L E+ + D TV V I G + K+ A+ AA Sbjct: 214 LFEFCQKTRRG------VKIVKDEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAKAA 267 Query: 220 LKRE 223 L + Sbjct: 268 LDKL 271 >gi|294787403|ref|ZP_06752656.1| ribonuclease III [Parascardovia denticolens F0305] gi|315227028|ref|ZP_07868815.1| ribonuclease III [Parascardovia denticolens DSM 10105] gi|294484759|gb|EFG32394.1| ribonuclease III [Parascardovia denticolens F0305] gi|315119478|gb|EFT82611.1| ribonuclease III [Parascardovia denticolens DSM 10105] Length = 290 Score = 167 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 63/263 (23%), Positives = 109/263 (41%), Gaps = 51/263 (19%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65 L +G + + LL +ALTH S ++ + +YERLEFLGD +L L+ + L+ + Sbjct: 20 ELFDELGVSIS-PDLLIEALTHRSFANEHPGTRNYERLEFLGDAVLELVATETLYKAHPN 78 Query: 66 AKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG++S + +VS E+ +++AR +L ++ I + R+D + SI D+VESL Sbjct: 79 YTEGQMSKIRSKVVSEESLAEIARDKLKISPMILLGIGERRDGGADKDSILCDIVESLFG 138 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++++ GIE A + + + D KT + AH Y++ G Sbjct: 139 AIFVEYGIETARKVIHRLLDDNLHYYTAEGPALDWKTAIVVKAHELDLGEVNYQM-EVGG 197 Query: 183 PDHDPRFTVVVEI---------------------------------------SGLAPAQ- 202 P + FT + + +G + Sbjct: 198 PSNRLEFTAHLFLVKEPDADTAQGKSTATAENMASAGNKAHSENPESSVADDAGKTSGRQ 257 Query: 203 ----GMDCSKRAAEQVAAAEVLK 221 G SKR A+ AA + + Sbjct: 258 EISVGHGSSKRKAQLDAAEKAWR 280 >gi|94469418|gb|ABF20197.1| ribonuclease III [Ehrlichia ruminantium] Length = 145 Score = 167 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 79/139 (56%) Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 ++A+ ++L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +W Sbjct: 1 LVEIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFW 60 Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 K A +DAKT LQEWA +K P Y + +SGPDH+P FTV V I+ + Sbjct: 61 KNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLRA 120 Query: 204 MDCSKRAAEQVAAAEVLKR 222 +K+ AEQ AA+ +L + Sbjct: 121 TGHNKKLAEQKAASLMLAK 139 >gi|313204618|ref|YP_004043275.1| ribonuclease iii [Paludibacter propionicigenes WB4] gi|312443934|gb|ADQ80290.1| ribonuclease III [Paludibacter propionicigenes WB4] Length = 277 Score = 167 bits (425), Expect = 9e-40, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 100/219 (45%), Gaps = 12/219 (5%) Query: 11 KRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 K +G+ + A+ H S+S + S ERLEFLGD +L +++ +L+ + Sbjct: 25 KVLGFYPDKIEYYQLAVRHKSVSIPTENGRNLSNERLEFLGDAVLNSVVTDILYRRYKEE 84 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG L+ + +V ++ +++A E+ L ++V+ +I + +E+L+ A+ Sbjct: 85 REGFLTNTRSKIVKRDSLNKLALEIGLDKLVKVTK---YVNAHTNNNIYGNALEALLGAI 141 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD G + FV++ + + K + K++L EW T E+ + + Sbjct: 142 YLDYGYKKCKKFVEQRLFKSFVNLDKVAENEVNFKSKLIEWCQKNKLET-EFILLSETMS 200 Query: 184 DHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + F + I G + SK+ ++Q A+ + Sbjct: 201 GSNKHVFLSGLMIQGQKICEASGMSKKESQQNASRIAFE 239 >gi|91215536|ref|ZP_01252507.1| putative ribonuclease III [Psychroflexus torquis ATCC 700755] gi|91186488|gb|EAS72860.1| putative ribonuclease III [Psychroflexus torquis ATCC 700755] Length = 245 Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 60/225 (26%), Positives = 103/225 (45%), Gaps = 12/225 (5%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 + + + +++ I + S+ ++A THSS+ E SYERLEFLGD ILG +IST Sbjct: 16 NGIFFKKIQRIIKVKHKSLSIYKQAFTHSSLKLKDDEGKFISYERLEFLGDSILGAVIST 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF + EG L+ + +VS + + + DLA + K +I + Sbjct: 76 YLFENAPHGDEGYLTKMRSKIVSRKNLNLLGESFDLADLTLSEIPVEKMG----KNINGN 131 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPE 174 + E+LI A+Y+D G + F+ K + + K + K+ + EW E Sbjct: 132 LFEALIGAIYVDKGFKDCEAFIYKKVIREDVDLAKLEKRVMSYKSLMIEWCQKNKFP-FE 190 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + + G D + F V + I+ + + SK+ AE+ A+ Sbjct: 191 FVIEDDFGKDEEKHFAVKLIINNEISGKARETSKKRAEEKASQRA 235 >gi|321309555|ref|YP_004191884.1| ribonuclease III [Mycoplasma haemofelis str. Langford 1] gi|319801399|emb|CBY92045.1| ribonuclease III [Mycoplasma haemofelis str. Langford 1] Length = 229 Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 65/218 (29%), Positives = 99/218 (45%), Gaps = 11/218 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L K G +++L KA THSS + +++ YE+LEFLGD ++GL I++ LF Sbjct: 11 LNKSFGLTIKDKNLFTKAFTHSSYKGCNPNFKGDYEKLEFLGDSVIGLSIASELFKR--D 68 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 G +S + +VS + + V R+LD ++IRV C SI DV E+ I A Sbjct: 69 ISLGAISTSKDQIVSGSSLAYVGRKLDFHNYIRVG----NSCCVISDSIIEDVYEAFIGA 124 Query: 126 LYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS-GP 183 +Y + G E A V W + F D KT+L K+ Y + Sbjct: 125 VYCEFGFETARKIVLSSLWNYFLMGELDFYFDYKTKLNTLVGQKYKGKVTYTLIDSFPSK 184 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 D F V + + + G+ + + AEQ AA + L Sbjct: 185 DGSTTFKVSASWNNDSLSIGLGTTLKKAEQAAAQDALN 222 >gi|330945754|gb|EGH47188.1| ribonuclease III [Pseudomonas syringae pv. pisi str. 1704B] Length = 164 Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 76/157 (48%), Gaps = 3/157 (1%) Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 ++ LF F A+EG+LS LV ET + +AR DL ++R+ S K S Sbjct: 7 WLAEALFERFPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRES 66 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171 I AD +E+LI A+YLD G+E A V + +L +D KT LQE+ ++ Sbjct: 67 ILADALEALIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACE 126 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCS 207 P Y+V G H F V EI+ L ++G S Sbjct: 127 LPRYEVVDIQGEPHCRTFFVECEINLLNEKSRGQGVS 163 >gi|94469421|gb|ABF20199.1| ribonuclease III [Ehrlichia ruminantium] gi|94469427|gb|ABF20203.1| ribonuclease III [Ehrlichia ruminantium] Length = 145 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 78/139 (56%) Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 ++A+ ++L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +W Sbjct: 1 LVEIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFW 60 Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 K A +DAKT LQEWA +K P Y + +SGPDH+P FTV V I+ Sbjct: 61 KNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHA 120 Query: 204 MDCSKRAAEQVAAAEVLKR 222 +K+ AEQ AA+ +L + Sbjct: 121 TGHNKKLAEQKAASLMLAK 139 >gi|163786802|ref|ZP_02181250.1| hypothetical protein FBALC1_16492 [Flavobacteriales bacterium ALC-1] gi|159878662|gb|EDP72718.1| hypothetical protein FBALC1_16492 [Flavobacteriales bacterium ALC-1] Length = 247 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 12/208 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61 + L+K +G+ ++SL KA TH S++ + +YERLEF+GD +L +I+ LF Sbjct: 20 FLELKKILGFKPKSKSLYIKAFTHRSMNIKNKNGNAINYERLEFVGDAMLSSVIAAYLFE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG L+ + +VS E +++ ++L L ++ R +F +I ++ E+ Sbjct: 80 QVPHGDEGYLTKMRSKVVSREHLNELGKDLGLIDLVQ----SRIPKSNFGNNIHGNLFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G + F+ K + K+ L EW + T +Y V Sbjct: 136 LVGAIYLDKGYKFCEKFIYKRVINPYVDIETLEGKVISYKSLLIEWCQKE-KNTFDYNVY 194 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDC 206 +G D F+V + I+ ++ Sbjct: 195 EDTGKDELKHFSVKLSINDKVVSKARAT 222 >gi|168039663|ref|XP_001772316.1| predicted protein [Physcomitrella patens subsp. patens] gi|162676303|gb|EDQ62787.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1275 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 22/242 (9%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +S + S LE + Y F N+ LL +ALTH+S + Y+RLEFLGD +L LI+ + Sbjct: 694 LSEAKVSELEILLNYKFQNKGLLVEALTHASCRRHSGDCYQRLEFLGDAVLDFLITKHFY 753 Query: 61 NHFDSA--KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------- 103 + + G L+ ++ V+ E ++VA +L ++ +S Sbjct: 754 ANSANLKRDPGLLTDLRSAAVNNECFARVAVRHNLHLYLLHNSSDLAARVDKYVHGSTTD 813 Query: 104 ---RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKT 159 + +D+VESL A++LD G ++ + V K + + R + Sbjct: 814 AQCHGWNGDSGPKVLSDLVESLAGAVFLDSGYKLDTVWNVFKQLLKPLVTPATLRLEPIR 873 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 EL E + P YK + D D TV ++ G +++A +VAA + Sbjct: 874 ELWELCQTEKFGEPNYKKKREAMGDFDMTVTVELK-DETITGVGRKPDEKSARKVAAIQA 932 Query: 220 LK 221 L+ Sbjct: 933 LE 934 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 60/157 (38%), Gaps = 44/157 (28%) Query: 21 SLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 +L+ +A+T + QES+ E LE LGD L + +S LF + EGELS R +L Sbjct: 512 NLMLEAIT----TSKCQESFSLEGLELLGDAFLEVSVSERLFLLHNRLDEGELSKRRTNL 567 Query: 79 VSAETCSQVARELDL-------------------------ASFIR---VSSDLRKDVCSF 110 + + ++ RE + ++IR S Sbjct: 568 ICNKMLERLGRERGIMVSKSCRDTTRSTYKQFEIMINLVSENYIRDTQFSPKEWATPGRV 627 Query: 111 MT----------SIQADVVESLIAALYLDGGIEVAGT 137 ADV E+LI A Y+ GG+E A Sbjct: 628 RETQCKLPPLQGKTIADVFEALIGAHYIHGGVEAAQA 664 >gi|308190056|ref|YP_003922987.1| ribonuclease III [Mycoplasma fermentans JER] gi|319777350|ref|YP_004137001.1| ribonuclease iii [Mycoplasma fermentans M64] gi|238809526|dbj|BAH69316.1| hypothetical protein [Mycoplasma fermentans PG18] gi|307624798|gb|ADN69103.1| ribonuclease III [Mycoplasma fermentans JER] gi|318038425|gb|ADV34624.1| Ribonuclease III [Mycoplasma fermentans M64] Length = 236 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 95/238 (39%), Gaps = 19/238 (7%) Query: 1 MSALRYS--TLEKRIGYAFANRSLLEKALTHSSI-----------SHSYQESYERLEFLG 47 M ++ + K + N +A+TH S +Y+ LEFLG Sbjct: 1 MDEIKQTIQEFLKAWNINYHNLGYYRQAVTHGSYFGLKKNQNKNNVSERVGNYQDLEFLG 60 Query: 48 DRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 D IL L S +F F + G +++ + LV ++ ++++ ++ L F+ + Sbjct: 61 DAILQYLSSDFVFKKFPNLSAGNMTLIRSKLVCTKSLNEISTKIGLKDFLLTAPGQMSKD 120 Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA 165 + AD+ E+ IAA+YLD ++V F++K + K +DAKT QE Sbjct: 121 AKRSVKVGADIFEAFIAAIYLDTNLKVVKEFLNKTVFDIKIGDFDIKHLKDAKTAFQEQI 180 Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + Y + P F G SK AE+ AA + L + Sbjct: 181 QSFSKLAVMY-IVSEKSPT---EFEAHAVHDNKIYGIGFGKSKAEAEENAALDALHKM 234 >gi|88801614|ref|ZP_01117142.1| putative ribonuclease III [Polaribacter irgensii 23-P] gi|88782272|gb|EAR13449.1| putative ribonuclease III [Polaribacter irgensii 23-P] Length = 245 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 16/221 (7%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHF 63 L+K + ++ + + +KA TH S+ +YERLEFLGD ILG +IS L+ Sbjct: 21 ELKKLLKFSPTSINKYKKAFTHRSVQMIDRKGIPINYERLEFLGDSILGAVISAYLYKEA 80 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ + +VS E +++ ++L+L F++ + D +I ++ E+LI Sbjct: 81 PKGSEGYLTQMRSKIVSREHLNELGKDLNLIRFVKSNIDQANVG----DNIHGNIFEALI 136 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEY--KVT 178 A+YLD G F+ + + K K + EW + Y Sbjct: 137 GAIYLDKGFNFCQKFIHQNVIAPYVDIAKLEGKITSYKGLIIEWCQKQKK---RYAFDAY 193 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 SG + F+V + I G A+G SK+ AE+ A+ V Sbjct: 194 EDSGNETTKHFSVKISIDGQQIAKGRATSKKKAEEQASKRV 234 >gi|37522217|ref|NP_925594.1| ribonuclease III [Gloeobacter violaceus PCC 7421] gi|35213217|dbj|BAC90589.1| ribonuclease III [Gloeobacter violaceus PCC 7421] Length = 242 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 89/204 (43%), Gaps = 11/204 (5%) Query: 21 SLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +AL H S + E +RLEFLGD IL LL + L+ GE++ + LV Sbjct: 32 ELLHRALIHPSWSAQEGGEDNDRLEFLGDEILRLLAAEFLYRADPELTVGEMTAVRSVLV 91 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG-IEVAGTF 138 S +++A DL F+ V D + AD E++I ALYL G + + + Sbjct: 92 SDVALAELAEGYDLGEFLVVGRSASGDE-RGRITRLADGFEAVIGALYLSTGDLGLIRPW 150 Query: 139 VDKYWKQ--RALKSGKFRRDAKTELQEWAHAK-FGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + + ++ + R + K+ LQE G PEY++ GP F V Sbjct: 151 LLPHLAHLAESVMADPTRGNHKSALQELTQKLAAGELPEYRLVD-PGPP----FRYEVWA 205 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEV 219 G G SK+ A+Q AA Sbjct: 206 LGRLWGSGEGPSKKLAQQRAARGA 229 >gi|126178317|ref|YP_001046282.1| ribonuclease III [Methanoculleus marisnigri JR1] gi|125861111|gb|ABN56300.1| RNAse III [Methanoculleus marisnigri JR1] Length = 258 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 14/210 (6%) Query: 20 RSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 L ++ALTH S ++ + E ERLEFLG+ +L +I+ L+ + GE++ Sbjct: 54 IPLYDRALTHRSYANHGEYPAETFEDNERLEFLGNYVLDFVIADHLYGEY-DLPPGEMN- 111 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 R + +++ R L + +R+ SI AD E+LI A+YLD G+ Sbjct: 112 RRLQVTRNTKLAEIVRRQGLG----IDGAVRRRGQPPTDSIVADAFEALIGAIYLDRGLG 167 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 VA V +++ + R+ + LQE+ + EY ++GP + P + V Sbjct: 168 VARDVVLAIFEEEIAECDTH-RNYRGRLQEYVARENLGELEYAFL-QTGPGNCPVWAARV 225 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + G+ +G +K+ A +AA E L R Sbjct: 226 TVGGIPFGEGEARTKQGAAMIAAKEALARL 255 >gi|269115244|ref|YP_003303007.1| dsRNA-specific ribonuclease III [Mycoplasma hominis] gi|268322869|emb|CAX37604.1| dsRNA-specific ribonuclease III [Mycoplasma hominis ATCC 23114] Length = 231 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 14/220 (6%) Query: 12 RIGYAFAN-----RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + G F R A THSS S+ ++ ESY+ LEFLGD +LG ++S +F+++ Sbjct: 15 KFGINFQKLDEQKRRYFCNAFTHSSYSNEHKNLESYQYLEFLGDSVLGFVVSDFIFDNYK 74 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+ + + +V +++ + +R + + +D++ES I Sbjct: 75 NFGEGKATKLKSEIVDKNALGFLSKYYGFPNCLRTGKSAFANGKGIKSD--SDLIESFIG 132 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A Y G++ + + + K KT+LQE + +G P Y Sbjct: 133 ACYKACGLKFTKEIIYHFIDKILKKFHNSINEHPKTKLQELVQSNWGCRPRY----EDQA 188 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ +F V I+ +G+ SK+ ++ AA++ LK+ Sbjct: 189 LNNGKFESKVFINNNLYGEGIGQSKKESQTKAASDALKKM 228 >gi|256419408|ref|YP_003120061.1| ribonuclease III [Chitinophaga pinensis DSM 2588] gi|256034316|gb|ACU57860.1| ribonuclease III [Chitinophaga pinensis DSM 2588] Length = 253 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 9/224 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y L +G+A N SL E AL+H S + ES ERLE+LGD ILG +I LF + Sbjct: 32 YKDLYNLLGFAPGNFSLYEVALSHRSSKEKFLESNERLEYLGDAILGAIIGDYLFKKYPY 91 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS-IQADVVESLIA 124 EG L+ + +V+ + + +A ++ L K S I + +E+L+ Sbjct: 92 KTEGYLTEMRSKIVNRQQLNDIAIKMGLRKLTIY----DKYNSFLKISQIFGNTLEALVG 147 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G FV + + + + K +L WA+ E+ + Sbjct: 148 AVYLDKGYNRTKQFVHQRLIVPYIDLEQLENVEMNHKNKLYGWANKHGKTL-EFDLLEEQ 206 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + FTV + G G +K+ A Q+AA + ++ G+ Sbjct: 207 MDNGRRIFTVGAVVDGELICSGKAFNKKDASQIAAQQAIELLGL 250 >gi|332519389|ref|ZP_08395856.1| ribonuclease III [Lacinutrix algicola 5H-3-7-4] gi|332045237|gb|EGI81430.1| ribonuclease III [Lacinutrix algicola 5H-3-7-4] Length = 247 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 12/208 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + T+ + IGY + A TH S++ + +YERLEFLGD +L +I+ L+ Sbjct: 19 FITVSQIIGYKPKTIKHFKTAFTHRSMNIRNSKGNIVNYERLEFLGDAMLSAVIAHHLYE 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 S EG L+ + +VS E +++ R+L L + + + + F +I ++ ES Sbjct: 79 EVPSGDEGYLTKMRSKVVSREHLNELGRDLKLINLV----ESKIPKGQFGDNIHGNLFES 134 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLDGG + F+ K + + K+ L EW + T +Y V Sbjct: 135 LVGAIYLDGGFKACEKFIYKRVITPFVDIEQLEGKVISYKSLLIEWCQKEKK-TFDYNVY 193 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDC 206 +G D+ F+V + I ++G Sbjct: 194 EDTGNDNIRHFSVKLSIDNKIVSKGRAT 221 >gi|242078881|ref|XP_002444209.1| hypothetical protein SORBIDRAFT_07g015020 [Sorghum bicolor] gi|241940559|gb|EES13704.1| hypothetical protein SORBIDRAFT_07g015020 [Sorghum bicolor] Length = 291 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 62/244 (25%), Positives = 98/244 (40%), Gaps = 27/244 (11%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58 MSA + +E +GY FA++SL+E ALTH S + ++YERLE+LGD +L L+S Sbjct: 22 MSAEDVAAIEAVLGYEFADKSLVELALTHGSFYFPYRPGDTYERLEYLGDGVLTCLMSRE 81 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----------------- 101 +F ++ + G L+ + V E ++VA + L F+R + Sbjct: 82 VFRNYRTLPPGPLTRLRAANVDTEKLARVAVDRGLHRFLRHKAPKLQDQICLFIEEMRKY 141 Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160 + + + D+VESLI A+Y D + V + + + TE Sbjct: 142 PVHSNGLLDPPKVLCDIVESLIGAIYWDSDFNQEEVWRVFRTLADPLIGLETLGKHPVTE 201 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEV 219 L E+ + D V V I G A K A+ AA Sbjct: 202 LFEFCQKTRRG------VKFVKDEWDKSLKVEVLIDGELVASATYGPKKEIAQNRAAKAA 255 Query: 220 LKRE 223 L + Sbjct: 256 LDKL 259 >gi|126662618|ref|ZP_01733617.1| putative ribonuclease III [Flavobacteria bacterium BAL38] gi|126625997|gb|EAZ96686.1| putative ribonuclease III [Flavobacteria bacterium BAL38] Length = 260 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 12/223 (5%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLL 59 + + + K +G+ +KA TH S + +YERLEFLGD +LG +I+ L Sbjct: 32 IFFEKITKILGFEPKELRYYKKAFTHRSTNKVDEKGNPFNYERLEFLGDAMLGSVIAAHL 91 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 +N S EG L+ + +VS E +++ R+ +L F+ + + + F +I ++ Sbjct: 92 YNEVPSGDEGYLTKMRSKIVSREHLNELGRDFNLVHFV----ESKVNSNQFGENIHGNLF 147 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYK 176 E+ I A+YLD G F+ ++ + K K+ + EW + ++ + Sbjct: 148 EAFIGAIYLDRGFTYCEMFIRNKIIKQYVDIAKLEGKVISYKSLIIEWCQKE-KISFFFD 206 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +G + F V + I A+ SK+ AE+ A+ Sbjct: 207 FVEDNGIEGQKYFGVKLLIDQKIIARARATSKKKAEEKASQRA 249 >gi|262278196|ref|ZP_06055981.1| ribonuclease III [Acinetobacter calcoaceticus RUH2202] gi|262258547|gb|EEY77280.1| ribonuclease III [Acinetobacter calcoaceticus RUH2202] Length = 155 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 3/151 (1%) Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG-I 132 +LV E ++A +L L+ + +S+ K SI AD VE++I A+Y+D G + Sbjct: 1 MRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYIDSGDL 60 Query: 133 EVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 + V K++ ++ +D K+ LQE+ A+ P Y+V G F Sbjct: 61 NLLTDIVLKWYVPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFK 120 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V I GL+ G S+R AEQ AAAE+LK Sbjct: 121 VECLIDGLSKIYGEGSSRRFAEQAAAAEILK 151 >gi|213158242|ref|YP_002320293.1| ribonuclease III [Acinetobacter baumannii AB0057] gi|215482645|ref|YP_002324839.1| Ribonuclease 3 [Acinetobacter baumannii AB307-0294] gi|213057402|gb|ACJ42304.1| ribonuclease III [Acinetobacter baumannii AB0057] gi|213986369|gb|ACJ56668.1| Ribonuclease 3 [Acinetobacter baumannii AB307-0294] gi|322509030|gb|ADX04484.1| rnc [Acinetobacter baumannii 1656-2] gi|323519012|gb|ADX93393.1| ribonuclease III [Acinetobacter baumannii TCDC-AB0715] Length = 155 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 3/151 (1%) Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG-I 132 +LV E ++A +L L+ + +S+ K SI AD VE++I A+YLD + Sbjct: 1 MRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSSDL 60 Query: 133 EVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 + V K++ ++ +D K+ LQE+ A+ P Y+V G F Sbjct: 61 NLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFK 120 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V + GL+ G S+R AEQ AAAE+LK Sbjct: 121 VECLVDGLSKIHGEGSSRRFAEQAAAAEILK 151 >gi|255521158|ref|ZP_05388395.1| ribonuclease III [Listeria monocytogenes FSL J1-175] Length = 147 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 1/144 (0%) Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + + A + + ++R+ K ++ ADV ES I ALYLD GI+ TF++ Sbjct: 1 EPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVTFLE 60 Query: 141 KYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 + + + D KT+LQE V EY + +GP H+ F V ++G Sbjct: 61 RVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQV 120 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 +G +K+ AEQ AA + + Sbjct: 121 LGKGSGRTKKQAEQSAAQFAINQL 144 >gi|33864688|ref|NP_896247.1| putative ribonuclease III [Synechococcus sp. WH 8102] gi|33632211|emb|CAE06667.1| putative ribonuclease III [Synechococcus sp. WH 8102] Length = 238 Score = 164 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 65/213 (30%), Positives = 103/213 (48%), Gaps = 11/213 (5%) Query: 5 RYSTLEKRIGYAFAN-RSLL---EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +L KR+G + SLL E+A+TH+S + ERLEFLGD +L L + L Sbjct: 8 SLKSLIKRLGLEDMDSPSLLLEVERAMTHTS--SGRTDHNERLEFLGDAVLRLAATLYLD 65 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 H G+ S LVS +++ +D+ S + + D + T+I+AD E Sbjct: 66 RHHPGLTVGDSSSLRAQLVSDRWLAELGEAIDIESCLILGVKALGDAAA-RTTIRADATE 124 Query: 121 SLIAALY-LDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +LI ALY + G +E ++ +W++ + + R + KT LQEW+ + PEY Sbjct: 125 ALIGALYKVSGSLEPILGWLTPHWQRTSADVLAAPHRFNGKTTLQEWSQGQGLGLPEYST 184 Query: 178 TFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKR 209 RS DP RF V ++ A+G S++ Sbjct: 185 EERSQVHGDPQRFRSTVRVASKVLAEGHGRSRK 217 >gi|94272417|ref|ZP_01292119.1| Ribonuclease III [delta proteobacterium MLMS-1] gi|93450139|gb|EAT01469.1| Ribonuclease III [delta proteobacterium MLMS-1] Length = 156 Score = 164 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 1/134 (0%) Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +LV+ E + +AR+L L FIR+ SI A E+L+ A+YLDGG E A Sbjct: 1 ALVNEEHLAGMARQLALGEFIRLGRGEEATGGRDKPSILAATFEALVGAVYLDGGYEPAL 60 Query: 137 TFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + + R D+K+ LQE + G P Y + GPDHD RFTV VE+ Sbjct: 61 ALLRPLFAPWVANPPLPRISDSKSALQEVLQQRHGEGPVYYLENEEGPDHDKRFTVRVEL 120 Query: 196 SGLAPAQGMDCSKR 209 G +G K+ Sbjct: 121 QGKVLGRGRGRGKK 134 >gi|330983107|gb|EGH81210.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 132 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 54/134 (40%), Positives = 76/134 (56%), Gaps = 3/134 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+L Sbjct: 59 SPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 118 Query: 123 IAALYLDGGIEVAG 136 I A+YLD G+E A Sbjct: 119 IGAIYLDAGMEAAR 132 >gi|159027736|emb|CAO89606.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 234 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 104/208 (50%), Gaps = 10/208 (4%) Query: 5 RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + TL +++G + LL+ ALTH S+S ++YE+LEF+GD ++ L+ + +L Sbjct: 11 QLKTLVEKLGLSADVPVRWDLLDLALTHPSVSRD--KNYEQLEFVGDSVVRLVAAEVLLE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + A GE + + +VS T ++ A ++ VSS D ++ AD E+ Sbjct: 69 TYPEALVGEFAALRSMMVSDRTLAEFADRYGFERYLLVSSSTSIDRAGRISR-LADAFEA 127 Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ ALYL + + +++D+ +++A ++ R++ K LQEW AK+ P+Y V Sbjct: 128 VLGALYLSTQTMILVRSWLDEPLREKAAEIRRDPARQNYKDALQEWTQAKYKKLPQYLVK 187 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDC 206 +G D + F V ++ G Sbjct: 188 EINGLDQER-FCAEVWLNEQKLGVGTGR 214 >gi|157120736|ref|XP_001659747.1| dicer-1 [Aedes aegypti] gi|108883036|gb|EAT47261.1| dicer-1 [Aedes aegypti] Length = 2193 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 62/262 (23%), Positives = 99/262 (37%), Gaps = 52/262 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS E +GY F +RS L +A+TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1937 YSAFEDSLGYQFTDRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1996 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A D + R +S L + F+ Sbjct: 1997 QHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHIISE 2056 Query: 112 ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151 DV ES+ A++LD + + + Sbjct: 2057 EYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMSLDAVWKVYRSMMGPEIEQFS 2116 Query: 152 KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K+ ++E AKFG D R V VE+ G +G+ Sbjct: 2117 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVEVFGKGTFRGIGR 2166 Query: 207 SKRAAEQVAAAEV---LKREGI 225 + R A+ AA LK+ G+ Sbjct: 2167 NYRIAKCTAAKCALRQLKKMGL 2188 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 9/110 (8%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1654 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYENVHEGKLSHLRSKQV 1711 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 S ++ R L + + D C ++ ++ ++LI A Sbjct: 1712 SNLNLYRLGRRKVLGESMIATKFEPHDNWLPPCYYVPK---ELEQALIDA 1758 >gi|294993977|ref|ZP_06799668.1| ribonuclease III [Mycobacterium tuberculosis 210] Length = 188 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 6/161 (3%) Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCS 109 + I+ LF+ EG+L+ S+V+ + + VAR L L + + + Sbjct: 1 MTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGA 60 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHA 167 +SI AD +ESL+ A+YL G+E A + + + + D KT LQE A Sbjct: 61 DKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAA 120 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + P Y VT +GPDHD FT VV + G+ SK Sbjct: 121 RGLGAPSYLVTS-TGPDHDKEFTAVVVVMDSEYGSGVGRSK 160 >gi|33862159|ref|NP_893720.1| putative ribonuclease III [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634377|emb|CAE20062.1| putative ribonuclease III [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 249 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 13/216 (6%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 K I + F +ALTHSS ++ +YE+LEF GD +L L S + + S G Sbjct: 36 KLILHTFN------EALTHSSANNIV--NYEKLEFFGDAVLRLSASDFIERTYKSMSVGS 87 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LD 129 S + +VS E +++ +++ + I D S +I A+ E+LI A+Y Sbjct: 88 RSELRSQIVSDEWLTELGKKIFIEKVIIKGPKAMGDENS-KDTIIAETSEALIGAIYKCF 146 Query: 130 GGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD- 186 I ++D +WK+ A + +AK+ LQEW ++ P YK+ S D Sbjct: 147 NSINEVNIWLDNFWKKDAELYLQAPHKYNAKSALQEWCQSQGFDLPIYKIYEVSKNHGDP 206 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 RF+ + I+G A S + AE+ AA+ ++++ Sbjct: 207 KRFSCEIYINGSKKAFSFGHSHKKAEKNAASILIQK 242 >gi|94469424|gb|ABF20201.1| ribonuclease III [Ehrlichia ruminantium] Length = 145 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 49/139 (35%), Positives = 77/139 (55%) Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 ++A+ ++L FI +S R + ++ + +E+LI A+YLDGG++ A F+ + Sbjct: 1 LVEIAQSINLGIFIIMSDGERSCGGAKNSNNLENALEALIGAIYLDGGLKAAKDFIFLFR 60 Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 K A +DAKT LQEWA +K P Y + +SGPDH+P FTV V I Sbjct: 61 KNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHA 120 Query: 204 MDCSKRAAEQVAAAEVLKR 222 +K+ AEQ AA+ +L++ Sbjct: 121 TGHNKKLAEQKAASLMLEK 139 >gi|257051057|sp|Q8R418|DICER_MOUSE RecName: Full=Endoribonuclease Dicer; AltName: Full=Double-strand-specific ribonuclease mDCR-1 Length = 1916 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1660 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1719 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1720 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1779 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ EV + K Sbjct: 1780 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1839 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1840 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1892 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1893 IAKSAAARRALR 1904 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1350 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1351 VSNCNLYRLGKKKGLPSRMVVS 1372 >gi|148686840|gb|EDL18787.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Mus musculus] Length = 1916 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1660 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1719 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1720 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1779 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ EV + K Sbjct: 1780 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1839 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1840 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1892 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1893 IAKSAAARRALR 1904 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1350 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1351 VSNCNLYRLGKKKGLPSRMVVS 1372 >gi|148686841|gb|EDL18788.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Mus musculus] Length = 1908 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1652 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1711 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1712 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1771 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ EV + K Sbjct: 1772 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1831 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1832 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1884 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1885 IAKSAAARRALR 1896 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1285 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1342 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1343 VSNCNLYRLGKKKGLPSRMVVS 1364 >gi|117168271|ref|NP_683750.2| endoribonuclease Dicer [Mus musculus] gi|225000568|gb|AAI72621.1| Dicer1, Dcr-1 homolog (Drosophila) [synthetic construct] Length = 1906 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1650 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1709 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1710 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1769 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ EV + K Sbjct: 1770 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1829 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1830 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1882 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1883 IAKSAAARRALR 1894 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1283 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1340 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1341 VSNCNLYRLGKKKGLPSRMVVS 1362 >gi|20385913|gb|AAM21495.1|AF430845_1 dicer-like protein [Mus musculus] Length = 1917 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1661 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1720 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1721 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1780 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ EV + K Sbjct: 1781 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1840 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1841 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1893 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1894 IAKSAAARRALR 1905 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1352 VSNCNLYRLGKKKGLPSRMVVS 1373 >gi|37360146|dbj|BAC98051.1| mKIAA0928 protein [Mus musculus] Length = 1475 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1219 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1278 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1279 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1338 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ EV + K Sbjct: 1339 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1398 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1399 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1451 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1452 IAKSAAARRALR 1463 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 852 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 909 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 910 VSNCNLYRLGKKKGLPSRMVVS 931 >gi|302793023|ref|XP_002978277.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii] gi|300154298|gb|EFJ20934.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii] Length = 1728 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 96/237 (40%), Gaps = 30/237 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+++ + LE IGY F +S+L +A++H+S + Y+RLEF+GD +L LI+ LF Sbjct: 1379 MNSIDFEKLELAIGYKFQMKSVLVEAISHASRPSAGVPCYQRLEFVGDAVLDHLITRYLF 1438 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-------------- 106 + G L+ + V+ E ++++ + +R S + Sbjct: 1439 FRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHLHLRHGSSALEAQIKDFVKDIQSELD 1498 Query: 107 ---------VCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 + D++ES+ A++LD G+ + V + + + Sbjct: 1499 KPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLAADEVWKVFERLLEPMVTPDTLPVH 1558 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ELQE + EY+ + TV V + G+ + K+ A++ Sbjct: 1559 PVRELQERCQQQAEGL-EYRASREGSIA-----TVEVFVDGVQIGCAQNTQKKMAQK 1609 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ IG+ +L +ALT +S ++ SYER E LGD L ++S LF Sbjct: 1160 QLKHEIGFPIPAAKVL-EALTAASCQETF--SYERAELLGDAYLKWVVSRRLFIKHPRKH 1216 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ VS + A L S+I+ Sbjct: 1217 EGQLTRMRQQTVSNMVLYEFAISKSLQSYIQ 1247 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 6/72 (8%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-----QGMD-CSKRAAEQV 214 L + + P+Y++ SGP H RFT V ++ +G S + A+ Sbjct: 1648 LNDICLQRQWPMPQYRLLSESGPAHAKRFTYTVRVNTRERGWTDECEGQAMPSMKKAKDS 1707 Query: 215 AAAEVLKREGIW 226 AA +L+ W Sbjct: 1708 AALVLLEVLKQW 1719 >gi|170033786|ref|XP_001844757.1| endoribonuclease Dcr-1 [Culex quinquefasciatus] gi|167874834|gb|EDS38217.1| endoribonuclease Dcr-1 [Culex quinquefasciatus] Length = 2270 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 62/262 (23%), Positives = 99/262 (37%), Gaps = 52/262 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS E +GY F +RS L +A+TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 2014 YSAFEDSLGYRFQDRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2073 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A D + R +S L + F+ Sbjct: 2074 QHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHSISE 2133 Query: 112 ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151 DV ES+ A++LD + + + Sbjct: 2134 EYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMSLDAVWRVYRGMMGPEIEQFS 2193 Query: 152 KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K+ ++E AKFG D R V VE+ G +G+ Sbjct: 2194 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVEVFGKGTFRGIGR 2243 Query: 207 SKRAAEQVAAAEV---LKREGI 225 + R A+ AA LK+ G+ Sbjct: 2244 NYRIAKCTAAKCALRQLKKMGL 2265 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 9/110 (8%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1731 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYENVHEGKLSHLRSKQV 1788 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 S ++ R L + + D C ++ ++ ++LI A Sbjct: 1789 SNLNLYRLGRRKVLGESMIATKFEPHDNWLPPCYYVPK---ELEQALIDA 1835 >gi|302765743|ref|XP_002966292.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii] gi|300165712|gb|EFJ32319.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii] Length = 1730 Score = 162 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 96/237 (40%), Gaps = 30/237 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+++ + LE IGY F +S+L +A++H+S + Y+RLEF+GD +L LI+ LF Sbjct: 1379 MNSIDFEKLELAIGYKFQMKSVLVEAISHASRPSAGVPCYQRLEFVGDAVLDHLITRYLF 1438 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-------------- 106 + G L+ + V+ E ++++ + +R S + Sbjct: 1439 FRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHLHLRHGSSALEAQIKDFVKDIQSELD 1498 Query: 107 ---------VCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 + D++ES+ A++LD G+ + V + + + Sbjct: 1499 KPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLAADEVWKVFERLLEPMVTPDTLPVH 1558 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ELQE + EY+ + TV V + G+ + K+ A++ Sbjct: 1559 PVRELQERCQQQAEGL-EYRASREGSIA-----TVEVFVDGVQIGCAQNTQKKMAQK 1609 Score = 66.3 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ IG+ +L +ALT +S ++ SYER E LGD L ++S LF Sbjct: 1160 QLKHEIGFPIPAAKVL-EALTAASCQETF--SYERAELLGDAYLKWVVSRRLFIKHPRKH 1216 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ VS + A L S+I+ Sbjct: 1217 EGQLTRMRQQTVSNMVLYEFAISKSLQSYIQ 1247 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 6/72 (8%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-----QGMD-CSKRAAEQV 214 L + + P+Y++ SGP H RFT V ++ +G S + A+ Sbjct: 1648 LNDICLQRQWPMPQYRLLSESGPAHAKRFTYTVRVNTRERGWTDECEGQAMPSMKKAKDS 1707 Query: 215 AAAEVLKREGIW 226 AA +L+ W Sbjct: 1708 AALVLLEVLKQW 1719 >gi|89889945|ref|ZP_01201456.1| ribonuclease III (Rnase III), double-stranded RNA binding motif [Flavobacteria bacterium BBFL7] gi|89518218|gb|EAS20874.1| ribonuclease III (Rnase III), double-stranded RNA binding motif [Flavobacteria bacterium BBFL7] Length = 246 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 12/205 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 ++K G N + KA TH S+ + SYERLEFLGD ILG +I+ ++N Sbjct: 23 IKKITGITPKNIDIYRKAFTHKSMSLKDADGNPISYERLEFLGDAILGSVIAEYIYNEVP 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +VS E +++ + L F + R ++ ++ E+L+ Sbjct: 83 HGDEGYLTKMRSKIVSREHLNELGLDFGLIDFAKTQVPERNFGA----NVHGNLFEALVG 138 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G + F+ + + + K K+ L EW T Y + Sbjct: 139 AIYLDKGYKRTQNFISRRVIEPYVDIEKLEGKVISYKSILIEWCQKNKK-TFNYHTYEDT 197 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDC 206 G + F+V + I A+ Sbjct: 198 GVNEIRHFSVKLSIDDRVLAKARAT 222 >gi|94469415|gb|ABF20195.1| ribonuclease III [Ehrlichia ruminantium] Length = 138 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 49/132 (37%), Positives = 74/132 (56%) Query: 91 LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 ++L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK A Sbjct: 1 INLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHM 60 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I+ +K+ Sbjct: 61 KVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATGHNKKL 120 Query: 211 AEQVAAAEVLKR 222 AEQ AA+ +L + Sbjct: 121 AEQKAASLMLAK 132 >gi|94469430|gb|ABF20205.1| ribonuclease III [Ehrlichia ruminantium] gi|100271805|gb|ABF69302.1| ribonuclease III [Ehrlichia ruminantium] gi|100271811|gb|ABF69306.1| ribonuclease III [Ehrlichia ruminantium] gi|100271844|gb|ABF69328.1| ribonuclease III [Ehrlichia ruminantium] Length = 137 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 49/131 (37%), Positives = 73/131 (55%) Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 +L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK A Sbjct: 1 NLGIFIIMSDGERSCGGAKNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I +K+ A Sbjct: 61 VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATGHNKKLA 120 Query: 212 EQVAAAEVLKR 222 EQ AA+ +L++ Sbjct: 121 EQKAASLMLEK 131 >gi|270015102|gb|EFA11550.1| dicer-1 [Tribolium castaneum] Length = 1835 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 103/253 (40%), Gaps = 43/253 (16%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E+ IGY F +RS L +ALTH+S S ++ + Y+RLEFLGD +L LI+ L+ Sbjct: 1579 YDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTR 1638 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A + R +S L + V F+ Sbjct: 1639 MHSPGALTDLRSALVNNTIFASLAVRNGFHRYFRNLSPSLNEVVEKFVRLQEDSGHTLVD 1698 Query: 112 ----------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 DV ES+ A++LD G+ + + Y ++ + Sbjct: 1699 ELYLVVETEEVEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWKVYYNMMKSEIEQFSNK 1758 Query: 156 DAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 K+ ++E AKFG D R V VE+ G +G+ + R Sbjct: 1759 VPKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVEVFGKGVFKGIGRNYRI 1810 Query: 211 AEQVAAAEVLKRE 223 A+ AA LK Sbjct: 1811 AKCTAAKCALKNL 1823 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 9/112 (8%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 ++L +ALT S+ + + ERLE +GD L I+ L++ +++ EG+LS + V Sbjct: 1352 PNVLLQALTMSNANDGI--NLERLETIGDSFLKYAITNYLYSKYENVHEGKLSHLRSKQV 1409 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAALY 127 S ++ R L ++ + D C ++ ++ E+LI A + Sbjct: 1410 SNLNLYRLGRRKGLGEYMIATKFDPHDNWLPPCFYVPK---ELEEALIDAQF 1458 >gi|324500060|gb|ADY40039.1| Endoribonuclease dcr-1 [Ascaris suum] Length = 1970 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 100/259 (38%), Gaps = 47/259 (18%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++S LE I Y F +R+ L +A TH+S + Y+RLEFLGD +L +I+ LF H Sbjct: 1701 FQFSKLEDSICYRFKDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQH 1760 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLA---------------SFIRVSSDLRKDV 107 G L+ ++LV+ + +A + + F+R+ ++ Sbjct: 1761 PRQYSPGVLTDLRSALVNNTIFASLAVKYNFHKHFVAMCPGLHHMIEKFVRLCAEKNFSG 1820 Query: 108 CSFM----------------------TSIQADVVESLIAALYLDGG--IEVAGTFVDKYW 143 +F D+ ES+ A+YLD G ++V Sbjct: 1821 ANFNAEMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLDVVWRVFYNLM 1880 Query: 144 KQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K+ + + EL E + + ++ +G + V V+I G Sbjct: 1881 KETIEECCNNPPKSPIRELLELEPERARFSKLERIL-ETG-----KVRVTVDIQGKCRFT 1934 Query: 203 GMDCSKRAAEQVAAAEVLK 221 GM S R A+ AA L+ Sbjct: 1935 GMGRSYRIAKCTAAKRALR 1953 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +ALT S+ S + ERLE +GD L ++ LF+ EG+LS + VS Sbjct: 1450 LLQALTMSNASDGI--NLERLETVGDSFLKYAVTDYLFHMNPEQHEGKLSFARSKEVSNC 1507 Query: 83 TCSQVARELDLASFI 97 ++ ++ +L S + Sbjct: 1508 NLYRLGKKRNLPSLM 1522 >gi|189234048|ref|XP_968993.2| PREDICTED: Dicer-1 [Tribolium castaneum] Length = 1865 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 103/253 (40%), Gaps = 43/253 (16%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E+ IGY F +RS L +ALTH+S S ++ + Y+RLEFLGD +L LI+ L+ Sbjct: 1609 YDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTR 1668 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A + R +S L + V F+ Sbjct: 1669 MHSPGALTDLRSALVNNTIFASLAVRNGFHRYFRNLSPSLNEVVEKFVRLQEDSGHTLVD 1728 Query: 112 ----------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 DV ES+ A++LD G+ + + Y ++ + Sbjct: 1729 ELYLVVETEEVEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWKVYYNMMKSEIEQFSNK 1788 Query: 156 DAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 K+ ++E AKFG D R V VE+ G +G+ + R Sbjct: 1789 VPKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVEVFGKGVFKGIGRNYRI 1840 Query: 211 AEQVAAAEVLKRE 223 A+ AA LK Sbjct: 1841 AKCTAAKCALKNL 1853 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 9/112 (8%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 ++L +ALT S+ + + ERLE +GD L I+ L++ +++ EG+LS + V Sbjct: 1382 PNVLLQALTMSNANDGI--NLERLETIGDSFLKYAITNYLYSKYENVHEGKLSHLRSKQV 1439 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAALY 127 S ++ R L ++ + D C ++ ++ E+LI A + Sbjct: 1440 SNLNLYRLGRRKGLGEYMIATKFDPHDNWLPPCFYVPK---ELEEALIDAQF 1488 >gi|195109134|ref|XP_001999145.1| GI24348 [Drosophila mojavensis] gi|193915739|gb|EDW14606.1| GI24348 [Drosophila mojavensis] Length = 2256 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 49/257 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 2000 FEEFEASLGYTFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2059 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A + R +S L + F+ Sbjct: 2060 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQENGHCISE 2119 Query: 112 ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151 DV ES+ A++LD + +V K + Sbjct: 2120 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVFSNMMKPEIEQFS 2179 Query: 152 KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K+ ++E AKFG D R V V++ +G+ Sbjct: 2180 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2229 Query: 207 SKRAAEQVAAAEVLKRE 223 + R A+ AA L++ Sbjct: 2230 NYRIAKCTAAKCALRQL 2246 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1717 ELVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1774 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1775 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1830 >gi|22830885|dbj|BAC15765.1| double-strand-specific ribonuclease MDCR [Mus musculus] Length = 1906 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1650 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1709 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1710 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1769 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ EV + K Sbjct: 1770 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1829 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1830 SANVPRSPVRELLEMEPETAEFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1882 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1883 IAKSAAARRALR 1894 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1283 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1340 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1341 VSNCNLYRLGKKKGLPSRMVVS 1362 >gi|195037032|ref|XP_001989969.1| GH18503 [Drosophila grimshawi] gi|193894165|gb|EDV93031.1| GH18503 [Drosophila grimshawi] Length = 2254 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 49/257 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1998 FEEFEASLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2057 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A + R +S L + F+ Sbjct: 2058 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQENGHSISE 2117 Query: 112 ------------------TSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSG 151 DV ES+ A++LD ++V K + Sbjct: 2118 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSDLSLDVVWRVYSNMMKPEIEQFS 2177 Query: 152 KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K+ ++E AKFG D R V V++ +G+ Sbjct: 2178 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2227 Query: 207 SKRAAEQVAAAEVLKRE 223 + R A+ AA L++ Sbjct: 2228 NYRIAKCTAAKCALRQL 2244 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1712 ELVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYMTYENVHEGK 1769 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1770 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1825 >gi|158334880|ref|YP_001516052.1| ribonuclease III [Acaryochloris marina MBIC11017] gi|158305121|gb|ABW26738.1| ribonuclease III [Acaryochloris marina MBIC11017] Length = 247 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 96/221 (43%), Gaps = 18/221 (8%) Query: 2 SALRYSTLEKRI------GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55 R LEK I G A LL+ ALTH S S + +YE+LEF+GD ++ LL Sbjct: 5 PPQRQRQLEKLIQRLGLPGNAPIRWDLLDLALTHPSAS--GRANYEQLEFVGDSVVRLLA 62 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + LL GE S + LVS + +A L F+ + KD S Sbjct: 63 AVLLQAENAQGSVGEWSAIRSVLVSDRHLATLAANYGLDRFLLLGPSTLKDR-RGQDSRL 121 Query: 116 ADVVESLIAALYLDGG-IEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVT 172 AD E+++ ALYL G + + ++ + +A ++ ++ K LQ+W A + Sbjct: 122 ADAFEAVLGALYLSTGDLSLIQPWLQDPLRNKAEQVRIDPAYQNYKAALQQWTQAVYQQL 181 Query: 173 PEYKVTFRSGPDHDP------RFTVVVEISGLAPAQGMDCS 207 PEY+V S P DP RFT V + G S Sbjct: 182 PEYRVQETSPPSQDPSDVMADRFTAEVWLQEELLGVGKGHS 222 >gi|257051055|sp|A0MQH0|DICER_CRIGR RecName: Full=Endoribonuclease Dicer gi|116831677|gb|ABK28790.1| DICER [Cricetulus griseus] Length = 1917 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 100/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1661 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1720 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1721 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1780 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ EV + K Sbjct: 1781 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1840 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1841 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1893 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1894 IAKSAAARRALR 1905 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1350 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1351 VSNCNLYRLGKKKGLPSRMVVS 1372 >gi|242008637|ref|XP_002425109.1| dicer-1, putative [Pediculus humanus corporis] gi|212508774|gb|EEB12371.1| dicer-1, putative [Pediculus humanus corporis] Length = 471 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 59/258 (22%), Positives = 102/258 (39%), Gaps = 52/258 (20%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y+ LE+ +GY F + LL +A+TH S + Y+RLEFLGD IL L++ + +F Sbjct: 220 YTDLEETLGYTFKRKELLLEAITHPSYVRNRLTPCYQRLEFLGDAILDFLVTVYIQENFK 279 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSF------------- 110 G ++ ++LV+ T + ++ + D ++ SS L K + +F Sbjct: 280 DMNPGLITDIRSALVNNSTLACLSVKYDFHKYLLYTSSPLNKCIENFVKIQISNNHAVNE 339 Query: 111 ------------------MTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKS 150 + D+ ESL A+++D +E K K+ + Sbjct: 340 QALITLEENDAIMAESVTVPKALGDIFESLAGAIFIDSENSLETVWNVFYKIMKKELDEF 399 Query: 151 GKFRRDAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGM 204 KT L E G P ++ T ++ +V I A G Sbjct: 400 TVNP--PKTAVRVLHEIC----GEKPFFETTV-----YEKVVSVKCSIYYKDEEIVAHGF 448 Query: 205 DCSKRAAEQVAAAEVLKR 222 +K+ A++ A LK+ Sbjct: 449 GDNKKDAKKSACKMALKQ 466 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 25/59 (42%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 YE L+ LGD L S LF + S EG L+ LV + +L +FI Sbjct: 7 DYENLKILGDSFLKFSCSFFLFKTYPSLHEGILTNVKGKLVGNKNLLDCGVAKNLPNFI 65 >gi|195391256|ref|XP_002054279.1| GJ24359 [Drosophila virilis] gi|194152365|gb|EDW67799.1| GJ24359 [Drosophila virilis] Length = 2250 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 98/257 (38%), Gaps = 49/257 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F++RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1994 FEEFESSLGYTFSDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2053 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A + R +S L + F+ Sbjct: 2054 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQENGHIISE 2113 Query: 112 ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151 DV ES+ A++LD + +V K + Sbjct: 2114 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVYSNMMKPEIEQFS 2173 Query: 152 KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K+ ++E AKFG D R V V++ +G+ Sbjct: 2174 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2223 Query: 207 SKRAAEQVAAAEVLKRE 223 + R A+ AA L++ Sbjct: 2224 NYRIAKCTAAKCALRQL 2240 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1708 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1765 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1766 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1821 >gi|100271817|gb|ABF69310.1| ribonuclease III [Ehrlichia ruminantium] Length = 137 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 49/131 (37%), Positives = 73/131 (55%) Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 +L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK A Sbjct: 1 NLGIFIIMSDGERSCGGAKNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I +K+ A Sbjct: 61 VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATGHNKKPA 120 Query: 212 EQVAAAEVLKR 222 EQ AA+ +L++ Sbjct: 121 EQKAASLMLEK 131 >gi|332223646|ref|XP_003260983.1| PREDICTED: endoribonuclease Dicer isoform 1 [Nomascus leucogenys] gi|332223648|ref|XP_003260984.1| PREDICTED: endoribonuclease Dicer isoform 2 [Nomascus leucogenys] Length = 1922 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E + K Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1899 IAKSAAARRALR 1910 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1350 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1351 VSNCNLYRLGKKKGLPSRMVVS 1372 >gi|297695799|ref|XP_002825114.1| PREDICTED: endoribonuclease Dicer-like isoform 1 [Pongo abelii] gi|297695801|ref|XP_002825115.1| PREDICTED: endoribonuclease Dicer-like isoform 2 [Pongo abelii] gi|297695803|ref|XP_002825116.1| PREDICTED: endoribonuclease Dicer-like isoform 3 [Pongo abelii] Length = 1922 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E + K Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1899 IAKSAAARRALR 1910 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372 >gi|296215831|ref|XP_002754304.1| PREDICTED: endoribonuclease Dicer isoform 1 [Callithrix jacchus] gi|296215833|ref|XP_002754305.1| PREDICTED: endoribonuclease Dicer isoform 2 [Callithrix jacchus] gi|296215835|ref|XP_002754306.1| PREDICTED: endoribonuclease Dicer isoform 3 [Callithrix jacchus] Length = 1922 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E + K Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1899 IAKSAAARRALR 1910 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372 >gi|193787170|dbj|BAG52376.1| unnamed protein product [Homo sapiens] Length = 820 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 564 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 623 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 624 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 683 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E + K Sbjct: 684 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 743 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 744 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 796 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 797 IAKSAAARRALR 808 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 181 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 238 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 239 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 270 >gi|193786026|dbj|BAG51002.1| unnamed protein product [Homo sapiens] Length = 554 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 298 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 357 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 358 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 417 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E + K Sbjct: 418 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 477 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 478 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 530 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 531 IAKSAAARRALR 542 >gi|119602001|gb|EAW81595.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Homo sapiens] Length = 1923 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E + K Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1847 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1899 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1900 IAKSAAARRALR 1911 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1284 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1341 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1342 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1373 >gi|114654613|ref|XP_001154199.1| PREDICTED: dicer1 isoform 3 [Pan troglodytes] gi|114654615|ref|XP_001154247.1| PREDICTED: dicer1 isoform 4 [Pan troglodytes] gi|114654617|ref|XP_001154306.1| PREDICTED: dicer1 isoform 5 [Pan troglodytes] gi|114654619|ref|XP_001154369.1| PREDICTED: endoribonuclease Dicer isoform 6 [Pan troglodytes] Length = 1922 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E + K Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1899 IAKSAAARRALR 1910 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372 >gi|114654611|ref|XP_001154010.1| PREDICTED: dicer1 isoform 1 [Pan troglodytes] Length = 1930 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E + K Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1899 IAKSAAARRALR 1910 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372 >gi|109084784|ref|XP_001100868.1| PREDICTED: endoribonuclease Dicer [Macaca mulatta] Length = 1920 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1664 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1723 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1724 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1783 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E + K Sbjct: 1784 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1843 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1844 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1896 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1897 IAKSAAARRALR 1908 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1281 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1338 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1339 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1370 >gi|29294649|ref|NP_085124.2| endoribonuclease Dicer isoform 1 [Homo sapiens] gi|29294651|ref|NP_803187.1| endoribonuclease Dicer isoform 1 [Homo sapiens] gi|257051056|sp|Q9UPY3|DICER_HUMAN RecName: Full=Endoribonuclease Dicer; AltName: Full=Helicase with RNase motif; Short=Helicase MOI gi|20521696|dbj|BAA76772.2| KIAA0928 protein [Homo sapiens] gi|119602002|gb|EAW81596.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Homo sapiens] gi|152012889|gb|AAI50288.1| Dicer 1, ribonuclease type III [Homo sapiens] gi|307685563|dbj|BAJ20712.1| dicer 1, ribonuclease type III [synthetic construct] Length = 1922 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E + K Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1899 IAKSAAARRALR 1910 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372 >gi|21665773|emb|CAB38857.2| hypothetical helicase K12H4.8-like protein [Homo sapiens] Length = 1912 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1656 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1715 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1716 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1775 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E + K Sbjct: 1776 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1835 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1836 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1888 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1889 IAKSAAARRALR 1900 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1273 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1330 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1331 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1362 >gi|5019620|dbj|BAA78691.1| helicase-MOI [Homo sapiens] Length = 1924 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1668 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1727 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1728 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1787 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E + K Sbjct: 1788 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1847 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1848 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1900 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1901 IAKSAAARRALR 1912 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1285 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1342 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1343 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1374 >gi|74204500|dbj|BAE23515.1| unnamed protein product [Mus musculus] Length = 514 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 258 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 317 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 318 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 377 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ EV + K Sbjct: 378 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 437 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 438 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 490 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 491 IAKSAAARRALR 502 >gi|193216954|ref|YP_002000196.1| ribonuclease III [Mycoplasma arthritidis 158L3-1] gi|193002277|gb|ACF07492.1| ribonuclease III [Mycoplasma arthritidis 158L3-1] Length = 222 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 9/212 (4%) Query: 16 AFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 + K+LTH S S ++ +YE LEFLGD +L S +F +F EGE + Sbjct: 11 KIRRPEFVFKSLTHKSFDQSDHFKFNYEYLEFLGDAVLEFYTSDRIFQNFPKYTEGEATR 70 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF-MTSIQADVVESLIAALYLDGGI 132 +VS E +++A ++ L R + +++ + + + +D+ ES I ALY GI Sbjct: 71 HRQMIVSNENLAKIAHKIGLVEIARFGKKVFEEIKNIPNSKVFSDMFESFIGALYFGLGI 130 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF-GVTPEYKVTFRSGPDHDPRFTV 191 ++D L +D K+ QE A Y + ++ F Sbjct: 131 GPTFQYLDSVLLDSVLNVID-SKDPKSYFQEIIQANGNLSRLRYVTVAQ----NNGEFKS 185 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + G SK+ AE+ AA LK+ Sbjct: 186 ELLVDQKVFGVGYGHSKKQAEKAAAISALKKM 217 >gi|100271808|gb|ABF69304.1| ribonuclease III [Ehrlichia ruminantium] gi|100271814|gb|ABF69308.1| ribonuclease III [Ehrlichia ruminantium] gi|100271820|gb|ABF69312.1| ribonuclease III [Ehrlichia ruminantium] gi|100271823|gb|ABF69314.1| ribonuclease III [Ehrlichia ruminantium] gi|100271826|gb|ABF69316.1| ribonuclease III [Ehrlichia ruminantium] gi|100271829|gb|ABF69318.1| ribonuclease III [Ehrlichia ruminantium] gi|100271835|gb|ABF69322.1| ribonuclease III [Ehrlichia ruminantium] gi|100271847|gb|ABF69330.1| ribonuclease III [Ehrlichia ruminantium] gi|108951328|gb|ABG25048.1| ribonuclease III [Ehrlichia ruminantium] gi|108951331|gb|ABG25050.1| ribonuclease III [Ehrlichia ruminantium] Length = 137 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 49/131 (37%), Positives = 73/131 (55%) Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 +L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK A Sbjct: 1 NLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I+ +K+ A Sbjct: 61 VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATGHNKKLA 120 Query: 212 EQVAAAEVLKR 222 EQ AA+ +L + Sbjct: 121 EQKAASLMLAK 131 >gi|32488296|emb|CAE03362.1| OSJNBb0065L13.5 [Oryza sativa Japonica Group] gi|116311061|emb|CAH67991.1| OSIGBa0157K09-H0214G12.2 [Oryza sativa Indica Group] Length = 1604 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 92/244 (37%), Gaps = 24/244 (9%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ IGY F ++ LL +A H S S Y+RLEFLGD +L +I++ L+ Sbjct: 1156 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 1215 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------VSSDLRKDVCSFM 111 + + K G+++ + V ++ + A E + + +S S Sbjct: 1216 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 1275 Query: 112 ----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160 D+VES I A+ LD G + + V + L + E Sbjct: 1276 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 1335 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219 L+E K G H V V I + + +AA + AA E Sbjct: 1336 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 1392 Query: 220 LKRE 223 L + Sbjct: 1393 LSKL 1396 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 40/140 (28%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI--- 97 ER E LGD L ++ F ++ EG+L+ R + +V+ +++ L +I Sbjct: 990 ERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQ 1049 Query: 98 ------------------------RVSSDLRKDVCSFM-------------TSIQADVVE 120 R+ + ADVVE Sbjct: 1050 QFEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNLRCTRSHHWLHRKVIADVVE 1109 Query: 121 SLIAALYLDGGIEVAGTFVD 140 SLI A ++GG + A F+ Sbjct: 1110 SLIGAFLVEGGFKAAFAFLH 1129 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPAQGMDC-SKR 209 A++ L E A + PE+K+ GP H +FT VVVEI G L K+ Sbjct: 1517 ARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQKK 1576 Query: 210 AAEQVAAAEV---LKREG 224 AA++ AA LK+ G Sbjct: 1577 AAQEHAAQGALWCLKQLG 1594 >gi|195443910|ref|XP_002069632.1| GK11626 [Drosophila willistoni] gi|194165717|gb|EDW80618.1| GK11626 [Drosophila willistoni] Length = 2281 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 97/257 (37%), Gaps = 49/257 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 2025 FEEFEAILGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2084 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 2085 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISE 2144 Query: 112 ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151 DV ES+ A++LD + +V K + Sbjct: 2145 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMKPEIEQFS 2204 Query: 152 KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K+ ++E AKFG D R V V++ +G+ Sbjct: 2205 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2254 Query: 207 SKRAAEQVAAAEVLKRE 223 + R A+ AA L++ Sbjct: 2255 NYRIAKCTAAKCALRQL 2271 Score = 64.7 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1739 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1796 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1797 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1852 >gi|195331135|ref|XP_002032258.1| GM23619 [Drosophila sechellia] gi|194121201|gb|EDW43244.1| GM23619 [Drosophila sechellia] Length = 2249 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 49/257 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1993 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2052 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 2053 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2112 Query: 112 ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151 DV ES+ A++LD + +V + Sbjct: 2113 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2172 Query: 152 KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K+ ++E AKFG D R V V++ +G+ Sbjct: 2173 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2222 Query: 207 SKRAAEQVAAAEVLKRE 223 + R A+ AA L++ Sbjct: 2223 NYRIAKCTAAKCALRQL 2239 Score = 65.1 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1714 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1771 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1772 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1827 >gi|17738129|ref|NP_524453.1| Dicer-1 [Drosophila melanogaster] gi|51316117|sp|Q9VCU9|DCR1_DROME RecName: Full=Endoribonuclease Dcr-1; Short=Protein dicer-1 gi|7300916|gb|AAF56056.1| Dicer-1 [Drosophila melanogaster] Length = 2249 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 49/257 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1993 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2052 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 2053 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISE 2112 Query: 112 ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151 DV ES+ A++LD + +V + Sbjct: 2113 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2172 Query: 152 KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K+ ++E AKFG D R V V++ +G+ Sbjct: 2173 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2222 Query: 207 SKRAAEQVAAAEVLKRE 223 + R A+ AA L++ Sbjct: 2223 NYRIAKCTAAKCALRQL 2239 Score = 65.1 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1714 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1771 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1772 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1827 >gi|251764670|sp|A7LFZ6|DCL4_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 4; AltName: Full=Dicer-like protein 4; Short=OsDCL4; AltName: Full=Protein SHOOT ORGANIZATION 1 gi|152926631|gb|ABS32306.1| dicer-like protein [Oryza sativa Japonica Group] Length = 1657 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 92/244 (37%), Gaps = 24/244 (9%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ IGY F ++ LL +A H S S Y+RLEFLGD +L +I++ L+ Sbjct: 1209 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 1268 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------VSSDLRKDVCSFM 111 + + K G+++ + V ++ + A E + + +S S Sbjct: 1269 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 1328 Query: 112 ----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160 D+VES I A+ LD G + + V + L + E Sbjct: 1329 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 1388 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219 L+E K G H V V I + + +AA + AA E Sbjct: 1389 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 1445 Query: 220 LKRE 223 L + Sbjct: 1446 LSKL 1449 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 40/140 (28%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ER E LGD L ++ F ++ EG+L+ R + +V+ +++ L +IR Sbjct: 1043 ERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQ 1102 Query: 101 SDL----------------------------------------RKDVCSFMTSIQADVVE 120 + + ADVVE Sbjct: 1103 QFEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNLRCTRSHHWLHRKVIADVVE 1162 Query: 121 SLIAALYLDGGIEVAGTFVD 140 SLI A ++GG + A F+ Sbjct: 1163 SLIGAFLVEGGFKAAFAFLH 1182 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPAQGMDC-SKR 209 A++ L E A + PE+K+ GP H +FT VVVEI G L K+ Sbjct: 1570 ARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQKK 1629 Query: 210 AAEQVAAAEV---LKREG 224 AA++ AA LK+ G Sbjct: 1630 AAQEHAAQGALWCLKQLG 1647 >gi|294660491|ref|NP_853275.2| ribonuclease 3 [Mycoplasma gallisepticum str. R(low)] gi|284812153|gb|AAP56843.2| Ribonuclease 3 (Ribonuclease III) [Mycoplasma gallisepticum str. R(low)] gi|284930761|gb|ADC30700.1| Ribonuclease 3 (Ribonuclease III) [Mycoplasma gallisepticum str. R(high)] gi|284931334|gb|ADC31272.1| Ribonuclease 3 (Ribonuclease III) [Mycoplasma gallisepticum str. F] Length = 655 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 12/226 (5%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLL 59 A L K+ N L E+ALTH+S ++ + +Y+RLEFLGD I+ +++ L Sbjct: 428 EAKDLELLLKKFKVVTNNIGLYEEALTHNSYANEMHLKYNYQRLEFLGDAIINKIVAEYL 487 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 FNH + EGE++ ++ + T + A +L+L ++IRV L+ + I D+ Sbjct: 488 FNH-SDSSEGEMTKDRIKIIQSNTLIKAATQLELINYIRVGEGLK--IAPLSPKILEDIF 544 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFG-VTPEY-K 176 E+ I A+YLD G ++ K D K+ QE H+ + Y + Sbjct: 545 EAFIGAMYLDQGEYAVRKILNDTIIGYYQKGQLTENTDYKSIFQEIIHSTGLNMKIHYER 604 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 R H TV + G+ +G D S AE AA E + + Sbjct: 605 TYDRQKNLH----TVSLYAGGIMYGEGKDSSTHKAEIKAAKEAISK 646 >gi|321461347|gb|EFX72380.1| hypothetical protein DAPPUDRAFT_308316 [Daphnia pulex] Length = 1741 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 103/248 (41%), Gaps = 42/248 (16%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + E++I Y F +RS L +A +H+S + + Y+RLEFLGD +L LI+ L+ + Sbjct: 1490 FESFEEKICYKFNDRSYLLQAFSHASYYLNRLTDCYQRLEFLGDAVLDYLITRYLYENLP 1549 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS--------------- 109 G L+ ++LV+ T + +A + + + S + Sbjct: 1550 RHPPGALTDLRSALVNNTTFAVLAERYEFHRYFKHLSPSLNQIMDKFIKAQEENGHSINE 1609 Query: 110 ----------FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AK 158 + + DV ES+ A+YLD + + + Y+ + +F ++ K Sbjct: 1610 EYYMIEAEDVEVPKVLGDVFESVAGAIYLDSHMSLNAVW-RVYYNMMKKEIDEFSKNVPK 1668 Query: 159 TELQEWA-----HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + ++E KFG PD R V V++ G +G+ + R A+ Sbjct: 1669 SPIRELLELETDRVKFGK-------AERLPDG--RLRVTVDVIGKGTFKGIGRNYRIAKC 1719 Query: 214 VAAAEVLK 221 AA L+ Sbjct: 1720 TAAKYALR 1727 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +A T SS + + ERLE +GD L I+T L+ + S EGELS + V Sbjct: 1239 PSVILQAFTMSSANDGI--NLERLETIGDSFLKYAITTYLYCKYSSIHEGELSHLRSRQV 1296 Query: 80 SAETCSQVARELDLASFI 97 S Q+ ++ + Sbjct: 1297 SNLHLYQLGKKKLFGGCM 1314 >gi|6102924|emb|CAB59269.1| hypothetical protein [Homo sapiens] Length = 525 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 269 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 328 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 329 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 388 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E + K Sbjct: 389 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 448 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 449 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 501 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 502 IAKSAAAKRALR 513 >gi|254281220|ref|NP_001123390.2| endoribonuclease Dicer [Xenopus (Silurana) tropicalis] gi|238064965|sp|B3DLA6|DICER_XENTR RecName: Full=Endoribonuclease Dicer gi|169261418|gb|ACA52289.1| endoribonuclease [Xenopus tropicalis] Length = 1893 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1637 FENFEKKINYPFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1696 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1697 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGM 1756 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E + K Sbjct: 1757 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWHVYYPMMQPLIEKF 1816 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1817 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1869 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1870 IAKSAAARRALR 1881 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1270 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1327 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1328 VSNCNLYRLGKKKG 1341 >gi|78780081|ref|YP_398193.1| RNAse III [Prochlorococcus marinus str. MIT 9312] gi|78713580|gb|ABB50757.1| RNAse III [Prochlorococcus marinus str. MIT 9312] Length = 249 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 101/225 (44%), Gaps = 9/225 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + R+S + ++ + +A HSS +YE+LEF GD +L L S + Sbjct: 23 KSERFSEIIRKQNISVIQD--FNQAFIHSS--EDKIINYEKLEFFGDAVLRLAASNFIEK 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ GE S +VS E +++ R++D+ I D S T I + E+ Sbjct: 79 NYPQMSVGERSELRAQIVSDEWLTKLGRKIDIEKLIIKGPKALGDQNSKNT-IIGEATEA 137 Query: 122 LIAALY-LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 LI A+Y I+ ++D W++ ++ +KT LQEW +K P YK+ Sbjct: 138 LIGAVYKCFNSIQEVNLWLDDIWEEDSEIFLKAPYKFKSKTVLQEWCQSKGFDLPVYKII 197 Query: 179 FRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 S + D RF+ + + GL + S + AE AA ++++ Sbjct: 198 EVSKKNGDPKRFSCDIFVEGLKESSAFGKSHKQAETNAAKVLIEK 242 >gi|19072784|gb|AAL84637.1|AF484523_1 endoribonuclease Dicer [Mus musculus] Length = 361 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 105 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 164 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 165 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 224 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ EV + K Sbjct: 225 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 284 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 285 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 337 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 338 IAKSAAARRALR 349 >gi|194225335|ref|XP_001496219.2| PREDICTED: similar to Endoribonuclease Dicer (Helicase with RNase motif) (Helicase MOI) [Equus caballus] Length = 1785 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 100/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1529 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1588 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1589 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1648 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E+ + K Sbjct: 1649 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1708 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1709 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1761 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1762 IAKSAAARRALR 1773 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1158 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1215 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1216 VSNCNLYRLGKKKGLPSRMVVS 1237 >gi|157279689|dbj|BAF80150.1| SHOOT ORGANIZATION1 [Oryza sativa Japonica Group] Length = 1631 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 92/244 (37%), Gaps = 24/244 (9%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ IGY F ++ LL +A H S S Y+RLEFLGD +L +I++ L+ Sbjct: 1183 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 1242 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------VSSDLRKDVCSFM 111 + + K G+++ + V ++ + A E + + +S S Sbjct: 1243 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 1302 Query: 112 ----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160 D+VES I A+ LD G + + V + L + E Sbjct: 1303 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 1362 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219 L+E K G H V V I + + +AA + AA E Sbjct: 1363 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 1419 Query: 220 LKRE 223 L + Sbjct: 1420 LSKL 1423 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 40/140 (28%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI--- 97 ER E LGD L ++ F ++ EG+L+ R + +V+ +++ L +I Sbjct: 1017 ERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQ 1076 Query: 98 ------------------------RVSSDLRKDVCSFM-------------TSIQADVVE 120 R+ + ADVVE Sbjct: 1077 QFEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNLRCTRSHHWLHRKVIADVVE 1136 Query: 121 SLIAALYLDGGIEVAGTFVD 140 SLI A ++GG + A F+ Sbjct: 1137 SLIGAFLVEGGFKAAFAFLH 1156 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPAQGMDC-SKR 209 A++ L E A + PE+K+ GP H +FT VVVEI G L K+ Sbjct: 1544 ARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQKK 1603 Query: 210 AAEQVAAAEV---LKREG 224 AA++ AA LK+ G Sbjct: 1604 AAQEHAAQGALWCLKQLG 1621 >gi|73963946|ref|XP_868526.1| PREDICTED: similar to dicer1 isoform 4 [Canis familiaris] Length = 1900 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 100/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1644 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1703 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1704 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1763 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E+ + K Sbjct: 1764 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1823 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1824 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1876 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1877 IAKSAAARRALR 1888 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1352 VSNCNLYRLGKKKGLPSRMVVS 1373 >gi|73963940|ref|XP_537547.2| PREDICTED: similar to dicer1 isoform 1 [Canis familiaris] Length = 1923 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 100/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E+ + K Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1846 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1847 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1899 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1900 IAKSAAARRALR 1911 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1352 VSNCNLYRLGKKKGLPSRMVVS 1373 >gi|73963944|ref|XP_868522.1| PREDICTED: similar to Endoribonuclease Dicer (Helicase with RNase motif) (Helicase-MOI) isoform 3 [Canis familiaris] Length = 821 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 100/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 565 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 624 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 625 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 684 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E+ + K Sbjct: 685 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 744 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 745 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 797 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 798 IAKSAAARRALR 809 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 192 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 249 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 250 VSNCNLYRLGKKKGLPSRMVVS 271 >gi|308237838|ref|NP_001184123.1| endoribonuclease Dicer [Sus scrofa] gi|307715909|gb|ADN88174.1| dicer [Sus scrofa] Length = 1915 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E++I Y+F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1659 FENFERKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1718 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1719 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1778 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ EV + K Sbjct: 1779 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1838 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1839 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1891 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1892 IAKSAAARRALR 1903 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 6/91 (6%) Query: 14 GYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 GY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG Sbjct: 1282 GYSPRTPGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEG 1339 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVS 100 LS + VS ++ ++ L S + VS Sbjct: 1340 RLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1370 >gi|218195189|gb|EEC77616.1| hypothetical protein OsI_16596 [Oryza sativa Indica Group] Length = 1576 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 92/244 (37%), Gaps = 24/244 (9%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ IGY F ++ LL +A H S S Y+RLEFLGD +L +I++ L+ Sbjct: 1128 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 1187 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------VSSDLRKDVCSFM 111 + + K G+++ + V ++ + A E + + +S S Sbjct: 1188 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 1247 Query: 112 ----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160 D+VES I A+ LD G + + V + L + E Sbjct: 1248 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 1307 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219 L+E K G H V V I + + +AA + AA E Sbjct: 1308 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 1364 Query: 220 LKRE 223 L + Sbjct: 1365 LSKL 1368 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 40/140 (28%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ER E LGD L ++ F ++ EG+L+ R + +V+ +++ L +IR Sbjct: 962 ERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQ 1021 Query: 101 SDL----------------------------------------RKDVCSFMTSIQADVVE 120 + + ADVVE Sbjct: 1022 QFEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNLRCTRSHHWLHRKVIADVVE 1081 Query: 121 SLIAALYLDGGIEVAGTFVD 140 SLI A ++GG + A F+ Sbjct: 1082 SLIGAFLVEGGFKAAFAFLH 1101 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPAQGMDC-SKR 209 A++ L E A + PE+K+ GP H +FT VVVEI G L K+ Sbjct: 1489 ARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQKK 1548 Query: 210 AAEQVAAAEV---LKREG 224 AA++ AA LK+ G Sbjct: 1549 AAQEHAAQGALWCLKQLG 1566 >gi|328716579|ref|XP_001944314.2| PREDICTED: endoribonuclease Dcr-1-like isoform 1 [Acyrthosiphon pisum] Length = 1609 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 62/250 (24%), Positives = 104/250 (41%), Gaps = 43/250 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + E+ +GY F +RS L +A+TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1357 FESFEQHLGYHFQDRSYLLQAMTHASYYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 1416 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110 G L+ ++LV+ + +A + + +S L VC F Sbjct: 1417 QHSPGALTDLRSALVNNTIFASLAVRNGFHKYFKHLSPGLSDVVCRFVTIQEENGHTIDE 1476 Query: 111 -----------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 + DV ES+ A+YLD + + + Y K + +F Sbjct: 1477 EFYFLGEDDCEEAEDVEVPKALGDVFESVAGAIYLDSNMSLDTVW-KVYHKIMENEMEQF 1535 Query: 154 RRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH---DPRFTVVVEISGLAPAQGMDCSKR 209 ++ K+ ++E + PE S P+ R VVVEI G +G+ + R Sbjct: 1536 SKNVPKSPIRELL----ELEPE--TAKFSKPEKLADGRRVRVVVEIFGKGEFKGIGRNYR 1589 Query: 210 AAEQVAAAEV 219 A+ AA Sbjct: 1590 IAKCTAAKCA 1599 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S+L +ALT S+ + + ERLE +GD L I+ L+ D+ EG+LS + V Sbjct: 1124 PSVLLQALTMSNANDGI--NLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQV 1181 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVC 108 S ++ + + + D Sbjct: 1182 SNLNLYRLGKLKMFGERMISTKFEPHDNW 1210 >gi|58382645|ref|XP_312076.2| AGAP002836-PA [Anopheles gambiae str. PEST] gi|55241936|gb|EAA07793.2| AGAP002836-PA [Anopheles gambiae str. PEST] Length = 2256 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 63/276 (22%), Positives = 104/276 (37%), Gaps = 68/276 (24%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S S + + Y+RLEFLGD IL LI+ L+ Sbjct: 1979 FEEFEQALGYRFRDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRR 2038 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSF------------- 110 G L+ ++LV+ + +A + + +S L++ + F Sbjct: 2039 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFLHLSPGLQEVIDRFVRIQQENGHRITE 2098 Query: 111 ------------------------------------MTSIQADVVESLIAALYLDG--GI 132 + DV ES+ A++LD + Sbjct: 2099 EEYYLPDEDDELGEYGAMGEDGPGEGRGVGEAEDVEVPKALGDVFESIAGAIFLDSDMSL 2158 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDP 187 + K K K+ ++E AKFG PE K+T Sbjct: 2159 DTVWKVYRKMMGPEIEKFSSSV--PKSPIRELLEMEPETAKFGK-PE-KLTDG------R 2208 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 R V VE+ G +G+ + R A+ AA L++ Sbjct: 2209 RVRVTVEVFGKGTFRGIGRNYRIAKCTAAKCALRQL 2244 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +++ +ALT S+ + + ERLE +GD L I+T L+ +D+ EG+LS + V Sbjct: 1664 PAIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCRYDNVHEGKLSHLRSKQV 1721 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVC 108 S ++ R L + + D Sbjct: 1722 SNLNLYRLGRRKRLGDCMIAAKFEPHDNW 1750 >gi|29424049|gb|AAO73809.1| dicer-1 [Anopheles gambiae] Length = 2259 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 63/276 (22%), Positives = 104/276 (37%), Gaps = 68/276 (24%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S S + + Y+RLEFLGD IL LI+ L+ Sbjct: 1982 FEEFEQALGYRFRDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRR 2041 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSF------------- 110 G L+ ++LV+ + +A + + +S L++ + F Sbjct: 2042 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFLHLSPGLQEVIDRFVRIQQENGHRITE 2101 Query: 111 ------------------------------------MTSIQADVVESLIAALYLDG--GI 132 + DV ES+ A++LD + Sbjct: 2102 EEYYLPDEDDELGEYGAMGEDGPGEGRGVGEAEDVEVPKALGDVFESIAGAIFLDSDMSL 2161 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDP 187 + K K K+ ++E AKFG PE K+T Sbjct: 2162 DTVWKVYRKMMGPEIEKFSSSV--PKSPIRELLEMEPETAKFGK-PE-KLTDG------R 2211 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 R V VE+ G +G+ + R A+ AA L++ Sbjct: 2212 RVRVTVEVFGKGTFRGIGRNYRIAKCTAAKCALRQL 2247 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +++ +ALT S+ + + ERLE +GD L I+T L+ +D+ EG+LS + V Sbjct: 1664 PAIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCRYDNVHEGKLSHLRSKQV 1721 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVC 108 S ++ R L + + D Sbjct: 1722 SNLNLYRLGRRKRLGDCMIAAKFEPHDNW 1750 >gi|195502701|ref|XP_002098342.1| GE24009 [Drosophila yakuba] gi|194184443|gb|EDW98054.1| GE24009 [Drosophila yakuba] Length = 2250 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 49/257 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1994 FDEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2053 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 2054 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2113 Query: 112 ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151 DV ES+ A++LD + +V + Sbjct: 2114 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2173 Query: 152 KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K+ ++E AKFG D R V V++ +G+ Sbjct: 2174 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2223 Query: 207 SKRAAEQVAAAEVLKRE 223 + R A+ AA L++ Sbjct: 2224 NYRIAKCTAAKCALRQL 2240 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1715 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1772 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1773 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1828 >gi|193582606|ref|XP_001943370.1| PREDICTED: endoribonuclease Dcr-1-like [Acyrthosiphon pisum] Length = 1626 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 45/255 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + E+ +GY F +RS L +A+TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1374 FESFEQHLGYYFQDRSYLLQAMTHASYYPNCLTDCYQRLEFLGDAVLDYLITRHLYEDKR 1433 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A + +++ +S L + V F+ Sbjct: 1434 RHPPGALTDLRSALVNNTIFASLAVKNGFHKYLKHLSPGLSEVVYRFVAIQEENGHTIDE 1493 Query: 112 ------------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALK--S 150 + D+ ES+ A+YLD + + + V + +K S Sbjct: 1494 EFCFSGEDDFEDAEDVEAPKVLGDIFESVAGAIYLDSNMSLDAVWKVYHKIMENEIKQFS 1553 Query: 151 GKFRRDAKTELQEWA--HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 EL E AKF PE V R V+VEI G +G+ + Sbjct: 1554 KNVPISPVRELLELEPNTAKFSK-PEKLVDG-------RRVRVIVEILGKGVFKGIGRNY 1605 Query: 209 RAAEQVAAAEVLKRE 223 R A+ AA L Sbjct: 1606 RIAKCTAAKCALNHL 1620 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 28/157 (17%) Query: 9 LEKRIGYAFA-NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 + + Y + S+L +ALT + + ERLE +GD L ++ L+ ++ Sbjct: 1176 FQPDLNYHPGPSPSILLQALT--TANAIDGYDLERLETIGDSFLKYAVTAYLYCTHNNVH 1233 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL----------------RKDVCSFM 111 EG LS ++ VS ++ + + + K V + Sbjct: 1234 EGILSDLRSNHVSNLNLYRLGKLKMFGERMISTKFEPRSNWLPPCYIGPHKLEKAVINSN 1293 Query: 112 TSI---------QADVVESLIAALYLDGGIEVAGTFV 139 SI AD VE+LI A + G A F+ Sbjct: 1294 ISITQHITNDKSIADCVEALIGAYLISCGTRGALLFM 1330 >gi|115459356|ref|NP_001053278.1| Os04g0509300 [Oryza sativa Japonica Group] gi|113564849|dbj|BAF15192.1| Os04g0509300 [Oryza sativa Japonica Group] Length = 1090 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 92/244 (37%), Gaps = 24/244 (9%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ IGY F ++ LL +A H S S Y+RLEFLGD +L +I++ L+ Sbjct: 642 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 701 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------VSSDLRKDVCSFM 111 + + K G+++ + V ++ + A E + + +S S Sbjct: 702 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 761 Query: 112 ----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160 D+VES I A+ LD G + + V + L + E Sbjct: 762 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 821 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219 L+E K G H V V I + + +AA + AA E Sbjct: 822 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 878 Query: 220 LKRE 223 L + Sbjct: 879 LSKL 882 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 40/140 (28%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI--- 97 ER E LGD L ++ F ++ EG+L+ R + +V+ +++ L +I Sbjct: 476 ERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQ 535 Query: 98 ------------------------RVSSDLRKDVCSFM-------------TSIQADVVE 120 R+ + ADVVE Sbjct: 536 QFEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNLRCTRSHHWLHRKVIADVVE 595 Query: 121 SLIAALYLDGGIEVAGTFVD 140 SLI A ++GG + A F+ Sbjct: 596 SLIGAFLVEGGFKAAFAFLH 615 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPAQGMDC-SKR 209 A++ L E A + PE+K+ GP H +FT VVVEI G L K+ Sbjct: 1003 ARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQKK 1062 Query: 210 AAEQVAAAEV---LKREG 224 AA++ AA LK+ G Sbjct: 1063 AAQEHAAQGALWCLKQLG 1080 >gi|195572986|ref|XP_002104476.1| Dicer-1 [Drosophila simulans] gi|194200403|gb|EDX13979.1| Dicer-1 [Drosophila simulans] Length = 1533 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 49/257 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1277 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1336 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 1337 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 1396 Query: 112 ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151 DV ES+ A++LD + +V + Sbjct: 1397 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 1456 Query: 152 KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K+ ++E AKFG D R V V++ +G+ Sbjct: 1457 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 1506 Query: 207 SKRAAEQVAAAEVLKRE 223 + R A+ AA L++ Sbjct: 1507 NYRIAKCTAAKCALRQL 1523 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 998 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1055 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1056 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1111 >gi|109478606|ref|XP_001068155.1| PREDICTED: dicer 1, ribonuclease type III [Rattus norvegicus] gi|109479876|ref|XP_001069041.1| PREDICTED: dicer 1, ribonuclease type III [Rattus norvegicus] gi|149025439|gb|EDL81806.1| rCG20888 [Rattus norvegicus] Length = 1918 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 100/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1662 FENFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1721 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1722 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1781 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ EV + K Sbjct: 1782 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1841 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1842 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1894 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1895 IAKSAAARRALR 1906 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1350 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1351 VSNCNLYRLGKKQGLPSRMVVS 1372 >gi|195143531|ref|XP_002012751.1| GL23778 [Drosophila persimilis] gi|194101694|gb|EDW23737.1| GL23778 [Drosophila persimilis] Length = 2278 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 96/257 (37%), Gaps = 49/257 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 2022 FEEFEASLGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2081 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 2082 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2141 Query: 112 ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151 DV ES+ A++LD + +V + Sbjct: 2142 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2201 Query: 152 KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K+ ++E AKFG D R V V++ +G+ Sbjct: 2202 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2251 Query: 207 SKRAAEQVAAAEVLKRE 223 + R A+ AA L++ Sbjct: 2252 NYRIAKCTAAKCALRQL 2268 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1738 ELVGHPGPSPSVILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1795 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1796 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1851 >gi|296475171|gb|DAA17286.1| endoribonuclease Dicer [Bos taurus] Length = 1922 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E + K Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1847 SANVPRSPVRELLEMEPEITKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1899 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1900 IAKSAAARRALR 1911 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 3/83 (3%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL-LFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T+ L A EG LS + Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTVSLSALILDAHEGRLSYMRSK 1350 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVS 1373 >gi|42733596|ref|NP_976235.1| endoribonuclease Dicer [Bos taurus] gi|257051053|sp|Q6TUI4|DICER_BOVIN RecName: Full=Endoribonuclease Dicer gi|38679195|gb|AAR26432.1| dicer [Bos taurus] Length = 1923 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E + K Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1847 SANVPRSPVRELLEMEPEITKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1899 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1900 IAKSAAARRALR 1911 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 3/83 (3%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL-LFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T+ L A EG LS + Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTVSLSALILDAHEGRLSYMRSK 1350 Query: 78 LVSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVS 1373 >gi|125773725|ref|XP_001358121.1| GA18437 [Drosophila pseudoobscura pseudoobscura] gi|54637856|gb|EAL27258.1| GA18437 [Drosophila pseudoobscura pseudoobscura] Length = 2280 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 96/257 (37%), Gaps = 49/257 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 2024 FEEFEASLGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2083 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 2084 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2143 Query: 112 ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151 DV ES+ A++LD + +V + Sbjct: 2144 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2203 Query: 152 KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K+ ++E AKFG D R V V++ +G+ Sbjct: 2204 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2253 Query: 207 SKRAAEQVAAAEVLKRE 223 + R A+ AA L++ Sbjct: 2254 NYRIAKCTAAKCALRQL 2270 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1740 ELVGHPGPSPSVILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1797 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1798 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1853 >gi|167538060|ref|XP_001750696.1| hypothetical protein [Monosiga brevicollis MX1] gi|163770830|gb|EDQ84509.1| predicted protein [Monosiga brevicollis MX1] Length = 603 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 19/224 (8%) Query: 15 YAFANRSLLEK----ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 Y+ AN + + + ALTH S + + Q S ERLEFLGDR+L L + L++ F EG Sbjct: 289 YSAANITYVLERTRPALTHGSRASAEQPSNERLEFLGDRVLNLAAAEHLYHAFPKEGEGV 348 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ + +++V+A+ +A+ L L I+V + T + D VE+L+ A+ LDG Sbjct: 349 LTKKLSAMVNAQALHGMAKRLKLDQHIQVIEGVDLS---ERTRVLGDAVEALLGAILLDG 405 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA-KFGVTPEYKVTFRSGPDHDPRF 189 G A W ++ R + K LQ A + P Y + + Sbjct: 406 GWPAALAVTHHLW---SISHTPTRTNFKEALQILAQKFEPHELPIYTPRGCDESESVRTW 462 Query: 190 TVVVEISG--------LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 V VE + G S +AAEQ AA VLK+ I Sbjct: 463 HVRVEANLPSSWWGPIQLMGHGQGTSIKAAEQAAAISVLKQLNI 506 >gi|225462996|ref|XP_002264486.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296084589|emb|CBI25610.3| unnamed protein product [Vitis vinifera] Length = 1623 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 107/245 (43%), Gaps = 29/245 (11%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S+ LEK +G+ F ++ LL +A+ H S + Y+RLEFLGD +L LI++ L++ Sbjct: 1195 SSTDVPALEKLLGHEFLHKGLLLQAIVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYS 1254 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----VSSDLRK----------- 105 + K G+++ + V+ ++ + VA L F+ +S ++K Sbjct: 1255 VYPKLKPGQMTDLRSLSVNNKSFANVAVSRSLHEFLICDASSLSEAIKKYVDFIRTPTLD 1314 Query: 106 ---DVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTEL 161 D+VES + A+ LD G ++ + + R + + + EL Sbjct: 1315 KDLHEGPKCPKALGDLVESCMGAILLDKGFDLNHAWNIMLSILDRIMSFSDLQLNPIREL 1374 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---AQGMDCSKRAAEQVAAAE 218 QE ++ + + G F V ++SG A + +++ A ++A+ + Sbjct: 1375 QELCQHHNWDL-QFPTSKQGG-----TFLVEAKVSGDDICTTASATNANRKDARRIASNQ 1428 Query: 219 VLKRE 223 + K+ Sbjct: 1429 LFKKL 1433 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 37/137 (27%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98 ERLE LGD L + LF +D+ EGEL+ R +++V+ ++A +L +IR Sbjct: 1031 ERLEVLGDAFLKFAVGRRLFLLYDALDEGELTRRRSNVVNNSNLFKLAVRRNLQVYIRDQ 1090 Query: 99 ---------VSS------------------------DLRKDVCSFM--TSIQADVVESLI 123 + ++R C ADVVE+L+ Sbjct: 1091 SFDPGQFFALGHRCPRICEKETEMAIHSRCGKTPTTEVRCSKCHHWLHKKTIADVVEALV 1150 Query: 124 AALYLDGGIEVAGTFVD 140 A +D G + A F+ Sbjct: 1151 GAFIVDSGFKAATVFLK 1167 Score = 38.1 bits (88), Expect = 0.96, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 K + E A + P ++ GP H FTV + + + G Sbjct: 1540 KARMYEICAANYWKPPSFECCKEEGPSHLKLFTVKLTMK-IEDGSG 1584 >gi|87240866|gb|ABD32724.1| Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] Length = 1939 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 30/237 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + ++ + LE + F ++ LL +++TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1596 LRSVDFDALEGALNIKFKDKGLLIESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1655 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFM-------- 111 + G L+ + V+ E ++V + +L +R S L K + F+ Sbjct: 1656 FSYTDLPPGRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKDFVKEVQDELS 1715 Query: 112 --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 + D++ES+ A++LD G A + V + + Sbjct: 1716 KPGFNSFGLGDCKAPKVLGDILESIAGAIFLDSGRNTAVVWKVFQPLLHPMVTPETLPMH 1775 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ELQE + EY+ R+G TV V I G+ + K+ A++ Sbjct: 1776 PVRELQERCQQQAEGL-EYRA-SRAGN----LATVEVFIDGVQVGAAQNPQKKMAQK 1826 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALT +S ++ YER E LGD L ++S LF EG+L+ +VS Sbjct: 1401 EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKHPQKHEGQLTRMRQQMVSNMVL 1458 Query: 85 SQVARELDLASFIR 98 + A L S+I Sbjct: 1459 YRYALSKGLQSYIL 1472 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 8/68 (11%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMDCSKRAAEQ 213 L + + P Y+ GP H RFT V ++ + M S + A+ Sbjct: 1865 LNDICLRRNWPMPFYRCVSEGGPAHAKRFTFAVRVNTTDKGWTDECVGEAM-PSVKKAKD 1923 Query: 214 VAAAEVLK 221 AA +L+ Sbjct: 1924 SAAVLLLE 1931 >gi|126290301|ref|XP_001367933.1| PREDICTED: similar to Dicer protein [Monodelphis domestica] Length = 1923 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 100/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1667 FENFEKKINYNFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E+ + K Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1846 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1847 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1899 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1900 IAKSAAARRALR 1911 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1296 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1353 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1354 VSNCNLYRLGKKKGLPSRMVVS 1375 >gi|326920976|ref|XP_003206741.1| PREDICTED: endoribonuclease Dicer-like [Meleagris gallopavo] Length = 1921 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y+F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1665 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1784 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E+ + K Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1897 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1898 IAKSAAARRALR 1909 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1352 VSNCNLYRLGKKKGLPSRMVVS 1373 >gi|254281274|ref|NP_001156875.1| endoribonuclease Dicer [Taeniopygia guttata] Length = 1921 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y+F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1665 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1784 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E+ + K Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1897 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1898 IAKSAAARRALR 1909 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1352 VSNCNLYRLGKKKGLPSRMVVS 1373 >gi|215694849|dbj|BAG90040.1| unnamed protein product [Oryza sativa Japonica Group] Length = 1058 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 92/244 (37%), Gaps = 24/244 (9%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ IGY F ++ LL +A H S S Y+RLEFLGD +L +I++ L+ Sbjct: 610 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 669 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------VSSDLRKDVCSFM 111 + + K G+++ + V ++ + A E + + +S S Sbjct: 670 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 729 Query: 112 ----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160 D+VES I A+ LD G + + V + L + E Sbjct: 730 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 789 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219 L+E K G H V V I + + +AA + AA E Sbjct: 790 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 846 Query: 220 LKRE 223 L + Sbjct: 847 LSKL 850 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 40/140 (28%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ER E LGD L ++ F ++ EG+L+ R + +V+ +++ L +IR Sbjct: 444 ERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQ 503 Query: 101 SDL----------------------------------------RKDVCSFMTSIQADVVE 120 + + ADVVE Sbjct: 504 QFEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNLRCTRSHHWLHRKVIADVVE 563 Query: 121 SLIAALYLDGGIEVAGTFVD 140 SLI A ++GG + A F+ Sbjct: 564 SLIGAFLVEGGFKAAFAFLH 583 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPAQGMDC-SKR 209 A++ L E A + PE+K+ GP H +FT VVVEI G L K+ Sbjct: 971 ARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQKK 1030 Query: 210 AAEQVAAAEV---LKREG 224 AA++ AA LK+ G Sbjct: 1031 AAQEHAAQGALWCLKQLG 1048 >gi|94957752|ref|NP_001035555.1| endoribonuclease Dicer [Gallus gallus] gi|257051054|sp|Q25BN1|DICER_CHICK RecName: Full=Endoribonuclease Dicer gi|90074858|dbj|BAE87103.1| Dicer protein [Gallus gallus] Length = 1921 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y+F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1665 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1784 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E+ + K Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1897 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1898 IAKSAAARRALR 1909 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1352 VSNCNLYRLGKKKGLPSRMVVS 1373 >gi|100271838|gb|ABF69324.1| ribonuclease III [Ehrlichia ruminantium] gi|100271841|gb|ABF69326.1| ribonuclease III [Ehrlichia ruminantium] Length = 137 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 49/131 (37%), Positives = 73/131 (55%) Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 +L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK A Sbjct: 1 NLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I+ +K+ A Sbjct: 61 VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVGINSHETLHATGHNKKLA 120 Query: 212 EQVAAAEVLKR 222 EQ AA+ +L + Sbjct: 121 EQKAASLMLAK 131 >gi|309355088|emb|CAP39460.2| CBR-DCR-1 protein [Caenorhabditis briggsae AF16] Length = 2030 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 62/260 (23%), Positives = 104/260 (40%), Gaps = 50/260 (19%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 +++ LE++IGY F +R+ L +A TH+S ++ Y+RLEFLGD +L +I+ LF Sbjct: 1760 FQFAQLEEKIGYRFKDRAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFED 1819 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSFM---------- 111 G L+ ++LV+ + +A + + FI + L + F+ Sbjct: 1820 VRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCGDRSFDT 1879 Query: 112 -------------------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQ 145 DV ES+ A+YLD G + T+ V + + Sbjct: 1880 NFNTEMYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTWQVIYHLMK 1939 Query: 146 RALKS--GKFRRDAKTELQEW--AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 +++ R EL E A+F + SG + V V++ Sbjct: 1940 GTIETCCANPPRSPIRELMELEGTKARFSKM---ERILESG-----KVRVTVDVGNNMRF 1991 Query: 202 QGMDCSKRAAEQVAAAEVLK 221 GM + R A+ AA LK Sbjct: 1992 TGMGRNYRIAKATAAKRALK 2011 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL ALT S+ S S ER E +GD L + L++ EG+LS + VS Sbjct: 1515 LLLTALTTSNASDGM--SLERFETIGDSFLKFATTDYLYHTLQEQHEGKLSWARSKEVSN 1572 Query: 82 ETCSQVARELDLASFI 97 ++ ++L + I Sbjct: 1573 CNLYRLGKKLGIPQLI 1588 >gi|240247227|emb|CAX68236.1| dicer-1 [Blattella germanica] Length = 2271 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 103/252 (40%), Gaps = 47/252 (18%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E+RI Y F +RS L ++LTH+S S + + Y+RLEFLGD +L LI+ L+ Sbjct: 2015 YDVFERRIRYKFRDRSYLLQSLTHASYSPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 2074 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A + R +S L + V F+ Sbjct: 2075 QHSPGALTDLRSALVNNTIFASLAVRYGFHKYFRHLSPGLNEVVDRFVRIQEENGHTISE 2134 Query: 112 ------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 DV ES+ A++LD G+ + + Y++ + +F Sbjct: 2135 EYYLIEEEECEEAEDVEVPKALGDVFESVAGAIFLDSGMSLDAVW-RVYYRMMKSEIEQF 2193 Query: 154 RRD-AKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K+ ++E AKFG D R V VE+ G +G+ + Sbjct: 2194 STNVPKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVEVFGKGTFKGIGRN 2245 Query: 208 KRAAEQVAAAEV 219 R A+ AA Sbjct: 2246 YRIAKCTAAKCA 2257 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +D+ EG+LS Sbjct: 1720 GHPGPSPSVILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSH 1777 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 + VS ++ R + + D Sbjct: 1778 LRSKQVSNLNLYRLGRRKVFGESMIATKFEPHDNW 1812 >gi|194910778|ref|XP_001982226.1| GG12488 [Drosophila erecta] gi|190656864|gb|EDV54096.1| GG12488 [Drosophila erecta] Length = 2249 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 49/257 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1993 FEVFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2052 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 2053 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2112 Query: 112 ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151 DV ES+ A++LD + +V + Sbjct: 2113 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2172 Query: 152 KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K+ ++E AKFG D R V V++ +G+ Sbjct: 2173 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2222 Query: 207 SKRAAEQVAAAEVLKRE 223 + R A+ AA L++ Sbjct: 2223 NYRIAKCTAAKCALRQL 2239 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1714 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1771 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1772 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1827 >gi|194744012|ref|XP_001954492.1| GF18290 [Drosophila ananassae] gi|190627529|gb|EDV43053.1| GF18290 [Drosophila ananassae] Length = 2252 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 96/257 (37%), Gaps = 49/257 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1996 FEEFEASLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2055 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 2056 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2115 Query: 112 ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151 DV ES+ A++LD + +V + Sbjct: 2116 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVYSNMMSPEIEQFS 2175 Query: 152 KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K+ ++E AKFG D R V V++ +G+ Sbjct: 2176 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2225 Query: 207 SKRAAEQVAAAEVLKRE 223 + R A+ AA L++ Sbjct: 2226 NYRIAKCTAAKCALRQL 2242 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 9/118 (7%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+L Sbjct: 1719 LVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKL 1776 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 S + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1777 SHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1831 >gi|327259080|ref|XP_003214366.1| PREDICTED: endoribonuclease Dicer-like isoform 2 [Anolis carolinensis] Length = 1915 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 102/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y+F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1659 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1718 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1719 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1778 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1779 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWHVYYPMMRPLIEKF 1838 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1839 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1891 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1892 IAKSAAARRALR 1903 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1288 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1345 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1346 VSNCNLYRLGKKKGLPSRMVVS 1367 >gi|327259078|ref|XP_003214365.1| PREDICTED: endoribonuclease Dicer-like isoform 1 [Anolis carolinensis] Length = 1918 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 102/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y+F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1662 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1721 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1722 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1781 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149 S + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1782 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWHVYYPMMRPLIEKF 1841 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1842 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1894 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1895 IAKSAAARRALR 1906 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1291 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1348 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1349 VSNCNLYRLGKKKGLPSRMVVS 1370 >gi|6715634|gb|AAF26461.1|AC007323_2 T25K16.4 [Arabidopsis thaliana] Length = 2024 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 63/264 (23%), Positives = 101/264 (38%), Gaps = 57/264 (21%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + ++ + LE+ + Y F + LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1642 LKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1701 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFM-------- 111 + S G L+ + V+ E ++VA + L ++R S L K V Sbjct: 1702 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQVNKIKKQSILFSK 1761 Query: 112 -----------------------------------------TSIQADVVESLIAALYLDG 130 + D+VES+ A++LD Sbjct: 1762 SFKCLTVWLLFVFQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDS 1821 Query: 131 GIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 G + + V + Q + ELQE + EYK RSG Sbjct: 1822 GKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQAEGL-EYKA-SRSGN----TA 1875 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQ 213 TV V I G+ + K+ A++ Sbjct: 1876 TVEVFIDGVQVGVAQNPQKKMAQK 1899 Score = 71.6 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 1433 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1489 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 1490 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1520 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214 L + K P Y+ GP H RFT V ++ + + S + A+ Sbjct: 1951 LNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDS 2010 Query: 215 AAAEVLK 221 AA +L+ Sbjct: 2011 AAVLLLE 2017 >gi|15150411|gb|AAK84929.1| SD01621p [Drosophila melanogaster] Length = 865 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 49/257 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 609 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 668 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 669 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISE 728 Query: 112 ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151 DV ES+ A++LD + +V + Sbjct: 729 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 788 Query: 152 KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K+ ++E AKFG D R V V++ +G+ Sbjct: 789 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 838 Query: 207 SKRAAEQVAAAEVLKRE 223 + R A+ AA L++ Sbjct: 839 NYRIAKCTAAKCALRQL 855 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 330 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 387 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 388 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 443 >gi|212723814|ref|NP_001131630.1| hypothetical protein LOC100192986 [Zea mays] gi|194692090|gb|ACF80129.1| unknown [Zea mays] Length = 365 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 95/242 (39%), Gaps = 28/242 (11%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62 + +LE + Y+F + SLL +ALTH S Y+RLEFLGD +L + + ++ Sbjct: 110 INVKSLELLLDYSFNDPSLLMEALTHGSYQIAGTTPCYQRLEFLGDAVLDHIFTDYFYHQ 169 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK--------------DVC 108 + L+ ++ V+ + A + L + SS Sbjct: 170 YPECTPELLTDLRSASVNNSCYAHAAVKAGLHKHVLHSSSALHKRMADYLDKFEQSFSGP 229 Query: 109 SFM-------TSIQADVVESLIAALYLDGGIEVAGTFV-DKYWKQRALKSGKFRRDAKTE 160 S + DVVES+ A+Y+D + + K + + + D E Sbjct: 230 SHGWEAGISLPKVLGDVVESIAGAIYIDAKHDKGVVWRSMKRILEPLVTPDTLQNDPVKE 289 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219 LQE+ +K EY VT +G V G A SK A+++AA+ V Sbjct: 290 LQEFCDSKGYTL-EYTVTRDNGVS---SVVAEVRTEGTTYKATRTGFSKLDAKKLAASSV 345 Query: 220 LK 221 L+ Sbjct: 346 LR 347 >gi|148829108|gb|ABR14013.1| Dicer-1 [Penaeus monodon] Length = 2473 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 66/255 (25%), Positives = 104/255 (40%), Gaps = 46/255 (18%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E++IGY F +RS L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 2217 YQVFEEKIGYTFRDRSYLLQAFTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 2276 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A + D + R S L + + F+ Sbjct: 2277 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINE 2336 Query: 112 ------------------TSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALK-S 150 DV ES+ A++LD G ++ + + + S Sbjct: 2337 EYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCREIEQFS 2396 Query: 151 GKFRRDAKTELQEWA--HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 G + EL E AKFG PE ++ D + V VEI G G+ + Sbjct: 2397 GVVPKSPIRELLEMEPETAKFGK-PE-RLV-------DGKVRVSVEIFGKGSFSGVGRNY 2447 Query: 209 RAAEQVAAAEVLKRE 223 R A+ AA L+ Sbjct: 2448 RIAKSTAAKRALRHL 2462 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 14/149 (9%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + + + S++ +ALT S+ + + ERLE +GD L I+T L+ + EG+ Sbjct: 1953 DLLNHPGPSPSVILQALTMSNANDGV--NLERLETIGDSFLKYAITTFLYCTYPQRHEGK 2010 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAAL 126 LS + VS ++ + L + + D F+ ++ E+LI Sbjct: 2011 LSYLRSKQVSNLNLYRLGKRKGLGECMVATKFEPHDNWLPPGYFVPR---ELEEALI--- 2064 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 D G+ + L S + RR Sbjct: 2065 --DSGVPAGHWNMADLPGLHDLASDEIRR 2091 >gi|149636857|ref|XP_001510982.1| PREDICTED: similar to Dicer protein [Ornithorhynchus anatinus] Length = 1921 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E++I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1665 FENFERKINYNFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1784 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E+ + K Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1897 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1898 IAKSAAARRALR 1909 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1352 VSNCNLYRLGKKKGLPSRMVVS 1373 >gi|283827860|gb|ADB44075.1| dicer-1 [Marsupenaeus japonicus] Length = 2482 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 66/255 (25%), Positives = 104/255 (40%), Gaps = 46/255 (18%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E++IGY F +RS L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 2226 YQVFEEKIGYTFQDRSYLLQAFTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 2285 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A + D + R S L + + F+ Sbjct: 2286 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINE 2345 Query: 112 ------------------TSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALK-S 150 DV ES+ A++LD G ++ + + + S Sbjct: 2346 EYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCREIEQFS 2405 Query: 151 GKFRRDAKTELQEWA--HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 G + EL E AKFG PE ++ D + V VEI G G+ + Sbjct: 2406 GVVPKSPIRELLEMEPETAKFGK-PE-RLV-------DGKVRVSVEIFGKGSFSGVGRNY 2456 Query: 209 RAAEQVAAAEVLKRE 223 R A+ AA L+ Sbjct: 2457 RIAKSTAAKRALRHL 2471 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 14/149 (9%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + + + S++ +ALT S+ + + ERLE +GD L I+T L+ + EG+ Sbjct: 1962 DLLNHPGPSPSVILQALTMSNANDGV--NLERLETIGDSFLKYAITTFLYCTYPQRHEGK 2019 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAAL 126 LS + VS ++ + L + + D F+ ++ E+LI Sbjct: 2020 LSYLRSKQVSNLNLYRLGKRKGLGECMVATKFEPHDNWLPPGYFVPR---ELEEALI--- 2073 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 D G+ + L S + RR Sbjct: 2074 --DSGVPAGHWNMADLPGLHDLASDEIRR 2100 >gi|268576156|ref|XP_002643058.1| C. briggsae CBR-DCR-1 protein [Caenorhabditis briggsae] Length = 1863 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 62/260 (23%), Positives = 104/260 (40%), Gaps = 50/260 (19%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 +++ LE++IGY F +R+ L +A TH+S ++ Y+RLEFLGD +L +I+ LF Sbjct: 1595 FQFAQLEEKIGYRFKDRAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFED 1654 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSFM---------- 111 G L+ ++LV+ + +A + + FI + L + F+ Sbjct: 1655 VRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCGDRSFDT 1714 Query: 112 -------------------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQ 145 DV ES+ A+YLD G + T+ V + + Sbjct: 1715 NFNTEMYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTWQVIYHLMK 1774 Query: 146 RALKS--GKFRRDAKTELQEW--AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 +++ R EL E A+F + SG + V V++ Sbjct: 1775 GTIETCCANPPRSPIRELMELEGTKARFSKM---ERILESG-----KVRVTVDVGNNMRF 1826 Query: 202 QGMDCSKRAAEQVAAAEVLK 221 GM + R A+ AA LK Sbjct: 1827 TGMGRNYRIAKATAAKRALK 1846 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL ALT S+ S S ER E +GD L + L++ EG+LS + VS Sbjct: 1350 LLLTALTTSNASDGM--SLERFETIGDSFLKFATTDYLYHTLQEQHEGKLSWARSKEVSN 1407 Query: 82 ETCSQVARELDLASFI 97 ++ ++L + I Sbjct: 1408 CNLYRLGKKLGIPQLI 1423 >gi|325954697|ref|YP_004238357.1| ribonuclease 3 [Weeksella virosa DSM 16922] gi|323437315|gb|ADX67779.1| Ribonuclease 3 [Weeksella virosa DSM 16922] Length = 256 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 102/224 (45%), Gaps = 16/224 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSA 66 + +G + + E+A TH S + ++ERLEFLGD +LG + L+N Sbjct: 29 QLVGVKPKDIRVYEEAFTHRSAQRKDDKGQNVNFERLEFLGDALLGASAAVHLYNSAPDR 88 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG L+ + +VS ++V+R+L L F+ +++L + D++E+ + A+ Sbjct: 89 QEGYLTKMRSKIVSRRQLNEVSRKLHLTEFLIPANNLANLG----EDVNGDLLEAFVGAI 144 Query: 127 YLDGGIEVAGTFVDKYWKQRAL----KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 Y+D G+ + F+ +Y + K + K+ + EW+ + Sbjct: 145 YVDQGLLITEKFITRYVIAPYITDLEKLEQRIASHKSLILEWSQKTKNSL-RFNTFEEQN 203 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 + F VV ++ ++G SK+ AE+ AA L+++ Sbjct: 204 AEDIQVFVSVVRLNEKVISKGRGTSKKKAEENAAKRAYYSLQKK 247 >gi|241061228|ref|XP_002408100.1| dicer-1, putative [Ixodes scapularis] gi|215492369|gb|EEC02010.1| dicer-1, putative [Ixodes scapularis] Length = 2050 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 95/256 (37%), Gaps = 48/256 (18%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E RIGY F +R+ L +A TH+S + + Y+RLEFLGD +L LI+ L++ Sbjct: 1794 YDAFEARIGYRFRDRAYLLQAFTHASYHYNRLTDCYQRLEFLGDAVLDYLITRHLYDDPQ 1853 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A + D + + VS L + F+ Sbjct: 1854 RHSPGTLTDLRSALVNNTFFASLAVKYDFHRYFKNVSPGLFAVIQRFVETKCHSDGFRYH 1913 Query: 112 ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151 D+ ES+ A++LD + + K Sbjct: 1914 EKYYLEEEECEEAEEVEVPKALGDIFESVAGAIFLDSNMSLDTVWRVYYAMMKPEIEYFS 1973 Query: 152 KFRRDAKTELQEWA----HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K+ ++E E + + + + VE+ G G+ + Sbjct: 1974 THV--PKSPIRELLELEPQTAKFERAEMTL--------NGKVRIRVEVFGKGRFVGVGRN 2023 Query: 208 KRAAEQVAAAEVLKRE 223 KR A+ AA L+ Sbjct: 2024 KRIAKCTAAKRALRAL 2039 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S+L +ALT S+ + + ERLE +GD L ++ L+ S EG+LS + + Sbjct: 1550 PSILLQALTMSNANDGI--NLERLETVGDSFLKYAVTAHLYCTHPSVHEGKLSHLRSRQI 1607 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVC 108 S ++ R L + + D Sbjct: 1608 SNLNLYRLGRARRLGGLMVATKFEPSDNW 1636 >gi|330723844|gb|AEC46214.1| Ribonuclease III [Mycoplasma hyorhinis MCLD] Length = 225 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 12/219 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTL 58 MS+++ L + N SL E+A TH S H + YE LEFLGD +L L S Sbjct: 1 MSSIK--ELLLNLNIVANNLSLYEQAFTHKSYHHVRPNKPHYEMLEFLGDSLLNLQTSLY 58 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 +F + D+ EG ++ + +VS+ + ++++ +L L+ +++V+ + T I+AD+ Sbjct: 59 IFKNIDAKNEGNATILRSQIVSSVSFAKISDKLQLSKYLKVAKGSEE--ILNNTKIKADI 116 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +ESL AA+YLD + FV K K S K +D K+E QE + + +Y Sbjct: 117 LESLTAAIYLDQDKKTFEDFVKKILHSLVKKQSKKVIKDPKSEFQEIIQSFSKSSIKYIT 176 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 D F + G S + AE AA Sbjct: 177 KKT-----DKFFESELIWDNKIYGHGKGNSIKEAELEAA 210 >gi|229025290|ref|ZP_04181710.1| Ribonuclease 3 [Bacillus cereus AH1272] gi|228736043|gb|EEL86618.1| Ribonuclease 3 [Bacillus cereus AH1272] Length = 163 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 1/145 (0%) Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL+ ++V + + A EL S + + ++ ADV E+ I A Sbjct: 1 MSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGA 60 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LYLD G+E F+ + + + D K++LQE EY++ GP Sbjct: 61 LYLDQGLETVWGFLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQEKGPA 120 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209 H+ F V ++ +A G SK+ Sbjct: 121 HNREFVSRVTLNNVALGLGSGKSKK 145 >gi|308485595|ref|XP_003104996.1| CRE-DCR-1 protein [Caenorhabditis remanei] gi|308257317|gb|EFP01270.1| CRE-DCR-1 protein [Caenorhabditis remanei] Length = 1941 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 63/257 (24%), Positives = 103/257 (40%), Gaps = 46/257 (17%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 +++ LE+RIGY F R+ L +A TH+S ++ Y+RLEFLGD +L +I+ LF Sbjct: 1673 QFANLEERIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDV 1732 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSFM----------- 111 G L+ ++LV+ + +A + + FI + L + F+ Sbjct: 1733 RQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCADRNFDTN 1792 Query: 112 ------------------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQR 146 DV ES+ A+YLD G + T+ V + + Sbjct: 1793 FNAEMYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTWQVLFHMMRS 1852 Query: 147 ALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + S R EL E +K + ++ SG + V V++ GM Sbjct: 1853 TIDSCCANPPRSPIRELMELEASKARFSKMERIL-ESG-----KVRVTVDVGNNMRFTGM 1906 Query: 205 DCSKRAAEQVAAAEVLK 221 + R A+ AA LK Sbjct: 1907 GRNYRIAKATAAKRALK 1923 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL ALT S+ + S ER E +GD L + L++ EG+LS + VS Sbjct: 1427 LLLTALTTSNAADGM--SLERFETIGDSFLKFATTDYLYHTLQDQHEGKLSFARSKEVSN 1484 Query: 82 ETCSQVARELDLASFI 97 ++ ++L + I Sbjct: 1485 CNLYRLGKKLGIPQLI 1500 >gi|71051733|gb|AAH98796.1| Dicer1 protein [Rattus norvegicus] Length = 401 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 100/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 145 FENFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 204 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 205 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 264 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ EV + K Sbjct: 265 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 324 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 325 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVELVGKGKFKGVGRSYR 377 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 378 IAKSAAARRALR 389 >gi|238814324|ref|NP_001154925.1| endoribonuclease Dicer [Danio rerio] gi|229485378|sp|Q6TV19|DICER_DANRE RecName: Full=Endoribonuclease Dicer Length = 1865 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 98/252 (38%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1609 FLNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1668 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1669 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1728 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E + K Sbjct: 1729 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1788 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1789 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1841 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1842 IAKSAAARRALR 1853 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1275 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1332 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1333 VSNCNLYRLGKKKGLPSRMVVS 1354 >gi|37266499|gb|AAQ90464.1| Dicer1 [Danio rerio] Length = 1243 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 98/252 (38%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 987 FLNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1046 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1047 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1106 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E + K Sbjct: 1107 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1166 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1167 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1219 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 1220 IAKSAAARRALR 1231 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 653 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 710 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 711 VSNCNLYRLGKKKGLPSRMVVS 732 >gi|242018047|ref|XP_002429494.1| dicer-1, putative [Pediculus humanus corporis] gi|212514432|gb|EEB16756.1| dicer-1, putative [Pediculus humanus corporis] Length = 2179 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 45/255 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ I Y F +RS L +ALTH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1914 FDIFEESIKYRFRDRSYLLQALTHASYYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 1973 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A D + R + L + V F+ Sbjct: 1974 HHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLCPSLNEVVDRFVRFQQANGHAISE 2033 Query: 112 ------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 DV ES+ A++LD G+ + + Y++ + F Sbjct: 2034 EFYLIEEEECEEAEDVEVPKALGDVFESVAGAIFLDSGMSLDAVW-RVYYRIMKNEIELF 2092 Query: 154 RRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSK 208 + K+ ++E F + PE T + G R V VE+ G G+ + Sbjct: 2093 STNVPKSPIREL----FELEPE---TAQFGKPEKLADGRRVRVSVEVFGKGIFNGIGRNY 2145 Query: 209 RAAEQVAAAEVLKRE 223 R A+ AA LK+ Sbjct: 2146 RIAKCTAAKCALKQL 2160 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 G+ + SL+ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS Sbjct: 1633 GHPGPSPSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCIYENVHEGKLSH 1690 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 + VS ++ R+ L + + D Sbjct: 1691 LRSKQVSNFNLYRLGRKKMLGESMVATKFEPHDNW 1725 >gi|166368821|ref|YP_001661094.1| ribonuclease III [Microcystis aeruginosa NIES-843] gi|166091194|dbj|BAG05902.1| ribonuclease III [Microcystis aeruginosa NIES-843] Length = 234 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 10/208 (4%) Query: 5 RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + TL +++G + LL+ ALTH SIS ++YE+LEF+GD ++ L + +L Sbjct: 11 QLKTLVEKLGLSADVPVKWDLLDLALTHPSISRD--KNYEQLEFVGDSVVRLAAAEVLLE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + A GE + + +VS T ++ A ++ VSS D ++ AD E+ Sbjct: 69 TYPEALVGEFAALRSMMVSDRTLAEFADRYGFERYLLVSSSTSIDQAGRISR-LADAFEA 127 Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ ALYL + + +++D+ +++A ++ R++ K LQEW A + P+Y V Sbjct: 128 VLGALYLSTQTMVLVRSWLDEPLREKAAEIRRDPARQNYKDALQEWTQATYKKLPQYLVK 187 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDC 206 + D + F V ++ G Sbjct: 188 EINSLDQER-FCAEVWLNDQKLGVGTGR 214 >gi|289711908|gb|ACC62400.2| ribonuclease III [Penaeus monodon] Length = 2473 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 66/255 (25%), Positives = 103/255 (40%), Gaps = 46/255 (18%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E++IGY F +RS L +A TH+S + Y+RLEFLGD +L LI+ L+ Sbjct: 2217 YQVFEEKIGYTFRDRSYLLQAFTHASYYKNRLTGCYQRLEFLGDAVLDYLITRHLYEDKR 2276 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A + D + R S L + + F+ Sbjct: 2277 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINE 2336 Query: 112 ------------------TSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALK-S 150 DV ES+ A++LD G ++ + + + S Sbjct: 2337 EYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCREIEQFS 2396 Query: 151 GKFRRDAKTELQEWA--HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 G + EL E AKFG PE ++ D + V VEI G G+ + Sbjct: 2397 GVVPKSPIRELLEMEPETAKFGK-PE-RLV-------DGKVRVSVEIFGKGSFSGVGRNY 2447 Query: 209 RAAEQVAAAEVLKRE 223 R A+ AA L+ Sbjct: 2448 RIAKSTAAKRALRHL 2462 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 14/149 (9%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + + + S++ +ALT S+ + + ERLE +GD L I+T L+ + EG+ Sbjct: 1953 DLLNHPGPSPSVILQALTMSNANDGV--NLERLETIGDSFLKYAITTFLYCTYPQRHEGK 2010 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAAL 126 LS + VS ++ + L + + D F+ ++ E+LI Sbjct: 2011 LSYLRSKQVSNLNLYRLGKRKGLGECMVATKFEPHDNWLPPGYFVPR---ELEEALI--- 2064 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 D G+ + L S + RR Sbjct: 2065 --DSGVPAGHWNMADLPGLHDLASDEIRR 2091 >gi|304373283|ref|YP_003856492.1| Ribonuclease III [Mycoplasma hyorhinis HUB-1] gi|304309474|gb|ADM21954.1| Ribonuclease III [Mycoplasma hyorhinis HUB-1] Length = 225 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 63/219 (28%), Positives = 104/219 (47%), Gaps = 12/219 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTL 58 MS+++ L + + SL E+A TH S H + YE LEFLGD +L L S Sbjct: 1 MSSIK--ELLLNLNIVANDLSLYEQAFTHKSYHHVRPNKPHYEMLEFLGDSLLNLQTSLY 58 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 +F + D+ EG ++ + +VS+ + ++++ +L L+ +++V+ + + T I+AD+ Sbjct: 59 IFKNIDAKNEGNATILRSQIVSSVSFAKISEKLQLSKYLKVAKGSEEIL--NNTKIKADI 116 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +ESL AA+YLD + FV K K S K +D K+E QE + + +Y Sbjct: 117 LESLTAAIYLDQDKKTFEDFVKKILHSLVKKQSKKVIKDPKSEFQEIIQSFSKSSIKYIT 176 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 D F + G S + AE AA Sbjct: 177 KKT-----DKFFESELIWDNKIYGHGKGNSIKEAELEAA 210 >gi|221126960|ref|XP_002167020.1| PREDICTED: similar to ribonuclease III, nuclear [Hydra magnipapillata] Length = 576 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 17/221 (7%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLIS 56 ++ ++ TLEK+IG F + SLL KALTHS + +YE+LEFLGD IL + S Sbjct: 350 LTLQKFVTLEKKIGVEFTHISLLVKALTHSVKGLDDETITRGNYEQLEFLGDAILKYICS 409 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ HF + +EG L++ SL++ + ++ + E+DL +I + + Sbjct: 410 DYLYKHFPNHQEGHLTLLRISLINLKCLAKASEEIDLIKYIVFHPNHEPST--TNEKTFS 467 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWAHAKFGVT- 172 DV E+ +AAL+LD G+ ++ R LK +D K++LQ+ + + T Sbjct: 468 DVFEAFLAALHLDKGLLHCQKLIEVCILSR-LKEFILSQDWLEPKSQLQQCCNTYYNKTK 526 Query: 173 ------PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 P YK S + F V V +G G S Sbjct: 527 PDKVEHPVYKRIKLSTINGVQNFKVGVYFNGKRLGTGQGRS 567 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 17/132 (12%) Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 S LF F G+LS+ + LV E +A +L+L F+ V R V + Sbjct: 229 SSMHLFLMFPEKGPGKLSIFRSGLVQGEHLRTIANKLNLVDFLLVKH--RSQVLQNLGYF 286 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA-KTELQEWAHAKFGVTP 173 + VE++I A+YLD G+E A + + + + K LQ Sbjct: 287 LGNAVEAVIGAVYLDAGLEKADSLITNLYFNDDEELSTIWNKYKKDPLQ----------I 336 Query: 174 EYKVTFRSGPDH 185 EY SG H Sbjct: 337 EY----ESGDRH 344 >gi|123969345|ref|YP_001010203.1| putative ribonuclease III [Prochlorococcus marinus str. AS9601] gi|123199455|gb|ABM71096.1| putative ribonuclease III [Prochlorococcus marinus str. AS9601] Length = 249 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 7/204 (3%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +A HSS +YE+LEF GD +L L S + + GE S +VS E Sbjct: 42 FNQAFIHSS--EDKIINYEKLEFFGDAVLRLAASNFIEKKYPQMSVGERSELRAQIVSDE 99 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141 +++ ++D+ I D S T I + E+LI A+Y I+ ++D Sbjct: 100 WLTKLGEKIDIEKLIIKGPKAIGDENSKNT-IICEATEALIGAIYKCFSSIKEVNLWLDD 158 Query: 142 YWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGL 198 W++ ++ +KT LQEW +K P YK+ S + DP RF + I GL Sbjct: 159 IWEEDSEIFLKSPYKFKSKTVLQEWCQSKGFDLPVYKIIEVSKKNGDPERFYCNIFIEGL 218 Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222 + S + AE AA ++++ Sbjct: 219 KESSAFGKSHKQAETNAARVLIEK 242 >gi|145358264|ref|NP_197532.3| DCL4 (DICER-LIKE 4); RNA binding / protein binding / ribonuclease III [Arabidopsis thaliana] gi|322510021|sp|P84634|DCL4_ARATH RecName: Full=Dicer-like protein 4 gi|73672051|gb|AAZ80387.1| dicer-like 4 [Arabidopsis thaliana] gi|332005447|gb|AED92830.1| dicer-like protein 4 [Arabidopsis thaliana] Length = 1702 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 88/242 (36%), Gaps = 29/242 (11%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 TLE ++ Y F ++ LL +A H S + Y+RLEFLGD +L L+++ F F Sbjct: 1291 NLETLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFP 1350 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK------------------- 105 K G+L+ + V+ E + VA L F+ S Sbjct: 1351 KLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQ 1410 Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEW 164 + D+VES + AL+LD G + + + + EL E Sbjct: 1411 SEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIEL 1470 Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMDCSKRAAEQVAAAEVLK 221 + + + D FTV ++++ +KR + AA ++ Sbjct: 1471 CQSYKWD----REISATKKDGA--FTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMIT 1524 Query: 222 RE 223 Sbjct: 1525 NL 1526 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 59/158 (37%), Gaps = 44/158 (27%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALT + + S ERLE LGD L +S LF H DS EGEL+ R +++V+ Sbjct: 1105 EALT--TEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNL 1162 Query: 85 SQVARELDLASFIR----------------------------------VSSDLRKDV--- 107 ++A + +L +IR + Sbjct: 1163 CRLAIKKNLQVYIRDQALDPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTGEIR 1222 Query: 108 ---CSFM--TSIQADVVESLIAALYLDGGIEVAGTFVD 140 ADVVE+L+ A +D G + A F+ Sbjct: 1223 CSKGHHWLYKKTIADVVEALVGAFLVDSGFKGAVKFLK 1260 Score = 39.3 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 140 DKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 D+ ++ +K+G + AK+ L E A P ++ GP H F V + Sbjct: 1604 DRLPQKAIIKAGGPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILE 1661 >gi|332005448|gb|AED92831.1| dicer-like protein 4 [Arabidopsis thaliana] Length = 1688 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 88/242 (36%), Gaps = 29/242 (11%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 TLE ++ Y F ++ LL +A H S + Y+RLEFLGD +L L+++ F F Sbjct: 1277 NLETLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFP 1336 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK------------------- 105 K G+L+ + V+ E + VA L F+ S Sbjct: 1337 KLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQ 1396 Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEW 164 + D+VES + AL+LD G + + + + EL E Sbjct: 1397 SEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIEL 1456 Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMDCSKRAAEQVAAAEVLK 221 + + + D FTV ++++ +KR + AA ++ Sbjct: 1457 CQSYKWD----REISATKKDGA--FTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMIT 1510 Query: 222 RE 223 Sbjct: 1511 NL 1512 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 59/158 (37%), Gaps = 44/158 (27%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALT + + S ERLE LGD L +S LF H DS EGEL+ R +++V+ Sbjct: 1091 EALT--TEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNL 1148 Query: 85 SQVARELDLASFIR----------------------------------VSSDLRKDV--- 107 ++A + +L +IR + Sbjct: 1149 CRLAIKKNLQVYIRDQALDPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTGEIR 1208 Query: 108 ---CSFM--TSIQADVVESLIAALYLDGGIEVAGTFVD 140 ADVVE+L+ A +D G + A F+ Sbjct: 1209 CSKGHHWLYKKTIADVVEALVGAFLVDSGFKGAVKFLK 1246 Score = 39.3 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 140 DKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 D+ ++ +K+G + AK+ L E A P ++ GP H F V + Sbjct: 1590 DRLPQKAIIKAGGPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILE 1647 >gi|100271832|gb|ABF69320.1| ribonuclease III [Ehrlichia ruminantium] Length = 137 Score = 157 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 49/131 (37%), Positives = 73/131 (55%) Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 +L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK A Sbjct: 1 NLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I+ +K+ A Sbjct: 61 VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVGINSHETLHATGQNKKLA 120 Query: 212 EQVAAAEVLKR 222 EQ AA+ +L + Sbjct: 121 EQKAASLMLAK 131 >gi|47459246|ref|YP_016108.1| ribonuclease III [Mycoplasma mobile 163K] gi|81614213|sp|Q6KHN3|RNC_MYCMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|47458575|gb|AAT27897.1| ribonuclease III [Mycoplasma mobile 163K] Length = 246 Score = 157 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 105/228 (46%), Gaps = 9/228 (3%) Query: 1 MSAL-RYSTLEKRI---GYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLL 54 M+ + LE + F + +ALTH + ++ + ESY+ LEF+GD IL + Sbjct: 1 MNKKTKIEGLENFLTLNNIIFKDIKYYIQALTHKTYANEHANIESYDILEFIGDAILQMK 60 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 S +F HF + EGE S+ V + S+++++L L+ + +S I Sbjct: 61 SSIFIFQHFQNITEGEASLIRAKNVCSSGLSELSKKLGLSKLLLISKGSEH--LRENVKI 118 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTP 173 AD+ ES +AA+YLD G E F+ + + + + +D K+ QE+ + Sbjct: 119 NADLFESFVAAIYLDLGDEKLEEFLKEIFYPYISTTNLESIKDPKSSFQEYIQSYSNEII 178 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 EYK+T F + +G+ G +K+ AE+ AA L+ Sbjct: 179 EYKITQLENELRSELFKAELMHNGITYGVGFGKTKKVAEEEAATRALE 226 >gi|326334475|ref|ZP_08200686.1| ribonuclease 3 [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693244|gb|EGD35172.1| ribonuclease 3 [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 255 Score = 157 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 16/225 (7%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALT---HSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + + +EK +G+ E+A T + S + SYERLEFLGD ILG +I+ +F Sbjct: 17 IFFIEMEKLLGFPPKEIRYYEEAFTLGSNRSQDLGHPISYERLEFLGDAILGAVIAHFVF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG+L+ +V + +Q+ EL L +++ +I +++E Sbjct: 77 LQAPNKDEGDLTKMRTRMVRRDNLNQIGEELQLREYLQTERKSLLLSG----NISGNLLE 132 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKV 177 +L+ A+YLD G + A F+ + L K+ + EWA K+ T + Sbjct: 133 ALVGAIYLDRGYQKATEFIHRILIDANLSMKDLENKVISYKSLMVEWAQ-KYHKTIAF-- 189 Query: 178 TFRSGPDHD---PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 P + F V I+ + D SK+ AE+ AA Sbjct: 190 IAEEDPTYKGKIKYFQARVMINDKVYTKAHDTSKKKAEERAAKRA 234 >gi|260654634|ref|ZP_05860124.1| ribonuclease III [Jonquetella anthropi E3_33 E1] gi|260630650|gb|EEX48844.1| ribonuclease III [Jonquetella anthropi E3_33 E1] Length = 239 Score = 157 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 12/220 (5%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFN 61 A S +KR G F + +LL+ ALTH S + +RLEFLGD ++ +S LF Sbjct: 12 AQDLSAFQKRSGLVFRDPALLDLALTHRSFAAERGGGDNQRLEFLGDALIEGAVSAELFC 71 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG+L+ R LV ++ ++ A +L L +R + +++AD E+ Sbjct: 72 SRTNDDEGKLTRRRARLVCQKSLARCADKLGLGELLRRGRGQTEAT----EAMKADAFEA 127 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 L AALYLDGG E VD + DAKT L +W + VT ++ T R+ Sbjct: 128 LAAALYLDGGAEAMRGLVDLILSEPL-----APLDAKTLLCQWGAS-CRVTVTFEETGRT 181 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDH+P F V V+ +G A G S+ AAEQ AA +V++ Sbjct: 182 GPDHEPHFFVRVQ-AGSETACGEGPSRLAAEQDAAGKVIR 220 >gi|282855648|ref|ZP_06264959.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Pyramidobacter piscolens W5455] gi|282586496|gb|EFB91753.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Pyramidobacter piscolens W5455] Length = 253 Score = 157 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 11/222 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 R +L+KR GY F + LL A T S + + ERLEFLGD L LL+ L+ Sbjct: 13 RADSLQKRTGYQFRDPELLRLAFTQRSGAGGPNPSMNNERLEFLGDAALSLLVGEALYRE 72 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + A EG +++ + LV S E +RV + ++ D VE+ Sbjct: 73 YPEADEGFMTIERSKLVCGRNLSAWGYEAGFDQMLRVCDGVEVS-----DAMVEDSVEAA 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +LDGG++ + + +G D++ L+ + P Y R Sbjct: 128 AGAFFLDGGLDAVRALLQSFSDYPDQGAG---FDSRRHLERDCSYEKLGAPRYDTMRRR- 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + F V + G+ + AE+ AA + + R G Sbjct: 184 ANGKIIFESSVSLDKEPSGTGIGADRTEAERNAARDAMCRLG 225 >gi|126697134|ref|YP_001092020.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9301] gi|126544177|gb|ABO18419.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9301] Length = 249 Score = 157 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 7/204 (3%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +A HSS +YE+LEF GD +L L S + + GE S +VS E Sbjct: 42 FNQAFIHSS--EDKIINYEKLEFFGDAVLRLAASNFIEKKYPQLSVGERSELRAQIVSDE 99 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141 +++ R++++ I D S T I + E+LI A+Y I+ ++D Sbjct: 100 WLTKLGRKIEIDKLIIKGPKALGDENSKNT-IIGEATEALIGAVYKCFNSIQEINLWLDN 158 Query: 142 YWKQRALKSGKFRRDAKTE--LQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGL 198 W++ + + K K++ LQEW +K P YK+ S + D RF+ + I GL Sbjct: 159 IWEEDSEQFLKAPYKYKSKTVLQEWCQSKGFDLPVYKIMEVSKKNGDLKRFSCDIFIEGL 218 Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222 + S + AE AA ++++ Sbjct: 219 KESSAFGKSHKQAETNAARVLIEK 242 >gi|298491860|ref|YP_003722037.1| ribonuclease III ['Nostoc azollae' 0708] gi|298233778|gb|ADI64914.1| ribonuclease III ['Nostoc azollae' 0708] Length = 237 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 61/213 (28%), Positives = 110/213 (51%), Gaps = 12/213 (5%) Query: 5 RYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +++G + + LL+ ALTH+++S S +YE+LEF+GD ++ L+ + +L+ Sbjct: 11 QLENLVQKLGLSPDSPIKWPLLDLALTHATVSESA--NYEQLEFVGDAVVRLVAAVVLWE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H+ G+ + + LVS SQ+ARE L ++ V+ D S AD E+ Sbjct: 69 HYPYCSVGDFAAIRSVLVSDRILSQLAREYGLELYLLVAGSATADHVGQ-ESRLADAFEA 127 Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ ALYL +E+ ++D ++++ + ++ R + K LQEW A+F + PEY+V Sbjct: 128 VLGALYLSTHNLELIRPWLDPHFQELTKEIRLDPARLNYKAALQEWTQAQFKILPEYRVM 187 Query: 179 FRSGPD--HDPRFTVVVEISGLAPAQGMDCSKR 209 + P H+ F V + QG S + Sbjct: 188 EVNQPHRTHER-FMAEVWLHKKMLGQGKGRSIK 219 >gi|225430894|ref|XP_002269915.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1380 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 98/242 (40%), Gaps = 29/242 (11%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62 + S LE + Y+F + SLL +ALTH S Y+RLEFLGD +L L++ L++ Sbjct: 1133 VNVSYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHK 1192 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK-----DVCSF------- 110 + G L+ ++ V+ + +Q A + L I SS V +F Sbjct: 1193 YPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVES 1252 Query: 111 ---------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159 + DV+ESL A+ +D EV + + + + Sbjct: 1253 TFGWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEP-LITPETVKLHPAR 1311 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 EL E + + V ++G T+ VE +G KR A ++A+ EV Sbjct: 1312 ELGELCQKEHY-DIKRVVVSQNGKA---SVTIEVEANGAKHKHTSTSDKRTATKLASKEV 1367 Query: 220 LK 221 LK Sbjct: 1368 LK 1369 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 29/131 (22%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98 E LE LGD L S LF F + EG LSV+ ++S + ++ + L FIR Sbjct: 981 ESLETLGDSFLKYAASQQLFKTFQNHHEGLLSVKKERIISNASLCKLGCDRKLPGFIRNE 1040 Query: 99 ----------------------VSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGI 132 + S RK S ++ ADVVE+LI A +L G Sbjct: 1041 SFDPKKWIIAGDQSRSHVFGEELLSSTRKIYVSERRKLKSKRIADVVEALIGA-FLSTGG 1099 Query: 133 EVAGTFVDKYW 143 E A ++ Sbjct: 1100 ETAALIFMRWL 1110 >gi|255733032|ref|XP_002551439.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240131180|gb|EER30741.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 623 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 24/227 (10%) Query: 16 AFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNHFDSA 66 + L E+ TH S ++ ERLEFLGD IL L++ ++F F++ Sbjct: 249 KINDNKLFERVFTHKSFVNNKNYLNNSELLKLHNERLEFLGDSILNNLVTLIIFKEFNNC 308 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR--VSSDLRKDVCSFMTSIQADVVESLIA 124 EGELS SL+ +T + A E + ++ ++ + K I ADV E+ I Sbjct: 309 NEGELSKIRASLICNKTLLKFAYEYGFDTRLKSFINKEAIKSGDQ---KIYADVFEAYIG 365 Query: 125 ALYLDGG--IEVAGTFVDKYWKQ------RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 AL ++ G ++ ++ K ++ + L +AK+EL + + P+YK Sbjct: 366 ALGIERGNDLKEVQDWLIKLFEPLIFELKKDLNKEPLDNNAKSELYSLI-GRTDMHPQYK 424 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V G + +F V ++G +G++ S + A AA E LK + Sbjct: 425 VI-EEGDGVEKKFIVSCMMNGEEIGKGVEKSIKDAGIRAAMEALKNK 470 >gi|297735235|emb|CBI17597.3| unnamed protein product [Vitis vinifera] Length = 1340 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 98/242 (40%), Gaps = 29/242 (11%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62 + S LE + Y+F + SLL +ALTH S Y+RLEFLGD +L L++ L++ Sbjct: 1093 VNVSYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHK 1152 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK-----DVCSF------- 110 + G L+ ++ V+ + +Q A + L I SS V +F Sbjct: 1153 YPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVES 1212 Query: 111 ---------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159 + DV+ESL A+ +D EV + + + + Sbjct: 1213 TFGWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEP-LITPETVKLHPAR 1271 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 EL E + + V ++G T+ VE +G KR A ++A+ EV Sbjct: 1272 ELGELCQKEHY-DIKRVVVSQNGKA---SVTIEVEANGAKHKHTSTSDKRTATKLASKEV 1327 Query: 220 LK 221 LK Sbjct: 1328 LK 1329 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 29/131 (22%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98 E LE LGD L S LF F + EG LSV+ ++S + ++ + L FIR Sbjct: 941 ESLETLGDSFLKYAASQQLFKTFQNHHEGLLSVKKERIISNASLCKLGCDRKLPGFIRNE 1000 Query: 99 ----------------------VSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGI 132 + S RK S ++ ADVVE+LI A +L G Sbjct: 1001 SFDPKKWIIAGDQSRSHVFGEELLSSTRKIYVSERRKLKSKRIADVVEALIGA-FLSTGG 1059 Query: 133 EVAGTFVDKYW 143 E A ++ Sbjct: 1060 ETAALIFMRWL 1070 >gi|254526942|ref|ZP_05138994.1| ribonuclease III [Prochlorococcus marinus str. MIT 9202] gi|221538366|gb|EEE40819.1| ribonuclease III [Prochlorococcus marinus str. MIT 9202] Length = 249 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 7/205 (3%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +A HSS +YE+LEF GD +L L S + + GE S +VS E Sbjct: 42 FNQAFIHSS--EDKIINYEKLEFFGDAVLRLAASNFIEKKYPHMSVGERSELRAQIVSDE 99 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141 +++ E+D+ I D S T I + E+LI A+Y I+ ++D Sbjct: 100 WLTKLGGEIDIEKLIIKGPKALGDENSKNT-IIGESTEALIGAVYKCFNSIQEVNLWLDD 158 Query: 142 YWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGL 198 W++ ++ +KT LQEW +K P YK+ S + D RF+ + I GL Sbjct: 159 IWEKDSEIFLKAPYKFKSKTVLQEWCQSKGFDLPVYKIIEFSKKNGDPKRFSCDIYIEGL 218 Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223 + S + AE AA ++++ Sbjct: 219 KESSAFGKSHKQAETNAARVLIEKL 243 >gi|157414210|ref|YP_001485076.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9215] gi|157388785|gb|ABV51490.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9215] Length = 249 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 7/205 (3%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +A HSS +YE+LEF GD +L L S + + GE S +VS E Sbjct: 42 FNQAFIHSS--EDKIINYEKLEFFGDAVLRLAASNFIEKKYPQMSVGERSELRAQIVSDE 99 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141 +++ ++D+ I D S T I + E+LI A+Y I+ ++D Sbjct: 100 WLTKLGEKIDIEKLIIKGPKALGDENSKNT-IIGEATEALIGAVYKCFNSIQEVNLWLDD 158 Query: 142 YWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGL 198 W++ ++ +KT LQEW +K P YK+ S + D RF+ + I GL Sbjct: 159 IWEKDSEIFLKAPYKFKSKTVLQEWCQSKGFDLPIYKIIEFSKKNGDPKRFSCDIHIEGL 218 Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223 + S + AE AA ++++ Sbjct: 219 KESSAFGKSHKQAETNAARVLIEKL 243 >gi|312069719|ref|XP_003137813.1| hypothetical protein LOAG_02227 [Loa loa] gi|307767024|gb|EFO26258.1| hypothetical protein LOAG_02227 [Loa loa] Length = 1928 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 100/259 (38%), Gaps = 47/259 (18%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++S LE IGY F +R+ L +A TH+S + Y+RLEFLGD +L +I+ LF H Sbjct: 1660 FQFSKLEDFIGYRFNDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQH 1719 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-----RVSSDLRKDVC--------- 108 G L+ ++LV+ + +A + + R+ + K VC Sbjct: 1720 SSHYSPGVLTDLRSALVNNTIFASLAIKHNFHKHFIAMCPRLHHMIEKFVCLCTEKNLSS 1779 Query: 109 -----------------------SFMTSIQADVVESLIAALYLDGG--IEVAGTFVDKYW 143 + D+ ES+ A+YLD G +++ Sbjct: 1780 ANFNEEMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLDIVWRVFYNLM 1839 Query: 144 KQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K+ + R EL E + + ++ +G + V V+I G Sbjct: 1840 KETIDECCSNPPRSPIRELLEMEPERARFSKLERIL-ETG-----KVRVTVDIQGKCRFT 1893 Query: 203 GMDCSKRAAEQVAAAEVLK 221 GM S R A+ AA L+ Sbjct: 1894 GMGRSYRIAKCTAAKRALR 1912 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +ALT S+ S + ERLE +GD L ++ LF+ EG+LS + VS Sbjct: 1412 LLQALTLSNASDGI--NLERLETVGDSFLKYAVTDYLFHTNPEQHEGKLSFARSKEVSNC 1469 Query: 83 TCSQVARELDLASFIRVSSDLRKDVC 108 ++ R+ +L S I S D Sbjct: 1470 NLYRLGRKHNLPSLIIGSKFDPNDGW 1495 >gi|148907962|gb|ABR17101.1| unknown [Picea sitchensis] Length = 685 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 58/248 (23%), Positives = 102/248 (41%), Gaps = 32/248 (12%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+ +GY F+ + LL +A H S + Y+RLEFLGD +L +I++ L++ + Sbjct: 220 IDIDELERLLGYNFSYKGLLLEAFAHPSFNEHNGGCYQRLEFLGDAVLDYIITSYLYSVY 279 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----VSSDLRKDVCSFM------- 111 K G L+ + V+ E+ + VA L ++ +SS + K V Sbjct: 280 PDMKPGYLTDMRSMTVNNESFACVAVRHGLYMYLIQKSDSLSSAVTKYVDFMKALFTADR 339 Query: 112 ----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160 + D+VES AL +D G ++ + + Q + E Sbjct: 340 DSCDEPEPKCPKVLGDIVESFAGALVIDTGFDLDCVWKLMLNILQPIVTPETLCLQPVRE 399 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-----AQGMDCSKRAAEQVA 215 L E +T +Y V G + + V ++SG G S + A++VA Sbjct: 400 LSEVCQ-HHNLTLDY-VKASKGNGNG--YLVEAKVSGKKVSGSVGGTGTRTSIKDAKKVA 455 Query: 216 AAEVLKRE 223 + + L + Sbjct: 456 SKDALLKL 463 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 42/142 (29%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98 ERLE LGD L +S LF +D EG+L+ + ++ + + A+ ++IR Sbjct: 49 ERLEVLGDAFLKYAVSRRLFLVYDKLDEGQLTKKRSNAIKNSNLYKRAKGKGFPAYIRDE 108 Query: 99 ---------VSS-------DLRKDVCSFMT------------------------SIQADV 118 + + + ADV Sbjct: 109 YFDPKQYFALGRPCKNVCTPELVHMIHYFEGDNTMTDTDFTSVKCTKRHHWLHMKTIADV 168 Query: 119 VESLIAALYLDGGIEVAGTFVD 140 VE+LI A +D G A F+ Sbjct: 169 VEALIGAYLVDSGFGAALAFLK 190 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPAQGMD- 205 +F AK+ L E+ K P + G H FT V+ + G + + Sbjct: 600 DIDQFLGSAKSSLNEFCQKKSWEVPSWVCYQEEGMPHQKSFTYMAVLRLPGNISIECLGE 659 Query: 206 --CSKRAAEQVAAAEVL 220 +KR A + A+ L Sbjct: 660 PMKNKRLAMESASRGAL 676 >gi|313206470|ref|YP_004045647.1| rnase iii [Riemerella anatipestifer DSM 15868] gi|312445786|gb|ADQ82141.1| RNAse III [Riemerella anatipestifer DSM 15868] gi|315023589|gb|EFT36593.1| Ribonuclease III [Riemerella anatipestifer RA-YM] gi|325336084|gb|ADZ12358.1| dsRNA-specific ribonuclease [Riemerella anatipestifer RA-GD] Length = 247 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 11/213 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK +G S ++A + S S +Y+RLEFLGD +LG ++S L+ + E Sbjct: 30 LEKILGIQPKEVSWYQEAFSLKSTSSQL--NYDRLEFLGDAVLGSIVSYYLYRQYPQESE 87 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V+ + +Q+ +L+L S + K+ F+ + +++E+L+ A+Y+ Sbjct: 88 GFLTQMKSKIVNRKNLNQIGEKLNLTSLVL------KNGSKFVADLSGNLLEALVGAIYM 141 Query: 129 DGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G E V LK K+ L EW+ + +YK P Sbjct: 142 DFGYEKCQKVVLSKILTHSEMLKLENKIISYKSLLLEWSQKN-KIKIDYKTEEEFLPSKV 200 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 F + + G A + SK+ +E+ AA Sbjct: 201 KMFKTYIFVGGSKVASATETSKKKSEEKAAQRA 233 >gi|147833654|emb|CAN77284.1| hypothetical protein VITISV_043738 [Vitis vinifera] Length = 1296 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 96/242 (39%), Gaps = 29/242 (11%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62 + S LE + Y+F + SLL ++LTH S Y+RLEFLGD +L L++ L++ Sbjct: 1049 VNVSYLESILNYSFRDPSLLVESLTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHK 1108 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-------------- 108 + G L+ ++ V+ + +Q A + L I SS Sbjct: 1109 YPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGBFDKLPXES 1168 Query: 109 -------SFMTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159 S + DV+ESL A+ +D EV + + + + Sbjct: 1169 TFGWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEP-LITPETVKLHPAR 1227 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 EL E + + V ++G T+ VE +G KR A ++A+ EV Sbjct: 1228 ELXELCQKEHY-XIKRVVVSQNGKA---SVTIEVEANGAKHKHTSTSDKRTAXKLASKEV 1283 Query: 220 LK 221 LK Sbjct: 1284 LK 1285 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 29/131 (22%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98 E LE LGD L S LF F + EG LSV+ ++S + ++ + L FIR Sbjct: 897 ESLETLGDSFLKYAASQQLFKTFQNHHEGLLSVKKERIISNASLCKLGCDRKLPGFIRNE 956 Query: 99 ----------------------VSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGI 132 + S RK S ++ ADVVE+LI A +L G Sbjct: 957 SFDPKKWIIAGDQSRSHVFGEELLSSTRKIYVSERRKLKSKRIADVVEALIGA-FLSTGG 1015 Query: 133 EVAGTFVDKYW 143 E A ++ Sbjct: 1016 ETAALIFMRWL 1026 >gi|300775975|ref|ZP_07085834.1| ribonuclease III [Chryseobacterium gleum ATCC 35910] gi|300505108|gb|EFK36247.1| ribonuclease III [Chryseobacterium gleum ATCC 35910] Length = 254 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 11/226 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L+K +G N +L +A + + S + +YERLEFLGD +LG +IS LF + A Sbjct: 28 TELKKVLGTEVQNIALYREAFSLKNSSKNQDSNYERLEFLGDSVLGTIISCHLFQTYPQA 87 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ + +V+ + +++ +L L + ++ + + +I ++ E+LI A+ Sbjct: 88 NEGYLTQMKSKIVNRKNLNKLGEDLKLTNLLQ----KQNSSSALGENISGNLFEALIGAV 143 Query: 127 YLDGGIEVAGTFV-DKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD + + +K + K K L EW+ K V +Y+ + Sbjct: 144 YLDFHYDACKRIILEKLLTPSEINKLENKIVSYKGLLLEWSQKK-KVNIKYETCEEIQAN 202 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL----KREGIW 226 F V + A + SK+ AE+ AA K+E I Sbjct: 203 KSVVFRCHVWLGEEKIANATETSKKKAEEKAAQRAFYILNKKENIL 248 >gi|170591572|ref|XP_001900544.1| Type III restriction enzyme, res subunit family protein [Brugia malayi] gi|158592156|gb|EDP30758.1| Type III restriction enzyme, res subunit family protein [Brugia malayi] Length = 1856 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 98/259 (37%), Gaps = 47/259 (18%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++S LE IGY F +R+ L +A TH+S + Y+RLEFLGD +L +I+ LF H Sbjct: 1588 FQFSKLEDCIGYRFHDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQH 1647 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-----RVSSDLRKDVC--------- 108 G L+ ++LV+ + +A + + R+ + K VC Sbjct: 1648 SAHYSPGVLTDLRSALVNNTIFASLAVKYNFHKHFIAMCPRLHHMIEKFVCLCAEKNLSS 1707 Query: 109 -----------------------SFMTSIQADVVESLIAALYLDGG--IEVAGTFVDKYW 143 + D+ ES+ A+YLD G + Sbjct: 1708 ANFNEEMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLNTVWRVFYNLM 1767 Query: 144 KQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K+ + R EL E + + ++ +G + V V+I G Sbjct: 1768 KETINECCSNPPRSPIRELLEMEPERARFSKLERIL-ETG-----KVRVTVDIQGKCRFT 1821 Query: 203 GMDCSKRAAEQVAAAEVLK 221 GM S R A+ AA L+ Sbjct: 1822 GMGRSYRIAKCTAAKRALR 1840 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +ALT S+ S + ERLE +GD L ++ LF+ EG+LS + VS Sbjct: 1340 LLQALTLSNASDGI--NLERLETVGDSFLKYAVTDYLFHTNPEQHEGKLSFARSKEVSNC 1397 Query: 83 TCSQVARELDLASFIRVSSDLRKDVC 108 ++ R+ +L S I S D Sbjct: 1398 NLYRLGRKHNLPSLIIGSKFDPNDGW 1423 >gi|255536416|ref|YP_003096787.1| Ribonuclease III [Flavobacteriaceae bacterium 3519-10] gi|255342612|gb|ACU08725.1| Ribonuclease III [Flavobacteriaceae bacterium 3519-10] Length = 254 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 9/216 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDS 65 + + K G + N +L +A + + S Q ++YERLEFLGD +LG +IS LF+ + Sbjct: 27 NEISKITGCSVQNINLYREAFSLKTASPRTQVKNYERLEFLGDSVLGAIISCHLFSTYPH 86 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EG L+ + +V+ + +++ EL L F++ + S TS +++E+LI A Sbjct: 87 ANEGYLTQMKSKIVNRKNLNKLGDELGLTGFLQ---NESPSTLSENTS--GNLLEALIGA 141 Query: 126 LYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 LYLD E V + K K+ L EW+ K Y Sbjct: 142 LYLDVDYETCKKVVLERLLTPSEINKLENKIVSYKSLLLEWSQKK-KEHIRYDTEQEMQA 200 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + F V+ I+ A + SK+ AE+ AA Sbjct: 201 GKNVVFRSVIWINDRKVANATETSKKKAEEKAAQRA 236 >gi|47210543|emb|CAF93935.1| unnamed protein product [Tetraodon nigroviridis] Length = 479 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E++I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 223 FENFERKISYTFQNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 282 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 283 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGM 342 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E + K Sbjct: 343 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 402 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 403 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 455 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 456 IAKSAAARRALR 467 >gi|168177333|pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 15 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLITKHLYEDPR 74 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 75 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 134 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ EV + K Sbjct: 135 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 194 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 195 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 247 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 248 IAKSAAARRALR 259 >gi|307150902|ref|YP_003886286.1| ribonuclease III [Cyanothece sp. PCC 7822] gi|306981130|gb|ADN13011.1| ribonuclease III [Cyanothece sp. PCC 7822] Length = 235 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 55/210 (26%), Positives = 101/210 (48%), Gaps = 10/210 (4%) Query: 5 RYSTLEKRIGYAFA---NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 TL +++G N SLL+ AL H S S +Y++LEF+GD ++ L + +L Sbjct: 11 ELKTLVQKLGLPDTAAVNWSLLDLALIHPSFSREV--NYQQLEFVGDAVVRLAAAEVLLE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + A GE + + +VS T ++ A L ++ ++S+ + S AD E+ Sbjct: 69 TYPDALVGEFAALRSMMVSDRTLAEFADVYGLERYL-LTSERSSTDEAGRVSRLADGFEA 127 Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 L+ ALYL +++ ++D+ + +A ++ R + K LQEW A + + PEY+V Sbjct: 128 LLGALYLSTHNMKLIRPWLDELLQNKAAEIRLDPARLNYKDALQEWTQAHYKLLPEYRVQ 187 Query: 179 FRSGPDH-DPRFTVVVEISGLAPAQGMDCS 207 ++ + RF V ++ G + Sbjct: 188 EVLLNNNKEERFLAEVWLNDQKLGAGTGRT 217 >gi|15828634|ref|NP_325994.1| ribonuclease III (RNase III) [Mycoplasma pulmonis UAB CTIP] gi|14089576|emb|CAC13336.1| RIBONUCLEASE III (RNASE III) [Mycoplasma pulmonis] Length = 241 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 9/212 (4%) Query: 18 ANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH--FDSAKEGELSVR 74 +++ +A TH++ + Y+ +SYE LEFLGD IL +S +F + + G ++ Sbjct: 35 KEKNIFFQAFTHTTFHNLYKAKSYEMLEFLGDAILQKNVSEYIFKNTESNKINPGTATLI 94 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 + LV+ S +A+EL L F+ + + V + +D+ ESL AA+Y+ G +V Sbjct: 95 RSKLVNKTCLSNLAKELKLDKFLLLPKGQEELV--KNEKVLSDLFESLCAAIYITKGNDV 152 Query: 135 AGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 F+ KY + K ++AK QE A +Y ++F + + Sbjct: 153 LEVFLQKYLYPKMQDLEYKTLKNAKGRFQEIFQATTKSAGKYVISFDE---EKKIYEAKL 209 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 S G +K+ AEQ AA + LK+ I Sbjct: 210 IHSETIYGIGYGKNKKEAEQNAAEDALKKLVI 241 >gi|228472309|ref|ZP_04057075.1| ribonuclease 3 [Capnocytophaga gingivalis ATCC 33624] gi|228276512|gb|EEK15236.1| ribonuclease 3 [Capnocytophaga gingivalis ATCC 33624] Length = 232 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 94/224 (41%), Gaps = 17/224 (7%) Query: 10 EKRIGYAFANRSLLEKALTH---SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 E+ +G+ E+A T + S SYERLEFLGD ILG +I+ +F Sbjct: 2 EQLLGFPPKEIHYYEEAFTLGTVRTDSAQPHISYERLEFLGDAILGAVIAHFVFLQAPDK 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ +V E +Q+ +L L ++ +I +++E+L+ A+ Sbjct: 62 NEGDLTKMRTRMVRRENLNQIGEDLRLREYLLADKHTLLSG-----NIAGNLLEALVGAI 116 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD G A F+ + L K+ + EWA K+ T + P Sbjct: 117 YLDRGYSKATEFIHRILIDTNLSMRDLENKVISYKSLMVEWAQ-KYHKTIAF--VSEEDP 173 Query: 184 DHD---PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + F V I+ A+ D SK+ AE+ AA R G Sbjct: 174 TYKGRTKYFQAKVMINDKVFAKAHDTSKKKAEERAAKRAFFRAG 217 >gi|123967024|ref|YP_001012105.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9515] gi|123201390|gb|ABM72998.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9515] Length = 249 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 7/204 (3%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +ALTHSS +YE+LEF GD +L L S + + + G S + LVS E Sbjct: 42 FNEALTHSSADKIV--NYEKLEFFGDAVLRLSASDFIERKYKNMSVGNRSELRSQLVSDE 99 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141 +++ +++ + I D S +I A+ E+LI A+Y I ++D Sbjct: 100 WLTELGKKIFIEKVIVKGPKAIGDENS-KDTIIAETSEALIGAIYKCFNSIHEVNIWLDN 158 Query: 142 YWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGL 198 +W++ A + +AK+ LQEW P YK+ S D RF+ + ++G Sbjct: 159 FWEKDAELYLKAPHKYNAKSALQEWCQKHGFDLPIYKIYEVSSSHGDPKRFSCDIYLNGS 218 Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222 A S + AE+ AA ++++ Sbjct: 219 KEASSFGNSHKKAEKNAATILIEK 242 >gi|281339672|gb|EFB15256.1| hypothetical protein PANDA_009266 [Ailuropoda melanoleuca] Length = 1917 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 100/245 (40%), Gaps = 36/245 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1668 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1727 Query: 65 SAKEGELSVRFNSLVSAETCSQVA--------RELDLASFI--RVSSDLRKDVCSF---- 110 G L+ ++LV+ + +A + F+ ++ + + + S Sbjct: 1728 QHSPGVLTDLRSALVNNTIFASLAYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRS 1787 Query: 111 -----------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK-SGKFRRD 156 + D+ ESL A+Y+D G+ E+ + K S R Sbjct: 1788 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRS 1847 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 EL E +P + +D + V VE+ G +G+ S R A+ AA Sbjct: 1848 PVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAA 1900 Query: 217 AEVLK 221 L+ Sbjct: 1901 RRALR 1905 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1295 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1352 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1353 VSNCNLYRLGKKKGLPSRMVVS 1374 >gi|119510841|ref|ZP_01629966.1| Ribonuclease III [Nodularia spumigena CCY9414] gi|119464520|gb|EAW45432.1| Ribonuclease III [Nodularia spumigena CCY9414] Length = 239 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 106/212 (50%), Gaps = 10/212 (4%) Query: 5 RYSTLEKRIGYAF---ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + +L +R+G LL+ ALTH ++S S +YE+LEF+GD ++ L + +L+ Sbjct: 11 QLESLVRRLGLPPGLPIKWDLLDLALTHPTVSESA--NYEQLEFVGDAVVRLAAAVVLWE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + G+ + + LVS +Q+ARE L ++ V+ D S AD E+ Sbjct: 69 TYPDCPVGDFAAIRSVLVSDRILAQLAREYSLQLYLLVAGSATSDKIGL-ESRLADAFEA 127 Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ ALYL +E+ ++D + K+ A ++ R + K LQEW A+F V PEY+VT Sbjct: 128 VLGALYLSTNNLELIRPWLDFHLKKLATEIRLDPARLNYKAALQEWTQAEFKVLPEYRVT 187 Query: 179 FRSGPDHDP-RFTVVVEISGLAPAQGMDCSKR 209 + + + RF V + +G S + Sbjct: 188 EVNQSNQNQERFAAEVWLHDNKLGEGKGRSIK 219 >gi|307448395|pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni gi|307448397|pdb|3O2R|C Chain C, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 170 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 2/141 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF+ F Sbjct: 27 NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 84 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I Sbjct: 85 KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIG 144 Query: 125 ALYLDGGIEVAGTFVDKYWKQ 145 A++L+ G E A T + ++ Sbjct: 145 AIHLEAGFEFAKTIALRLIEK 165 >gi|17552834|ref|NP_498761.1| DiCer Related family member (dcr-1) [Caenorhabditis elegans] gi|21431882|sp|P34529|DCR1_CAEEL RecName: Full=Endoribonuclease dcr-1 gi|15145374|gb|AAA28101.2| Dicer related protein 1, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 1845 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 60/258 (23%), Positives = 101/258 (39%), Gaps = 46/258 (17%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 +++ LE++IGY F R+ L +A TH+S ++ Y+RLEFLGD +L +I+ LF Sbjct: 1576 FQFTQLEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFED 1635 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSF----------- 110 G L+ ++LV+ + +A + + FI + L + F Sbjct: 1636 SRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFVKLCSERNFDT 1695 Query: 111 ------------------------MTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWK 144 + D+ ES+ A+YLD G ++ + + Sbjct: 1696 NFNAEMYMVTTEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMR 1755 Query: 145 -QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 L R EL E+ +K + ++ SG + V VE+ G Sbjct: 1756 GTIELCCANPPRSPIRELMEFEQSKVRFSKMERIL-ESG-----KVRVTVEVVNNMRFTG 1809 Query: 204 MDCSKRAAEQVAAAEVLK 221 M + R A+ AA LK Sbjct: 1810 MGRNYRIAKATAAKRALK 1827 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 2/100 (2%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL ALT S+ + S ER E +GD L + L++ EG+LS + VS Sbjct: 1331 LLLTALTTSNAADGM--SLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSN 1388 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ ++L + I + D I ++ Sbjct: 1389 CNLYRLGKKLGIPQLIVANKFDAHDSWLPPCYIPTCDFKA 1428 >gi|113953295|ref|YP_729437.1| ribonuclease III [Synechococcus sp. CC9311] gi|113880646|gb|ABI45604.1| ribonuclease III [Synechococcus sp. CC9311] Length = 254 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 9/197 (4%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 L +ALTH+S +E+LEFLGD +L L S + + GE S L Sbjct: 33 QLEHLNEALTHTSTG--LARHHEQLEFLGDAVLRLAASDFIESEHPQMPVGERSALRAQL 90 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG-IEVAGT 137 VS +++ + + ++V S D + ++++A+ E+LI A+Y G + Sbjct: 91 VSDRWLAELGTTIGIEVLLQVGSKASGDQAA-RSTLRAEHCEALIGAIYRISGKVSPVQC 149 Query: 138 FVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVE 194 ++ YW++ R + + R ++K+ LQEW A+ P Y+ + DP RF V Sbjct: 150 WLTPYWRETSRDVLADPHRGNSKSALQEWTQAQGLGLPIYECHEVNKRHGDPRRFHCQVF 209 Query: 195 ISGL--APAQGMDCSKR 209 I A+ S+R Sbjct: 210 IQDQNSPTAEAWGGSRR 226 >gi|195424855|gb|ACF96960.1| dicer-1 [Litopenaeus vannamei] Length = 2473 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 65/255 (25%), Positives = 102/255 (40%), Gaps = 46/255 (18%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E++IGY F +RS L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 2217 YQVFEEKIGYTFRDRSYLLQASTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 2276 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSF------------- 110 G L+ ++LV+ + +A + D + R S + + F Sbjct: 2277 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGPDRVIRDFVKMQEENGHKINE 2336 Query: 111 -----------------MTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALK-S 150 + DV ES+ A++LD G ++ + + S Sbjct: 2337 EYYFMEEDEREAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCPEIERFS 2396 Query: 151 GKFRRDAKTELQEW--AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 G + EL E AKFG PE ++ D + V VEI G G+ + Sbjct: 2397 GVVPKSPIRELLEMEPETAKFGK-PE-RLV-------DGKVRVSVEIFGKGSFSGVGRNY 2447 Query: 209 RAAEQVAAAEVLKRE 223 R A+ AA L+ Sbjct: 2448 RIAKSTAAKRALRHL 2462 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 14/149 (9%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + + + S++ +ALT S+ + + ERLE +GD L I+T L+ + EG+ Sbjct: 1953 DLLNHPGPSPSVILQALTMSNANDGV--NLERLETIGDSFLKYAITTFLYCTYPQRHEGK 2010 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAAL 126 LS + VS ++ + L + + D F+ ++ E+LI Sbjct: 2011 LSYLRSKQVSNLNLYRLGKRKGLGECMVATKFEPHDNWLPPGYFVPR---ELEEALI--- 2064 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 D G+ + L S + RR Sbjct: 2065 --DSGVPAGHWNMADLPGLHDLASDEIRR 2091 >gi|225012041|ref|ZP_03702478.1| Ribonuclease III [Flavobacteria bacterium MS024-2A] gi|225003596|gb|EEG41569.1| Ribonuclease III [Flavobacteria bacterium MS024-2A] Length = 236 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 12/209 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + L+K++ N+ L +KA THSS++ +E ++ERLEFLGD +L +++ LFN Sbjct: 8 FIQLQKKLNIRTRNKELYKKAFTHSSVNLKDKEGNTINFERLEFLGDALLSTIVAEYLFN 67 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 AKEGEL+ +VS + + +++ L +SS +F +I +++ES Sbjct: 68 FHPEAKEGELTKLRAKIVSRSQLNSIGKQMGLFELADISS----HHKTFGENIHGNLIES 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178 LI AL++D G +V KY + + K+ L EW+ + E + Sbjct: 124 LIGALFIDKGYNKTKDYVLKYMLDPYIDMDELDNMVLSYKSLLIEWSQKQKQEL-EIRTE 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 G D + +T + + ++ S Sbjct: 183 NDGGLDPNINYTCQIYLGKKLISKARGLS 211 >gi|163754630|ref|ZP_02161752.1| putative ribonuclease III [Kordia algicida OT-1] gi|161325571|gb|EDP96898.1| putative ribonuclease III [Kordia algicida OT-1] Length = 244 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 92/208 (44%), Gaps = 12/208 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ LE +G+ + + +KA TH S+ + +YERLEFLGD +L +IS LF Sbjct: 19 FAELEDILGFKTKRKKIYKKAFTHRSMNKKDAKGNSVNYERLEFLGDAMLSSVISAYLFT 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 S EG L+ + +VS E +++ R+L L ++ R +F +I ++ E+ Sbjct: 79 EVPSGNEGYLTKMRSKIVSREHLNELGRDLKLIDLVQ----SRIPKDNFGENIHGNLFEA 134 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178 LI A++LD G + F+ + + K+ L EW + +Y V Sbjct: 135 LIGAIFLDKGYKYCERFIHYRVISPYVDIERLEGKVISYKSLLIEWCQKEKK-NFKYDVY 193 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDC 206 +G D F V + I + Sbjct: 194 EDTGNDELKHFAVKLFIDNRVVGKARAT 221 >gi|255565079|ref|XP_002523532.1| Ribonuclease III, putative [Ricinus communis] gi|223537239|gb|EEF38871.1| Ribonuclease III, putative [Ricinus communis] Length = 1633 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 106/245 (43%), Gaps = 29/245 (11%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ S+LE + + F NR L+ +A H S + Y+RLEFLGD +L LI++ LF+ Sbjct: 1203 PSIDVSSLEDSLDHQFVNRGLVLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLFS 1262 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-----------------LR 104 + K G L+ ++LV+ + VA + F+ S + Sbjct: 1263 VYPKLKPGLLTDLRSALVNNRAFAIVAVDRSFNEFLICDSGNLSEAIETYVNFVKRPAVE 1322 Query: 105 KDV--CSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTEL 161 KD + D+VES I A++LD G ++ + + + L S + EL Sbjct: 1323 KDSLEGPKCPKVLGDLVESCIGAIFLDTGFDLNCIWKLMLSFLDPILNSSNVLLNPFREL 1382 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---AQGMDCSKRAAEQVAAAE 218 E+ + ++ R D F V +++G A + +K+ A ++A+ + Sbjct: 1383 HEFCESHKWKL-QFPTLKR-----DMNFLVEAKVTGKDICLDASANNSNKKEAIRIASEQ 1436 Query: 219 VLKRE 223 ++ + Sbjct: 1437 IIVKL 1441 Score = 66.3 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 42/157 (26%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98 ERLE LGD L + LF D+ EGEL+ + ++ V+ ++A +L +IR Sbjct: 1034 ERLEILGDAFLKFAVGRHLFLLHDTLDEGELTRKRSNAVNNSNLLKLASRRNLQVYIRDQ 1093 Query: 99 --------------------------VSSDLRKDVCSFMT--------------SIQADV 118 SS+ T ADV Sbjct: 1094 PFDPRQFFALGHPCPVICTKESEGSIHSSNRSNAKGQENTIEVRCSRGHHWLYKKTIADV 1153 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 VE+L+ A +D G A F+ + +++ + Sbjct: 1154 VEALVGAFIVDSGFRAATAFLKWLGIRVNIEASDVTK 1190 Score = 36.2 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 17/40 (42%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 AK+ L + A P ++ + GP H F+ V + Sbjct: 1551 AKSRLHDICAANCWKPPLFECCYEEGPSHLKSFSYKVIVE 1590 >gi|40063138|gb|AAR37985.1| ribonuclease III [uncultured marine bacterium 561] Length = 149 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 2/147 (1%) Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 + + + L + + RK SI AD VE++ A+ LD G + A + Sbjct: 1 RGTFLAALGEKYALGECLTLGVGERKSGGRHRASILADTVEAIAGAMLLDAGYDNAAPVI 60 Query: 140 DKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 ++ + +D+KT LQEW A+ P Y + GPDH F VV I G Sbjct: 61 LHWFADALGELQVDGDKDSKTLLQEWLQARNLPLPSYDLVSVEGPDHAQEFEVVCLIKGQ 120 Query: 199 APA-QGMDCSKRAAEQVAAAEVLKREG 224 A G S+R AEQ AA+ + G Sbjct: 121 KNAFSGRGSSRRNAEQQAASVAIGELG 147 >gi|218439615|ref|YP_002377944.1| ribonuclease III [Cyanothece sp. PCC 7424] gi|218172343|gb|ACK71076.1| Ribonuclease III [Cyanothece sp. PCC 7424] Length = 235 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 93/197 (47%), Gaps = 15/197 (7%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + SLL+ AL H S S +Y++LEF+GD ++ L + +L + A GE + + + Sbjct: 28 DWSLLDLALIHPSFSKEV--NYQQLEFVGDAVVRLAAAEVLLETYPEAPVGEFAALRSIM 85 Query: 79 VSAETCSQVARELDLASFIR----VSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIE 133 VS T ++ A L ++ VS D + AD E+++ ALYL ++ Sbjct: 86 VSDRTLAEFADVFGLERYLLTAAYVSGDEAGRISR-----LADAFEAVLGALYLSTHTMQ 140 Query: 134 VAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH-DPRFT 190 + ++D+ +++A + R + K LQEW A + + P+Y+V ++ + RF Sbjct: 141 LVRPWLDELLEKKAAEILQDPARLNYKDALQEWTQAHYKLLPQYRVQENPLKNNLEERFL 200 Query: 191 VVVEISGLAPAQGMDCS 207 V ++ G + Sbjct: 201 AEVWLNDQKLGMGKGRT 217 >gi|26553818|ref|NP_757752.1| ribonuclease III [Mycoplasma penetrans HF-2] gi|26453825|dbj|BAC44156.1| ribonuclease III [Mycoplasma penetrans HF-2] Length = 244 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 15/227 (6%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 L + + ++G L +ALTH+S ++ + +Y+RLEFLGD ++ LIS LF Sbjct: 13 LDVTKILNKLGIKTNKYYLYVEALTHNSYNNEKKVGYTYQRLEFLGDAVISKLISEFLFK 72 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + S E +++ +LV++E + + EL L + + + + + I+AD+ E+ Sbjct: 73 N-KSLDEQKMTEIRKNLVNSEIFKKASEELGLLDYAFIGKGINLE--NDTKKIKADLFEA 129 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAH-----AKFGVTPEY 175 A+++D G + +++K + + D K+ +QE Y Sbjct: 130 FAGAIFIDKGEDEVWKYLEKTILKYYENNELVNPIDYKSRIQELFQYNIAKKHKKAHFYY 189 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + F + + G+ +K+ A++ AA ++ Sbjct: 190 QTVEIE----NNMFKSSLIYDEIIYGVGVGKTKKEAQKSAAKIAYEK 232 >gi|297812215|ref|XP_002873991.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297319828|gb|EFH50250.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 1693 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 88/239 (36%), Gaps = 29/239 (12%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE ++ Y F ++ LL +A H S + Y+RLEFLGD +L L+++ F F Sbjct: 1283 NLEALENQLDYNFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFP 1342 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK------------------- 105 K G+L+ + V+ + + VA L F+ S Sbjct: 1343 KLKPGQLTDLRSLSVNNKALANVAVSFSLKRFLFCESVYLHEAIEDYTNFRAASPLASGP 1402 Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEW 164 + D+VES + AL+LD G + + + + EL E Sbjct: 1403 SEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIEL 1462 Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMDCSKRAAEQVAAAEVL 220 + + + D F+V ++++ +KR + + AA ++ Sbjct: 1463 CQSYKWD----REISATKKDGG--FSVELKVTKKGCCLTVSATGRNKRESTKKAAQLMI 1515 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 43/156 (27%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALT + + S ERLE LGD L +S LF H D EGEL+ R + V+ Sbjct: 1098 EALT--TEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDRLDEGELTRRRSKAVNNSNL 1155 Query: 85 SQVARELDLASFIR---------------------------------------VSSDLRK 105 ++A + +L +IR +S++R Sbjct: 1156 CRLAIKRNLQVYIRDQALDPTQFFAFGHPCRVTCDEVTSEEVHSLNRVPGLLESNSEIRC 1215 Query: 106 DVCSFM--TSIQADVVESLIAALYLDGGIEVAGTFV 139 ADVVE+L+ A +D G + A F+ Sbjct: 1216 SKGHHWLYKKTIADVVEALVGAFLVDSGFKGAVKFL 1251 Score = 38.5 bits (89), Expect = 0.70, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 140 DKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 D+ ++ +++G+ + AK+ L E A P ++ GP H F V + Sbjct: 1596 DRLPQKTIIEAGRPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFFYKVILE 1653 >gi|157285013|gb|ABV31246.1| dicer-like 4 [Physcomitrella patens] Length = 1445 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 63/253 (24%), Positives = 110/253 (43%), Gaps = 29/253 (11%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +S + S LE + Y F N+ LL +ALTH+S + Y+RL FLGD +L LI+ + Sbjct: 1169 LSEAKVSELEILLNYKFQNKGLLVEALTHASCRRHSGDCYQRLGFLGDAVLDFLITKHFY 1228 Query: 61 NHFDSA--KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS------------DLRKD 106 + + G L+ ++ V+ E ++VA +L ++ +S D Sbjct: 1229 ANSANLKRDPGLLTDLRSAAVNNECFARVAVRHNLHLYLLHNSSDLAARVDKYVHGSTTD 1288 Query: 107 VCSFMTS-------------IQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGK 152 VC+ + + +D+VESL A++LD G ++ + V K + + Sbjct: 1289 VCALSEAFLLSKHLSCSSMQVLSDLVESLAGAVFLDSGYKLDTVWNVFKQLLKPLVTPAT 1348 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 R + EL E + P YK + D D TV ++ G +++A Sbjct: 1349 LRLEPIRELWELCQTEKFGEPNYKKKREAMGDFDMTVTVELK-DETITGVGRKPDEKSAR 1407 Query: 213 QVAAAEVLKREGI 225 +VAA + L+ + Sbjct: 1408 KVAAIQALETLKV 1420 Score = 78.6 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 19/132 (14%) Query: 21 SLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 +L+ +A+T + QES+ E LE LGD L + +S LF + EGELS R +L Sbjct: 1012 NLMLEAIT----TSKCQESFSLEGLELLGDAFLEVSVSERLFLLHNRLDEGELSKRRTNL 1067 Query: 79 VSAETCSQVARELDLASFIR---VSSDLRKDVCSFMT----------SIQADVVESLIAA 125 + + ++ RE + ++IR S ADV E+LI A Sbjct: 1068 ICNKMLERLGRERGIMNYIRDTQFSPKEWATPGRVRETQCKLPPLQGKTIADVFEALIGA 1127 Query: 126 LYLDGGIEVAGT 137 Y+ GG+E A Sbjct: 1128 HYIHGGVEAAQA 1139 >gi|213405195|ref|XP_002173369.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces japonicus yFS275] gi|212001416|gb|EEB07076.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces japonicus yFS275] Length = 325 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 16/217 (7%) Query: 18 ANRSLLEKALTHSSISHSY-----------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L E+ TH S ++ + ERLEFLGD +L +++ +++ F +A Sbjct: 103 RQKKLEEQVFTHKSRANELFPHCLDARKLLSKHNERLEFLGDDVLEGIVTKIIYERFPNA 162 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS +LV + S+ A L +++ K T + ADV E+ + AL Sbjct: 163 NEGELSKLRATLVGNDMVSKFATLYGLHEKLQLGLCGEKSQLRKCTKVVADVFEAYLGAL 222 Query: 127 YLDGGIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD I+ A +V + + ++ + AK ELQ K G EY+ + Sbjct: 223 YLDNQIDAAFEWVKQLIEPELVRFKMEPPINKLAKAELQRRI-GKAGGKVEYRCIEKKM- 280 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + V I+G + G+ + + A AA + L Sbjct: 281 GQREEYKVACIINGSEVSWGVGSNIKLAGTRAAMKAL 317 >gi|307448396|pdb|3O2R|B Chain B, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni gi|307448398|pdb|3O2R|D Chain D, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 144 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 47/141 (33%), Positives = 78/141 (55%), Gaps = 1/141 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ + Y F +++LL ALTH S + ERLEFLGD +L L++ LF+ F Sbjct: 1 NIEKLEQSLTYEFKDKNLLIHALTHKSFXKK-SYNNERLEFLGDAVLDLVVGEYLFHKFA 59 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I Sbjct: 60 KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIG 119 Query: 125 ALYLDGGIEVAGTFVDKYWKQ 145 A++L+ G E A T + ++ Sbjct: 120 AIHLEAGFEFAKTIALRLIEK 140 >gi|170076696|ref|YP_001733334.1| ribonuclease III [Synechococcus sp. PCC 7002] gi|169884365|gb|ACA98078.1| ribonuclease III [Synechococcus sp. PCC 7002] Length = 239 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 12/212 (5%) Query: 5 RYSTLEKRIG---YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 L R+G Y LL+ ALTH SIS ++YE+LEF+GD ++ L S +L+ Sbjct: 9 SLRRLIDRLGLPDYHGMRWDLLDLALTHPSISPD--KNYEQLEFIGDAVVRLAASEVLYA 66 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + GE + + LVS T ++ A +L ++ + S+ AD E+ Sbjct: 67 EYPAEPVGEFAAIRSILVSDRTLAEFAHRYNLKKYLSYHG---HYHGAGEISLLADAFEA 123 Query: 122 LIAALYL-DGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ AL+L + + ++D++ + +A +K R + K LQ W+ ++ P Y+VT Sbjct: 124 MLGALFLTTNDLSLVHPWLDEHLRHKAAEIKQDPARENYKDALQTWSQGEYQKLPTYQVT 183 Query: 179 FRSGPDH-DPRFTVVVEISGLAPAQGMDCSKR 209 H + RF V++ +G+ SK+ Sbjct: 184 ENPEFRHEEERFLAEVKLGDTLLGKGVGRSKK 215 >gi|316976669|gb|EFV59916.1| putative RNase3 domain protein [Trichinella spiralis] Length = 1460 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 5/172 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHS--SISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+RIG F + LL +A T + +RLEFLGD +L L+ + L+ H Sbjct: 783 KLTEFEQRIGVRFNHIRLLARAFTRKCVGYNFLTLGHNQRLEFLGDSVLQLVTTEYLYKH 842 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQADVVES 121 F +EG LS+ +SLV+ T + + +L++ +FI LR + +AD+VE+ Sbjct: 843 FPDHQEGHLSLLRSSLVNNRTQAVICDDLEIPNFILQPPAFLRNEPQELRMKDKADLVEA 902 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGV 171 + AL++D ++ FV + R + + +R D K++LQ+ A Sbjct: 903 FLGALFVDHSLDYCAAFVRHCFLPRLKQFIEEQRWCDPKSQLQQCCLALRNP 954 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 79/249 (31%), Gaps = 77/249 (30%) Query: 1 MSALRYST----LEKRIGYAFANRSLLEKALTHSSI------------------------ 32 ++ +R+ ++RI Y+F SLLE A TH S Sbjct: 541 LNHIRFHRCLRVFQQRIDYSFRKPSLLELAFTHPSYRADSGTNADHVRNVLNNCGLRQLE 600 Query: 33 --SHSYQESYER-----------------------------LEFLGDRILGLLISTLLFN 61 S R LE+LGD ++ L + LF Sbjct: 601 FGSKRTNPWNSRKRGVSCLVNVMSRMGEKKSRASSTVNNERLEYLGDAVIEFLTTIHLFY 660 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +EG L+ +V S++A ++ L F+ + M A+ E+ Sbjct: 661 IFPDLEEGALAPYRTLMVQNSHLSKLAAKMGLDEFMLFAHGPDLCFEEDMRHAMANAFEA 720 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV--TPEYKVTF 179 ++ A+YLDGG+ VA ++ W A V P Sbjct: 721 ILGAVYLDGGVHVADRVFGRFLFPPD----------------WNQALHWVWFHPPRHPLQ 764 Query: 180 RSGPDHDPR 188 + PD D Sbjct: 765 QEYPDGDRH 773 >gi|229495315|ref|ZP_04389050.1| ribonuclease III [Porphyromonas endodontalis ATCC 35406] gi|229317758|gb|EEN83656.1| ribonuclease III [Porphyromonas endodontalis ATCC 35406] Length = 298 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 33/239 (13%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--------------ESYERLEFLGDRI 50 + TLE+ +G+A ++ AL S + S ++ +RLEFLGD I Sbjct: 24 DWKTLEQILGFAIRDKEYYRLALIDPSTTASGNGGKRAAGRSKMTSNDNNDRLEFLGDSI 83 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 +G ++S L+ + ++ G LS + +VS + +A+ + + I+ SS + Sbjct: 84 IGAVVSETLYRTYPNSPVGALSEQKAKIVSRKIGDTIAKRMGIDGLIQHSS--ENFLAKD 141 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAH 166 + +E+++ A+YLD G + A FV+ +++ + K +L EW Sbjct: 142 AP---GNALEAIVGAIYLDRGFDFAHQFVNHKMLGIYREIRETQPDLGTNFKNKLIEWGL 198 Query: 167 AKFGVTPEYKVTFRSGPDHDP----RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K T E+ + H P F V I +K+ +EQ AA L+ Sbjct: 199 -KHKCTVEFCLI-----AHAPGPRGYFVSQVFIDNQPMGHSKGSTKKGSEQGAAKLALE 251 >gi|156553056|ref|XP_001605287.1| PREDICTED: similar to dicer-1 [Nasonia vitripennis] Length = 1917 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 59/247 (23%), Positives = 95/247 (38%), Gaps = 48/247 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y +LE+ IGY F NRS L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1657 YDSLERSIGYTFRNRSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1716 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A + R +S L + F+ Sbjct: 1717 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLNTVIDRFVRIQEENGHSISE 1776 Query: 112 ---------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 DV ESL A+YLD + + + + ++ Sbjct: 1777 EYYLIGEREFEEAEEAEDVEVPKALGDVFESLAGAIYLDSNMSLDAVWAVYFEIMKSEIE 1836 Query: 151 GKFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 K+ ++E AKFG D R V V++ G +G+ Sbjct: 1837 QFSANVPKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFGKGSFKGIG 1888 Query: 206 CSKRAAE 212 + R A+ Sbjct: 1889 RNYRIAK 1895 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 23/170 (13%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 G++ + SL+ +ALT S+ + + ERLE +GD L I+T LF +++ EG+LS Sbjct: 1370 GHSGPSPSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLFCTYNNIHEGKLSH 1427 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIA----- 124 + VS ++ R+ L + S D C ++ ++ ++LI Sbjct: 1428 LRSKQVSNLNLYRLGRQKMLGESMIASKFEPHDNWLPPCYYVPK---ELEQALIESGVPS 1484 Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 A++ I F ++ ++ K K+ E + ++ G Sbjct: 1485 AMWNQADIPPFSRFSEINDLVRETEHKLEII----KS---ELSQSEHGAL 1527 >gi|198421916|ref|XP_002122382.1| PREDICTED: similar to rCG20888 [Ciona intestinalis] Length = 2053 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 59/269 (21%), Positives = 97/269 (36%), Gaps = 63/269 (23%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S E++I Y F N++ L +A TH+S ++ + Y+RLEFLGD +L LI+ LFN Sbjct: 1787 LSGFERKINYTFKNKAYLLQAFTHASYYYNTVTDCYQRLEFLGDAVLDFLITRHLFNDER 1846 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF-------------- 110 G L+ ++LV+ + +A D + + S + Sbjct: 1847 HHSPGALTDLRSALVNNTIFASLAVHYDFHKYFKSISPELHHIIEDFVMYQQKQEDAQGM 1906 Query: 111 --------------------------------MTSIQADVVESLIAALYLDGGIEVAGTF 138 + D+ ES+ A+Y+D G++++ + Sbjct: 1907 DAHLMRDYDRVEIVAPSSLEKDEEEGENEDVEVPKALGDIFESVAGAIYMDSGMDLSSVW 1966 Query: 139 -VDKYWKQRALK--SGKFRRDAKTELQEW---AHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 V ++ S R EL E Y D + V Sbjct: 1967 KVYSVMMLPLIEKFSACVPRSPVRELLEMEPETAKFSCAEKRY----------DGKVRVT 2016 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 VEI G +G+ S R A+ AA L+ Sbjct: 2017 VEIIGKGRFKGVGRSYRIAKSAAARRALR 2045 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 L+ +ALT S+ S + + ERLE LGD L ++ L+ + + EG+LS + V Sbjct: 1458 PGLILQALTLSNASDGF--NLERLEMLGDSFLKHAVTVYLYCTYPESHEGKLSYMRSKKV 1515 Query: 80 SAETCSQVARELDL 93 S ++ ++ L Sbjct: 1516 SNYNLYRIGKQFGL 1529 >gi|57236094|gb|AAW48724.1| dicer-1 [Aedes aegypti] Length = 2192 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 61/262 (23%), Positives = 98/262 (37%), Gaps = 53/262 (20%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS E +GY +RS L +A+TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1937 YSAFEDSLGYH-HSRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A D + R +S L + F+ Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHIISE 2055 Query: 112 ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151 DV ES+ A++LD + + + Sbjct: 2056 EYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMSLDAVWKVYRSMMGPEIEQFS 2115 Query: 152 KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K+ ++E AKFG D R V VE+ G +G+ Sbjct: 2116 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVEVFGKGTFRGIGR 2165 Query: 207 SKRAAEQVAAAEV---LKREGI 225 + R A+ AA LK+ G+ Sbjct: 2166 NYRIAKCTAAKCALRQLKKMGL 2187 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 9/110 (8%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1654 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYENVHEGKLSHLRSKQV 1711 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 S ++ R L + + D C ++ ++ ++LI A Sbjct: 1712 SNLNLYRLGRRKVLGESMIATKFEPHDNWLPPCYYVPK---ELEQALIDA 1758 >gi|224109196|ref|XP_002315119.1| dicer-like protein [Populus trichocarpa] gi|222864159|gb|EEF01290.1| dicer-like protein [Populus trichocarpa] Length = 1408 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 101/243 (41%), Gaps = 29/243 (11%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62 + LE + Y+F + SLL +ALTH S Y+RLEFLGD +L LI+ L+ Sbjct: 1153 VNVRYLESLLNYSFRDPSLLVEALTHGSYMLPEIPSCYQRLEFLGDAVLDYLITMHLYKE 1212 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSF----------- 110 + G L+ ++ V+ + +Q A + DL I S DL K + Sbjct: 1213 YPGMSPGLLTDLRSASVNNDCYAQSAVKGDLHKHILHTSQDLHKHIVETAEIFQKSSLGS 1272 Query: 111 ---------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159 + DV+ESL A+ +D G E+ + + + R Sbjct: 1273 TFGWESETSFPKVLGDVIESLAGAILVDSGYNKEIVFQSIRPLLEP-LITPATVRLHPAR 1331 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAE 218 EL E + +YK + S + T+VV +G+ K+ A+++A+ E Sbjct: 1332 ELSELCQKQHF---DYKKSVVSYNGRNASITIVVGANGVTFKHTATAADKKTAKKLASKE 1388 Query: 219 VLK 221 VLK Sbjct: 1389 VLK 1391 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 56/163 (34%), Gaps = 34/163 (20%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98 E LE LGD L S LF + + EG LS++ ++S + + L FIR Sbjct: 1001 ESLETLGDSFLKYAASQQLFKLYQNHHEGLLSMKKEKIISNAALCRRGCDHKLPGFIRNE 1060 Query: 99 -----------------VSSDLRKDVCSF---------MTSIQADVVESLIAALYLDGGI 132 + S+ C + ADVVE+LI A YL G Sbjct: 1061 SFDPKLWMIPGDKCGSDLLSEEPLSECRKIYVRGRRKVKSKTVADVVEALIGA-YLSTGG 1119 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 EV F + +K + Q A+ V Y Sbjct: 1120 EVLALFFMDWIG---IKVDFMIVPYERHFQ--LQAEKFVNVRY 1157 >gi|218283082|ref|ZP_03489177.1| hypothetical protein EUBIFOR_01763 [Eubacterium biforme DSM 3989] gi|218216151|gb|EEC89689.1| hypothetical protein EUBIFOR_01763 [Eubacterium biforme DSM 3989] Length = 198 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 1/145 (0%) Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +EG+++ V T + R+L F+R+ K SI AD E+ I Sbjct: 36 PKMREGQMTTLRAQTVCESTLYVLNRQLGWYEFLRLGVGEEKTGGRNRESILADQFEACI 95 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+Y+D G V + KY K + + D KT LQE A T +YK+ G Sbjct: 96 GAIYIDQGYHVCDEILTKYMKPVFKQEKSEAVTDYKTHLQEVIQADSRKTIQYKLLEEKG 155 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCS 207 P + P FT+ V + + QG + Sbjct: 156 PSNAPTFTMGVYLDDILLGQGTSST 180 >gi|71893762|ref|YP_279208.1| ribonuclease III [Mycoplasma hyopneumoniae J] gi|72080732|ref|YP_287790.1| ribonuclease III [Mycoplasma hyopneumoniae 7448] gi|71851889|gb|AAZ44497.1| ribonuclease III [Mycoplasma hyopneumoniae J] gi|71913856|gb|AAZ53767.1| ribonuclease III [Mycoplasma hyopneumoniae 7448] Length = 227 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 17/212 (8%) Query: 17 FANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 ++ + +ALTH S + + + YE LEFLGD ++ +S +++++F EG + Sbjct: 18 PNSKQIYIQALTHKSYNFINPDKPHYEMLEFLGDSVINYAVSKVIYDNF-YKNEGNSTQI 76 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 + L S + + +++ L +++ + ++AD+ ES AA+ LD G E Sbjct: 77 RSLLTSTSSLANATKKVGLMNYVLLGRGA--SEIRENNKLKADIFESFCAAILLDQGFEK 134 Query: 135 AGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHA-KFGVTPEY---KVTFRSGPDHDPRF 189 F+ +Y +K + K +D K+ QE Y K+ D F Sbjct: 135 LNEFLSEYLYKDVNFDTEKQYKDPKSIFQEKIQTFSTSNKIHYLHTKLV-------DGTF 187 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V + G S + AE AA L Sbjct: 188 RVDLIWEKKKYGIGYGRSIKEAEFAAATNALN 219 >gi|318042834|ref|ZP_07974790.1| putative ribonuclease III [Synechococcus sp. CB0101] Length = 242 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 60/188 (31%), Positives = 91/188 (48%), Gaps = 7/188 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 ++ALTH+S + ++E+LEFLGD +L L S L H GE S LVS Sbjct: 36 DEALTHTSAGLAI--NHEQLEFLGDAVLRLAASEYLEQHHPELSVGERSALRAQLVSDRW 93 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVDKY 142 ++V + ++ +R+ D + T ++A+ E+LI ALY G + ++ Sbjct: 94 LAEVGEAIGISDALRIGPTAGGDATALST-LRAEATEALIGALYRAFGSLAPVHQWLTPS 152 Query: 143 WK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLA 199 W+ RA+ S R + K+ LQEW+ AK P Y+ RS DP RF V + G Sbjct: 153 WERTSRAVLSDPHRGNCKSALQEWSQAKALGLPTYRTKERSKRHGDPQRFHCHVGLEGWI 212 Query: 200 PAQGMDCS 207 A+G S Sbjct: 213 SAEGWGGS 220 >gi|17231599|ref|NP_488147.1| ribonuclease III [Nostoc sp. PCC 7120] gi|17133242|dbj|BAB75806.1| ribonuclease III [Nostoc sp. PCC 7120] Length = 202 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 5/175 (2%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +YE+LEF+GD ++ L + +L+ + G+ + + LVS +Q+ARE L + Sbjct: 6 NYEQLEFVGDAVVRLAAAVMLWETYPDCPVGDFAAIRSVLVSDRILAQLAREYGLELHLL 65 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRR 155 V+ D S AD E+++ ALYL +E+ ++D +++Q A ++ R Sbjct: 66 VAGSATSDKIGQ-ESRLADAFEAVLGALYLSTSNLELIRPWLDHHFRQLAAEIRLDPARL 124 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKR 209 + K LQEW A+F V PEY+V + + RF V + G +G S + Sbjct: 125 NYKAALQEWTQAQFKVLPEYRVVEINQANRTQERFAAEVWLHGNKLGEGKGRSIK 179 >gi|298207213|ref|YP_003715392.1| putative ribonuclease III [Croceibacter atlanticus HTCC2559] gi|83849849|gb|EAP87717.1| putative ribonuclease III [Croceibacter atlanticus HTCC2559] Length = 247 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 12/208 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFN 61 +S ++ +G+ N +KA TH S++ ++YERLEFLGD +L +I+ LF+ Sbjct: 19 FSAIQNLVGFKPTNLKPYKKAFTHRSLNEVDELGNAQNYERLEFLGDAMLSAIIAAHLFS 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG L+ +VS + +++ ++LDL S ++ + + +I ++ E+ Sbjct: 79 AVPGGNEGYLTKMRAKVVSRKHLNELGKDLDLVSLVKTNIPKTQFGA----NIHGNLFEA 134 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178 LI A+YLD G + F+ + + + + K+ L E+ Y V Sbjct: 135 LIGAIYLDKGYKSCKRFIHERVIEPYVDIEQLENKVISYKSLLIEYCQKTKKE-FHYDVY 193 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDC 206 +G F V + I A+ Sbjct: 194 EDTGVGEMKHFAVKLRIDKKVVAKARAT 221 >gi|301770225|ref|XP_002920522.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like [Ailuropoda melanoleuca] Length = 1931 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 59/260 (22%), Positives = 99/260 (38%), Gaps = 51/260 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR--------ELDLASFIR-----------------V 99 G L+ ++LV+ + +A D + + + Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVXXXXXXXXXXDYHKYFKAVSPELFHVIDDFVQFQL 1786 Query: 100 SSDLRKDVCSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKY 142 + + + S + D+ ESL A+Y+D G+ E+ Sbjct: 1787 EKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPM 1846 Query: 143 WKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K S R EL E +P + +D + V VE+ G Sbjct: 1847 MRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKF 1899 Query: 202 QGMDCSKRAAEQVAAAEVLK 221 +G+ S R A+ AA L+ Sbjct: 1900 KGVGRSYRIAKSAAARRALR 1919 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1352 VSNCNLYRLGKKKGLPSRMVVS 1373 >gi|242033791|ref|XP_002464290.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor] gi|241918144|gb|EER91288.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor] Length = 1385 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 95/246 (38%), Gaps = 32/246 (13%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLF 60 + + +LE + Y F++ SLL +ALTH S Y+RLEFLGD +L + + + Sbjct: 1128 NFINLRSLELMLDYNFSDPSLLLEALTHGSYQIAGTTACYQRLEFLGDAVLDHIFTDYFY 1187 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110 + + L+ ++ V+ + A + L I SS + Sbjct: 1188 HQYPECTPELLTDLRSASVNNSCYAHAAVKAGLHKHILHSSSALHKKMADYLDKFEQSFS 1247 Query: 111 -----------MTSIQADVVESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRRDAK 158 + + DV+ES+ A+Y+D + + K + D Sbjct: 1248 GPSHGWEAGICLPKVLGDVIESIAGAIYIDTKNDKKVVWRKMKRLLEPLATPDTLEIDPV 1307 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---AQGMDCSKRAAEQVA 215 EL E+ K + +Y V D +V VE+ A +KR A+++A Sbjct: 1308 KELHEFCDPK-TCSIKYTVARE-----DRVTSVAVEVQTKGTTYKATRTGLTKRDAKKLA 1361 Query: 216 AAEVLK 221 A VLK Sbjct: 1362 AKSVLK 1367 >gi|307169891|gb|EFN62400.1| Ribonuclease 3 [Camponotus floridanus] Length = 1167 Score = 150 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 8/165 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T S ++ S +RLEFLGD +L L++S L+ Sbjct: 990 KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1049 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ +T + V +L + + + T +AD++E+ Sbjct: 1050 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNP----KAELKTKDRADLLEAF 1105 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA 165 + ALY+D G++ F D + R + D K++LQ+ Sbjct: 1106 LGALYVDKGLKYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCC 1150 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 6/137 (4%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T SSI+H ERLEFLGD ++ L S LF+ F +EG L+ ++V + + + Sbjct: 841 TESSIAH-----NERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVL 895 Query: 88 ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147 A++L L ++ + + A+ E+L+ +L+LDGGIEVA + + Sbjct: 896 AKKLSLEEYMLYAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKSE 955 Query: 148 LKSGKFRRDAKT-ELQE 163 K + LQE Sbjct: 956 EDLAKVWVNYPRHPLQE 972 >gi|328905041|gb|AEB54796.1| dicer 2 [Litopenaeus vannamei] Length = 1502 Score = 150 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 107/248 (43%), Gaps = 38/248 (15%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFD 64 LEK+IGY F +RS + +A+THSS ++ + Y+RLEFLGD +L L++ +F F Sbjct: 1239 LDRLEKKIGYTFRDRSFIVQAVTHSSYVNNQVTDCYQRLEFLGDAVLDYLVTCHIFCRFT 1298 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110 G+LS + V +T + A + L + ++ L + F Sbjct: 1299 DYSPGQLSDLRSYFVKNDTLGRAAAKGKLHQHLLHLNPKLEASIDKFLSILHQDPLGEEL 1358 Query: 111 -------------MTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGK-FR 154 + D+VE++I A+YLD ++VA +++ S + + Sbjct: 1359 NTEDDVQDCEDVEIPKALGDMVEAIIGAVYLDSNRSLKVAWQVIERILGDLLNTSIQTIQ 1418 Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + +L E V E +V F G D + T VV++ G + R A++ Sbjct: 1419 LNPIRQLLE------EVPGEKQVEFVKGEDDGSEKSTYVVKVKGFGTFTASGKNYRVAKK 1472 Query: 214 VAAAEVLK 221 AA LK Sbjct: 1473 KVAAIALK 1480 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 32/72 (44%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A T S + + ERLE LGD L + LF +S EG LS LV +T Sbjct: 1015 AFTLKEASEDKEFNLERLELLGDSFLKFVTGEALFLRDESYHEGRLSQSRGKLVCNKTLF 1074 Query: 86 QVARELDLASFI 97 ++A + L I Sbjct: 1075 RLACQKGLEGKI 1086 >gi|190344934|gb|EDK36728.2| hypothetical protein PGUG_00826 [Meyerozyma guilliermondii ATCC 6260] Length = 525 Score = 150 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 95/230 (41%), Gaps = 21/230 (9%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L + H S ++S ERLEFLGD IL +++ ++F F +A Sbjct: 170 TIKDPELAARVFVHKSTTNSKSYLAMSELINSHNERLEFLGDSILNNVVTLIIFEQFPTA 229 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SL++ ++ + ++ + + D+ + I AD+ E+ I AL Sbjct: 230 SEGELSRIRASLINNAFLTEFSLAYGFDKKLKSNINEE-DLRNGKQKIYADLFEAYIGAL 288 Query: 127 YLDGGIEVA--GTFVDKYWKQR-------ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +D ++ ++ K K + + +DAK EL + P+Y+V Sbjct: 289 IIDRKYDITEIKAWLKKLMKDKLGSIARDMKGIKEVNKDAKAELYSLI-GTAALHPQYEV 347 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 G + +F + ++G G S + A AA L + + T Sbjct: 348 I-VEGDGSEKQFEIACTMNGEILGVGRAPSHKEAGLRAAMHALTNKPVLT 396 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 13/94 (13%) Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV--TPEYKVTFRSGPDHDPRFTVVVE 194 VD+ + + S DA+ +L G P+Y+V G F + Sbjct: 431 DIVDRQFPLVSDGSEVVDADARNQLYAIVTKNLGPDEIPQYQVEEIDG-----SFKARLS 485 Query: 195 ISGLAPAQGMDCSKRAAEQVAA------AEVLKR 222 I G + +D SK+ A A L+R Sbjct: 486 IRGRTLSTAVDVSKKKASNRCATLLLRNRAALER 519 >gi|312601347|gb|ADQ90602.1| Ribonuclease III [Mycoplasma hyopneumoniae 168] Length = 227 Score = 150 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 11/209 (5%) Query: 17 FANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 ++ + +ALTH S + + + YE LEFLGD ++ +S +++++F EG + Sbjct: 18 PNSKQIYIQALTHKSYNFINPDKPHYEMLEFLGDSVINYAVSKVIYDNF-YKNEGNSTQI 76 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 + L S + + +++ L +++ + ++AD+ ES AA+ LD G E Sbjct: 77 RSLLTSTSSLANATKKVGLMNYVLLGRGA--SEIRENNKLKADIFESFCAAILLDQGFEK 134 Query: 135 AGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHA-KFGVTPEYKVTFRSGPDHDPRFTVV 192 F+ +Y +K + K +D K+ QE Y T + D F V Sbjct: 135 LNEFLSEYLYKDVNFDTEKQYKDPKSIFQEKIQTFSTSNKIHYLHTKLA----DGTFRVD 190 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + G S + AE AA L Sbjct: 191 LIWEKKKYGIGYGRSIKEAEFAAATNALN 219 >gi|256087296|ref|XP_002579808.1| dicer-1 [Schistosoma mansoni] gi|238665295|emb|CAZ36047.1| dicer-1, putative [Schistosoma mansoni] Length = 2174 Score = 150 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 99/268 (36%), Gaps = 58/268 (21%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--------SHSYQE-----------SYERLEF 45 R+ LE + Y F + SLL +A TH S S++ + Y+RLEF Sbjct: 1890 RFDELESSLNYTFKDPSLLIQAFTHPSYHQLRVLSTSNNLSDQSNLMFSTDLDCYQRLEF 1949 Query: 46 LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD--- 102 LGD +L +I+ L+ G L+ ++LV+ + +A + L + R SS Sbjct: 1950 LGDAVLDYVITRFLYEDSKQHSPGVLTDLRSALVNNNIFAALAVRIGLHKYFRASSPQLL 2009 Query: 103 ------LRKDVCSFM--------------------TSIQADVVESLIAALYLDGGI--EV 134 +RK + +D+ ESL A++LD + Sbjct: 2010 HTIDVFVRKSNNANNTIPTNTGHLTTNRLSDDVEIPKALSDIFESLAGAIFLDSNFSLDT 2069 Query: 135 AGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 K+R + + + +L E PE R+ D R +V Sbjct: 2070 VWQIFYPIMKERIERYTACIPKSPVRQLLEL-------EPEGTKFERARRMVDGRISVCA 2122 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + G G+ + R A+ +AA L+ Sbjct: 2123 HVLGKGRFYGVGRNYRLAKSLAAKRALR 2150 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALT S S+ + + ER+E +GD L +++ L+ + A EG+LS + +V Sbjct: 1639 QALT-MSCSNDFI-NLERMETIGDSFLKFVVTVHLYLTYPEAHEGKLSHLRSRIVCNSNL 1696 Query: 85 SQVARELDLAS 95 ++ + DL + Sbjct: 1697 YRLGKAKDLQN 1707 >gi|224101241|ref|XP_002312197.1| dicer-like protein [Populus trichocarpa] gi|222852017|gb|EEE89564.1| dicer-like protein [Populus trichocarpa] Length = 1468 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 33/247 (13%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62 + LE + Y+F + SLL +ALTH S Y+RLEFLGD +L LI+ ++ Sbjct: 1214 VNVRYLESLLNYSFNDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITLHMYKE 1273 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSI------- 114 + G L+ ++ V+ + + A ++ L I S DL K + + + I Sbjct: 1274 YPGMSPGLLTDLRSASVNNDCYALSAVKVGLDRHILHASHDLHKHIVATVKKIQEFSLES 1333 Query: 115 -------------QADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159 DV+ESL A+ +D G EV + + + R Sbjct: 1334 TFGWESETAFPKVLGDVIESLAGAILVDSGYNKEVVFESIRPLLEP-LITPETLRLQPVR 1392 Query: 160 ELQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAA 216 EL E + +YK + R+G + T+ VE +GL K A+++A+ Sbjct: 1393 ELNELCQRQHF---DYKKPIVSRNGR--NASVTIEVEANGLIFKHTATVADKTTAKKLAS 1447 Query: 217 AEVLKRE 223 EVLK Sbjct: 1448 KEVLKAL 1454 Score = 55.9 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 64/181 (35%), Gaps = 40/181 (22%) Query: 25 KALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +A+T ++ QE++ E LE LGD L S LF + + EG LS + + ++S Sbjct: 1048 EAIT----TNKCQENFNLESLETLGDSFLKYAASQQLFKIYQNHHEGLLSFKKDKIISNA 1103 Query: 83 TCSQVARELDLASFIR---------------VSSD----LRKDVCSF---------MTSI 114 + L FIR + SD + Sbjct: 1104 ALCRRGCNHKLQGFIRNESFDPKLWIIPGGKLGSDFLSEEPLSKGRKIYIRGRRKVKSKT 1163 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 ADVVE+LI A YL G EV + +K + +Q A+ V Sbjct: 1164 IADVVEALIGA-YLSTGGEVTALLFMDWIG---IKVDFMNTPYERHIQ--LQAEKFVNVR 1217 Query: 175 Y 175 Y Sbjct: 1218 Y 1218 >gi|283131646|dbj|BAI63215.1| Dicer [Hemicentrotus pulcherrimus] Length = 1816 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 57/258 (22%), Positives = 103/258 (39%), Gaps = 49/258 (18%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y EK I Y F +R+ L +A THSS +S + Y+RLEFLGD +L LI+ L++H Sbjct: 1562 YDGFEKTINYRFKDRAYLLQAFTHSSYHRNSITDCYQRLEFLGDALLDYLITRHLYDHHT 1621 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------------------- 98 + G L+ ++LV+ + +A + + + + Sbjct: 1622 NLSPGALTDLRSALVNNTIFASLAVKFNFHKYFKAYTANMFQVIDNFVTFVDAKNEALGM 1681 Query: 99 --------VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALK 149 + + + + D+ ES+ A+YLD G+ + + V ++ ++ Sbjct: 1682 DSQLKYSEMDGEQEESEDIEVPKALGDIFESVAGAIYLDSGMSLNAVWKVYYPMMKQQIE 1741 Query: 150 --SGKFRRDAKTELQEW--AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + EL E A+FG PE + ++ V V + G +G+ Sbjct: 1742 QYASDLPISPVRELLEMEPETARFGP-PEKTIDGKT--------RVTVNVVGKGQFKGIG 1792 Query: 206 CSKRAAEQVAAAEVLKRE 223 + A+ AA L+ Sbjct: 1793 RNYHIAKATAARFALRHL 1810 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +++ ++LT S+ S + + ERLE LGD L ++ L+ + EG+LS + V Sbjct: 1256 PTIILQSLTMSNSSDGF--NLERLEMLGDSFLKQAVTAYLYCTYPHLDEGKLSFLRSKQV 1313 Query: 80 SAETCSQVARELDLASFIRVS 100 S + + LA ++VS Sbjct: 1314 SNFNLYCLGEKKALAHKMQVS 1334 >gi|255547506|ref|XP_002514810.1| ATP binding protein, putative [Ricinus communis] gi|223545861|gb|EEF47364.1| ATP binding protein, putative [Ricinus communis] Length = 1388 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 63/251 (25%), Positives = 105/251 (41%), Gaps = 32/251 (12%) Query: 1 MSALRY---STLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLIS 56 M+ +Y LE + Y+F + LL +ALTH S Y+RLEFLGD +L LI+ Sbjct: 1135 MNPEKYVNICHLESLLKYSFRDPCLLVEALTHGSYMLPEIPRCYQRLEFLGDSVLDYLIT 1194 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM---- 111 L+ + G L+ ++ V+ + +Q A L +I S L KD+ S + Sbjct: 1195 VHLYEKYPGMSPGLLTDMRSASVNNDCYAQSAVREGLHKYILHASQKLHKDIVSTVANCK 1254 Query: 112 ----------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKF 153 + DV+ESL A+++D G EV + + + Sbjct: 1255 EFSSESTFGWESEISFPKVLGDVIESLAGAIFVDSGYNKEVVFNSIRPLLEP-LITPETI 1313 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAE 212 R EL E + + V+ +G TV VE +G+ + ++ A+ Sbjct: 1314 RLHPTRELTELCQKQHFDRRKPVVSRNNGMS---CVTVEVEANGVVFKHTSAAAERKTAK 1370 Query: 213 QVAAAEVLKRE 223 ++A+ EVL+ Sbjct: 1371 RLASKEVLRAL 1381 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 29/135 (21%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98 E LE LGD L + LF + + EG LS++ + L+S T ++ + + FIR Sbjct: 989 ESLETLGDSFLKYAVGQQLFKTYQNHHEGLLSIKKDKLISNATLCRLGCDSKIPGFIRNE 1048 Query: 99 -----------------------VSSDLRKDVCSFM---TSIQADVVESLIAALYLDGGI 132 +S+ + + + ADVVE+LI A YL G Sbjct: 1049 SFDPKNWLIPDEISGCYSLSEEILSNGRKMYIKRRRKLKEKMIADVVEALIGA-YLSTGG 1107 Query: 133 EVAGTFVDKYWKQRA 147 E+AG + +A Sbjct: 1108 EIAGLLFLDWIGIKA 1122 >gi|168177328|pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 15 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLITKHLYEDPR 74 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110 G L+ ++LV+ + +A + D + + VS +L + F Sbjct: 75 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEXQGX 134 Query: 111 ------------------MTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALK- 149 + D+ ESL A+Y D G +EV + K Sbjct: 135 DSELRRSEEDEEKEEDIEVPKAXGDIFESLAGAIYXDSGXSLEVVWQVYYPXXQPLIEKF 194 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 195 SANVPRSPVRELLEXEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 247 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 248 IAKSAAARRALR 259 >gi|6714410|gb|AAF26098.1|AC012328_1 unknown protein [Arabidopsis thaliana] Length = 2042 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 34/243 (13%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62 + +E + Y+F ++SLL +ALTH S Y+RLEFLGD +L LI+ L++ Sbjct: 1801 VNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDK 1860 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM---------- 111 + G L+ ++ V+ E + VA + +L I S L K + + Sbjct: 1861 YPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQS 1920 Query: 112 ----------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159 + DV+ESL A+++D G EV + + + Sbjct: 1921 TFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLG-CMITPETVKLHPVR 1979 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAE 218 EL E +++++ D FTV V+ ++ A K+ A+++A E Sbjct: 1980 ELTELCQKW-----QFELSKAKDFD---SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 2031 Query: 219 VLK 221 VL Sbjct: 2032 VLN 2034 Score = 44.3 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 51/144 (35%), Gaps = 28/144 (19%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 E LE LGD L + LF H + EG LS + + ++S Q + L FIR Sbjct: 1649 ESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDE 1708 Query: 101 SDLRK----------------------------DVCSFMTSIQADVVESLIAALYLDGGI 132 K + ADVVESLI A +GG Sbjct: 1709 CFEPKGWMVPGQSSAAYSLVNDTLPESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGE 1768 Query: 133 EVAGTFVDKYWKQRALKSGKFRRD 156 A F++ + + K +RD Sbjct: 1769 LAALMFMNWVGIKVDFTTTKIQRD 1792 >gi|72059370|ref|XP_790894.1| PREDICTED: similar to Dicer protein [Strongylocentrotus purpuratus] gi|115954873|ref|XP_001197815.1| PREDICTED: similar to Dicer protein [Strongylocentrotus purpuratus] Length = 1850 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 57/258 (22%), Positives = 103/258 (39%), Gaps = 49/258 (18%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y EK I Y F +R+ L +A THSS +S + Y+RLEFLGD +L LI+ L++H Sbjct: 1596 YDGFEKTINYRFRDRAYLLQAFTHSSYHRNSITDCYQRLEFLGDALLDYLITRHLYDHHT 1655 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------------------- 98 + G L+ ++LV+ + +A + + + + Sbjct: 1656 NLSPGALTDLRSALVNNTIFASLAVKFNFHKYFKAYTANMFQVIDNFVTFVDAKNEALGM 1715 Query: 99 --------VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALK 149 + + + + D+ ES+ A+YLD G+ + + V ++ ++ Sbjct: 1716 DSQLKYSEMDGEQEESEDIEVPKALGDIFESVAGAIYLDSGMSLNAVWKVYYPMMKQQIE 1775 Query: 150 --SGKFRRDAKTELQEW--AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + EL E A+FG PE + ++ V V + G +G+ Sbjct: 1776 QYASDLPISPVRELLEMEPETARFGP-PEKTIDGKT--------RVTVNVVGKGQFKGIG 1826 Query: 206 CSKRAAEQVAAAEVLKRE 223 + A+ AA L+ Sbjct: 1827 RNYHIAKATAARFALRHL 1844 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +++ ++LT S+ S + + ERLE LGD L ++ L+ + EG+LS + V Sbjct: 1290 PTIILQSLTMSNSSDGF--NLERLEMLGDSFLKQAVTAYLYCTYPHLDEGKLSFLRSKQV 1347 Query: 80 SAETCSQVARELDLASFIRVS 100 S + + LA ++VS Sbjct: 1348 SNFNLYCLGDKKALAHKMQVS 1368 >gi|146423032|ref|XP_001487449.1| hypothetical protein PGUG_00826 [Meyerozyma guilliermondii ATCC 6260] Length = 525 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 21/230 (9%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L + H S ++S ERLEFLGD IL +++ ++F F +A Sbjct: 170 TIKDPELAARVFVHKSTTNSKSYLAMSELINSHNERLEFLGDSILNNVVTLIIFEQFPTA 229 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS L++ ++ + ++ + + D+ + I AD+ E+ I AL Sbjct: 230 SEGELSRIRALLINNAFLTEFSLAYGFDKKLKSNINEE-DLRNGKQKIYADLFEAYIGAL 288 Query: 127 YLDGGIEVA--GTFVDKYWKQR-------ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +D ++ ++ K K + + +DAK EL + P+Y+V Sbjct: 289 IIDRKYDITEIKAWLKKLMKDKLGSIARDMKGIKEVNKDAKAELYSLI-GTAALHPQYEV 347 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 G + +F + ++G G S + A AA L + + T Sbjct: 348 I-VEGDGSEKQFEIACTMNGEILGVGRAPSHKEAGLRAAMHALTNKPVLT 396 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 58/167 (34%), Gaps = 30/167 (17%) Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S KE L ++L + ++ R +R ++D V S +++ VE+ Sbjct: 375 PSHKEAGLRAAMHALTNKPVLTKYGR-------LRSNTDRSVSVISSTRRLESPKVEARF 427 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV--TPEYKVTFRS 181 L VD+ + + S DA+ +L G P+Y+V Sbjct: 428 NKL----------DIVDRQFPLVSDGSEVVDADARNQLYAIVTKNLGPDEIPQYQVEEID 477 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA------AEVLKR 222 G F + I G + +D SK+ A A L+R Sbjct: 478 G-----SFKARLSIRGRTLSTAVDVSKKKALNRCATLLLRNRAALER 519 >gi|86143647|ref|ZP_01062023.1| putative ribonuclease III [Leeuwenhoekiella blandensis MED217] gi|85829690|gb|EAQ48152.1| putative ribonuclease III [Leeuwenhoekiella blandensis MED217] Length = 248 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 98/209 (46%), Gaps = 12/209 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + T++K IG+ N + E+A TH S++ ++ +YERLEFLGD +LG +I+ LF+ Sbjct: 19 FVTVKKIIGFKPINITHYEEAFTHRSMALQDKKGNAFNYERLEFLGDAMLGAVIAAYLFD 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG L+ + +VS E +++ R+L L ++ + +I ++ E+ Sbjct: 79 EVGKGDEGYLTKMRSKVVSREHLNELGRDLGLLGLVKSAIPKENFGA----NIHGNLFEA 134 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+Y D G A F++K + K K+ L EW + ++ Sbjct: 135 LVGAIYQDRGYRYARKFINKRVIDPYVDIEKLEGRVISYKSLLIEWCQKEKR-LFDFDTY 193 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SG D F+V + I G A+ S Sbjct: 194 EDSGQDVVRHFSVRLSIDGKQVAKARATS 222 >gi|225460893|ref|XP_002278706.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 364 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 31/245 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M A +E+ I Y F N+ LLE+ALTHSS + S SY+RLEF+GD LG +S +F Sbjct: 28 MEA-SVEAVERIINYKFRNKKLLEEALTHSSYTDSA--SYQRLEFIGDAALGCALSNYVF 84 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111 + S G+LS+ + +S E ++VA + L ++R ++ D Sbjct: 85 LAYPSLDPGQLSLIRAANISTEKLARVAVRVGLYQYVRHNAAALDDKVREFALAVQEEGD 144 Query: 112 ----------TSIQADVVESLIAALYLDGGIEV-AGTFVDKYWKQRALKSGKFRR--DAK 158 AD+VES+ AA+Y+D ++ + + + + ++ Sbjct: 145 SVLYGGSVKAPKFLADIVESVAAAIYVDCNFDLQVLWVIFRGLLEPIVTHEALQQQPQPV 204 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E +R G + V + G A G K A+ AA E Sbjct: 205 TLLYELCQKDGKHVDIKH--WRKGSKN----IASVYVGGKFIASGSSDEKEIAKLNAAKE 258 Query: 219 VLKRE 223 L++ Sbjct: 259 ALQKL 263 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSK-RAAE 212 AK +L E+ K P Y++ GP H+ F V I G+ QG + + AE Sbjct: 288 AKQKLHEFCSKKKWPKPSYRIEKEVGPAHEKGFLCSVHIETVDGVLVMQGDTKPRVKDAE 347 Query: 213 QVAA 216 AA Sbjct: 348 NSAA 351 >gi|325685925|gb|EGD27990.1| ribonuclease III [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 154 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 5/154 (3%) Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +++V E S+VA + I + K ++ DV E+ AL+LD GI Sbjct: 1 RLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALLEDVFEAFNGALFLDQGI 60 Query: 133 EVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E F+ + + +G RD KT+LQE VT EY+V S P F Sbjct: 61 EAVEKFLRQTVYP-LIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVLNESQQP--PHFE 117 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V V + G A G +K+ AEQ AA+ L+ Sbjct: 118 VEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 151 >gi|320580371|gb|EFW94594.1| ribonuclease III, putative [Pichia angusta DL-1] Length = 347 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 88/225 (39%), Gaps = 20/225 (8%) Query: 16 AFANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLLFNHFDSA 66 + + + TH S + + + ERLEFLGD I+ L++ +LF + S Sbjct: 28 KIEDPVIEARVFTHRSAVSNTKHLSKKEILESNNERLEFLGDSIINNLVTQILFERYPSF 87 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS+ + L+S + + + + + V+ I +DV E+ + L Sbjct: 88 DEGELSILRSQLISNSSLGEFSEKYGFPEKLVVNFAKDAAFQKGKHKIYSDVFEAYVGGL 147 Query: 127 YLDGGI---EVAGTFVDKYWKQRA------LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 Y+D + ++++ R DAK +L + P Y + Sbjct: 148 YVDSNYSNLDTIKKWLEQLITPRLSKLTERFNLKNLNNDAKAQLYALI-GSAALPPRY-I 205 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 T ++G D F V I +G + + A AA + L + Sbjct: 206 TKQTGNGFDVSFIVQCMIGDEIIGEGEGSNLKQAGLRAAEDALSK 250 >gi|158706456|sp|Q1DKI1|DCL1_COCIM RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease DCL1; Includes: RecName: Full=ATP-dependent helicase DCL1 Length = 1464 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 101/254 (39%), Gaps = 40/254 (15%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++K++GY F LL A TH S + + Y+RLEFLGD +L + +++ Sbjct: 1188 AQVKKKLGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1247 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSI--------- 114 L+ ++VS + VA L L S + S+ L+ + +++ I Sbjct: 1248 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1307 Query: 115 --------------QADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154 D+VE+ I A+++D G E F+ K+++ + Sbjct: 1308 PPDAWTLTSDPPKCLPDMVEAYIGAIFIDSGFSFEVVEEFFQKFLKKHFEDMTIYDTYAN 1367 Query: 155 RDAKTELQEWAHAKFGVTPEY-----KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + T L FG + Y +V + GP R V + A+G+ S R Sbjct: 1368 KHPTTYLHNRLAIDFGCS-NYCLKAGEVPYVDGPG--TRVLAAVIVHDEVVAEGVASSSR 1424 Query: 210 AAEQVAAAEVLKRE 223 A+ A+ L + Sbjct: 1425 YAKLKASEAALSKL 1438 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 39/121 (32%), Gaps = 27/121 (22%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT H + ++YERLEFLGD L + S LF Sbjct: 1028 PELALEALTKDSDNTDEHRAQQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1087 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 E T Q S ++ + ADV E+LI A Sbjct: 1088 E------RGWYPGGLTLLQ-----GKGQ----SKGATENKHALADKTIADVCEALIGACC 1132 Query: 128 L 128 L Sbjct: 1133 L 1133 >gi|302764440|ref|XP_002965641.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii] gi|300166455|gb|EFJ33061.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii] Length = 524 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 101/248 (40%), Gaps = 32/248 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLL 59 ++++ + LE +GY+F +R+LL +ALTHSS S YERLEF+GD +L L++ + Sbjct: 190 LNSIDFEGLENTLGYSFRSRNLLAQALTHSSSRQASMVPIYERLEFIGDAVLDHLLTRHI 249 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD------------- 106 + + G L+ + +++E+ ++ + L + I S+ Sbjct: 250 YFSYKDLHPGRLTDLRCAALNSESFARAMVKHKLHAHILHESNDFHSQIKTYAKHALNME 309 Query: 107 ---------VCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 + DV +SL+ A+Y+D G+ + + V + Q + Sbjct: 310 ENAIYSYGFGAVKAPKVLGDVFQSLVGAVYIDSGLNLDQVWKVFEPLLQPLVTPEAVPIH 369 Query: 157 AKTELQEWAHAKFGVTP-EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 EL E +Y ++ F + +G + K+ A+++A Sbjct: 370 PVRELYELCDKHLKKLEWDYSLSGD-------LFLARALVGNKVLGRGTNVQKKMAKKLA 422 Query: 216 AAEVLKRE 223 A + + Sbjct: 423 AINAIAKL 430 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 12/145 (8%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLL 59 M A++ L K I Y +L +ALT ++ ++ YER+E LGD L +ST L Sbjct: 26 MQAIQ---LRKAINYNIPASKIL-EALT---AANCHEPYCYERIELLGDAYLKWAVSTRL 78 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFMTSIQ 115 + F EGEL++ ++S +A E L +++R++ D+ + + Sbjct: 79 YLKFSDFPEGELTITRGKIISNSALHYLALEKGLETYVRINPFVPGREPTDLQELSSKVL 138 Query: 116 ADVVESLIAALYLDGGIEVAGTFVD 140 A+VVE+LI A Y+ G + A V+ Sbjct: 139 ANVVEALIGAYYVHHGDKGARHVVE 163 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 8/71 (11%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI----SGLAPAQGMDC-SKRAAEQV 214 L E + P+Y +GP H FT + G + A+ Sbjct: 453 ALHELCSQRGWPCPDYNTHSETGPAHAKMFTCTASVRIEQGEKQECIGQPRPTINKAKDS 512 Query: 215 AAA---EVLKR 222 AA E L++ Sbjct: 513 AARVLMETLQK 523 >gi|189908862|gb|ACE60552.1| dicer-like protein 2 [Brassica rapa] Length = 1392 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 103/245 (42%), Gaps = 33/245 (13%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62 + +E + Y F ++SLL +ALTH S Y+RLEFLGD +L LI+ L+ Sbjct: 1146 VNVRYMESLLNYKFKDKSLLVEALTHGSYMIPEIPRCYQRLEFLGDSVLDYLITKHLYGE 1205 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM---------- 111 + + G L+ ++ V+ E +QVA + +L + S DL K + + Sbjct: 1206 YPNLSPGLLTDMRSASVNNECYAQVAVKSNLHKHVLHASHDLHKHISRTVSEFERLSSVQ 1265 Query: 112 -----------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAK 158 + DV+ESL A+++D G EV + + + Sbjct: 1266 SSFGWESEIAFPKVLGDVIESLAGAIHVDSGYNKEVVFACIKPLLG-CMITPETVKLHPV 1324 Query: 159 TELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAA 216 EL E +++++ G + + F V VE ++ A K+ A+++A Sbjct: 1325 RELTELCQKA-----QFELSKVKGFENGEAFFPVEVEAKEMSFAHTARAFDKKMAKKLAY 1379 Query: 217 AEVLK 221 EVL Sbjct: 1380 KEVLN 1384 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 58/164 (35%), Gaps = 36/164 (21%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98 E LE LGD L + LF +D+ EG LS + ++S T + L FIR Sbjct: 994 ESLETLGDSFLKYAVCQHLFQSYDTHHEGLLSTIKDEMISNVTLCKFGCNQKLQGFIRNE 1053 Query: 99 -----------------------VSSDLRKDVCSF----MTSIQADVVESLIAALYLDGG 131 +S + S+ ADVVE+LI A +GG Sbjct: 1054 CFEPKGWMVPGQSSAAYALVNDYLSESRNMYIARRMNLKRKSV-ADVVEALIGAYLSEGG 1112 Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 A TF++ + + +R+ A+ V Y Sbjct: 1113 ELAALTFMNWVGIKVDFTTTMIQREP------SIQAEKLVNVRY 1150 >gi|73953910|ref|XP_868231.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 3 [Canis familiaris] Length = 1282 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 57/181 (31%), Positives = 93/181 (51%), Gaps = 10/181 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1103 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1162 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + +++D K + T AD++ES Sbjct: 1163 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1221 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + + D K++LQ+ K P Y Sbjct: 1222 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1281 Query: 176 K 176 K Sbjct: 1282 K 1282 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 954 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1013 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 1014 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1060 >gi|297832974|ref|XP_002884369.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp. lyrata] gi|297330209|gb|EFH60628.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp. lyrata] Length = 2033 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 34/243 (13%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62 + +E + Y+F ++SLL +ALTH S Y+RLEFLGD +L LI+ L++ Sbjct: 1792 VNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDK 1851 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------ 110 + G L+ ++ V+ E + VA + +L I +S + S Sbjct: 1852 YPCLSPGLLTDMRSASVNNECYALVAVKENLHKHILHASHVLHKHISRTVSEFEQSSLQS 1911 Query: 111 ---------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159 + DV+ESL A+++D G EV + + + Sbjct: 1912 TFGWECDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLG-CMITPETVKLHPVR 1970 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAE 218 EL E +++++ ++ FTV V+ ++ A K+ A+++A E Sbjct: 1971 ELTELCQKS-----QFELSKAKDFNY---FTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 2022 Query: 219 VLK 221 VL Sbjct: 2023 VLN 2025 Score = 42.8 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 27/58 (46%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 E LE LGD L + LF H + EG LS + + ++S Q + L FIR Sbjct: 1640 ESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIR 1697 >gi|119174400|ref|XP_001239561.1| hypothetical protein CIMG_09182 [Coccidioides immitis RS] Length = 1357 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 101/254 (39%), Gaps = 40/254 (15%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++K++GY F LL A TH S + + Y+RLEFLGD +L + +++ Sbjct: 1081 AQVKKKLGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1140 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSI--------- 114 L+ ++VS + VA L L S + S+ L+ + +++ I Sbjct: 1141 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1200 Query: 115 --------------QADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154 D+VE+ I A+++D G E F+ K+++ + Sbjct: 1201 PPDAWTLTSDPPKCLPDMVEAYIGAIFIDSGFSFEVVEEFFQKFLKKHFEDMTIYDTYAN 1260 Query: 155 RDAKTELQEWAHAKFGVTPEY-----KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + T L FG + Y +V + GP R V + A+G+ S R Sbjct: 1261 KHPTTYLHNRLAIDFGCS-NYCLKAGEVPYVDGPG--TRVLAAVIVHDEVVAEGVASSSR 1317 Query: 210 AAEQVAAAEVLKRE 223 A+ A+ L + Sbjct: 1318 YAKLKASEAALSKL 1331 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 39/121 (32%), Gaps = 27/121 (22%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT H + ++YERLEFLGD L + S LF Sbjct: 921 PELALEALTKDSDNTDEHRAQQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 980 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 E T Q S ++ + ADV E+LI A Sbjct: 981 E------RGWYPGGLTLLQ-----GKGQ----SKGATENKHALADKTIADVCEALIGACC 1025 Query: 128 L 128 L Sbjct: 1026 L 1026 >gi|297737474|emb|CBI26675.3| unnamed protein product [Vitis vinifera] Length = 337 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 31/245 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M A +E+ I Y F N+ LLE+ALTHSS + S SY+RLEF+GD LG +S +F Sbjct: 1 MEA-SVEAVERIINYKFRNKKLLEEALTHSSYTDSA--SYQRLEFIGDAALGCALSNYVF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111 + S G+LS+ + +S E ++VA + L ++R ++ D Sbjct: 58 LAYPSLDPGQLSLIRAANISTEKLARVAVRVGLYQYVRHNAAALDDKVREFALAVQEEGD 117 Query: 112 ----------TSIQADVVESLIAALYLDGGIEV-AGTFVDKYWKQRALKSGKFRR--DAK 158 AD+VES+ AA+Y+D ++ + + + + ++ Sbjct: 118 SVLYGGSVKAPKFLADIVESVAAAIYVDCNFDLQVLWVIFRGLLEPIVTHEALQQQPQPV 177 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E +R G + V + G A G K A+ AA E Sbjct: 178 TLLYELCQKDGKHVDIKH--WRKGSKN----IASVYVGGKFIASGSSDEKEIAKLNAAKE 231 Query: 219 VLKRE 223 L++ Sbjct: 232 ALQKL 236 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSK-RAAE 212 AK +L E+ K P Y++ GP H+ F V I G+ QG + + AE Sbjct: 261 AKQKLHEFCSKKKWPKPSYRIEKEVGPAHEKGFLCSVHIETVDGVLVMQGDTKPRVKDAE 320 Query: 213 QVAA 216 AA Sbjct: 321 NSAA 324 >gi|145338056|ref|NP_566199.4| DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding / ribonuclease III [Arabidopsis thaliana] gi|322518659|sp|Q3EBC8|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName: Full=Dicer-like protein 2; Short=AtDCL2 gi|332640403|gb|AEE73924.1| protein dicer-like 2 [Arabidopsis thaliana] gi|332640405|gb|AEE73926.1| protein dicer-like 2 [Arabidopsis thaliana] Length = 1388 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 34/243 (13%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62 + +E + Y+F ++SLL +ALTH S Y+RLEFLGD +L LI+ L++ Sbjct: 1147 VNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDK 1206 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM---------- 111 + G L+ ++ V+ E + VA + +L I S L K + + Sbjct: 1207 YPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQS 1266 Query: 112 ----------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159 + DV+ESL A+++D G EV + + + Sbjct: 1267 TFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLG-CMITPETVKLHPVR 1325 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAE 218 EL E +++++ D FTV V+ ++ A K+ A+++A E Sbjct: 1326 ELTELCQKW-----QFELSKAKDFD---SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 1377 Query: 219 VLK 221 VL Sbjct: 1378 VLN 1380 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 51/144 (35%), Gaps = 28/144 (19%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 E LE LGD L + LF H + EG LS + + ++S Q + L FIR Sbjct: 995 ESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDE 1054 Query: 101 SDLRK----------------------------DVCSFMTSIQADVVESLIAALYLDGGI 132 K + ADVVESLI A +GG Sbjct: 1055 CFEPKGWMVPGQSSAAYSLVNDTLPESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGE 1114 Query: 133 EVAGTFVDKYWKQRALKSGKFRRD 156 A F++ + + K +RD Sbjct: 1115 LAALMFMNWVGIKVDFTTTKIQRD 1138 >gi|145331748|ref|NP_001078101.1| DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding / ribonuclease III [Arabidopsis thaliana] gi|332640404|gb|AEE73925.1| protein dicer-like 2 [Arabidopsis thaliana] Length = 1374 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 34/243 (13%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62 + +E + Y+F ++SLL +ALTH S Y+RLEFLGD +L LI+ L++ Sbjct: 1133 VNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDK 1192 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM---------- 111 + G L+ ++ V+ E + VA + +L I S L K + + Sbjct: 1193 YPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQS 1252 Query: 112 ----------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159 + DV+ESL A+++D G EV + + + Sbjct: 1253 TFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLG-CMITPETVKLHPVR 1311 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAE 218 EL E +++++ D FTV V+ ++ A K+ A+++A E Sbjct: 1312 ELTELCQKW-----QFELSKAKDFD---SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 1363 Query: 219 VLK 221 VL Sbjct: 1364 VLN 1366 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 51/144 (35%), Gaps = 28/144 (19%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 E LE LGD L + LF H + EG LS + + ++S Q + L FIR Sbjct: 981 ESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDE 1040 Query: 101 SDLRK----------------------------DVCSFMTSIQADVVESLIAALYLDGGI 132 K + ADVVESLI A +GG Sbjct: 1041 CFEPKGWMVPGQSSAAYSLVNDTLPESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGE 1100 Query: 133 EVAGTFVDKYWKQRALKSGKFRRD 156 A F++ + + K +RD Sbjct: 1101 LAALMFMNWVGIKVDFTTTKIQRD 1124 >gi|94450856|gb|ABF19798.1| dicer-like 2 spliceform 2 [Arabidopsis thaliana] Length = 1374 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 34/243 (13%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62 + +E + Y+F ++SLL +ALTH S Y+RLEFLGD +L LI+ L++ Sbjct: 1133 VNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDK 1192 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM---------- 111 + G L+ ++ V+ E + VA + +L I S L K + + Sbjct: 1193 YPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQS 1252 Query: 112 ----------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159 + DV+ESL A+++D G EV + + + Sbjct: 1253 TFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLG-CMITPETVKLHPVR 1311 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAE 218 EL E +++++ D FTV V+ ++ A K+ A+++A E Sbjct: 1312 ELTELCQKW-----QFELSKAKDFD---SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 1363 Query: 219 VLK 221 VL Sbjct: 1364 VLN 1366 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 52/144 (36%), Gaps = 28/144 (19%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 E LE LGD L + LF H + EG LS + + ++S Q + L FIR Sbjct: 981 ESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDE 1040 Query: 101 SDLRK----------------------------DVCSFMTSIQADVVESLIAALYLDGGI 132 K + ADVVESLI A +GG Sbjct: 1041 CFEPKGWMVPGQSSAAYSLVNDTLPESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGE 1100 Query: 133 EVAGTFVDKYWKQRALKSGKFRRD 156 A F++ + L + K +RD Sbjct: 1101 LAALMFMNWVGIKVDLTTTKIQRD 1124 >gi|94450854|gb|ABF19797.1| dicer-like 2 spliceform 1 [Arabidopsis thaliana] Length = 1386 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 34/243 (13%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62 + +E + Y+F ++SLL +ALTH S Y+RLEFLGD +L LI+ L++ Sbjct: 1145 VNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDK 1204 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM---------- 111 + G L+ ++ V+ E + VA + +L I S L K + + Sbjct: 1205 YPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQS 1264 Query: 112 ----------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159 + DV+ESL A+++D G EV + + + Sbjct: 1265 TFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLG-CMITPETVKLHPVR 1323 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAE 218 EL E +++++ D FTV V+ ++ A K+ A+++A E Sbjct: 1324 ELTELCQKW-----QFELSKAKDFD---SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 1375 Query: 219 VLK 221 VL Sbjct: 1376 VLN 1378 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 52/144 (36%), Gaps = 28/144 (19%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 E LE LGD L + LF H + EG LS + + ++S Q + L FIR Sbjct: 993 ESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDE 1052 Query: 101 SDLRK----------------------------DVCSFMTSIQADVVESLIAALYLDGGI 132 K + ADVVESLI A +GG Sbjct: 1053 CFEPKGWMVPGQSSAAYSLVNDTLPESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGE 1112 Query: 133 EVAGTFVDKYWKQRALKSGKFRRD 156 A F++ + L + K +RD Sbjct: 1113 LAALMFMNWVGIKVDLTTTKIQRD 1136 >gi|126134051|ref|XP_001383550.1| hypothetical protein PICST_30953 [Scheffersomyces stipitis CBS 6054] gi|126095699|gb|ABN65521.1| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 566 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 21/222 (9%) Query: 18 ANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +++L E+ H S+ + ERLEFLGD +L L++ ++++ F SA E Sbjct: 209 KDQTLYERVFVHKSVVNGKTYLDQNDLINSHNERLEFLGDSVLNNLVTLIIYDKFPSASE 268 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ + L+ T +Q + E ++ +D + AD+ E+ I AL + Sbjct: 269 GKLTKMRSQLIDNHTLTQFSFEYGFDKRLKTKTDEEILKTGD-QKVYADIFEAYIGALSV 327 Query: 129 DGGIEV--AGTFVDKYWKQRALK------SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + G+++ +++K + + ++AK+EL P Y V Sbjct: 328 ERGLDLREIKDWLEKLYAPKLEAFKVNFLQESVNKEAKSELYSIV-GTASSHPLYVVVEE 386 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 HD F V + + S++ A AA + LK Sbjct: 387 GNGSHD--FVVECRMGNDVLGRAKAPSQKEAGLRAAMDALKN 426 >gi|16331355|ref|NP_442083.1| ribonuclease III [Synechocystis sp. PCC 6803] gi|2500555|sp|Q55637|RNC2_SYNY3 RecName: Full=Ribonuclease 3 2; AltName: Full=Ribonuclease III 2; Short=RNase III 2 gi|1001526|dbj|BAA10153.1| ribonuclease III [Synechocystis sp. PCC 6803] Length = 244 Score = 147 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 22/209 (10%) Query: 5 RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +R+G + +L++ ALTH+S S +++Y++LEF+GD ++ L + +L Sbjct: 10 QLKALLRRLGLTDNTPVDWNLVDLALTHAS--QSPEQNYQQLEFVGDAVVRLASAEVLMK 67 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H+ GE+S LVS T + L F+ ++ + D + S+ AD E+ Sbjct: 68 HYPQTSVGEMSALRAILVSDRTLAGWGELYGLDRFLWITPAVLADK-NGRVSLMADSFEA 126 Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 L+ ALYL G + + ++ ++ +A ++ + K LQ W A + PEY+V Sbjct: 127 LLGALYLSVGDLSLIRPWLSEHLLAKATEIRQDPALHNYKEALQAWTQAHYKCLPEYRVE 186 Query: 179 -------FRSGPDHDPRFTVVVEISGLAP 200 +SG F V + Sbjct: 187 PLDQNLPQQSG------FQATVWLGDQPL 209 >gi|120437705|ref|YP_863391.1| ribonuclease III [Gramella forsetii KT0803] gi|117579855|emb|CAL68324.1| ribonuclease III [Gramella forsetii KT0803] Length = 243 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 95/208 (45%), Gaps = 12/208 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 ++ L + +G+ + +KA TH S++ ++ ++ER+EFLGD +L ++++ LF Sbjct: 19 FNILTQILGFKPKSILHYKKAFTHRSLNRRDEDGNAINFERMEFLGDAMLSAVVASHLFK 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG L+ + +VS + +++ ++L L ++ + + +I ++ E+ Sbjct: 79 AVPGGNEGYLTKMRSKVVSRKHLNELGKDLGLIEHVQTNIPKDQFG----VNIHGNLFEA 134 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G + F+ + + + K+ + EW + ++ V Sbjct: 135 LVGAIYLDRGYKHCKRFIYERVINPYVDIEQLEGKVISYKSLVIEWCQKEKKE-FDFNVY 193 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDC 206 +G D F V + I G A+ Sbjct: 194 EDTGNDELKHFAVKLRIGGRVVAKARAT 221 >gi|113474882|ref|YP_720943.1| RNAse III [Trichodesmium erythraeum IMS101] gi|110165930|gb|ABG50470.1| RNAse III [Trichodesmium erythraeum IMS101] Length = 250 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 7/191 (3%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +LL+ ALTHS++S ++ + E+LEF GD ++ L+ + LL ++ + GE + + LVS Sbjct: 30 NLLDLALTHSTVSSTH--NNEKLEFFGDAVVRLVAAQLLLENYPNCSVGEFTAIRSILVS 87 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFV 139 + +Q+A + + ++ VS D AD E+++ ALYL +E+ ++ Sbjct: 88 DRSLAQIADKYGWSRYLLVSKSAAGDKV-GRERRLADSFEAVLGALYLSTNNLELIRPWL 146 Query: 140 DKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEIS 196 D ++++ ++ K LQE + P Y+ + D RF V Sbjct: 147 DSHFERLIAEIRKDPACHSYKAALQELTQGYYKTLPNYQAHEVNKIYGDRERFFAEVWFK 206 Query: 197 GLAPAQGMDCS 207 G G S Sbjct: 207 GQKLGVGKGPS 217 >gi|260831340|ref|XP_002610617.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae] gi|229295984|gb|EEN66627.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae] Length = 1760 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 43/243 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E+ + Y+F +++ + +A TH S ++ + Y+RLEFLGD +L LI+ LF Sbjct: 1509 YQQFEETVQYSFNDKAYMLQAFTHPSYHYNTITDCYQRLEFLGDAVLDYLITNHLFKDPQ 1568 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF-------------- 110 G L+ ++LV+ + +A + D +++ S ++ S Sbjct: 1569 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYLKFVSPELFNIISNFVQFQQEQGEEQGM 1628 Query: 111 ------------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 + DV ES+ A+YLD G+ E + K K Sbjct: 1629 DSQTYINDEGEEESEDIEVPKALGDVFESVAGAIYLDSGMSLETVWRVYYRMMKPLIDKF 1688 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S K R EL E +P + +D + V V + G +G+ + R Sbjct: 1689 SAKVPRSPVRELLEMEPETAKFSPSERT-------YDGKVRVTVTVIGKGQFKGVGRNYR 1741 Query: 210 AAE 212 A+ Sbjct: 1742 IAK 1744 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 SL+ +ALT S+ + + ERLE +GD L I+T L+ + EG+LS + V Sbjct: 1230 PSLILQALTLSNAGDFF--NLERLETIGDSFLKHAITTFLYCTYSRVHEGKLSYMRSRQV 1287 Query: 80 SAETCSQVARELDLAS 95 S ++ + LAS Sbjct: 1288 SNLNLYRLGKRKGLAS 1303 >gi|302815180|ref|XP_002989272.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii] gi|300143015|gb|EFJ09710.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii] Length = 524 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 101/248 (40%), Gaps = 32/248 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLL 59 ++++ + LE +GY+F +R+LL +ALTHSS S YERLEF+GD +L L++ + Sbjct: 190 LNSIDFEGLENTLGYSFGSRNLLAQALTHSSSRQASMVPIYERLEFIGDAVLDHLLTRHI 249 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD------------- 106 + + G L+ + +++E+ ++ + L + I S+ Sbjct: 250 YFSYKDLHPGRLTDLRCAALNSESFARAMVKHKLHAHILHESNDFHSQIKTYAKHALNME 309 Query: 107 ---------VCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 + DV +SL+ ALY+D G+ + + V + Q + Sbjct: 310 ENAIYSYGFGAVKAPKVLGDVFQSLVGALYIDSGLNLDQVWKVFEPLLQPLVTPEAVPIH 369 Query: 157 AKTELQEWAHAKFGVTP-EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 EL E +Y ++ F + +G + K+ A+++A Sbjct: 370 PVRELYELCDKHMKKLEWDYSLSGD-------LFLARALVGNKVLGRGTNVQKKMAKKLA 422 Query: 216 AAEVLKRE 223 A + + Sbjct: 423 AINAIAKL 430 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 12/145 (8%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLL 59 M A++ L K I Y +L +ALT ++ ++ YER+E LGD L +ST L Sbjct: 26 MQAIQ---LRKAINYNIPASKIL-EALT---AANCHEPYCYERIELLGDAYLKWAVSTRL 78 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFMTSIQ 115 + F EGEL++ ++S +A E L +++R++ D+ + + Sbjct: 79 YLKFSDFPEGELTITRGKIISNSALHYLALEKGLETYVRINPFVPGREPTDLQELSSKVL 138 Query: 116 ADVVESLIAALYLDGGIEVAGTFVD 140 A+VVE+LI A Y+ G + A V+ Sbjct: 139 ANVVEALIGAYYVHHGDKGARHVVE 163 Score = 43.9 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 5/67 (7%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI----SGLAPAQGMDC-SKRAAEQV 214 L E + P+Y +GP H FT + G + A+ Sbjct: 453 ALHELCSQRGWPCPDYNTHSETGPAHAKMFTCTASVRIEQGEKQECIGQPRPTINKAKDS 512 Query: 215 AAAEVLK 221 AA +++ Sbjct: 513 AARMLME 519 >gi|270001216|gb|EEZ97663.1| hypothetical protein TcasGA2_TC016208 [Tribolium castaneum] Length = 1063 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 8/165 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E+ +G F + LL +A T S ++ S +RLEFLGD +L L+ S L+ + Sbjct: 867 NLTKFEESVGLQFNHIRLLARAFTDRSVGYTNLTLGSNQRLEFLGDTVLQLIASEYLYKY 926 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L ++++ ++ T +AD++E+ Sbjct: 927 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMSNYAVYNNP----KAELKTKDRADLLEAF 982 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA 165 I ALY+D G+E F R + D K++LQ+ Sbjct: 983 IGALYVDQGLEFCEVFCQVTLFPRLQDFIMNQDWNDPKSKLQQCC 1027 Score = 95.5 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ERLEFLGD ++ L S LF F +EG L+ ++V + + +A+ L L F+ Sbjct: 724 HNERLEFLGDAVVEFLSSIHLFYTFPDLEEGGLATYRAAIVQNQHLAVLAKTLKLDQFML 783 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-A 157 + + A+ E+L+ AL+LDGGI V + + + + Sbjct: 784 YAHGSDLCHDLELRHAMANCFEALMGALFLDGGINVVDRVFSETLFKVNPDLLEVWMNLP 843 Query: 158 KTELQE 163 LQE Sbjct: 844 PHPLQE 849 >gi|303314275|ref|XP_003067146.1| Type III restriction enzyme, res subunit family protein [Coccidioides posadasii C735 delta SOWgp] gi|240106814|gb|EER25001.1| Type III restriction enzyme, res subunit family protein [Coccidioides posadasii C735 delta SOWgp] Length = 1487 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 55/254 (21%), Positives = 99/254 (38%), Gaps = 40/254 (15%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++K++GY F LL A TH S + + Y+RLEFLGD +L + +++ Sbjct: 1211 AQVKKKLGYVFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1270 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSI--------- 114 L+ ++VS + VA L L S + S+ L+ + +++ I Sbjct: 1271 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1330 Query: 115 --------------QADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154 D+VE+ I A+++D E F+ K+++ + Sbjct: 1331 SPDAWTLTSDPPKCLPDMVEAYIGAIFIDSNFSFEVVEEFFQKFLKKHFEDMTIYDTYAN 1390 Query: 155 RDAKTELQEWAHAKFGVTPEY-----KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + T L FG + Y +V + GP R V + +G+ S R Sbjct: 1391 KHPTTYLHNRLAIDFGCS-NYCLKAGEVPYVDGPG--TRVLAAVIVHDEVVTEGVASSSR 1447 Query: 210 AAEQVAAAEVLKRE 223 A+ A+ L + Sbjct: 1448 YAKLKASEAALSKL 1461 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 49/142 (34%), Gaps = 33/142 (23%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT H + ++YERLEFLGD L + S LF Sbjct: 1015 PELALEALTKDSDNTDEHRAQQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1074 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRV---------------------SSDLRKD 106 E + V+ LV + + A L FIR S ++ Sbjct: 1075 EYDFHVKRMCLVCNQNLFKTAVRFKLYEFIRSQSFSRRGWYPEGLTLLQGKGQSKGATEN 1134 Query: 107 VCSFMTSIQADVVESLIAALYL 128 + ADV E+LI A L Sbjct: 1135 KHALADKTIADVCEALIGACCL 1156 >gi|158300291|ref|XP_320248.4| AGAP012289-PA [Anopheles gambiae str. PEST] gi|157013088|gb|EAA00264.4| AGAP012289-PA [Anopheles gambiae str. PEST] Length = 1672 Score = 145 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 62/264 (23%), Positives = 103/264 (39%), Gaps = 65/264 (24%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E +GY F NR+ L +A TH+S S+S SY++LEFLGD +L L+S ++ S Sbjct: 1424 ERIEATLGYRFRNRTYLLQAFTHTSYTSNSLTGSYQQLEFLGDAVLDFLVSMYIYERNPS 1483 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIR---------VSSDLRKDVCSFM----- 111 G+L+ ++LV+ + V +L I + + C Sbjct: 1484 MSPGQLTDLRSALVNNVNLACVLVRNELHRHILSQSPMLTDAIGKFVAVHRCHRNQGSNW 1543 Query: 112 ------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 + DV+E+LI A+YLD G ++A T+ + ++ + F Sbjct: 1544 VRLLTEESDTPMAEYVDVPKVLGDVLEALIGAIYLDSGNDLAATW-EVCFRLLRDEIADF 1602 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFR--SGPDHDPRFTV------VVEIS-------GL 198 R KT +Q V + P+ P F+ VV + Sbjct: 1603 TR--KTPIQ--------------VVRQLYEHPEASPHFSAPFVEEEVVYVKLSYTHRSQR 1646 Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222 G +K A++ AA L + Sbjct: 1647 QTVYGFGKNKDDAKRAAAKIALSK 1670 Score = 55.9 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 2/76 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +ALT S + + + ER E LGD L +S + S EG L+ +VS Sbjct: 1199 LLQALTTKSSADVF--NLERFEVLGDAFLKFAVSVYILFRHTSWHEGYLTTCKGRMVSNR 1256 Query: 83 TCSQVARELDLASFIR 98 A L I+ Sbjct: 1257 NLLYCAMGYGLPGKIK 1272 >gi|255524265|ref|ZP_05391224.1| Ribonuclease III [Clostridium carboxidivorans P7] gi|255512090|gb|EET88371.1| Ribonuclease III [Clostridium carboxidivorans P7] Length = 152 Score = 145 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 2/144 (1%) Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 + ++A++ DL +IR+S SI AD VE++IAA+Y+D G E A FV Sbjct: 2 CENSLYEIAKKWDLGKYIRMSKGEELTGGRERVSILADCVEAIIAAIYIDAGFEKAKGFV 61 Query: 140 DKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 +K K+ K D KT+LQE V +Y + GP H +F V ++ Sbjct: 62 LTNFKDTIEKAIKNKIILDYKTKLQEVMQKNGDVDIQYDLMKYEGPPHRRKFYTQVSVNN 121 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221 G SK+ +EQ AA + LK Sbjct: 122 KVLGNGTGYSKKESEQSAAKKALK 145 >gi|41469333|gb|AAS07189.1| putative ribonuclease III, 5'-partial (with alternative splicing) [Oryza sativa Japonica Group] Length = 1017 Score = 145 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 90/243 (37%), Gaps = 30/243 (12%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +LE +GY F + LL +ALTH S + Y+RLEFLGD IL L + ++ Sbjct: 766 INVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSK 825 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------ 110 + L+ ++ V+ + A + L I SS S+ Sbjct: 826 YPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGP 885 Query: 111 ---------MTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKT 159 + + DV+ES+ A+YLD EV + + + A D Sbjct: 886 SYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLA-TPETIEPDPVK 944 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 LQE+ + Y+ G V+ A K A+++A+ Sbjct: 945 GLQEFCDRRSFK-ITYEKNHVDGVS---SVIARVKAGETTYSATKSGPCKLVAKKLASKA 1000 Query: 219 VLK 221 VLK Sbjct: 1001 VLK 1003 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 30/146 (20%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALT + S E LE LGD L + + LF+ + EG L+ +L+S Sbjct: 599 EALTTKKCQEEF--SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAAL 656 Query: 85 SQVARELDLASFIR-------------VSSDLRKDV-----------CSFMTSIQ----A 116 Q+A +L +I + D R + SI+ A Sbjct: 657 CQLACSSNLVGYIHAEEFNPRDWIIPCLDYDERDNKKISFLAPNGMYSQRKMSIKSKRIA 716 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKY 142 D VE+LI A G + A + Sbjct: 717 DSVEALIGAYLSTAGEKAAFLLMKSL 742 >gi|320037410|gb|EFW19347.1| hypothetical protein CPSG_03731 [Coccidioides posadasii str. Silveira] Length = 1465 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 55/254 (21%), Positives = 99/254 (38%), Gaps = 40/254 (15%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++K++GY F LL A TH S + + Y+RLEFLGD +L + +++ Sbjct: 1189 AQVKKKLGYVFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1248 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSI--------- 114 L+ ++VS + VA L L S + S+ L+ + +++ I Sbjct: 1249 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1308 Query: 115 --------------QADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154 D+VE+ I A+++D E F+ K+++ + Sbjct: 1309 SPDAWTLTSDPPKCLPDMVEAYIGAIFIDSNFSFEVVEEFFQKFLKKHFEDMTIYDTYAN 1368 Query: 155 RDAKTELQEWAHAKFGVTPEY-----KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + T L FG + Y +V + GP R V + +G+ S R Sbjct: 1369 KHPTTYLHNRLAIDFGCS-NYCLKAGEVPYVDGPG--TRVLAAVIVHDEVVTEGVASSSR 1425 Query: 210 AAEQVAAAEVLKRE 223 A+ A+ L + Sbjct: 1426 YAKLKASEAALSKL 1439 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 49/142 (34%), Gaps = 33/142 (23%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT H + ++YERLEFLGD L + S LF Sbjct: 993 PELALEALTKDSDNTDEHRAQQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1052 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRV---------------------SSDLRKD 106 E + V+ LV + + A L FIR S ++ Sbjct: 1053 EYDFHVKRMCLVCNQNLFKTAVRFKLYEFIRSQSFSRRGWYPEGLTLLQGKGQSKGATEN 1112 Query: 107 VCSFMTSIQADVVESLIAALYL 128 + ADV E+LI A L Sbjct: 1113 KHALADKTIADVCEALIGACCL 1134 >gi|222625282|gb|EEE59414.1| hypothetical protein OsJ_11564 [Oryza sativa Japonica Group] Length = 1371 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 92/243 (37%), Gaps = 34/243 (13%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +LE +GY F + LL +ALTH S + Y+RLEFLGD IL L + ++ Sbjct: 1124 INVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSK 1183 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------ 110 + L+ ++ V+ + A + L I SS S+ Sbjct: 1184 YPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYG 1243 Query: 111 ------MTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 + + DV+ES+ A+YLD EV + + + A D LQ Sbjct: 1244 WEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLA-TPETIEPDPVKGLQ 1302 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAEQVAAAE 218 E+ + Y+ G V+ + +K + A+++A+ Sbjct: 1303 EFCDRRSFK-ITYEKNHVDGVS---SVIARVKAGETTYS----ATKSGPCKLAKKLASKA 1354 Query: 219 VLK 221 VLK Sbjct: 1355 VLK 1357 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 30/146 (20%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALT + S E LE LGD L + + LF+ + EG L+ +L+S Sbjct: 957 EALTTKKCQEEF--SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAAL 1014 Query: 85 SQVARELDLASFIR-------------VSSDLRKDV-----------CSFMTSIQ----A 116 Q+A +L +I + D R + SI+ A Sbjct: 1015 CQLACSSNLVGYIHAEEFNPRDWIIPCLDYDERGNKKISFLAPNGMYSQRKMSIKSKRIA 1074 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKY 142 D VE+LI A G + A + Sbjct: 1075 DSVEALIGAYLSTAGEKAAFLLMKSL 1100 >gi|242763899|ref|XP_002340666.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500] gi|218723862|gb|EED23279.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500] Length = 1494 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 95/250 (38%), Gaps = 35/250 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E ++GY F LL A TH S + S Y+RLEFLGD +L ++ L+ F Sbjct: 1208 QVEMKLGYCFQYPKLLRSAFTHPSYPSAWSTVPCYQRLEFLGDSLLDMVCVEDLYERFPD 1267 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCS--------------- 109 L+ ++VS + +A L L + ++ S+ L+ + Sbjct: 1268 RDPQWLTEHKMAMVSNKFLGSLAVRLSLHTHLQYFSNPLQAQIARAVQDSQLAYDSHQTV 1327 Query: 110 -------FMTSIQADVVESLIAALYLDGGIE------VAGTFVDKYWKQRALKSGKFRRD 156 +D+VE+ + A+++D G + + Y++ AL + Sbjct: 1328 DFWLHTDDPPKCLSDMVEAYLGAIFVDSGFDFGVIESFYAKHIKPYFEDMALYDTFANKH 1387 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHD---PRFTVVVEISGLAPAQGMDCSKRAAEQ 213 T L FG +Y + P D P V + + AQG S R A+ Sbjct: 1388 PTTFLHRKLTDDFGC-IQYTLRAAEIPSVDGAPPVVLAAVLVHDVVLAQGTASSGRYAKI 1446 Query: 214 VAAAEVLKRE 223 A+ +K Sbjct: 1447 KASEVAMKNL 1456 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 54/174 (31%), Gaps = 33/174 (18%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 ++YERLEFLGD L + S LF + +E + V +L+ A + Sbjct: 1037 FQRGMGKNYERLEFLGDCFLKMATSISLFVESPNDQEYDFHVNRMTLICNRNLFNTAIQR 1096 Query: 92 DLASFIR-----------------VSSDLRKDVCSF--MTSIQADVVESLIAALYLDGG- 131 + IR + ADV E+LI A L GG Sbjct: 1097 KIYEHIRSKGFSRRNWYPDGMKLLRGKANEDQGLTHALGEKTIADVCEALIGASLLSGGP 1156 Query: 132 ---IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ++A V + E+ + P Y++ G Sbjct: 1157 VNRFDMAVKAVTALVNSDHHNVDNWA--------EY--SSRYSLPPYQIKEADG 1200 >gi|167234451|ref|NP_001107840.1| Dicer-2 [Tribolium castaneum] gi|270002830|gb|EEZ99277.1| hypothetical protein TcasGA2_TC001108 [Tribolium castaneum] Length = 1623 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 59/260 (22%), Positives = 101/260 (38%), Gaps = 49/260 (18%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ +E+R+GY F NR+ L +ALTHSS S + SYERLEFLGD +L LI+ +F H Sbjct: 1370 QWREIEQRLGYTFTNRAFLLQALTHSSYSPNRITLSYERLEFLGDAVLDFLITCYIFEHC 1429 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIR------------------------- 98 + G+++ +SLV+ T + + F+ Sbjct: 1430 GHLEPGQVTDLRSSLVNNNTFASLVVRCGFHKFLLMMNSNLQGHIDKFADYLASKNYVID 1489 Query: 99 -----VSSDLRKDVCSF--MTSIQADVVESLIAALYLDGGIE---VAGTFVDKYWKQRAL 148 + + ++ + + + D+ E+L A+YLD + V F W++ L Sbjct: 1490 DEVLILLEEDEMNIAEYVDVPKVLGDIFEALAGAIYLDSNKDLKTVWRVFYKIIWREIDL 1549 Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-----FTVVVEISGLAPAQG 203 S ++ L E P++ G + F G Sbjct: 1550 FSKNVPKNVIRRLYEC---HTVYPPQFSKALEVG--NQKTMVSLDFMCE---GRKKRVHG 1601 Query: 204 MDCSKRAAEQVAAAEVLKRE 223 +K A++ AA L+ Sbjct: 1602 FGTNKILAKRAAAKIALRAL 1621 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 10/94 (10%) Query: 11 KRIGYAFAN--RSLLE--KALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + + F N +L + +ALT + + + ERLE LGD L + S + F Sbjct: 1130 QILDVQFDNQSPNLCQIYQALT----AAEANDIVNLERLETLGDSFLKFVASLYIIFKFP 1185 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + EG+ + LVS + + +L ++ Sbjct: 1186 TYNEGKSTTLKGKLVSNKNLYYLGVRKNLGGILK 1219 >gi|116788280|gb|ABK24820.1| unknown [Picea sitchensis] Length = 330 Score = 144 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 101/248 (40%), Gaps = 33/248 (13%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLF 60 S + LE + Y+F +L+ +++TH+S + Y+RLEFLGD +L LI+ + Sbjct: 78 SNVNVRYLESLLKYSFRVHTLVVESVTHASYKEPSFSGCYQRLEFLGDAVLDYLITLYFY 137 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110 + G L+ ++ V+ + +Q A + +L +R +S + + Sbjct: 138 KTYPGLSPGLLTDLRSAAVNNDCYAQAAVKCNLHQQLRHASSELHNQITEFAKLISSSSA 197 Query: 111 --------------MTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRR 155 + + D++ES+ A+ +D + + K + + + Sbjct: 198 SGDHFFGWTTTEVAVPKVLGDLIESIAGAVLVDSEFDTQLVWNAMKPLLEPLVTPKTIKY 257 Query: 156 DAKTELQEWAHAKFGVTPEYKVT-FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 ELQE +F Y S + V V + G + + +KR A++ Sbjct: 258 QPVRELQELCQKEF-----YTCCFDDSQEEGTSTVKVEVRVKGDSYIETCEASNKRTAKK 312 Query: 214 VAAAEVLK 221 +AA +VLK Sbjct: 313 LAAEKVLK 320 >gi|251764794|sp|Q69LX2|DCL2B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2b; AltName: Full=Dicer-like protein 2b; Short=OsDCL2b Length = 1377 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 92/243 (37%), Gaps = 34/243 (13%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +LE +GY F + LL +ALTH S + Y+RLEFLGD IL L + ++ Sbjct: 1130 IDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSK 1189 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------ 110 + L+ ++ V+ + A + L I SS S+ Sbjct: 1190 YPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYG 1249 Query: 111 ------MTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 + + DV+ES+ A+YLD EV + + + A D LQ Sbjct: 1250 WEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLA-TPETIEPDPVKGLQ 1308 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAEQVAAAE 218 E+ + Y+ G V+ + +K + A+++A+ Sbjct: 1309 EFCDRRSFK-ITYEKNHVDGVS---SVIARVKAGETTYS----ATKSGPCKLAKKLASKA 1360 Query: 219 VLK 221 VLK Sbjct: 1361 VLK 1363 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 30/146 (20%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALT + S E LE LGD L + + LF+ + EG L+ +L+S Sbjct: 963 EALTTKKCQEEF--SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAAL 1020 Query: 85 SQVARELDLASFIR-------------VSSDLRKDV-----------CSFMTSIQ----A 116 Q+A +L +I + D R + SI+ A Sbjct: 1021 CQLACSSNLVGYIHAEEFNPRDWIIPCLDYDERGNKKISFLAPNGMYSQRKMSIKSKRIA 1080 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKY 142 D VE+LI A G + A + Sbjct: 1081 DSVEALIGAYLSTAGEKAAFLLMKSL 1106 >gi|50726394|dbj|BAD34005.1| CAF protein-like [Oryza sativa Japonica Group] gi|51091635|dbj|BAD36404.1| CAF protein-like [Oryza sativa Japonica Group] Length = 1375 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 92/243 (37%), Gaps = 34/243 (13%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +LE +GY F + LL +ALTH S + Y+RLEFLGD IL L + ++ Sbjct: 1128 IDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSK 1187 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------ 110 + L+ ++ V+ + A + L I SS S+ Sbjct: 1188 YPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYG 1247 Query: 111 ------MTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 + + DV+ES+ A+YLD EV + + + A D LQ Sbjct: 1248 WEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLA-TPETIEPDPVKGLQ 1306 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAEQVAAAE 218 E+ + Y+ G V+ + +K + A+++A+ Sbjct: 1307 EFCDRRSFK-ITYEKNHVDGVS---SVIARVKAGETTYS----ATKSGPCKLAKKLASKA 1358 Query: 219 VLK 221 VLK Sbjct: 1359 VLK 1361 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 30/146 (20%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALT + S E LE LGD L + + LF+ + EG L+ +L+S Sbjct: 961 EALTTKKCQEEF--SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAAL 1018 Query: 85 SQVARELDLASFIR-------------VSSDLRKDV-----------CSFMTSIQ----A 116 Q+A +L +I + D R + SI+ A Sbjct: 1019 CQLACSSNLVGYIHAEEFNPRDWIIPCLDYDERGNKKISFLAPNGMYSQRKMSIKSKRIA 1078 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKY 142 D VE+LI A G + A + Sbjct: 1079 DSVEALIGAYLSTAGEKAAFLLMKSL 1104 >gi|316975421|gb|EFV58865.1| putative RNase3 domain protein [Trichinella spiralis] Length = 1903 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 89/251 (35%), Gaps = 41/251 (16%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLF 60 + S E IGY F +RSLL +ALTHS+ + + Y+RLEFLGD +L LI+ L+ Sbjct: 1648 NRFSLSQFEDIIGYRFKDRSLLVQALTHSTYFYNEVTDCYQRLEFLGDAVLDHLITRHLY 1707 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELD-----------------------LASFI 97 G L+ ++L C + ++ L ++ Sbjct: 1708 EDKRMHSPGMLTDLRSALYFMYLCPGLMMMIEKFVKTLNIIKENANFDREVRVHLLNLYL 1767 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALK-----S 150 + + + D+ ES+ A+YLD G + ++ K Sbjct: 1768 LEGEEENAEEQVEVPKALGDIFESVAGAIYLDSGCSLHTVWCIYYNMLREEIEKCCLNPP 1827 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 RD L E + + + + V V + G G S R Sbjct: 1828 ISPIRD----LLELEPDRVKFS------RVERNAVEGKVKVAVTVEGKGRFVGAGRSYRI 1877 Query: 211 AEQVAAAEVLK 221 A+ AA L+ Sbjct: 1878 AKSTAAKRALR 1888 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 40/80 (50%), Gaps = 2/80 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N + A+T S+++ ++ + E LE LGD L + + + + EG+LS+ + + Sbjct: 1399 NPREVLHAITASAVAETF--NLEGLEILGDSFLKYVTTVYCYKAYSKMHEGKLSLLRSRM 1456 Query: 79 VSAETCSQVARELDLASFIR 98 +S ++ + ++ ++ Sbjct: 1457 ISNYNLYKLGKRKNIPQYMI 1476 >gi|115453927|ref|NP_001050564.1| Os03g0583900 [Oryza sativa Japonica Group] gi|122246906|sp|Q10HL3|DCL2A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2a; AltName: Full=Dicer-like protein 2a; Short=OsDCL2a gi|50399921|gb|AAT76309.1| putative RNA helicase/RNAseIII protein, C-terminus truncated [Oryza sativa Japonica Group] gi|108709535|gb|ABF97330.1| Type III restriction enzyme, res subunit family protein, expressed [Oryza sativa Japonica Group] gi|113549035|dbj|BAF12478.1| Os03g0583900 [Oryza sativa Japonica Group] gi|215701504|dbj|BAG92928.1| unnamed protein product [Oryza sativa Japonica Group] Length = 1410 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 90/243 (37%), Gaps = 30/243 (12%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +LE +GY F + LL +ALTH S + Y+RLEFLGD IL L + ++ Sbjct: 1159 INVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSK 1218 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------ 110 + L+ ++ V+ + A + L I SS S+ Sbjct: 1219 YPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGP 1278 Query: 111 ---------MTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKT 159 + + DV+ES+ A+YLD EV + + + A D Sbjct: 1279 SYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLA-TPETIEPDPVK 1337 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 LQE+ + Y+ G V+ A K A+++A+ Sbjct: 1338 GLQEFCDRRSFK-ITYEKNHVDGVS---SVIARVKAGETTYSATKSGPCKLVAKKLASKA 1393 Query: 219 VLK 221 VLK Sbjct: 1394 VLK 1396 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 30/146 (20%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALT + S E LE LGD L + + LF+ + EG L+ +L+S Sbjct: 992 EALTTKKCQEEF--SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAAL 1049 Query: 85 SQVARELDLASFIR-------------VSSDLRKDV-----------CSFMTSIQ----A 116 Q+A +L +I + D R + SI+ A Sbjct: 1050 CQLACSSNLVGYIHAEEFNPRDWIIPCLDYDERDNKKISFLAPNGMYSQRKMSIKSKRIA 1109 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKY 142 D VE+LI A G + A + Sbjct: 1110 DSVEALIGAYLSTAGEKAAFLLMKSL 1135 >gi|240255863|ref|NP_680697.4| ATRTL1 (ARABIDOPSIS THALIANA RNASEIII-LIKE 1); RNA binding / ribonuclease III [Arabidopsis thaliana] gi|332658200|gb|AEE83600.1| protein RNAse II-like 1 [Arabidopsis thaliana] Length = 264 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 56/236 (23%), Positives = 88/236 (37%), Gaps = 27/236 (11%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +LEK + Y F ++SLL KA T +S ESYE LE LGD IL + I + Sbjct: 27 MEIESLEKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFIKLY 86 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----------------DLRKD 106 G L+ V E ++VA L S++R L + Sbjct: 87 PKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAMEKYPLHSN 146 Query: 107 VCSFMTSIQADVVESLIAALYLDG-GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA 165 + + AD+VES I A+++D E + + + K + TEL E Sbjct: 147 GLLKVPKVLADIVESTIGAIFMDCNSTETVWKVIKPLLEP-IIHLDKMKSHPMTELNEMC 205 Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEVL 220 + K+T + + + + I G K+ A AA + Sbjct: 206 QKRNL-----KLTSKDTWEENQTYCF--HIEDKFVGCGHHPVKKETARNFAAKNAI 254 >gi|218193216|gb|EEC75643.1| hypothetical protein OsI_12390 [Oryza sativa Indica Group] Length = 1318 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 90/243 (37%), Gaps = 30/243 (12%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +LE +GY F + LL +ALTH S + Y+RLEFLGD IL L + ++ Sbjct: 1067 INVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSK 1126 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------ 110 + L+ ++ V+ + A + L I SS S+ Sbjct: 1127 YPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGP 1186 Query: 111 ---------MTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKT 159 + + DV+ES+ A+YLD EV + + + A D Sbjct: 1187 SYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLA-TPETIEPDPVK 1245 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 LQE+ + Y+ G V+ A K A+++A+ Sbjct: 1246 GLQEFCDRRSFK-ITYEKNHVDGVS---SVIARVKAGETTYSATKSGPCKLVAKKLASKA 1301 Query: 219 VLK 221 VLK Sbjct: 1302 VLK 1304 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 30/146 (20%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALT + S E LE LGD L + + LF+ + EG L+ +L+S Sbjct: 900 EALTTKKCQEEF--SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAAL 957 Query: 85 SQVARELDLASFIR-------------VSSDLRKDV-----------CSFMTSIQ----A 116 Q+A +L +I + D R + SI+ A Sbjct: 958 CQLACSSNLVGYIHAEEFNPRDWIIPCLDYDERDNKKISFLAPNGMYSQRKMSIKSKRIA 1017 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKY 142 D VE+LI A G + A + Sbjct: 1018 DSVEALIGAYLSTAGEKAAFLLMKSL 1043 >gi|242033789|ref|XP_002464289.1| hypothetical protein SORBIDRAFT_01g015666 [Sorghum bicolor] gi|241918143|gb|EER91287.1| hypothetical protein SORBIDRAFT_01g015666 [Sorghum bicolor] Length = 462 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 86/230 (37%), Gaps = 22/230 (9%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNH 62 + +L+ IGY F + SLL +ALTHSS + ERLEFLGD +L +++ + Sbjct: 217 IDVESLQTIIGYVFDDSSLLIEALTHSSYNTAGITTCNERLEFLGDAVLDYILTDYFYRK 276 Query: 63 -FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS------SDLRKDVCSFMTS-- 113 + L+ + V+ + A + L I S DL S Sbjct: 277 YYPKCTPALLTNLRKASVNNWCYAHAAVKAGLHKHILHSSSKQMIKDLESSGPFSGPSHG 336 Query: 114 ---------IQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQE 163 AD+ E++ A+Y+D G + + + D +EL+E Sbjct: 337 WEPGIGLPEDLADLFEAIAGAIYVDSGNDKEAVWRAMRRLLVPLATPETILLDPVSELKE 396 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAE 212 K P Y T R R V+ +G + G ++ AE Sbjct: 397 LCEHKNYPEPWYSPT-RDDAAGVTRVVAKVKAAGREYSDTGEGPNQDVAE 445 Score = 44.7 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 49/148 (33%), Gaps = 35/148 (23%) Query: 25 KALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +ALT + QE S E LE LGD L + LF+ + + +E L+ VS Sbjct: 51 EALT----TKECQEKFSLESLETLGDSFLKYVTGQDLFSKY-TYREDMLTSMRGEKVSNP 105 Query: 83 TCSQVARELDLASFIR---VSSDLRKDVC-----SFMTSIQ------------------- 115 Q+A + ++ +IR S + Sbjct: 106 ALCQLACKSEIVGYIRGELFSPKKWTIPGLGYDTRGNNKVLFRTTNDMYSLDEIPIKSKR 165 Query: 116 -ADVVESLIAALYLDGGIEVAGTFVDKY 142 AD VE+L A G A F+ Sbjct: 166 IADTVEALTGAYLSACGELAAVHFIKSL 193 >gi|307105017|gb|EFN53268.1| hypothetical protein CHLNCDRAFT_53967 [Chlorella variabilis] Length = 947 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 71/260 (27%), Positives = 100/260 (38%), Gaps = 43/260 (16%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFNH 62 +E G + L ALTH S +SYERLEFLGD +LGL TLL Sbjct: 684 RVEALTGCGVRDMGLYRTALTHKSALPLELRLEKLQSYERLEFLGDSVLGLCCRTLLMAR 743 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD---------------- 106 + EG++S R + LVS + ++ A L L ++ + + Sbjct: 744 CPDSDEGQMSRRNSLLVSGASNARYAAFLGLDRYVLLEPRALRHAPLEASSEQPWHSSAA 803 Query: 107 ----------------VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL-K 149 + AD E+L+ ALYLD G VA F + + + Sbjct: 804 GSTRRSRRRCHFSAGEGAQHKPGLLADAFEALLGALYLDRGFVVARRFCMRVLEACVEWE 863 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGM 204 + +D K L +A A P + V S ++ P +TV V G G Sbjct: 864 QLEAAQDFKALLCRYAGAHQKPQPRFSVRSTSQREYKAGLQLPWWTVEVAFGGRVVGSGG 923 Query: 205 DCSKRAAEQVAAAEVLKREG 224 KR AEQ AA E L+ G Sbjct: 924 SFDKRGAEQAAAREALEGLG 943 >gi|262340868|ref|YP_003283723.1| ribonuclease III [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272205|gb|ACY40113.1| ribonuclease III [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 250 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 22/231 (9%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALT------HSSISHSYQESYERLEFLGDRILGLLI 55 ++ L K +G+ N L++ +++ +Y +++RLEFLGD +L +I Sbjct: 15 DSILVRKLIKILGFCPKNTKFLKEVFIYSFSTKRKNLNPNYSVNFQRLEFLGDAVLNSII 74 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L KEGEL+ + +V ++++R+L +A K V S +I Sbjct: 75 SHFLCEKLPEKKEGELTQIRSKIVCRRNLNEISRKLTIADIFL-----EKSVTS--DNIL 127 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD---AKTELQEWAHAKFGVT 172 + +E+LI +YL+ G + FV + + K + + K + EW+ Sbjct: 128 GNTLEALIGFIYLEIGYQGCKNFVHQKILHSHVNITKLQNEIFSYKVWMIEWSQKN-KFL 186 Query: 173 PEYKVTFRSGPDHDP---RFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219 +K TFR D D + + I G +G SK+ +E++AA E Sbjct: 187 INFK-TFREKEDKDKNLIIYLSELTILGFEIQTKGRGSSKKKSEEMAAKEA 236 >gi|321475108|gb|EFX86072.1| hypothetical protein DAPPUDRAFT_309030 [Daphnia pulex] Length = 1607 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 97/250 (38%), Gaps = 39/250 (15%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EKR+ Y F N++LL +ALTH+S + Y+RLEFLGD +L L++ +++ Sbjct: 1348 LESFEKRLRYTFKNKALLIEALTHASYIPNRITNCYQRLEFLGDAVLDYLVTRYYYDNPC 1407 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV--------------SSDLRKDVCSF 110 L+ +++V+ ET + +A + +++ S + + Sbjct: 1408 QYTPAILTDLRSAMVNNETFAVMAVQNRFHLYLKHLSLSLNVILDRFVRSQEENGHLLMH 1467 Query: 111 M--------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 + D+ ES+ A+++D G+ + + Sbjct: 1468 NYFVLEETSEPHQSLASNIDVPKVLGDIFESVAGAIFVDSGMSLDAVWKSYLPFLHDALE 1527 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + + L H ++ +++ S D R V +EI G +G + + Sbjct: 1528 KFNEKIPISAL-RVLHERYPNALKFR-KSESLADG--RLCVAIEIQGTRVFKGAGGNSKT 1583 Query: 211 AEQVAAAEVL 220 A+ AA L Sbjct: 1584 AKSAAAKYAL 1593 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 29/141 (20%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH--FDSAKEGELSVRFNSLVS 80 L A TH ER E +GD IL L+IS ++ D EG LS+ ++ Sbjct: 1162 LTLAKTHEGF------DMERSETIGDSILKLVISIYVYGETGSDRCDEGRLSLMRMRQIN 1215 Query: 81 AETCSQVARELDLASF----------------IRVSSDLRKDVCSFM-----TSIQADVV 119 + ++ + D+ F + +D D+ + + AD + Sbjct: 1216 NKHLFKLGAKKDIGEFTVAQRFELMANFLPPGFKTPTDPDTDINAHVQQYVLMKNVADCM 1275 Query: 120 ESLIAALYLDGGIEVAGTFVD 140 E+LI GI+ A +D Sbjct: 1276 EALIGVYLTTTGIKGAIKLMD 1296 >gi|310831171|ref|YP_003969814.1| putative dsRNA-specific ribonuclease III [Cafeteria roenbergensis virus BV-PW1] gi|309386355|gb|ADO67215.1| putative dsRNA-specific ribonuclease III [Cafeteria roenbergensis virus BV-PW1] Length = 362 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 93/245 (37%), Gaps = 39/245 (15%) Query: 19 NRSLLEKALTHSSISHS------------------------YQESYERLEFLGDRILGLL 54 + ++++TH S +SYERLE+LGDR++ L+ Sbjct: 56 HIEYFQESMTHKSYLKKDIFSNNILVKAKKELGNPEGLLELRDKSYERLEYLGDRVIKLI 115 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 +S LF+ + EG ++ + S+++R++ L+ + +S + Sbjct: 116 VSMYLFHRYPKQDEGFMTKLQTVIEDKNNLSKMSRDMGLSKYFIISKQIENIRGREAEKF 175 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVT 172 D+ E+ ALYL G + + + + K ++ K +L + H++ Sbjct: 176 NEDIFEAFFGALYLSNGFNSCLELLLNLLESQIDYAEKLYRNKNYKDQLLRYYHSQKWGY 235 Query: 173 PEYKVTFRSGPDHDPRFTVVVEIS-------------GLAPAQGMDCSKRAAEQVAAAEV 219 PEY GP H F + V+ + G+ KR AEQ A+ Sbjct: 236 PEYYQIGEFGPSHKRNFIMGVKKDEHKETIITENNKLEIGLGYGVGNKKRDAEQSASKMA 295 Query: 220 LKREG 224 L G Sbjct: 296 LILLG 300 >gi|224064945|ref|XP_002301611.1| predicted protein [Populus trichocarpa] gi|222843337|gb|EEE80884.1| predicted protein [Populus trichocarpa] Length = 303 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 27/237 (11%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E+ + Y F ++ LLE+ALTH+S S SYERLE++GD +L LL + + + Sbjct: 53 DLDEVEEILHYKFKSKKLLEEALTHASFS-DQCFSYERLEYVGDSVLNLLFTKEQYFLYP 111 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++ V E ++VA + L ++R + L + Sbjct: 112 DLPPGPLTRLRSANVDTEKLARVAIKHKLHRYLRHKMPLLEEQIREFSQAILDYPLHSNG 171 Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAH 166 AD+VE+ I A+++D + + + K + + + TEL E Sbjct: 172 LVETPKALADIVEAAIGAVFIDSNFSIDVVWKIFKDLLEPIISQETLKVHPVTELYEVCQ 231 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEVLKR 222 + KV F + F V I +G K+ A AA L Sbjct: 232 KRNL-----KVKFVDLWKENMAF--DVFIDDQFVGRGTYGLKKEIAHNRAAKNALNN 281 >gi|255577153|ref|XP_002529460.1| ribonuclease III, putative [Ricinus communis] gi|223531076|gb|EEF32926.1| ribonuclease III, putative [Ricinus communis] Length = 342 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 105/246 (42%), Gaps = 33/246 (13%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ S +EK + Y F N+ L+E+ALTHSS + +Y+RLEF+GD LGL +S +F Sbjct: 3 ASSSISAVEKILNYTFKNKQLVEEALTHSSYT--ASPNYQRLEFIGDAALGLALSNHVFL 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS------------------SDL 103 + G LS+ + +S E ++VA + L F+R + D Sbjct: 61 AYPDLDPGHLSLLRAANISTEKLARVAVKHGLFRFLRHNATALDDKVKEFSDAVLREEDE 120 Query: 104 RKDVCSFM--TSIQADVVESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRR--DAK 158 + + AD+VES+ AA+Y+D ++ +V + + + ++ Sbjct: 121 AVAHGGTVKAPKVLADIVESVAAAVYVDVNFDLQRLWVIFRGLLEPIVTPEDLQQQPQPM 180 Query: 159 TELQEWAHAKFGVTPEYKVTF-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 T L E K + +SG + + + G A G K A+ AA Sbjct: 181 TMLFELCQKKGKEV---DIVHWKSGTKN----IASIYVDGGFVASGSSEQKETAKLNAAK 233 Query: 218 EVLKRE 223 L++ Sbjct: 234 GALQKL 239 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 4/71 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSK-RAAE 212 AK +L E K P Y + +GP H+ ++ V+I G+ +G + + + A+ Sbjct: 266 AKRKLHELCGKKKWPKPTYNIEKETGPSHEKKYVCSVQIATVDGVLYMRGDEKMRVKEAD 325 Query: 213 QVAAAEVLKRE 223 AA+ +++ Sbjct: 326 NSAASLMIRAL 336 >gi|212529276|ref|XP_002144795.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224] gi|210074193|gb|EEA28280.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224] Length = 1497 Score = 142 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 56/251 (22%), Positives = 95/251 (37%), Gaps = 35/251 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++K++GY F LL A TH S + S Y+RLEFLGD +L ++ L+ F Sbjct: 1212 NQIDKKLGYRFKYPRLLRSAFTHPSYPTAWSIVPCYQRLEFLGDSLLDMVCIENLYERFP 1271 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-----------------LRKDV 107 L+ ++VS + +A LDL + ++ S+ Sbjct: 1272 DRDPQWLTEHKMAMVSNKFLGSLAVRLDLHTHLQYFSNPLQGRIAQAVEDAQLAYESHQS 1331 Query: 108 CSFM------TSIQADVVESLIAALYLDGGIE------VAGTFVDKYWKQRALKSGKFRR 155 F +D+VE+ + A+++D G + + Y++ +L + Sbjct: 1332 VDFWIMIEDPPKCLSDMVEAYLGAIFVDSGFDFGVIESFYAKHIKPYFEDMSLYDTFANK 1391 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGP--DHDPRFT-VVVEISGLAPAQGMDCSKRAAE 212 T L FG +Y + P D P V + + AQ S R A+ Sbjct: 1392 HPTTFLHGKLTDDFGC-IQYTLKAAEIPSVDGAPTVVLAAVLVHDVDLAQATASSGRYAK 1450 Query: 213 QVAAAEVLKRE 223 A+ LK Sbjct: 1451 IKASEVALKNL 1461 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 72/213 (33%), Gaps = 58/213 (27%) Query: 9 LEKRIGYAFANRSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLIS 56 LE ++GYA +A+T H ++YERLEFLGD L + S Sbjct: 1012 LEIQLGYA-------LEAVTKDSDNTEEHRLEQIQFQRGMGKNYERLEFLGDCFLKMATS 1064 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS------- 109 LF + +E +L V +L+ A+E + +IR S + Sbjct: 1065 ISLFVGSPNDQEFDLHVNRMTLICNRNLFNTAKERKIYEYIR-SKGFSRRNWYPEGMKLL 1123 Query: 110 ---------------FMTSIQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKS 150 ADV E+LI A L GG ++A V + Sbjct: 1124 RGKANEDKASTHTHGLGEKTIADVCEALIGASLLSGGPVNRFDMAVKAVTRLVNSDLHNV 1183 Query: 151 GKFRRDAKTELQEWA-HAKFGVTPEYKVTFRSG 182 WA ++ P Y++ +G Sbjct: 1184 ES-----------WAGYSSHYSLPSYQIKEANG 1205 >gi|312376926|gb|EFR23879.1| hypothetical protein AND_11908 [Anopheles darlingi] Length = 994 Score = 142 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 59/283 (20%), Positives = 101/283 (35%), Gaps = 76/283 (26%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S S + + Y+RLEFLGD IL LI+ L+ Sbjct: 711 FEVFERSLGYHFQDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRR 770 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFMTSIQADVVE--- 120 G L+ ++LV+ + +A + + +S L++ + F+ IQ + Sbjct: 771 QHSPGALTDLRSALVNNTIFAALAVRHGFHRYFLHLSPGLQEVIDRFV-RIQQENGHRIT 829 Query: 121 -------------------------------SLIAA----------------------LY 127 +L+ + ++ Sbjct: 830 EEEYYLPDEDDDMLAADGGFGGGFGEIEGGQALMGSGEAEDVEVPKALGDVFESIAGAIF 889 Query: 128 LDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH-----AKFGVTPEYKVTFR 180 LD G+ K K K+ ++E AKFG Sbjct: 890 LDSGMSLNTVWKVYRKMMGPEIEKFSSSV--PKSPIRELLEMEPETAKFGKP-------E 940 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D R V VE+ G +G+ + R A+ AA L++ Sbjct: 941 KLADG-RRVRVTVEVFGKGTFRGIGRNYRIAKCTAAKCALRQL 982 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +++ +ALT S+ + + ERLE +GD L I+T L+ +D+ EG+LS + V Sbjct: 377 PAIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCRYDNVHEGKLSHLRSKQV 434 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVC 108 S ++ R L + + D Sbjct: 435 SNLNLYRLGRRKRLGDCMIAAKFEPHDNW 463 >gi|297739192|emb|CBI28843.3| unnamed protein product [Vitis vinifera] Length = 287 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 27/237 (11%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E+ +GY+F N+ LLE+A TH+S Q SYERLEF+GD +L LLI+ F + Sbjct: 29 SLEGVEQILGYSFTNKRLLEEAYTHASC-QKNQFSYERLEFMGDSVLSLLITKEQFFLYP 87 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----------------DLRKDV 107 + G L+ ++ V E ++VA + L F+R L + Sbjct: 88 DLQPGRLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQIYEFAEAIKEYPLHSNG 147 Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAH 166 + + ADVVES I A+++D V + V K + + + TEL E Sbjct: 148 QIEVPKVLADVVESTIGAVFVDCNCSVDTVWKVFKGLLEPMIVPETLKVHPVTELNERCQ 207 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR-AAEQVAAAEVLKR 222 + E+K +++ D D F I +G ++ A AA L Sbjct: 208 KRGLKL-EFKDSWQRRGDID--F----YIEDYFAGRGEYPLRKDIALNRAAKAALNN 257 >gi|321458470|gb|EFX69538.1| hypothetical protein DAPPUDRAFT_329028 [Daphnia pulex] Length = 1597 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 99/255 (38%), Gaps = 40/255 (15%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLF-NHF 63 + TLE+ + + F NR L +A +H+S H+ Y+RLEFLGD + LI+ L+ Sbjct: 1348 FETLERSLNFRFGNRFYLLQAFSHASYHHNRMTSCYQRLEFLGDAVFDYLITKYLYDCRL 1407 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV----------------------SS 101 G LS ++LV+ T + +A +++ + Sbjct: 1408 FQLTPGALSDMRSALVNNVTFAVLAVRNGFHRYLKHLVPDVHQAIDRFVQQQEMCDHATP 1467 Query: 102 DLRKDVCSF---------MTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKS 150 D + + + + D+ ESL+ A++LD ++ +Q Sbjct: 1468 DEFFLIGTHDDPMAEAVEVPKVLGDIFESLVGAVFLDSDMSLDAVWRVFYPLIRQEIEAC 1527 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + K+ + K+ ++K + PD V V +G +G+ + R Sbjct: 1528 TRVV--PKSP-IRTIYEKYPGKVQFKTL-ENLPDGRICIAVEVLNNGRLY-KGVGKNSRI 1582 Query: 211 AEQVAAAEVLKREGI 225 A+ AA L + GI Sbjct: 1583 AKNTAAKYALSQLGI 1597 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 3/74 (4%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA-KEGELSVRFNSLVSAET 83 +ALT +S+++ ERLE +GD L L S ++ S EG+++ V Sbjct: 1157 RALT-TSVAN-AGYDLERLEVIGDSFLKLAASIRVYCDSPSHFHEGKMTHLRMLQVCNRN 1214 Query: 84 CSQVARELDLASFI 97 ++ + + F+ Sbjct: 1215 LFKLGKIKSIPRFV 1228 >gi|241954756|ref|XP_002420099.1| RNAse III, putative; double-stranded ribonuclease, putative [Candida dubliniensis CD36] gi|223643440|emb|CAX42319.1| RNAse III, putative [Candida dubliniensis CD36] Length = 611 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 99/231 (42%), Gaps = 32/231 (13%) Query: 18 ANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 + L E+ H S ++ Q ERLEF GD IL L++ ++F F + E Sbjct: 243 KDPKLFERVFVHRSTVNNKQYLEANQLLHSHNERLEFYGDSILNNLVTLIIFKEFPDSAE 302 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAAL 126 G+LS + LV+ +T + A + + R+S ++ K I ADV E+ I AL Sbjct: 303 GDLSKIRSRLVNNKTLVKFAFQYGFDKKLRTRISENVLKTGDQ---KIFADVFEAYIGAL 359 Query: 127 YLDGGIEV--AGTFVDKYWKQRALK------SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 L+ G+EV ++ K + + R+AK++L + + P Y Sbjct: 360 ALEKGLEVEDVKEWLAKLYAPLIHELKIEYIEDPIDREAKSKLYALI-GQDDLHPIYNTI 418 Query: 179 FR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA------EVLKR 222 G +H +F V I+G +G S + A AA E+LK+ Sbjct: 419 QMGDGINH--KFIVQCTINGEELGRGSANSLKEAGLRAAMAGLNNTEILKK 467 Score = 38.1 bits (88), Expect = 0.85, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 8/77 (10%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 ++ DAK +L K G P Y + +G F VV+ + + + D SK Sbjct: 524 ENEPLDIDAKNKLYGILGRKIGDKPIYLTSQVNGN----LFRVVLNVRSILICEATDPSK 579 Query: 209 RAAEQVA--AAEVLKRE 223 + A +A A +L+ E Sbjct: 580 KKA--MARVAQTLLENE 594 >gi|226510363|ref|NP_001140816.1| hypothetical protein LOC100272891 [Zea mays] gi|194701228|gb|ACF84698.1| unknown [Zea mays] Length = 376 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 103/242 (42%), Gaps = 32/242 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +E+ + Y F +R+LLE+ALTH S S SY+RLEF+GD LGL S L+ + Sbjct: 42 ARVERLLRYQFCDRALLEEALTHQSFSDGAL-SYQRLEFVGDAALGLAFSNFLYLTNPTL 100 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLRKD---- 106 G LS + +S E ++VA DL +R V +L D Sbjct: 101 GPGALSTLRAANISTEKLARVAVRHDLYPLLRRKCPRLDLLVGQFIESVKQELMHDLATA 160 Query: 107 --VCSFM--TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTEL 161 S + + AD+VE++ AA+Y+D ++ + V ++ + + + T L Sbjct: 161 PYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDEQPVTTL 220 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 E V ++K + G V V + G G K A+ AA + L Sbjct: 221 HELCQKHGKVA-QFKTWQKDG-----MIVVNVFVGGEMVGLGSSEQKVIAKLNAARDALG 274 Query: 222 RE 223 + Sbjct: 275 KL 276 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS---GLAPAQGMDCSK-RAAEQ 213 K +L E K P +K+ GP H+ F V++ G G S+ + AE Sbjct: 304 KQKLIEQCIRKHWPKPIFKLEKEGGPAHERNFVCSVQVDTQTGTFVTIGESMSRVKDAEN 363 Query: 214 VAAAEVLK 221 AA ++++ Sbjct: 364 SAAHKMVE 371 >gi|327355811|gb|EGE84668.1| hypothetical protein BDDG_07613 [Ajellomyces dermatitidis ATCC 18188] Length = 1509 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 98/250 (39%), Gaps = 40/250 (16%) Query: 11 KRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 R+GY F LL A TH+S + S Y+RLEFLGD +L ++ L++ + Sbjct: 1227 DRLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYPDRDP 1286 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSI------------- 114 L+ ++VS + VA +L L + S+ L + ++ I Sbjct: 1287 QWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNNSPDA 1346 Query: 115 ----------QADVVESLIAALYLDGG--IEVAGTF----VDKYWKQRALKSGKFRRDAK 158 D++E+ I A+++D EV F + +Y++ ++ + Sbjct: 1347 WTTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQYFEDMSIYDTFANKHPT 1406 Query: 159 TELQEWAHAKFGVTPEY-----KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 T FG T Y +V G + PR V + A+G+ S R A+ Sbjct: 1407 TYFHNRLTIDFGCT-SYCLKAGEVQMVDGTE--PRVYAAVIVHDEFVAEGIASSVRYAKI 1463 Query: 214 VAAAEVLKRE 223 A+ L + Sbjct: 1464 KASEAALAKL 1473 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 64/193 (33%), Gaps = 47/193 (24%) Query: 21 SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +ALT H ++YERLEFLGD L + S LF E Sbjct: 1030 HLALEALTKDSDNTEEHRGEQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDE 1089 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRV-------------------SSDLRKDVCS 109 + V+ L+ + A + L FIR + ++ S Sbjct: 1090 YDFHVKRMCLICNQNLFNTAVRIKLYEFIRTQGFSRRNWYPEGIKLLQGKAKSESQNKHS 1149 Query: 110 FMTSIQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEW- 164 AD+ E+LI A L GG + A V + ++ EW Sbjct: 1150 LGDKTIADICEALIGASLLSGGKAHRFDSAVKAVTTFVNSDDHRAS-----------EWN 1198 Query: 165 AHAKFGVTPEYKV 177 + P+Y++ Sbjct: 1199 CYVNLYSLPDYQI 1211 >gi|239607869|gb|EEQ84856.1| dicer-like protein [Ajellomyces dermatitidis ER-3] Length = 1522 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 98/250 (39%), Gaps = 40/250 (16%) Query: 11 KRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 R+GY F LL A TH+S + S Y+RLEFLGD +L ++ L++ + Sbjct: 1240 DRLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYPDRDP 1299 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSI------------- 114 L+ ++VS + VA +L L + S+ L + ++ I Sbjct: 1300 QWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNNSPDA 1359 Query: 115 ----------QADVVESLIAALYLDGG--IEVAGTF----VDKYWKQRALKSGKFRRDAK 158 D++E+ I A+++D EV F + +Y++ ++ + Sbjct: 1360 WTTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQYFEDMSIYDTFANKHPT 1419 Query: 159 TELQEWAHAKFGVTPEY-----KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 T FG T Y +V G + PR V + A+G+ S R A+ Sbjct: 1420 TYFHNRLTIDFGCT-SYCLKAGEVQMVDGTE--PRVYAAVIVHDEFVAEGIASSVRYAKI 1476 Query: 214 VAAAEVLKRE 223 A+ L + Sbjct: 1477 KASEAALAKL 1486 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 64/193 (33%), Gaps = 47/193 (24%) Query: 21 SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +ALT H ++YERLEFLGD L + S LF E Sbjct: 1043 HLALEALTKDSDNTEEHRGEQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDE 1102 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRV-------------------SSDLRKDVCS 109 + V+ L+ + A + L FIR + ++ S Sbjct: 1103 YDFHVKRMCLICNQNLFNTAVRIKLYEFIRTQGFSRRNWYPEGIKLLQGKAKSESQNKHS 1162 Query: 110 FMTSIQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEW- 164 AD+ E+LI A L GG + A V + ++ EW Sbjct: 1163 LGDKTIADICEALIGASLLSGGKAHRFDSAVKAVTTFVNSDDHRAS-----------EWN 1211 Query: 165 AHAKFGVTPEYKV 177 + P+Y++ Sbjct: 1212 CYVNLYSLPDYQI 1224 >gi|261198280|ref|XP_002625542.1| dicer-like protein [Ajellomyces dermatitidis SLH14081] gi|239595505|gb|EEQ78086.1| dicer-like protein [Ajellomyces dermatitidis SLH14081] Length = 1522 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 98/250 (39%), Gaps = 40/250 (16%) Query: 11 KRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 R+GY F LL A TH+S + S Y+RLEFLGD +L ++ L++ + Sbjct: 1240 DRLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYPDRDP 1299 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSI------------- 114 L+ ++VS + VA +L L + S+ L + ++ I Sbjct: 1300 QWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNNSPDA 1359 Query: 115 ----------QADVVESLIAALYLDGG--IEVAGTF----VDKYWKQRALKSGKFRRDAK 158 D++E+ I A+++D EV F + +Y++ ++ + Sbjct: 1360 WTTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQYFEDMSIYDTFANKHPT 1419 Query: 159 TELQEWAHAKFGVTPEY-----KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 T FG T Y +V G + PR V + A+G+ S R A+ Sbjct: 1420 TYFHNRLTIDFGCT-SYCLKAGEVQMVDGTE--PRVYAAVIVHDEFVAEGIASSVRYAKI 1476 Query: 214 VAAAEVLKRE 223 A+ L + Sbjct: 1477 KASEAALAKL 1486 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 64/193 (33%), Gaps = 47/193 (24%) Query: 21 SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +ALT H ++YERLEFLGD L + S LF E Sbjct: 1043 HLALEALTKDSDNTEEHRGEQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDE 1102 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRV-------------------SSDLRKDVCS 109 + V+ L+ + A + L FIR + ++ S Sbjct: 1103 YDFHVKRMCLICNQNLFNTAVRIKLYEFIRTQGFSRRNWYPEGIKLLQGKAKSESQNKHS 1162 Query: 110 FMTSIQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEW- 164 AD+ E+LI A L GG + A V + ++ EW Sbjct: 1163 LGDKTIADICEALIGASLLSGGKAHRFDSAVKAVTTFVNSDDHRAS-----------EWN 1211 Query: 165 AHAKFGVTPEYKV 177 + P+Y++ Sbjct: 1212 CYVNLYSLPDYQI 1224 >gi|302819693|ref|XP_002991516.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii] gi|300140718|gb|EFJ07438.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii] Length = 1719 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 90/240 (37%), Gaps = 36/240 (15%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +LE ++ Y F NRSLL +A+TH+S + Y+RLEFLGD +L L+S LF Sbjct: 1460 SLESLEHKLQYKFQNRSLLVEAITHASQPNCLL-CYQRLEFLGDGVLDFLVSRHLFETHP 1518 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111 G L+ ++ V+ + +++ L ++ S Sbjct: 1519 GLPPGTLTDLRSAAVNNKWFARLVLRHGLHQHLQHGSVELDCEIRKFVQNVKEKPDASCF 1578 Query: 112 -----TSIQADVVESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEW 164 + D++ES+ A+++D ++ + V + R L E Sbjct: 1579 EDLSAPKVLGDLLESITGAIFVDTNFDLEKLWRVVLPLLSP-LVTPATLRFHPVRILMEL 1637 Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAEQVAAAEVL 220 K ++ + V V + + S +++A+ AA ++L Sbjct: 1638 CARKGMKVSFFRTEATTT-------EVRVTFGEESLVE---TSQEKPRKSAKIDAALKML 1687 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 55/152 (36%), Gaps = 36/152 (23%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +A+T S + SYE LE LGD L +++ LF +D EG+LS R + Sbjct: 1281 EAIT--SKKCHEEFSYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRSRATCNAAL 1338 Query: 85 SQVARELDLASFIR---------VSSDL--------RKDVCSF----------------- 110 Q+A+ +A +IR + R S+ Sbjct: 1339 HQLAKSSGIAEYIRDEEFNPSNWTGPGMLTSDSSKCRHQQGSYENEENYFSSCANGHRGI 1398 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 ADVVE+LI A G A + + Sbjct: 1399 RRKALADVVEALIGAYLATSGPPSAMELMKQL 1430 >gi|196229195|ref|ZP_03128060.1| Ribonuclease III [Chthoniobacter flavus Ellin428] gi|196226427|gb|EDY20932.1| Ribonuclease III [Chthoniobacter flavus Ellin428] Length = 152 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 3/130 (2%) Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRD 156 + S +D E+LI A+YLD V + L+ + Sbjct: 2 MGRGEESSGGRERASTLSDAFEALIGAMYLDSDFVTVRRIVLTESRDLLEDLEVDPPDTN 61 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE A ++P Y + +SGP+H RF + G G SK+ AE AA Sbjct: 62 PKGRLQELLQAISPISPTYPIVDQSGPEHQKRFVAKIVWDGKELGSGDGRSKKEAETAAA 121 Query: 217 AEVLKREGIW 226 + L +E +W Sbjct: 122 RDALSKE-LW 130 >gi|147770295|emb|CAN62473.1| hypothetical protein VITISV_005321 [Vitis vinifera] Length = 287 Score = 140 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 99/238 (41%), Gaps = 29/238 (12%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E+ +GY+F N+ LLE+A TH+S Q SYERLEF+GD +L LLI+ F + Sbjct: 29 SLEGVEQILGYSFTNKRLLEEAYTHASC-QKNQFSYERLEFMGDSVLSLLITKEQFFLYP 87 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----------------DLRKDV 107 + G L+ ++ V E ++VA + L F+R L + Sbjct: 88 DLQPGRLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQIYEFAEAIKEYPLHSNG 147 Query: 108 CSFMTSIQADVVESLIAALYLD--GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA 165 + + ADVVES I A+++D ++ + + + TEL E Sbjct: 148 QIEVPKVLADVVESTIGAVFVDCNCSVDTVXKVFKGLLEPMIV-PETLKVHPVTELNERC 206 Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR-AAEQVAAAEVLKR 222 + E+K +++ D D F I +G ++ A AA L Sbjct: 207 QKRGLKL-EFKDSWQRRGDID--F----YIEDYFAGRGEYPLRKDIALNRAAKAALNN 257 >gi|294655098|ref|XP_457193.2| DEHA2B05302p [Debaryomyces hansenii CBS767] gi|199429689|emb|CAG85188.2| DEHA2B05302p [Debaryomyces hansenii] Length = 540 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 23/228 (10%) Query: 18 ANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 + L + H SI ++ ERLEFLGD +L L++ ++FN F A E Sbjct: 188 NDIKLCNRVFIHKSIINNKSYLHKSELMASHNERLEFLGDSVLNNLVTVIIFNKFPEASE 247 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT-SIQADVVESLIAALY 127 GELS +SLV+ T ++ + +R S++ + T I AD+ E+ I AL Sbjct: 248 GELSKIRSSLVNNVTLAEFSILYGFDKKLR--SNINDQILKDSTQKIYADIFEAYIGALA 305 Query: 128 LDGGIEVAG--TFVDKYWKQRALK-------SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ + ++ R K + + +DAK+EL P+Y+V Sbjct: 306 IERKFDYTEIQQWLTTLMDSRLNKHARQISSTEEINKDAKSELYSLI-GTAAFHPQYEVV 364 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 +G F + + G S + A AA E LK + + Sbjct: 365 K-TGDGSSNPFVIRCTMGDDVLGVGTAPSNKDAGLRAAMEALKNKSLL 411 Score = 38.9 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 4/67 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 AK EL G P Y++ S +F +++ G+ A +D +K+ A AA Sbjct: 469 AKNELYSILGKNMGTIPIYEIYEMS----SKQFRAELKVKGIHVATAVDATKKRACSRAA 524 Query: 217 AEVLKRE 223 ++ + Sbjct: 525 MTIINNK 531 >gi|296434189|tpg|DAA12515.1| TPA_exp: Dicer 1 protein [Naumovia castellii] Length = 610 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 25/225 (11%) Query: 18 ANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 ++++L A H S+ + + S ERLEFLGD LG L++ +++ + A E Sbjct: 116 SDQNLENLAFIHRSLPNMNVKLTELQKTVMSNERLEFLGDSWLGALVAYIIYKKYPYANE 175 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-TSIQADVVESLIAALY 127 G LS ++V+ ++ +L ++ + T AD VE+ I AL Sbjct: 176 GALSKMKEAIVNNNNLEKICEKLGFKERLKENIPRSSMKIKDRLTKNYADCVEAYIGALV 235 Query: 128 LDG---GIEVAGTFVDKYWKQRALKSG------KFRRDAKTELQEWAH-AKFGVTPEYKV 177 +D ++++ ++ ++ G ++AK EL + G YK Sbjct: 236 IDRFSTEFNDVALWLEELSEEHFIELGPMMVKEPLNKNAKGELGAFLQFNNIGAKISYKR 295 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F V V + G + R AEQ AA E L + Sbjct: 296 LNDKSP-----FKVEVRLGNNLLGIGDGSNVREAEQRAAMEALAQ 335 Score = 39.7 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 6/57 (10%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL--APAQGMDCSKRAAEQVAAAEVLK 221 K+ + PEY D F V I G+ +G SK+ ++ +A + L Sbjct: 544 GKYKLYPEYNTEQLGMTD----FYTVCFIKGVGVEIGKGHGRSKKISQHKSAEDALN 596 >gi|297834980|ref|XP_002885372.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp. lyrata] gi|297331212|gb|EFH61631.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp. lyrata] Length = 391 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 106/246 (43%), Gaps = 33/246 (13%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ LEK + Y F N+SLL++A+TH+S + SYERLEF+GD +GL IS L+ Sbjct: 57 MESM--EALEKILNYKFKNKSLLKEAITHTSCTD--FPSYERLEFVGDSAIGLAISNYLY 112 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLR 104 + S + +LS+ + VS E ++V L F+R V + Sbjct: 113 LTYPSLEPHQLSLLRAANVSTEKLARVTLNHGLYQFLRRNAPSLDEKVKEFSDAVGKEDD 172 Query: 105 KDVCSFM----TSIQADVVESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRR--DA 157 V + AD+ ES+ A+Y+D ++ +V + + + ++ Sbjct: 173 FSVAYGGLVKAPKVLADLFESVAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQP 232 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + L + H ++ ++ D + + + A G +K A +AA Sbjct: 233 VSMLFKLCHKHKK-----RIDIKNWKDGN-ISIADIYLDDEFLASGRAENKDIARLIAAK 286 Query: 218 EVLKRE 223 E L++ Sbjct: 287 EALRKL 292 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 26/138 (18%) Query: 94 ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 F+ KD+ L E + + + + Sbjct: 266 DEFLASGRAENKDIAR------------------LIAAKEALRKLSEVFPVEMVIDEDSV 307 Query: 154 R---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI----SGLAPAQGMDC 206 + AKT+L E K P Y + H RF +I +G + Sbjct: 308 EIELKHAKTKLNEICLKKKWPKPIYSIEEDRTSVHGKRFVCSAKIKIPTEETLYMKGDEQ 367 Query: 207 SK-RAAEQVAAAEVLKRE 223 SK + AE +A +++ Sbjct: 368 SKIKKAESSSAYHMIRAL 385 >gi|328696734|ref|XP_003240110.1| PREDICTED: endoribonuclease dcr-1-like isoform 3 [Acyrthosiphon pisum] Length = 1630 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 35/193 (18%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y LE+RIGY+F ++ LL +ALTH + + E Y+RLEFLGD IL LI+T + H Sbjct: 1373 YELLERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYH 1432 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD----------LRKDVCSFM---- 111 GE++ +SLV+ T + ++ + L FI S + + Sbjct: 1433 KTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQE 1492 Query: 112 ------------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKS-- 150 + D+ ESLIAA+YLD ++ + + + ++ +K Sbjct: 1493 VLYLIEESDCYAAESVDVPKVLGDLFESLIAAIYLDCNRDLNFVWAICYRFLEKEIKEFC 1552 Query: 151 GKFRRDAKTELQE 163 ++ L E Sbjct: 1553 DNVPKNPIRILHE 1565 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 31/59 (52%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 +YER+E GD L +S +LF+ F S EG L+ LV V R L+L S++ Sbjct: 1151 NYERMETYGDSFLKFAVSLVLFDAFPSDNEGVLTELKMKLVGNRNLLYVGRNLNLGSYL 1209 >gi|322510548|gb|ADX05862.1| putative ribonuclease III [Organic Lake phycodnavirus 1] Length = 293 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 58/278 (20%), Positives = 107/278 (38%), Gaps = 61/278 (21%) Query: 3 ALRYSTLEKRIG-----YAFANRSLLEKALTHSSISHS---------------YQESYER 42 ++ + +E+ + + + + E+A +SS Q S ER Sbjct: 14 KIKKTDIEQILRNYHIYHKVKHMEIWERAFVNSSYIKQPNIMYSSCPFNCLELKQSSNER 73 Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 LEF+GD IL L+ L+ F A EG ++ + +LV + ++A +L L ++ +S Sbjct: 74 LEFIGDGILELITKYYLYKRFPDADEGFMTEKKINLVKNDHIGKLAYKLGLHKYLLLSKQ 133 Query: 103 LRKDVCSFMTSIQADVVESLIAALYLD------------GGIEVAGTFVDKYWKQRALKS 150 + + ES + AL+LD GI+ F++ + + + Sbjct: 134 SEEKKNRCNYKKLGCLFESFLGALFLDTNETQDELFLMGNGIQYCQLFIENVFNKLVDWT 193 Query: 151 GKFRRD--AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI------------- 195 D K Q +F TPEYK+ + D + R+T+ V + Sbjct: 194 EILENDDNYKNIFQVKIQKEFKCTPEYKIIQQ---DEELRYTMGVYLYLNSKDTSSTKFE 250 Query: 196 -----------SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + G+ K+ AEQ+A + LK+ Sbjct: 251 LIKNLEHIKPNTNVHFGTGVHKIKKKAEQLACLDALKK 288 >gi|328696730|ref|XP_003240109.1| PREDICTED: endoribonuclease dcr-1-like isoform 2 [Acyrthosiphon pisum] Length = 1648 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 35/193 (18%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y LE+RIGY+F ++ LL +ALTH + + E Y+RLEFLGD IL LI+T + H Sbjct: 1391 YELLERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYH 1450 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD----------LRKDVCSFM---- 111 GE++ +SLV+ T + ++ + L FI S + + Sbjct: 1451 KTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQE 1510 Query: 112 ------------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKS-- 150 + D+ ESLIAA+YLD ++ + + + ++ +K Sbjct: 1511 VLYLIEESDCYAAESVDVPKVLGDLFESLIAAIYLDCNRDLNFVWAICYRFLEKEIKEFC 1570 Query: 151 GKFRRDAKTELQE 163 ++ L E Sbjct: 1571 DNVPKNPIRILHE 1583 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 31/59 (52%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 +YER+E GD L +S +LF+ F S EG L+ LV V R L+L S++ Sbjct: 1169 NYERMETYGDSFLKFAVSLVLFDAFPSDNEGVLTELKMKLVGNRNLLYVGRNLNLGSYL 1227 >gi|240275432|gb|EER38946.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H143] Length = 495 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 97/251 (38%), Gaps = 44/251 (17%) Query: 12 RIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 R+GY F LL A TH+S + S Y+RLEFLGD +L ++ L++H+ Sbjct: 156 RLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYPDRDPQ 215 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI-------------- 114 L+ ++VS + V +L L + +S+ L + + I Sbjct: 216 WLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSPDAW 275 Query: 115 ---------QADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFRRDAKT 159 D++E+ I A+++D EV F + +Y++ ++ + T Sbjct: 276 TTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQYFEDMSVYDAFANKHPTT 335 Query: 160 ELQEWAHAKFGVTPEY-------KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 FG Y ++ + +PR V + AQG+ S R A+ Sbjct: 336 YFHNRLTIDFGCA-NYCLKAGEVQMVDST----EPRIYAAVIVHDKFVAQGIASSVRYAK 390 Query: 213 QVAAAEVLKRE 223 A+ L + Sbjct: 391 TKASEAALAKL 401 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 31/99 (31%), Gaps = 20/99 (20%) Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF---------------I 97 + S LF E + V+ L+ + A L L F I Sbjct: 1 MATSISLFAMNPDNDEFDFHVKRMCLICNQNLFNTAVRLKLYEFVRTQGFSRRNWYPEGI 60 Query: 98 RVSSDLRKDVCSFM-----TSIQADVVESLIAALYLDGG 131 ++ K + AD+ E+LI A L GG Sbjct: 61 KLLQGKAKSESAQNKQALGDKTIADICEALIGASLLSGG 99 >gi|328696732|ref|XP_001945890.2| PREDICTED: endoribonuclease dcr-1-like isoform 1 [Acyrthosiphon pisum] Length = 1691 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 35/193 (18%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y LE+RIGY+F ++ LL +ALTH + + E Y+RLEFLGD IL LI+T + H Sbjct: 1434 YELLERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYH 1493 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD----------LRKDVCSFM---- 111 GE++ +SLV+ T + ++ + L FI S + + Sbjct: 1494 KTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQE 1553 Query: 112 ------------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKS-- 150 + D+ ESLIAA+YLD ++ + + + ++ +K Sbjct: 1554 VLYLIEESDCYAAESVDVPKVLGDLFESLIAAIYLDCNRDLNFVWAICYRFLEKEIKEFC 1613 Query: 151 GKFRRDAKTELQE 163 ++ L E Sbjct: 1614 DNVPKNPIRILHE 1626 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 31/59 (52%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 +YER+E GD L +S +LF+ F S EG L+ LV V R L+L S++ Sbjct: 1212 NYERMETYGDSFLKFAVSLVLFDAFPSDNEGVLTELKMKLVGNRNLLYVGRNLNLGSYL 1270 >gi|289425710|ref|ZP_06427468.1| RNase3 domain protein [Propionibacterium acnes SK187] gi|289153883|gb|EFD02586.1| RNase3 domain protein [Propionibacterium acnes SK187] Length = 146 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 3/126 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFN 61 + ++ L + +G L ALTH S ++ + + ERLEFLGD +LGL +++ L+ Sbjct: 20 VDHTPLLESLGVDLQ-PEHLRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVASQLYI 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + S E ++S S+VS S +ARE++L I + + SI AD E+ Sbjct: 79 TYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTEA 138 Query: 122 LIAALY 127 + A+Y Sbjct: 139 IFGAIY 144 >gi|317150438|ref|XP_001824024.2| dicer-like protein 1 [Aspergillus oryzae RIB40] gi|158706453|sp|Q2U6C4|DCL1_ASPOR RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent helicase dcl1 Length = 1523 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 57/255 (22%), Positives = 100/255 (39%), Gaps = 39/255 (15%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65 +E+++GY F LL A TH S ++ + Y+RLEFLGD +L ++ LF + Sbjct: 1243 KVEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPD 1302 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSI---------- 114 L+ ++VS + +A +L L + +R S+ L+ + + I Sbjct: 1303 KDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENESQGA 1362 Query: 115 -------------QADVVESLIAALYLDGGIE--VAGTF----VDKYWKQRALKSGKFRR 155 D+VE+ + A ++D + V F V Y+ + + Sbjct: 1363 VDYWLVTKDPPKCLPDMVEAYLGAAFVDSDFQFRVVEDFFQRHVKSYFHDMTIYDTFANK 1422 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP---RFTVVVEISGLAPAQGMDCSKRAAE 212 T LQ ++G T Y + P D V + + A+G S R A+ Sbjct: 1423 HPTTFLQNRLTNEYGCT-NYCLKAGEIPVVDGGTVSVLAAVIVHEVVIAEGTASSGRYAK 1481 Query: 213 QVAAAEV---LKREG 224 A+ + L+ G Sbjct: 1482 VKASEKALSVLENMG 1496 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 50/147 (34%), Gaps = 34/147 (23%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +A T H + ++YERLEFLGD L + S LF Sbjct: 1045 PEYALEAFTKDSDNTEEHRVQQIHVQRGMGKNYERLEFLGDCFLKMATSISLFVQNPDDD 1104 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASF-----------------IRVSSDLRKDVCSF 110 E + V L+ + A + +L + + D RK + + Sbjct: 1105 EFDFHVNRMCLICNKNLFNTALKKELYQYTRSRGFSRHTWYPDGLTLLHGRDHRKKISAE 1164 Query: 111 -----MTSIQADVVESLIAALYLDGGI 132 ADV E+LI A L GG+ Sbjct: 1165 SKHALREKTVADVCEALIGASLLSGGL 1191 >gi|251765118|sp|Q6ATG6|RTL2_ORYSJ RecName: Full=Ribonuclease 3-like protein 2; AltName: Full=Ribonuclease III-like protein 2; Short=RNase III-like protein 2 Length = 317 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 32/242 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +E+ + Y F + LLE+ALTH S + SY+RLEF+GD LGL S L+ + Sbjct: 38 ARVERLLRYQFRDGRLLEEALTHQSFADDAV-SYQRLEFVGDSALGLAFSNFLYLTNPTL 96 Query: 67 KEGELSVRFNSLVSAETCSQVARELDL---------------ASFIRVSSDLRKD----- 106 G LS + +S E ++VA DL FI +D Sbjct: 97 GPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTV 156 Query: 107 --VCSFM--TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTEL 161 S + + AD+VE++ AA+Y+D ++ + V ++ + + + T L Sbjct: 157 PYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDEQPVTML 216 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 E + ++K + G V V ++G G K A+ AA + + Sbjct: 217 HELCQKHGKMA-QFKTWQKGGMT-----VVNVFVAGELVGIGSSEQKVIAKLNAARDATR 270 Query: 222 RE 223 + Sbjct: 271 KL 272 >gi|18402610|ref|NP_566661.1| RTL2 (RNASE THREE-LIKE PROTEIN 2); double-stranded RNA binding / ribonuclease III [Arabidopsis thaliana] gi|75274109|sp|Q9LTQ0|RTL2_ARATH RecName: Full=Ribonuclease 3-like protein 2; AltName: Full=Ribonuclease III-like protein 2; Short=RNase III-like protein 2; AltName: Full=Ribonuclease three-like protein 2 gi|9294562|dbj|BAB02825.1| unnamed protein product [Arabidopsis thaliana] gi|332642855|gb|AEE76376.1| RNAse THREE-like protein 2 [Arabidopsis thaliana] Length = 391 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 33/246 (13%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ +EK + Y F+N+SLL++A+TH+S + SYERLEF+GD +GL IS L+ Sbjct: 57 MESM--EAVEKILNYKFSNKSLLKEAITHTSCTD--FPSYERLEFIGDSAIGLAISNYLY 112 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLR 104 + S + +LS+ + VS E ++V+ L SF+R V + Sbjct: 113 LTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDD 172 Query: 105 KDVCSFM----TSIQADVVESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRR--DA 157 V + AD+ ESL A+Y+D ++ +V + + + ++ Sbjct: 173 LSVSYGGLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQP 232 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + L + H ++ ++ D + V+ + A G +K A +AA Sbjct: 233 VSMLFKLCHKHKK-----RIDIKNWKDGN-VSIAVIYLDDELLASGRAENKDIARLIAAK 286 Query: 218 EVLKRE 223 E L++ Sbjct: 287 EALRKL 292 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 8/104 (7%) Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 L E + + + + AKT+L E K P Y V Sbjct: 282 LIAAKEALRKLSEVFPVEMVIDEDSVEIQLTHAKTKLNEICLKKKWPKPIYSVEEDRSSV 341 Query: 185 HDPRFTVVVEI----SGLAPAQGMDCSK-RAAEQVAAAEVLKRE 223 RF +I +G + SK + AE +A +++ Sbjct: 342 QGKRFVCSAKIKITEEKTLYMKGDEQSKIKKAESSSAYHMIRAL 385 >gi|238881386|gb|EEQ45024.1| conserved hypothetical protein [Candida albicans WO-1] Length = 611 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 95/230 (41%), Gaps = 30/230 (13%) Query: 18 ANRSLLEKALTHSS---------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 N L E+ H S +H ERLEF GD IL L + ++F F + E Sbjct: 243 NNPKLFERVFIHKSTVNNKQYLEANHLLHSHNERLEFYGDSILNNLATLIIFKEFPDSTE 302 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAAL 126 G+LS + LVS +T ++A + + R+S D+ K I ADV E+ I AL Sbjct: 303 GDLSKIRSKLVSNKTLIKIAFQYGFDKKLRSRISDDVLKTGD---KKIFADVFEAYIGAL 359 Query: 127 YLDGGIEV--AGTFVDKYWKQRALK------SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ G ++ ++ K + + R+AK++L + + P Y Sbjct: 360 AMERGFDLEDVKEWLAKVYAPLIHELKIEYIEEPIDREAKSKLYGLI-GQDDLHPVYNTL 418 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA------EVLKR 222 H+ F V I+G +G + + A AA EVLK+ Sbjct: 419 QMGDGIHNK-FIVQCTINGEELGRGTANNLKEAGLRAAMAGLNNNEVLKK 467 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 ++ DAK +L K G P Y + +G F VV+ + G+ + D SK Sbjct: 524 ENEPLDIDAKNKLYGILGRKIGDKPAYLTSQINGN----LFKVVLCVRGITICEATDPSK 579 Query: 209 RAAEQVAAAEVLKRE 223 + A AA +L+ E Sbjct: 580 KKAMARAAQTLLENE 594 >gi|68477460|ref|XP_717201.1| probable ribonuclease III [Candida albicans SC5314] gi|46438903|gb|EAK98227.1| probable ribonuclease III [Candida albicans SC5314] Length = 611 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 30/230 (13%) Query: 18 ANRSLLEKALTHSS---------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 + L E+ H S +H ERLEF GD IL L + ++F F + E Sbjct: 243 NDPKLFERVFIHKSTVNNKQYLEANHLLHSHNERLEFYGDSILNNLATLIIFKEFPDSTE 302 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAAL 126 G+LS + LVS +T ++A + + R+S D+ K I ADV E+ I AL Sbjct: 303 GDLSKIRSKLVSNKTLIKIAFQYGFDKKLRSRISDDVLKTGD---KKIFADVFEAYIGAL 359 Query: 127 YLDGGIEV--AGTFVDKYWKQRALK------SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ G ++ ++ K + + R+AK++L + + P Y Sbjct: 360 AMERGFDLEDVKEWLAKVYAPLIHELKIEYIEEPIDREAKSKLYGLI-GQDDLHPVYNTL 418 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA------EVLKR 222 H+ F V I+G +G + + A AA EVLK+ Sbjct: 419 QMGDGIHNK-FIVQCTINGEELGRGTANNLKEAGLRAAMAGLNNNEVLKK 467 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 ++ DAK +L K G P Y + +G F VV+ I G+ + D SK Sbjct: 524 ENEPLDIDAKNKLYGILGRKIGDKPAYLTSQINGN----LFKVVLCIRGITICETTDPSK 579 Query: 209 RAAEQVAAAEVLKRE 223 + A AA +L+ E Sbjct: 580 KKAMARAAQTLLENE 594 >gi|326481629|gb|EGE05639.1| hypothetical protein TEQG_04648 [Trichophyton equinum CBS 127.97] Length = 1519 Score = 138 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 89/251 (35%), Gaps = 38/251 (15%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++ ++GY F LL A H S Y+RLEFLGD +L ++ LF + Sbjct: 1236 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------S 100 L+ ++VS + +A L+L + Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVNLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154 + + D+VE+ + A+++D E F+ Y++ ++ Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDEFFRKFIQHYFEDMSVYDTFAN 1415 Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV----VVEISGLAPAQGMDCSKRA 210 + T L FG T Y + P D TV V + A+G+ S R Sbjct: 1416 KHPITFLHTRLAVDFGCTF-YALKADEIPCVDGT-TVRALAAVCVHDDIVAEGVASSPRH 1473 Query: 211 AEQVAAAEVLK 221 A+ A+ L+ Sbjct: 1474 AKLKASQNALQ 1484 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 63/195 (32%), Gaps = 47/195 (24%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT S ++YERLEFLGD L + S LF Sbjct: 1040 PELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1099 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDLRKDVCSFMT 112 E + V+ L+ + A L++ FIR + K Sbjct: 1100 EYDYHVKRMLLICNQNLFNNAIILEIFKFIRSRSFSRRAWYPEGLTLLKGKDKKEGPNGP 1159 Query: 113 ------SIQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 ADV E+LI A L GG ++A V + + K+ D Sbjct: 1160 EHALADKTIADVCEALIGASLLAGGPDHKFDMATKAVTVFVNSDDHRVEKWA-DY----- 1213 Query: 163 EWAHAKFGVTPEYKV 177 ++ P Y+ Sbjct: 1214 ----SRLYSLPNYQT 1224 >gi|326472405|gb|EGD96414.1| dicer [Trichophyton tonsurans CBS 112818] Length = 1519 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 89/251 (35%), Gaps = 38/251 (15%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++ ++GY F LL A H S Y+RLEFLGD +L ++ LF + Sbjct: 1236 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------S 100 L+ ++VS + +A L+L + Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVNLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154 + + D+VE+ + A+++D E F+ Y++ ++ Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDEFFRKFIQHYFEDMSVYDTFAN 1415 Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV----VVEISGLAPAQGMDCSKRA 210 + T L FG T Y + P D TV V + A+G+ S R Sbjct: 1416 KHPITFLHTRLAVDFGCTF-YALKADEIPCVDGT-TVRALAAVCVHDDIVAEGVASSPRH 1473 Query: 211 AEQVAAAEVLK 221 A+ A+ L+ Sbjct: 1474 AKLKASQNALQ 1484 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 63/195 (32%), Gaps = 47/195 (24%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT S ++YERLEFLGD L + S LF Sbjct: 1040 PELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1099 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDLRKDVCSFMT 112 E + V+ L+ + A L++ FIR + K Sbjct: 1100 EYDYHVKRMLLICNQNLFNNAIILEIFKFIRSRSFSRRAWYPEGLTLLKGKDKKEGPNGP 1159 Query: 113 ------SIQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 ADV E+LI A L GG ++A V + + K+ D Sbjct: 1160 EHALADKTIADVCEALIGASLLAGGPDHKFDMATKAVTVFVNSDDHRVEKWA-DY----- 1213 Query: 163 EWAHAKFGVTPEYKV 177 ++ P Y+ Sbjct: 1214 ----SRLYSLPNYQT 1224 >gi|68477301|ref|XP_717277.1| probable ribonuclease III [Candida albicans SC5314] gi|46438981|gb|EAK98304.1| probable ribonuclease III [Candida albicans SC5314] Length = 611 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 30/230 (13%) Query: 18 ANRSLLEKALTHSS---------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 + L E+ H S +H ERLEF GD IL L + ++F F + E Sbjct: 243 NDPKLFERVFIHKSTVNNKQYLEANHLLHSHNERLEFYGDSILNNLATLIIFKEFPDSTE 302 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAAL 126 G+LS + LVS +T ++A + + R+S D+ K I ADV E+ I AL Sbjct: 303 GDLSKIRSKLVSNKTLIKIAFQYGFDKKLRSRISDDVLKTGD---KKIFADVFEAYIGAL 359 Query: 127 YLDGGIEV--AGTFVDKYWKQRALK------SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ G ++ ++ K + + R+AK++L + + P Y Sbjct: 360 AMERGFDLEDVKEWLAKVYAPLIHELKIEYIEEPIDREAKSKLYGLI-GQDDLHPVYNTL 418 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA------EVLKR 222 H+ F V I+G +G + + A AA EVLK+ Sbjct: 419 QMGDGIHNK-FIVQCTINGEELGRGTANNLKEAGLRAAMAGLNNNEVLKK 467 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 ++ DAK +L K G P Y + +G F VV+ + G+ + D SK Sbjct: 524 ENEPLDIDAKNKLYGILGRKIGDKPAYLTSQINGN----LFKVVLCVRGITICEATDPSK 579 Query: 209 RAAEQVAAAEVLKRE 223 + A AA +L+ E Sbjct: 580 KKAMARAAQTLLENE 594 >gi|17511264|gb|AAK68755.2| Unknown protein [Arabidopsis thaliana] gi|20148705|gb|AAM10243.1| unknown protein [Arabidopsis thaliana] Length = 391 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 33/246 (13%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ +EK + Y F+N+SLL++A+TH+S + SYERLEF+GD +GL IS L+ Sbjct: 57 MESM--EAVEKILNYKFSNKSLLKEAVTHTSCTD--FPSYERLEFIGDSAIGLAISNYLY 112 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLR 104 + S + +LS+ + VS E ++V+ L SF+R V + Sbjct: 113 LTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDD 172 Query: 105 KDVCSFM----TSIQADVVESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRR--DA 157 V + AD+ ESL A+Y+D ++ +V + + + ++ Sbjct: 173 LSVSYGGLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQP 232 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + L + H ++ ++ D + V+ + A G +K A +AA Sbjct: 233 VSMLFKLCHKHKK-----RIDIKNWKDGN-VSIAVIYLDDELLASGRAENKDIARLIAAK 286 Query: 218 EVLKRE 223 E L++ Sbjct: 287 EALRKL 292 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 8/104 (7%) Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 L E + + + + AKT+L E K P Y V Sbjct: 282 LIAAKEALRKLSEVFPVEMVIDEDSVEIQLTHAKTKLNEICLKKKWPKPIYSVEEDRSSV 341 Query: 185 HDPRFTVVVEI----SGLAPAQGMDCSK-RAAEQVAAAEVLKRE 223 RF +I +G + SK + AE +A +++ Sbjct: 342 QGKRFVCSAKIKITEEKTLYMKGDEQSKIKKAESSSAYHMIRAL 385 >gi|224613141|dbj|BAH24245.1| dsRNA-specific ribonuclease RNaseIII [Korean potato witches'-broom phytoplasma] Length = 163 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 3/152 (1%) Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 ++ + V ++ A+E+ L ++I + +K + SI +D E+L A+YLD Sbjct: 5 MTKKRAQAVCIDSLFIYAKEIKLKNYILLGKGEKKRYDN-NYSIISDAFEALFGAIYLDL 63 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 G LK D KT+LQE YK+ G H+ F Sbjct: 64 GFNQTQKIFHNIVLP-YLKKVINIIDFKTKLQELIQTNRH-NINYKIVSEQGLAHEKEFI 121 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + +GM +K+A+EQ AA + L + Sbjct: 122 TEVYLEEQFLGRGMGKTKKASEQKAAQQALIK 153 >gi|225561826|gb|EEH10106.1| dicer-like protein [Ajellomyces capsulatus G186AR] Length = 1502 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 95/240 (39%), Gaps = 41/240 (17%) Query: 12 RIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 R+GY F LL A TH+S + S Y+RLEFLGD +L ++ L++H+ Sbjct: 1245 RLGYYFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEHLYHHYPDRDPQ 1304 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI-------------- 114 L+ ++VS + VA +L L + +S+ L + + I Sbjct: 1305 WLTEHKMAMVSNKFLGAVAVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSPDAW 1364 Query: 115 ---------QADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 D++E+ I A+++D EV F +Y KQ + DA Sbjct: 1365 TTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQYFEDMSIY--DA------ 1416 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K E ++ + +PR V + AQG+ S R A+ A+ L + Sbjct: 1417 -FANKHPTAGEVQMVDST----EPRIYAAVIVHDKFVAQGIASSVRYAKTKASEAALAKL 1471 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 49/143 (34%), Gaps = 32/143 (22%) Query: 21 SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +ALT H ++YERLEFLGD L + S LF E Sbjct: 1046 HLALEALTKDSDNTEEHRKEQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDE 1105 Query: 69 GELSVRFNSLVSAETCSQVARELDLASF---------------IRVSSDLRKDVCSFM-- 111 + V+ L+ + A L L F I++ K + Sbjct: 1106 FDFHVKRMCLICNQNLFNTAVRLKLYEFVRTQGFSRRNWYPEGIKLLQGKAKSESAQNKQ 1165 Query: 112 ---TSIQADVVESLIAALYLDGG 131 AD+ E+LI A L GG Sbjct: 1166 ALGDKTIADICEALIGASLLSGG 1188 >gi|327297344|ref|XP_003233366.1| dicer-like protein 1 [Trichophyton rubrum CBS 118892] gi|326464672|gb|EGD90125.1| dicer-like protein 1 [Trichophyton rubrum CBS 118892] Length = 1519 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 89/251 (35%), Gaps = 38/251 (15%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++ ++GY F LL A H S Y+RLEFLGD +L ++ LF + Sbjct: 1236 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------S 100 L+ ++VS + +A L+L + Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154 + + D+VE+ + A+++D + F+ Y++ ++ Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDTFAN 1415 Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV----VVEISGLAPAQGMDCSKRA 210 + T L FG T Y + P D TV V + A+G+ S R Sbjct: 1416 KHPITFLHTRLAVDFGCTF-YALKADEIPCVDGT-TVRALAAVCVHDDIVAEGVASSPRH 1473 Query: 211 AEQVAAAEVLK 221 A+ A+ L+ Sbjct: 1474 AKLKASQNALQ 1484 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 50/147 (34%), Gaps = 33/147 (22%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT S ++YERLEFLGD L + S LF Sbjct: 1040 PELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1099 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDLRKDVCSFMT 112 E + V+ L+ + A L++ FIR + K Sbjct: 1100 EYDYHVKRMLLICNQNLFNNAINLEIFKFIRSRSFSRRAWYPEGLTLLKGKDKKEGPNGP 1159 Query: 113 ------SIQADVVESLIAALYLDGGIE 133 ADV E+LI A L GG + Sbjct: 1160 EHALADKTIADVCEALIGASLLAGGPD 1186 >gi|238499729|ref|XP_002381099.1| dicer-1, putative [Aspergillus flavus NRRL3357] gi|220692852|gb|EED49198.1| dicer-1, putative [Aspergillus flavus NRRL3357] Length = 605 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 56/255 (21%), Positives = 99/255 (38%), Gaps = 39/255 (15%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65 +E+++GY F LL A TH S ++ + Y+RLEFLGD +L ++ LF + Sbjct: 325 KVEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPD 384 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSI---------- 114 L+ ++ S + +A +L L + +R S+ L+ + + I Sbjct: 385 KDPQWLTEHKMAMASNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENESQGA 444 Query: 115 -------------QADVVESLIAALYLDGGIE--VAGTF----VDKYWKQRALKSGKFRR 155 D+VE+ + A ++D + V F V Y+ + + Sbjct: 445 VDYWLVTKDPPKCLPDMVEAYLGAAFVDSDFQFRVVEDFFQRHVKSYFHDMTIYDTFANK 504 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP---RFTVVVEISGLAPAQGMDCSKRAAE 212 T LQ ++G T Y + P D V + + A+G S R A+ Sbjct: 505 HPTTFLQNRLTNEYGCT-NYCLKAGEIPVVDGGTVSVLAAVIVHEVVIAEGTASSGRYAK 563 Query: 213 QVAAAEV---LKREG 224 A+ + L+ G Sbjct: 564 VKASEKALSVLENMG 578 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 51/147 (34%), Gaps = 34/147 (23%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 + +A T H + ++YERLEFLGD L + S LF Sbjct: 127 PAYALEAFTKDSDNTEEHRVQQIHVQRGMGKNYERLEFLGDCFLKMATSISLFVQNPDDD 186 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRK----- 105 E + V L+ + A + +L +IR D RK Sbjct: 187 EFDFHVNRMCLICNKNLFNTALKKELYQYIRSRGFSRHTWYPDGLTLLHGRDHRKKVSAE 246 Query: 106 DVCSFMTSIQADVVESLIAALYLDGGI 132 + ADV E+LI A L GG+ Sbjct: 247 SKHALREKTVADVCEALIGASLLSGGL 273 >gi|302662009|ref|XP_003022664.1| hypothetical protein TRV_03185 [Trichophyton verrucosum HKI 0517] gi|291186623|gb|EFE42046.1| hypothetical protein TRV_03185 [Trichophyton verrucosum HKI 0517] Length = 1510 Score = 137 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 89/251 (35%), Gaps = 38/251 (15%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++ ++GY F LL A H S Y+RLEFLGD +L ++ LF + Sbjct: 1227 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1286 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------S 100 L+ ++VS + +A L+L + Sbjct: 1287 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1346 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154 + + D+VE+ + A+++D + F+ Y++ ++ Sbjct: 1347 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDTFAN 1406 Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV----VVEISGLAPAQGMDCSKRA 210 + T L FG T Y + P D TV V + A+G+ S R Sbjct: 1407 KHPITFLHTRLAVDFGCTF-YALKADEIPCVDGT-TVRALAAVCVHDDIVAEGVASSPRH 1464 Query: 211 AEQVAAAEVLK 221 A+ A+ L+ Sbjct: 1465 AKLKASQNALQ 1475 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 63/195 (32%), Gaps = 47/195 (24%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT S ++YERLEFLGD L + S LF Sbjct: 1031 PELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1090 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDLRKDVCSFMT 112 E + V+ L+ + A L++ FIR + K Sbjct: 1091 EYDYHVKRMLLICNQNLFNNAIILEIFKFIRSRSFSRRAWYPEGLTLLKGKDKKEGPNGP 1150 Query: 113 ------SIQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 ADV E+LI A L GG ++A V + + K+ D Sbjct: 1151 EHALADKTIADVCEALIGASLLAGGPDHKFDMATKAVTVFVNSDDHRVEKWA-DY----- 1204 Query: 163 EWAHAKFGVTPEYKV 177 ++ P Y+ Sbjct: 1205 ----SRLYSLPNYQT 1215 >gi|295132160|ref|YP_003582836.1| ribonuclease III [Zunongwangia profunda SM-A87] gi|294980175|gb|ADF50640.1| putative ribonuclease III [Zunongwangia profunda SM-A87] Length = 197 Score = 137 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 8/171 (4%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +YERLEFLGD +LG +I++ L+ EG L+ + +VS + +++ ++L+L F++ Sbjct: 10 NYERLEFLGDAMLGSVIASHLYQEVPEGDEGYLTKMRSKIVSRKHLNELGKDLNLIRFVK 69 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---R 155 S++ D F +I ++ E+L+ A+YLD G + F+ + + Sbjct: 70 --SNIPND--QFGVNIHGNIFEALVGAIYLDRGYKYCNRFIYNRVIEPYVDIETLEGRVI 125 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K+ L EW + Y+V +G D F V + I A+ Sbjct: 126 SYKSLLIEWCQKQKKE-FNYQVYEDTGRDELKHFAVKLWIDKKVIAKARAT 175 >gi|302511053|ref|XP_003017478.1| hypothetical protein ARB_04359 [Arthroderma benhamiae CBS 112371] gi|291181049|gb|EFE36833.1| hypothetical protein ARB_04359 [Arthroderma benhamiae CBS 112371] Length = 1510 Score = 137 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 89/251 (35%), Gaps = 38/251 (15%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++ ++GY F LL A H S Y+RLEFLGD +L ++ LF + Sbjct: 1227 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1286 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------S 100 L+ ++VS + +A L+L + Sbjct: 1287 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1346 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154 + + D+VE+ + A+++D + F+ Y++ ++ Sbjct: 1347 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDTFAN 1406 Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV----VVEISGLAPAQGMDCSKRA 210 + T L FG T Y + P D TV V + A+G+ S R Sbjct: 1407 KHPITFLHTRLAVDFGCTF-YALKADEIPCVDGT-TVRALAAVCVHDDIVAEGVASSPRH 1464 Query: 211 AEQVAAAEVLK 221 A+ A+ L+ Sbjct: 1465 AKLKASQNALQ 1475 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 63/195 (32%), Gaps = 47/195 (24%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT S ++YERLEFLGD L + S LF Sbjct: 1031 PELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1090 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDLRKDVCSFMT 112 E + V+ L+ + A L++ FIR + K Sbjct: 1091 EYDYHVKRMLLICNQNLFNNAIILEIFKFIRSRSFSRRAWYPEGLTLLKGKDKKEGPNGP 1150 Query: 113 ------SIQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 ADV E+LI A L GG ++A V + + K+ D Sbjct: 1151 EHALADKTIADVCEALIGASLLAGGPDHKFDMATKAVTVFVNSDDHRVEKWA-DY----- 1204 Query: 163 EWAHAKFGVTPEYKV 177 ++ P Y+ Sbjct: 1205 ----SRLYSLPNYQT 1215 >gi|242090101|ref|XP_002440883.1| hypothetical protein SORBIDRAFT_09g013160 [Sorghum bicolor] gi|241946168|gb|EES19313.1| hypothetical protein SORBIDRAFT_09g013160 [Sorghum bicolor] Length = 377 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 61/241 (25%), Positives = 100/241 (41%), Gaps = 32/241 (13%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E+ + Y F +R+LLE+ALTH S S SY+RLEF+GD LGL S L+ + Sbjct: 44 RVERLLRYQFCDRALLEEALTHQSFSDGAF-SYQRLEFVGDAALGLAFSNFLYLTNPTLG 102 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR---------VSSDLRK------------- 105 G LS + +S E ++VA DL +R V + Sbjct: 103 PGALSTLRAANISTEKLARVAVRHDLYPLLRRKCARLDLLVGQFIESVKQEVMHDLATAP 162 Query: 106 DVCSFM--TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQ 162 S + + AD+VE++ AA+Y+D ++ + V ++ + + + T L Sbjct: 163 YGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPVITAETVDEQPVTTLH 222 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E V +++ + G V V + G G K A+ AA + L + Sbjct: 223 ELCQKHGKVA-QFETWQKGGMT-----MVNVFVGGEMVGLGSSEQKVIAKLNAARDALGK 276 Query: 223 E 223 Sbjct: 277 L 277 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 14/132 (10%) Query: 94 ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 + + S +K + ++L L GG + + Sbjct: 251 GEMVGLGSSEQKVIAK-----LNAARDALGK---LIGG--AKQQVLINGIANGLVDEIVE 300 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS---GLAPAQGMDCSK-R 209 R+ K +L E K P +K+ GP H+ F V++ G G S+ + Sbjct: 301 LRECKQKLTEQCIGKHWPKPIFKLEKEGGPAHERNFVCSVQVDTKTGTFVTIGDPMSRVK 360 Query: 210 AAEQVAAAEVLK 221 AE AA ++++ Sbjct: 361 DAENSAAQKMVE 372 >gi|219558950|ref|ZP_03538026.1| ribonuclease III [Mycobacterium tuberculosis T17] gi|289571114|ref|ZP_06451341.1| ribonuclease III rnc [Mycobacterium tuberculosis T17] gi|289544868|gb|EFD48516.1| ribonuclease III rnc [Mycobacterium tuberculosis T17] Length = 139 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 6/130 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L +G + LL ALTH S ++ + ERLEFLGD +LGL I+ LF+ Sbjct: 8 LLDALGVDLPD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDR 66 Query: 67 KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ S+V+ + + VAR L L + + + +SI AD +ESL+ Sbjct: 67 SEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLL 126 Query: 124 AALYLDGGIE 133 A+YL G+E Sbjct: 127 GAIYLQHGME 136 >gi|307198394|gb|EFN79336.1| Endoribonuclease dcr-1 [Harpegnathos saltator] Length = 1479 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 49/215 (22%), Positives = 87/215 (40%), Gaps = 50/215 (23%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 ++EKR+GY F NR+ L +A TH S S + + Y+RLEFLGD +L LI+ ++ + Sbjct: 1278 SIEKRLGYKFNNRAYLLQAFTHPSYSVNRITDCYQRLEFLGDAVLDFLITCHIYEFCGNL 1337 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF--------------- 110 G L+ ++LV+ T + +A L + + + L + + F Sbjct: 1338 SPGALTDLRSALVNNITFACLAVRYGLHTCLLAYAPQLHEMINRFVKFQEDRNYAINDEL 1397 Query: 111 -----------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 + + D+ E+LI A+YLD +A + + + + +F Sbjct: 1398 LWVLLEEEDCNIAEYIDVPKVLGDLFETLIGAIYLDSNRNLAKVW-EMVYSFMHKEIDEF 1456 Query: 154 RRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 R+ K P +V + H Sbjct: 1457 SRNVPK-------------NPV-RVIYEHQDAHAK 1477 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + ERLE LGD L + S L++ F EG+L+ ++ + ++ Sbjct: 1068 NLERLETLGDSYLKFITSLFLYHTFPMLSEGQLTAIKGRIIGNRNLYYNGVNKGIPGRLK 1127 Query: 99 V 99 + Sbjct: 1128 I 1128 >gi|224613121|dbj|BAH24228.1| dsRNA-specific ribonuclease RNaseIII [Paulownia witches'-broom phytoplasma] Length = 157 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 3/141 (2%) Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 + + A+ ++L +++ + K+ SI AD E+L A+YLD G A Sbjct: 1 RSLTIYAQNIELQNYLLLGKGE-KNKDFNAKSIMADTFEALFGAIYLDLGYLTAKKVFHN 59 Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 L + D KT+LQE ++ +YK+ GP H +F V + Sbjct: 60 IVLPH-LAKTIYIIDFKTQLQEIVQSEKKA-IQYKIVQEQGPAHSKKFVAEVYLEKNLLG 117 Query: 202 QGMDCSKRAAEQVAAAEVLKR 222 G +K+AAEQ AA + L + Sbjct: 118 TGEGSTKKAAEQKAAHQALSK 138 >gi|302772092|ref|XP_002969464.1| hypothetical protein SELMODRAFT_91347 [Selaginella moellendorffii] gi|300162940|gb|EFJ29552.1| hypothetical protein SELMODRAFT_91347 [Selaginella moellendorffii] Length = 1255 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 50/252 (19%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M AL +LEK + Y F N++LL +A+TH+S + Y+RLEF+GD +L L++ LF Sbjct: 1005 MPALL--SLEKELCYTFQNKALLLEAITHAS-TPDTVFCYQRLEFIGDAVLDFLVTRHLF 1061 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS----------- 109 G LS ++ V+ + ++VA + L S++R S + + Sbjct: 1062 TSHPGLSPGLLSDLRSASVNNDCLARVAVKHRLHSYLRHGSAELRAKINSFLDVLDRDPE 1121 Query: 110 ----------FMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD-- 156 AD+VES+ A+ +D G + + V K + Sbjct: 1122 CSVMFGFKALSGPKALADIVESVAGAILVDSGFDFEKLWVVLKRLLSPFVTPATLSFHPV 1181 Query: 157 --------AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K+ EW + G T E + ++G RFT E+S + +K Sbjct: 1182 REFHELCSYKSWEFEWVQSSSGATAE--ILLKAGE---QRFT---EVSSI-------KNK 1226 Query: 209 RAAEQVAAAEVL 220 + A + A ++L Sbjct: 1227 KDARKDVAEKLL 1238 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 45/158 (28%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 SYE LE LGD +L ++ L+ + EGELS R + + T ++A DL ++R Sbjct: 829 SYEGLELLGDSVLKYAVTRKLYLLHSTMHEGELSDRRSHAICNSTLRKLAVAQDLPMYVR 888 Query: 99 ---------VSSDLRKDVCS------------------------------------FMTS 113 V + + + + Sbjct: 889 DEPFYPSYWVGAGMYRQRSRKCCCRLDNLVTKESSKPRPTDATYYVGKTCGQGHRWMCSK 948 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 +D +E+LI A + GG + A F+ SG Sbjct: 949 TTSDALEALIGAYTVGGGFDGALEFMKALQVDVDFDSG 986 >gi|296809942|ref|XP_002845309.1| dicer-like protein 1 [Arthroderma otae CBS 113480] gi|238842697|gb|EEQ32359.1| dicer-like protein 1 [Arthroderma otae CBS 113480] Length = 1521 Score = 135 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 88/251 (35%), Gaps = 38/251 (15%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64 + +E+++GY F LL A H S Y+RLEFLGD +L + LF + Sbjct: 1238 NQIEEKLGYRFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMACVNHLFTKYP 1297 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------S 100 L+ ++VS + +A L+L + Sbjct: 1298 DKDPQWLTEHKMAMVSNKFLGSLAVGLNLHVHLIHISNVLQGQITCYTEELQAMKMEMGG 1357 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154 + + D+VE+ + A+++D + F+ Y++ + Sbjct: 1358 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVIDDFFKRFIQHYFEDMTVYDTFAN 1417 Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV----VVEISGLAPAQGMDCSKRA 210 + T L FG T Y + P D T+ V + A+G+ S R Sbjct: 1418 KHPITFLHTRLAVDFGCTF-YALKADEIPCVDGT-TIRALAAVCVHNDIVAEGVATSPRH 1475 Query: 211 AEQVAAAEVLK 221 A+ A+ L+ Sbjct: 1476 AKLKASQNALQ 1486 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 33/147 (22%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT S ++YERLEFLGD L + S LF Sbjct: 1042 PELALEALTKDSENTEEHGLEQIRFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1101 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVC-- 108 E + V+ L+ + A L++ +IR D +++ Sbjct: 1102 EYDFHVKRMLLICNQNLFNNAIILEVFKYIRSKSFSRRGWYPEGLTLLKGKDKKENPGGP 1161 Query: 109 --SFMTSIQADVVESLIAALYLDGGIE 133 + ADV E+LI A L GG + Sbjct: 1162 THALADKSIADVCEALIGASLLAGGPD 1188 >gi|302755618|ref|XP_002961233.1| hypothetical protein SELMODRAFT_74321 [Selaginella moellendorffii] gi|300172172|gb|EFJ38772.1| hypothetical protein SELMODRAFT_74321 [Selaginella moellendorffii] Length = 1291 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 50/252 (19%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M AL +LEK + Y F N++LL +A+TH+S + Y+RLEF+GD +L L++ LF Sbjct: 1041 MPALL--SLEKELCYTFQNKALLLEAITHAS-TPDTVFCYQRLEFIGDAVLDFLVTRHLF 1097 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS----------- 109 G LS ++ V+ + ++VA + L S++R S + + Sbjct: 1098 TSHPGLSPGLLSDLRSASVNNDCLARVAVKHRLHSYLRHGSAELRAKITSFLDVLDRDPE 1157 Query: 110 ----------FMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD-- 156 AD+VES+ A+ +D G + + V K + Sbjct: 1158 CSVMFGFKALSGPKALADIVESVAGAILVDSGFDFEKLWVVLKRLLSPFVTPATLSFHPV 1217 Query: 157 --------AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K+ EW + G T E + ++G RFT E+S + +K Sbjct: 1218 REFHELCSYKSWEFEWVQSSSGATAE--ILLKAGE---QRFT---EVSSI-------KNK 1262 Query: 209 RAAEQVAAAEVL 220 + A + A ++L Sbjct: 1263 KDARKDVAEKLL 1274 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 45/158 (28%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 SYE LE LGD +L ++ L+ + EGELS R + + T ++A DL ++R Sbjct: 865 SYEGLELLGDSVLKYAVTRKLYLLHSTMHEGELSDRRSHAICNSTLRKLAVAQDLPMYVR 924 Query: 99 ---------VSSDLRKDVCS------------------------------------FMTS 113 V + + + + Sbjct: 925 DEPFYPSCWVGAGMYRQRSRKCCCRLDNLVTKESSKPRPTDATYYVGKTCGQGHRWMCSK 984 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 +D +E+LI A + GG + A F+ SG Sbjct: 985 TTSDALEALIGAYAVGGGFDGALEFMKALQVDVDFDSG 1022 >gi|222619725|gb|EEE55857.1| hypothetical protein OsJ_04485 [Oryza sativa Japonica Group] Length = 1839 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 104/243 (42%), Gaps = 33/243 (13%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE ++GY+F+ + LL +ALTH S + YERLEFLGD +L +L++ LFN Sbjct: 1175 FEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHK 1234 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102 EGEL+ ++ V+ E +QVA + + F++ SS Sbjct: 1235 DTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVE 1294 Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTEL 161 L D + D+VES+ A+ LD +++ + + + + EL Sbjct: 1295 LLSDGLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYREL 1354 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRF-TVVVEISGLAPAQGMDCSK--RAAEQVAAAE 218 EW Y V D T+ V++ + + SK + A+ A++ Sbjct: 1355 IEWCGKHG-----YFVGINCRDQGDTVVATLDVQLKEVLLVR-QGFSKKRKDAKAHASSL 1408 Query: 219 VLK 221 +LK Sbjct: 1409 LLK 1411 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 62/180 (34%), Gaps = 60/180 (33%) Query: 7 STLEKRIGYAFANRS--LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S L IGY+ +N S L+ +A+T ++ S S ERLE LGD +L Sbjct: 978 SQLRSEIGYSDSNISSFLILEAIT--TLRCSEDFSMERLELLGDSVLKY----------- 1024 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------------------- 98 A EG+LS ++ T ++ E ++ ++R Sbjct: 1025 -ADEGQLSSIRCHMICNATLYKLGIERNVQGYVRDAAFDPRRWLAPGQLSIRPSPCECPV 1083 Query: 99 ------------------VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + K + AD VE++I A Y GG+ A + Sbjct: 1084 KSEVVTDDIHIIDDKAIVLGKACDKGHRWMCSKTIADCVEAIIGAYYAGGGLRAAMAVLK 1143 >gi|218189575|gb|EEC72002.1| hypothetical protein OsI_04862 [Oryza sativa Indica Group] Length = 1858 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 104/243 (42%), Gaps = 33/243 (13%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE ++GY+F+ + LL +ALTH S + YERLEFLGD +L +L++ LFN Sbjct: 1175 FEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHK 1234 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102 EGEL+ ++ V+ E +QVA + + F++ SS Sbjct: 1235 DTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVE 1294 Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTEL 161 L D + D+VES+ A+ LD +++ + + + + EL Sbjct: 1295 LLSDGLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYREL 1354 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRF-TVVVEISGLAPAQGMDCSK--RAAEQVAAAE 218 EW Y V D T+ V++ + + SK + A+ A++ Sbjct: 1355 IEWCGKHG-----YFVGINCRDQGDTVVATLDVQLKEVLLVR-QGFSKKRKDAKAHASSL 1408 Query: 219 VLK 221 +LK Sbjct: 1409 LLK 1411 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 61/180 (33%), Gaps = 60/180 (33%) Query: 7 STLEKRIGYAFANRS--LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S L IGY+ +N S L+ +A+T ++ S S ERLE LGD +L Sbjct: 978 SQLRSEIGYSDSNISSFLILEAIT--TLRCSEDFSMERLELLGDSVLKY----------- 1024 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------------------- 98 A EG+LS ++ T ++ E ++ ++R Sbjct: 1025 -ADEGQLSSIRCHMICNATLYKLGIERNVQGYVRDAAFDPRRWLAPGQLSIRPSPCECPV 1083 Query: 99 ------------------VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + K + AD E++I A Y GG+ A + Sbjct: 1084 KSEVVTDDIHIIDDKAIVLGKACDKGHRWMCSKTIADCFEAIIGAYYAGGGLRAAMAVLK 1143 >gi|115441737|ref|NP_001045148.1| Os01g0909200 [Oryza sativa Japonica Group] gi|75321191|sp|Q5N870|DCL3A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3a; AltName: Full=Dicer-like protein 3a; Short=OsDCL3a gi|56785369|dbj|BAD82327.1| putative Endoribonuclease Dicer homolog [Oryza sativa Japonica Group] gi|113534679|dbj|BAF07062.1| Os01g0909200 [Oryza sativa Japonica Group] Length = 1651 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 104/243 (42%), Gaps = 33/243 (13%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE ++GY+F+ + LL +ALTH S + YERLEFLGD +L +L++ LFN Sbjct: 1241 FEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHK 1300 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102 EGEL+ ++ V+ E +QVA + + F++ SS Sbjct: 1301 DTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVE 1360 Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTEL 161 L D + D+VES+ A+ LD +++ + + + + EL Sbjct: 1361 LLSDGLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYREL 1420 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRF-TVVVEISGLAPAQGMDCSK--RAAEQVAAAE 218 EW Y V D T+ V++ + + SK + A+ A++ Sbjct: 1421 IEWCGKHG-----YFVGINCRDQGDTVVATLDVQLKEVLLVR-QGFSKKRKDAKAHASSL 1474 Query: 219 VLK 221 +LK Sbjct: 1475 LLK 1477 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 48/180 (26%) Query: 7 STLEKRIGYAFANRS--LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S L IGY+ +N S L+ +A+T ++ S S ERLE LGD +L +S LF F Sbjct: 1032 SQLRSEIGYSDSNISSFLILEAIT--TLRCSEDFSMERLELLGDSVLKYAVSCHLFLKFP 1089 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------------------- 98 + EG+LS ++ T ++ E ++ ++R Sbjct: 1090 NKDEGQLSSIRCHMICNATLYKLGIERNVQGYVRDAAFDPRRWLAPGQLSIRPSPCECPV 1149 Query: 99 ------------------VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + K + AD VE++I A Y GG+ A + Sbjct: 1150 KSEVVTDDIHIIDDKAIVLGKACDKGHRWMCSKTIADCVEAIIGAYYAGGGLRAAMAVLK 1209 >gi|261749614|ref|YP_003257300.1| ribonuclease III [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497707|gb|ACX84157.1| ribonuclease III [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 251 Score = 134 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 100/231 (43%), Gaps = 18/231 (7%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALT------HSSISHSYQESYERLEFLGDRILGLLI 55 +++ S L+K +G+ N LL+ ++ +Y ++RLEFLGD +L +I Sbjct: 14 NSILVSRLKKILGFCPKNLKLLKDVFIYSFSTKRKTLDKNYFLDFQRLEFLGDAVLNSII 73 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L KEGEL+ + +V + ++++++L LA + + +I Sbjct: 74 SHFLCEKLPEKKEGELTQVRSKIVCRKNLNEISKKLTLAEVF-----FQNNQPIISENIL 128 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD---AKTELQEWAHAKFGVT 172 + +E+LI +YL+ G + FV K + + + + K + EW+ + Sbjct: 129 GNTLEALIGFIYLEIGYQGCKNFVYKKILHYHVNITQLQNEISSYKVWVIEWSQKNKFII 188 Query: 173 --PEYKVTFRSGPD-HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219 ++ T + H + IS +G SK+ +E++AA Sbjct: 189 NFNTFRETKEEIENKHVITYFSEFTISRCGIKTEGRGPSKKKSEEMAAKAA 239 >gi|326533632|dbj|BAK05347.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 381 Score = 134 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 102/246 (41%), Gaps = 37/246 (15%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + +E+ + Y F +RSLL++ALTH S S SY+RLEF+GD LGL S L+ Sbjct: 44 ARVERLLQYRFRDRSLLDEALTHQSFSGGAGGAASYQRLEFVGDAALGLAFSNFLYLTNP 103 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLRKDVC 108 + G LS + +S E ++VA DL +R V +L D+ Sbjct: 104 TVGPGALSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIESVKQELEDDLG 163 Query: 109 --------SFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKT 159 + AD+VE++ AA+Y+D + + V ++ + + + + Sbjct: 164 ITPYGGSVFKAPKVLADIVEAIAAAVYVDCKFNIEELWKVTRFLFEPIVTAETIDEQPVS 223 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR--AAEQVAAA 217 L E ++K + G V V + G+ G S++ A+ A Sbjct: 224 TLHELCQKHGK-DIKFKSWQKGGTT-----VVNVFVGGVLV--GTGSSEQMGIAKLNATR 275 Query: 218 EVLKRE 223 + L + Sbjct: 276 DALSKL 281 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSK-RAAEQ 213 K +L + + K P +K+ GP HD F V++ G+ G S+ + AE Sbjct: 309 KKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAEN 368 Query: 214 VAAAEVLKRE 223 A ++L+ Sbjct: 369 SGAQKMLEHL 378 >gi|154283385|ref|XP_001542488.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150410668|gb|EDN06056.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 1359 Score = 134 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 94/240 (39%), Gaps = 41/240 (17%) Query: 12 RIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 R+GY F LL A TH+S + S Y+RLEFLGD +L ++ L++H+ Sbjct: 1102 RLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYPDRDPQ 1161 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI-------------- 114 L+ ++VS + V +L L + +S+ L + + I Sbjct: 1162 WLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSPDAW 1221 Query: 115 ---------QADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 D++E+ I A+++D EV F +Y KQ + DA Sbjct: 1222 TTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQYFEDMSIY--DA------ 1273 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K E ++ + +PR V + AQG+ S R A+ A+ L + Sbjct: 1274 -FANKHPTAGEVQMVDST----EPRIYAAVIVHDKFVAQGIASSVRYAKTKASDAALAKL 1328 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 49/143 (34%), Gaps = 32/143 (22%) Query: 21 SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +ALT H ++YERLEFLGD L + S LF E Sbjct: 903 HLALEALTKDSDNTEEHRKEQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDE 962 Query: 69 GELSVRFNSLVSAETCSQVARELDLASF---------------IRVSSDLRKDVCSFM-- 111 + V+ L+ + A L L F I++ + + Sbjct: 963 FDFHVKRMCLICNQNLFNTAVRLKLYEFVRTQGFSRRNWYPEGIKLLQGKAQPESAQNKQ 1022 Query: 112 ---TSIQADVVESLIAALYLDGG 131 AD+ E+LI A L GG Sbjct: 1023 ALGDKTIADICEALIGASLLSGG 1045 >gi|326497771|dbj|BAK05975.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 379 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 102/246 (41%), Gaps = 37/246 (15%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + +E+ + Y F +RSLL++ALTH S S SY+RLEF+GD LGL S L+ Sbjct: 42 ARVERLLQYRFRDRSLLDEALTHQSFSGGAGGAASYQRLEFVGDAALGLAFSNFLYLTNP 101 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLRKDVC 108 + G LS + +S E ++VA DL +R V +L D+ Sbjct: 102 TVGPGALSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIESVKQELEDDLG 161 Query: 109 --------SFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKT 159 + AD+VE++ AA+Y+D + + V ++ + + + + Sbjct: 162 ITPYGGSVFKAPKVLADIVEAIAAAVYVDCKFNIEELWKVTRFLFEPIVTAETIDEQPVS 221 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR--AAEQVAAA 217 L E ++K + G V V + G+ G S++ A+ A Sbjct: 222 TLHELCQKHGK-DIKFKSWQKGGTT-----VVNVFVGGVLV--GTGSSEQMGIAKLNATR 273 Query: 218 EVLKRE 223 + L + Sbjct: 274 DALSKL 279 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSK-RAAEQ 213 K +L + + K P +K+ GP HD F V++ G+ G S+ + AE Sbjct: 307 KKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAEN 366 Query: 214 VAAAEVLKRE 223 A ++L+ Sbjct: 367 SGAQKMLEHL 376 >gi|301107618|ref|XP_002902891.1| ribonuclease 3, putative [Phytophthora infestans T30-4] gi|262098009|gb|EEY56061.1| ribonuclease 3, putative [Phytophthora infestans T30-4] Length = 312 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 16/187 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQES-------YERLEFLGDRILGLLIS 56 L++RIG F + +LL+ ALTH ++ E LEFLGD +LG + Sbjct: 123 LEKLQERIGVKFQDVTLLQSALTHHGCLPTNPVPEDVPVVRLSNRSLEFLGDSLLGAAAA 182 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-----SFM 111 ++ +EG+LS ++LV+ +T S+++ +L + + + Sbjct: 183 GYVYQMLPRHQEGQLSRAKSALVNNDTLSKISADLGITDLLLWPPGFNEARGAPLVAKGR 242 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKF 169 +I A VESLIAA+YLD G+E A FV R+++ + ELQ + Sbjct: 243 VTIAAGSVESLIAAIYLDQGMETAMKFVTTQILPRSVEYATRDVIWEPIVELQNLLQGHY 302 Query: 170 GVTPEYK 176 P YK Sbjct: 303 YGQPVYK 309 >gi|312384317|gb|EFR29067.1| hypothetical protein AND_02261 [Anopheles darlingi] Length = 1651 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 33/168 (19%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62 + +E+ +GY F NR+ L +A TH++ + ++ +SYE+LEFLGD +L LI+ +F Sbjct: 1399 INPEKIERTVGYKFRNRTFLLQAFTHATYTTNTLTKSYEQLEFLGDAVLDFLITLYIFER 1458 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI---------RVSSDLRKDVCSFM-- 111 G+L+ ++LV+ T + V L +I ++ + Sbjct: 1459 NPHMSPGQLTDLRSALVNNVTLACVLVRFRLHHYILSQSPMLTDKIDKFVEVQGQKRNRI 1518 Query: 112 ---------------------TSIQADVVESLIAALYLDGGIEVAGTF 138 + DV E+LI A+YLD G ++ T+ Sbjct: 1519 GDWVRLLTEESETPLAEYVDVPKVLGDVFEALIGAIYLDSGCDLVTTW 1566 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALT S + ER E LGD L +S L + EG L+ +VS Sbjct: 1179 QALT--SKHAHDVFNLERFELLGDAFLKFSVSAFLLMRHVTWHEGYLTTCKGRMVSNRNL 1236 Query: 85 SQVARELDL 93 A + L Sbjct: 1237 LYCAMQYGL 1245 >gi|325091272|gb|EGC44582.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H88] Length = 1432 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 93/240 (38%), Gaps = 41/240 (17%) Query: 12 RIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 R+GY F LL A TH+S + S Y+RLEFLGD +L ++ L++H+ Sbjct: 1175 RLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYPDRDPQ 1234 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI-------------- 114 L+ ++VS + V +L L + +S+ L + + I Sbjct: 1235 WLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSPDAW 1294 Query: 115 ---------QADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 D++E+ I A+++D EV F +Y KQ + DA Sbjct: 1295 TTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQYFEDMSIY--DA------ 1346 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K E ++ + + R V + AQG+ S R A+ A+ L + Sbjct: 1347 -FANKHPTAGEVQMVDST----ETRIYAAVIVHDKFVAQGIASSVRYAKTKASEAALAKL 1401 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 49/143 (34%), Gaps = 32/143 (22%) Query: 21 SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +ALT H ++YERLEFLGD L + S LF E Sbjct: 976 HLALEALTKDSDNTEEHRKEQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDE 1035 Query: 69 GELSVRFNSLVSAETCSQVARELDLASF---------------IRVSSDLRKDVCSFM-- 111 + V+ L+ + A L L F I++ K + Sbjct: 1036 FDFHVKRMCLICNQNLFNTAVRLKLYEFVRTQGFSRRNWYPEGIKLLQGKAKSESAQNKQ 1095 Query: 112 ---TSIQADVVESLIAALYLDGG 131 AD+ E+LI A L GG Sbjct: 1096 ALGDKTIADICEALIGASLLSGG 1118 >gi|299754132|ref|XP_002911949.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130] gi|298410618|gb|EFI28455.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130] Length = 1457 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 104/248 (41%), Gaps = 45/248 (18%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + TL++R+GY F + S+L +A+TH S + + SY+RLEFLGD IL L++ L+ F Sbjct: 1121 FDTLQERLGYTFHSNSILVEAVTHPSFA-TDGPSYQRLEFLGDAILDLVVVHYLYEKFPE 1179 Query: 66 AKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSS------------------DLRKD 106 A +LS+ ++ A T + +A +EL + + +++ D Sbjct: 1180 ANSHQLSLLRAKVICAPTLAYLAIKELGVHKILLINNMGLYRAIEAYVPVFEDITDEEIA 1239 Query: 107 VCSFM---TSIQADVVESLIAALYLDGGIE------VAGTFVDKYWKQRALKSGKFRRDA 157 + +DV ESL+ A+ +D G V + K Q +L +D Sbjct: 1240 RSYYKFDPPKAISDVFESLVGAVLVDSGYNYDKTSAVVLDIMSKVLDQLSLDMA---KDP 1296 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT----VVVEISGL-APAQGMDCSKRAAE 212 + L EW + + +F VV+E+ G + S A+ Sbjct: 1297 VSLLLEWVAQHGCREISF--------SKNRKFNYDAGVVLEVHGKQVVGPIVASSPGVAK 1348 Query: 213 QVAAAEVL 220 +A+ L Sbjct: 1349 FIASERAL 1356 Score = 82.8 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 19/140 (13%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 + F +L ++LT + S +RLE LGD +L L + LFN + + EG+L+ Sbjct: 949 LRLPFIEDKILIESLTIP--AALLAFSNQRLETLGDAVLQLCTTVHLFNQYPNRHEGQLT 1006 Query: 73 VRFNSLVSAETCSQVARELDLASFI------------RVSSDLRKDVCSFMTSI-----Q 115 + VS + Q A E+ L +I + D + ++ Sbjct: 1007 TLRRATVSNKFLLQRALEMGLEEYITVEIASVARWRYILGEDADTAPPRSVRTLVPRRSL 1066 Query: 116 ADVVESLIAALYLDGGIEVA 135 D +E+L+ A +L GGI +A Sbjct: 1067 QDCMEALLGASFLQGGIPMA 1086 >gi|242059623|ref|XP_002458957.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor] gi|241930932|gb|EES04077.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor] Length = 1651 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 24/185 (12%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE ++GY F + LL +ALTH S S Y+RLEFLGD +L +LI+ LF Sbjct: 1245 LEAKLGYTFQVKGLLIEALTHPSQQESGATYCYQRLEFLGDAVLDILITRHLFLSHKDTD 1304 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSD----------------------LRK 105 EGEL+ ++ V+ E +QVA + +L F++ SS L Sbjct: 1305 EGELTDLRSASVNNENFAQVAVKHNLHQFLQHSSGFLQDQITEYVNSLEGSSMDRTSLLS 1364 Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEW 164 S + D+VES+ A+ +D +++ + V K + EL EW Sbjct: 1365 SGPSRGPKVLGDIVESIAGAILIDSKLDLDLVWRVFKPLLSPIVTPENLELPPFRELNEW 1424 Query: 165 AHAKF 169 Sbjct: 1425 CDKNG 1429 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 45/159 (28%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S ERLE LGD +L +S LF F + EG+LS R + T ++ E + +IR Sbjct: 1066 SMERLELLGDSVLKYAVSAHLFMTFLNKHEGQLSSRRQETICNATLYRLGTERRIQGYIR 1125 Query: 99 --------------------------------------------VSSDLRKDVCSFMTSI 114 + K + Sbjct: 1126 DAAFDPRRWLAPGQLSSRPCPCECPVKSEVITEDIHRIDDKSIIIGKACDKGHRWICSKT 1185 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 +D VE++I A Y++GG++ A V K+ + L+ + Sbjct: 1186 ISDCVEAIIGAYYVEGGLKAAFA-VLKWLQIETLEEEQI 1223 >gi|309800535|ref|ZP_07694686.1| ribonuclease III [Streptococcus infantis SK1302] gi|308115846|gb|EFO53371.1| ribonuclease III [Streptococcus infantis SK1302] Length = 115 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 1/109 (0%) Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTP 173 D E+ + AL LD I+ TF+ + + + +D KT LQE V Sbjct: 1 MGDAFEAFLGALLLDKDIKTVKTFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDI 60 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+V GP HD F V V + G + G SK+ AEQ AA +++ Sbjct: 61 RYQVISEIGPAHDKMFEVEVLVEGQSLGSGKGRSKKLAEQEAAKNAVEK 109 >gi|332029751|gb|EGI69620.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior] Length = 1257 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 34/165 (20%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 TLE +IGY F NR+ L +A TH S ++ E Y+RLEFLGD IL LI+ ++ + + Sbjct: 1003 TLESKIGYKFKNRAFLLQAFTHPSYTANGITECYQRLEFLGDAILDFLITCYIYENDVNL 1062 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLAS------------------------------- 95 G+L+ ++LV+ T + ++ L + Sbjct: 1063 SPGDLTDLRSALVNNITFACLSVRHGLHTALLAYAPKLHEIIDCFVRFQEERDYVVNDEL 1122 Query: 96 -FIRVSSDLRK-DVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 ++ + D + + D+ ESLI A+YLD G + + Sbjct: 1123 LYVLIEEDECNITEYVDVPKVLGDLFESLIGAIYLDSGKNLTKVW 1167 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + ERLE LGD L ++S L++ F + EG+L+ ++ + + I+ Sbjct: 794 NLERLETLGDSYLKFIVSLFLYHKFPTFNEGQLTALKGKMIGNRNLYYCGNKKGIPGRIK 853 >gi|157285011|gb|ABV31245.1| dicer-like 3 [Physcomitrella patens] Length = 1641 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 89/226 (39%), Gaps = 28/226 (12%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 EKRIGY F N L +ALTH S++ Y+RLEFLGD +L L++ LF Sbjct: 1348 EDLKAFEKRIGYTFKNIYLPLEALTHFSNMVGDQIRCYQRLEFLGDAVLDFLLTRHLFTS 1407 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD---------------- 106 ++ G L+ + V+ E ++VA + L ++R S Sbjct: 1408 HPTSTPGLLTSLRTASVNNERFARVAVKHRLHCYLRHGSGRLLHQIEEFVKSFEAADDDQ 1467 Query: 107 -------VCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAK 158 + D+VES+ A+ +D ++ + V + + Sbjct: 1468 KNSSFGLNGLEAPKVLGDLVESIAGAILVDTCFDLDKVWAVMMPLLEPIVTPATLDIHPV 1527 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 TEL+E +K + +Y V + + R V+IS +G Sbjct: 1528 TELEELCMSKGY-SIKYGVHKED--ECNSRAIYEVQISDELFFRGE 1570 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 KALT + + ++ + E LE GD L +S LF +A EG LS R + E Sbjct: 1143 KALTTTRCNENF--NMEALELFGDSFLKYAVSRKLFLESSTANEGVLSTRRIRSICNEAL 1200 Query: 85 SQVARELDLASFIR 98 ++A + L+++IR Sbjct: 1201 HKLAVDRGLSAYIR 1214 >gi|305354766|emb|CBL30926.1| Dicer protein [Echinococcus multilocularis] Length = 1981 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 67/288 (23%), Positives = 100/288 (34%), Gaps = 80/288 (27%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----------------SYERLEFLG 47 R+S LE+ IGY F NR LL +A THS+ + YERLEFLG Sbjct: 1695 RFSKLEEIIGYTFKNRRLLIEAFTHSTCRDLHGPPSDDDGGFHGSVTSISGGYERLEFLG 1754 Query: 48 DRILGLLISTLLFNHF--DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------ 99 D +L ++ LF G L+ ++LV+ +A L +F+R Sbjct: 1755 DAVLDYAVTRFLFTTDATARLSPGALTDLRSALVNNVVFGALAVRHGLHAFLRAAAPPLT 1814 Query: 100 ---------------------------------------SSDLRKDVCSFMTSIQADVVE 120 + R + + DV E Sbjct: 1815 RTMALFLRHHHDVVRGDLDVLIAPEVNACRENKGATASQAEGDRANEEVEVPKALGDVFE 1874 Query: 121 SLIAALYLDGG--IEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 SL A++LD G + ++R + S + L E PE +V Sbjct: 1875 SLAGAVFLDSGLCLNTLWRVFFPLLRERIERYSTCVAKSPVRRLLELC-------PE-RV 1926 Query: 178 TFRS---GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F PD R VVV ++G+ G+ + R A+ AA +R Sbjct: 1927 KFERPMVRPDGKMR--VVVRVAGIGRYVGVGRTYRLAKSAAADLAYRR 1972 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 + ERLE +GD L ++ LF + A EG LS + +V ++ E +L I Sbjct: 1520 NMERLETIGDSFLKFAVTMDLFLRYPEAHEGHLSSLRSQIVGNSNLYRLGCEKNLPGRI 1578 >gi|313236326|emb|CBY11646.1| unnamed protein product [Oikopleura dioica] Length = 1519 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 92/253 (36%), Gaps = 62/253 (24%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y EK+IGY F N+ L ++LTH+S + Y+RLEFLGD +L LI+ LF+H Sbjct: 1249 YGEFEKKIGYTFKNKGYLLQSLTHASYQYNQVTNCYQRLEFLGDAVLDFLITRHLFDHPT 1308 Query: 65 SA-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------- 110 GEL+ +LV+ + +A + D ++ + +V Sbjct: 1309 KRFSPGELTDLRAALVNNNIFAALAVKFDFHKYLYALTPDLHNVIRDYVLYCQTRQDVEG 1368 Query: 111 ----------------------------MTSIQADVVESLIAALYLDGGIE------VAG 136 + + D+ ES+ A+YLD G+ V Sbjct: 1369 MEAVLKRIRLEEEPEEEEGDHEDSEDIEVPKVLGDIYESVAGAIYLDSGMNLDAVWGVYR 1428 Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEI 195 + KY + ++ R EL E PE + D ++ V V I Sbjct: 1429 PMLQKYIDKYSINP---PRSPIRELLELEPETAKFSAPEKRA--------DGKYRVTVHI 1477 Query: 196 -SGLAPAQGMDCS 207 + G + Sbjct: 1478 ANNKGRFAGAGRN 1490 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 30/130 (23%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL-ASFI 97 + ERLE LGD L ++ L+ ++ EG+LS + VS ++ D+ + Sbjct: 1063 NLERLEMLGDCFLKYSVTVYLYCKYEHQHEGQLSFFRSKKVSNRNLFRLGVYNDIPGRMV 1122 Query: 98 RVSSDLRKDVCSFMT----------------------------SIQADVVESLIAALYLD 129 +++ SI AD +E+LI A Sbjct: 1123 AEQFMQNDTGGNWLPPGYFNKDHAALEKPLIYNHYSDQYLTDKSI-ADCMEALIGAYLKA 1181 Query: 130 GGIEVAGTFV 139 GIE F+ Sbjct: 1182 TGIEATQQFL 1191 >gi|50290469|ref|XP_447666.1| hypothetical protein [Candida glabrata CBS 138] gi|49526976|emb|CAG60603.1| unnamed protein product [Candida glabrata] Length = 734 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 98/236 (41%), Gaps = 31/236 (13%) Query: 16 AFANRSLLEKALTHSSISH---------SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 N ++ + H S + SYERLEFLGD ++ +++T+++ F + Sbjct: 423 EIKNEAIKARVFIHQSALSGQSYLTEEEKIKNSYERLEFLGDSVINSIMTTIIYKSFPNY 482 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS---DLRKDVCSFMTSIQADVVESLI 123 G+++ LVS + A L + + + + S + I AD+ E+ + Sbjct: 483 DAGQMTRLRVLLVSNRRLEKWAYLYGLQKHLLIRKSILNEMLNSGSKVYKIYADLFEAYV 542 Query: 124 AALYLD---GGIEVAGTFVDKYWKQRALKS-----------GKFRRDAKTELQEWAHAKF 169 L D G + ++ + A+K+ +AKT+L E A Sbjct: 543 GGLVEDDPTGNMPKIRDWLSTL-AEEAIKTISDKNALPGTDNNINMNAKTQL-EKLLAPV 600 Query: 170 GVTPEYKVTFRSGPDHDPRFTV-VVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +Y +T R P FTV + +G G + + AEQ+AA +L+++ Sbjct: 601 GLEAQYVITNRRSSKKSP-FTVIECRVANGQVTGIGKGRNYKIAEQIAAGNILEKK 655 >gi|115292171|emb|CAK32533.1| putative dicer-like protein [Mucor circinelloides] Length = 1529 Score = 132 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 22/173 (12%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + + + +GY F N +L+ +ALTH+S+++S Y+RLEFLGD +L ++ LF + Sbjct: 1249 IDIKKVSRILGYEFQNEALIAEALTHASVTNSSVPCYQRLEFLGDAVLDFCVTNYLFEKY 1308 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------SSDL-- 103 +A G L S V+ + S + +L L IR S D Sbjct: 1309 HTAPPGTLHDLRKSSVNNDILSVLCIQLGLHVHIRHFSTTFPSAVKQFQELVVASQDEKG 1368 Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFR 154 + + +DVVESLI A+++D G + D+ K Sbjct: 1369 EYWLNFNPPKVLSDVVESLIGAVFVDAGFNLDPVLGLFDRLLKPLLDDHISIE 1421 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 23/133 (17%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 + +L +A T SS ++ Y+RLEFLGD +L + ST +F + E EL+ Sbjct: 1060 KDPYML-EAFTASSAG--LEKDYQRLEFLGDSVLKFITSTYVFVTLPISNEFELTESRMR 1116 Query: 78 LVSAETCSQVARELDLASFI----------RVSSDLRKDVCSFM----------TSIQAD 117 ++S + A +L L +I R + L KD + M AD Sbjct: 1117 MISNTALFKSAIQLRLYEYICSQNLPRRFYRPPNYLCKDDSAEMIKSLTYHKLSDKTLAD 1176 Query: 118 VVESLIAALYLDG 130 VVES + A YL Sbjct: 1177 VVESTLGASYLSC 1189 >gi|158706454|sp|Q0CW42|DCL1_ASPTN RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent helicase dcl1 Length = 1519 Score = 132 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 92/249 (36%), Gaps = 37/249 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+++GY F LL A TH S + + Y+ LEFLGD +L ++ LF F Sbjct: 1237 RVEEKLGYHFRYPRLLHSAFTHPSYPSAWARVPCYQSLEFLGDALLDMVCVEDLFRRFPD 1296 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFM------------- 111 L+ ++VS + +A +L L + + SS L+ + + Sbjct: 1297 RDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLSYFSSALQSQITHYAEEAQAAASQSDVA 1356 Query: 112 ----------TSI-QADVVESLIAALYLDGG--IEVAGTF----VDKYWKQRALKSGKFR 154 + D+VE+ + A+++D E F + Y+ A+ Sbjct: 1357 VDYWTLTQDPPKVCLPDMVEAYLGAVFVDSNFRFEEVEVFFQQHIKPYFHDMAIYDTFAN 1416 Query: 155 RDAKTELQEWAHAKFGVTPEYKVT--FRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAA 211 R T L ++G Y + G D D V + G+ S R A Sbjct: 1417 RHPTTFLHNKLTNEYGCL-NYCLKAGEIPGADGDASTVLAAVIVHDTILTTGVASSGRYA 1475 Query: 212 EQVAAAEVL 220 + A+ L Sbjct: 1476 KVKASENAL 1484 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 63/191 (32%), Gaps = 48/191 (25%) Query: 11 KRIGYAFANRSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTL 58 K++G + +ALT H S + ++YERLEFLGD L + S Sbjct: 1031 KKLGLEIS-LEYALEALTKDSDNTHEHRSQQVHMQRGMGKNYERLEFLGDCFLKMATSIS 1089 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-----------------SS 101 LFN E + V L+ A + +L FIR Sbjct: 1090 LFNQHPDDNEFDYHVNRMCLICNRNLFNSAVKKELYQFIRSRGFSRDTWYPEGLTLLQGR 1149 Query: 102 DLRKDVCSFM-----TSIQADVVESLIAALYL--------DGGIEVAGTFVDKYWKQRAL 148 D K + S ADV E+LI A L D G+ VD Sbjct: 1150 DHSKKIGSESKHALAEKTIADVCEALIGAALLTPGPQHRFDMGVRAVSAVVDS-----NE 1204 Query: 149 KSGKFRRDAKT 159 + RD + Sbjct: 1205 HNAASWRDYIS 1215 >gi|188593364|emb|CAO78751.1| Oikopleura cytoplasmic RNAse III enzyme Dicer [Oikopleura dioica] Length = 1814 Score = 132 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 92/253 (36%), Gaps = 62/253 (24%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y EK+IGY F N+ L ++LTH+S + Y+RLEFLGD +L LI+ LF+H Sbjct: 1544 YGEFEKKIGYTFKNKGYLLQSLTHASYQYNQVTNCYQRLEFLGDAVLDFLITRHLFDHPT 1603 Query: 65 SA-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------- 110 GEL+ +LV+ + +A + D ++ + +V Sbjct: 1604 KRFSPGELTDLRAALVNNNIFAALAVKFDFHKYLYALTPDLHNVIRDYVLYCQTRQDVEG 1663 Query: 111 ----------------------------MTSIQADVVESLIAALYLDGGIE------VAG 136 + + D+ ES+ A+YLD G+ V Sbjct: 1664 MEAVLKRIRLEEEPEEEEGDHEDSEDIEVPKVLGDIYESVAGAIYLDSGMNLDAVWGVYR 1723 Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEI 195 + KY + ++ R EL E PE + D ++ V V I Sbjct: 1724 PMLQKYIDKYSINP---PRSPIRELLELEPETAKFSAPEKRA--------DGKYRVTVHI 1772 Query: 196 -SGLAPAQGMDCS 207 + G + Sbjct: 1773 ANNKGRFAGAGRN 1785 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 27/55 (49%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 + ERLE LGD L ++ L+ ++ EG+LS + VS ++ D+ Sbjct: 1308 NLERLEMLGDCFLKYSVTVYLYCKYEHQHEGQLSFFRSKKVSNRNLFRLGVYNDI 1362 >gi|226294068|gb|EEH49488.1| Dicer [Paracoccidioides brasiliensis Pb18] Length = 1423 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 86/241 (35%), Gaps = 40/241 (16%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 R+GY F LL A TH+S + + Y+RLEFLGD +L ++ L++ + Sbjct: 1145 DRLGYRFKYPRLLSSAFTHASYPTGWSKVPCYQRLEFLGDSLLDMVCVEHLYHKYPDRDP 1204 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM---------------- 111 L+ ++VS + VA +L L + S L + + Sbjct: 1205 QWLTEHKMAMVSNKFLGAVAVKLGLHRHLLYFSKALLGQITRYAEEIEATETESIDSPDF 1264 Query: 112 -------TSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 D++E+ I A+++D EV F + K+ + Sbjct: 1265 WTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQQCLKKYFEDMSIYD-------- 1316 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 A T +V +H R V I A+G+ S A+ A+ L + Sbjct: 1317 --TFANKHPTASGEVDSVDAAEH--RVLAAVIIHDEFVAEGIASSAGYAKVKASENALAK 1372 Query: 223 E 223 Sbjct: 1373 L 1373 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 54/163 (33%), Gaps = 36/163 (22%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT H + ++YERLEFLGD L + S LF Sbjct: 946 PELALEALTKDSDNTEEHRAEQIHFQRGMGKNYERLEFLGDCFLKMSTSISLFAMNADDD 1005 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASF---------------IRVSSDLRKDVCSFMT 112 E + V+ L+ + A L + F I++ K + Sbjct: 1006 EFDFHVKRMCLICNQNLFNTAMSLGIYEFVRTQGFSRRNWYPEGIKLLQGKAKSETAENK 1065 Query: 113 SIQ-----ADVVESLIAALYLDGG----IEVAGTFVDKYWKQR 146 AD+ E+LI A L GG + A V + Sbjct: 1066 HSLADKSIADICEALIGASLLSGGRVHRFDTAVKAVTAFVNSE 1108 >gi|225684422|gb|EEH22706.1| dicer [Paracoccidioides brasiliensis Pb03] Length = 1469 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 86/241 (35%), Gaps = 40/241 (16%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 R+GY F LL A TH+S + + Y+RLEFLGD +L ++ L++ + Sbjct: 1206 DRLGYRFKYPRLLSSAFTHASYPTGWSKVPCYQRLEFLGDSLLDMVCVEHLYHKYPDRDP 1265 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM---------------- 111 L+ ++VS + VA +L L + S L + + Sbjct: 1266 QWLTEHKMAMVSNKFLGAVAVKLGLHRHLLYFSKALLGQITRYAEEIEATETESIDSPDF 1325 Query: 112 -------TSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 D++E+ I A+++D EV F + K+ + Sbjct: 1326 WTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQQCLKKYFEDMSIYD-------- 1377 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 A T +V +H R V I A+G+ S A+ A+ L + Sbjct: 1378 --TFANKHPTASGEVDSVDAAEH--RVLAAVIIHDEFVAEGIASSAGYAKVKASENALSK 1433 Query: 223 E 223 Sbjct: 1434 L 1434 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 50/144 (34%), Gaps = 32/144 (22%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT H + ++YERLEFLGD L + S LF Sbjct: 1007 PELALEALTKDSDNTEEHRAEQIHFQRGMGKNYERLEFLGDCFLKMSTSISLFAMNADDD 1066 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASF---------------IRVSSDLRKDVCSFMT 112 E + V+ L+ + A L + F I++ K + Sbjct: 1067 EFDFHVKRMCLICNQNLFNTAMSLGIYEFVRTQGFSRRNWYPEGIKLLQGKAKSETAENK 1126 Query: 113 SIQ-----ADVVESLIAALYLDGG 131 AD+ E+LI A L GG Sbjct: 1127 HSLADKSIADICEALIGASLLSGG 1150 >gi|156371137|ref|XP_001628622.1| predicted protein [Nematostella vectensis] gi|156215603|gb|EDO36559.1| predicted protein [Nematostella vectensis] Length = 261 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 96/267 (35%), Gaps = 66/267 (24%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFN 61 + +E +GY F +R +L +ALTH+S +Y SYE+LEFLGD +L L++ + Sbjct: 5 ELALVEASLGYTFRDRDILLQALTHTSYPRAYSSVNSSYEQLEFLGDALLDYLVTRHVLQ 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----------------RVSSDLRK 105 F G ++ +++V+ + + + + D + R+S K Sbjct: 65 RFPRLSPGAITDLRSAVVNNYSLACLTIQRDFHKHMRSMSMALFKVVRRFVRRLSEIEEK 124 Query: 106 D---------------VCS--FMTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQR 146 + + + D+ E+L+ ALY+D G E+A + + Sbjct: 125 ETRPDQLLLTTVEDGRGGEAIEVPKVLGDLFEALLGALYVDCGRDEELAWSVIYPLL--- 181 Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT-----------VVVEI 195 T + E ++P ++ FT + + Sbjct: 182 ------------TPIIEHYSVHLPISPTRQLVEMM--PGAATFTCLSQNVIGHHACELVV 227 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G G + + A AA L R Sbjct: 228 KGYGRFMGTGRNAQIARSTAAQHALAR 254 >gi|158706452|sp|A2RAF3|DCL1_ASPNC RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent helicase dcl1 Length = 1525 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 96/248 (38%), Gaps = 36/248 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65 +E+++ Y F +LL A TH S ++ + Y+RLEFLGD ++ ++ LF F Sbjct: 1245 KIEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPD 1304 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------SSDLRK-- 105 L+ ++VS + +A +L L + ++ + + Sbjct: 1305 RDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGA 1364 Query: 106 ----DVCSFMTSIQADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFRR 155 V D+VE+ + A+++D EV F + +++ A+ + Sbjct: 1365 VDYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIKPFFEDMAIYDTFANK 1424 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGP--DHDPR-FTVVVEISGLAPAQGMDCSKRAAE 212 T L +FG Y + P D P V + + A+G S R A+ Sbjct: 1425 HPTTFLHNRLTNEFGC-VNYCLKAGEMPSIDGAPAGVLAAVIVHDVVIAEGTATSGRYAK 1483 Query: 213 QVAAAEVL 220 A+ + L Sbjct: 1484 VKASEKAL 1491 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 63/187 (33%), Gaps = 40/187 (21%) Query: 11 KRIGYAFANRSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTL 58 + + + L +A T H + + +YERLEFLGD L + S Sbjct: 1039 ESLNFTVK-LDLALEAFTKDSDNTDEHRAQQIHVQRGMGRNYERLEFLGDCFLKMATSIA 1097 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDL 103 LF E + V L+ + A + ++ +IR + Sbjct: 1098 LFTQNPDDDEFDYHVNRMCLICNKNLFNAAVDKEIYKYIRSRGFSRHTWYPEGLKLLQGK 1157 Query: 104 RKDVCSFMTS-------IQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGK 152 + S ADV E+LI A L GG ++A V + K+ + Sbjct: 1158 DHSRKATTESKHALAEKTIADVCEALIGAALLSGGPDHRFDMAVKAVTTLVNSPSHKAER 1217 Query: 153 FRRDAKT 159 +D + Sbjct: 1218 -WKDYIS 1223 >gi|317037196|ref|XP_001398755.2| dicer-like protein 1 [Aspergillus niger CBS 513.88] Length = 1493 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 96/248 (38%), Gaps = 36/248 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65 +E+++ Y F +LL A TH S ++ + Y+RLEFLGD ++ ++ LF F Sbjct: 1213 KIEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPD 1272 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------SSDLRK-- 105 L+ ++VS + +A +L L + ++ + + Sbjct: 1273 RDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGA 1332 Query: 106 ----DVCSFMTSIQADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFRR 155 V D+VE+ + A+++D EV F + +++ A+ + Sbjct: 1333 VDYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIKPFFEDMAIYDTFANK 1392 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGP--DHDPR-FTVVVEISGLAPAQGMDCSKRAAE 212 T L +FG Y + P D P V + + A+G S R A+ Sbjct: 1393 HPTTFLHNRLTNEFGC-VNYCLKAGEMPSIDGAPAGVLAAVIVHDVVIAEGTATSGRYAK 1451 Query: 213 QVAAAEVL 220 A+ + L Sbjct: 1452 VKASEKAL 1459 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 63/187 (33%), Gaps = 40/187 (21%) Query: 11 KRIGYAFANRSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTL 58 + + + L +A T H + + +YERLEFLGD L + S Sbjct: 1007 ESLNFTVK-LDLALEAFTKDSDNTDEHRAQQIHVQRGMGRNYERLEFLGDCFLKMATSIA 1065 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDL 103 LF E + V L+ + A + ++ +IR + Sbjct: 1066 LFTQNPDDDEFDYHVNRMCLICNKNLFNAAVDKEIYKYIRSRGFSRHTWYPEGLKLLQGK 1125 Query: 104 RKDVCSFMTS-------IQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGK 152 + S ADV E+LI A L GG ++A V + K+ + Sbjct: 1126 DHSRKATTESKHALAEKTIADVCEALIGAALLSGGPDHRFDMAVKAVTTLVNSPSHKAER 1185 Query: 153 FRRDAKT 159 +D + Sbjct: 1186 -WKDYIS 1191 >gi|224141703|ref|XP_002324204.1| dicer-like protein [Populus trichocarpa] gi|222865638|gb|EEF02769.1| dicer-like protein [Populus trichocarpa] Length = 1492 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 20/235 (8%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63 +LE ++GY F + +L++A+TH+SI Y+RLEFLGD +L LLI+ L+ Sbjct: 1121 EIKSLESKLGYTFGVKFVLQEAMTHASIQEQGVTYCYQRLEFLGDSVLDLLITWHLYQSH 1180 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL-------------RKDVCSF 110 GEL+ ++ V+ + +QVA + +L + + S L D + Sbjct: 1181 TDVDPGELTDLRSASVNNDNFAQVAVKQNLYTHLLHCSTLLQSQITEYVNSFHESDQGTK 1240 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 D++ES+ AL +D + G + + K + K EL E + Sbjct: 1241 APKALGDLIESIAGALLIDTKFNLDGVWRIFKPLLSPIVTPEKLELPPLRELVELCDS-I 1299 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 GV + K T ++ H + V++ +G + +++AA+ AA+ +LK+ Sbjct: 1300 GVFVKEKCTKKAEMVHAQLW---VQLDNELLSGEGYEKNRKAAKGKAASCLLKKL 1351 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 61/169 (36%), Gaps = 49/169 (28%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 SL+ +A+T ++ S ERLE LGD +L +S LF + + EG+LS + V Sbjct: 927 SLILEAIT--TLRCCESFSMERLELLGDSVLKYAVSCHLFLKYPNKHEGQLSSWRSGAVC 984 Query: 81 AETCSQVARELDLASFI------------------------------------------- 97 T ++ + + +I Sbjct: 985 NSTLHKLGTDCKVQGYILDSAFDPRRWAAPGQKSVRTPAPCKCGVDTLEVPLDRKFQTES 1044 Query: 98 ---RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 +V + +D VES+I A Y+ GG+ +A V K++ Sbjct: 1045 AIVKVGKPCDSGHRWMGSKTISDCVESVIGAYYVSGGL-IAAIHVMKWF 1092 >gi|320590575|gb|EFX03018.1| rnase3 domain containing protein [Grosmannia clavigera kw1407] Length = 1246 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 61/268 (22%), Positives = 102/268 (38%), Gaps = 54/268 (20%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ K +GY F LL A TH S + SY+RLEFLGD +L + I LF+ F + Sbjct: 945 SIAKDLGYQFRFPRLLRSAFTHPSYPRIYENLPSYQRLEFLGDALLDMAIVDYLFHKFSN 1004 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL-RKDVCSFMTSI---------- 114 L+ ++VS + + ++ L I S RK + ++T + Sbjct: 1005 KDPQWLTEHKMAMVSNQFLAFLSVSLGFHRHILSFSGEMRKQILEYVTKVEEERVRAESE 1064 Query: 115 -------------------------QADVVESLIAALYLDGGIE---VAGTF----VDKY 142 ADV+E+ + AL++D + F V Y Sbjct: 1065 AVEAGRPASEFARDYWVHVTHPPKALADVLEAYVGALFVDSEYDYHGTVLKFFNTHVQPY 1124 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP----RFTVVV----E 194 +K +L + T + +FG +++V + PD + F V Sbjct: 1125 FKDMSLYDTFANKHPVTFAVKMLSQRFGCR-DWRVIVQEIPDTEGEGCVTFATKVAAGFL 1183 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + G G+ S R A+ AA + L + Sbjct: 1184 VHGQVVGHGIAESGRYAKIGAAKKALAK 1211 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 + +YERLE LGD L L S LF E E V+ ++ A + Sbjct: 750 NFQAGMGRNYERLELLGDSFLKLATSIALFTLVPDKDEFEYHVQRMCMICNRNLFNNALD 809 Query: 91 LDLASFIR 98 + L +IR Sbjct: 810 MKLEEYIR 817 >gi|121713724|ref|XP_001274473.1| RNase3 domain protein [Aspergillus clavatus NRRL 1] gi|119402626|gb|EAW13047.1| RNase3 domain protein [Aspergillus clavatus NRRL 1] Length = 1552 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 96/249 (38%), Gaps = 37/249 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHFD 64 +E+++GY F LL A+TH S + Y+RLEFLGD +L ++ LF+ F Sbjct: 1270 QVEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRVPCYQRLEFLGDSLLDMVCVEDLFHRFP 1329 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI--------- 114 L+ ++VS + +A +L I+ S+ L+ + ++ I Sbjct: 1330 DRDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYVEEIETAEAESEG 1389 Query: 115 --------------QADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFR 154 D+VE+ + A+++D EV F + Y++ ++ Sbjct: 1390 AVDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSIYDTFAN 1449 Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAA 211 + T L +FG T Y + P D V + ++ S R A Sbjct: 1450 KHPTTFLHNRLANEFGCT-NYCLKAGEMPAIDGMPAGVLAAVIVHNSVVSEATASSSRYA 1508 Query: 212 EQVAAAEVL 220 + A+ L Sbjct: 1509 KIRASERAL 1517 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 44/124 (35%), Gaps = 22/124 (17%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 ++YERLEFLGD L + S LF E + V L+ + A++ Sbjct: 1096 FQRGMGKNYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNTAKKR 1155 Query: 92 DLASFIRVSSDLRK----------DVCSFMTSIQ------------ADVVESLIAALYLD 129 + +IR S R + ADV E+LI A L Sbjct: 1156 QIYRYIRSRSFSRHVWYPDGLTLLQGKDHSKKMLSQAKHALGEKTIADVCEALIGACLLS 1215 Query: 130 GGIE 133 GG E Sbjct: 1216 GGPE 1219 >gi|158706457|sp|A1CBC9|DCL1_ASPCL RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent helicase dcl1 Length = 1534 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 96/249 (38%), Gaps = 37/249 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHFD 64 +E+++GY F LL A+TH S + Y+RLEFLGD +L ++ LF+ F Sbjct: 1252 QVEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRVPCYQRLEFLGDSLLDMVCVEDLFHRFP 1311 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI--------- 114 L+ ++VS + +A +L I+ S+ L+ + ++ I Sbjct: 1312 DRDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYVEEIETAEAESEG 1371 Query: 115 --------------QADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFR 154 D+VE+ + A+++D EV F + Y++ ++ Sbjct: 1372 AVDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSIYDTFAN 1431 Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAA 211 + T L +FG T Y + P D V + ++ S R A Sbjct: 1432 KHPTTFLHNRLANEFGCT-NYCLKAGEMPAIDGMPAGVLAAVIVHNSVVSEATASSSRYA 1490 Query: 212 EQVAAAEVL 220 + A+ L Sbjct: 1491 KIRASERAL 1499 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 44/124 (35%), Gaps = 22/124 (17%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 ++YERLEFLGD L + S LF E + V L+ + A++ Sbjct: 1078 FQRGMGKNYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNTAKKR 1137 Query: 92 DLASFIRVSSDLRK----------DVCSFMTSIQ------------ADVVESLIAALYLD 129 + +IR S R + ADV E+LI A L Sbjct: 1138 QIYRYIRSRSFSRHVWYPDGLTLLQGKDHSKKMLSQAKHALGEKTIADVCEALIGACLLS 1197 Query: 130 GGIE 133 GG E Sbjct: 1198 GGPE 1201 >gi|302693114|ref|XP_003036236.1| hypothetical protein SCHCODRAFT_31237 [Schizophyllum commune H4-8] gi|300109932|gb|EFJ01334.1| hypothetical protein SCHCODRAFT_31237 [Schizophyllum commune H4-8] Length = 1342 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 100/246 (40%), Gaps = 44/246 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 +S L+ ++GY F + LL +ALTHSS + SYERLEFLGD ++ L + L+ F Sbjct: 1086 FSELQAKLGYTFRDGGLLCEALTHSSFASLDSYGSYERLEFLGDAVINLAVVDYLYRKFP 1145 Query: 65 SAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCS-------------- 109 A +LS+ V + S ++ + L L + V++ + Sbjct: 1146 DANSDQLSLPRARAVCNQALSALSVKHLQLHKSVLVNNVELSIAINKHAPILEDKPYPEI 1205 Query: 110 -------FMTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALK-SGKFRRDAKT 159 + +D+ ES++ A+++D G E+ V++ + + S RD + Sbjct: 1206 LVKGWKLDPPKVLSDIFESIVGAVFVDTGYDYEITAAVVEQAMEGLLVHLSPAMPRDPVS 1265 Query: 160 ELQEWAHA-KFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDC--------SKR 209 EL W E++ R PD + + + G A S++ Sbjct: 1266 ELIIWVAKSTCREQIEFRFVRRKQYPDG-----IAIYLHGTLLA---GPITTMNHLVSRK 1317 Query: 210 AAEQVA 215 A + A Sbjct: 1318 LASERA 1323 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 16/137 (11%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +G + R LL +ALT + + +RLE LGD +L L + LFN + EG+L+ Sbjct: 919 LGLPYIERDLLIQALTLPCAGMPF--NNQRLETLGDAVLELSTTVHLFNKYPHRHEGQLT 976 Query: 73 VRFNSLVSAETCSQVARELDLASFI-----------RVSSDLRKDVCSFM---TSIQADV 118 +S + ARE+ L F+ V C+ D Sbjct: 977 PLRQICISNKCLLTRAREVQLERFLTSETHSLSIWDYVEDSEVPARCARRLFPRRSLQDC 1036 Query: 119 VESLIAALYLDGGIEVA 135 +E+++ A YL GGI+ A Sbjct: 1037 MEAILGASYLTGGIDTA 1053 >gi|315044595|ref|XP_003171673.1| hypothetical protein MGYG_06219 [Arthroderma gypseum CBS 118893] gi|311344016|gb|EFR03219.1| hypothetical protein MGYG_06219 [Arthroderma gypseum CBS 118893] Length = 1518 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 89/251 (35%), Gaps = 38/251 (15%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++ ++GY F LL A H S Y+RLEFLGD +L ++ LF + Sbjct: 1236 NQIKSKLGYCFRYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------S 100 L+ ++VS + +A L+L + Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154 + + D+VE+ + A+++D + F+ Y++ ++ Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAMFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDTFAN 1415 Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV----VVEISGLAPAQGMDCSKRA 210 + T L FG T Y + P D TV V + A+G+ S R Sbjct: 1416 KHPITFLHTRLAVDFGCTF-YALKADEIPCVDGT-TVRALAAVCVHDDIVAEGVAISPRH 1473 Query: 211 AEQVAAAEVLK 221 A+ A+ L+ Sbjct: 1474 AKLKASQNALQ 1484 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 63/195 (32%), Gaps = 47/195 (24%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT S ++YERLEFLGD L + S LF Sbjct: 1040 PELALEALTKDSENTEDYGMEQIKFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1099 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDLRKDVCSFMT 112 E + V+ L+ + A L++ FIR + K Sbjct: 1100 EYDYHVKRMLLICNQNLFNNAIILEIFKFIRSRSFSRRAWYPEGLTLLKGKDKKEGPNGP 1159 Query: 113 ------SIQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 ADV E+LI A L GG ++A V + + ++ D Sbjct: 1160 EHALADKTIADVCEALIGASLLAGGPDHKFDMATKAVTVFVNSDDHRVERWA-DY----- 1213 Query: 163 EWAHAKFGVTPEYKV 177 +K P Y+ Sbjct: 1214 ----SKLYSLPSYQT 1224 >gi|217077865|ref|YP_002335583.1| ribonuclease III [Thermosipho africanus TCF52B] gi|217037720|gb|ACJ76242.1| ribonuclease III [Thermosipho africanus TCF52B] Length = 159 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 9/157 (5%) Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 ++ ++ S + ++ R++ L ++I + K + SI ADVVE+L+AA+Y+D Sbjct: 1 MAQIKAAVASEDILYEIGRDIGLENYIFLGKGELKSGGKYKKSIIADVVEALVAAIYVDC 60 Query: 131 --GIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + V +K+ SGK D KT+LQE +F P Y + Sbjct: 61 KKDLNVLENVFHDTFKRYIEIFFSGKRIFDYKTKLQEITQDRFKQLPVYDTVSQK----- 115 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F + I G ++ SK+ +E++AA ++ Sbjct: 116 NKFITTLYIDGKIYSKAEGFSKKESEKLAAKIAYEKL 152 >gi|328849595|gb|EGF98772.1| hypothetical protein MELLADRAFT_79606 [Melampsora larici-populina 98AG31] Length = 1540 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 102/259 (39%), Gaps = 42/259 (16%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 ++ L+ +IGY F LL +ALTH S YER E+LGD I+ L I+ + F Sbjct: 1106 SHTALQHKIGYEFKQPLLLMQALTHRSADSFLTNCYEREEWLGDAIVDLWITEHCYRRFS 1165 Query: 65 SAKEGELSVRFNSLVSAETCSQVA-RELDLASFIRV-SSDLRKD---------------- 106 + +L+ SLV+ + ++ ++L L I+ S K Sbjct: 1166 DSTAAQLTFTRASLVTNASLGYLSLKKLGLHKMIQHDSRHFEKACDDALRDIESFIEVGS 1225 Query: 107 ---------VCSFMTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALKSGKFR- 154 + I D +E+++ A+++D G + VA +DK ++ + + Sbjct: 1226 FYDNLTNSFIVFDPPKILGDALEAIVGAIFIDCGLHLSVAYRSLDKIFEDVLPRLKQDEP 1285 Query: 155 RDAKTELQE----WAHAKFGVTPEYKVT--FRSG----PDHDPRFT-VVVEISGLAPAQG 203 RD + L + ++ G E+ V SG D F V + G A G Sbjct: 1286 RDPISLLLRTRDTYCCSELGRVTEHVVEKKETSGIRDNEDECESFRLCKVSLHGKVIATG 1345 Query: 204 MDC-SKRAAEQVAAAEVLK 221 S AEQ A+ + Sbjct: 1346 RHRTSNTVAEQRASLNAYE 1364 Score = 58.2 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 2/100 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 A + L K+I + L ALT I Y+ LE +GD L L S ++ Sbjct: 918 DASQVQALLKKIDVPHVSLDLATMALTQPGI--DVPWDYQTLETVGDAFLKLATSVHVYL 975 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101 EG++S + V E + + L S++ S Sbjct: 976 SHTKKGEGDMSALRSKSVDNEYLRSKSLQAGLGSYVLSSR 1015 >gi|241896736|emb|CAZ65730.1| dicer-2 protein [Mucor circinelloides f. lusitanicus] Length = 1608 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 53/253 (20%), Positives = 95/253 (37%), Gaps = 33/253 (13%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + +L + + +G F L+ +ALTH+S+ +S Y+RLEFLGD IL ++ LF Sbjct: 1320 LRSLDLPKVTEIVGREFKTPLLIVEALTHASLPNSTSPCYQRLEFLGDAILDFMVIRYLF 1379 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD------------------ 102 + A G ++ +S V+ V E L I S Sbjct: 1380 ARYPDADPGIITDLKDSCVNNHILGIVCIETGLYRHIIHYSGKLIRAIEFFVSEVEETKA 1439 Query: 103 -----LRKDVCSFMTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQ---RALKSGK 152 V + + +DVVES++ A ++D G E K++ + Sbjct: 1440 RGEAVGEYWVDFNIPKVLSDVVESMLGATFVDAGFRLEAVEELFAKWFLPILNNHVTPEL 1499 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKV--TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + +L + + + +GP+ V+ + A G D + + Sbjct: 1500 IKFHPLRKLITDLQRFGCDSFMLRNHGSGETGPESQK---CVIFLHDKPLATGSDWNIKT 1556 Query: 211 AEQVAAAEVLKRE 223 A + AA + +R Sbjct: 1557 ARRHAATKASQRL 1569 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 24/130 (18%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +A T S + +YERLE LGD +L + + L+ +F + EGEL ++ Sbjct: 1152 EAYTTPSANMEM--NYERLETLGDSLLKFIATIRLYINFPFSNEGELHHLRIRVICNRAL 1209 Query: 85 SQVARELDLASFIRVSSDLRKDVCS---------------------FMTSIQADVVESLI 123 + A+ L ++ S + AD+VE+ + Sbjct: 1210 YRSAKRLKFYRYV-TSQAFNRRYWRPPGFTSPADNQETIDGLKYHKLSDKTLADIVEASL 1268 Query: 124 AALYLDGGIE 133 A YL G+E Sbjct: 1269 GAAYLSNGLE 1278 >gi|156368540|ref|XP_001627751.1| predicted protein [Nematostella vectensis] gi|156214670|gb|EDO35651.1| predicted protein [Nematostella vectensis] Length = 199 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 37/184 (20%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 EKRIGY F+N+ L +ALTH+S S + + Y+RLEFLGD +L L++ L+++ + Sbjct: 4 FEKRIGYEFSNKLYLIQALTHASYSQNRLTDCYQRLEFLGDALLDFLVTELIYSRNTNLD 63 Query: 68 EGELSVRFNSLVSAETCSQVARELDL-------------------------------ASF 96 GEL+ +LV+ +++A + F Sbjct: 64 PGELTDLRQALVNNNIFAEIAVKHGFNKSLFQMSPEWFNKIGVFVDHVKEREARGIQDPF 123 Query: 97 IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKS--GKF 153 + +S+D + + D+ ES+ A++LD G+++ T+ V + + + Sbjct: 124 LTLSNDDEE--GIEAPKVLGDIFESVAGAIFLDSGMDLVLTWRVYYRMLKPYIDAYSADV 181 Query: 154 RRDA 157 ++ Sbjct: 182 PKNP 185 >gi|260945020|ref|XP_002616808.1| hypothetical protein CLUG_04049 [Clavispora lusitaniae ATCC 42720] gi|238850457|gb|EEQ39921.1| hypothetical protein CLUG_04049 [Clavispora lusitaniae ATCC 42720] Length = 406 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 92/226 (40%), Gaps = 21/226 (9%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 N L + H S S + ERLEFLGD +L L++ +L+ F A Sbjct: 58 KIRNAHLRARVFQHKSTSANKTYLAEQEIVSSHNERLEFLGDSVLNTLVTFILYEKFPFA 117 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG LS +SLVS +T ++ + + +R D + + I AD+ E+ + AL Sbjct: 118 NEGLLSQIRSSLVSNKTLAEFSTQYGFDQSLRCKVDE-SALRNGKQKIFADIFEAYVGAL 176 Query: 127 YLDGGIEV--AGTFVDKYWKQRALKSG-------KFRRDAKTELQEWAHAKFGVTPEYKV 177 ++ G ++ ++ + ++ +DAKTEL + P YKV Sbjct: 177 AMERGFDMNEVQQWLKALMASKLSEADLAIKKATPINKDAKTELYSLV-GTASLHPIYKV 235 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++G F V + +G+ R A AA LK + Sbjct: 236 V-QNGNGVQSLFKVQCVMEDNVLGEGVAPGLRDAGLRAAMAALKNK 280 >gi|157167186|ref|XP_001652212.1| dicer-1 [Aedes aegypti] gi|108877338|gb|EAT41563.1| dicer-1 [Aedes aegypti] Length = 1658 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 33/167 (19%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 Y +E +GY F +R+ L +ALTH+S ++ SY++LEFLGD +L LIS +F Sbjct: 1400 NYRRIESILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQN 1459 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS-------------- 109 + G+L+ ++LV+ T + + L +I S D S Sbjct: 1460 PTMSPGQLTDLRSALVNNVTLACILVRHGLHLYILAESASFTDTVSKFVLFQEQNKHEIT 1519 Query: 110 ------------------FMTSIQADVVESLIAALYLDGGIEVAGTF 138 + DV ESL+AA++LD G + A T+ Sbjct: 1520 DQVNLLVEESDRKMAEFVDVPKALGDVFESLVAAVFLDSGNDFAATW 1566 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 2/78 (2%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 KALT S S + ER E LGD L IS L + EG L+ +VS Sbjct: 1176 IKALTTKSSSDVF--DLERYELLGDAFLKFSISLYLVKYHKEWHEGFLTAVKGQIVSNRN 1233 Query: 84 CSQVARELDLASFIRVSS 101 A + L +++ Sbjct: 1234 LVYCAIKYGLPGMLKIHK 1251 >gi|168027292|ref|XP_001766164.1| dsRNA-specific nuclease dicer and related ribonuclease [Physcomitrella patens subsp. patens] gi|162682596|gb|EDQ69013.1| dsRNA-specific nuclease dicer and related ribonuclease [Physcomitrella patens subsp. patens] Length = 1460 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 25/191 (13%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 EKRIGY F N+ L +ALTH S++ Y+RLEFLGD +L L++ LF Sbjct: 1222 EDLKAFEKRIGYTFKNKYLPLEALTHFSNMVGDQIRCYQRLEFLGDAVLDFLLTRHLFTS 1281 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD---------------- 106 ++ G L+ + V+ E ++VA + L ++R S Sbjct: 1282 HPTSTPGLLTSLRTASVNNERFARVAVKHRLHCYLRHGSGRLLHQIEEFVKSFEAADDDQ 1341 Query: 107 -------VCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAK 158 + D+VES+ A+ +D ++ + V + + Sbjct: 1342 KNSSFGLNGLEAPKVLGDLVESIAGAILVDTCFDLDKVWAVMMPLLEPIVTPATLDIHPV 1401 Query: 159 TELQEWAHAKF 169 TEL+E +K Sbjct: 1402 TELEELCMSKG 1412 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 KALT + + ++ + E LE GD L +S LF +A EG LS R + E Sbjct: 1017 KALTTTRCNENF--NMEALELFGDSFLKYAVSRKLFLESSTANEGVLSTRRIRSICNEAL 1074 Query: 85 SQVARELDLASFIR 98 ++A + L+++IR Sbjct: 1075 HKLAVDRGLSAYIR 1088 >gi|159126799|gb|EDP51915.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus A1163] Length = 1546 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 98/237 (41%), Gaps = 25/237 (10%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFD 64 +E+ +GY F LL A+TH S+ ++ Y+RLEFLGD +L ++ LF F Sbjct: 1276 HVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFP 1335 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI--------- 114 LS ++VS + ++ +L I S+ L+ + ++ I Sbjct: 1336 DRDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQG 1395 Query: 115 --QADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFRRDAKTELQEWAH 166 D+VE+ + A+++D +V F + +++ ++ + T L Sbjct: 1396 ACLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSIYDTFANKHPTTFLHNKLT 1455 Query: 167 AKFGVTPEYKVTFRSGP--DHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 ++G T Y + P D P V + G ++ S R A+ A+ + L Sbjct: 1456 NEYGCT-NYCLKAGELPTIDGAPATVLAAVIVHGNVISEARSSSSRYAKIKASEKAL 1511 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 65/206 (31%), Gaps = 50/206 (24%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +A T H ++YERLEFLGD L + S LF+ + Sbjct: 1078 PDFALEAFTKDSDNTEEHRGQQIHFQRGMGKNYERLEFLGDCFLKMATSIALFSQNPNDD 1137 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK-----------DVCSFMTSIQ- 115 E + V L+ + A + + +IR S + T + Sbjct: 1138 EFDYHVNRMCLICNKNLFNTAIKKQIYRYIR-SRGFSRHIWYPDGLTLLHGKDHSTKLLS 1196 Query: 116 -----------ADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 ADV E+LI A L GG ++A V + + K Sbjct: 1197 EGKHALGEKTIADVCEALIGASLLSGGPEHRFDMATKAVSALVDSPSHRVSC----WK-- 1250 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHD 186 E+ P+Y+ G + D Sbjct: 1251 --EYI--TLYTLPKYQTEKHRGSEDD 1272 >gi|156838880|ref|XP_001643138.1| hypothetical protein Kpol_455p11 [Vanderwaltozyma polyspora DSM 70294] gi|156113733|gb|EDO15280.1| hypothetical protein Kpol_455p11 [Vanderwaltozyma polyspora DSM 70294] Length = 558 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 95/224 (42%), Gaps = 25/224 (11%) Query: 19 NRSLLEKALTHSSISH---------SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 + +L A H S + Q S ERLEFLGD LG L+S +++ F SA EG Sbjct: 113 DENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEG 172 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI-QADVVESLIAALYL 128 LS S+V+ + +L+ ++ + V S AD VE+ I AL + Sbjct: 173 MLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPTRVVKDKMSKRYADCVEAYIGALVI 232 Query: 129 DG-GIEV--AGTFVDKYWKQRALKS------GKFRRDAKTELQEWAH-AKFGVTPEYKVT 178 D G E ++++ +++ KS ++AK EL E K G Y+ Sbjct: 233 DRFGTEFLDIKEWLEELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKL 292 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F V V+I + + S R AE AA +VL+ Sbjct: 293 TEMPP-----FRVEVKIGDILLDEAEGNSIREAEHRAAMKVLEN 331 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISG--LAPAQGMDCSKRAAEQVAAAEVLK 221 ++ V P+Y++ S + FT I G + A G SK+ A+Q AA+ L+ Sbjct: 492 SRSQVFPDYEMVQHSMDN----FTANCIIKGSGIFLASGRGRSKKIAQQNAASAALR 544 >gi|268611358|ref|ZP_06145085.1| dsRNA-spesific ribonuclease [Ruminococcus flavefaciens FD-1] Length = 512 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 61/271 (22%), Positives = 103/271 (38%), Gaps = 53/271 (19%) Query: 1 MSALRYS---------TLEKRIGYAFANRSLLEKALTHS--SISHSYQESYERLEFLGDR 49 M+ ++++ + + IGY F N +LL +A T SI + +ES E LEF GD+ Sbjct: 149 MNTMKFAASPDKDPAIKIAQIIGYHFNNDNLLRQAFTRRAFSIEYGLEESNEILEFFGDQ 208 Query: 50 ILGLLISTLLFNHF-------------DSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 +L ++I+ +++ F EGEL+ + ++ E S A EL L + Sbjct: 209 VLSMIITREMYSSFIVYSNHSVEAPFTSKFNEGELTKIRSKFINKEHLSARAAELGLDKY 268 Query: 97 IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKS 150 I + S + D++E+LI A+ D +V V Y+ Sbjct: 269 ILYGTGEEP-----GDSAREDMMEALIGAVAADSNWNWKVIEDVVDKLVALYFGNTERLL 323 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI------SGLAPAQGM 204 + D L +W FG PEY+V + P + + + Sbjct: 324 EESAYD---RLNKWHQKHFGCMPEYEVRRVCTDEDSPSSRYICTLRYSVPSNDKGIRNAQ 380 Query: 205 ------DCSKRAAEQVAAAEVL---KREGIW 226 S+ A A L K+ G+W Sbjct: 381 RIDGRPGFSRSMARAYCANMALIFIKKHGLW 411 >gi|57236096|gb|AAW48725.1| dicer-2 [Aedes aegypti] Length = 1658 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 33/167 (19%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 Y +E +GY F +R+ L +ALTH+S ++ SY++LEFLGD +L LIS +F Sbjct: 1400 NYRRIEGILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQN 1459 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS-------------- 109 + G+L+ ++LV+ T + + L +I S D S Sbjct: 1460 PTMSPGQLTDLRSALVNNVTLACILVRHGLHLYILAESASFTDTVSKFVLFQEQHKHEIT 1519 Query: 110 ------------------FMTSIQADVVESLIAALYLDGGIEVAGTF 138 + DV ESL+AA++LD G + A T+ Sbjct: 1520 DQVNLLVEESDRKMAEFVDVPKALGDVFESLVAAVFLDSGNDFAATW 1566 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 2/78 (2%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 KALT S S + ER E LGD L IS L + EG L+ +VS Sbjct: 1176 IKALTTKSSSDVF--DLERYELLGDAFLKFSISLYLVKYHKEWHEGFLTAVKGQIVSNRN 1233 Query: 84 CSQVARELDLASFIRVSS 101 A + L +++ Sbjct: 1234 LVYCAIKYGLPGMLKIHK 1251 >gi|307169911|gb|EFN62420.1| Endoribonuclease Dcr-1 [Camponotus floridanus] Length = 506 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 92/226 (40%), Gaps = 51/226 (22%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +IGY F NR+ L +A TH S + + E Y+RLEFLGD IL LI+ ++ + Sbjct: 252 NDMETKIGYKFNNRAFLLQAFTHPSYTPNVITECYQRLEFLGDAILDFLITCYIYETCGN 311 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------- 111 G L+ ++LV+ T + +A L + + + L + + F+ Sbjct: 312 LSPGHLTDLRSALVNNITFACLAVRYGLDTALLSYAPKLHEAIDRFVKFQQERNYVVNDE 371 Query: 112 -------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 + D+ ESLI A+YLD G + + + + + K Sbjct: 372 LLWVLLEEEECNLAEYVDVPKVLGDLFESLIGAIYLDSGKNLTKVW-EIVYSFTHKEIDK 430 Query: 153 FRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 F ++ K V Y+ T D P+F V I G Sbjct: 431 FSKNTPK----------HPVRLIYENT-----DSRPKFLDAVLIEG 461 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ERLE LGD L + S L++ F + EG+L+ ++ + ++ I+ Sbjct: 44 DLERLETLGDSYLKFITSLFLYHKFPAFNEGQLTALKGKIIGNRNLYYCGNKKNIPGRIK 103 >gi|255589974|ref|XP_002535144.1| dicer-1, putative [Ricinus communis] gi|223523936|gb|EEF27239.1| dicer-1, putative [Ricinus communis] Length = 259 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 89/234 (38%), Gaps = 53/234 (22%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ + Y F NRSLLE+A T SS SYERLE +GD +L LL + + + + Sbjct: 35 VEEILKYKFKNRSLLEEAFTDSSFP-GKCFSYERLEHVGDSVLNLLFTKEHYFKYPNLPP 93 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS-----------------FM 111 G L+ + V E ++VA + F+R L ++ + Sbjct: 94 GALTRLRAANVDTEKLARVAVKHGFHRFLRHKKPLLEEQIREFSQAILEYPLHSNGLVDV 153 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 + AD+VES I A+++D + VD WK+R LK W + Sbjct: 154 PKVLADIVESAIGAVFIDSN-----SSVDTVWKKRNLKVKFVDL--------WRESMA-- 198 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEVLKREG 224 V V I +G K+ A AA + L G Sbjct: 199 -------------------VDVFIDDQLVGRGTYGLKKEIAHNRAAKDALDNIG 233 >gi|302318908|ref|NP_001180543.1| dicer-2 [Bombyx mori] gi|300669733|dbj|BAJ11655.1| DICER-2 [Bombyx mori] Length = 1677 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 37/198 (18%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +EK + Y F + + L AL+HSS + SYERLEFLGD I+ L+++ +F + Sbjct: 1424 TDVEKILNYTFKDSTFLLNALSHSSYIRNRLTSSYERLEFLGDAIIDFLVTSHIFENCRE 1483 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSF------------- 110 K GE++ ++LV+ T + +L L ++ ++ L K + F Sbjct: 1484 LKPGEMTDLRSALVNNVTFAAYTVKLGLHKYLCSELNPSLEKAIMKFVEHQIERNHEIEF 1543 Query: 111 ------------------MTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALK- 149 + + +D+ E+L+ A+YLD G +E + + K Sbjct: 1544 DVLLLISEVDCQVAEYVDVPKVLSDIFEALVGAVYLDSGGNLETVWSVLYKIMHVEIDSF 1603 Query: 150 SGKFRRDAKTELQEWAHA 167 S + + L E HA Sbjct: 1604 SKRIPKQPVKILYEMIHA 1621 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 ALT +I+ + ER E LGD L S L + F + EG+L+ L+S Sbjct: 1194 ALT--TINSNDTFDLERPETLGDSFLKFAASLYLHHKFPNMNEGQLTNIKGKLISNRNLY 1251 Query: 86 QVARELDLASFIRV 99 + +L ++V Sbjct: 1252 YAGAKFNLGGRMKV 1265 >gi|146324173|ref|XP_753471.2| RNA helicase/RNAse III [Aspergillus fumigatus Af293] gi|129558032|gb|EAL91433.2| RNA helicase/RNAse III, putative [Aspergillus fumigatus Af293] Length = 1546 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 98/237 (41%), Gaps = 25/237 (10%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFD 64 +E+ +GY F LL A+TH S+ ++ Y+RLEFLGD +L ++ LF F Sbjct: 1276 HVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFP 1335 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI--------- 114 LS ++VS + ++ +L I S+ L+ + ++ I Sbjct: 1336 DRDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQG 1395 Query: 115 --QADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFRRDAKTELQEWAH 166 D+VE+ + A+++D +V F + +++ ++ + T L Sbjct: 1396 ACLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSIYDTFANKHPTTFLHNKLT 1455 Query: 167 AKFGVTPEYKVTFRSGP--DHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 ++G T Y + P D P V + G ++ S R A+ A+ + L Sbjct: 1456 NEYGCT-NYCLKAGELPTIDGAPATVLAAVIVHGNVISEARSSSSRYAKITASEKAL 1511 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 65/206 (31%), Gaps = 50/206 (24%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +A T H ++YERLEFLGD L + S LF+ + Sbjct: 1078 PDFALEAFTKDSDNTEEHRGQQIHFQRGMGKNYERLEFLGDCFLKMATSIALFSQNPNDD 1137 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK-----------DVCSFMTSIQ- 115 E + V L+ + A + + +IR S + T + Sbjct: 1138 EFDYHVNRMCLICNKNLFNTAIKKQIYRYIR-SRGFSRHIWYPDGLTLLHGKDHSTKLLS 1196 Query: 116 -----------ADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 ADV E+LI A L GG ++A V + + K Sbjct: 1197 EGKHALGEKTIADVCEALIGASLLSGGPEHRFDMATKAVSALVDSPSHRVSC----WK-- 1250 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHD 186 E+ P+Y+ G + D Sbjct: 1251 --EYI--TLYTLPKYQTEKHRGSEDD 1272 >gi|302794558|ref|XP_002979043.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii] gi|300153361|gb|EFJ20000.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii] Length = 1686 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 21/165 (12%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +LE ++ Y F NRSLL +A+TH+S + Y+RLEFLGD +L L+S LF Sbjct: 1491 SLESLEHKLQYKFQNRSLLVEAITHASQPNCLL-CYQRLEFLGDGVLDFLVSRHLFETHP 1549 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111 G L+ ++ V+ + +++ L ++ S Sbjct: 1550 GLPPGTLTDLRSAAVNNKWFARLVVRHGLHQHLQHGSVELDCEIRKFVQNVKEKPDASCF 1609 Query: 112 -----TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 + D++ES+ A+++D ++ + + + SG Sbjct: 1610 EDLSAPKVLGDLLESITGAIFVDTNFDLERLW--RVVLPFVIASG 1652 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 55/152 (36%), Gaps = 36/152 (23%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +A+T S + SYE LE LGD L +++ LF +D EG+LS R + Sbjct: 1312 EAIT--SKKCHEEFSYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRSRATCNAAL 1369 Query: 85 SQVARELDLASFIR---------VSSDL--------RKDVCSF----------------- 110 Q+A+ +A +IR + R SF Sbjct: 1370 YQLAKSSGIAEYIRDEEFNPSNWTGPGMLTSDSSKCRHQQGSFENEENYFSSCASGHRGI 1429 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 ADVVE+LI A G A + + Sbjct: 1430 RRKALADVVEALIGAYLATSGPPSAMELMKQL 1461 >gi|331236934|ref|XP_003331125.1| hypothetical protein PGTG_13088 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309310115|gb|EFP86706.1| hypothetical protein PGTG_13088 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1465 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 48/261 (18%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 L+ LEK+IGY F + LL +ALTH S + YER E+LGD ++ + I + F Sbjct: 1099 LKCQALEKKIGYVFKEKLLLVQALTHRSANSFMTNCYEREEWLGDAVIDMWIVEHAYKRF 1158 Query: 64 DSAKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSSDLRKDVCSFM----------- 111 D A EL++ +VS + +A ++L L I +S+ + C+ Sbjct: 1159 DHATAEELTLARAKVVSNGSLGFLALKKLGLQEIIMHASENFEQACTEAIEAIKPFAKIE 1218 Query: 112 ---------------TSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQRALKSGKF- 153 I DV+E+++ A+++D G A +D ++ + Sbjct: 1219 EYFSTIDNLFVVFDPPKILNDVLEAIVGAVFIDSGFNLHTAYRTLDIIFEDVIPGLSRLV 1278 Query: 154 RRDAKT---EL--QEWAHAKFG-------VTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 RD + L Q P G D +E+ G A Sbjct: 1279 ARDPLSTMLRLRDQYQCAELRRISTTIREPNP-----NEEGKDPISVKVCRIELHGQEIA 1333 Query: 202 QGMDCSK-RAAEQVAAAEVLK 221 G S AEQ A+ E LK Sbjct: 1334 SGRHKSSASVAEQRASLEALK 1354 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 15/143 (10%) Query: 2 SALRYSTLEKRIGYAFANRSLL--EKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 L+ + L KR+ F SLL +ALT Y+ LE LGD L L S + Sbjct: 919 DTLQATALFKRLD--FPTISLLHGIQALTPP--GGGVPWDYQTLETLGDAFLKLATSVHV 974 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR--VSSDLRKDVCSFMT----- 112 + EG++S + V + A + +L + I S R+ Sbjct: 975 YLSHLKKGEGDMSHVRSRSVDNAYLRRKAIQANLPASILSQHPSTRRRQGAPQREFSRKI 1034 Query: 113 --SIQADVVESLIAALYLDGGIE 133 + +DVVE+L+ A +L GGIE Sbjct: 1035 PKRVLSDVVEALLGAGFLTGGIE 1057 >gi|296424770|ref|XP_002841919.1| hypothetical protein [Tuber melanosporum Mel28] gi|295638171|emb|CAZ86110.1| unnamed protein product [Tuber melanosporum] Length = 1402 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 95/261 (36%), Gaps = 57/261 (21%) Query: 7 STLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E+ +GY F + LL ALTH S + SY+RLEFLGD +L L+ +F + Sbjct: 1122 EDIEELVGYKFKHPRLLISALTHPSLPFTWDRVPSYQRLEFLGDAVLDLVCVRYMFQKYP 1181 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF------------- 110 A L+ ++VS + VA E+ + R+ S L + + Sbjct: 1182 HADPQWLTEHKMAMVSNKFLGMVAVEMGFHRKLRRMGSVLDHAIREYEVDIQDAKANSNG 1241 Query: 111 ----------MTSIQADVVESLIAALYLDGGIEV------AGTFVDKYWKQRAL---KSG 151 DV+E+ I A+++D G + TF+ Y+ + +G Sbjct: 1242 AVDFWTSLKAPPKALPDVLEAFIGAVFVDSGFQYNIVERLVNTFILPYFVDMTVFDNFAG 1301 Query: 152 KFRRDAKTELQ-----EW----AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 + T+ E+ + Y +T + + + Sbjct: 1302 QHPTTYITKFMDDLNCEFWGFESQQCMTGNMTYILT-------------AIVVHREIFSY 1348 Query: 203 GMDCSKRAAEQVAAAEVLKRE 223 G S +AA A+ +++ Sbjct: 1349 GSGVSVKAARVEASLAAIQKL 1369 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 58/163 (35%), Gaps = 31/163 (19%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S+ +YERLEFLGD L L S L+ + + E EL V+ L+ A+E Sbjct: 951 SLQRGMGSNYERLEFLGDCFLKLATSLSLYTAYHADDECELHVKRMVLICNRYLFTKAKE 1010 Query: 91 LDLASFI----------------RVSSDLRKDVC-------SFMTSIQADVVESLIAALY 127 + + +I + + +DV E+LI A Sbjct: 1011 MKIPEYIQTAGFSRRTWYPKMKLLMGKGTTQHNSSKEEISHRLADKSISDVCEALIGAAL 1070 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT-------ELQE 163 +D G++ A V + S K D +LQE Sbjct: 1071 IDKGLDGATQIVTAILRTPE-HSQKVWADYYNCYTKPAYQLQE 1112 >gi|224116530|ref|XP_002317324.1| predicted protein [Populus trichocarpa] gi|222860389|gb|EEE97936.1| predicted protein [Populus trichocarpa] Length = 217 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 27/194 (13%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M A ++ +EK + Y F N+ LE+ALTHSS + S SY+R+EFLGD LGL +S ++ Sbjct: 1 MEASVFA-VEKILNYKFKNKRHLEEALTHSSYTDSA--SYQRMEFLGDAALGLALSNYVY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS---------------SDLRK 105 + G LS+ + +S E ++VA + L F+R + S Sbjct: 58 LAYPQLDPGHLSLLRAANISTEKLARVAIKHGLYRFVRHNATALDDKVKEFSDAVSGEDD 117 Query: 106 D-----VCSFM-TSIQADVVESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRR--D 156 D S I AD+VES+ AA+Y+D ++ +V + + + ++ Sbjct: 118 DDALVYGGSIKAPKILADIVESVAAAVYVDVDFDLQTFWVIFRGILEPIVTLEDLQQQPQ 177 Query: 157 AKTELQEWAHAKFG 170 T L E + Sbjct: 178 PVTMLFERCQKQGK 191 >gi|167046036|gb|ABZ10549.1| dicer 1 [Nematostella vectensis] Length = 412 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 37/171 (21%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFN 61 A++ E RIGY F+N+ L +ALTH+S S + + Y+RLEFLGD +L L++ L+++ Sbjct: 236 AVQLQGFENRIGYEFSNKLYLIQALTHASYSQNRLTDCYQRLEFLGDALLDFLVTELIYS 295 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDL---------------------------- 93 + GEL+ +LV+ +++A + Sbjct: 296 RNTNLDPGELTDLRQALVNNNIFAEIAVKHGFNKSLFQMSPEWFNKIGVFVDHVKEREAR 355 Query: 94 ------ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 F+ +S+D + + D+ ES+ A++LD G+++ T+ Sbjct: 356 GIQISKDPFLTLSNDDEE--GIEAPKVLGDIFESVAGAIFLDSGMDLVLTW 404 Score = 71.6 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 4/102 (3%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + LL +ALT S ++ ERLE LGD L +S L+ + EG+L+ R S Sbjct: 16 DSELLLQALTTKSAGDAF--DLERLEMLGDAFLKQAVSIFLYCCYKDGDEGKLTKRKTSQ 73 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +S +VA L L +++ + R S+QA VE Sbjct: 74 LSNRALYRVACRLGLPEYLQNTQLDRVS--WTTPSLQAAEVE 113 >gi|114654621|ref|XP_001154071.1| PREDICTED: dicer1 isoform 2 [Pan troglodytes] Length = 1868 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 36/195 (18%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149 S + D+ ESL A+Y+D G+ E + K Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845 Query: 150 SGKFRRDAKTELQEW 164 S R EL E Sbjct: 1846 SANVPRSPVRELLEM 1860 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372 >gi|224613135|dbj|BAH24240.1| dsRNA-specific ribonuclease RNaseIII [Candidatus Phytoplasma oryzae] Length = 161 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 3/136 (2%) Query: 87 VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146 ARE+ L +I + +K + SI AD E+L A+YLD G Sbjct: 3 YAREIKLKDYILLGKGEKKRYI-YNYSIIADAFEALFGAIYLDLGYSEVERVFYHIILP- 60 Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 LK D KT+LQE + YK+ G H+ +F + +G+ Sbjct: 61 CLKKTINIIDFKTKLQELVQTEKK-NICYKIISEKGLAHEKKFLAEAYLENKCLGRGLGK 119 Query: 207 SKRAAEQVAAAEVLKR 222 +K+AAEQ AA + LK Sbjct: 120 TKKAAEQRAAEKALKN 135 >gi|156554976|ref|XP_001602524.1| PREDICTED: similar to dicer-1 [Nasonia vitripennis] Length = 1563 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 36/176 (20%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 T+E+R+GY F NR+ L +A TH S + SY+RLEFLGD +L L++ ++ + Sbjct: 1362 TMEERLGYKFRNRAFLLQAFTHPSYMPNRQTASYQRLEFLGDAVLDFLLTIHIYETCGNL 1421 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF--------------- 110 GEL+ ++LV+ T + +A L + + ++ L + F Sbjct: 1422 SPGELTDLRSALVNNITFACLAVRYGLHTALLALAPKLFDLIDKFVKFQENRNYKIDDEL 1481 Query: 111 -----------------MTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRA 147 + + D+ ES+I A++LD G +EV + K Sbjct: 1482 LWVLLEEEECNMAEHVDVPKVLGDIYESVIGAIFLDSGKNLEVVWQVIYNLMKNEI 1537 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + ER+E LGD L IS L+ + + EG L+ LV +++ ++A + Sbjct: 1150 NLERVETLGDSFLKFAISLFLYQAYPTCGEGPLTHLKGKLVGNLNLFYCSKQKNIAGRMH 1209 Query: 99 V 99 V Sbjct: 1210 V 1210 >gi|18158946|pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution gi|18158947|pdb|1JFZ|B Chain B, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution gi|18158948|pdb|1JFZ|C Chain C, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution gi|18158949|pdb|1JFZ|D Chain D, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution gi|47168733|pdb|1RC5|A Chain A, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.30 Angstrom Resolution gi|47168734|pdb|1RC5|B Chain B, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.30 Angstrom Resolution gi|47168735|pdb|1RC5|C Chain C, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.30 Angstrom Resolution gi|47168736|pdb|1RC5|D Chain D, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.30 Angstrom Resolution Length = 154 Score = 127 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 10/152 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LEK++GY F ++SLLEKALTH S S +E YE LEFLGD ++ I LL + + Sbjct: 5 LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 62 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG LS L+S E + +A++L+L FIR+ +I DV E+L AA Sbjct: 63 KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRG------KINETIIGDVFEALWAA 116 Query: 126 LYLDGGIEV--AGTFVDKYWKQRALKSGKFRR 155 +Y+D G + K +K+ L + K R Sbjct: 117 VYIDSGRDANFTRELFYKLFKEDILSAIKEGR 148 >gi|18158935|pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.15 Angstrom Resolution gi|18158936|pdb|1I4S|B Chain B, Crystal Structure Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.15 Angstrom Resolution Length = 147 Score = 127 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 10/152 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LEK++GY F ++SLLEKALTH S S +E YE LEFLGD ++ I LL + + Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG LS L+S E + +A++L+L FIR+ +I DV E+L AA Sbjct: 62 KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRG------KINETIIGDVFEALWAA 115 Query: 126 LYLDGGIEV--AGTFVDKYWKQRALKSGKFRR 155 +Y+D G + K +K+ L + K R Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGR 147 >gi|258567596|ref|XP_002584542.1| predicted protein [Uncinocarpus reesii 1704] gi|237905988|gb|EEP80389.1| predicted protein [Uncinocarpus reesii 1704] Length = 1055 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 77/184 (41%), Gaps = 32/184 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + +++++GY F LL A THSS ++ Y+RLEFLGD +L + L++ + Sbjct: 863 VAQIKEKLGYQFKYPKLLRSAFTHSSYPSAWAAVPCYQRLEFLGDSLLDMACVEHLYHRY 922 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSI-------- 114 L+ ++VS + VA +L L +R S+ ++ + +++ I Sbjct: 923 PDKDPQWLTEHKMAMVSNKFLGCVAVKLGLHPHLRHFSAPIQSQIATYVEEIEAAELESG 982 Query: 115 ---------------QADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKF 153 D+VE+ I A+++D + F+ +Y++ + Sbjct: 983 DSPDAWTSTSDPPKCLPDMVEAYIGAIFIDSDFRYEVVEDFFERFLKRYFEDMTIYDTYA 1042 Query: 154 RRDA 157 + Sbjct: 1043 NKHP 1046 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 67/201 (33%), Gaps = 48/201 (23%) Query: 21 SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +ALT H + ++YERLEFLGD L + S LF E Sbjct: 669 ELALEALTKDSDNTEEHRAMQVHFQRGMGKNYERLEFLGDCFLKMATSISLFTMNPDNDE 728 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRV-----------------SSDLRKDVCSFM 111 + V+ LV + + A L L FIR K Sbjct: 729 YDFHVKRMCLVCNQNLFKAALNLKLYEFIRSQSFSRRGWYPEGLTLLQGKGQSKTAPENK 788 Query: 112 ----TSIQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 ADV E+LI A YL GG ++A V + + + +D Sbjct: 789 HALADKTIADVCEALIGASYLSGGKSHRFDMAVRAVT-VFVNSSDHNVSDWQDY------ 841 Query: 164 WAHAKFGVTPEYKVTFRSGPD 184 +K P Y+ T S P Sbjct: 842 ---SKLYALPRYQ-TAVSDPA 858 >gi|255550219|ref|XP_002516160.1| Ribonuclease III, putative [Ricinus communis] gi|223544646|gb|EEF46162.1| Ribonuclease III, putative [Ricinus communis] Length = 1660 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 102/243 (41%), Gaps = 39/243 (16%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E ++GY F+ + LL++A+TH+S+ Y+RLEFLGD +L LLI+ L+ + S Sbjct: 1265 IESKLGYTFSVKFLLQEAMTHASMQEQGIGYCYQRLEFLGDSVLDLLITWHLYQNHTSMD 1324 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRV------------------SSDLRKDVCS 109 GEL+ ++ VS E +QV DL ++ S ++ K Sbjct: 1325 PGELTDLRSACVSNENFAQVVVRRDLYKHLQHCSTLLLSQIKEYLESFHESDEVAKATGP 1384 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTF------VDKYWKQRALKSGKFRRDAKTELQE 163 D++ES+ A+ +D + + + + + L+ R EL + Sbjct: 1385 KGPKALGDLLESIAGAMLIDAKLNLDEVWRIFMPLLSPLATPQNLELPPLR-----ELMQ 1439 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVL 220 ++ +++ + + L G D S++AA+ AA +L Sbjct: 1440 LCNSLGYF------IKEKCINNNDIVHAELRLQLNDVLLVGNGCDRSRKAAKGKAATHLL 1493 Query: 221 KRE 223 K+ Sbjct: 1494 KKL 1496 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 65/192 (33%), Gaps = 52/192 (27%) Query: 17 FANRSLLE-KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F SLL +A+T + + S ERLE LGD +L +S LF + + EG+LS + Sbjct: 1063 FHIPSLLILEAIT--TPRSCEKVSMERLELLGDSVLKYSVSCDLFLRYPTKHEGQLSAQR 1120 Query: 76 NSLVSAETCSQVARELDLASFIRVSS---------------------------------- 101 V T Q+ L +IR S+ Sbjct: 1121 TRAVCNSTLHQLGIGCKLQGYIRDSAFIPRYWVAPGQQPAFYVSCTCGVDTLEVPLDAKF 1180 Query: 102 ---------DLRKDVCSFM--TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 + + +D VE++I A Y+ GG+ A + W ++ Sbjct: 1181 QTEDPKVQIAICCSKGHRWMCSKTISDCVEAVIGAYYVSGGLMAALHVMQ--WLGMDVEF 1238 Query: 151 GKFRRD--AKTE 160 D KT Sbjct: 1239 DPSLVDKIIKTA 1250 >gi|255660287|ref|ZP_05405696.1| ribonuclease III [Mycoplasma genitalium G37] Length = 271 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 13/180 (7%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61 + +T K + N EKA H+S + ++ ESY+RLEFLGD ++ +++ LF Sbjct: 26 KLATFLKNLDIFPNNWEFFEKAFIHASYINEHEDVSESYDRLEFLGDALIDFVVAKKLFE 85 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ +V E +++ EL L F+++S+ + DV+E+ Sbjct: 86 LYPKYNEGLLTRTKIEIVKGENLNRIGMELKLGDFVKLSNGAELT-----ENTVGDVLEA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 L+ A+Y D G++ A FV+KY +R S + D + QE + P +V+ S Sbjct: 141 LVGAIYEDMGMKKATEFVEKYIFERTF-SEILKYDFFSLFQE----QKLPEPRVRVSLTS 195 >gi|316974223|gb|EFV57735.1| putative ribosomal protein S7e [Trichinella spiralis] Length = 2029 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 92/251 (36%), Gaps = 50/251 (19%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTL 58 +A ++ E +IGY F N++ L +ALTHSS + +SYERLEFLGD IL LIS Sbjct: 1763 TAYDLNSFEAKIGYRFTNKAYLIQALTHSSYNEVETPVTDSYERLEFLGDAILDYLISRH 1822 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSFM------ 111 L++ G LS +LV+ A L + F+ L++ V Sbjct: 1823 LYSSKRIRSPGLLSDLRAALVNNYFLYFNAELLSVNERFVLAMRGLKESVNFHNELYMME 1882 Query: 112 -------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 D+ ES+ A++LD +A + Y+ A + GK Sbjct: 1883 EEQDDDEKETSEFAEHVEVPKPLGDIFESVAGAIFLDSHCSLATVW-QVYYNMIAEEIGK 1941 Query: 153 FRRDAKT--------------ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 R D + L E + + G V V ++G Sbjct: 1942 QRSDFTSFNKCLCHPPISPVRHLLELEPERVQFNI---LDREEGNSG---VHVQVVVTGK 1995 Query: 199 APAQGMDCSKR 209 G S R Sbjct: 1996 GSFIGSGKSYR 2006 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALT + E +E LGD L ++S +F + EG L+ + +VS Sbjct: 1545 RALTLRKAQDMF--DLESMEALGDSFLKFIVSLHVFIKETNWNEGRLTSLRSEIVSNTNL 1602 Query: 85 SQVARE 90 + ++ Sbjct: 1603 FNLGKQ 1608 >gi|12045228|ref|NP_073039.1| ribonuclease III [Mycoplasma genitalium G37] gi|1350804|sp|P47607|RNC_MYCGE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|3844954|gb|AAC71594.1| ribonuclease III [Mycoplasma genitalium G37] gi|166078923|gb|ABY79541.1| ribonuclease III [synthetic Mycoplasma genitalium JCVI-1.0] Length = 262 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 13/180 (7%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61 + +T K + N EKA H+S + ++ ESY+RLEFLGD ++ +++ LF Sbjct: 17 KLATFLKNLDIFPNNWEFFEKAFIHASYINEHEDVSESYDRLEFLGDALIDFVVAKKLFE 76 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ +V E +++ EL L F+++S+ + DV+E+ Sbjct: 77 LYPKYNEGLLTRTKIEIVKGENLNRIGMELKLGDFVKLSNGAELT-----ENTVGDVLEA 131 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 L+ A+Y D G++ A FV+KY +R S + D + QE + P +V+ S Sbjct: 132 LVGAIYEDMGMKKATEFVEKYIFERTF-SEILKYDFFSLFQE----QKLPEPRVRVSLTS 186 >gi|171690380|ref|XP_001910115.1| hypothetical protein [Podospora anserina S mat+] gi|170945138|emb|CAP71249.1| unnamed protein product [Podospora anserina S mat+] Length = 1568 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 54/271 (19%), Positives = 90/271 (33%), Gaps = 56/271 (20%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 KR+GY F LL A H + S SY+RLEFLGD +L + LF+ F Sbjct: 1258 EKFHKRMGYRFQYPRLLRSAFQHPTYPTSWEKLPSYQRLEFLGDALLDMACIDHLFHRFP 1317 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----------------- 107 A L+ ++VS + +A + ++ SS + Sbjct: 1318 GADPQWLTEHKMAMVSNQFLGCLAVYIGFHRSLQHSSPAVQSEIASYVTEIEEALAAAKA 1377 Query: 108 -------------------CSFMTSIQADVVESLIAALYLDGGIE--VAGTFVDK----Y 142 CS D +E+ + A+++D + F DK + Sbjct: 1378 AAVQEGKSESNFARDFWVDCSRPPKCLPDTIEAYVGAIFVDSSYDYQTVQDFFDKHIQFW 1437 Query: 143 WKQRALKSGKFRRDAKTEL----------QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 ++ L + T L QEW + + G + + Sbjct: 1438 FEDMRLYDTFANKHPVTFLGHEMQHRFRCQEWRLLTREIMVDKD--EEGGMMGEKQVVCA 1495 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + G A + S R ++ AA + L+ Sbjct: 1496 VMVHGQKLAHAVAQSARYSKIGAAKKALREL 1526 Score = 74.7 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 55/163 (33%), Gaps = 38/163 (23%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +A T S +YERLEFLGD L + + ++ Sbjct: 1065 PDLALEAFTKDSDNTDEQDVEQVNFQRGMGNNYERLEFLGDAFLKMATTIAIYTLIPDKD 1124 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDLRKDVCSFMT 112 E E V L+ A E+ L +IR + RKD+ Sbjct: 1125 EFEYHVERMVLICNRNLFNNALEVKLEEYIRSMAFNRRTWYPEGLTLKRGKRKDI--RKK 1182 Query: 113 SIQ-----ADVVESLIAALYL----DGGIEVAGTFVDKYWKQR 146 + ADV E++I A YL G ++A V + + Sbjct: 1183 HVLADKSIADVCEAIIGAAYLTAQEAGNFDMAIQAVTRMVNDK 1225 >gi|218196456|gb|EEC78883.1| hypothetical protein OsI_19246 [Oryza sativa Indica Group] gi|222630918|gb|EEE63050.1| hypothetical protein OsJ_17858 [Oryza sativa Japonica Group] Length = 350 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 59/275 (21%), Positives = 100/275 (36%), Gaps = 65/275 (23%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +E+ + Y F + LLE+ALTH S + SY+RLEF+GD LGL S L+ + Sbjct: 38 ARVERLLRYQFRDGRLLEEALTHQSFADDAV-SYQRLEFVGDSALGLAFSNFLYLTNPTL 96 Query: 67 KEGELSVRFNSLVSAETCSQVARELDL---------------ASFIRVSSDLRKD----- 106 G LS + +S E ++VA DL FI +D Sbjct: 97 GPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTV 156 Query: 107 --VCSFM--TSIQADVVESLIAALYLDGGIEVAGTF------------------------ 138 S + + AD+VE++ AA+Y+D ++ + Sbjct: 157 PYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKRLTWLHGLQEIRWTVNTNNIKDW 216 Query: 139 ----------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 V ++ + + + T L E + ++K + G Sbjct: 217 INNFIYGKRLVTRWLFEPIITAETIDEQPVTMLHELCQKHGKMA-QFKTWQKGGMT---- 271 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V V ++G G K A+ AA + ++ Sbjct: 272 -VVNVFVAGELVGIGSSEQKVIAKLNAARDATRKL 305 >gi|13508284|ref|NP_110234.1| ribonuclease III [Mycoplasma pneumoniae M129] gi|2500551|sp|P75233|RNC_MYCPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|1673968|gb|AAB95945.1| ribonuclease III [Mycoplasma pneumoniae M129] gi|301633525|gb|ADK87079.1| ribonuclease III [Mycoplasma pneumoniae FH] Length = 282 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 89/181 (49%), Gaps = 13/181 (7%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLF 60 ++ K + N E A HSS + ++ SY+RLEFLGD ++ +++ LF Sbjct: 16 EKFVAFFKSLNIEPQNWQFYEDAFVHSSYVNENEDARASYDRLEFLGDALIDFIVAKKLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG L+ +V E +++ +EL+ +FI++ + ++ DV+E Sbjct: 76 ELYPNYNEGMLTRTKIEIVKGENLNRIGKELNFGNFIKLGKGMPYT-----ETLFGDVLE 130 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +L+AA+Y D GIE A FV+++ ++ S + + + QE + P +V+ Sbjct: 131 ALVAAIYEDLGIEKANQFVEEHIFKKTY-SEILKYNFFSLFQE----QKLPEPRVRVSLT 185 Query: 181 S 181 S Sbjct: 186 S 186 >gi|19112084|ref|NP_595292.1| double-strand-specific ribonuclease Pac1 [Schizosaccharomyces pombe 972h-] gi|129540|sp|P22192|PAC1_SCHPO RecName: Full=Double-strand-specific pac1 ribonuclease; AltName: Full=Protein hcs gi|4999|emb|CAA38745.1| Pac1 ribonuclease [Schizosaccharomyces pombe] gi|1042212|gb|AAB34897.1| double-strand-specific Pac1 ribonuclease [Schizosaccharomyces pombe] gi|2959372|emb|CAA17926.1| double-strand-specific ribonuclease Pac1 [Schizosaccharomyces pombe] gi|68697667|emb|CAJ14141.1| unnamed protein product [Schizosaccharomyces pombe] Length = 363 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 85/218 (38%), Gaps = 17/218 (7%) Query: 18 ANRSLLEKALTHSSISHSYQES-----------YERLEFLGDRILGLLISTLLFNHFDSA 66 + L E+ H S ++ + ERLEFLGD L + ++F+ F Sbjct: 138 RSEKLKEQVFMHISRAYEIYPNQSNPNELLDIHNERLEFLGDSFFNLFTTRIIFSKFPQM 197 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG LS V E+ + AR + +S KD + AD E+ + AL Sbjct: 198 DEGSLSKLRAKFVGNESADKFARLYGFDKTLVLSYSAEKDQLRKSQKVIADTFEAYLGAL 257 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 LDG E A +V + + + + AK++L + EY+ +G Sbjct: 258 ILDGQEETAFQWVSRLLQPKIANITVQRPIDKLAKSKL--FHKYSTLGHIEYRWVDGAGG 315 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + + + +G A+ +++ A AA + L+ Sbjct: 316 SAEG-YVIACIFNGKEVARAWGANQKDAGSRAAMQALE 352 >gi|51512119|gb|AAU05314.1| pac1 ribonuclease [Schizosaccharomyces pombe] gi|51512121|gb|AAU05315.1| pac1 ribonuclease [Schizosaccharomyces pombe] Length = 363 Score = 125 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 17/218 (7%) Query: 18 ANRSLLEKALTHSSISHSYQES-----------YERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++ H S ++ + ERLEFLGD L + ++F+ F Sbjct: 138 RSEKLKKQVFMHISRAYEIYPNQSNPNELLDIHNERLEFLGDSFFNLFTTRIIFSKFPQM 197 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG LS V E+ + AR + +S KD + AD E+ + AL Sbjct: 198 DEGSLSKLRAKFVGNESADKFARLYGFDKTLVLSYSAEKDQLRKSQKVIADTFEAYLGAL 257 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 LDG E A +V + + + + AK++L + EY+ +G Sbjct: 258 ILDGQEETAFQWVSRLLQPKIANITVQRPIDKLAKSKL--FHKYSTLGHIEYRWVDGAGG 315 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + + + +G A+ +++ A AA + L+ Sbjct: 316 SAEG-YVIACIFNGKEVARAWGANQKDAGSRAAMQALE 352 >gi|134084339|emb|CAK48679.1| unnamed protein product [Aspergillus niger] Length = 1531 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 100/264 (37%), Gaps = 52/264 (19%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65 +E+++ Y F +LL A TH S ++ + Y+RLEFLGD ++ ++ LF F Sbjct: 1235 KIEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPD 1294 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSI---------- 114 L+ ++VS + +A +L L + ++ S+ L+ + + I Sbjct: 1295 RDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGA 1354 Query: 115 -----------------------------QADVVESLIAALYLDG--GIEVAGTF----V 139 D+VE+ + A+++D EV F + Sbjct: 1355 VDYWTVTKDPPKVMTPSALRNTANVDGQCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYI 1414 Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP--DHDPR-FTVVVEIS 196 +++ A+ + T L +FG Y + P D P V + Sbjct: 1415 KPFFEDMAIYDTFANKHPTTFLHNRLTNEFGC-VNYCLKAGEMPSIDGAPAGVLAAVIVH 1473 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVL 220 + A+G S R A+ A+ + L Sbjct: 1474 DVVIAEGTATSGRYAKVKASEKAL 1497 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 46/193 (23%) Query: 11 KRIGYAFANRSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTL 58 + + + L +A T H + + +YERLEFLGD L + S Sbjct: 1023 ESLNFTVK-LDLALEAFTKDSDNTDEHRAQQIHVQRGMGRNYERLEFLGDCFLKMATSIA 1081 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------------- 98 LF E + V L+ + A + ++ +IR Sbjct: 1082 LFTQNPDDDEFDYHVNRMCLICNKNLFNAAVDKEIYKYIRSRGFSRLTDAARHTWYPEGL 1141 Query: 99 -VSSDLRKDVCSFMTS-------IQADVVESLIAALYLDGG----IEVAGTFVDKYWKQR 146 + + S ADV E+LI A L GG ++A V Sbjct: 1142 KLLQGKDHSRKATTESKHALAEKTIADVCEALIGAALLSGGPDHRFDMAVKAVTTLVNSP 1201 Query: 147 ALKSGKFRRDAKT 159 + K+ + +D + Sbjct: 1202 SHKAER-WKDYIS 1213 >gi|310798327|gb|EFQ33220.1| RNase3 domain-containing protein [Glomerella graminicola M1.001] Length = 1532 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 72/207 (34%), Gaps = 36/207 (17%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58 M +++ +GY F +LL A H S ++ +Y+RLEFLGD +L ++ Sbjct: 1233 MQKELARQIKENLGYEFKYPALLRSAFKHPSYPRAYEDLPNYQRLEFLGDALLDMVCVDF 1292 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD------------ 106 LF F A L+ ++VS + + + +L L + + Sbjct: 1293 LFKKFPDADPQWLTEHKTAMVSNQFLACLCVQLGLHKHVLSGHASLLNQTQDFVGVLECA 1352 Query: 107 ----------------VCSFMTSIQADVVESLIAALYLDGGIEV--AGTF----VDKYWK 144 +DVVE+ I AL++D G + F + ++ Sbjct: 1353 KQDAAADGTFSQCYWIHVKQAPKFLSDVVEAYIGALFVDSGYDYGQVRGFFDAHIRPFFT 1412 Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGV 171 AL R T L G Sbjct: 1413 DMALYDSFASRHPVTNLTRILQDDLGC 1439 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 49/152 (32%), Gaps = 23/152 (15%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 + ++YE+LEFLGD L + + LF E V L+ + A + Sbjct: 1069 NFQGGMGKNYEQLEFLGDCFLKMATTIALFTQNPEDNEFAYHVERMLLICNQNLFNKAVD 1128 Query: 91 LDLASF---------------IRVSSDLRKDVCSFM---TSIQADVVESLIAALYLD--- 129 L + +R+ + ADV E+LI A YL Sbjct: 1129 RSLPEYVRSKSFDRRSWYPSGLRLIRGKEGSLNHRHALADKSIADVCEALIGAAYLSYAE 1188 Query: 130 -GGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 ++A V K + + D T Sbjct: 1189 TNNFDMAIRAVTAMVKNKNHLMTSWG-DYYTA 1219 >gi|213409700|ref|XP_002175620.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces japonicus yFS275] gi|212003667|gb|EEB09327.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces japonicus yFS275] Length = 377 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 10/225 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSL-LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + L+ S LEK++ F + S E HS+ ERLEFLGD + L+ Sbjct: 150 LPKLKSSKLEKQV---FMHISRAYELYPNHSNSQDLLSVHNERLEFLGDSFFNFYTTRLI 206 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F EGELS + LV ET + AR + +S KD + AD Sbjct: 207 YERFAELNEGELSKLRSKLVGNETAEKYARLYGFDKRLVLSVSAEKDELREAKKVIADTF 266 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKS---GKFRRDAKTELQEWAHAKFGVTPEYK 176 E+ + AL LDG A +V + + + ++ G + AK +L + K EY Sbjct: 267 EAYLGALALDGQEREAYRWVRRLTEPKLRETVVDGPIDKRAKAKL--YHRYKHQGFIEYA 324 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 G D + V + +G A+ +++ A AA + L+ Sbjct: 325 WVDGKGGSSDG-YVVACKFNGDEIARSWGANQKDAGARAAMKALE 368 >gi|115462923|ref|NP_001055061.1| Os05g0271300 [Oryza sativa Japonica Group] gi|50878449|gb|AAT85223.1| hypothetical protein [Oryza sativa Japonica Group] gi|55908895|gb|AAV67838.1| unknown protein [Oryza sativa Japonica Group] gi|113578612|dbj|BAF16975.1| Os05g0271300 [Oryza sativa Japonica Group] Length = 344 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 59/275 (21%), Positives = 100/275 (36%), Gaps = 65/275 (23%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +E+ + Y F + LLE+ALTH S + SY+RLEF+GD LGL S L+ + Sbjct: 32 ARVERLLRYQFRDGRLLEEALTHQSFADDAV-SYQRLEFVGDSALGLAFSNFLYLTNPTL 90 Query: 67 KEGELSVRFNSLVSAETCSQVARELDL---------------ASFIRVSSDLRKD----- 106 G LS + +S E ++VA DL FI +D Sbjct: 91 GPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTV 150 Query: 107 --VCSFM--TSIQADVVESLIAALYLDGGIEVAGTF------------------------ 138 S + + AD+VE++ AA+Y+D ++ + Sbjct: 151 PYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKRLTWLHGLQEIRWTVNTNNIKDW 210 Query: 139 ----------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 V ++ + + + T L E + ++K + G Sbjct: 211 INNFIYGKRLVTRWLFEPIITAETIDEQPVTMLHELCQKHGKMA-QFKTWQKGGMT---- 265 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V V ++G G K A+ AA + ++ Sbjct: 266 -VVNVFVAGELVGIGSSEQKVIAKLNAARDATRKL 299 >gi|54020492|ref|YP_115922.1| ribonuclease III [Mycoplasma hyopneumoniae 232] gi|53987665|gb|AAV27866.1| ribonuclease III [Mycoplasma hyopneumoniae 232] Length = 183 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 15/184 (8%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 LEFLGD ++ +S +++++F EG + + L S + + +++ L +++ + Sbjct: 2 LEFLGDSVINYAVSKVIYDNF-YKNEGNSTQIRSLLTSTSSLANATKKVGLMNYVLLGRG 60 Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTEL 161 ++AD+ ES AA+ LD G E F+ +Y +K + K +D K+ Sbjct: 61 A--SEIRENNKLKADIFESFCAAILLDQGFEKLNEFLSEYLYKDVNFDTEKQYKDPKSIF 118 Query: 162 QEWAHA-KFGVTPEY---KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 QE Y K+ D F V + G S + AE AA Sbjct: 119 QEKIQTFSTSNKIHYLHTKLV-------DGTFRVDLIWEKKKYGIGYGRSIKEAEFAAAT 171 Query: 218 EVLK 221 L Sbjct: 172 NALN 175 >gi|109390419|gb|ABG33778.1| double-strand-specific Pac1 ribonuclease [Schizosaccharomyces pombe] Length = 363 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 85/218 (38%), Gaps = 17/218 (7%) Query: 18 ANRSLLEKALTHSSISHSYQES-----------YERLEFLGDRILGLLISTLLFNHFDSA 66 + L + AL H S ++ + ERLEFLGD L + ++F+ F Sbjct: 138 RSEKLKKHALMHISRAYEIYPNQSNPNELLDIHNERLEFLGDSFFNLFTTRIIFSKFPQM 197 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 E LS V E+ + AR + +S KD + AD E+ + AL Sbjct: 198 DEESLSKLRAKFVGNESADKFARLYGFDKTLVLSYSAEKDQLRKSQKVIADTFEAYLGAL 257 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 LDG E A +V + + + + AK++L + EY+ +G Sbjct: 258 ILDGQEETAFQWVSRLLQPKIANITVQRPIDKLAKSKL--FHKYSTLGHIEYRWVDGAGG 315 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + + + +G A+ +++ A AA + L+ Sbjct: 316 SAEG-YVIACIFNGKEVARAWGANQKDAGSRAAMQALE 352 >gi|170049284|ref|XP_001855187.1| endoribonuclease Dicer [Culex quinquefasciatus] gi|167871117|gb|EDS34500.1| endoribonuclease Dicer [Culex quinquefasciatus] Length = 1665 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 38/178 (21%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+ + Y F +R+ L +ALTH+S ++ SY++LEF+GD +L LIS ++ + Sbjct: 1412 RIERILDYTFKDRTYLLQALTHASYPTNRITGSYQQLEFVGDAVLDFLISAYIYEQNPTM 1471 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFI----------------------------- 97 G+L+ ++LV+ T + + L +I Sbjct: 1472 SPGQLTDLRSALVNNITLACILVRHGLHLYILSESASLTDTVSKFVAFQEAHKHEITDQV 1531 Query: 98 -RVSSDLRKDVCS-----FMTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRA 147 +S + + + + DV ESLI A++LD G +EV + Sbjct: 1532 NLLSEESERCQGAMAEFVDVPKALGDVFESLIGAVFLDSGNDLEVTWRVIYGLMHHEI 1589 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 9/134 (6%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 KALT S Y ER E LGD L +S L EG L+ LVS Sbjct: 1185 IKALTTKSAHDVY--DLERYELLGDAFLKFSVSLFLVKKHKEWHEGHLTAVKGQLVSNRN 1242 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY- 142 A ++L +++ + K+ S A V ++ + I + + K Sbjct: 1243 LLYCAMLINLPGMMKIHTFDPKNDWSPP---LASVPHAVKQKM---ASINHSARVLYKLK 1296 Query: 143 WKQRALKSGKFRRD 156 + +++G +D Sbjct: 1297 MSEEEIQAGTIEKD 1310 >gi|158706522|sp|Q4WVE3|DCL1_ASPFU RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent helicase dcl1 Length = 1537 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 98/249 (39%), Gaps = 37/249 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFD 64 +E+ +GY F LL A+TH S+ ++ Y+RLEFLGD +L ++ LF F Sbjct: 1255 HVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFP 1314 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI--------- 114 LS ++VS + ++ +L I S+ L+ + ++ I Sbjct: 1315 DRDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQG 1374 Query: 115 --------------QADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFR 154 D+VE+ + A+++D +V F + +++ ++ Sbjct: 1375 AVDYWVVAKDPPKCLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSIYDTFAN 1434 Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGP--DHDP-RFTVVVEISGLAPAQGMDCSKRAA 211 + T L ++G T Y + P D P V + G ++ S R A Sbjct: 1435 KHPTTFLHNKLTNEYGCT-NYCLKAGELPTIDGAPATVLAAVIVHGNVISEARSSSSRYA 1493 Query: 212 EQVAAAEVL 220 + A+ + L Sbjct: 1494 KITASEKAL 1502 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 65/206 (31%), Gaps = 50/206 (24%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +A T H ++YERLEFLGD L + S LF+ + Sbjct: 1057 PDFALEAFTKDSDNTEEHRGQQIHFQRGMGKNYERLEFLGDCFLKMATSIALFSQNPNDD 1116 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK-----------DVCSFMTSIQ- 115 E + V L+ + A + + +IR S + T + Sbjct: 1117 EFDYHVNRMCLICNKNLFNTAIKKQIYRYIR-SRGFSRHIWYPDGLTLLHGKDHSTKLLS 1175 Query: 116 -----------ADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 ADV E+LI A L GG ++A V + + K Sbjct: 1176 EGKHALGEKTIADVCEALIGASLLSGGPEHRFDMATKAVSALVDSPSHRVSC----WK-- 1229 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHD 186 E+ P+Y+ G + D Sbjct: 1230 --EYI--TLYTLPKYQTEKHRGSEDD 1251 >gi|225447097|ref|XP_002270948.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 236 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 18/151 (11%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E+ +GY+F N+ LLE+A TH+S Q SYERLEF+GD +L LLI+ F + Sbjct: 29 SLEGVEQILGYSFTNKRLLEEAYTHASC-QKNQFSYERLEFMGDSVLSLLITKEQFFLYP 87 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----------------DLRKDV 107 + G L+ ++ V E ++VA + L F+R L + Sbjct: 88 DLQPGRLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQIYEFAEAIKEYPLHSNG 147 Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 + + ADVVES I A+++D V + Sbjct: 148 QIEVPKVLADVVESTIGAVFVDCNCSVDTVW 178 >gi|242039323|ref|XP_002467056.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor] gi|241920910|gb|EER94054.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor] Length = 1586 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 30/235 (12%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTL 58 +S L+ + LE ++ Y F+ + LL +A++H S+ + Y+RLEFLGD +L LLI+ Sbjct: 1173 LSKLKVFEELEAKLKYNFSVKGLLLEAVSHPSLQELGVDYCYQRLEFLGDSVLDLLITQH 1232 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------- 102 L+ GEL+ ++LVS E +Q ++ S ++ S Sbjct: 1233 LYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQVTEYVRSSLEY 1292 Query: 103 -----LRKDVCSFM-TSIQADVVESLIAALYLDGGIEV--AGTFVDKYWKQRALKSGKFR 154 +F + D++ES+ A+++D V V+ + K Sbjct: 1293 HGKENEFVQQATFKAPKVLGDIMESITGAIFIDVNFNVDLVWKIVEPLLSP-MITPDKLA 1351 Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 EL E + G + K T G + TV + L AQG D +++ Sbjct: 1352 LPPYRELLELC-SHLGCFIKSKCTS-KGEELIIEMTVQLR-DELLIAQGHDRNRK 1403 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 58/168 (34%), Gaps = 48/168 (28%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 SL+ +A+T ++ S ERLE LGD +L +I LF + EG LS + V Sbjct: 983 SLILEAIT--TLRCCETFSLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVC 1040 Query: 81 AETCSQVARELDLASFIR------------------------------------------ 98 T + L +IR Sbjct: 1041 NATLHKHGICRSLQGYIRDTAFDPRRWVAPGQISLRPFPCNCGIETAFVPFTGEYISDDP 1100 Query: 99 ---VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 V + + +D VE+L+ A Y+ GGI A +V +++ Sbjct: 1101 SFIVGKPCDRGHRWMCSKTVSDCVEALVGAYYVGGGI-TAAIWVMRWF 1147 >gi|331250710|ref|XP_003337961.1| hypothetical protein PGTG_19538 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309316951|gb|EFP93542.1| hypothetical protein PGTG_19538 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1489 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 69/273 (25%), Positives = 110/273 (40%), Gaps = 56/273 (20%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 L+ LE++IGY F + LL +ALTH S + YER E+LGD ++ + I + F Sbjct: 1107 LKCQALEEKIGYVFKEKLLLVQALTHRSANSFMTNCYEREEWLGDAVIDMWIVEHAYKRF 1166 Query: 64 DSAKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSSDLRKDVCSFM----------- 111 D A EL++ +VS + +A ++L L I +S+ + C+ Sbjct: 1167 DHATAEELTLARAKVVSNGSLGFLALKKLGLQEIIMHASENFEQACTEAIEAIKPFAKIE 1226 Query: 112 ---------------TSIQADVVESLIAALYLDGGIEV--AGTFVDKYWKQRALKSGKF- 153 I DV+E+++ A+++D G + A +D ++ + Sbjct: 1227 EYFSTIDNLFVVFDPPKILNDVLEAIVGAVFVDSGFNLQSAYRTLDIIFEDVIPGLSRLV 1286 Query: 154 RRDAKT---EL--QEWA---------HAKFGVTPEY---KVTFRS----GPDHDPRFTVV 192 RD + L Q F + P + + T R G DP +V Sbjct: 1287 ARDPLSTMLRLRDQYQCAELRRISSKQMNFNLCPIFLTGRTTIREPNPNGETKDPI-SVK 1345 Query: 193 V---EISGLAPAQGMDCSK-RAAEQVAAAEVLK 221 V E+ G A G S AEQ A+ E LK Sbjct: 1346 VCRIELHGQEIASGRHKSSASVAEQRASLEALK 1378 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 23/151 (15%) Query: 2 SALRYSTLEKRIGYAFANRSLL--EKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 +L+ +TL KR+ F SLL +ALT Y+ LE LGD L L S + Sbjct: 919 DSLQATTLFKRLD--FPTISLLHGIQALTPP--GGGVPWDYQTLETLGDAFLKLATSVHV 974 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKD 106 + EG++S + V + A + +L + I Sbjct: 975 YLSHLKKGEGDMSHVRSRSVDNAYLRRKAIQANLPASILSQRFRTDRFRDPQTEDGKELP 1034 Query: 107 VCSFMTSI----QADVVESLIAALYLDGGIE 133 +F I +DVVE+L+ A +L GGIE Sbjct: 1035 NGNFSRKIPKRVLSDVVEALLGAGFLTGGIE 1065 >gi|320527636|ref|ZP_08028810.1| RNase3 domain protein [Solobacterium moorei F0204] gi|320131957|gb|EFW24513.1| RNase3 domain protein [Solobacterium moorei F0204] Length = 373 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 62/272 (22%), Positives = 94/272 (34%), Gaps = 57/272 (20%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHF- 63 + ++ IGY F N+ LLE+A T S S E E LEF+GD+ L + I +L F Sbjct: 7 INDIQNIIGYTFKNQELLEQAFTRRSYSMENGGEHNEVLEFIGDKALDIAIVKILSEEFG 66 Query: 64 ------------------------DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 EGEL+ +V T S L L ++ + Sbjct: 67 YFNKSEQRRSNYYYSPKVYDGTFSSDKDEGELTEIKKRIVKKTTLSDAIDNLGLQHYLIM 126 Query: 100 SSDLRKDVCSFMTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDA 157 RK S + D+ E++I A+ LD I + V+ + + G Sbjct: 127 GRGDRKKHVERSNSTKEDLFEAIIGAIALDSRWDINMIQETVENMIEIDDI-IGSDEDSY 185 Query: 158 KTELQEWAHAKFGVTPEYKV-------TFRSGPDHDP---------RFTVVVEISGLAPA 201 E+Q W+ + V P+Y V PD +F V S A Sbjct: 186 IEEIQNWSLKHYDVLPDYSVCNYLPSEMNIGTPDWAKPNTMWSLINQFKRGVFDSNTQYA 245 Query: 202 Q------------GMDCSKRAAEQVAAAEVLK 221 G SK A++ A+ + Sbjct: 246 SLLILEDVPCCFIGYGNSKNQAKEEASRLAYE 277 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 9/116 (7%) Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 + + QA S +A YLD D W + +R + +L+ A Sbjct: 258 IGYGNSKNQAKEEASRLAYEYLD--------EHDLLWTIQDEIENPCKRMSVNQLETLAR 309 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221 + P Y D +P + I SK+ A++ AA +LK Sbjct: 310 RGYFSLPTYNFYEDHDEDGNPVWKCECHIDEENIFCWSTASSKKDAKKDAAWGMLK 365 >gi|295657108|ref|XP_002789127.1| abhydrolase domain-containing protein [Paracoccidioides brasiliensis Pb01] gi|226284541|gb|EEH40107.1| abhydrolase domain-containing protein [Paracoccidioides brasiliensis Pb01] Length = 740 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 25/226 (11%) Query: 19 NRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 ++SL TH ++ +++YERLE LGD + + + L+++ F + G Sbjct: 148 DKSLQTAIFTHEGVNDPTNTTTTTTSTEKNYERLELLGDAYIEIFATRLVWDTFPRLRAG 207 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 LS LV ET ++ A L ++V++++R+ T ++ D+ E+ +AA+ L Sbjct: 208 RLSQIREMLVKNETLAEYATRYGLDRRLQVAAEIRRQ-AKTWTKVRGDLFEAYVAAVILS 266 Query: 130 G---GIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-- 182 G+E+ ++ + W R ++ + K EL + K GV Y V R G Sbjct: 267 HPKRGVEMVEEWLTQLWIPRLEGVERERPVLRYKEELAKMVMDK-GVRVRY-VDEREGVQ 324 Query: 183 -PDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222 F V V + G + G SK A AA + L+ Sbjct: 325 RKGGLQTFFVGVYLDGWGFRDVCLGTGTGMSKVIAGNEAARKALEN 370 >gi|256077012|ref|XP_002574802.1| ribonuclease III [Schistosoma mansoni] gi|238660017|emb|CAZ31035.1| ribonuclease III, putative [Schistosoma mansoni] Length = 907 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 29/170 (17%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 R+ L++++GY F LL +A+TH SSI+ Y +Y+RLEFLGD ILG +IS LF Sbjct: 683 RFFQLQEKLGYYFKGIELLAEAMTHQSSINKQYWGNYQRLEFLGDSILGHIISNYLFQKC 742 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI--------- 114 ++ G L+ +++VS + V E D+ FI + K + SI Sbjct: 743 PNSSPGALTTARSTVVSNINLANVVVEHDIYPFIDFGNCSLKACIDDIKSIHRQTDSHFE 802 Query: 115 -----------------QADVVESLIAALYLD--GGIEVAGTFVDKYWKQ 145 ADV ES++ A+++D G +VA + + ++ + Sbjct: 803 RIELITKKVSSGLNVKVLADVFESILGAIFVDSNGNHQVASSIIHRFLGK 852 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 50/148 (33%), Gaps = 23/148 (15%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFD-SAKEGELSVRFNSLVSAETCSQVARELDLASF- 96 ERLEF GD L + + ++ A EG LS + SLVS +A +L + Sbjct: 546 DLERLEFYGDSFLHFIATLCVYGTNPQDADEGCLSSKRGSLVSNAHLCDIACDLKWYEYC 605 Query: 97 --IRVSSDLR-----------------KDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 S + AD+VE+LI L G+ A Sbjct: 606 TGQTFSPPEHFLPPCYSVASEACKYDPRLYTRLTDKSLADMVEALIGCFLLRSGLSAAFN 665 Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWA 165 + + + +R +LQE Sbjct: 666 LLHYFQICPEIILELNQRFF--QLQEKL 691 >gi|154301554|ref|XP_001551189.1| hypothetical protein BC1G_10104 [Botryotinia fuckeliana B05.10] gi|150855766|gb|EDN30958.1| hypothetical protein BC1G_10104 [Botryotinia fuckeliana B05.10] Length = 1842 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 79/256 (30%), Gaps = 48/256 (18%) Query: 15 YAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 Y F + LL A H + + Y+RLEFLGD +L + LF++ + L+ Sbjct: 1545 YHFKHPRLLRSAFIHPAYLFIYEQIPCYQRLEFLGDSLLDMACVNFLFHNHPTKDPQWLT 1604 Query: 73 VRFNSLVSAETCSQVARELDLASFI------------------------------RVSSD 102 ++VS + + +L + RV Sbjct: 1605 EHKMAIVSNQFLGALCVKLGFHKHLLTLDSQVQKMIADYSSDINEALIQAKTDAKRVGKV 1664 Query: 103 LRKD------VCSFMTSIQADVVESLIAALYLDGGIEV--AGTF----VDKYWKQRALKS 150 D+VE+ I A+++D + F + Y++ + Sbjct: 1665 EDDYARDYWIAVRQPPKCLPDIVEAFIGAIFVDSEYDYGEVEKFFEMHIRWYFEDMGIYD 1724 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS--GPDHDPRFTVV-VEISGLAPAQGMDCS 207 + T L + G ++ + G D V V I + S Sbjct: 1725 TYANKHPTTFLTNFLQKNMGCE-DWAPVSKEVPGEDGRKNVVVCGVIIHNKVVSTATAES 1783 Query: 208 KRAAEQVAAAEVLKRE 223 R A AA L++ Sbjct: 1784 MRYARVGAARNALRKL 1799 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 51/141 (36%), Gaps = 30/141 (21%) Query: 20 RSLLEKALT--------H----SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +A+T H ++ +YERLEFLGD L + S L+ + Sbjct: 1344 PDLALEAVTKDSDNSGEHGEEQTNFQRGMGNNYERLEFLGDCFLKMGTSISLYGLNPDSD 1403 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRV-----------SSDLRKDVCSFMTSIQ- 115 E V L+ + A +L+L +IR +L + + + Sbjct: 1404 EFRYHVDRMCLICNKNLFNTALKLELYKYIRSAAFNRRAWYPEGPELLRGKTATAPNTHK 1463 Query: 116 ------ADVVESLIAALYLDG 130 ADV E++I A L Sbjct: 1464 LGDKSVADVCEAMIGAALLSH 1484 >gi|89114026|gb|ABD61604.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L +I+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYIITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770 >gi|328772805|gb|EGF82843.1| hypothetical protein BATDEDRAFT_23044 [Batrachochytrium dendrobatidis JAM81] Length = 1492 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 94/242 (38%), Gaps = 44/242 (18%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSA 66 +E + Y F ++S+L +ALTHSS S S +Y+RLEFLGD +L +I+ L+ S+ Sbjct: 1222 RIEAVLNYTFQDKSILWEALTHSSSSFSICGLNYQRLEFLGDAVLSFIITKYLYTQLGSS 1281 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----------------------DL 103 G +S + +V + + V+ L L ++RV + Sbjct: 1282 SPGVISHLKSEMVCNQFLACVSIRLGLIDWLRVKKSDTVWIVDAYAQQVIEHLSQPADSI 1341 Query: 104 RKDVCSFM---TSIQADVVESLIAALYLDG--GIEVAGTFVDK-YWKQRALKSGKFRRDA 157 +K + M I DV E+++ A+++D IE FV K + +D Sbjct: 1342 QKIFWAHMTTAPKICGDVYEAILGAIFVDSKFSIEKVDEFVLNSLIKPWWDHFSQIVQDG 1401 Query: 158 KTELQ----E---WAHAKFGV-TPEYKVTFRSGPDHDPRFTVV-VEISGLAPAQGMDCSK 208 K LQ E EY T TV V+ + + K Sbjct: 1402 KVVLQNSIVELRDLVAEHLKCSAVEYTYTHIQNTA-----TVAIVKCHDKIIGKAIGTGK 1456 Query: 209 RA 210 R Sbjct: 1457 RD 1458 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 57/144 (39%), Gaps = 16/144 (11%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F N L+ L SS SYERLE LGD L + S LF S EG L+ Sbjct: 1048 FINIETLQTVLVASST--DLPYSYERLEILGDSFLKIHQSLHLFALNPSQDEGWLTTSRM 1105 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRK----------DVCSFMTSIQADVVESLIAAL 126 + A E+ L I + RK + S I ADV E++I Sbjct: 1106 VAEQNLELCRRATEVGLQGLILTTRFSRKQWVPPAKGHDSMQSMPKKILADVTEAIIGGC 1165 Query: 127 YLDGGI----EVAGTFVDKYWKQR 146 +DGGI E + +++ ++ Sbjct: 1166 LIDGGIVGASEAVRSLLNRDYQSE 1189 >gi|328716581|ref|XP_003245985.1| PREDICTED: endoribonuclease Dcr-1-like isoform 2 [Acyrthosiphon pisum] Length = 1489 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 4/131 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + E+ +GY F +RS L +A+TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1357 FESFEQHLGYHFQDRSYLLQAMTHASYYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 1416 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLI 123 G L+ ++LV+ + +A + + +S L VC F+T IQ + ++ Sbjct: 1417 QHSPGALTDLRSALVNNTIFASLAVRNGFHKYFKHLSPGLSDVVCRFVT-IQEENGHTID 1475 Query: 124 AALYLDGGIEV 134 + L G + V Sbjct: 1476 EEI-LSGAMNV 1485 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S+L +ALT S+ + + ERLE +GD L I+ L+ D+ EG+LS + V Sbjct: 1124 PSVLLQALTMSNANDGI--NLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQV 1181 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVC 108 S ++ + + + D Sbjct: 1182 SNLNLYRLGKLKMFGERMISTKFEPHDNW 1210 >gi|331236185|ref|XP_003330752.1| hypothetical protein PGTG_12289 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309309742|gb|EFP86333.1| hypothetical protein PGTG_12289 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1470 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 96/263 (36%), Gaps = 58/263 (22%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E++I Y F + L +ALTH S + YER E+LGD ++ + I + FD+A Sbjct: 1115 EQIERKINYVFKEKLFLVQALTHRSANSFLTNCYEREEWLGDAVIDMWIVEHAYKRFDNA 1174 Query: 67 KEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSSDLRKDVCSFM-------------- 111 ELS+ + + +A ++L L FI SD C+ Sbjct: 1175 TADELSLARAKVACNGSLGFLAIKKLGLHEFIMHKSDNFHQACAEAIEAIEPFTKISEFF 1234 Query: 112 ------------TSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQRALKSGKF-RRD 156 I D +E+++ A+++D G+ A +D ++ + RD Sbjct: 1235 SNINNLFVVFDPPKILNDALEAIVGAVFVDSGLNLPTAYRVLDVIFEDVTPSLSRLAARD 1294 Query: 157 AKTEL-------Q--EWAHAK---FGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLA 199 + L Q E PE G + P V V + G Sbjct: 1295 PVSTLLRLRDRYQCTELLRTTTTINEPNPE-------GEEKTP---VSVRVCRIEFHGQQ 1344 Query: 200 PAQGMD-CSKRAAEQVAAAEVLK 221 G S AEQ A+ E +K Sbjct: 1345 IGIGRHQSSTSVAEQRASLEAIK 1367 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 7/103 (6%) Query: 1 MSALRYSTLEKRIGYA---FANRSLL--EKALTHSSISHSYQESYERLEFLGDRILGLLI 55 ++ L + L+ + + F SL ALT + Y+ LE +GD L L Sbjct: 918 LTRLLHDALQAKFLFKRLDFPAISLPHGIHALTPPGVG--VPWDYQTLETVGDAFLKLAT 975 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S ++ EG++S + + A + +L I Sbjct: 976 SVHVYISHLRKGEGDMSHVRARSIDNAYLRRKAVQANLPGSIL 1018 >gi|242215871|ref|XP_002473747.1| predicted protein [Postia placenta Mad-698-R] gi|220727142|gb|EED81071.1| predicted protein [Postia placenta Mad-698-R] Length = 1725 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 25/185 (13%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ L++ +GY F + LL +A+TH S + SY+RLEFLGD ++ L + L+N F Sbjct: 1116 FTLLQESLGYRFRSGRLLLEAMTHPSFNSFETSSYQRLEFLGDAVVDLAVMRYLYNKFPQ 1175 Query: 66 AKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVS------------------SDLRKD 106 A G+LS + V A + + VA + L L + V+ S+ Sbjct: 1176 ATSGQLSWARSRAVCAPSLASVAVKRLGLHKLLLVNNVELSIAINNYVPILEELSNEELI 1235 Query: 107 VCSFM---TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQ-RALKSGKFRRDAKTE 160 ++ +DV+ES++ A+ +D E+A + + + S RD +E Sbjct: 1236 HNAWKQDPPKAISDVMESVLGAVLVDSDYNWEIACSVSEMVMGDLLVVLSPNLPRDPISE 1295 Query: 161 LQEWA 165 L W Sbjct: 1296 LMIWV 1300 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LL +ALT S + + + +RLE LGD +L L LFN F EG+L + VS Sbjct: 949 DLLIQALTIPSANAGF--NNQRLETLGDSVLKLTTVVHLFNRFPFRHEGQLDTLRRNSVS 1006 Query: 81 AETCSQVARELDLASFI 97 T A+E+ L ++ Sbjct: 1007 NRTLLARAKEVGLEEYL 1023 >gi|145613552|ref|XP_363615.2| hypothetical protein MGG_01541 [Magnaporthe oryzae 70-15] gi|145020615|gb|EDK04744.1| hypothetical protein MGG_01541 [Magnaporthe oryzae 70-15] Length = 1534 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 83/266 (31%), Gaps = 54/266 (20%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S ++ ++GY F N LL A H S + SY+RLEFLGD +L ++ LF Sbjct: 1187 SQIKNKMGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLLDMVCVDYLFKKHP 1246 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99 L+ ++VS + VA L + Sbjct: 1247 DKDPQWLTEHKMAMVSNQFFGCVAVGLGFHRHLIHMQPALGGSITEWAELVTKKREEARQ 1306 Query: 100 -----SSDLRKD------VCSFMTSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQR 146 D++E+ + AL++D G + F D++ K Sbjct: 1307 LAVRRGQREEDYARDFWIEVHHPPKCLPDILEAYVGALFVDTGYDYSAVVGFFDRHIKPY 1366 Query: 147 ALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRSGPD---------HDPRFTVVV 193 + + T + +FG + +++ PD + Sbjct: 1367 FADMSIYDMYSSKHPVTHITSIITTQFGCS-SFRLMVHEIPDDVQGEGLVTGAVKVVAAC 1425 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEV 219 I G + S R A+ A + Sbjct: 1426 MIHGEVRCHAVAASGRYAKLAVAKQA 1451 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 55/154 (35%), Gaps = 26/154 (16%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 + ++YERLEFLGD L + S L+ E E V + + A E Sbjct: 1016 NFQSGMGQNYERLEFLGDCFLKMATSIALYTLV-EGDEFEYHVERMLDICNKNLLNWALE 1074 Query: 91 LDLASFIR---------------VSSD---LRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +L IR + D + ADV E+LI A YL Sbjct: 1075 SNLQEHIRSKSFNRRTWYPPGLKLLKGKKTEVDDEHALGDKSIADVCEALIGAAYLTAQA 1134 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTE-LQEWA 165 + + F A+K+ +KT +Q W+ Sbjct: 1135 QSSPNF------DLAVKAVTVMTHSKTHTMQAWS 1162 >gi|158706447|sp|A4RKC3|DCL1_MAGO7 RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease DCL1; Includes: RecName: Full=ATP-dependent helicase DCL1 Length = 1591 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 83/266 (31%), Gaps = 54/266 (20%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S ++ ++GY F N LL A H S + SY+RLEFLGD +L ++ LF Sbjct: 1244 SQIKNKMGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLLDMVCVDYLFKKHP 1303 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99 L+ ++VS + VA L + Sbjct: 1304 DKDPQWLTEHKMAMVSNQFFGCVAVGLGFHRHLIHMQPALGGSITEWAELVTKKREEARQ 1363 Query: 100 -----SSDLRKD------VCSFMTSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQR 146 D++E+ + AL++D G + F D++ K Sbjct: 1364 LAVRRGQREEDYARDFWIEVHHPPKCLPDILEAYVGALFVDTGYDYSAVVGFFDRHIKPY 1423 Query: 147 ALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRSGPD---------HDPRFTVVV 193 + + T + +FG + +++ PD + Sbjct: 1424 FADMSIYDMYSSKHPVTHITSIITTQFGCS-SFRLMVHEIPDDVQGEGLVTGAVKVVAAC 1482 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEV 219 I G + S R A+ A + Sbjct: 1483 MIHGEVRCHAVAASGRYAKLAVAKQA 1508 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 55/154 (35%), Gaps = 26/154 (16%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 + ++YERLEFLGD L + S L+ E E V + + A E Sbjct: 1073 NFQSGMGQNYERLEFLGDCFLKMATSIALYTLV-EGDEFEYHVERMLDICNKNLLNWALE 1131 Query: 91 LDLASFIR---------------VSSD---LRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +L IR + D + ADV E+LI A YL Sbjct: 1132 SNLQEHIRSKSFNRRTWYPPGLKLLKGKKTEVDDEHALGDKSIADVCEALIGAAYLTAQA 1191 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTE-LQEWA 165 + + F A+K+ +KT +Q W+ Sbjct: 1192 QSSPNF------DLAVKAVTVMTHSKTHTMQAWS 1219 >gi|89114046|gb|ABD61614.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770 >gi|89114024|gb|ABD61603.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770 >gi|89114020|gb|ABD61601.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770 >gi|89114022|gb|ABD61602.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770 >gi|89114040|gb|ABD61611.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770 >gi|89114050|gb|ABD61616.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770 >gi|89114048|gb|ABD61615.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770 >gi|89114042|gb|ABD61612.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770 >gi|89114038|gb|ABD61610.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770 >gi|89114032|gb|ABD61607.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770 >gi|89114044|gb|ABD61613.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770 >gi|89114036|gb|ABD61609.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770 >gi|89114030|gb|ABD61606.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770 >gi|89114034|gb|ABD61608.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770 >gi|78099743|gb|ABB20894.1| dicer-like protein [Oryza sativa Indica Group] Length = 1116 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 24/185 (12%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHF 63 LE ++ Y F+ + LL +A+TH S+ + Y+RLEFLGD +L LL++ L+ Sbjct: 720 DIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATH 779 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-------------LRKDVCS- 109 GEL+ ++LVS E +Q ++ S ++ S L Sbjct: 780 TDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLGQITEYVRSNLECQGKES 839 Query: 110 --------FMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160 + + D++ES+ A++LD V + + + + K E Sbjct: 840 EFLQHTTCKVPKVLGDIMESIAGAVFLDTDFNVDMVWEIFEPLLSPLITPDKLALPPYRE 899 Query: 161 LQEWA 165 L E Sbjct: 900 LLELC 904 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 72/204 (35%), Gaps = 58/204 (28%) Query: 7 STLEKRIGYAFANR--SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S L + IGY + +L+ +A+T ++ S ERLE LGD +L ++ LF + Sbjct: 512 SQLRREIGYN-QHIPVTLILEAIT--TLRCCETFSLERLELLGDSVLKYVVGCDLFLRYP 568 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------------------- 98 EG+LS + V T + L ++R Sbjct: 569 MKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGI 628 Query: 99 -------------------VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 V + + +D VE+L+ A Y+ GGI A +V Sbjct: 629 ETAFVPSHRRYIRDDPSFVVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGI-AAALWV 687 Query: 140 DKYWKQRALKSGKFRRDAKTELQE 163 +++ + D K LQE Sbjct: 688 MRWFG------IDIKCDMK-LLQE 704 >gi|89114028|gb|ABD61605.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEKFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111 G L+ ++LV+ + +A F R +S L + F+ Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125 LS + V+ ++ R L ++ + D C ++ ++ ++LI A Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770 >gi|226295027|gb|EEH50447.1| abhydrolase domain-containing protein [Paracoccidioides brasiliensis Pb18] Length = 723 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 25/226 (11%) Query: 19 NRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 ++SL TH ++ +++YERLE LGD + + + L+++ F + G Sbjct: 153 DKSLQTAIFTHEGVNDPTNTTTTTASTEKNYERLELLGDAYIEIFATRLVWDTFPRLRAG 212 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 LS LV ET ++ A L ++V++++R+ T ++ D+ E+ +AA+ L Sbjct: 213 RLSQIREMLVKNETLAEYATRYGLDRRLQVAAEIRRQ-AKTWTKVRGDLFEAYVAAVILS 271 Query: 130 G---GIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-- 182 G+E+ ++ + W R ++ + K EL + K GV Y V R G Sbjct: 272 HPKRGVEMVEEWLTQLWIPRLEGVERERPVLRYKEELAKMVMDK-GVRVRY-VDEREGVQ 329 Query: 183 -PDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222 F V V + G + G SK A AA + L+ Sbjct: 330 RKGGLQTFFVGVYLDGWGFRDVCLGTGTGMSKVIAGNEAARKALEN 375 >gi|218184775|gb|EEC67202.1| hypothetical protein OsI_34085 [Oryza sativa Indica Group] Length = 1093 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 24/185 (12%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHF 63 LE ++ Y F+ + LL +A+TH S+ + Y+RLEFLGD +L LL++ L+ Sbjct: 726 DIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATH 785 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-------------LRKDVCS- 109 GEL+ ++LVS E +Q ++ S ++ S L Sbjct: 786 TDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKES 845 Query: 110 --------FMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160 + + D++ES+ A++LD V + + + + K E Sbjct: 846 EFLQHTTCKVPKVLGDIMESIAGAVFLDTDFNVDMVWEIFEPLLSPLITPDKLALPPYRE 905 Query: 161 LQEWA 165 L E Sbjct: 906 LLELC 910 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 55/168 (32%), Gaps = 53/168 (31%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98 ERLE LGD +L ++ LF + EG+LS + V T + L ++R Sbjct: 551 ERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDN 610 Query: 99 -------------------------------------------VSSDLRKDVCSFMTSIQ 115 V + + Sbjct: 611 AFDPRRWVAPGQISLRPFPCNCGIETAFVPSHRRYIRDDPSFVVGKPCDRGHRWMCSKTI 670 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 +D VE+L+ A Y+ GGI A +V +++ + D K LQE Sbjct: 671 SDCVEALVGAYYVGGGI-AAALWVMRWFG------IDIKCDMK-LLQE 710 >gi|160285502|pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of Human Dicer gi|160285503|pdb|2EB1|B Chain B, Crystal Structure Of The C-Terminal Rnase Iii Domain Of Human Dicer gi|160285504|pdb|2EB1|C Chain C, Crystal Structure Of The C-Terminal Rnase Iii Domain Of Human Dicer Length = 200 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 33/166 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 8 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107 G L+ ++LV+ + +A + D + + + + + + Sbjct: 68 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 127 Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGIEVAGTF 138 S + D+ ESL A+Y+D G+ + + Sbjct: 128 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVW 173 >gi|313906469|ref|ZP_07839804.1| ribonuclease III [Eubacterium cellulosolvens 6] gi|313468696|gb|EFR64063.1| ribonuclease III [Eubacterium cellulosolvens 6] Length = 365 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 94/261 (36%), Gaps = 47/261 (18%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDS 65 + ++ +IGY F N LL +A S + E+ E LEF+GD +L + L + + Sbjct: 9 TVVQNQIGYEFQNPLLLRQAFVRKSYTEENGGENNEVLEFIGDTVLSTAVMRYLTEKYGN 68 Query: 66 AK----------------------EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 A EGELS L +T ++ EL F+ + Sbjct: 69 APSFKRPIWPNTPQKPMDFHCEKTEGELSRLKQKLTEKKTLARKIDELGFDKFLIMGKGD 128 Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEV--AGTFVDKYWKQRALKSGKFRRDAKTEL 161 + S++ D+ E+++ A+ LD + + V+ ++ + D + Sbjct: 129 IGQNMTKQASVKEDLFEAILGAVALDSSFDYKKIQSVVEIMLHPDSIVNDGEEADYVQLI 188 Query: 162 QEWAHAKFGVTP--EYKVT--FRSGPDHDPRFTVVV----------------EI-SGLAP 200 EW +A FG P Y+ S ++P V+V I L Sbjct: 189 YEWDNA-FGAIPYFRYRQEPYGISLSPYNPEVIVIVPDQRSSFSELCYTCEMSIRKDLPR 247 Query: 201 AQGMDCSKRAAEQVAAAEVLK 221 + SK A Q A K Sbjct: 248 FKAYGSSKAIARQNACEAAYK 268 >gi|170090528|ref|XP_001876486.1| predicted protein [Laccaria bicolor S238N-H82] gi|164647979|gb|EDR12222.1| predicted protein [Laccaria bicolor S238N-H82] Length = 356 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 98/282 (34%), Gaps = 84/282 (29%) Query: 24 EKALTHSSI-----------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 ++ TH S E+ E LGD ++GL +++L+F + + G + Sbjct: 77 QQVYTHRSFYARPTHIFEDHPDDPSPDNEKYEHLGDTVIGLSVTSLMFEMYPGLRVGPST 136 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +V T ++++ L +R+ + T+IQADV ES + LYLD G+ Sbjct: 137 KIRAMIVGNFTLAEISLRYKLPDRLRL-HPAQSITLRASTNIQADVFESFVGGLYLDQGL 195 Query: 133 EVAGTFVDKYWKQRALKSGKFRR----------------------------------DAK 158 E +++ ++ + + R D Sbjct: 196 EAVKAWLNPLFRPFVTAAYRIVRQQHGLPPLATPPPSASASASPSSSSSPSPSPIHPDPS 255 Query: 159 T---------------ELQ------EWAHAKFGVTPEYKVTFRSG------PDH------ 185 T +LQ EW ++ G V +G P H Sbjct: 256 TTSIGATIGHLALFNQQLQKNNRQVEWVYSDGGEL---SVGGGNGYCDPGVPAHLLVRGT 312 Query: 186 --DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P + V V + G +G +K+AA AA E L++ GI Sbjct: 313 QTTPVWYVKVMVDGEFYGRGRGNTKKAARNEAAKEGLEKMGI 354 >gi|317133782|ref|YP_004089693.1| ribonuclease III [Ruminococcus albus 7] gi|315450244|gb|ADU23807.1| ribonuclease III [Ruminococcus albus 7] Length = 506 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 91/257 (35%), Gaps = 47/257 (18%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH- 62 S L GY F N +LL +A T + Y E+ EFLG+ +L +++ + Sbjct: 145 VSYLSSITGYKFQNENLLRQAFTRKAFKEEYHLTRCSEQFEFLGNAVLNAMVTKEIVKQS 204 Query: 63 --------------FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 +G ++ V+ E ++ A L FI +K Sbjct: 205 ILNLPEYVDGVAWLNSERDKGYMTKLRTQYVNKEFLAERATTLGFDRFILYGKGEKKSQN 264 Query: 109 SFMTSIQADVVESLIAALYLDGGIE------VAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 S D++E++I A+ D + V ++ + + Sbjct: 265 SR-----GDIIEAIIGAVAFDCNWDWSTLEKVVFNLINFCIPHLGHECYFDEMN------ 313 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE---------ISGLAPAQG-MDCSKRAAE 212 +W FG PEYKV ++ PD F V+ I + G ++ A+ Sbjct: 314 KWHQKHFGKIPEYKVFQKNKPDDTECFECVIRFSLPENDKGIETIQEKVGKEGSTRSLAK 373 Query: 213 QVAAAEV---LKREGIW 226 + AA + LK G+W Sbjct: 374 ENAAKKAVDFLKEIGLW 390 Score = 42.0 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 6/80 (7%) Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + + + DA +LQE K+ PEY+ + + + Sbjct: 385 KEIGLWLVLENINIEPRVEDAINQLQELYQKKYIDKPEYEFVRI-----AKVWACECKYN 439 Query: 197 GLAPAQGMDCSKRAAEQVAA 216 G+ +K A++ AA Sbjct: 440 GIQNF-AYSKNKTDAKKKAA 458 >gi|167046039|gb|ABZ10551.1| dicer 2 [Nematostella vectensis] Length = 1162 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 75/183 (40%), Gaps = 42/183 (22%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFN 61 + +E +GY F +R +L +ALTH+S +Y SYE+LEFLGD +L L++ + Sbjct: 934 ELALVEASLGYTFRDRDILLQALTHTSYPRAYSSVNSSYEQLEFLGDALLDYLVTRHVLQ 993 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----------------RVSSDLRK 105 F G ++ +++V+ + + + + D + R+S K Sbjct: 994 RFPRLSPGAITDLRSAVVNNYSLACLTIQRDFHKHMRSMSMALFKVVRRFVRRLSEIEEK 1053 Query: 106 D-------------------VCS--FMTSIQADVVESLIAALYLDGGI--EVAGTFVDKY 142 + + + D+ E+L+ ALY+D G E+A + + Sbjct: 1054 ETRPDQVYSKLLLTTVEDGRGGEAIEVPKVLGDLFEALLGALYVDCGRDEELAWSVIYPL 1113 Query: 143 WKQ 145 Sbjct: 1114 LTP 1116 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 2/83 (2%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +L+ +ALT +S + +ERLE GD + IS LL++ F + EG LS VS Sbjct: 582 TLILRALTTTSANDII--DHERLEIYGDAFIKYAISELLYSDFPNVNEGRLSFLRGLRVS 639 Query: 81 AETCSQVARELDLASFIRVSSDL 103 + + R LA I Sbjct: 640 NQQLFYLGRSRGLAPLILTKPFE 662 >gi|297610684|ref|NP_001064898.2| Os10g0485600 [Oryza sativa Japonica Group] gi|18087887|gb|AAL59041.1|AC087182_24 putative RNA helicase [Oryza sativa Japonica Group] gi|31432753|gb|AAP54346.1| Type III restriction enzyme, res subunit family protein, expressed [Oryza sativa Japonica Group] gi|255679506|dbj|BAF26812.2| Os10g0485600 [Oryza sativa Japonica Group] Length = 1458 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 24/185 (12%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHF 63 LE ++ Y F+ + LL +A+TH S+ + Y+RLEFLGD +L LL++ L+ Sbjct: 1103 DIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATH 1162 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-------------LRKDVCS- 109 GEL+ ++LVS E +Q ++ S ++ S L Sbjct: 1163 TDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKES 1222 Query: 110 --------FMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160 + + D++ES+ A+++D V + + + + K E Sbjct: 1223 EFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPLITPDKLALPPYRE 1282 Query: 161 LQEWA 165 L E Sbjct: 1283 LLELC 1287 Score = 64.7 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 55/168 (32%), Gaps = 53/168 (31%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98 ERLE LGD +L ++ LF + EG+LS + V T + L ++R Sbjct: 928 ERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDN 987 Query: 99 -------------------------------------------VSSDLRKDVCSFMTSIQ 115 V + + Sbjct: 988 AFDPRRWVAPGQISLRPFPCNCGIETAFVPSHRRYIRDDPSFFVGKPCDRGHRWMCSKTI 1047 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 +D VE+L+ A Y+ GGI A +V +++ + D K LQE Sbjct: 1048 SDCVEALVGAYYVGGGI-AAALWVMRWFG------IDIKCDMK-LLQE 1087 >gi|251764789|sp|Q7XD96|DCL3B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3b; AltName: Full=Dicer-like protein 3b; Short=OsDCL3b Length = 1637 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 24/185 (12%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHF 63 LE ++ Y F+ + LL +A+TH S+ + Y+RLEFLGD +L LL++ L+ Sbjct: 1240 DIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATH 1299 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-------------LRKDVCS- 109 GEL+ ++LVS E +Q ++ S ++ S L Sbjct: 1300 TDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKES 1359 Query: 110 --------FMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160 + + D++ES+ A+++D V + + + + K E Sbjct: 1360 EFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPLITPDKLALPPYRE 1419 Query: 161 LQEWA 165 L E Sbjct: 1420 LLELC 1424 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 72/204 (35%), Gaps = 58/204 (28%) Query: 7 STLEKRIGYAFANR--SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S L + IGY + +L+ +A+T ++ S ERLE LGD +L ++ LF + Sbjct: 1032 SQLRREIGYN-QHIPVTLILEAIT--TLRCCETFSLERLELLGDSVLKYVVGCDLFLRYP 1088 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------------------- 98 EG+LS + V T + L ++R Sbjct: 1089 MKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGI 1148 Query: 99 -------------------VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 V + + +D VE+L+ A Y+ GGI A +V Sbjct: 1149 ETAFVPSHRRYIRDDPSFFVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGI-AAALWV 1207 Query: 140 DKYWKQRALKSGKFRRDAKTELQE 163 +++ + D K LQE Sbjct: 1208 MRWFG------IDIKCDMK-LLQE 1224 >gi|222613035|gb|EEE51167.1| hypothetical protein OsJ_31945 [Oryza sativa Japonica Group] Length = 1570 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 24/185 (12%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHF 63 LE ++ Y F+ + LL +A+TH S+ + Y+RLEFLGD +L LL++ L+ Sbjct: 1172 DIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATH 1231 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-------------LRKDVCS- 109 GEL+ ++LVS E +Q ++ S ++ S L Sbjct: 1232 TDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKES 1291 Query: 110 --------FMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160 + + D++ES+ A+++D V + + + + K E Sbjct: 1292 EFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPLITPDKLALPPYRE 1351 Query: 161 LQEWA 165 L E Sbjct: 1352 LLELC 1356 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 72/204 (35%), Gaps = 58/204 (28%) Query: 7 STLEKRIGYAFANR--SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S L + IGY + +L+ +A+T ++ S ERLE LGD +L ++ LF + Sbjct: 964 SQLRREIGYN-QHIPVTLILEAIT--TLRCCETFSLERLELLGDSVLKYVVGCDLFLRYP 1020 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------------------- 98 EG+LS + V T + L ++R Sbjct: 1021 MKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGI 1080 Query: 99 -------------------VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 V + + +D VE+L+ A Y+ GGI A +V Sbjct: 1081 ETAFVPSHRRYIRDDPSFFVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGI-AAALWV 1139 Query: 140 DKYWKQRALKSGKFRRDAKTELQE 163 +++ + D K LQE Sbjct: 1140 MRWFG------IDIKCDMK-LLQE 1156 >gi|299473645|emb|CBN78039.1| RNAseIII [Ectocarpus siliculosus] Length = 523 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 26/167 (15%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN--H 62 +E +GY F +R LL ALTH S + ++ LE+LGD +L L +S+ LF Sbjct: 16 AVEHALGYCFGDRRLLLTALTHRSFCNETHTASGDFDELEWLGDSVLQLAVSSWLFRSAK 75 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G+LS V + C AR+L+L ++R+ T I AD E++ Sbjct: 76 GSRRSSGQLSATRQRFVDSHACESFARQLNLLPYLRIGHGQPVGG----TKILADCFEAV 131 Query: 123 IAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAK--TELQE 163 + A+Y+D G +E + + K LQE Sbjct: 132 LGAVYVDAGGCSDLEPIHAILARVIPS-----------YKHGRRLQE 167 >gi|316961980|gb|EFV48479.1| endoribonuclease Dicer [Trichinella spiralis] Length = 325 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 91/251 (36%), Gaps = 50/251 (19%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTL 58 +A ++ E +IGY F N++ L +ALTHS + +SYERLEFLGD IL LIS Sbjct: 59 TAYDLNSFEAKIGYRFTNKAYLIQALTHSLYNEVETPVTDSYERLEFLGDAILDYLISRH 118 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSFM------ 111 L++ G LS +LV+ A L + F+ L++ V Sbjct: 119 LYSSKRIRSPGLLSDLRAALVNNYFLYFNAELLSVNERFVLAMRGLKESVNFHNELYMME 178 Query: 112 -------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 D+ ES+ A++LD +A + Y+ A + GK Sbjct: 179 EEQDDDEKETSEFAEHVEVPKPLGDIFESVAGAIFLDSHCSLATVW-QVYYNMIAEEIGK 237 Query: 153 FRRDAKT--------------ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 R D + L E + + G V V ++G Sbjct: 238 QRSDFTSFNKCLCHPPISPVRHLLELEPERVQFNI---LDREEGNSG---VHVQVVVTGK 291 Query: 199 APAQGMDCSKR 209 G S R Sbjct: 292 GSFIGSGKSYR 302 >gi|46117132|ref|XP_384584.1| hypothetical protein FG04408.1 [Gibberella zeae PH-1] Length = 1451 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 95/272 (34%), Gaps = 69/272 (25%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE+ IGY F +SLL +A+TH S + Q SYE+LEFLGD +L ++ T +F Sbjct: 1157 LEELIGYTFQKKSLLIEAMTHGSYAADGQQRSYEQLEFLGDAVLDYIVVTRMFQSDPPVP 1216 Query: 68 EGELSVRFNSLVSAETCSQVARELDL----------------------ASFIRVSSDLRK 105 G L + ++ +A+ + + L F+R SS Sbjct: 1217 NGRLHMVKTAMANADFLAFTNMQHGLRRPEVEINENGEPVPTEVSLPIWKFMRHSSPEMG 1276 Query: 106 DVCS-------------------------------FMTSIQADVVESLIAALYLDGG-IE 133 + + +D+ E+ + A+++D G IE Sbjct: 1277 RIMNETQARFESLQEEINEARTNGKHYPWTLLARLHPKKFYSDIFEATLGAIWVDSGDIE 1336 Query: 134 VAGTFVDKY----WKQRALKSGKFRRDAKTELQEWA--HAKFGVTPEYKVTFRSGPDHDP 187 V F+ K+ + R L + K EL + A Y T GP Sbjct: 1337 VCTAFLHKFGVLPYLDRILSDNIHVQHPKEELAKLAIDQKM-----TYDYTAVDGP--IK 1389 Query: 188 RFTVVVEISGLAPAQGMDC-SKRAAEQVAAAE 218 + ++ +K A AA E Sbjct: 1390 EYLCTAKVGDRVVGVVSGALNKAEAMTKAAEE 1421 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 20/147 (13%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 + L+ +A++ S + YER+EFLGD +L ++ EG L+ + Sbjct: 983 TDLQLVIEAISSRSAAEPV--DYERIEFLGDSVLKYCTVIQAYSEHPFWPEGLLNHFKDR 1040 Query: 78 LVSAETCSQVARELDLASFIR-----------VSSDLRKDV------CSFM-TSIQADVV 119 LVS +++ E L+ FI + D D F+ ADVV Sbjct: 1041 LVSNTRLTRMCLETGLSKFIFSKTFTGIKWRPLYRDEFLDKKPVDGVSRFVGPKTLADVV 1100 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR 146 E+L+ A Y DGGI A + + + Sbjct: 1101 EALVGASYQDGGISKALECIKVFLGTK 1127 >gi|317148472|ref|XP_001822794.2| RNase3 domain protein [Aspergillus oryzae RIB40] Length = 354 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 87/219 (39%), Gaps = 25/219 (11%) Query: 23 LEKA-LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LE+A TH +S+ +++Y+RLE LGD + L+ + L++ F G +S LV Sbjct: 125 LERAVFTHPGVSNDTEKTYDRLEILGDAYIELIATKLIWKRFREIPSGRISQIRELLVKN 184 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTF 138 ET ++ A L V D + + T +AD+ E+ +AA + G V + Sbjct: 185 ETLAEYAAGYGLDRKAAVPQDYLRQSKRW-TKTRADIFEAYVAAAIISHPVDGYRVVENW 243 Query: 139 VDKYWKQRALKSG--KFRRDAKTELQEWAHAK---FGVTPEYKVTFRSGPDHD----PRF 189 + + W + + G K +AK E K G+ Y P F Sbjct: 244 LTQLWLPKLSELGIQKPVLNAK----ELLARKIMGKGIKLRY--IDEHPPAQQGPGMQTF 297 Query: 190 TVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V V + + G +K A AA + L E Sbjct: 298 FVGVYLTGWGWNNKHLGSGQGPNKTIAGNEAAHQALSNE 336 >gi|255953957|ref|XP_002567731.1| Pc21g06890 [Penicillium chrysogenum Wisconsin 54-1255] gi|211589442|emb|CAP95586.1| Pc21g06890 [Penicillium chrysogenum Wisconsin 54-1255] Length = 1495 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 71/183 (38%), Gaps = 32/183 (17%) Query: 11 KRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +++GY F LL A TH S + + Y+RLEFLGD +L ++ LF+ F + Sbjct: 1217 EKVGYDFKYPRLLRSAFTHPSYPLAWAKVPCYQRLEFLGDALLDMVCVEHLFHRFPNRDP 1276 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSD----------------LRKDVC---- 108 L+ ++VS + +A +L L ++ S+ + Sbjct: 1277 QWLTEHKMAMVSNKFLGALAVKLGLHLHLQHFSNPLMIQNSKYAEEIQLAESESNGEVDY 1336 Query: 109 ----SFMTSIQADVVESLIAALYLDGGIEVA------GTFVDKYWKQRALKSGKFRRDAK 158 S D++E+ + A+++D G + + ++ ++ R Sbjct: 1337 WLSTSDSPKCLPDMLEAYLGAIFVDSGFDFTVIEAFFQRHILPFFHDMSIYDTFANRHPT 1396 Query: 159 TEL 161 T L Sbjct: 1397 TFL 1399 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 65/178 (36%), Gaps = 39/178 (21%) Query: 21 SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +A T H S + ++YERLE LGD +L + S LF E Sbjct: 1017 EYALEAFTKDSDNTEEHRSLQIHVQRGMGKNYERLELLGDSVLKMATSISLFAQNPDDDE 1076 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR-------------VSSDLRKDVCSFMTS-- 113 + V L+ + + A EL L +IR +S + +D F+ S Sbjct: 1077 YDYHVNRMCLICNKNLFKNAIELKLYEYIRSRGFSRHMWYPPGLSLEYGRDHAKFIDSEG 1136 Query: 114 -------IQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 ADV E+LI A L GG ++A V + + + +D + Sbjct: 1137 KHSLAEKTIADVCEALIGASLLSGGDDNRYDMAIKAVTIFVNSQN-HTATSWKDYISA 1193 >gi|297804712|ref|XP_002870240.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata] gi|297316076|gb|EFH46499.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata] Length = 214 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 17/145 (11%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 L +LEK + Y F ++ LL +A T +S +SYE LE LGD IL + I + Sbjct: 28 LEIESLEKILNYKFKDKRLLVQAFTDASYVDDKCDSYEILELLGDSILNMSIIDEFIKLY 87 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----------------DLRKD 106 G L+ V E ++VA + L ++R L + Sbjct: 88 PKESPGPLTKLRAVNVDTEKLARVAVKHQLYRYLRHKKPLLEEQILEFVEAMEKYPLHSN 147 Query: 107 VCSFMTSIQADVVESLIAALYLDGG 131 + + AD+VES I AL+ D Sbjct: 148 GLLKVPKVLADIVESTIGALFRDCN 172 >gi|119478976|ref|XP_001259517.1| RNase3 domain protein [Neosartorya fischeri NRRL 181] gi|158706438|sp|A1DE13|DCL1_NEOFI RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent helicase dcl1 gi|119407671|gb|EAW17620.1| RNase3 domain protein [Neosartorya fischeri NRRL 181] Length = 1538 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 98/249 (39%), Gaps = 37/249 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFD 64 +E+ +GY F LL A+TH S+ ++ Y+RLEFLGD +L ++ LF F Sbjct: 1256 HVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFP 1315 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI--------- 114 L+ ++VS + ++ +L I S+ L+ + ++ I Sbjct: 1316 DRDPQWLTEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIESAQAESRG 1375 Query: 115 --------------QADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFR 154 D+VE+ + A+++D +V F + +++ ++ Sbjct: 1376 AVDYWVVAKDPPKCLPDMVEAYLGAIFVDSKFDFQVIEVFFERQIKPFFEDMSIYDTFAN 1435 Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGP--DHDPR-FTVVVEISGLAPAQGMDCSKRAA 211 + T L ++G T Y + P D P V + G ++ S R A Sbjct: 1436 KHPTTFLHNKLTNEYGCT-NYCLKAGELPTIDGAPAGVLAAVIVHGNVISEARSSSSRYA 1494 Query: 212 EQVAAAEVL 220 + A+ + L Sbjct: 1495 KVKASEKAL 1503 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 47/148 (31%), Gaps = 34/148 (22%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +A T H ++YERLEFLGD L + S L+ Sbjct: 1058 PDFALEAFTKDSDNTEEHRGQQIHFQRGMGKNYERLEFLGDCFLKMATSIALYTQNPDDD 1117 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR---------------------VSSDLRKD 106 E + V L+ + A + + +IR S L + Sbjct: 1118 EFDYHVNRMCLICNKNLFNTAIKKQIYRYIRSRGFSRHIWYPDGLTLLHGKDHSKKLLSE 1177 Query: 107 VCS-FMTSIQADVVESLIAALYLDGGIE 133 ADV E+LI A L GG E Sbjct: 1178 GKHALGEKTIADVCEALIGASLLSGGPE 1205 >gi|255030397|ref|ZP_05302348.1| ribonuclease III [Listeria monocytogenes LO28] Length = 102 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 4/100 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L++ +G+ F N LL++A THSS + ++ + ERLEFLGD +L L +S LF Sbjct: 3 QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 N + EG ++ ++V + + A + + ++R+ Sbjct: 63 NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG 102 >gi|297794785|ref|XP_002865277.1| hypothetical protein ARALYDRAFT_917014 [Arabidopsis lyrata subsp. lyrata] gi|297311112|gb|EFH41536.1| hypothetical protein ARALYDRAFT_917014 [Arabidopsis lyrata subsp. lyrata] Length = 786 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 101/277 (36%), Gaps = 70/277 (25%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ T+EK + Y+F N++LL++A+T ++RLEFLGD +L + ++ + Sbjct: 1 MDSM--ETVEKILNYSFKNKTLLKEAIT-------LSPRFKRLEFLGDSVLEVALANYIH 51 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111 + + + K EL + V+ E ++ + +L FI + S Sbjct: 52 HAYPNLKLQELCDLRTANVNNEKFARATVKHNLYQFII---GEKSSSPSEKIKEFSEAVS 108 Query: 112 --------------TSIQADVVESLIAALYLDGGIEVAGTF----VDKYWKQRALKSGKF 153 + D+VES+ A+Y+D +V + V ++ Sbjct: 109 KEDVPVPYGGLVEAPKVLGDIVESIAGAVYIDVDFDVQRFWEVCCVCLFFITFVFLISML 168 Query: 154 RRDAKTELQEWAHA-KFGVTPEYKVTF--------------------------RSGPDHD 186 K E E+ + + P Y + S DH Sbjct: 169 LI--KRE--EFLQIFRGLLEPIYTLDDLQMQPKPPFLTLFRLADKHGKRIDFRYSKDDHS 224 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + G+ A G S A+ +AA E +++ Sbjct: 225 KENIAEVYLDGIFIASGCTKSLSVAKVLAAEEAVQKL 261 Score = 98.6 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 95/258 (36%), Gaps = 58/258 (22%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + +EK + Y F N++LL++AL +S +++L F+G L L I+ ++ Sbjct: 467 MDSDSVKAVEKILNYVFTNKNLLKEALRQTS------SLFQKLRFVGRAALVLAITNHIY 520 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDLR- 104 + + + EL + +T ++VA + ++ F V + Sbjct: 521 LRYPNFEPRELELLQRGNTCNKTLARVAVKHNIHQFFIGQFKSEKKIEAFSKVVGKEDDP 580 Query: 105 --KDVCSFMT-SIQADVVESLIAALYLDGGIEVAGTF---------------VDKYWKQR 146 D S T ++ +D+VES+ A+Y+D ++ + + + Sbjct: 581 VPSDGRSERTTNVLSDLVESVAGAVYIDMNFDIKRLWESFRGLFEPLYTLDDLRLRPQPI 640 Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 S +D K Y+ G R+ V + A G Sbjct: 641 HTLSCLGDKDGK-----------HFDFRYE---EKG---SNRYKAHVYLDDKLIASGKKK 683 Query: 207 SKR-AAEQVAAAEVLKRE 223 + R A+ AA E +++ Sbjct: 684 NSRDDAKMSAAMEAVRKL 701 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 6/73 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE-----ISGLAPAQGMDC-SKRA 210 K +L + P Y++ GP ++ +F V+ I G +G K+ Sbjct: 365 PKGKLHKICVKNKWPFPIYRIEEERGPKNEQKFVCSVKIEIPNIEGSFHMKGDAKPKKKE 424 Query: 211 AEQVAAAEVLKRE 223 AE +A +++ Sbjct: 425 AENSSAYHMIRAL 437 >gi|294463153|gb|ADE77113.1| unknown [Picea sitchensis] Length = 173 Score = 120 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 75/144 (52%), Gaps = 20/144 (13%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S LE + Y F ++SLL++A+THSS ++ ESYE+LEF+GD +LG L++ L+ + Sbjct: 18 SLSELEDILKYKFKSKSLLKEAITHSS--NNNTESYEKLEFVGDSVLGYLVTKHLYCAYP 75 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS------------SDLRKDVCSFM- 111 +G L++ + V E ++V + ++ ++ D+ + SF Sbjct: 76 KLYQGTLTLLRSRNVDTEKFARVCVKHKFHQYLLLNAPALQQIIEDFVKDIEDESKSFRC 135 Query: 112 -----TSIQADVVESLIAALYLDG 130 + AD+VES+ A+++D Sbjct: 136 GDFKPPKVLADIVESIAGAVFVDC 159 >gi|2244899|emb|CAB10321.1| UFD1 like protein [Arabidopsis thaliana] gi|7268289|emb|CAB78584.1| UFD1 like protein [Arabidopsis thaliana] Length = 778 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 75/195 (38%), Gaps = 23/195 (11%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +LEK + Y F ++SLL KA T +S ESYE LE LGD IL + I + Sbjct: 52 MEIESLEKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFIKLY 111 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----------------DLRKD 106 G L+ V E ++VA L S++R L + Sbjct: 112 PKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAMEKYPLHSN 171 Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 + + AD+VES I A+++D + + K R AK +L E Sbjct: 172 GLLKVPKVLADIVESTIGAIFMDCNSTETVWKISNHQ-----KMDFELRSAKEKL-EREQ 225 Query: 167 AKFGVTPEYKVTFRS 181 + + K+ Sbjct: 226 RERKQRAKLKLEREK 240 >gi|213408108|ref|XP_002174825.1| dicer [Schizosaccharomyces japonicus yFS275] gi|212002872|gb|EEB08532.1| dicer [Schizosaccharomyces japonicus yFS275] Length = 1384 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 51/270 (18%), Positives = 103/270 (38%), Gaps = 55/270 (20%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 S LE +GY F + LL+ A TH+S + Q +Y++LEFLGD +L ++ LF + Sbjct: 1105 SGLESLVGYTFKHPGLLKIAFTHASYVKTTQTAVNYQQLEFLGDAVLDFIVVRYLFKKYQ 1164 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFM------------ 111 + EL+ + V ++ + V+ +L L F ++ + D+R + Sbjct: 1165 NKTAAELTDTKSFYVCNKSLAYVSFKLGLYDFMLQDNEDIRNAYKEYKSVIDKLQQDTKI 1224 Query: 112 -----------------TSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQRALKSGK 152 +D+ ES + A+YLD G + F+ ++ G Sbjct: 1225 DSNHPTPSEKFWLLIEPPKFLSDIFESFVCAVYLDSGFQFSALEPFLKFLVEELGDYEGV 1284 Query: 153 FRRDAK-TELQEWAHAKFGVTPEYK-----VTFRSGPD--------HDPRFTVVVEISGL 198 F +++ + + +YK + D H + + I Sbjct: 1285 FNEPPVFSQINQHLQKQGCK--QYKFQCVIIDEEEKSDLLYTKAVTH--HYEYSLIIHDE 1340 Query: 199 APAQGMDCSKRAAEQ---VAAAEVLKREGI 225 +K+ +++ +A E+ ++ + Sbjct: 1341 IVCSAKALNKKNSQKLLSLALKELYQKASV 1370 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 25/146 (17%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ +I + +SLL +A T S Y+R EF GD L L S +F + Sbjct: 925 RLQAKI----STKSLL-EAST--SPGSVLPFDYDRYEFYGDTFLKLAASNSVFLSYLWVP 977 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR------------------VSSDLRKDVCS 109 E +L + ++ T ++++ DL F+ S + + Sbjct: 978 ECKLHIERKRIIRNSTLFTISKKHDLPGFLLSEPFVIKTFIPFGYQPTQKSKNKMERSQL 1037 Query: 110 FMTSIQADVVESLIAALYLDGGIEVA 135 AD+VES + A D G++ A Sbjct: 1038 LANKTVADIVESSLGACLYDSGVDEA 1063 >gi|195335297|ref|XP_002034311.1| GM19969 [Drosophila sechellia] gi|194126281|gb|EDW48324.1| GM19969 [Drosophila sechellia] Length = 1731 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 65/293 (22%), Positives = 104/293 (35%), Gaps = 78/293 (26%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1443 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1502 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-----RVSSDLRK------DVCSFM 111 G L+ ++LV+ T + + L FI ++S + K + Sbjct: 1503 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRV 1562 Query: 112 TS---IQADVVESLIAALYLDGGIEV--AGTFVDKYWKQRALKSGKFRRD-----AKT-- 159 T+ I + + L L LD +E+ A + + +Q G+F KT Sbjct: 1563 TNYVHILLEEADVLPTPLDLDDELELPHANECISQEAEQGVPPKGEFNMSTNVDVPKTLG 1622 Query: 160 ------------------------------ELQEWAHAKFGVTPEYKVTFRSGPDHDP-- 187 ELQE+ + P ++ H Sbjct: 1623 DVLEALIAAIYLDCRDLRRTWDVIFRLFEPELQEFT-RNVPINPIRQLIEHK---HAKPV 1678 Query: 188 ---------------RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +FT + G +K A+ AA L+R I Sbjct: 1679 FSSPIMDGDTLMVGCQFTC---MEKSIKVYGFGSNKNQAKLSAAKHALQRLSI 1728 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L + + EG L+ + LVS Sbjct: 1209 AITASSATDVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLL 1266 Query: 86 QVARELDLASFI 97 + D+ + Sbjct: 1267 YCLADTDIPKKL 1278 >gi|238503379|ref|XP_002382923.1| nucleolar RNAse III, putative [Aspergillus flavus NRRL3357] gi|83771529|dbj|BAE61661.1| unnamed protein product [Aspergillus oryzae] gi|220691733|gb|EED48081.1| nucleolar RNAse III, putative [Aspergillus flavus NRRL3357] Length = 234 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 87/219 (39%), Gaps = 25/219 (11%) Query: 23 LEKA-LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LE+A TH +S+ +++Y+RLE LGD + L+ + L++ F G +S LV Sbjct: 5 LERAVFTHPGVSNDTEKTYDRLEILGDAYIELIATKLIWKRFREIPSGRISQIRELLVKN 64 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTF 138 ET ++ A L V D + + T +AD+ E+ +AA + G V + Sbjct: 65 ETLAEYAAGYGLDRKAAVPQDYLRQSKRW-TKTRADIFEAYVAAAIISHPVDGYRVVENW 123 Query: 139 VDKYWKQRALKSG--KFRRDAKTELQEWAHAK---FGVTPEYKVTFRSGPDHD----PRF 189 + + W + + G K +AK E K G+ Y P F Sbjct: 124 LTQLWLPKLSELGIQKPVLNAK----ELLARKIMGKGIKLRY--IDEHPPAQQGPGMQTF 177 Query: 190 TVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V V + + G +K A AA + L E Sbjct: 178 FVGVYLTGWGWNNKHLGSGQGPNKTIAGNEAAHQALSNE 216 >gi|297815500|ref|XP_002875633.1| hypothetical protein ARALYDRAFT_484824 [Arabidopsis lyrata subsp. lyrata] gi|297321471|gb|EFH51892.1| hypothetical protein ARALYDRAFT_484824 [Arabidopsis lyrata subsp. lyrata] Length = 1521 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 22/181 (12%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE++I + F+ + LL++A+THSS+ SY SYERLEFLGD +L LI+ LFN ++ Sbjct: 1138 ELTELERKIQHEFSAKFLLKEAITHSSVHESY--SYERLEFLGDSVLDFLITRHLFNTYE 1195 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDV-------------CSF 110 GE++ ++ V+ E +QVA + +L + R ++ L + Sbjct: 1196 QTGPGEMTDLRSACVNNENFAQVAVKNNLHIHLQRCATVLENQINEYLMSFQKPDETGRS 1255 Query: 111 MTSI-----QADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEW 164 + SI DVVES+ AL +D +++ + V + + K + EL E Sbjct: 1256 IPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNEL 1315 Query: 165 A 165 Sbjct: 1316 C 1316 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 33/65 (50%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S ERLE LGD +L + S LF + EG+LS + S++S ++A L +IR Sbjct: 961 SMERLELLGDSVLKYVASCYLFLKYPDKDEGQLSRQRQSIISNSNLHRLATNRKLQGYIR 1020 Query: 99 VSSDL 103 + Sbjct: 1021 NGAFE 1025 >gi|158706455|sp|Q2H0G2|DCL1_CHAGB RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease DCL1; Includes: RecName: Full=ATP-dependent helicase DCL1 Length = 1607 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 56/281 (19%), Positives = 97/281 (34%), Gaps = 67/281 (23%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E R+GYAF + LL A H + + SY+RLEFLGD +L + LF+ F Sbjct: 1273 ARFEARMGYAFTHPRLLRSAFQHPTYPSVYEKLPSYQRLEFLGDALLDMASVEFLFHRFP 1332 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDV---------------- 107 A L+ ++VS + +A L I +S ++K++ Sbjct: 1333 GADPQWLTEHKMAMVSNQFLGCLAVYLGFHRAISYCASAIQKEITEYVTEIEDALQSARD 1392 Query: 108 -------------------------------CSFMTSIQADVVESLIAALYLDGGIEVAG 136 CS DVVE+ + A+++D + A Sbjct: 1393 DASKTPCNRHATTPSPGDLPAESFARDFWVRCSRPPKCLPDVVEAYVGAVFVDSRYDFAR 1452 Query: 137 ------TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD------ 184 V +++ L + T L + E+++ + P Sbjct: 1453 VRAFFADHVRPFFEDMRLYDAFANKHPVTFLAGIMQGRMRCA-EWRLLVKDLPPVVGAGA 1511 Query: 185 ----HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P+ V + GL A + S R + AA + ++ Sbjct: 1512 GTELETPQVVCAVRVHGLTLAHAVAASGRYGKIAAAKKAIQ 1552 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 47/139 (33%), Gaps = 30/139 (21%) Query: 20 RSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +A T H S +YERLEFLGD L + + +F Sbjct: 1078 PDLALEAFTKDSDNSGEHDAEQISFQSGMGNNYERLEFLGDCFLKMATTISIFTLIPDKA 1137 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDLRKDVCSFM- 111 E E V L+ A E+ L IR + RKD+ Sbjct: 1138 EFEYHVERMLLICNRNLFNNALEVKLEEHIRSMAFDRRSWYPEGLTLKKGKRKDLTRQHV 1197 Query: 112 --TSIQADVVESLIAALYL 128 ADV E+LI A YL Sbjct: 1198 LADKTIADVCEALIGAAYL 1216 >gi|241858001|ref|XP_002416132.1| ribonuclease III, putative [Ixodes scapularis] gi|215510346|gb|EEC19799.1| ribonuclease III, putative [Ixodes scapularis] Length = 778 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 10/166 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E+ G F + LL KA TH S ++ S +RLEFLGD +L L+ S L+ + Sbjct: 573 KLHEFEELTGIEFTHIRLLAKAFTHRSIGFNNLTLGSNQRLEFLGDTVLQLVASEYLYKY 632 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + F T +AD++E Sbjct: 633 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMVEFTIY----PYPKGELKTKDRADILEGE 688 Query: 123 IAALYLDGGI---EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA 165 L L G + ++ Y + D K++LQ+ Sbjct: 689 DTPLSLGQGWMGTSHSCPYIL-YISSLDFILNQDWNDPKSKLQQCC 733 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 60/153 (39%), Gaps = 28/153 (18%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T SSISH ERLEFLGD ++ L S LF F +EG L+ ++V + + + Sbjct: 414 TASSISH-----NERLEFLGDAVVEFLSSIHLFFMFPDLEEGGLATYRAAIVQNQHLAVL 468 Query: 88 AR------------ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI--AALYLDGGIE 133 A+ EL ++ I S R +F + + + AL+LD GI Sbjct: 469 AKVILHSKVFTHVEELPISPHISFSLPARH---AFAIGMLEETSWLFVSLGALFLDSGIR 525 Query: 134 VAGTFVDKYWKQRALKSG---KFRRDAKTELQE 163 VA G + LQE Sbjct: 526 VADQVFSTTLFSEPDLLGVWVNYPLHP---LQE 555 >gi|63054443|ref|NP_588215.2| dicer [Schizosaccharomyces pombe 972h-] gi|1351642|sp|Q09884|DCR1_SCHPO RecName: Full=Protein Dicer; AltName: Full=Cell cycle control protein dcr1; AltName: Full=RNA interference pathway protein dcr1; Includes: RecName: Full=Endoribonuclease dcr1; Includes: RecName: Full=ATP-dependent helicase dcr1 gi|157310516|emb|CAB41233.2| dicer [Schizosaccharomyces pombe] Length = 1374 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 26/163 (15%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 S +E+ IGY+F N+ LL A H S+ E+Y++LEFLGD +L +I L+ + Sbjct: 1084 SYIEETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYP 1143 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS--------------- 109 +A GEL+ + V ++ S + L+L +I+ S D Sbjct: 1144 NATSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRETASE 1203 Query: 110 --------FMTSIQADVVESLIAALYLDGGIEV-AGTFVDKYW 143 +D +E++I A++LD G + + FV + Sbjct: 1204 NPWFWFEIDSPKFISDTLEAMICAIFLDSGFSLQSLQFVLPLF 1246 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 20/136 (14%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALT S Y+RLEF GD L L S +F F +E +L ++S Sbjct: 916 QALT--SAESQLNFDYDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNL 973 Query: 85 SQVARELDLASFIRVSSDLRK------------DVCSF------MTSIQADVVESLIAAL 126 +VA + +L + + + D C + AD+VE+ I A Sbjct: 974 YKVAIDCELPKYALSTPLEIRHWCPYGFQKSTSDKCRYAVLQKLSVKRIADMVEASIGAC 1033 Query: 127 YLDGGIEVAGTFVDKY 142 LD G++ A Sbjct: 1034 LLDSGLDSALKICKSL 1049 >gi|322702026|gb|EFY93774.1| Dicer-like protein 1 [Metarhizium acridum CQMa 102] Length = 1524 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 69/194 (35%), Gaps = 36/194 (18%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E IGY F + LL A H S + + +Y+RLEFLGD +L + I LF + A Sbjct: 1247 KVEGSIGYKFRSPKLLRSAFKHPSYPYEPELPNYQRLEFLGDALLDVAIVDFLFRRYPLA 1306 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV------------------- 107 L+ ++ S S + EL L I +S+ Sbjct: 1307 DPQWLTEHKMAMASNHFFSFLCVELGLHRHI-LSTGSSMMGHIAGFVEQIEKAKLQTEDG 1365 Query: 108 ---------CSFMTSIQADVVESLIAALYLDGGIEVA------GTFVDKYWKQRALKSGK 152 +D++E+++ A+Y D + F+ +++ L Sbjct: 1366 VLQLDFWLNTEHPPKALSDILEAVVGAMYEDSKYDYNSVRDFFTKFIAPHFQDMTLYDTY 1425 Query: 153 FRRDAKTELQEWAH 166 T+L + Sbjct: 1426 AAGHPVTQLTKLMQ 1439 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 60/162 (37%), Gaps = 27/162 (16%) Query: 20 RSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 L +ALT S + ++YERLEFLGD L + + LF + E E V Sbjct: 1065 PPLALEALT-KSEEDVDVQSNKNYERLEFLGDAFLKMATTISLFTLIPNKNEFEYHVERM 1123 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVC-------------------SFMTSIQAD 117 L+ + A + L ++R S + AD Sbjct: 1124 ILICNKNLFNHAVDRGLQEYVR-SRGFDRRSWYPDLVLRKGKKHKPVALTHRLADKSIAD 1182 Query: 118 VVESLIAALYLD--GGIEVAGTFVDKYWKQRALKSGKFRRDA 157 V E+LI A Y+ G+ +A V K + R + K+ D Sbjct: 1183 VCEALIGAAYMTEPEGMNLAVKAVTKMVQSRNHRMTKYS-DY 1223 >gi|291000766|ref|XP_002682950.1| hypothetical protein NAEGRDRAFT_62031 [Naegleria gruberi] gi|284096578|gb|EFC50206.1| hypothetical protein NAEGRDRAFT_62031 [Naegleria gruberi] Length = 1386 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 104/268 (38%), Gaps = 53/268 (19%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + L +++ + F N LL +A H S + + +YERLEFLGD +LGL++++ +F Sbjct: 1103 KIDLYKLTEKLNFQFENSGLLLEAFIHPSYNGVF--NYERLEFLGDSVLGLIVTSKIFEK 1160 Query: 63 FDS---AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMT-----S 113 F G +S +V + + + E L ++I + + + V Sbjct: 1161 FHKNSSFSLGMMSKLREKIVMNKNFANLCIENQLQNYIIFSGNHIAQQVVHSKDDGEYVK 1220 Query: 114 IQADVVESLIAALYLDGGIE------VAGTFVDKYWKQRALKSGKFR------------- 154 + +DV ESL AL++D + + F+ K + + Sbjct: 1221 MLSDVFESLAGALFVDSHYDLDTVKLIYDEFLWKNFMDEIFTEAENEVSMNSNVTEIVGN 1280 Query: 155 --------------RDAKTELQEWAHA----KFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 RD+ + L E + + ++ + P +P F +V + S Sbjct: 1281 PNNPIVTFISTNITRDSSSVLNELLQQFVFNRLDKSEKWYMEESKKP--NPPFNMVADFS 1338 Query: 197 G---LAPAQGMDCSKRAAEQVAAAEVLK 221 G S + A++ A+AE L+ Sbjct: 1339 ITIFEKTFTGRGPSIKLAKKQASAECLQ 1366 Score = 79.7 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 21/138 (15%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LLE+ALT +YE+LEF GD IL ++S +++ F G LS + VS Sbjct: 934 ELLEEALTAK--RSQVGANYEKLEFFGDSILKYIVSKHIYHEFPLYSSGSLSQLQHKFVS 991 Query: 81 AETCSQVARELDLASFIRV----SSDLRKDVCSFMT-------------SIQADVVESLI 123 + VAR L FI +S L +++ F + + ADVVES+I Sbjct: 992 NYFLASVARNTRLPLFIITEPLNTSQLVQNIGGFKSNKFADETNIEAEYKVLADVVESII 1051 Query: 124 AALYLD--GGIEVAGTFV 139 Y G +E F+ Sbjct: 1052 GFCYHIFGGSLEQINRFL 1069 >gi|302896162|ref|XP_003046961.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI 77-13-4] gi|256727889|gb|EEU41248.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI 77-13-4] Length = 1452 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 97/259 (37%), Gaps = 55/259 (21%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +GY F +LL A H S + +Y+RLEFLGD +L + I LF F A L+ Sbjct: 1161 VGYRFKWPALLRSAFKHPSWPYDPVPNYQRLEFLGDALLDMAIVDNLFQRFPQADPQWLT 1220 Query: 73 VRFNSLVSAETCSQVARELDLASFI------RVS-------------SDLRKDVCSFMTS 113 ++ S + + +LDL + + D R++ + T+ Sbjct: 1221 EHKMAMASNQFLGCLCVKLDLHKHLTSTTSSLIGQISSYASELELAEEDARQEAKANKTA 1280 Query: 114 IQ--------------ADVVESLIAALYLDGGIEVA------GTFVDKYWKQRALKSGKF 153 ++ ADV+E+L+ A+++D + F++ Y++ AL Sbjct: 1281 MRKDFWLRASAPPKAFADVMEALVGAMFVDAKYDYTVVRNFFTRFIEPYFEDMALYDSFA 1340 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGP-----------DHDPRFTVVVE-ISGLAPA 201 + T L + G T ++V+ + P + D V V + A Sbjct: 1341 NKHPVTYLSKKMQQDLGCT-NWRVSAENVPCGVEEGIAALTESD---VVAVFMVHQKVVA 1396 Query: 202 QGMDCSKRAAEQVAAAEVL 220 S R A+ A L Sbjct: 1397 NATAKSGRYAKIAVAKRAL 1415 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 53/147 (36%), Gaps = 21/147 (14%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 + +YERLEFLGD L + + LF + E V L+ + A + Sbjct: 987 NFQPGMGSNYERLEFLGDSFLKMATTISLFTLIPESDECGYHVERMILICNQNLFNHAVD 1046 Query: 91 LDLASFIR--------------VSSDLR-KDVCSFM--TSIQADVVESLIAALYLD---G 130 L +IR + K ADV E+LI A YL G Sbjct: 1047 RKLHEYIRSKAFDRRSWYPDLPLKKGKAPKTEMRHNLADKSIADVCEALIGAAYLSGKGG 1106 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDA 157 +++A V + K + K KF D Sbjct: 1107 SMDLAVKAVTRMVKSKNHKMEKFE-DY 1132 >gi|289620343|emb|CBI53201.1| unnamed protein product [Sordaria macrospora] Length = 345 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 92/240 (38%), Gaps = 41/240 (17%) Query: 19 NRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 + +L + ALTH +++ SYERLE++GD L L+ S+ ++ F + G+ + R Sbjct: 68 DPALKKAALTHPGKANNDPVASYERLEWIGDAYLELIASSFIYQTFPTLPAGKSAQRREM 127 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCS---------FMTSIQADVVESLIAALYL 128 L+ T + + L + + + I D+ E+ + + L Sbjct: 128 LIRNTTLGEFSVYYGLDNMADI-PEEFNMEGRVGGTNASQKVRVKILGDLFEAYVGGVIL 186 Query: 129 ---DGGIEVAGTFVDKYWKQ---RALKSGKFR------RDAKTELQEWAHAKFGVTPEYK 176 GI+ ++ W ++ + + D KT L E A GV EYK Sbjct: 187 SDPANGIQRVSDWLKALWGPLMAEYIREEEKKSKSGQAHDPKTIL-EAAIGARGVKIEYK 245 Query: 177 VTFRSGPDHD--------PRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKRE 223 P + P F + ++G L G SK+ A Q AA L+ + Sbjct: 246 DL----PSKNLKDRGTKLPLFAIGCFMTGWGETNLQLGFGSALSKKEAGQKAAQMALENK 301 >gi|52548547|gb|AAU82396.1| ribonuclease III [uncultured archaeon GZfos17C7] Length = 248 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 59/244 (24%), Positives = 99/244 (40%), Gaps = 37/244 (15%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFN--HF 63 LEK IG+ F N +LLE+A+T S S+ + + Y+RLEFLGDR+L L+++ LF Sbjct: 2 ELEKLIGHKFKNIALLEEAITTGSYSNEHPDSSDYQRLEFLGDRVLSLILAEELFKLSKS 61 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S EG+++ L + ++ + L ++IR + + ADV E++ Sbjct: 62 ASLDEGKMTFLKAELENNLRLAEYGENMGLRNYIRANEKRED----IRPKVIADVFEAIC 117 Query: 124 AALYLD----GGIEVAGTFVDKYWKQRALKSG--------KFRRDAKTELQEWAHAKFGV 171 A+Y D I+ F+ K+ +K R + + +E + Sbjct: 118 GAVYQDTKESSRIKEVKKFLLKFDILERIKDEMSSGRGFLPIRNQFENKFREIHRCNPEI 177 Query: 172 TPEYKVTFRSGPDHDPRFTVV-VEISGLAPAQGM----------DC---SKRAAEQVAAA 217 Y SG H ++ + I + G SK+ AE A Sbjct: 178 NFVYT---SSGEGHQTKWKIEKCSIKDILSQTGEYVELKGIKNSGKWFSSKKDAETDAFE 234 Query: 218 EVLK 221 + K Sbjct: 235 QAYK 238 >gi|328947077|ref|YP_004364414.1| ribonuclease III [Treponema succinifaciens DSM 2489] gi|328447401|gb|AEB13117.1| ribonuclease III [Treponema succinifaciens DSM 2489] Length = 369 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 16/188 (8%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58 M+ ++ I Y F N LLE+A T S S + E + E LEF GD IL ++ + Sbjct: 1 MNRQDIGFVQSSINYQFKNLQLLEQAFTRKSYSEEHPELQNNEVLEFYGDEILDFFVTKM 60 Query: 59 LFNHFD---------SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 ++ F EGEL+ + LVS E+ ++ + + F+ + K+ Sbjct: 61 MYKRFSRILNNELVSEKNEGELTKLKSILVSKESLARCMYNIGFSKFLYLGKSDEKNEVY 120 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 S+ D+ E++I A+ D V + +G K E +H Sbjct: 121 KSKSVNEDLFEAIIGAVAADCDWNYEKLEKVCRTMLDMETTNGYLALLVK----EKSHRL 176 Query: 169 FGVTPEYK 176 P Y+ Sbjct: 177 GFGEPCYR 184 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 3/84 (3%) Query: 141 KYWKQRALKSGKFRRDAK---TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + Q +K D + L E K + Y+ + +P + + G Sbjct: 254 HFLIQEEIKQQFQNLDYTNPASTLHELFQKKVIMEVRYEFNEYHDENGNPIWNCKAILEG 313 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221 + + SK+ +Q A+ ++LK Sbjct: 314 YGTFEADNASKKQVKQDASLKLLK 337 >gi|221125080|ref|XP_002155102.1| PREDICTED: similar to dicer 1 [Hydra magnipapillata] Length = 798 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 33/167 (19%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 E I Y F+N+S L +A TH S S+S Y++ EFLGD IL LI+ + ++ Sbjct: 600 NLHKFEDLISYKFSNKSHLIQAFTHLSYLSNSVTGCYQQYEFLGDAILDFLITLHIQSNT 659 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL-------------------- 103 + G+L+ +++V+ T +A + +I SS+ Sbjct: 660 QNLSPGQLTYFRSAVVNNNTFGLLAIKHSFYKYIYSSSNELFSSYNSFIEIVKDDQGLKD 719 Query: 104 ------------RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 + + D+ ES+ A++LD G+++ + Sbjct: 720 EYFESPFVICPTESEEGYQAPKVLGDLFESVAGAIFLDSGLDLVTVW 766 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 68/183 (37%), Gaps = 36/183 (19%) Query: 2 SALRYSTLEKRIGYAFAN---RSLLE--KALTHSSISHSYQESYERLEFLGDRILGLLIS 56 S L L + Y N S+L+ +ALT + + ERLE LGD L +S Sbjct: 381 SVLDLENLLQLKNYVTENVKSPSVLKIFEALTTRQANMPF--DLERLEILGDSFLKQAVS 438 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM----- 111 +F S EG+L++R + +S E +V + + + + I S K S Sbjct: 439 IFVFFQNPSFHEGKLTIRRKNCISNENLCKVGKSVGIQNIICNSQFGIKSSNSENRNPWT 498 Query: 112 ------------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147 AD VE+LI + GG+ +A F+ + Sbjct: 499 VWLPPGYLRAELDDIKRYTYQNVQPKSIADCVEALIGVYFEVGGVNLALCFMQHFLNIPV 558 Query: 148 LKS 150 L S Sbjct: 559 LHS 561 >gi|80979089|gb|ABB54747.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1519 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L + + EG L+ + LVS Sbjct: 1190 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1247 Query: 86 QVARELDLASFI 97 + D+ + Sbjct: 1248 FCLIDADIPKTL 1259 >gi|80979099|gb|ABB54752.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1519 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L + + EG L+ + LVS Sbjct: 1190 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1247 Query: 86 QVARELDLASFI 97 + D+ + Sbjct: 1248 FCLIDADIPKTL 1259 >gi|80979085|gb|ABB54745.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1519 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L + + EG L+ + LVS Sbjct: 1190 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1247 Query: 86 QVARELDLASFI 97 + D+ + Sbjct: 1248 FCLIDADIPKTL 1259 >gi|80979097|gb|ABB54751.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1519 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L + + EG L+ + LVS Sbjct: 1190 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1247 Query: 86 QVARELDLASFI 97 + D+ + Sbjct: 1248 FCLIDADIPKTL 1259 >gi|80979091|gb|ABB54748.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1519 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L + + EG L+ + LVS Sbjct: 1190 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1247 Query: 86 QVARELDLASFI 97 + D+ + Sbjct: 1248 FCLIDADIPKTL 1259 >gi|80979093|gb|ABB54749.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1519 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L + + EG L+ + LVS Sbjct: 1190 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1247 Query: 86 QVARELDLASFI 97 + D+ + Sbjct: 1248 FCLIDADIPKTL 1259 >gi|119498655|ref|XP_001266085.1| RNase3 domain protein [Neosartorya fischeri NRRL 181] gi|119414249|gb|EAW24188.1| RNase3 domain protein [Neosartorya fischeri NRRL 181] Length = 373 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 27/246 (10%) Query: 2 SALRYSTLEKRIGYAFANRSL-------LEKA-LTHSSISHSYQESYERLEFLGDRILGL 53 +++ ++ ++ G +F+ L LE A TH +S + +Y+RLE LGD + L Sbjct: 117 NSVEFARTQEN-GNSFSLPELPPILDSSLELAVFTHPGLSKDSKSTYDRLEILGDAYIEL 175 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 + + +++ F+ G++S LV ET S+ A L V DL T Sbjct: 176 IATRFIWSRFEDISSGQISQIRELLVKNETLSEFATLYGLDGRASVPQDLLNQ-PRRWTK 234 Query: 114 IQADVVESLIAALYLDG---GIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAK 168 + D+ ES +AA+ L G VA ++ + W R + + DAK L + K Sbjct: 235 TKGDIFESYVAAIILSRPTDGYHVAERWLTQLWLPRLTDTVIPRTALDAKETLAKRIMGK 294 Query: 169 FGVTPEYKVTFRSGP----DHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEV 219 GV +Y P F V V ++G G SK A AA + Sbjct: 295 -GVKLKY--VDERSPVQSRGGMQTFYVGVYLTGWGWQNKHLGSGHGPSKAVAGDAAARQA 351 Query: 220 LKREGI 225 L E + Sbjct: 352 LLNEPL 357 >gi|15229816|ref|NP_189978.1| ribonuclease III family protein [Arabidopsis thaliana] gi|7594553|emb|CAB88120.1| putative protein [Arabidopsis thaliana] gi|94450858|gb|ABF19799.1| dicer-like 3 [Arabidopsis thaliana] gi|332644321|gb|AEE77842.1| protein dicer-like 3 [Arabidopsis thaliana] Length = 1531 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 22/178 (12%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE++I + F+ + LL++A+THSS+ SY SYERLEFLGD +L LI+ LFN ++ Sbjct: 1151 ELERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFNTYEQTG 1208 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFI--------------RVSSDLRKDVCSFMTS 113 GE++ ++ V+ E +QVA + +L + + +S + + S Sbjct: 1209 PGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPS 1268 Query: 114 I-----QADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWA 165 I DVVES+ AL +D +++ + V + + K + EL E Sbjct: 1269 IQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELC 1326 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S ERLE LGD +L + S LF + EG+LS + S++S ++ L +IR Sbjct: 971 SMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIR 1030 Query: 99 VSSDL 103 + Sbjct: 1031 NGAFE 1035 >gi|159126180|gb|EDP51296.1| nucleolar RNAse III, putative [Aspergillus fumigatus A1163] Length = 373 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 88/221 (39%), Gaps = 25/221 (11%) Query: 23 LEKA-LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LE A TH +S + +Y+RLE LGD + L+ + ++ ++ G++S LV Sbjct: 144 LELAVFTHPGLSKDSKLTYDRLEILGDAYIELIATRFIWGRYEGFSSGQISQIRELLVKN 203 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTF 138 ET S+ A L + V DL T + D+ ES +AA+ L G VA + Sbjct: 204 ETLSEFATLYGLDNRASVPRDLLSQ-PRRWTKTKGDIFESYVAAVILSRPSDGYHVAERW 262 Query: 139 VDKYWKQRALKS--GKFRRDAKTELQEWAHAK---FGVTPEYKVTFRSGPDHDP----RF 189 + + W R + + DAK E + GV +Y P F Sbjct: 263 LTRLWLPRLTDAVIPRTALDAK----ETLAKRIMGKGVKLKY--VDERSPAQSRGGMQTF 316 Query: 190 TVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 V V ++G G SK A AA + L E + Sbjct: 317 YVGVYLTGWGWQNKHLGSGHGPSKAVAGDAAARQALLNEPL 357 >gi|307108113|gb|EFN56354.1| hypothetical protein CHLNCDRAFT_144841 [Chlorella variabilis] Length = 229 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 11/162 (6%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S R L++R+GY F+N LL AL HSS + + + ++GD + L+++ + Sbjct: 61 SKERIHELQERLGYRFSNLYLLRLALIHSSAAPTT--HNSIMAWIGDAAMYLVVAEEVAA 118 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR-KDVCSFMTSIQADVVE 120 A G+LS +L+ C + A L L+ ++ + +R ++ +++ A++ E Sbjct: 119 ALGYAPIGQLSEVRKTLIGRAMCEKYAAHLGLSEYLVLGKSVRIQNAGVASSNMLAELFE 178 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 +++ A+YLDG ++ + D + LQ Sbjct: 179 AVMGAVYLDGDLDAVRRCYISLF--------PLPADPLSLLQ 212 >gi|238479963|ref|NP_001154662.1| ribonuclease III family protein [Arabidopsis thaliana] Length = 1577 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 22/178 (12%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE++I + F+ + LL++A+THSS+ SY SYERLEFLGD +L LI+ LFN ++ Sbjct: 1197 ELERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFNTYEQTG 1254 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFI--------------RVSSDLRKDVCSFMTS 113 GE++ ++ V+ E +QVA + +L + + +S + + S Sbjct: 1255 PGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPS 1314 Query: 114 I-----QADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWA 165 I DVVES+ AL +D +++ + V + + K + EL E Sbjct: 1315 IQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELC 1372 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S ERLE LGD +L + S LF + EG+LS + S++S ++ L +IR Sbjct: 1017 SMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIR 1076 Query: 99 VSSDL 103 + Sbjct: 1077 NGAFE 1081 >gi|238479965|ref|NP_001154663.1| ribonuclease III family protein [Arabidopsis thaliana] gi|322518661|sp|Q9LXW7|DCL3_ARATH RecName: Full=Endoribonuclease Dicer homolog 3; AltName: Full=Dicer-like protein 3; Short=AtDCL3 gi|332644322|gb|AEE77843.1| protein dicer-like 3 [Arabidopsis thaliana] Length = 1580 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 22/178 (12%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE++I + F+ + LL++A+THSS+ SY SYERLEFLGD +L LI+ LFN ++ Sbjct: 1200 ELERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFNTYEQTG 1257 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFI--------------RVSSDLRKDVCSFMTS 113 GE++ ++ V+ E +QVA + +L + + +S + + S Sbjct: 1258 PGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPS 1317 Query: 114 I-----QADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWA 165 I DVVES+ AL +D +++ + V + + K + EL E Sbjct: 1318 IQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELC 1375 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S ERLE LGD +L + S LF + EG+LS + S++S ++ L +IR Sbjct: 1020 SMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIR 1079 Query: 99 VSSDL 103 + Sbjct: 1080 NGAFE 1084 >gi|158705946|sp|Q0UL22|DCL2_PHANO RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease DCL2; Includes: RecName: Full=ATP-dependent helicase DCL2 Length = 1399 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 61/276 (22%), Positives = 93/276 (33%), Gaps = 63/276 (22%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNH 62 + LE IGY F + LL +ALTH+S S + SYERLEFLGD +L +IS L H Sbjct: 1092 MGLDVLETLIGYTFKKKPLLLEALTHASFSGPHVHCSYERLEFLGDAVLDYIISKRLHAH 1151 Query: 63 FDSAKEGELSVRFNSLVSAETCS-------------------QVARELDLASFIRVSS-- 101 ++ + V+A + +++ + F+R S Sbjct: 1152 SPELSHQKMHAIRTATVNASFLAFRLFETTIDEETINKTSMRPESQKRAIWQFLRSGSPS 1211 Query: 102 ----------------DLRKDVCSFM-------------TSIQADVVESLIAALYLD--G 130 D + +D+VES+I A+Y+D G Sbjct: 1212 LNANRDNALRQHEQVRDEIIIGLNEAARFPWHLFALTDPPKFLSDMVESVIGAVYIDSLG 1271 Query: 131 GIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF--RSGPD 184 I V + L +G K L A K +Y + Sbjct: 1272 DILTCEAIVRRLGILDCLDHILCNGVDCLHPKERLGHLAVDKG---VQYARVGMNTEPNE 1328 Query: 185 HDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEV 219 D + V++ G + AE VAA + Sbjct: 1329 GDKMYKCQVKVGGEDVGDVAEGLKRLNAETVAAWKA 1364 Score = 81.3 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 19/139 (13%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL +AL S + ++Y+RLEFLGD IL + + L E L+ + +VS Sbjct: 930 LLTRAL--KSSAADGNDNYQRLEFLGDCILKFIATVHLMAANPKWPESHLTAKKGRIVSN 987 Query: 82 ETCSQVARELDLASFI------------RVSSDLRKDVC-----SFMTSIQADVVESLIA 124 ++ L F+ R + DL + + + AD++ESLI Sbjct: 988 GFLARATIAAGLDRFMITKSFTGAKWAPRYAGDLLAETGPAVKEERSSKLIADIIESLIG 1047 Query: 125 ALYLDGGIEVAGTFVDKYW 143 A Y GG E A V Sbjct: 1048 ACYTVGGFEKAVLCVQTLL 1066 >gi|332644323|gb|AEE77844.1| protein dicer-like 3 [Arabidopsis thaliana] Length = 1570 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 22/178 (12%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE++I + F+ + LL++A+THSS+ SY SYERLEFLGD +L LI+ LFN ++ Sbjct: 1190 ELERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFNTYEQTG 1247 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFI--------------RVSSDLRKDVCSFMTS 113 GE++ ++ V+ E +QVA + +L + + +S + + S Sbjct: 1248 PGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPS 1307 Query: 114 I-----QADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWA 165 I DVVES+ AL +D +++ + V + + K + EL E Sbjct: 1308 IQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELC 1365 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S ERLE LGD +L + S LF + EG+LS + S++S ++ L +IR Sbjct: 1010 SMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIR 1069 Query: 99 VSSDL 103 + Sbjct: 1070 NGAFE 1074 >gi|170091728|ref|XP_001877086.1| predicted protein [Laccaria bicolor S238N-H82] gi|164648579|gb|EDR12822.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1358 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 54/259 (20%), Positives = 88/259 (33%), Gaps = 53/259 (20%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + S +E+ IG+ F LL +ALTHSS+ SY RLEF+GD IL ++ +F Sbjct: 1069 LRPESTSAIERIIGHNFQRPHLLAQALTHSSMQGHESASYGRLEFIGDAILDFMVIQHIF 1128 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS------------------- 101 N + G L++ ++VS + V L + S Sbjct: 1129 NRDQTLSPGALTLLKGAMVSNSALAAVCVSSGLRKHLLFESYQLAGSIEVYANELKARQQ 1188 Query: 102 -------DLRKDVCSFM-----TSIQADVVESLIAALYLDGGIEVAGTF-----VDKYWK 144 + + +DVVES+I A+Y+ G V K + Sbjct: 1189 KEYLAAEREGRSPGQYWLGIEPPKALSDVVESIIGAIYISDDFTPIGAERLFNNVLKPFY 1248 Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + L E A+ E S ++ + V + + A Sbjct: 1249 DKHITLQTLSHHPTKILFELFQAQGCHLFE-----ISKENNAEKTLCHVLVHEVILAS-- 1301 Query: 205 DCSKRAAE----QVAAAEV 219 AE +AA + Sbjct: 1302 ------AEDVMPTLAARQA 1314 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Query: 1 MSALRYSTLEKRIGYAFAN----RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56 M + + K + F + LL +L S Y +YERLE LGD L L + Sbjct: 808 MRRIDDLLIVKELNARFFDHAIREDLLHVSLCAPSAGLEY--NYERLELLGDAFLKYLCT 865 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +F + EG L + L+S ++ + + + L +I+ Sbjct: 866 IYVFVAEPTQNEGSLHIARQKLISNKSLLENSNLIGLPVYIQ 907 >gi|52550203|gb|AAU84052.1| ribonuclease III [uncultured archaeon GZfos36D8] Length = 262 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 62/244 (25%), Positives = 106/244 (43%), Gaps = 29/244 (11%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 LE IG+ F N +LLE+A+T S S+ + +Y+ LEFLGDR+L L+++ LF Sbjct: 13 KFELMELEASIGHQFKNIALLEEAITTGSYSNEHPGSSNYQTLEFLGDRVLSLILAEELF 72 Query: 61 N--HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 S EG+++ L + ++ + L ++IR + + ADV Sbjct: 73 KLSKSASLDEGKMTFLKAELENNLRLAEYGENIGLRNYIRANEKRED----IRPKVIADV 128 Query: 119 VESLIAALYLDGG----IEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFG 170 E++ A+YLD I+ F+ K+ ++ + SGK + + + K Sbjct: 129 FEAICGAIYLDTEESIRIKEVKKFLLKFEILERIKKEMSSGKGFLPIRNQFENKFREKHR 188 Query: 171 VTPEYKVTFRS--GPDHDPRFTVV-VEISGLAPAQ-----GMD-----CSKRAAEQVAAA 217 PE K +S G +H R+ + I + + G+ SK+ AE A Sbjct: 189 CNPEIKFEQKSTLGEEHPTRWRIEKCSIKDIQTGEYVELKGVKSDKWFSSKKDAETDAFE 248 Query: 218 EVLK 221 + K Sbjct: 249 QAYK 252 >gi|254584338|ref|XP_002497737.1| ZYRO0F12342p [Zygosaccharomyces rouxii] gi|238940630|emb|CAR28804.1| ZYRO0F12342p [Zygosaccharomyces rouxii] Length = 456 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 87/233 (37%), Gaps = 30/233 (12%) Query: 16 AFANRSLLEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++ + H S S + ERLEFLGD +L +I+ +++N F Sbjct: 185 EIKDPAVRARVFIHKSTIKDKLYLTESEMIKAHNERLEFLGDSVLNTVITMIIYNKFPRY 244 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLI 123 EG+LS +LVS E + L +R + D+ K+ +F + ADV E+ I Sbjct: 245 TEGQLSKLRMTLVSNERLKEWTFMYGLEKKLRTNFDMTKENANFQQGKRKLYADVFEAYI 304 Query: 124 AALYLD---GGIEVAGTFVDKYWKQRALK----------SGKFRRDAKTELQEWAHAKFG 170 L D + ++ K K + + +AK +L Sbjct: 305 GGLIEDDPKHNMPRVRKWLSKLAKPVMDEVTVKDVGLESTEDLDLNAKRQLYSLI-GFAA 363 Query: 171 VTPEYKVTFRSGPDH-DPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221 + Y R P + DP V + G G + + A AA VLK Sbjct: 364 LNLHYVTVKR--PTNTDPNTVVECRVGDGTVLGSGEGRNIKIAGLKAAQNVLK 414 >gi|224613148|dbj|BAH24251.1| dsRNA-specific ribonuclease RNaseIII [Tsuwabuki witches'-broom phytoplasma] Length = 159 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 3/137 (2%) Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 ++ + V ++ A E+ L +I + +K SI AD E+L A+YLD Sbjct: 1 MTKKRAQAVCVDSLLIYAEEIQLKKYIYLGKGEKKRSV-HNYSIVADAFEALFGAIYLDL 59 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 G E A L D KT+LQE + YK+ G H+ F Sbjct: 60 GFEQAQKTFYHVVLP-CLNKIINIIDFKTQLQELVQTR-KQNITYKIISEKGLAHEKEFV 117 Query: 191 VVVEISGLAPAQGMDCS 207 V + +G + Sbjct: 118 SEVYLGKEWLGKGNGKT 134 >gi|70984786|ref|XP_747899.1| nucleolar RNAse III [Aspergillus fumigatus Af293] gi|66845527|gb|EAL85861.1| nucleolar RNAse III, putative [Aspergillus fumigatus Af293] Length = 373 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 88/221 (39%), Gaps = 25/221 (11%) Query: 23 LEKA-LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LE A TH +S + +Y+RLE LGD + L+ + ++ ++ G++S LV Sbjct: 144 LELAVFTHPGLSKDSKLTYDRLEILGDAYIELIATRFIWGRYEGFSSGQISQIRELLVKN 203 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTF 138 ET S+ A L + V DL T + D+ ES +AA+ L G VA + Sbjct: 204 ETLSEFATLYGLDNRASVPRDLLSQ-PRRWTKTKGDIFESYVAAVILSRPSDGYHVAERW 262 Query: 139 VDKYWKQRALKS--GKFRRDAKTELQEWAHAK---FGVTPEYKVTFRSGPDHDP----RF 189 + + W R + + DAK E + GV +Y P F Sbjct: 263 LTQLWLPRLTDAVIPRTALDAK----ETLAKRIMGKGVKLKY--VDERSPAQSRGGMQTF 316 Query: 190 TVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 V V ++G G SK A AA + L E + Sbjct: 317 YVGVYLTGWGWQNKHLGSGHGPSKAVAGDAAARQALLNEPL 357 >gi|146149942|gb|ABQ02405.1| dicer [Schistosoma mansoni] Length = 2641 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 19/116 (16%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--------SHSYQE-----------SYERLEF 45 R+ LE + Y F + SLL +A TH S S++ + Y+RLEF Sbjct: 2194 RFDELESSLNYTFKDPSLLIQAFTHPSYHQLRVLSTSNNLSDQSNLMFSTDLDCYQRLEF 2253 Query: 46 LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101 LGD +L +I+ L+ G L+ ++LV+ + +A + L + R SS Sbjct: 2254 LGDAVLDYVITRFLYEDSKQHSPGVLTDLRSALVNNNIFAALAVRIGLHKYFRASS 2309 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALT S S+ + + ER+E +GD L +++ L+ + A EG+LS + +V Sbjct: 1949 QALT-MSCSNDFI-NLERMETIGDSFLKFVVTVHLYLTYPEAHEGKLSHLRSRIVCNSNL 2006 Query: 85 SQVARELDLAS 95 ++ + DL + Sbjct: 2007 YRLGKAKDLQN 2017 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 10/115 (8%) Query: 110 FMTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAH 166 + +D+ ESL A++LD + K+R + + + +L E Sbjct: 2510 EIPKALSDIFESLAGAIFLDSNFSLDTVWQIFYPIMKERIERYTACIPKSPVRQLLEL-- 2567 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 PE R+ D R +V + G G+ + R A+ +AA L+ Sbjct: 2568 -----EPEGTKFERARRMVDGRISVCAHVLGKGRFYGVGRNYRLAKSLAAKRALR 2617 >gi|195584278|ref|XP_002081941.1| Dcr-2 [Drosophila simulans] gi|194193950|gb|EDX07526.1| Dcr-2 [Drosophila simulans] Length = 1666 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1378 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1437 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1438 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1473 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L + + EG L+ + LVS Sbjct: 1164 AITASSATDVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLL 1221 Query: 86 QVARELDLASFI 97 + D+ + Sbjct: 1222 YCLADTDIPKKL 1233 >gi|295670335|ref|XP_002795715.1| RNase3 domain-containing protein [Paracoccidioides brasiliensis Pb01] gi|226284800|gb|EEH40366.1| RNase3 domain-containing protein [Paracoccidioides brasiliensis Pb01] Length = 1346 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 21/221 (9%) Query: 11 KRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 R+GY F LL A TH+S S Y+RLEFLGD +L ++ L++ + Sbjct: 1099 DRLGYRFKYPRLLSSAFTHASYPTVWSKVPCYQRLEFLGDSLLDMVCVEHLYHKYPDRDP 1158 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 L+ V + +L L R+ + + + +++E+ I A+++ Sbjct: 1159 QWLTEHK---VFSNHLKMRGWKLKLQ---RLKASIHQTFG-QRPVTLRNMLEAYIGAIFV 1211 Query: 129 DG--GIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 D EV F KY++ ++ + T + P +V F Sbjct: 1212 DSNFSFEVVEDFFQQYPKKYFEDISIYDTFANKHP-TA---CTLPRTAFMPAGEVDFVD- 1266 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I A+G+ S A+ A+ L + Sbjct: 1267 AAECRVF-AAVIIHDEFVAEGIASSAGYAKVKASENALAKL 1306 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 64/182 (35%), Gaps = 32/182 (17%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT H + ++YERLEFLGD L + S LF Sbjct: 914 PELALEALTKDSDNTEEHRAEQIHFQRGMGKNYERLEFLGDCFLKMSTSISLFAMNADND 973 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ------ADVVES 121 E + V+ L+ + A L + F+R R++ + AD+ E+ Sbjct: 974 EFDFHVKRMCLICNQNLFNTAMSLGIYEFVRTQGFSRRNWYPEGIKLLQADKSIADICEA 1033 Query: 122 LIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 LI A L GG + A V + + D Q + P Y++ Sbjct: 1034 LIGASLLSGGRVHRFDTAVKAVTAFVNSENHQVS----DW----QSYV--GLYSLPRYQI 1083 Query: 178 TF 179 T Sbjct: 1084 TE 1085 >gi|80979101|gb|ABB54753.1| Dicer-2 [Drosophila simulans] Length = 1714 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1521 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L + + EG L+ + LVS Sbjct: 1192 AITASSATDVF--DMERLEILGDSFLKLCATLYLASKYSDWNEGTLTQVKSKLVSNRNLL 1249 Query: 86 QVARELDLASFI 97 + D+ + Sbjct: 1250 YCLADTDIPKKL 1261 >gi|80979105|gb|ABB54755.1| Dicer-2 [Drosophila simulans] gi|80979109|gb|ABB54757.1| Dicer-2 [Drosophila simulans] Length = 1714 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1521 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L + + EG L+ + LVS Sbjct: 1192 AITASSATDVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLL 1249 Query: 86 QVARELDLASFI 97 + D+ + Sbjct: 1250 YCLADTDIPKKL 1261 >gi|80979107|gb|ABB54756.1| Dicer-2 [Drosophila simulans] Length = 1567 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1521 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L + + EG L+ + LVS Sbjct: 1192 AITASSATDVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLL 1249 Query: 86 QVARELDLASFI 97 + D+ + Sbjct: 1250 YCLADTDIPKKL 1261 >gi|80979115|gb|ABB54760.1| Dicer-2 [Drosophila simulans] Length = 1714 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1521 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L + + EG L+ + LVS Sbjct: 1192 AITASSATDVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLL 1249 Query: 86 QVARELDLASFI 97 + D+ + Sbjct: 1250 YCLADTDIPKKL 1261 >gi|80979103|gb|ABB54754.1| Dicer-2 [Drosophila simulans] Length = 1537 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1521 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L + + EG L+ + LVS Sbjct: 1192 AITASSATDVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLL 1249 Query: 86 QVARELDLASFI 97 + D+ + Sbjct: 1250 YCLADTDIPKKL 1261 >gi|80979111|gb|ABB54758.1| Dicer-2 [Drosophila simulans] Length = 1564 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1521 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L + + EG L+ + LVS Sbjct: 1192 AITASSATDVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLL 1249 Query: 86 QVARELDLASFI 97 + D+ + Sbjct: 1250 YCLADTDIPKKL 1261 >gi|80979113|gb|ABB54759.1| Dicer-2 [Drosophila simulans] Length = 1565 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1521 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L + + EG L+ + LVS Sbjct: 1192 AITASSATDVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLL 1249 Query: 86 QVARELDLASFI 97 + D+ + Sbjct: 1250 YCLADTDIPKKL 1261 >gi|322704697|gb|EFY96289.1| Dicer-like protein 1 [Metarhizium anisopliae ARSEF 23] Length = 1476 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 34/193 (17%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSA 66 ++ IGY F + LL A H S + + +Y+RLEFLGD +L + I LF + A Sbjct: 1199 KVKASIGYNFRSPKLLRSAFKHPSYPYEPELPNYQRLEFLGDALLDVAIVDFLFQRYPLA 1258 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM-------------- 111 L+ ++ S S + EL L I S + + F+ Sbjct: 1259 DPQWLTEHKMAMASNHFFSFLCVELGLHRHILSTGSSIMGHIAGFVEQIEKAKSQTEDGV 1318 Query: 112 ------------TSIQADVVESLIAALYLDGGIEVA------GTFVDKYWKQRALKSGKF 153 +D++E+++ A+Y D + F+ Y++ L Sbjct: 1319 LQLDFWLNTEHPPKALSDILEAVVGAMYEDSKYDYNSVRNFFTKFIAPYFQDMTLYDTYA 1378 Query: 154 RRDAKTELQEWAH 166 T+L + Sbjct: 1379 GGHPVTQLTKLMQ 1391 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 59/161 (36%), Gaps = 25/161 (15%) Query: 20 RSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 L +ALT + ++YERLEFLGD L + + LF + E E V Sbjct: 1017 PPLALEALTKGEEDVDVQTSKNYERLEFLGDAFLKMATTISLFTLIPNRNEFEYHVERMI 1076 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVC-------------------SFMTSIQADV 118 L+ + A + L ++R S + ADV Sbjct: 1077 LICNKNLFNHAVDRGLQEYVR-SRGFDRRSWYPDLVLRKGKKHKPVGLTQRLADKSIADV 1135 Query: 119 VESLIAALYLD--GGIEVAGTFVDKYWKQRALKSGKFRRDA 157 E+LI A Y+ G+++A V + + + K+ D Sbjct: 1136 CEALIGAAYMTEPEGMDLAVKAVTVMVQSKNHRMKKYS-DY 1175 >gi|195996181|ref|XP_002107959.1| hypothetical protein TRIADDRAFT_51985 [Trichoplax adhaerens] gi|190588735|gb|EDV28757.1| hypothetical protein TRIADDRAFT_51985 [Trichoplax adhaerens] Length = 685 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 95/247 (38%), Gaps = 45/247 (18%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIST 57 +A LE +GY+F +R LL ALTH++ +H E Y+RLEFLGD IL ++ Sbjct: 426 NAHNLKDLEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAILQYIVVR 485 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-------------------- 97 ++ ++ K +L + + E+ + + + + Sbjct: 486 HCYHANNNYKPADLHDFVEASLQNESLAVMTMVYGIHKYFFYNSPSLFSQINQLLQIVDT 545 Query: 98 ------RVSSDLRKDV-------CSFMTSIQADVVESLIAALYLDGG--IEVAGTFVDKY 142 R+S++ + V + D+ ESLI A+++D G IEV V + Sbjct: 546 NEECEQRLSTEEKALVYSNSLKDGVMIPKPLGDLFESLIGAIFIDCGRSIEVVNDLVLRL 605 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 + + + K+ H KF +K D+ R + +++ + Sbjct: 606 LQPQHAIFAQGV--PKSP-IRILHEKFPSGLLFK--KEKTEDNSLR-KLSLQVPDGSYFT 659 Query: 203 GMDCSKR 209 + + Sbjct: 660 ATGINYK 666 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 KALT + + + + E LEFLGD L +S F + EG+LS + +VS E Sbjct: 248 KALTLARANDDF--NLETLEFLGDSYLKYAVSISFFLSYSKFHEGQLSSLKSKIVSNENL 305 Query: 85 SQVARELDLASFIR 98 Q+ ++ L +I Sbjct: 306 YQIGIKMGLPGYII 319 >gi|169608916|ref|XP_001797877.1| hypothetical protein SNOG_07542 [Phaeosphaeria nodorum SN15] gi|160701743|gb|EAT85008.2| hypothetical protein SNOG_07542 [Phaeosphaeria nodorum SN15] Length = 1017 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 61/276 (22%), Positives = 93/276 (33%), Gaps = 63/276 (22%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNH 62 + LE IGY F + LL +ALTH+S S + SYERLEFLGD +L +IS L H Sbjct: 710 MGLDVLETLIGYTFKKKPLLLEALTHASFSGPHVHCSYERLEFLGDAVLDYIISKRLHAH 769 Query: 63 FDSAKEGELSVRFNSLVSAETCS-------------------QVARELDLASFIRVSS-- 101 ++ + V+A + +++ + F+R S Sbjct: 770 SPELSHQKMHAIRTATVNASFLAFRLFETTIDEETINKTSMRPESQKRAIWQFLRSGSPS 829 Query: 102 ----------------DLRKDVCSFM-------------TSIQADVVESLIAALYLD--G 130 D + +D+VES+I A+Y+D G Sbjct: 830 LNANRDNALRQHEQVRDEIIIGLNEAARFPWHLFALTDPPKFLSDMVESVIGAVYIDSLG 889 Query: 131 GIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF--RSGPD 184 I V + L +G K L A K +Y + Sbjct: 890 DILTCEAIVRRLGILDCLDHILCNGVDCLHPKERLGHLAVDKG---VQYARVGMNTEPNE 946 Query: 185 HDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEV 219 D + V++ G + AE VAA + Sbjct: 947 GDKMYKCQVKVGGEDVGDVAEGLKRLNAETVAAWKA 982 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 19/139 (13%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL +AL S + ++Y+RLEFLGD IL + + L E L+ + +VS Sbjct: 548 LLTRAL--KSSAADGNDNYQRLEFLGDCILKFIATVHLMAANPKWPESHLTAKKGRIVSN 605 Query: 82 ETCSQVARELDLASFI------------RVSSDLRKDVC-----SFMTSIQADVVESLIA 124 ++ L F+ R + DL + + + AD++ESLI Sbjct: 606 GFLARATIAAGLDRFMITKSFTGAKWAPRYAGDLLAETGPAVKEERSSKLIADIIESLIG 665 Query: 125 ALYLDGGIEVAGTFVDKYW 143 A Y GG E A V Sbjct: 666 ACYTVGGFEKAVLCVQTLL 684 >gi|194755862|ref|XP_001960198.1| GF13246 [Drosophila ananassae] gi|190621496|gb|EDV37020.1| GF13246 [Drosophila ananassae] Length = 1727 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + ++ LE+ +GY F +R L +ALTH S ++ Y++LEF+GD IL LIS +F + Sbjct: 1441 INHANLEQNLGYTFKDRGYLLQALTHPSYPTNRITGCYQQLEFIGDAILDFLISGYIFEN 1500 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G+L+ ++LV+ T + + + FI Sbjct: 1501 NTKMTPGQLTDLRSALVNNTTLACICVRHKIHLFIL 1536 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 26/59 (44%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLE LGD L + S L N + EG L+ + LVS E D+ + I Sbjct: 1218 DMERLEMLGDSFLKMSGSLYLANRYADWNEGTLTQVKSKLVSNRNLLYCLSETDIPTRI 1276 Score = 38.1 bits (88), Expect = 0.93, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 11/76 (14%) Query: 110 FMTSIQADVVESLIAALYLDG-GIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHA 167 + DV+E+LIAA+YLD + + +K + + + +L E Sbjct: 1612 DVPKALGDVLEALIAAVYLDCRDLHRTWQVIYNLFKPEIKEFTRNVPINPIRQLNE---- 1667 Query: 168 KFGVTPEYKVTFRSGP 183 +P Y SGP Sbjct: 1668 HKLASPIY-----SGP 1678 >gi|194880776|ref|XP_001974538.1| GG21041 [Drosophila erecta] gi|190657725|gb|EDV54938.1| GG21041 [Drosophila erecta] Length = 1729 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 84/236 (35%), Gaps = 71/236 (30%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1439 INHYHLENNLGYTFKDRGYLLQALTHPSYPTNRITGCYQELEFIGDAILDFLISVYIFEN 1498 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARE-------------------------------- 90 + G L+ ++LV+ T + + Sbjct: 1499 NTNMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAMLAESISKFVHFQESQRHRV 1558 Query: 91 -----------------LDLASFIRV----------SSDLRKDVCS---------FMTSI 114 LDL ++ + S + + D + Sbjct: 1559 TNHVRILLEEADVQPTSLDLDDYLDMTELNNALKSISQEEQNDQPRGEFNMSTNVDVPKA 1618 Query: 115 QADVVESLIAALYLDG-GIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAK 168 DV+E+LIAA+YLD ++ + +K + + + +L E HA Sbjct: 1619 LGDVLEALIAAIYLDCRDLQRTWEVIFNLFKPELQEFARNVPINPIRQLMEHRHAN 1674 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T S + ERLE LGD L L + L N + EG L+ + LVS Sbjct: 1205 AIT--SSGTADVYDMERLEILGDSFLKLSATLYLANKYSDWNEGSLTQVKSMLVSNRNLL 1262 Query: 86 QVARELDLASFI 97 R+ D+ I Sbjct: 1263 YCLRDTDIPKKI 1274 >gi|224088236|ref|XP_002308384.1| dicer-like protein [Populus trichocarpa] gi|222854360|gb|EEE91907.1| dicer-like protein [Populus trichocarpa] Length = 1588 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 94/254 (37%), Gaps = 47/254 (18%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL--- 58 ++ +TLE +G+ F + LL +A H S + EF G IL ++ + Sbjct: 1176 PSMDLATLENLLGHQFLYKGLLLQAFVHPSHKNGG-------EF-GVMILQFAMTLMFPP 1227 Query: 59 -----LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---------- 103 + K G L+ + LV+ + VA + ++ SD Sbjct: 1228 EIGVPWRCFYPKMKPGHLTDLRSVLVNNRAFASVAVDRSFHEYLICDSDALSAATKKFVD 1287 Query: 104 ---------RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKF 153 R + D+VES + A+ LD G ++ + + + Sbjct: 1288 FVRTPKSERRLLEGPKCPKVLGDLVESSVGAILLDTGFDLNHIWKIMLSFLDPISSFSNL 1347 Query: 154 RRDAKTELQEWAHAKFGVTPEYKV-TFRSGPDHDPRFTVVVEISGLAP---AQGMDCSKR 209 + + EL+E + +++V + G F+V V +SG A + +K+ Sbjct: 1348 QINPVRELKELCQSHNW---DFEVPASKKG----RTFSVDVTLSGKDMNISASASNSNKK 1400 Query: 210 AAEQVAAAEVLKRE 223 A ++A+ ++ R Sbjct: 1401 EAIRMASEKIYARL 1414 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 26/126 (20%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS--------------AETCSQ 86 ERLE LGD L + F D+ EGEL+ + ++ V C + Sbjct: 1023 ERLETLGDAFLKFAVGRHFFLLHDTLDEGELTRKRSNAVFIRDQPFDPYQFFALGHPCPR 1082 Query: 87 VARELDLASF----------IRVSSDLRKDVCSFM--TSIQADVVESLIAALYLDGGIEV 134 + + + S++R +DVVE+LI A +D G + Sbjct: 1083 ICTKESEGTIHSQCGSHVTGQAKGSEVRCSKGHHWLHNKTVSDVVEALIGAFLVDSGFKA 1142 Query: 135 AGTFVD 140 A F+ Sbjct: 1143 AIAFLR 1148 Score = 41.6 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 17/40 (42%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 A++ L+E A P ++ GP H FT V + Sbjct: 1508 ARSRLREICAANSWKPPSFECCTEEGPSHLKSFTYKVVVE 1547 >gi|240277023|gb|EER40533.1| RNase3 domain-containing protein [Ajellomyces capsulatus H143] gi|325094961|gb|EGC48271.1| RNase3 domain-containing protein [Ajellomyces capsulatus H88] Length = 380 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 22/218 (10%) Query: 23 LEKA-LTHSSISHSY-----QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 L+ A TH + + +++YER+E LGD + ++ + L+++ F G LS Sbjct: 139 LQTAMFTHEGVHNPNTASLPEKNYERMELLGDAYIEIIATRLVWDTFPRLPAGRLSQIRE 198 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGIE 133 LV ET ++ L ++V ++R V ++ T I+ D+ E+ +AA+ L D G++ Sbjct: 199 LLVKNETLAEYTSLYGLDQKLQVPPNIRDQVKTW-TKIKGDLFEAYVAAVILSNRDNGVQ 257 Query: 134 VAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD---PR 188 +A ++ + W + ++ K K +L + K Y + + H Sbjct: 258 LAEDWLTQLWIPKLEQIEKDKPVLRYKEDLAKLVMDKGIKL-SY-LDEKQSICHSGGLQT 315 Query: 189 FTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLK 221 F V V ++G G SK A AA + L+ Sbjct: 316 FFVGVYLTGWGHKNECLGSGTGFSKVIAGNEAARKALE 353 >gi|80979095|gb|ABB54750.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHFYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1519 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L + + EG L+ + LVS Sbjct: 1190 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1247 Query: 86 QVARELDLASFI 97 + D+ + Sbjct: 1248 FCLIDADIPKTL 1259 >gi|307133775|ref|NP_001182502.1| endoribonuclease Dicer isoform 2 [Homo sapiens] gi|300517087|gb|ADK25182.1| t-Dicer [Homo sapiens] Length = 1829 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ + +A + D + + Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 1759 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372 >gi|260172508|ref|ZP_05758920.1| ribonuclease III [Bacteroides sp. D2] Length = 214 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFG 170 + + E+ I A+YLD G E F+++ R + K R + K++L EW+ Sbjct: 1 MYGNAFEAFIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKN-K 59 Query: 171 VTPEYKVTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + +++ + DHD P F V I GL G SK+ ++Q AA +K+ Sbjct: 60 MEVSFELIEQF-LDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 112 >gi|281427125|ref|NP_001163918.1| dicer 1, ribonuclease type III [Xenopus laevis] gi|261826170|gb|ACX94846.1| truncated double-stranded RNA-specific endoribonuclease type III [Xenopus laevis] Length = 1795 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1625 FENFEKKINYQFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1684 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ + +A + D + + Sbjct: 1685 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 1718 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE GD L I+T LF + + EG LS + Sbjct: 1270 NPGLILQALTLSNASDGF--NLERLEMPGDSFLKHAITTYLFCTYPDSHEGRLSYMRSKK 1327 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1328 VSNCNLYRLGKKKG 1341 >gi|296081735|emb|CBI20740.3| unnamed protein product [Vitis vinifera] Length = 1688 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 21/185 (11%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLF 60 A LE +IGY F+ + LL +A+TH++ Y+RLEFLGD +L +LI+ L+ Sbjct: 1262 KANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVLITWHLY 1321 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110 GEL+ ++ V+ E+ +QVA +L ++ S L Sbjct: 1322 QSHRDIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKYLSGSDD 1381 Query: 111 ---------MTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160 D+VES+ A+ +D + + + + K + K E Sbjct: 1382 VPNPLQSTKGPKALGDLVESIAGAILIDTKLNLNEVWRIFKPLLSPIVTPDKLELPPLRE 1441 Query: 161 LQEWA 165 L E Sbjct: 1442 LNELC 1446 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 64/181 (35%), Gaps = 49/181 (27%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 SL+ +A+T ++ S S ERLE LGD +L +S LF + EG+LS R + +V Sbjct: 1072 SLILEAIT--TLRCSESFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVVC 1129 Query: 81 AETCSQVARELDLASFIR------------------------------------------ 98 T ++ + L +IR Sbjct: 1130 NSTLHKLGTDRSLQGYIRDGAFDPRRWVAPGQRSIRPVPCSCGVDALEVPLDGKFQTEDT 1189 Query: 99 ---VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 V + + AD VE+LI A Y+ GG+ A + W ++ Sbjct: 1190 KIVVGKSCDRGHRWMGSKTIADCVEALIGAYYVGGGLNAALHLMK--WFGIDVELEPSLV 1247 Query: 156 D 156 D Sbjct: 1248 D 1248 >gi|126179439|ref|YP_001047404.1| ribonuclease III [Methanoculleus marisnigri JR1] gi|125862233|gb|ABN57422.1| RNAse III [Methanoculleus marisnigri JR1] Length = 154 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 7/143 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNH 62 LE+RI Y+F + LL++AL H S S+ + E + L LGD +L ++ LL Sbjct: 5 LEERINYSFKQKDLLQRALLHRSRSNEERQKQKICEDQDALRTLGDAVLKTILCDLLMRS 64 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 +GE++++ +++ +++ R DL I V R + ++ A+ +E++ Sbjct: 65 GYE-TKGEITIKKSTIERRPFLAELGRRFDLQDKILVGEGARMQKHNEEPNVIAETLEAI 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ 145 I A+YLDGG E A V +++ Sbjct: 124 IGAMYLDGGYESAKKAVSGWYEP 146 >gi|330944921|ref|XP_003306459.1| hypothetical protein PTT_19601 [Pyrenophora teres f. teres 0-1] gi|311316023|gb|EFQ85435.1| hypothetical protein PTT_19601 [Pyrenophora teres f. teres 0-1] Length = 1448 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 65/284 (22%), Positives = 106/284 (37%), Gaps = 71/284 (25%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +EK +GY F N++LL +ALTH + + SYER EFLGD +L ++S L+ H Sbjct: 1159 MSLGLIEKLLGYKFNNKALLLEALTHVTFRGLNTNCSYERHEFLGDAVLDYIVSRKLYAH 1218 Query: 63 FDSAKEGELSVRFNSLVSAETCSQ------VAREL-------------DLASFIRVSSDL 103 ++ ++V+A + V EL L F+R +S+ Sbjct: 1219 KPELSHRKMHGIRTAMVNASFLAYSMFETTVTEELTNKNTLEPEVHQRALWQFLRCTSNE 1278 Query: 104 ----------RKDVCSFM---------------------TSIQADVVESLIAALYLD--G 130 + +D+VES+I ALY+D G Sbjct: 1279 LVASRIIATQQHAEARNRIATGLKHDSRFPWQALSLTDPPKYLSDIVESVIGALYIDSHG 1338 Query: 131 GIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY-KVTFRSGPDH 185 I FV++ +R L+ G K L A + +Y +VT S + Sbjct: 1339 SIATCEEFVNRLGIMSCLKRILRDGVDCLHPKERLGILA---VDKSVKYARVTSSSKSEG 1395 Query: 186 DPR-------FTVVVEISGLAPAQG--MDCSKRAAEQVAAAEVL 220 + V V+I G + + AE +AA + + Sbjct: 1396 AREVGVLEEGYKVQVKIGEQDVG-GVVVGLKRLQAETIAAWKAI 1438 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 19/142 (13%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + +L ALT SS ++ Y+RLEFLGD IL + S L EG L+ + L Sbjct: 994 HLPVLVTALT-SSATNEGN-DYQRLEFLGDCILKFIASLHLMAANLQMPEGMLTGKKGKL 1051 Query: 79 VSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFMTSIQADVVES 121 VS ++ L +I ++ + + + ADV+ES Sbjct: 1052 VSNGYLARATLAAGLDQYIFYKRFTGAKWKPRYISLVLAESTLPEKQEKSSKLIADVIES 1111 Query: 122 LIAALYLDGGIEVAGTFVDKYW 143 LI A Y+ GG A V Sbjct: 1112 LIGASYIIGGFSKAFACVQTLL 1133 >gi|154276932|ref|XP_001539311.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150414384|gb|EDN09749.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 380 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 22/217 (10%) Query: 23 LEKA-LTHSSISHSY-----QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 L+ A TH + + +++YER+E LGD + ++ + L+++ F G LS Sbjct: 139 LQTAMFTHEGVHNPNTASLPEKNYERMELLGDAYIEIIATRLVWDTFPRLPAGRLSQIRE 198 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGIE 133 LV ET ++ L ++V ++R + ++ T I+ D+ E+ +AA+ L D G++ Sbjct: 199 LLVKNETLAEYTSLYGLDQKLQVPPNIRDQIKTW-TKIKGDLFEAYVAAVILSNRDNGVQ 257 Query: 134 VAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD---PR 188 +A ++ + W + ++ K K +L + K Y + + H Sbjct: 258 LAEDWLTQLWIPKLEQIEKDKPVLRYKEDLAKLVMDKGIKL-SY-LDEKQSICHSGGLQT 315 Query: 189 FTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVL 220 F V V ++G G SK A AA + L Sbjct: 316 FFVGVYLTGWGHKNECLGSGTGFSKVIAGNEAARKAL 352 >gi|40215441|gb|AAR82738.1| SD11113p [Drosophila melanogaster] Length = 1640 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1410 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1469 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1470 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1505 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L + + EG L+ + LVS Sbjct: 1176 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1233 Query: 86 QVARELDLASFI 97 + D+ + Sbjct: 1234 FCLIDADIPKTL 1245 >gi|225684610|gb|EEH22894.1| dicer [Paracoccidioides brasiliensis Pb03] Length = 1415 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 54/283 (19%), Positives = 98/283 (34%), Gaps = 72/283 (25%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY F + L +A TH S + SY+RLEFLGD IL +I +FN + Sbjct: 1128 FRDIESLVGYIFNKKVFLAQAFTHPS-NPGSTMSYQRLEFLGDSILDHIIVDHIFNSPRN 1186 Query: 66 AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99 + ++ + SL +A+ + + R++ L ++R Sbjct: 1187 FQHVDMHLMRASLANADFLAFLCIGMTTEEERGEIVEASRNGTFTRMTTRKISLWQYMRH 1246 Query: 100 SSDLRKDVCSFMT--------------------------------SIQADVVESLIAALY 127 + V T +D++ES++ A++ Sbjct: 1247 GTSWELTVSQQQTVNQYQALKADITKALYESDTYPWALLSRLRAQKFFSDLIESVLGAIF 1306 Query: 128 LD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK---VT 178 +D G ++ F+++ + +R L+ K L E + Y+ V Sbjct: 1307 IDSHGSLDACAAFLERIGLMNFLRRILQDEIDIMHPKQRLGEMV---GQMQVRYETVHVV 1363 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVL 220 G D +T V + + S E AA L Sbjct: 1364 EEEGGDALGHWTCKVFVDDECVFEEHDGVSLVEVETKAAEAAL 1406 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 22/147 (14%) Query: 17 FANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 F + +L+ AL + +E +Y+R+EFLGD IL S L EG LS Sbjct: 957 FTDLNLVITAL----CAPDAREATNYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNA 1012 Query: 75 FNSLVSAETCSQVARELDLASFIRV--------------SSDLRKDVCSF--MTSIQADV 118 + +VS + S A E L FI + + +D+ T ADV Sbjct: 1013 KDEVVSNKRLSYAAIETGLDKFIFMDIFTGVKWRPRYNKAHVEEQDIPRREMSTKTLADV 1072 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQ 145 +E+L+ A +DGG + + + Sbjct: 1073 IEALLGAATIDGGRTKVEKCLKIFLPE 1099 >gi|22026807|ref|NP_523778.2| Dicer-2 [Drosophila melanogaster] gi|21627058|gb|AAF57830.2| Dicer-2 [Drosophila melanogaster] Length = 1722 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1431 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1490 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1491 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1526 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L + + EG L+ + LVS Sbjct: 1197 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1254 Query: 86 QVARELDLASFI 97 + D+ + Sbjct: 1255 FCLIDADIPKTL 1266 >gi|16215719|dbj|BAB69959.1| double-strand-specific ribonuclease [Drosophila melanogaster] Length = 1722 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1431 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1490 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1491 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1526 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L + + EG L+ + LVS Sbjct: 1197 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1254 Query: 86 QVARELDLASFI 97 + D+ + Sbjct: 1255 FCLIDADIPKTL 1266 >gi|80979087|gb|ABB54746.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1519 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L + + EG L+ + LVS Sbjct: 1190 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1247 Query: 86 QVARELDLASFI 97 + D+ + Sbjct: 1248 FCLIDADIPKTL 1259 >gi|225429722|ref|XP_002280293.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1661 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 21/185 (11%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLF 60 A LE +IGY F+ + LL +A+TH++ Y+RLEFLGD +L +LI+ L+ Sbjct: 1235 KANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVLITWHLY 1294 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110 GEL+ ++ V+ E+ +QVA +L ++ S L Sbjct: 1295 QSHRDIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKYLSGSDD 1354 Query: 111 ---------MTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160 D+VES+ A+ +D + + + + K + K E Sbjct: 1355 VPNPLQSTKGPKALGDLVESIAGAILIDTKLNLNEVWRIFKPLLSPIVTPDKLELPPLRE 1414 Query: 161 LQEWA 165 L E Sbjct: 1415 LNELC 1419 Score = 72.4 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 64/181 (35%), Gaps = 49/181 (27%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 SL+ +A+T ++ S S ERLE LGD +L +S LF + EG+LS R + +V Sbjct: 1045 SLILEAIT--TLRCSESFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVVC 1102 Query: 81 AETCSQVARELDLASFIR------------------------------------------ 98 T ++ + L +IR Sbjct: 1103 NSTLHKLGTDRSLQGYIRDGAFDPRRWVAPGQRSIRPVPCSCGVDALEVPLDGKFQTEDT 1162 Query: 99 ---VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 V + + AD VE+LI A Y+ GG+ A + W ++ Sbjct: 1163 KIVVGKSCDRGHRWMGSKTIADCVEALIGAYYVGGGLNAALHLMK--WFGIDVELEPSLV 1220 Query: 156 D 156 D Sbjct: 1221 D 1221 >gi|259481091|tpe|CBF74306.1| TPA: nucleolar RNAse III, putative (AFU_orthologue; AFUA_5G04440) [Aspergillus nidulans FGSC A4] Length = 355 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 86/216 (39%), Gaps = 22/216 (10%) Query: 23 LEKA-LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LE+A TH ++ + +Y+RLE LGD + L+ + L++N F G +S LV Sbjct: 127 LERAVFTHPGVAKDSRTTYDRLEILGDAYIELISTKLIWNKFQHIPSGRISQIRELLVKN 186 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG--GIEVAGTFV 139 ET ++ A + + V ++L ++ + D+ E+ +AA+ L G VA T++ Sbjct: 187 ETLAEYATQYGIDKKASVPAELYNQPKRWI-KTKGDIFEAYVAAVILSHPDGYSVAETWL 245 Query: 140 DKYWKQRALKSGKFRRDAKTELQ--EWAHAK---FGVTPEYKVTFRSGPDHD---PRFTV 191 + W + + Q E K G Y + + H F + Sbjct: 246 SELWSPKLDSFEGSV----STFQAKEALAKKINGRGAKLRY-IDEKESVQHQGGTQTFFI 300 Query: 192 VVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + G +K A AA + L+ Sbjct: 301 GVYFTGWGWNNKHLGSGQGSNKTIAGDRAAQQALEN 336 >gi|85083779|ref|XP_957185.1| hypothetical protein NCU01762 [Neurospora crassa OR74A] gi|7800875|emb|CAB91233.1| related to Ribonuclease III [Neurospora crassa] gi|28918272|gb|EAA27949.1| predicted protein [Neurospora crassa OR74A] Length = 352 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 89/250 (35%), Gaps = 51/250 (20%) Query: 19 NRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 + +L + ALTH +++ SYERLE++GD L L+ S+ ++ F + G+ + R Sbjct: 67 DPALKKAALTHPGKANNDPVASYERLEWIGDAYLELIASSFIYQTFPTLPAGKSAQRREM 126 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCS---------FMTSIQADVVESLIAALYL 128 L+ T + + L + + I D+ E+ + + L Sbjct: 127 LIRNTTLGEFSVYYGLDKMADI-PEEFNMEGRVGGTNASQKVRIKILGDLFEAYVGGVIL 185 Query: 129 ---DGGIEVAGTFVDKYWKQRALK-----------------SGKFRRDAKTELQEWAHAK 168 GI+ A ++ W + + D KT L E Sbjct: 186 SDPANGIQRASDWLKALWGPLMAEYIREEEKKARKPEQKQSASGQTLDPKTVL-EATIGA 244 Query: 169 FGVTPEYKVTFRSGPDHD--------PRFTVVVEISG-----LAPAQGMDCSKRAAEQVA 215 GV EYK P + P F + ++G L G SK+ A Q A Sbjct: 245 RGVKIEYKDL----PSKNLKDRGTKLPLFAIGCFMTGWGETNLQLGHGSALSKKEAGQKA 300 Query: 216 AAEVL--KRE 223 A L K+ Sbjct: 301 AQMALDNKKL 310 >gi|198457361|ref|XP_001360634.2| GA19635 [Drosophila pseudoobscura pseudoobscura] gi|198135949|gb|EAL25209.2| GA19635 [Drosophila pseudoobscura pseudoobscura] Length = 1720 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 14/154 (9%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE+ +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1438 INHSYLEQNLGYKFRDRGYLLQALTHPSFPTNRLTGCYQELEFIGDAILDFLISAYIFEN 1497 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + + GEL+ ++LV+ T + L FI + L + S Q Sbjct: 1498 NNKLRPGELTDLRSALVNNTTLGCICVRHKLHLFILAENALLSETISKFVKFQESQGH-- 1555 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156 V ++R ++ D Sbjct: 1556 -----------RVTNHVRFLLEERDVQPVILDLD 1578 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 28/62 (45%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ER E LGD L + S L + + EG L+ + LVS + RE D+ S I Sbjct: 1216 DMERAELLGDSFLKMSASLYLASRYPDWNEGTLTQVKSRLVSNKNLMYCLRETDIPSRIS 1275 Query: 99 VS 100 S Sbjct: 1276 CS 1277 >gi|297836192|ref|XP_002885978.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297331818|gb|EFH62237.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 740 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 39/232 (16%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFN 61 +EK + Y F +++LL++A+T +S S++ S +ERLEFLGD +L ++ S + Sbjct: 2 ESVEAVEKILNYTFTDKNLLKEAITKTSGSNTESSSLLFERLEFLGDSVLLVVFSNHIEI 61 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----------RVSSDLRKD----- 106 + + +L+ + VS ET ++VA +L FI ++S L Sbjct: 62 TYPNLHPNDLNDVRIANVSNETFARVAVNNNLHQFIIFDAPNPLLHKMSHVLTNKWCHVL 121 Query: 107 -------------------VCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQR 146 AD+VE++ A+Y+D +V + + + + Sbjct: 122 KIKDFSEAVKEEVYPAPCGGLVKAPKFLADLVEAIAGAVYIDVDFDVQRVWEIFRVLVEP 181 Query: 147 ALKSGKFRRDA-KTELQEW-AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 R+ +T L+ K G E GP + +F V I Sbjct: 182 ICTLDDLRKQPERTYLRLLGLGDKLGKRIEVFFEEEGGPKIEQKFVCSVNIE 233 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 97/239 (40%), Gaps = 24/239 (10%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +EK + Y+F N++LL +ALTH+S S ++RL F+G + L + ++ + Sbjct: 373 VKAVEKILNYSFTNKNLLREALTHNS---SNLLPFQRLMFVGKAGISLAFANHMYLTYPK 429 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLRKDVCS 109 EL++ N+ + ++VA + + F++ + + D Sbjct: 430 LGPKELTMLQNANTCNDRYARVAVKRGIYQFLKCNVRTSKRQIIEFIKMLGKEDDPDPFR 489 Query: 110 FM--TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAH 166 + I D+VES+ A+Y+D +V + + + + RR L + Sbjct: 490 SVKAPKILTDLVESVAGAVYIDVNRDVKRLWEILRGLFEPIYTLDDIRRKPHPLLTLFCL 549 Query: 167 A-KFGVTPEYKVTFRSGPDHDPRFTV-VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K G E++ T+ V + A G C++ A++ AA L++ Sbjct: 550 GYKHGKRIEFRYRECEKSSGMNEATITEVYVDDKFIACGKSCNRAASKMRAATMALEKL 608 >gi|221130589|ref|XP_002165718.1| PREDICTED: similar to dicer 1 [Hydra magnipapillata] Length = 1615 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 33/166 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 E I Y F N+S L +A TH S S+S Y++ EFLGD IL LI+ + ++ Sbjct: 784 LQKFEDHISYRFLNKSHLIQAFTHLSYLSNSVTGCYQQYEFLGDAILDFLITLHIQSNTQ 843 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----------------- 107 + G+L+ +++V+ T +A + +I SS+ Sbjct: 844 NLSPGQLTYFRSAVVNNNTFGLLAIKHSFYKYIYSSSNELFSSYNSFIEIVKDDHGLKDE 903 Query: 108 ---------------CSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 + D+ ES+ A++LD G+++ + Sbjct: 904 YFESPFVICPTGSEEGYQAPKVLGDLFESVAGAIFLDSGLDLVTVW 949 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 67/183 (36%), Gaps = 36/183 (19%) Query: 2 SALRYSTLEKRIGYAFAN---RSLLE--KALTHSSISHSYQESYERLEFLGDRILGLLIS 56 S L L + Y N S+L+ +ALT S + ERLE LGD L +S Sbjct: 564 SVLDLENLLQLKNYVTENVKSPSVLKIFEALTTRQASMPF--DLERLEVLGDSFLKQAVS 621 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM----- 111 +F S EG+L++R +S E +V + + + + I S K S Sbjct: 622 IFVFFQNPSFHEGKLTIRRKKCISNENLCKVGKSVGIQNIICNSQFGTKSSNSENRNPWT 681 Query: 112 ------------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147 AD VE+LI + GG+ +A F+ + Sbjct: 682 VWLPPGYLRAELDDMKQYTYQNVQPKSIADCVEALIGVYFEVGGVNLALCFMQNFLNIPV 741 Query: 148 LKS 150 L S Sbjct: 742 LHS 744 >gi|296417821|ref|XP_002838549.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634492|emb|CAZ82740.1| unnamed protein product [Tuber melanosporum] Length = 1490 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 53/288 (18%), Positives = 97/288 (33%), Gaps = 80/288 (27%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFD 64 LE IGY F +++LL +A+TH S SY+R+EFLGD +L +++ LF Sbjct: 1105 LKGLESLIGYHFTHKALLLEAITHPSWESDMTSLSYQRMEFLGDALLDMVVVNHLFFSPR 1164 Query: 65 SAKEGELSVRFNSLVSAETCSQV---------------------------ARELDLASFI 97 + ++ + +S+V+ + + +R+++L FI Sbjct: 1165 NLSHIDMHLYKSSVVNGNFLAYLSLRCAVDAKYYGISQRAQSTEVEIVNKSRKVELWKFI 1224 Query: 98 R---------------------------------------VSSDLRKDVCSFMTSIQADV 118 R +S +DV Sbjct: 1225 RHQHQQIQHAQKICSKRYEEDLRDSVQAALDYGKDYPWTELSPLESDKSGRN--KFLSDV 1282 Query: 119 VESLIAALYLDGG--IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 VE++I A+++D G E + ++ +R + +L E A T Sbjct: 1283 VEAIIGAVFIDSGGDFETVQSLAERLGILKVLKRLVADHVDVTHPVKKLGEAVAANGQGT 1342 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +Y + G ++ V ++ S+ A AA L Sbjct: 1343 VQYVQSVEGGG-----YSCAVMVNEEKLLSVRAASRSEARTKAAELAL 1385 Score = 84.0 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 33/175 (18%) Query: 7 STLEKRIGYA--FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE+ + + F + + AL+ SS Y+R EFLGD +L L S L + Sbjct: 919 ADLERTLLHPVGFNSIPKMVTALSASSA--RESTDYQRFEFLGDSVLKFLTSVNLLDEHP 976 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR--------------VSSDLRKDVCSF 110 EG L+ + +V+ ++ A + LA +I +S + Sbjct: 977 FWHEGYLTRKKEQMVANSRLARAAIDNRLAKWIITDIFTGSKWRPRYVISEEEEFPEKKR 1036 Query: 111 M------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT 159 T I ADVVE+LI A YL+G A + + + K+ Sbjct: 1037 KGPKQLSTKILADVVEALIGAAYLEGNYPKALKVIRAF---------GLNINWKS 1082 >gi|195150547|ref|XP_002016212.1| GL10619 [Drosophila persimilis] gi|194110059|gb|EDW32102.1| GL10619 [Drosophila persimilis] Length = 1720 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 14/154 (9%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE+ +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1438 INHSYLEQNLGYKFRDRGYLLQALTHPSFPTNRLTGCYQELEFIGDAILDFLISAYIFEN 1497 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + GEL+ ++LV+ T + L FI + L + S Q Sbjct: 1498 NTKLRPGELTDLRSALVNNTTLGCICVRHKLHLFILAENALLSETISKFVKFQESQGH-- 1555 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156 V ++R ++ D Sbjct: 1556 -----------RVTNHVRFLLEERDVQPVILDLD 1578 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 28/62 (45%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ER E LGD L + S L + + EG L+ + LVS + RE D+ S I Sbjct: 1216 DMERAELLGDSFLKMSASLYLASRYPDWNEGTLTQVKSRLVSNKNLMYCLRETDIPSRIS 1275 Query: 99 VS 100 S Sbjct: 1276 CS 1277 Score = 36.2 bits (83), Expect = 3.8, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 23/109 (21%) Query: 110 FMTSIQADVVESLIAALYLDG-GIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHA 167 + DV+E+LIAA+Y+D ++ + ++ + S +L E Sbjct: 1605 DVPKALGDVLEALIAAVYMDCRDLQTTWQMIYHLFEPELKEFSQNIPISPIRQLHE---- 1660 Query: 168 KFGVTPEYKVTFRSGPD-HDP-------RFTVVVEISGLAPAQGMDCSK 208 P Y GP D +FT + G +K Sbjct: 1661 HKLANPVY------GPPLVDKDVVMMYCQFTC---MEKTIRVTGFGSNK 1700 >gi|222629185|gb|EEE61317.1| hypothetical protein OsJ_15421 [Oryza sativa Japonica Group] Length = 1632 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 50/98 (51%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ IGY F ++ LL +A H S S Y++ EFLGD +L +I++ L+ Sbjct: 1177 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQKTEFLGDAVLEYVITSYLY 1236 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + + K G+++ + V ++ + A E + + Sbjct: 1237 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLI 1274 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 19/123 (15%) Query: 35 SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94 +RLEFLGD +L +I++ L++ + K G+++ + V ++ + A E + Sbjct: 1302 EEPACPKRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIH 1361 Query: 95 SFIR---------VSSDLRKDVCSFM----------TSIQADVVESLIAALYLDGGIEVA 135 + +S S D+VES I A+ LD G + Sbjct: 1362 KHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEPACPKALGDIVESCIGAVLLDSGFNLN 1421 Query: 136 GTF 138 + Sbjct: 1422 YVW 1424 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 40/140 (28%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ER E LGD L ++ F ++ EG+L+ R + +V+ +++ L +IR Sbjct: 1011 ERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQ 1070 Query: 101 SDL----------------------------------------RKDVCSFMTSIQADVVE 120 + + ADVVE Sbjct: 1071 QFEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNLRCTRSHHWLHRKVIADVVE 1130 Query: 121 SLIAALYLDGGIEVAGTFVD 140 SLI A ++GG + A F+ Sbjct: 1131 SLIGAFLVEGGFKAAFAFLH 1150 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPAQGMDC-SKR 209 A++ L E A + PE+K+ GP H +FT VVVEI G L K+ Sbjct: 1545 ARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQKK 1604 Query: 210 AAEQVAAAEV---LKREG 224 AA++ AA LK+ G Sbjct: 1605 AAQEHAAQGALWCLKQLG 1622 >gi|268325168|emb|CBH38756.1| conserved hypothetical protein, containing RNase3 and AIR carboxylase domain [uncultured archaeon] gi|268326276|emb|CBH39864.1| conserved hypothetical protein, containing RNase3 and AIR carboxylase domain [uncultured archaeon] Length = 421 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 71/143 (49%), Gaps = 7/143 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSIS------HSYQESYERLEFLGDRILGLLISTLLFN 61 T+E+ I Y+F ++++L +ALT + + + E E LGD +L ++ LL Sbjct: 277 TIEENIRYSFLDKNILNRALTRKAYALEQRQRNQACEDQEIFRTLGDAVLKAVLVDLLIK 336 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +E E++ + L E+ +++ REL + I + +K + + A+ E+ Sbjct: 337 SGCKTRE-EITRKKIELEREESLAKIGRELGIGESIMLGVGEKKQRANEEPYVLAETFEA 395 Query: 122 LIAALYLDGGIEVAGTFVDKYWK 144 +I A+YLDG ++A + +K Sbjct: 396 VIGAIYLDGCYDIAKKIITNLFK 418 >gi|302901921|ref|XP_003048541.1| hypothetical protein NECHADRAFT_95770 [Nectria haematococca mpVI 77-13-4] gi|256729474|gb|EEU42828.1| hypothetical protein NECHADRAFT_95770 [Nectria haematococca mpVI 77-13-4] Length = 1381 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 67/274 (24%), Positives = 108/274 (39%), Gaps = 70/274 (25%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ IGY+F +SLL +A+TH S + ++Q SYE+LEFLGD +L +I T +FN Sbjct: 1092 LEPLEELIGYSFRKKSLLIEAVTHGSYAGDTHQRSYEQLEFLGDAVLDYIIVTKVFNVKP 1151 Query: 65 SAKEGELSVRFNSLVSAETCSQVARE----------------------LDLASFIR---- 98 +L + ++V+ E + V E L L F+R Sbjct: 1152 PLPHSDLHLIKTAMVNGEFLAFVNLEHRLRRVETDVNADGVTEDTIKTLALWQFMRYTSP 1211 Query: 99 -VSSDLRKDVCSFMT--------------------------SIQADVVESLIAALYLDGG 131 + ++ + V F T +D+ E+LI A+++D G Sbjct: 1212 AIGNEQVRTVERFETLRREIVDAIENGTHYPWTLLARFQPKKFYSDLFEALIGAVWVDSG 1271 Query: 132 -IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 EV ++ + +R ++ + K EL A K EY T G Sbjct: 1272 STEVCEGVFHRFGILPYLERIIRDKVHIKHPKEELSALAVEKK---VEYNYTVLDGV--Q 1326 Query: 187 PRFTVVVEISGLAPAQGMDC-SK-----RAAEQV 214 P + +++ A +K RAAEQ Sbjct: 1327 PEYVCRLKVGDRLMADVRGGLNKEEIMTRAAEQA 1360 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 25/152 (16%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 + L+ +A+ SS S YERLEFLGD IL + EG L + Sbjct: 916 NDLQLVLEAI--SSRSAHEPVDYERLEFLGDSILKYCTVIQAYAEHPLWPEGLLVPFKDQ 973 Query: 78 LVSAETCSQVARELDLASFIRVS--SDLRKDVCSFMT---------------------SI 114 LVS + + E L+ FI + + Sbjct: 974 LVSNKRLHRACLESGLSKFILSKAFTGRSYSGKKWKPLYLDDFLPEESVEPLDRITGHKN 1033 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146 ADVVE+LI A + DGG++ A + + + Sbjct: 1034 LADVVEALIGASFQDGGMDKALKCISVFLGDK 1065 >gi|80979131|gb|ABB54768.1| Dicer-2 [Drosophila santomea] Length = 1719 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1523 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + Y ERLE LGD L L + L N + EG L+ + LVS Sbjct: 1194 AITSSSTADVY--DMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLL 1251 Query: 86 QVARELDLASFI 97 + D+ I Sbjct: 1252 YCLSDTDIPKXI 1263 >gi|322700444|gb|EFY92199.1| Dicer-like protein 2 [Metarhizium acridum CQMa 102] Length = 1441 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 59/283 (20%), Positives = 105/283 (37%), Gaps = 64/283 (22%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFN 61 LE +GY F +SLL +A+TH S Y + SYE LEF+GD IL +I ++ Sbjct: 1151 PAELKPLEHLVGYQFKKKSLLIEAMTHQSCMFDYNRRSYEHLEFIGDAILDFIIVRKMYT 1210 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARE-----------------------LDLASFIR 98 ++ ++V+ + + ++ + L L +F+R Sbjct: 1211 AGPLLAPYQMHSLKTAMVNGDFLAFLSLDHQMRRTETAVTSSLQIIDKETTPLALWTFMR 1270 Query: 99 VSSD----------------------LRKDVCSF---------MTSIQADVVESLIAALY 127 SS+ + + +D+ ESL+ A++ Sbjct: 1271 HSSEAIGIEQAATLKRYEALRGEILAALRQGSRYPWALLARLQAKKFYSDIFESLLGAVW 1330 Query: 128 LDGG-IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +D G IE+ + K+ R LK + K L + A + T Y V + Sbjct: 1331 VDSGSIELCECMLQKFGVLSILDRLLKDRVAVQHPKEVLGKMAVTQ---TVTYDVDVQEA 1387 Query: 183 PDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKREG 224 PD + FT V + + + ++ + AA E ++ G Sbjct: 1388 PDGEKAFTCRVLMGEKVVTEVVDGVTREEVKTKAAEEAIRILG 1430 Score = 92.4 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 21/156 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +TL +RI + L+ +A++ S + +YERLEFLGD IL + + Sbjct: 976 TTLLERINIT--DLGLVREAISSRSAAEPV--NYERLEFLGDSILKYCTAIQVSAIHPEW 1031 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCS 109 EG LS + LV S+ A ++ LA FI + + Sbjct: 1032 PEGYLSFFKDRLVGNSRLSRAAIDVGLAKFILTKSFTGQKWRPLYLDNYTGNPGKVSPRK 1091 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 T ADVVE+LI A Y++GGI A + + + Sbjct: 1092 ISTKTLADVVEALIGASYINGGITKAQNCISLFVNE 1127 >gi|80979133|gb|ABB54769.1| Dicer-2 [Drosophila teissieri] Length = 1719 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1523 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + + ERLE LGD L L + L N + EG L+ + LVS Sbjct: 1194 AITSSSTADVF--DMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLL 1251 Query: 86 QVARELDLASFI 97 + D+ I Sbjct: 1252 YCLSDTDIPKKI 1263 >gi|80979119|gb|ABB54762.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1523 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + Y ERLE LGD L L + L N + EG L+ + LVS Sbjct: 1194 AITSSSTADVY--DMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLL 1251 Query: 86 QVARELDLASFI 97 + D+ I Sbjct: 1252 YCLSDTDIPKRI 1263 >gi|195487840|ref|XP_002092062.1| Dcr-2 [Drosophila yakuba] gi|194178163|gb|EDW91774.1| Dcr-2 [Drosophila yakuba] Length = 1730 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1439 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1498 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1499 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1534 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + Y ERLE LGD L L + L N + EG L+ + LVS Sbjct: 1205 AITSSSTADVY--DMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLL 1262 Query: 86 QVARELDLASFI 97 + D+ I Sbjct: 1263 YCLSDTDIPKRI 1274 >gi|161579129|gb|ABX72052.1| Dicer-1 protein [Tribolium castaneum] Length = 157 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E+ IGY F +RS L +ALTH+S S ++ + Y+RLEFLGD +L LI+ L+ Sbjct: 63 YDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTR 122 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ + +A + R Sbjct: 123 MHSPGALTDLRSALVNNTIFASLAVRNGFHRYFR 156 >gi|80979117|gb|ABB54761.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1523 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + Y ERLE LGD L L + L N + EG L+ + LVS Sbjct: 1194 AITSSSTADVY--DMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLL 1251 Query: 86 QVARELDLASFI 97 + D+ I Sbjct: 1252 YCLSDTDIPKRI 1263 >gi|80979129|gb|ABB54767.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1523 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + Y ERLE LGD L L + L N + EG L+ + LVS Sbjct: 1194 AITSSSTADVY--DMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLL 1251 Query: 86 QVARELDLASFI 97 + D+ I Sbjct: 1252 YCLSDTDIPKRI 1263 >gi|80979121|gb|ABB54763.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1523 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + Y ERLE LGD L L + L N + EG L+ + LVS Sbjct: 1194 AITSSSTADVY--DMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLL 1251 Query: 86 QVARELDLASFI 97 + D+ I Sbjct: 1252 YCLSDTDIPKRI 1263 >gi|80979123|gb|ABB54764.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1523 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + Y ERLE LGD L L + L N + EG L+ + LVS Sbjct: 1194 AITSSSTADVY--DMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLL 1251 Query: 86 QVARELDLASFI 97 + D+ I Sbjct: 1252 YCLSDTDIPKRI 1263 Score = 35.8 bits (82), Expect = 4.9, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFVDKYWKQRALK-SGKFRRDAKT 159 B + DV+E+LIAA+YLD ++ + +K + + +A Sbjct: 1596 BFNMSTNVDVPKALGDVLEALIAAIYLDCRDLQRTWEVIFNLFKPELEEFTRNVPINAIR 1655 Query: 160 ELQEWAHAK 168 +L E HA Sbjct: 1656 QLTEHKHAN 1664 >gi|80979127|gb|ABB54766.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1523 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + Y ERLE LGD L L + L N + EG L+ + LVS Sbjct: 1194 AITSSSTADVY--DMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLL 1251 Query: 86 QVARELDLASFI 97 + D+ I Sbjct: 1252 YCLSDTDIPKRI 1263 >gi|80979125|gb|ABB54765.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ T + + L FI Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1523 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A+T SS + Y ERLE LGD L L + L N + EG L+ + LVS Sbjct: 1194 AITSSSTADVY--DMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLL 1251 Query: 86 QVARELDLASFI 97 + D+ I Sbjct: 1252 YCLSDTDIPKRI 1263 >gi|299747526|ref|XP_001837094.2| hypothetical protein CC1G_00230 [Coprinopsis cinerea okayama7#130] gi|298407559|gb|EAU84711.2| hypothetical protein CC1G_00230 [Coprinopsis cinerea okayama7#130] Length = 1499 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 92/256 (35%), Gaps = 43/256 (16%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E IG+ F LL + LTH+S+ S +YERLEF+GD IL ++ +F+ Sbjct: 1209 SIEAVEGIIGHRFQQPHLLAQILTHTSVHGSKVLTYERLEFIGDAILDFMVIRHIFDRER 1268 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----------------------- 101 + G L++ ++V+ T + V + + S Sbjct: 1269 TLSPGGLTMLKGAMVANSTLATVCILSGIYKHLVFGSYQLSSAIEDYAEAINERADKEYA 1328 Query: 102 ---DLRKDVCSFMTSI-----QADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRAL 148 + F I +DV+ES+I ALY+ E V + + + + Sbjct: 1329 LAEQENRMPGQFWPDIEPPKALSDVIESIIGALYISDNFCPVGTEAFFDKVLRPFFDKHI 1388 Query: 149 KSGKFRRDA-KTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDC 206 KT L E+ A ++ GP + + + + A D Sbjct: 1389 SLRTLTHHPTKT-LFEYIQAHGCQ----QLKLSKGPQQKGGKMSCEILVHETVCASASDV 1443 Query: 207 SKRAAEQVAAAEVLKR 222 S A + A+ L R Sbjct: 1444 SLSVAAREASTRALDR 1459 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 7/107 (6%) Query: 11 KRIGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 K + F + LL A T ++S + +YERLE LGD L L S ++F + Sbjct: 958 KELNMQFFDNAIDEELLYMATT--TVSAEMEHNYERLELLGDAFLKYLASVVVFVMNPTQ 1015 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 EG L V L+S + A ++ L ++I S S Sbjct: 1016 NEGSLHVARQRLISNKALLACATQVGLPAYI-CSKPFLLRGWRPWPS 1061 >gi|312213955|emb|CBX93957.1| similar to dicer-like protein 1 [Leptosphaeria maculans] Length = 1588 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 85/249 (34%), Gaps = 43/249 (17%) Query: 15 YAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 Y F L+ A TH S ++ + +Y+RLEFLGD +L + L+ + L+ Sbjct: 1291 YHFKYPRLVRSAFTHPSYAYMFEHIPNYQRLEFLGDSLLDMAFIMHLYYKYPDKDPQWLT 1350 Query: 73 VRFNSLVSAETCSQVARELDLASFIR----------------VSSDLRKDVC-------- 108 +VS + V +L ++ + R+ Sbjct: 1351 EHKTPMVSNKFLGAVCVKLGWHRHLKSNTAILSTQIRDYVLEIDEAEREANGAVDYWVNV 1410 Query: 109 SFMTSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQRALKS------GKFRRDAKTE 160 ADV+E+ +AAL++D + V +F D++ K T Sbjct: 1411 HEPPKCLADVIEAYVAALFVDSQFDFSVVQSFFDRHLKPFFADMTLDAYENFASNHPTTR 1470 Query: 161 LQEWAHAKFGVTPEYKV----TFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 L FG + ++++ T P +V I G G R A Sbjct: 1471 LSRLLSISFGCS-DWRMGARETDTVIPGKGKAIAAMVMIHGKVWFHSLGQGG--RYARLR 1527 Query: 215 AAAEVLKRE 223 A+ L+R Sbjct: 1528 ASHAALERL 1536 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 50/160 (31%), Gaps = 49/160 (30%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +L +ALT S +YERLEFLGD L + S +F Sbjct: 1066 PALALEALTKDSENTDEHEEEKINFKSGMGPNYERLEFLGDCFLKMATSLSVFVQQPEEN 1125 Query: 68 EGELSVRFNSLVSAETCSQVA-------------RELDLASFIRV--------------- 99 E E VR ++ + + A L+L ++R Sbjct: 1126 EFEYHVRRMLMLCNQNLMETAIGVKKVARPDGTEINLELPKYVRTEAFSRRTWYPEALKL 1185 Query: 100 --SSDLRKD-------VCSFMTSIQADVVESLIAALYLDG 130 + K + ADV E+ I A +++ Sbjct: 1186 IRGKGINKSEDDWLKLRHNLGDKSVADVCEAFIGAAFMEH 1225 >gi|225554674|gb|EEH02970.1| RNase3 domain-containing protein [Ajellomyces capsulatus G186AR] Length = 380 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 22/218 (10%) Query: 23 LEKA-LTHSSISHSY-----QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 L+ A TH + + +++YER+E LGD + ++ + L+++ F G LS Sbjct: 139 LQTAMFTHEGVHNPNTAPLPEKNYERMELLGDAYIEIIATRLVWDTFPRLPAGRLSQIRE 198 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIE 133 LV ET ++ L ++V ++R D T I+ D+ E+ +AA+ L G++ Sbjct: 199 LLVKNETLAEYTSLYGLDQKLQVPPNIR-DQAKTWTKIKGDLFEAYVAAVILSNREYGVQ 257 Query: 134 VAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD---PR 188 +A ++ + W + ++ K K +L + K Y + + H Sbjct: 258 LAEDWLTQLWIPKLEQIEKDKPMLRYKEDLAKLVMDKGIKL-SY-LDEKQSICHSGGLQT 315 Query: 189 FTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLK 221 F V V ++G G SK A AA + L+ Sbjct: 316 FFVGVYLTGWGHKNECLGSGTGFSKVIAGNEAARKALE 353 >gi|149234499|ref|XP_001523129.1| hypothetical protein LELG_05675 [Lodderomyces elongisporus NRRL YB-4239] gi|146453238|gb|EDK47494.1| hypothetical protein LELG_05675 [Lodderomyces elongisporus NRRL YB-4239] Length = 729 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 93/229 (40%), Gaps = 34/229 (14%) Query: 18 ANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 + +L EK H S ++ + ERLEF GD IL LI+ +++N F + E Sbjct: 357 RDSALYEKVFVHKSTVNNRTYLGSDALIHKHNERLEFYGDSILNNLITIIIYNKFPNNTE 416 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR-------VSSDLRKDVCSFMTSIQADVVES 121 GELS ++++ ++A + +R ++ + I ADV E+ Sbjct: 417 GELSKIRAAMINNRVLKEIAVDYGFDKKLRTRIDQDVLNLGEQ--------KIYADVFEA 468 Query: 122 LIAALYLDGGIEV--AGTFVDKYWKQRALKS------GKFRRDAKTELQEWAHAKFGVTP 173 I AL L+ ++ +++ + +R RDAK EL + P Sbjct: 469 YIGALGLERQFDLKEVKDWLEILYAKRIADLQREYIKDPLDRDAKAELYSMI-GTGDLHP 527 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV +G + V ++ +G+ +++ A AA LK Sbjct: 528 TYKV-HSAGDGIHTDYVVDCFMNREFLGRGIAVNQKEASLRAAMNALKN 575 Score = 40.1 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 27/87 (31%), Gaps = 10/87 (11%) Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 + + + D K L + G PEY V H TV + I L A Sbjct: 638 FPIKVDYDDELEHDVKNSLYALIGKETGTKPEYVVAATENNKH----TVQLRIRNLNVAT 693 Query: 203 GMDCSKRAAEQVAA------AEVLKRE 223 D SKR A A LK Sbjct: 694 ACDTSKRKAMSRCANAIWKDKAALKEL 720 >gi|168061351|ref|XP_001782653.1| predicted protein [Physcomitrella patens subsp. patens] gi|162665886|gb|EDQ52556.1| predicted protein [Physcomitrella patens subsp. patens] Length = 514 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 102/266 (38%), Gaps = 50/266 (18%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSI------------------------------ 32 L+ L +++G + +R LL + L H S Sbjct: 245 NLQLQILTEKLGCSIHSRELLLRILVHKSYYLSKMPQSVKEKKLRKPLMSWQRSGTVEDN 304 Query: 33 ----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ-V 87 + ++ E+ +L +GD +L L+ ST L + G ++ R + LV ++ Sbjct: 305 LMTFADAHAEARLKLALIGDTVLNLVASTHLIRQYPLLSTGSITERRSQLVCNSNLARAW 364 Query: 88 ARELDLASFIRVSSDLRKDVCSFMTSIQ-------ADVVESLIAALYLDGGIEVAGTFVD 140 LDL + L + + T++ AD +E+ I LY++ G+E FV+ Sbjct: 365 CTLLDLRELVLCDPLLSRSKKASATALLENQMKACADTLEAYIGGLYVEKGLESTLQFVE 424 Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH----DPRFTVVVEIS 196 L K R+ T L + P+YK+ G D+ + + V + Sbjct: 425 TR-LLPLLLLAKPTRNPVTILHDRCAMVLQEKPDYKLI---GVDNQNTPNESCRIRVYVK 480 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKR 222 G + G+ S+R A Q AA + L + Sbjct: 481 GFRLSTGIGKSQRLARQDAAEKALLK 506 >gi|124486133|ref|YP_001030749.1| hypothetical protein Mlab_1315 [Methanocorpusculum labreanum Z] gi|124363674|gb|ABN07482.1| ribonuclease III [Methanocorpusculum labreanum Z] Length = 145 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 5/146 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 + YS L +IGY FAN LL ALT ++ + + E+ + L LGD +L L++ L Sbjct: 1 MNYSDLYAKIGYTFANVDLLLHALTRTAYARENELSMSETMDSLAVLGDAVLDLIVIRRL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 +GE++ + LV+ ++A ++ L ++R + + A+ Sbjct: 61 IEEG-EFDKGEITRKKIDLVNMTVVRKLAEDIGLPEYMRWGKGELRMQIWTSGRVSAECF 119 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ 145 E+L+ A YLDGG+E + +D W Sbjct: 120 EALMGAAYLDGGVEASSAILDHVWMP 145 >gi|242807890|ref|XP_002485049.1| nucleolar RNAse III, putative [Talaromyces stipitatus ATCC 10500] gi|218715674|gb|EED15096.1| nucleolar RNAse III, putative [Talaromyces stipitatus ATCC 10500] Length = 371 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 87/225 (38%), Gaps = 32/225 (14%) Query: 23 LEKA-LTHSSI-----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 LE+A TH + +++Y+RLE LGD + ++ + L++ F G +S Sbjct: 123 LERAVFTHPGAPVNVAAEGMEQNYDRLEVLGDAYVEVIATRLIWEQFKDMPAGRMSQVRE 182 Query: 77 SLVSAETCSQVARELDLASFIRVSSDL-RKDVCSFMTSIQADVVESLIAALYLD---GGI 132 LV ET + A + + VS+ ++ I+ DV E+ +AA+ L G Sbjct: 183 DLVKNETLAGFATQYGFDKRVSVSALEDQRAQTKRWLKIRGDVFEAYVAAVILSNPLHGF 242 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTEL--QEWAHAK---FGVTPEYKVTFRSGPDHD- 186 ++ ++ + W R L + T L +E + G+ Y P Sbjct: 243 DIVEKWLRELWLPRLLHVPPAQ----TALKHKEQLAKRIMGKGIKLRYV---EEQPAKQL 295 Query: 187 ----PRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222 F + V ++G G +K A AA + L+ Sbjct: 296 EGGMQTFYIGVYLTGWGWQDQHLGSGSGLNKAIAGDEAAHKALEN 340 >gi|887620|emb|CAA90210.1| unknown [Saccharomyces cerevisiae] Length = 362 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 30/233 (12%) Query: 16 AFANRSLLEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++ + H S S ERLEFLGD IL +++ +++N F Sbjct: 95 EIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDY 154 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVS---SDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LVS E Q + + ++ + D + + + ADV E+ I Sbjct: 155 SEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYI 214 Query: 124 AALYLD---GGIEVAGTFVDKYWKQRALKS----------GKFRRDAKTELQEWAHAKFG 170 L D + ++ K K ++ K +AK +L Sbjct: 215 GGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLI-GYAS 273 Query: 171 VTPEYKVTFRSGP-DHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221 + Y + P DP V + G G+ + + A AA L+ Sbjct: 274 LRLHYVTVKK--PTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 324 >gi|195380844|ref|XP_002049171.1| GJ20897 [Drosophila virilis] gi|194143968|gb|EDW60364.1| GJ20897 [Drosophila virilis] Length = 1722 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 14/170 (8%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE+ +GY F +R+ L +ALTH S ++ Y+ LEF+GD IL LIS +F H Sbjct: 1433 INHQHLEQNLGYTFRDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFEH 1492 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G+L+ ++LV+ T + + FI + ++ + ++S Sbjct: 1493 KTRMTPGQLTDLRSALVNNTTLACICVRHRFHFFILAEN-----------ALLTESIQSF 1541 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 + + + V ++ ++ D + EL E A + Sbjct: 1542 VQ--FQESQNHRVTNHVRILMEESDVQPEPLDSDDELELAEAAQQQKLAI 1589 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 17/121 (14%) Query: 110 FMTSIQADVVESLIAALYLDG-GIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHA 167 + DV+E+LIAA+YLD + V + ++ L+ S + +L E Sbjct: 1607 DVPKALGDVLEALIAAVYLDCRDLTTTWQVVYRLFEPELLEFSRNVPLNPIRQLFE---- 1662 Query: 168 KFGVTPEYKVTFRSGP--DHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P + S P D++ V + G + + A+ AA L++ Sbjct: 1663 HKLAKPTF-----SPPIMDNNQV-MVTCQFICMDKTIKVYGFGNNGKQAKLSAAKHALQK 1716 Query: 223 E 223 Sbjct: 1717 L 1717 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 26/59 (44%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ER E LGD L L + L N + EG L+ ++LVS E D+ + I Sbjct: 1210 DMERFELLGDCFLKLSATLYLANKYPDWNEGILTQVKSTLVSNRNLLYCLSETDIPTRI 1268 >gi|328773741|gb|EGF83778.1| hypothetical protein BATDEDRAFT_85615 [Batrachochytrium dendrobatidis JAM81] Length = 1746 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 90/252 (35%), Gaps = 36/252 (14%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + +++++ Y F N LL AL + +ERLEFLGD I+ +L++ + Sbjct: 1476 LDQETVDHVQQKLSYNFHNPELLLIALMTPFY--FVKSKFERLEFLGDAIMDILVARYFY 1533 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS----------- 109 H+ A LS + V ++ L L + SS L + Sbjct: 1534 RHYKHADPCSLSKMIQATVCKPAFCKILVSLKLHEHLLQSSQLSQHSKEAIVLYANYIQN 1593 Query: 110 --------------FMTSIQADVVESLIAALYLDGGI--EVAGTFVDKY---WKQRALKS 150 + DV E ++AA+++D G E + Y + Q + Sbjct: 1594 SHSQHAFKQADKAIDGPKVLCDVFEVIVAAIFIDTGYNLERTRLVIFPYVHSFIQSNINL 1653 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT-VVVEISGLAPAQGMDCSKR 209 +L + ++ + + +++ S D F V G A + + Sbjct: 1654 ETITEPPIRQLFAFVQSQGFSSEKLELSDESNADG---FHKASVVFYGTVLATSQATTLK 1710 Query: 210 AAEQVAAAEVLK 221 A+Q A+ + L Sbjct: 1711 LAKQHASIKALN 1722 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 28/162 (17%) Query: 7 STLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +++ G L L A T + + + +YERLE LGD++L ++ L + + Sbjct: 1282 AEFDQKYGLYPKQIPLSTLMSAFT--TPAANSITNYERLETLGDKVLKFGVAHYLHSSYQ 1339 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK------------------- 105 S + G+LS + LVS + ++A++ L + + Sbjct: 1340 SYEVGQLSTILSGLVSNKNLFEIAQQHSLTGMLNTAPFQSNSWTPPSFCFETRIFVAPTA 1399 Query: 106 -----DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 D F Q+D +E+L+ A +L+ G+E A + + Sbjct: 1400 SVDCLDNRVFCGKKQSDFIEALLGAYFLECGVEAALHLMRTF 1441 >gi|322798617|gb|EFZ20221.1| hypothetical protein SINV_06556 [Solenopsis invicta] Length = 386 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 34/148 (22%) Query: 25 KALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +A TH S ++ E Y+RLEFLGD IL LI+ ++ + GEL+ ++LV+ T Sbjct: 150 QAFTHPSYTANGLTECYQRLEFLGDAILDFLITCYIYEKCGNLSPGELTDLRSALVNNIT 209 Query: 84 CSQVARELDLASFIR-------------------------------VSSDLRKDVCSF-- 110 + +A L + + + ++ + Sbjct: 210 FACLAVRYGLHIALLAYAPKLDEIIDRFVKFQEDRDYVVNDELLYVLIEEEECNLVEYVD 269 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTF 138 + + D+ ESLI A+YLD G ++ + Sbjct: 270 VPKVLGDLFESLIGAIYLDSGKDLVKIW 297 >gi|224613100|dbj|BAH24210.1| dsRNA-specific ribonuclease RNaseIII [Onion yellows phytoplasma] Length = 157 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 3/126 (2%) Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 + + A ++L +++ + K+ SI AD E+L A+YLD G A Sbjct: 1 RSLTIYAHNIELQNYLLLGKGE-KNKDFNAKSIIADTFEALFGAIYLDLGYLTAKKVFHN 59 Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 L + D KT+LQE ++ T +YK+ GP H F V + Sbjct: 60 IVLPH-LAKTIYIIDFKTQLQEIVQSEKK-TIQYKIVQEQGPAHSKNFVAEVYLEKNLLG 117 Query: 202 QGMDCS 207 G + Sbjct: 118 TGEGST 123 >gi|116196272|ref|XP_001223948.1| hypothetical protein CHGG_04734 [Chaetomium globosum CBS 148.51] gi|88180647|gb|EAQ88115.1| hypothetical protein CHGG_04734 [Chaetomium globosum CBS 148.51] Length = 1476 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 88/233 (37%), Gaps = 28/233 (12%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E R+GYAF + LL A H + + SY+RLEFLGD +L + LF+ F Sbjct: 1199 ARFEARMGYAFTHPRLLRSAFQHPTYPSVYEKLPSYQRLEFLGDALLDMASVEFLFHRFP 1258 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A + + + +L SF R D CS DVVE+ + Sbjct: 1259 GADPQS-----KTPCNRHATTPSPGDLPAESFAR---DFWV-RCSRPPKCLPDVVEAYVG 1309 Query: 125 ALYLDGGIEVAG------TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 A+++D + A V +++ L + T L + E+++ Sbjct: 1310 AVFVDSRYDFARVRAFFADHVRPFFEDMRLYDAFANKHPVTFLAGIMQGRMRCA-EWRLL 1368 Query: 179 FRSGPD----------HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + P P+ V + GL A + S R + AA + ++ Sbjct: 1369 VKDLPPVVGAGAGTELETPQVVCAVRVHGLTLAHAVAASGRYGKIAAAKKAIQ 1421 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 47/139 (33%), Gaps = 30/139 (21%) Query: 20 RSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +A T H S +YERLEFLGD L + + +F Sbjct: 1004 PDLALEAFTKDSDNSGEHDAEQISFQSGMGNNYERLEFLGDCFLKMATTISIFTLIPDKA 1063 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDLRKDVCSFM- 111 E E V L+ A E+ L IR + RKD+ Sbjct: 1064 EFEYHVERMLLICNRNLFNNALEVKLEEHIRSMAFDRRSWYPEGLTLKKGKRKDLTRQHV 1123 Query: 112 --TSIQADVVESLIAALYL 128 ADV E+LI A YL Sbjct: 1124 LADKTIADVCEALIGAAYL 1142 >gi|170099920|ref|XP_001881178.1| predicted protein [Laccaria bicolor S238N-H82] gi|164643857|gb|EDR08108.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1469 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 60/296 (20%), Positives = 102/296 (34%), Gaps = 88/296 (29%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 + +E +GY F ++ LL +ALTH+S SYER+EFLGD IL ++++ L+ Sbjct: 1154 QLVDVESMLGYTFNHKLLLIEALTHASYQQDQYTSSSYERMEFLGDSILDMIVTDYLYRA 1213 Query: 63 F-DSAKEGELSVRFNSLVSAETCSQVA--------------------------------- 88 G + +R +++V+A + + Sbjct: 1214 PGKEYSPGHMHLRKSAVVNAHFLAFICLRTCLHFDASMPRPSPDSQGDQGPVKIELAPDS 1273 Query: 89 RELDLASFIRVSS-----DLRKDVCSFM--------------------------TSIQAD 117 +E+ L + SS D F +D Sbjct: 1274 QEIYLWQCLLHSSPRVLDDQSNTFIRFRKCKAVIEKALEKGIIFPWAALTRLQAPKFLSD 1333 Query: 118 VVESLIAALYLD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGV 171 +VESLI A++LD G ++ + K +R ++ + L +WA +K Sbjct: 1334 MVESLIGAIFLDSNGDMDCVKGVLRKTGIIQILERIVRDDVDILHPVSRLSDWA-SKNDK 1392 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQ-----VAAAEVL 220 EYK G V I +G + + A Q AA + + Sbjct: 1393 EIEYKFEKSKGN-------VSCIILVNGKEEIRETAVYRGTASQDEVKFAAAEKAI 1441 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 37/155 (23%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LL A+T S + +++Y+RLE LGD +L + L + + EG L+ + + VS Sbjct: 969 QLLMVAITAPS--SNERKNYQRLETLGDTVLKFVCGIQLLSEYPLWHEGYLTRKKDHAVS 1026 Query: 81 AETCSQVARELDLASFI----RVSSDLRKDVCSFMT------------------------ 112 ++ +L +I + + S Sbjct: 1027 NVRLAKENVARELYRWIIRDMLLGKKWKPHYLSKKDAETTPEPDKMTVEEVNTKKKKKKG 1086 Query: 113 -------SIQADVVESLIAALYLDGGIEVAGTFVD 140 + ADVVES+I A YL GG ++ + Sbjct: 1087 KSQSLSTKVLADVVESIIGAAYLHGGFDLGYECIK 1121 >gi|323347050|gb|EGA81326.1| Rnt1p [Saccharomyces cerevisiae Lalvin QA23] Length = 441 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 30/233 (12%) Query: 16 AFANRSLLEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++ + H S S ERLEFLGD IL +++ +++N F Sbjct: 204 EIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDY 263 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVS---SDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LVS E Q + + ++ + D + + + ADV E+ I Sbjct: 264 SEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYI 323 Query: 124 AALYLD---GGIEVAGTFVDKYWKQRALKS----------GKFRRDAKTELQEWAHAKFG 170 L D + ++ K K ++ K +AK +L Sbjct: 324 GGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLI-GYAS 382 Query: 171 VTPEYKVTFRSGP-DHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221 + Y + P DP V + G G+ + + A AA L+ Sbjct: 383 LRLHYVTVKK--PTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 433 >gi|212537957|ref|XP_002149134.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224] gi|210068876|gb|EEA22967.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224] Length = 296 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 88/225 (39%), Gaps = 32/225 (14%) Query: 23 LEKA-LTHSS-----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 LE+A TH +++Y+RLE LGD + ++ + L+++HF G +S Sbjct: 47 LERAVFTHPGTPVHIAPEGMEQNYDRLEVLGDAYVEVIATRLIWDHFKDMPAGRMSQVRE 106 Query: 77 SLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTSIQADVVESLIAALYL---DGGI 132 LV ET + A + + VS + +K I+ DV E+ +AA+ L D G Sbjct: 107 DLVKNETLAGFASQYGFDKRVSVSAPEEQKAQPKRWLKIRGDVFEAYVAAVVLSNPDHGF 166 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQ--EWAHAK---FGVTPEYKVTFRSGPDHD- 186 ++ ++ + W R + T L+ E + G+ Y P Sbjct: 167 DIVEQWLRELWLPRLSHVQPVQ----TVLRHKEQLAKRVMSKGIKLRYV---EEQPAKQL 219 Query: 187 ----PRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222 + + V ++G G +K A AA + L+ Sbjct: 220 DGGMQTYYIGVYLTGWGWHDQHLGSGSGLNKAIAGDEAANKALQN 264 >gi|154300125|ref|XP_001550479.1| hypothetical protein BC1G_10438 [Botryotinia fuckeliana B05.10] gi|150856727|gb|EDN31919.1| hypothetical protein BC1G_10438 [Botryotinia fuckeliana B05.10] Length = 1398 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 59/294 (20%), Positives = 106/294 (36%), Gaps = 82/294 (27%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ + Y F +SLL +A+TH S + Q S ERLEFLGD IL +I T +++H Sbjct: 1090 VEQILAYTFTKKSLLVEAMTHPSYTSGTQ-SLERLEFLGDSILDNIIVTAMWSHSTPLSH 1148 Query: 69 GELSVRFNSLVSAETCSQVARELDLAS--------------------------FIRVS-- 100 + + ++LV+A+ + + E+ + F+R S Sbjct: 1149 FHMHLLRSALVNADFLAFLCMEMSIDQNVTNLTEGKNHRIHETHSRRRVSLVSFLRHSSV 1208 Query: 101 ------SDLRKDVCSFMTSIQ-----------------------ADVVESLIAALYLDGG 131 + I +D++ESL+ A+++D G Sbjct: 1209 RLSIYQKEALSRHAELRDQILEAIYTGDTFPWALLSRLDARKFFSDMIESLLGAVWIDSG 1268 Query: 132 -IEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS----- 181 +EV +++ + +R LK G K EL A ++ Y + Sbjct: 1269 SMEVCTQLIERMGVLRYMRRILKDGVRIMHPKEELGIVADSEN---VRYVLRREKMGGDA 1325 Query: 182 -------GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV-AAAEV---LKREG 224 + + V + G + +++ Q AA + LK G Sbjct: 1326 TEVNADADEEVRTEYRCTVFVGGEEIVEVRGGARKEEIQARAAEQAVRILKARG 1379 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 28/151 (18%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 +++SL++ A+TH+S S +Y+RLEFLGD IL L S L EG LS Sbjct: 963 EISDQSLIQTAITHASYS--LDSNYQRLEFLGDSILKLCTSVQLVAEHLDWHEGYLSAMK 1020 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT------------------SIQAD 117 + +VS S+ A E+ L +I + I +D Sbjct: 1021 DRIVSNSRSSRAAAEVGLDEYIMTKK---FTGAKWRPMYVDDLVVTEQKTREMSSKILSD 1077 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 VVE+LI A + + + +++L Sbjct: 1078 VVEALIGA-----SLRPVEQILAYTFTKKSL 1103 >gi|6323895|ref|NP_013966.1| Rnt1p [Saccharomyces cerevisiae S288c] gi|2500557|sp|Q02555|RNT1_YEAST RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|1185416|gb|AAB04172.1| Rnt1p [Saccharomyces cerevisiae] gi|151945944|gb|EDN64176.1| conserved protein [Saccharomyces cerevisiae YJM789] gi|190408465|gb|EDV11730.1| ribonuclease III [Saccharomyces cerevisiae RM11-1a] gi|256271587|gb|EEU06629.1| Rnt1p [Saccharomyces cerevisiae JAY291] gi|285814244|tpg|DAA10139.1| TPA: Rnt1p [Saccharomyces cerevisiae S288c] gi|323303453|gb|EGA57248.1| Rnt1p [Saccharomyces cerevisiae FostersB] gi|323332152|gb|EGA73563.1| Rnt1p [Saccharomyces cerevisiae AWRI796] Length = 471 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 30/233 (12%) Query: 16 AFANRSLLEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++ + H S S ERLEFLGD IL +++ +++N F Sbjct: 204 EIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDY 263 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVS---SDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LVS E Q + + ++ + D + + + ADV E+ I Sbjct: 264 SEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYI 323 Query: 124 AALYLD---GGIEVAGTFVDKYWKQRALKS----------GKFRRDAKTELQEWAHAKFG 170 L D + ++ K K ++ K +AK +L Sbjct: 324 GGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLI-GYAS 382 Query: 171 VTPEYKVTFRSGP-DHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221 + Y + P DP V + G G+ + + A AA L+ Sbjct: 383 LRLHYVTVKK--PTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 433 >gi|46132992|ref|XP_389201.1| hypothetical protein FG09025.1 [Gibberella zeae PH-1] Length = 1495 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 70/267 (26%) Query: 14 GYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 GY F + LL+ A TH S ++S +Y+RLEFLGD ++ + I L+ +F A L+ Sbjct: 1204 GYHFKSAPLLQSAFTHPSYAYSGNVPNYQRLEFLGDALIDMTIVEYLYRNFPLADPQWLT 1263 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------------------- 110 ++ S + + +L+L + ++ Sbjct: 1264 EHKMAMASNQFLGCLCVKLNLHHHLLFNTSQFISKIRDYVAELELAEETARQEAEEDGTP 1323 Query: 111 -----------MTSIQADVVESLIAALYLDGGIEVA------GTFVDKYWKQRALKSGKF 153 AD +E+L+ A+++D + + F+ Y+K +L Sbjct: 1324 MRMDFWLNATTPPKAYADSIEALMGAMFVDSEFDYSVVEDFFTKFIFPYFKDMSLYDTFA 1383 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD-------------------HDPRFTVVVE 194 + T L + + G ++ PD H+ T V Sbjct: 1384 NKHPYTFLTKKMQQEIGCMKFCMISDTRVPDAERGMEVMKEYDIYSAFQVHERVITCHVS 1443 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLK 221 SG + A AA L+ Sbjct: 1444 KSGR-YG-------KIA---AAKGALE 1459 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 46/140 (32%), Gaps = 29/140 (20%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +L +A+T S +YERLEFLGD L + + +F + Sbjct: 1006 PALALEAMTKDSDNTEDHGKQQINFQAGMGSNYERLEFLGDSFLKMATTISIFVLKPKSN 1065 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-----------------VCSF 110 E V L+ A + L +IR + R+ Sbjct: 1066 ECLYHVERMLLICNNNLFNTAVDCKLPEYIRSLAFDRRTWYPDLTLRKGKAFKATARQRL 1125 Query: 111 MTSIQADVVESLIAALYLDG 130 ADV E+LI A YL Sbjct: 1126 ADKSIADVCEALIGAAYLSS 1145 >gi|223944141|gb|ACN26154.1| unknown [Zea mays] Length = 206 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 2/101 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58 MSA + +E +GY F ++SL+E ALTH S + ++YERLE+LGD +L L+S Sbjct: 43 MSAKDVTAIEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSRE 102 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 +F + + + G L+ + V E ++VA L F+R Sbjct: 103 VFRTYRTLQPGPLTRLRAANVDTEKLARVAVHRGLHRFLRH 143 >gi|195425457|ref|XP_002061021.1| GK10670 [Drosophila willistoni] gi|194157106|gb|EDW72007.1| GK10670 [Drosophila willistoni] Length = 1720 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + Y LE+ +GY F +R+ L +ALTH S ++ Y+ LEF+GD IL LIS +F Sbjct: 1436 INYHYLERNLGYTFKDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFER 1495 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G+L+ ++LV+ T + + FI Sbjct: 1496 NIRMNPGQLTDLRSALVNNTTLACICVRHRFHLFIL 1531 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 5/97 (5%) Query: 4 LRYSTLEKRI---GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + S L+K I A +S A+T S S + ERLE LGD L + + L Sbjct: 1178 EQLSVLQKTISNEHITPAEQSEFLTAITSSGCSDVF--DMERLELLGDSFLKMSATLYLS 1235 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 + + EG L+ ++LVS E D+ S I Sbjct: 1236 SIHSNWNEGVLTQIKSTLVSNRNLLYCMNETDIPSRI 1272 >gi|195023643|ref|XP_001985724.1| GH20958 [Drosophila grimshawi] gi|193901724|gb|EDW00591.1| GH20958 [Drosophila grimshawi] Length = 1713 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R+ L +ALTH S ++ Y+ LEF+GD IL LIS +F H Sbjct: 1421 INHSALEHNLGYTFRDRAYLLQALTHPSNPTNRLTGCYQELEFVGDAILDFLISAYIFEH 1480 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G+L+ ++LV+ T + + + FI Sbjct: 1481 KTRMTPGQLTDLRSALVNNTTLACICVRHRIHFFIL 1516 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 27/59 (45%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ER E LGD L L + L + + EG L+ ++LVS R+ D+ S I Sbjct: 1198 DMERFELLGDCFLKLSATLYLASKYPKWNEGTLTQVKSTLVSNRNLLYCIRDTDIPSRI 1256 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 15/119 (12%) Query: 110 FMTSIQADVVESLIAALYLDG-GIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHA 167 + DV+E+LIAA+YLD + V K ++ L+ S + +L Sbjct: 1598 DVPKTLGDVLEALIAAIYLDCRDLNTTWQVVYKLFEPELLEFSRNVPLNPIRQLN----D 1653 Query: 168 KFGVTPEYKVTFRSGPDHDP-RFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P Y S P D + V + G + + A+ AA L++ Sbjct: 1654 HKSAKPIY-----SAPVTDKNQVMVTCQFICMEKTIKVYGFGSNGKQAKLSAAKHALQK 1707 >gi|302308935|ref|NP_986085.2| AFR538Cp [Ashbya gossypii ATCC 10895] gi|299790864|gb|AAS53909.2| AFR538Cp [Ashbya gossypii ATCC 10895] Length = 485 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 90/238 (37%), Gaps = 35/238 (14%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++ + TH S+++ ERLEFLGD IL ++ +++N F Sbjct: 225 EIKDPAIRARVFTHRSLTNDKLYLDEAQMINSHNERLEFLGDSILNTTMTMIIYNKFPGF 284 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVS----SDLRKDVCSFMTSIQADVVESL 122 EG LS L++ + + + L S +R + + +V + + ADV E+ Sbjct: 285 NEGRLSQLRTKLINNDRLKEWSFMYQLPSKLRTNIEMFNGTTHEVSNGKLKLYADVFEAY 344 Query: 123 IAALYLDGG---IEVAGTFVDKY--------WKQRALKSGKFRRDA---KT--ELQEWAH 166 I L + G + ++ K + + D KT L +A Sbjct: 345 IGGLVEEDGKKNLPRIRKWLAKLAEPVIQEEIENDVVLENTDEVDVNAKKTLYSLIGYAA 404 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P ++ T ++P V + GL G + + A AA EVLK + Sbjct: 405 LNLHYYPVHRPTN-----NEPYAIVECRVKDGLTLGTGRGKNVKIAGMRAAQEVLKNK 457 >gi|226286856|gb|EEH42369.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18] Length = 1450 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 93/264 (35%), Gaps = 71/264 (26%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY F + L +A TH S + SY+RLEFLGD IL +I +FN + Sbjct: 1128 FRDIESLVGYIFNKKVFLAQAFTHPS-NPGSTMSYQRLEFLGDSILDHIIVDHIFNSPRN 1186 Query: 66 AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99 + ++ + SL +A+ + + R++ L ++R Sbjct: 1187 FQHVDMHLMRASLANADFLAFLCIGMTTEEERGEIVEASRNGTFTRMTTRKISLWQYMRH 1246 Query: 100 SSDLRKDVCSFMT--------------------------------SIQADVVESLIAALY 127 + V T +D++ES++ A++ Sbjct: 1247 GTSWELTVSQQQTVNQYQALKADITKALYESDTYPWALLSRLRAQKFFSDLIESVLGAIF 1306 Query: 128 LD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK---VT 178 +D G ++ F+++ + +R L+ K L E + Y+ V Sbjct: 1307 IDSHGSLDACAAFLERIGLMNFLRRILQDEIDIMHPKQRLGEMV---GQMQVRYETVHVV 1363 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ 202 G D +T V + + Sbjct: 1364 EEEGGDALGHWTCKVFVDDECVFE 1387 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 22/147 (14%) Query: 17 FANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 F + +L+ AL + +E +Y+R+EFLGD IL S L EG LS Sbjct: 957 FTDLNLVITAL----CAPDAREATNYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNA 1012 Query: 75 FNSLVSAETCSQVARELDLASFIRV--------------SSDLRKDVCSF--MTSIQADV 118 + +VS + S A E L FI + + +D+ T ADV Sbjct: 1013 KDEVVSNKRLSYAAIETGLDKFIFMDIFTGVKWRPRYNKAHVEEQDIPRREMSTKTLADV 1072 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQ 145 +E+L+ A +DGG + + + Sbjct: 1073 IEALLGAATIDGGRTKVEKCLKIFLPE 1099 >gi|212537955|ref|XP_002149133.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224] gi|210068875|gb|EEA22966.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224] Length = 374 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 88/225 (39%), Gaps = 32/225 (14%) Query: 23 LEKA-LTHSS-----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 LE+A TH +++Y+RLE LGD + ++ + L+++HF G +S Sbjct: 125 LERAVFTHPGTPVHIAPEGMEQNYDRLEVLGDAYVEVIATRLIWDHFKDMPAGRMSQVRE 184 Query: 77 SLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTSIQADVVESLIAALYL---DGGI 132 LV ET + A + + VS + +K I+ DV E+ +AA+ L D G Sbjct: 185 DLVKNETLAGFASQYGFDKRVSVSAPEEQKAQPKRWLKIRGDVFEAYVAAVVLSNPDHGF 244 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQ--EWAHAK---FGVTPEYKVTFRSGPDHD- 186 ++ ++ + W R + T L+ E + G+ Y P Sbjct: 245 DIVEQWLRELWLPRLSHVQPVQ----TVLRHKEQLAKRVMSKGIKLRYV---EEQPAKQL 297 Query: 187 ----PRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222 + + V ++G G +K A AA + L+ Sbjct: 298 DGGMQTYYIGVYLTGWGWHDQHLGSGSGLNKAIAGDEAANKALQN 342 >gi|259148825|emb|CAY82070.1| Rnt1p [Saccharomyces cerevisiae EC1118] Length = 471 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 83/233 (35%), Gaps = 30/233 (12%) Query: 16 AFANRSLLEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++ + H S S ERLEFLGD IL +++ +++N F Sbjct: 204 EIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDY 263 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVS---SDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LVS E Q + + ++ + D + + + ADV E+ I Sbjct: 264 SEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYI 323 Query: 124 AALYLD---GGIEVAGTFVDKYWKQRALKS----------GKFRRDAKTELQEWAHAKFG 170 L D + ++ K K ++ K +AK +L Sbjct: 324 GGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLI-GYAS 382 Query: 171 VTPEYKVTFRSGP-DHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221 + Y P DP V + G G+ + + A AA L+ Sbjct: 383 LRLHYVTVKN--PTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 433 >gi|302422698|ref|XP_003009179.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102] gi|261352325|gb|EEY14753.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102] Length = 1510 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 47/264 (17%), Positives = 84/264 (31%), Gaps = 51/264 (19%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 E AF + +LL A H S ++ +Y+RLEFLGD +L ++ LF F A Sbjct: 1223 EGNFDMAFKSPALLRSAFKHPSYPRQFESVPNYQRLEFLGDALLDMVCVDFLFRKFPDAD 1282 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD--------------------- 106 L+ ++VS ++ EL + S + + Sbjct: 1283 PQWLTEHKMAMVSNHFLGSLSVELGFYRRVLHFSGVMANQIKDYVDALTHARQEAEAAAQ 1342 Query: 107 -----------VCSFMTSIQADVVESLIAALYLDGGIEVA------GTFVDKYWKQRALK 149 +DVVE+ I A+++D G + + ++ AL Sbjct: 1343 ISGVISQDYWLNVQHPPKFLSDVVEAYIGAIFVDSGYNYSQVQAFFEKHIRPFFADMALY 1402 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH----------DPRFTVVVEISGLA 199 T L FG ++++ P + + G Sbjct: 1403 DSFASSQPVTTLARMMQQDFGCQ-DWRLLVSELPPSCEDGGATAITETEVICGFMVHGRI 1461 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 S + A+ AA +++ Sbjct: 1462 LLHAKSSSGQYAKVGAAKRAVEKL 1485 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 57/150 (38%), Gaps = 34/150 (22%) Query: 20 RSLLEKALTHSSISHSYQE------------SYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +A+T S + Q+ +YERLEFLGD L + + LF + Sbjct: 1080 PDLALEAMTKDSSNSDEQDQEKIDFQAGMGNNYERLEFLGDCFLKMATTIALFTRIPDSN 1139 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVS--------------SDLRKDVCSFMTS 113 E E V L+ + VA + +L +IR + S Sbjct: 1140 EFEYHVERMLLICNQNLFNVALKKNLQEYIRSKQFDRRSWYPQGLKQKAGKAQGAQNSHS 1199 Query: 114 I----QADVVESLIAALYL----DGGIEVA 135 + ADV E++I A YL +G ++A Sbjct: 1200 LADKSIADVCEAMIGASYLSYADEGNFDMA 1229 >gi|255933596|ref|XP_002558177.1| Pc12g13700 [Penicillium chrysogenum Wisconsin 54-1255] gi|211582796|emb|CAP80997.1| Pc12g13700 [Penicillium chrysogenum Wisconsin 54-1255] Length = 1393 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 102/287 (35%), Gaps = 68/287 (23%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLF 60 + + + L IGY F + +LL +ALTH+S + +SY+RLEFLGD +L +++ ++ Sbjct: 1102 NLINHHRLAGLIGYTFNDPALLTEALTHASCEYDTSTQSYQRLEFLGDAVLDMVVMAVIA 1161 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVAREL--------------------------DLA 94 H +G +++ +S+V+A + EL L Sbjct: 1162 GHPVEMDQGPMTLLKHSVVNANLLAFFCMELCAPDEPSHVTQFTNGGINLVPRYDQIHLW 1221 Query: 95 SFIR-VSSD---------LRKDVCS---------------------FMTSIQADVVESLI 123 F+R + R +D++ES++ Sbjct: 1222 RFLRSHGPNIKSAQEACLERHQGLRAEIRDALENGTQYPWELFARLRADKFLSDIIESVL 1281 Query: 124 AALYLDGG--IEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 A+++D G ++V FV++ ++ QR + G + Q + + K Sbjct: 1282 GAIFIDCGGDLDVCYAFVERIGLVWYIQRVIADGVNVVHPRNIAQNMVKGAGTLVFKRKR 1341 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLKRE 223 G + ++ A S AE A ++ Sbjct: 1342 VESGGVA---TYRCSAIVNKTEIALVEGCASAEEAEVKVANVAIEHL 1385 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 17/150 (11%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 G + + + A+ S+ +Y+R EF GD +L +S LF + EG LS Sbjct: 937 GVGIKDIAHVITAI--SAPIAQASTNYQRYEFFGDSVLKFTVSCQLFFRNGNWHEGYLSE 994 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM--TSIQADV 118 + L+ ++ A +L + SF+ S L T + ADV Sbjct: 995 SRDKLIQNSRLARAALDLGIDSFVLTSRFTPRKWTTPLIRNKLEPSTAKRNISTKVLADV 1054 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 VESLI A Y+DGGI A + ++ + L Sbjct: 1055 VESLIGAAYVDGGIREAQACLHRFLPEINL 1084 >gi|189199432|ref|XP_001936053.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983152|gb|EDU48640.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 1439 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 71/287 (24%), Positives = 113/287 (39%), Gaps = 77/287 (26%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +EK +GY F N++LL +ALTH + + SYER EFLGD +L ++S LF H Sbjct: 1121 MSLGLVEKLLGYKFTNKALLLEALTHVTFRGLNTNCSYERHEFLGDAVLDYIVSRRLFAH 1180 Query: 63 FDSAKEGELSVRFNSLVSAETCSQ------VAREL-------------DLASFIR----- 98 ++ ++V+A + V EL L F+R Sbjct: 1181 KPELSHRKMHGIRTAMVNASFLAYSMFETTVTDELTNKDTLEPEVHHRALWQFLRSTSNA 1240 Query: 99 ------------------VSSDLRKDVC--------SFMTSIQADVVESLIAALYLD--G 130 +++ L+ D + +D+VES+I ALY+D G Sbjct: 1241 LVASRIVATQQHAEAREIIATGLKHDSRFPWHALSLTDPPKYLSDIVESVIGALYIDSHG 1300 Query: 131 GIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY-KVTF------ 179 I + FV + +R L+ G K L A + +Y +VT Sbjct: 1301 SIAICEEFVRRLGIISCLERILRDGVDCLHPKERLGILA---VDKSVKYARVTSNLKSEG 1357 Query: 180 --RSGPDHDPRFTVVVEISGLAPA---QGMDCSKR-AAEQVAAAEVL 220 SG + + V V+I G +G+ KR AE +AA + + Sbjct: 1358 ARDSGVP-EKGYKVQVKIGGKDVGGVVEGV---KRLQAETIAAWKAI 1400 Score = 82.0 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 56/158 (35%), Gaps = 25/158 (15%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + +L ALT SS + Y+RLEFLGD IL + S L EG L+ + L Sbjct: 956 HLPILVTALT-SSALNEGN-DYQRLEFLGDCILKFIASLHLMAANLQMPEGMLTGKKGKL 1013 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMT--------------------SIQADV 118 VS ++ L +I R + + ADV Sbjct: 1014 VSNGYLARATLAAGLDQYIFHK---RFTGAKWRPRYISQVLAESTLPEKQEKSSKLIADV 1070 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156 +ESLI A Y+ GG A V +D Sbjct: 1071 IESLIGASYIIGGFPKAFACVQTLLPLERWTPLSEAKD 1108 >gi|154484153|ref|ZP_02026601.1| hypothetical protein EUBVEN_01864 [Eubacterium ventriosum ATCC 27560] gi|149735195|gb|EDM51081.1| hypothetical protein EUBVEN_01864 [Eubacterium ventriosum ATCC 27560] Length = 379 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 30/211 (14%) Query: 1 MSALRYST-------LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILG 52 MS L + +E++IGY F NR LL +A S S E+ E LEF+GD+ L Sbjct: 1 MSELSFGEAENWVDFVERQIGYKFVNRDLLVQAFVRKSYSMENGGENNEVLEFIGDKALD 60 Query: 53 LLISTLLFNHFDSA------------------KEGELSVRFNSLVSAETCSQVARELDLA 94 L + L + + EG+L+ + LV E S EL LA Sbjct: 61 LSVVKTLTDKYGHMISDEPDYEDEDDEFYCEYSEGKLTHLKSLLVRKEYLSARIDELKLA 120 Query: 95 SFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQR-ALKSG 151 F+ +S K+ TS++ D+ E++I A+ LD + V + L + Sbjct: 121 PFLIMSKGDLKNNIDKNTSVKEDLFEAIIGAVTLDTLWDFDKIQDVVGVMLRPELILDAD 180 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + +Q+W + P++ + G Sbjct: 181 VTDDNYIKLIQDWESKHYNDLPKF-LYKERG 210 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 4/92 (4%) Query: 133 EVAGTFVDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 E A F+++ W + + ++ ++L+ A + PEY+ + + +P + Sbjct: 281 ECAYKFLEEEDLLWTIKDEIENPNKAESISQLEILARRGYFSMPEYEYIEQYDENGNPIW 340 Query: 190 TVVVEISGLA-PAQGMDCSKRAAEQVAAAEVL 220 V I SK+ A++ AA ++L Sbjct: 341 NVECHIEEEKYYFDAEASSKKVAKKQAAYDML 372 >gi|261190414|ref|XP_002621616.1| RNase3 domain-containing protein [Ajellomyces dermatitidis SLH14081] gi|239591039|gb|EEQ73620.1| RNase3 domain-containing protein [Ajellomyces dermatitidis SLH14081] gi|239614955|gb|EEQ91942.1| RNase3 domain-containing protein [Ajellomyces dermatitidis ER-3] gi|327356568|gb|EGE85425.1| hypothetical protein BDDG_08370 [Ajellomyces dermatitidis ATCC 18188] Length = 382 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 19/221 (8%) Query: 19 NRSLLEKALTHSSISHSY-----QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 ++ L LTH I + +++YER+E LGD + ++ + L+++ F G LS Sbjct: 136 DKQLHTAMLTHEGIHNPNTASLSEKNYERMELLGDAYIEIMATRLVWDTFPRLPAGRLSQ 195 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DG 130 LV ET ++ L + V ++R T ++ D+ E+ +AA+ L D Sbjct: 196 IRELLVKNETLAEYTTLYGLDQKLMVPPEIRNQ-AKTWTKVKGDLFEAYVAAVILSNRDN 254 Query: 131 GIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEY--KVTFRSGPDHD 186 G+++ ++ + W + ++ K K EL + K G+ Y + + P Sbjct: 255 GVQLVEDWLTQLWIPKLEQIEKEKPVLRYKEELAKLIMDK-GIRLSYLDEKKAINHPGGL 313 Query: 187 PRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222 F + V ++G GM SK A AA + L+ Sbjct: 314 QTFFIGVYLTGWGHKKECLGSGMGLSKVIAGNEAARKALEN 354 >gi|169768544|ref|XP_001818742.1| ATP-dependent helicase dcl2 [Aspergillus oryzae RIB40] gi|121804870|sp|Q2UNX5|DCL2_ASPOR RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl2; Includes: RecName: Full=ATP-dependent helicase dcl2 gi|83766600|dbj|BAE56740.1| unnamed protein product [Aspergillus oryzae] Length = 1377 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 57/281 (20%), Positives = 104/281 (37%), Gaps = 75/281 (26%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L++ +GY F N LL +ALTH S H +SY+RLEFLGD IL ++I ++F + + Sbjct: 1095 LQRHLGYTFKNEDLLIEALTHPSCQHDQTTQSYQRLEFLGDAILDMVIVPIIFQYSNKIS 1154 Query: 68 EGELSVRFNSLVSAETCSQVAREL--------------------------DLASFIRVSS 101 G++++ +++V+A E +L F+R +S Sbjct: 1155 PGDMTLIKHAVVNANLLGFFCMEFSIEQDKTKVEKTPDGRFAVKSETQHVELWRFMRFNS 1214 Query: 102 DLRKD--------VCSFMTSIQ-----------------------ADVVESLIAALYLDG 130 + I +D+VES++ A+Y+D Sbjct: 1215 LDLQTSRDAALDRHRRLRNKILTSLYHGPSYPWQSLSQLYADKFFSDIVESVLGAIYVDS 1274 Query: 131 G--IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 G + F+++ + +R L G + Q + +V+ G Sbjct: 1275 GGDLSACERFLEQIGLLSYVRRVLLDGINVTHPRNIAQRLSKGDALFNLR-RVSDEKGRS 1333 Query: 185 HDPRFTVVVEISG--LAPAQG--MDCSKRAAEQVAAAEVLK 221 + V ++ + +G AE AA E ++ Sbjct: 1334 ---MYRCTVTMNDAQIVLVEGCQCGE---EAEVRAANETIE 1368 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 17/135 (12%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 FA+ + A+ S +Y+R EFLGD IL ++S LF + EG L+ Sbjct: 925 FADIQHVITAIMAPSA--QGVTNYQRYEFLGDSILKYIVSCQLFFQNLNWPEGFLTEGRT 982 Query: 77 SLVSAETCSQVARELDLASFIRVSS---------------DLRKDVCSFMTSIQADVVES 121 ++V ++ A + L SFI + + ADV+E+ Sbjct: 983 TIVQNPRLTRAALDAGLDSFIITKALTPRRWIAPLISTRVGAAPVKRQMSAKVLADVIEA 1042 Query: 122 LIAALYLDGGIEVAG 136 LI A YLDGG A Sbjct: 1043 LIGAAYLDGGHSKAQ 1057 >gi|297794783|ref|XP_002865276.1| hypothetical protein ARALYDRAFT_494464 [Arabidopsis lyrata subsp. lyrata] gi|297311111|gb|EFH41535.1| hypothetical protein ARALYDRAFT_494464 [Arabidopsis lyrata subsp. lyrata] Length = 892 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 95/248 (38%), Gaps = 35/248 (14%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + +EK + Y+F N++LL + LTH + ++RL F+G+ L L + L+ Sbjct: 345 MDSDSVEAVEKILNYSFVNKNLLNELLTH-----NTSPLFQRLMFVGEPALSLAFTKHLY 399 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLR 104 + + +LS+ ++ + ++VA + + FI + + Sbjct: 400 LTYPKLEPKDLSLLRDANACNDRYARVAVKKGIYQFIISNVEKPERMILDFIDMMGKEDD 459 Query: 105 KDVCSFM----TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKT 159 D + I A++V ++ A+Y+D V + + + + R K Sbjct: 460 PDPDPYRVVKAPKILANLVAAVAGAVYIDVNYNVQRLWEIFRGLFEPIYTLDDLRMQPKP 519 Query: 160 ELQEW--AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA--AEQVA 215 K G +++ + G + V + CSKR A+ +A Sbjct: 520 PFLMLFRLADKHGKRIDFRYSKVDG---SRKNIAQVYLDD--MFIASGCSKRIDTAKLLA 574 Query: 216 AAEVLKRE 223 A E L++ Sbjct: 575 AEEALQKL 582 Score = 85.1 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 6/89 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +EK + Y+F N++LL+ A+T S ++RLEF GD +L + + + + + Sbjct: 3 SVEAVEKILNYSFTNKTLLKDAITQRSTL------FDRLEFFGDSVLEVAFTNYIRHTYP 56 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDL 93 + K EL + VS E ++VA L + Sbjct: 57 NLKVKELCDLRTANVSNEKFARVAEILQI 85 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 6/76 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE-----ISGLAPAQGMDCSK 208 D + +L E P + V GP ++ +F V+ I G +G SK Sbjct: 244 PTDGRGKLIEICTKNKWPRPIFSVEEERGPKNEQKFVCSVKIEIPNIEGSFHMKGDAKSK 303 Query: 209 RA-AEQVAAAEVLKRE 223 + AE +A +++ Sbjct: 304 KKQAENSSAYHMIRAL 319 Score = 36.2 bits (83), Expect = 3.9, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 17/41 (41%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 D K +L E P + V GP ++ +F V+I Sbjct: 785 DEKGKLFEICTKNKWPNPIFSVEEERGPKNELKFVCSVKIE 825 >gi|295673975|ref|XP_002797533.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] gi|226280183|gb|EEH35749.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] Length = 1450 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 90/256 (35%), Gaps = 68/256 (26%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY F + L +A TH S + SY+RLEFLGD IL +I LFN + Sbjct: 1136 FRDIESLVGYTFNKKVFLAQAFTHPS-NPGSTMSYQRLEFLGDSILDHIIVDHLFNSPRN 1194 Query: 66 AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99 ++ + SL +A+ + + R++ L ++R Sbjct: 1195 FPHVDMHLMRASLANADFLAFLCIGMTTDEERGEIVEASRNGTFTRMTTRKISLWQYMRH 1254 Query: 100 SSDLRKDVCSFMT--------------------------------SIQADVVESLIAALY 127 + V T +D++ES++ A++ Sbjct: 1255 GTSWELTVSQQQTVNQYQALKADITKALYEADTYPWALLSRLRAQKFFSDLIESVLGAIF 1314 Query: 128 LD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +D G ++ F+++ + +R L++ K L E + Y+ Sbjct: 1315 IDSHGSLDACTAFLERIGLMNFLRRILQAEIDIMHPKQRLGEMV---GQMQVRYETVHVV 1371 Query: 182 GPDHDPRFTVVVEISG 197 D +T V + Sbjct: 1372 EEDALGHWTCKVFVDD 1387 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 22/147 (14%) Query: 17 FANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 F + +L+ AL + +E +Y+R+EFLGD IL S L EG LS Sbjct: 965 FTDLNLVITAL----CAPDAREATNYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNA 1020 Query: 75 FNSLVSAETCSQVARELDLASFIRV--------------SSDLRKDVCSF--MTSIQADV 118 + +VS + S A E L FI V + +D+ T ADV Sbjct: 1021 KDEVVSNKRLSYAAIETGLDKFIFVDIFTGVKWRPLYNKAHVKEQDIPRREMSTKTLADV 1080 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQ 145 +E+L+ A +DGG + + + Sbjct: 1081 IEALLGAATIDGGQIKVEKCLKIFLPE 1107 >gi|330913942|ref|XP_003296428.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1] gi|311331414|gb|EFQ95479.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1] Length = 1572 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 88/254 (34%), Gaps = 39/254 (15%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E + Y F LL A H S + +Y+RLEFLGD +L + T L+ + Sbjct: 1283 KIEAKHPYHFKYPRLLRSAFAHPSYPYIYENIPNYQRLEFLGDSLLDMAFITHLYYKYPD 1342 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVS----------------SDLRKDVC- 108 L+ +VS + V +L +I+ + R+ Sbjct: 1343 KDPQWLTEHKTPMVSNKFLGAVCVKLGWHVYIKQNTAILTSQIRDYVLEAQEAERESGGA 1402 Query: 109 -------SFMTSIQADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKS--GKF 153 S ADV+E+ AAL++D V F + +++ L + Sbjct: 1403 VDYWVTISEPPKCLADVIEAYTAALFVDAEFDFSVVQDFFNLHLKPFFEDMTLDAYENFA 1462 Query: 154 RRDAKTELQEWAHAKFGVTPEYKV----TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 T L FG ++++ T PD ++ I G + S R Sbjct: 1463 SNHPTTRLSRILSINFGCN-DWRMGALETETIIPDKGKAIAAMIMIHGKVHFYSLGQSGR 1521 Query: 210 AAEQVAAAEVLKRE 223 A A+ L++ Sbjct: 1522 YARVRASHAALEKL 1535 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 51/160 (31%), Gaps = 49/160 (30%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +L +ALT S +YERLEFLGD L + S +F Sbjct: 1065 PALALEALTKDSENSEEHGEEKINFKSGMGPNYERLEFLGDCFLKMATSLSVFVQQPDEN 1124 Query: 68 EGELSVRFNSLVSAETCSQVA-------------RELDLASFIRV--------------- 99 E E VR ++ + + A R++ L ++IR Sbjct: 1125 EFEFHVRRMEMLCNKNLLETAIGKKKVTSADGTERDIQLYNYIRTDSFSRRTWYPEGMKL 1184 Query: 100 --SSDLRKD-------VCSFMTSIQADVVESLIAALYLDG 130 + K + ADV E+ I A + + Sbjct: 1185 LRGKGVNKSEDDWLKLTHNLGDKSIADVCEAFIGAAFQEH 1224 >gi|167046026|gb|ABZ10544.1| dicer-like protein C [Placozoa sp. DMJ-2008] Length = 352 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 35/170 (20%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 A LEK IGY+F N+ + +ALTHSS H ES ++LEFLGD IL +I+ Sbjct: 178 EANNLERLEKVIGYSFQNKLFMIRALTHSSYHHHNIAIESNQKLEFLGDTILQYIIARHF 237 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFM------- 111 FN AK +L ++V+ + + + + ++ +I + S DL +D+ F+ Sbjct: 238 FNSHPDAKPAKLHDFQEAIVNNKCLADIGIAIGVSKYIFQESPDLFRDINQFVKIITCDY 297 Query: 112 -------------------------TSIQADVVESLIAALYLDGGIEVAG 136 +DVVE+LI A+Y+D G +A Sbjct: 298 MIDDEMNYNDRTEALFENFTEEVKIPKPMSDVVEALIGAIYIDTGESIAE 347 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + E LEFLGD L +I+ LF EG+L+ +V + ++ + + +I Sbjct: 9 NLEGLEFLGDSFLKFIIAANLFISHPKYHEGQLTNELTKIVRNDNLLKLGKSTPICEYII 68 >gi|121717533|ref|XP_001276079.1| RNase3 domain protein [Aspergillus clavatus NRRL 1] gi|119404277|gb|EAW14653.1| RNase3 domain protein [Aspergillus clavatus NRRL 1] Length = 228 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 81/213 (38%), Gaps = 18/213 (8%) Query: 27 LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86 TH + +Y+RLE LGD + L+ + L++N F G +S LV ET S+ Sbjct: 6 FTHPGVGKDLNSTYDRLEILGDAYIELIATKLIWNEFKDLSSGRISQMRELLVKNETLSE 65 Query: 87 VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTFVDKYW 143 A S V D + T + D+ ES +AA+ L G VA ++ + W Sbjct: 66 FAALYGFDSRAAVPHDYLNQPKRW-TKTKGDIFESYVAAVILSRPLDGYSVAERWLTQLW 124 Query: 144 KQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD----HDPRFTVVVEISG 197 R + R DAK L + AK Y P F + + ++G Sbjct: 125 LPKLRCTALRQPRLDAKEALAKKIMAKGIKL-RY--IDEYPPSRPSGGVQTFHIALYLTG 181 Query: 198 -----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G SK A AA + L E + Sbjct: 182 WGWHNRHLGSGQGPSKAIAGDAAARQALLNESL 214 >gi|15242329|ref|NP_199328.1| RTL3 (RNase three-like protein 3); RNA binding / double-stranded RNA binding / ribonuclease III [Arabidopsis thaliana] gi|75171238|sp|Q9FKF0|RTL3_ARATH RecName: Full=Ribonuclease 3-like protein 3; AltName: Full=Ribonuclease III-like protein 3; Short=RNase III-like protein 3; AltName: Full=Ribonuclease three-like protein 3 gi|9759600|dbj|BAB11388.1| unnamed protein product [Arabidopsis thaliana] gi|332007827|gb|AED95210.1| RNAse THREE-like protein 3 [Arabidopsis thaliana] Length = 957 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 28/178 (15%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+++ +EK + Y+F N++LL++A+T S ++RLEF GD IL + + + Sbjct: 1 MNSV--EAVEKILNYSFVNKTLLKEAITQKS------PLFDRLEFFGDSILEVAFTNYIC 52 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSF--------- 110 + + + K EL + VS E +++A +L F+ + + L K V +F Sbjct: 53 HTYPNLKVKELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAEAVRKEDD 112 Query: 111 ---------MTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAK 158 I AD +ES+ A +++D +V + + + + K Sbjct: 113 PVPYGGLVKAPKILADTLESIAATVFIDVNYDVKRLWEIFRSLLEPIYTPDDLLLQPK 170 Score = 87.4 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 88/249 (35%), Gaps = 42/249 (16%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + +EK + Y+F N++LL++ LTH + ++ L F+G+ L L + L+ Sbjct: 411 MDS-SVEAVEKILNYSFVNKTLLKELLTH-----NNSPLFQGLMFVGESALSLAFTKHLY 464 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLA---------------SFI-RVSSDLR 104 + + +LSV ++ + + VA + + FI + + Sbjct: 465 LTYPMLEPKDLSVLRDANTCHDKYACVAVKKGIYQSFIGSVPKPEKMTTDFIELMGKEDD 524 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQE 163 I +++ + A+Y+D V + + + R Sbjct: 525 PYRVVKAPKILVNLLAGVAGAVYIDVKYNVQRLLEIFRVLLEPIYTLDDLRM-------- 576 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRF---------TVVVEISGLAPAQGMDCSKRAAEQV 214 K +++ + G D R+ V + + A G A+ + Sbjct: 577 --QLKQPFLMLFRLADKHGKQIDFRYSKDGGSRKNIAQVYMDDMFIASGCAKRIDTAKLL 634 Query: 215 AAAEVLKRE 223 AA E +++ Sbjct: 635 AAEEAIQKL 643 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE-----ISGLAPAQGMDCSKRA-AEQ 213 EL E P + V GP ++P+F V+ I G +G SK+ AE Sbjct: 311 ELIEICTKNKWPRPIFSVQEEKGPKNEPKFVCSVKIEIPNIEGTFHMKGDIKSKKKQAEN 370 Query: 214 VAAAEVLKRE 223 A +++ Sbjct: 371 SLAYHMIRAL 380 Score = 39.3 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 6/74 (8%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE-----ISGLAPAQGMDC-SKR 209 D K +L E P + V G ++ + V+ I G +G +K+ Sbjct: 837 DEKGKLFEICAKNKWPNPIFSVEEERGQQNEQKIVCSVKIEIPNIEGTFHIKGDAKPTKK 896 Query: 210 AAEQVAAAEVLKRE 223 AE +A +++ Sbjct: 897 EAENSSADHMIRAL 910 >gi|170086892|ref|XP_001874669.1| predicted protein [Laccaria bicolor S238N-H82] gi|164649869|gb|EDR14110.1| predicted protein [Laccaria bicolor S238N-H82] Length = 353 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 87/236 (36%), Gaps = 22/236 (9%) Query: 6 YSTLEKRIGYA--FANRSLLEKALTHSSISHSYQESYER---------LEFLGDRILGLL 54 S RIG A + L+++A TH S + Y + Y R L LG+ +LGL Sbjct: 59 LSAFAHRIGLASILTSTDLIQQACTHPSFTALYSQHYPRETPPSTNAQLVILGNSLLGLF 118 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 + L + + V TC+ +A+E+ +R R S+ Sbjct: 119 ATEYLNAKYPYLPTRVQKAALTAHVGPATCASIAQEMGATPLVRWHRTPRTST---RPSV 175 Query: 115 Q-----ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHA 167 A V +L A +Y + A FV Y+ R + + D K L E Sbjct: 176 LHTDALASVPRALTALVYQQRSLFSARKFVHSYFLSRQIDLRGMLKFLDPKKALLEMVKK 235 Query: 168 KFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P+ ++ +G + P F V + +G S + AE AA + L R Sbjct: 236 FDREKPKSRLLKETGRFSNSPVFVVGIFSGADQLGEGFGSSLKMAEFRAAEDALHR 291 >gi|322707759|gb|EFY99337.1| Dicer-like protein 2 [Metarhizium anisopliae ARSEF 23] Length = 1442 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 60/280 (21%), Positives = 104/280 (37%), Gaps = 64/280 (22%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFN 61 LE +GY F +SLL +A+TH S Y + SYE LEF+GD IL +I ++ Sbjct: 1152 PAELKPLEHLVGYQFNKKSLLIEAMTHQSCMFDYQRRSYEHLEFIGDAILDFIIVRKMYT 1211 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARE-----------------------LDLASFIR 98 ++ ++V+A+ + ++ + L L +F+R Sbjct: 1212 AEPLLAPHQMHSLKTAMVNADFLAFLSLDHQMRRTETAVTSDLQIVDKETTPLALWTFMR 1271 Query: 99 VSSDL----------------------RKDVCSF---------MTSIQADVVESLIAALY 127 SS+ + + +D+ ESL+ A++ Sbjct: 1272 HSSEAIGIEQATTLKRYEALRGEILATLRQGSHYPWALLAGLQAKKFYSDIFESLLGAVW 1331 Query: 128 LDGG-IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +D G IE+ + K+ R LK + K L + A + T Y V + Sbjct: 1332 VDSGSIELCECMLQKFGVLSILDRLLKDRVQVQHPKEVLGKMAVTQ---TVTYNVDVQEA 1388 Query: 183 PDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLK 221 PD D FT V + + + +K + AA ++ Sbjct: 1389 PDGDRAFTCRVLVGQRVITEVVDGVTKEEVKTKAAEAAIR 1428 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +T+ +RI + L+ +A++ S + +YERLEFLGD IL + + Sbjct: 977 TTILERINIT--DLRLVREAISSRSAAEPV--NYERLEFLGDSILKYCTAIQVSAIHPEW 1032 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCS 109 EG LS + LVS S+ A ++ LA FI + + Sbjct: 1033 PEGYLSFFKDRLVSNSRLSRAAIDVGLAKFILTKTFTGQKWRPLYLENYTGNPGKVSPRK 1092 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 T ADVVE+LI A Y++GGI A + + + + Sbjct: 1093 LSTKTLADVVEALIGASYVNGGITKALSCISLFVNE 1128 >gi|195997771|ref|XP_002108754.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens] gi|190589530|gb|EDV29552.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens] Length = 1018 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 37/180 (20%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNH 62 LEK IGY+F N+ + +ALTHSS H ES ++LEFLGD IL +I+ FN Sbjct: 813 NLERLEKVIGYSFQNKLFMIRALTHSSYHHHDIAIESNQKLEFLGDTILQYIIARHFFNS 872 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF----------- 110 AK +L ++V+ + + + + ++ ++ + S DL +D+ F Sbjct: 873 HPDAKPAKLHDFQEAIVNNKCLAVIGIAIGVSKYVFQESPDLFRDIDQFAKIITCDYMID 932 Query: 111 ---------------------MTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRA 147 + +DVVE+LI A+Y+D G I + + R Sbjct: 933 DEMNYNDRTEALFENFTEEVKIPKPVSDVVEALIGAIYIDTGESIAEVTKALMPLLQPRI 992 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +ALT + S ERLEFLGD L +I+ LF EG+L+ +V + Sbjct: 627 LLEALTLAEAEDDI--SLERLEFLGDSFLKFIIAANLFISHPKYHEGQLTNELTKIVRND 684 Query: 83 TCSQVARELDLASFIR 98 ++ + + +I Sbjct: 685 NLLKLGKSTPICEYII 700 >gi|52549755|gb|AAU83604.1| similar to ribonuclease III [uncultured archaeon GZfos32E4] Length = 264 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 104/246 (42%), Gaps = 31/246 (12%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 LE IG+ F N +LLE+A+T S S+ + +Y+ LEFLGDR+L L+++ LF Sbjct: 13 KFELMELEASIGHQFKNIALLEEAITTGSYSNEHPGSSNYQTLEFLGDRVLSLILAEELF 72 Query: 61 N--HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 S EG+++ L + ++ + L ++IR + + ADV Sbjct: 73 KLSKSASLDEGKMTFLKAELENNLRLAEYGENIGLRNYIRANEKRED----IRPKVIADV 128 Query: 119 VESLIAALYLDGG----IEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFG 170 E++ A+YLD I+ + K+ ++ + SGK + + + K Sbjct: 129 FEAICGAIYLDTEESIRIKEVKKILLKFEILERIKKEMSSGKGFLPIRNQFENKFREKHR 188 Query: 171 VTPEYKVTFRS--GPDHDPRFTVV-VEISGLAPAQGMD------------CSKRAAEQVA 215 PE K +S G +H R+ + I + + ++ SK A+ A Sbjct: 189 CNPEIKFEQKSTLGEEHPTRWRIEKCSIKDIQTGEYVELRGVRSDTDKSFSSKSEAKTDA 248 Query: 216 AAEVLK 221 + K Sbjct: 249 IKQAYK 254 >gi|325093360|gb|EGC46670.1| dicer-like protein [Ajellomyces capsulatus H88] Length = 1436 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 97/282 (34%), Gaps = 67/282 (23%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY F + L +A TH S S SY+RLEF+GD IL +I LFN + Sbjct: 1097 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVYHLFNAPRT 1156 Query: 66 AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99 ++ + +L +A+ + + R++ L ++R Sbjct: 1157 LPHFDMHLMRTALANADFLAFLCIGMSTERVRGEIAECSKENTSTKLTTRKVSLWQYMRH 1216 Query: 100 SSDLRKDVCSFMTSIQ--------------------------------ADVVESLIAALY 127 + T+ Q +D++ES++ A++ Sbjct: 1217 GTSWELTAAQQQTANQYQTLQADISEALEKSHTYPWTLLSRLHAQKFFSDLIESVLGAIF 1276 Query: 128 LD--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTEL-QEWAHAKFGVTPEYKVTF 179 +D G +E F+++ + ++ + K L QE K E+ V Sbjct: 1277 IDSHGSLEACTAFLERIGLMKFLRRMLVDEDMDLMHPKQRLGQEVGTRKVRYEAEHVVDE 1336 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVL 220 G +T V + + S E AA L Sbjct: 1337 EGGIGTLGYWTCKVFVGDECVVEANDGVSLMEVEAKAAETAL 1378 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 20/149 (13%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 AF + SL+ A++ +S + +Y+R+EFLGD IL + L EG LS Sbjct: 922 VAFTDLSLVITAIS-ASAAREAT-NYQRIEFLGDSILKFQTTLQLTAANPIWHEGLLSRA 979 Query: 75 FNSLVSAETCSQVARELDLASFIRVS-----------------SDLRKDVCSFM-TSIQA 116 +++VS + S A E L FI + S+ + M T A Sbjct: 980 KDTVVSNKRLSYAAIETGLDKFILLDVFTGAKWRPPCNKDHLESEEQGVPQREMSTKTLA 1039 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 DVVE+L+AA LDGG A ++ + + Sbjct: 1040 DVVEALLAAATLDGGQRKAEKCLEIFLPE 1068 >gi|310794561|gb|EFQ30022.1| RNase3 domain-containing protein [Glomerella graminicola M1.001] Length = 334 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 55/254 (21%), Positives = 92/254 (36%), Gaps = 51/254 (20%) Query: 16 AFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 +N L A TH ++ + + SY+RLE+LGD L L+ S+L+F F G+ S Sbjct: 61 KISNPVLEMAAFTHVGMAKTKTDLSYDRLEWLGDAYLELISSSLIFQTFGGLPTGKCSQL 120 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-------SFMTSIQADVVESLIAALY 127 L+ + + L ++ S+ R + + + D+ E+ +AA+ Sbjct: 121 RELLIRNSNLGEYSAHYKLFERAKLPSEYRPNGTLPAMAKPHEIQKVHGDLFEAYVAAIA 180 Query: 128 LD---GGIEVAGTFVDKYWKQRALKSGKFR-RD--------------------AKTELQE 163 L G+ A ++ W + + RD K L + Sbjct: 181 LSDPVSGLSRAAEWLKTLWARTIRDQIRTNARDPGMGMVKELGGTTTVETQVPPKVRLSQ 240 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPR---------FTVVVEISG-----LAPAQGMDCSKR 209 AK G+ Y P + + FTV V + G G D +K+ Sbjct: 241 IISAK-GINIRY----EDMPSANKKDKYNKKLALFTVGVYLDGWGEKNKLLGTGSDLNKK 295 Query: 210 AAEQVAAAEVLKRE 223 A Q AA L + Sbjct: 296 EAGQKAAQMALNNK 309 >gi|289619621|emb|CBI53904.1| unnamed protein product [Sordaria macrospora] Length = 1586 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 54/284 (19%), Positives = 97/284 (34%), Gaps = 74/284 (26%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +R+GY F + LL A H + + SY+RLEFLGD + ++ LF F + Sbjct: 1260 KFSERMGYKFKHPRLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFPA 1319 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSI---------- 114 A L+ ++VS + ++ L + +S + KD+ ++T I Sbjct: 1320 ADPQWLTEHKMAMVSNQFLCCLSYHLGFYKCVATMSPSILKDIAEYVTEIEEALEAAKQE 1379 Query: 115 ----------------------------QADVVESLIAALYLDG--GIEVAGTF----VD 140 +DVVE+ I A+++D V F V Sbjct: 1380 AVNQGKAPEEYSRDYWVHITHVSRLPKCLSDVVEAYIGAIFVDSEYDYSVVQQFFTTHVL 1439 Query: 141 KYWKQRALKSGKFRRDAKTEL----------QEW--AHAKFGVTPEY-----------KV 177 +++ L + T + QEW + ++ Sbjct: 1440 PFFEDMHLYDSFANKHPVTFVANMMAHKFCCQEWRSLAKELDTDVSEGRGGRGGAVAGEI 1499 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T + P+ + + G A + S R A+ A + +K Sbjct: 1500 TEI----NPPKVVSALLVHGKTVAHAVAASGRYAKSAMAKKAIK 1539 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 52/150 (34%), Gaps = 31/150 (20%) Query: 11 KRIGYAFANRSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTL 58 K +G L +A T S ++YERLEFLGD L + + Sbjct: 1058 KLLGLDLR-PDLALEAFTKDSDNSNEHDVEQVNFQTGMGDNYERLEFLGDSFLKMATTMS 1116 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDL 103 ++ E E V L+ + A E+ L +IR + Sbjct: 1117 IYTLIPDKGEFEYHVERMLLICNKNLLNNALEVGLEEYIRSMSFNRRQWYPEGLVLKKGK 1176 Query: 104 RKDVCSFM---TSIQADVVESLIAALYLDG 130 KD + ADV E+LI A YL G Sbjct: 1177 NKDARTRHVLADKSIADVCEALIGAAYLTG 1206 >gi|67525463|ref|XP_660793.1| hypothetical protein AN3189.2 [Aspergillus nidulans FGSC A4] gi|40743766|gb|EAA62953.1| hypothetical protein AN3189.2 [Aspergillus nidulans FGSC A4] Length = 1726 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 81/246 (32%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62 ++ LE IGY F +++LL +ALTH S + +SY+RLEFLGD +L +LI L+ H Sbjct: 1351 IQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAH 1410 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVA------------------------------RELD 92 ++GE++ +++V+ + + + L Sbjct: 1411 HVECQQGEMTKIKHAIVNGHLLAFLCMQFKWAMPSPLTPSIDTGTETETEIISPPPKTLS 1470 Query: 93 LASFIRVS------------SDLRKDVCSFM---TSIQ---------------------- 115 L S++R S S + SI Sbjct: 1471 LYSYLRYSPSRPLPLHVEPESGSSNALTRHNLLCPSILHALNNTTAYPWSLFSAIHADKF 1530 Query: 116 -ADVVESLIAALYLDGG--IEVAGTFVDKY----WKQRALKSGKFRRDAKT-----ELQE 163 +DVVES+I A+++D G + F+++ +R L T ELQ+ Sbjct: 1531 FSDVVESIIGAIFVDSGGDLGACAGFIERLGLVRIAKRILDERVDVTHP-TQRAQIELQK 1589 Query: 164 WAHAKF 169 A Sbjct: 1590 LAARLG 1595 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 17/156 (10%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 F + + A+T Y+R EF GD +L ++ LF + + EG L+ Sbjct: 1182 IQFQDLRHVITAITMPLA--QAPTDYQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTET 1239 Query: 75 FNSLVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSFMTS--IQADVV 119 ++LV ++ A + L ++I +S L + S + ADVV Sbjct: 1240 LHALVQNARLTRAALDQGLDAYIISNRFTPRKWSAPLISEKLYASASTRSMSAKVLADVV 1299 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 E+LI A Y+DGG+ A + + ++ + L K R Sbjct: 1300 EALIGAAYIDGGLHKAQSCIVRFLPEIELPETKLPR 1335 >gi|240276002|gb|EER39515.1| dicer-like protein [Ajellomyces capsulatus H143] Length = 800 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 53/282 (18%), Positives = 96/282 (34%), Gaps = 67/282 (23%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY F + L +A TH S S SY+RLEF+GD IL +I LFN Sbjct: 461 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVYHLFNAPRI 520 Query: 66 AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99 ++ + +L +A+ + + R++ L ++R Sbjct: 521 LPHFDMHLMRTALANADFLAFLCIGMSTERVRGEIAECSKENTSTKLTTRKVSLWQYMRH 580 Query: 100 SSDLRKDVCSFMTSIQ--------------------------------ADVVESLIAALY 127 + T+ Q +D++ES++ A++ Sbjct: 581 GTSWELTAAQQQTANQYQTLQADISEALEKSHTYPWTLLSRLHAQKFFSDLIESVLGAIF 640 Query: 128 LD--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTEL-QEWAHAKFGVTPEYKVTF 179 +D G ++ F+++ + ++ + K L QE K E+ V Sbjct: 641 IDSHGSLDACTAFLERIGLMKFLRRMLVDEDMDLMHPKQRLGQEVGTRKVRYEAEHVVDE 700 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVL 220 G +T V + + S E AA L Sbjct: 701 EGGIGTLGYWTCKVFVGDECVVEANDGVSLMEVEAKAAETAL 742 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 20/149 (13%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 AF + SL+ A++ +S + +Y+R+EFLGD IL + L EG LS Sbjct: 286 VAFTDLSLVITAIS-ASAAREAT-NYQRIEFLGDSILKFQTTLQLTAANPIWHEGLLSRA 343 Query: 75 FNSLVSAETCSQVARELDLASFIRVS-----------------SDLRKDVCSFM-TSIQA 116 +++VS + S A E L FI + S+ + M T A Sbjct: 344 KDTVVSNKRLSYAAIETGLDKFILLDVFTGAKWRPPCNKDHLESEEQGVPQREMSTKTLA 403 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 DVVE+L+AA LDGG A ++ + + Sbjct: 404 DVVEALLAAATLDGGQRKAEKCLEIFLPE 432 >gi|169868762|ref|XP_001840952.1| hypothetical protein CC1G_03181 [Coprinopsis cinerea okayama7#130] gi|116498110|gb|EAU81005.1| hypothetical protein CC1G_03181 [Coprinopsis cinerea okayama7#130] Length = 2074 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 58/307 (18%), Positives = 102/307 (33%), Gaps = 103/307 (33%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHF 63 + + +E +GY F + LL +ALTH+S SYER+EF+GD IL ++++ +L+ Sbjct: 1732 QLADVEHMLGYTFKRKILLIEALTHASYREHINTISYERMEFIGDSILDMVVTDMLYRAP 1791 Query: 64 DSAKEGELSVRFNSLVSAETCSQV------------------------------------ 87 G + +R +++V+ + + Sbjct: 1792 REYSPGHIHLRRSAVVNGHFLAYICLGMWRELEGVMPQPSASSNAGKDDWNPYLNPPTFE 1851 Query: 88 ----ARELDLASFIRVSS-----DLRKDVCSF--------------------------MT 112 A + L+ + SS DLR V + Sbjct: 1852 EGTTAHRIHLSQCLLHSSQQVLDDLRNTVERYELRREEIADALEHGSIFPWSSLTRLQAP 1911 Query: 113 SIQADVVESLIAALYLDGGIE--VAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAH 166 +D+VES I A ++D G V + + + +R ++ + L WA Sbjct: 1912 KFLSDIVESTIGAAFIDSGFSIPVVTSIIRRIGILPVLERIIRDDVDVLHPVSRLSMWA- 1970 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ------------V 214 A+ EYK + G V + G+ R E+ Sbjct: 1971 AQNERKVEYKYEKKRGD-----VACTVVVDGVEEV-------REVEKYRGVSSEVEVRFA 2018 Query: 215 AAAEVLK 221 AA +K Sbjct: 2019 AAERAIK 2025 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L ALT + +Y+RLE LGD +L L +F + EG L+ R + V+ Sbjct: 1493 LTVALTAPVAGERH--NYQRLETLGDTVLKFLAGIQIFAEYPMWHEGYLTKRKDHAVANV 1550 Query: 83 TCSQVARELDLASFIR 98 ++ + + +I Sbjct: 1551 RLAKECVKRGVVRWII 1566 >gi|116204679|ref|XP_001228150.1| hypothetical protein CHGG_10223 [Chaetomium globosum CBS 148.51] gi|88176351|gb|EAQ83819.1| hypothetical protein CHGG_10223 [Chaetomium globosum CBS 148.51] Length = 327 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 89/235 (37%), Gaps = 32/235 (13%) Query: 19 NRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 + +L ALTHS + + + SYE+LE++GD L L+ S L+ F + G S Sbjct: 68 DSALETAALTHSGMRKNLSDPSYEQLEWIGDVYLELIASELISQTFPTLDPGRSSHYREM 127 Query: 78 LVSAETCSQVARELDLASFIR----VSSDLRKDVC----SFMTSIQADVVESLIAALYL- 128 LV T Q A L R + D+ E+ + A+ Sbjct: 128 LVRNSTLGQFAVHYGLDKRANFPAEFGLGGRPNGTKASEKQRAKALGDIFEAYVGAIVRS 187 Query: 129 --DGGIEVAGTFVDKYWKQ------RALKSGKFRRD----AKTELQEWAHAKFGVTPEYK 176 + G+ A ++ W R +SG +D KT+L++ GV EYK Sbjct: 188 DPENGMRRAAEWLKMLWGPVLERQIREEESGSRVKDRDLNPKTQLEQMI-GGPGVRIEYK 246 Query: 177 VTFRSGP---DHDPR-FTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222 G D + F V ++G L G K+ A Q AA + ++ Sbjct: 247 DLPSGGKKDRDTNQELFFVGCFLTGWGETSLQLGYGGALGKKEAGQKAAVKAMEN 301 >gi|328768090|gb|EGF78137.1| hypothetical protein BATDEDRAFT_37305 [Batrachochytrium dendrobatidis JAM81] Length = 343 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 13/231 (5%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + + + R G F +L +TH S + ES +R +LG +L ++ + Sbjct: 84 NKAQVAAFSARTGILFDTPDILSLVMTHKSA---HLESNDRYVYLGSTVLKTFVTEYVLA 140 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV--SSDLRKDVCSFMTS-IQADV 118 + + + +S + V + L + +R S+D + S + ++A V Sbjct: 141 KYPLMQADIAERVIEAYISTSVVASVGQTLGVHLLMRWKGSTDANSNAVSDGVNTVRASV 200 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRA-----LKSGKFRRD-AKTELQEWAHAKFGVT 172 + +LI A+Y G A T + K++ RA + + + D + L Sbjct: 201 MHALIGAVYQHKGPHAARTLIHKHFLSRATDVQSIVEAQLKMDKPRKLLAITCKNLKKPK 260 Query: 173 PEYKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P ++ +G F V V +G S + AEQ A + L + Sbjct: 261 PISRLLGETGRLSSRSVFLVGVYCGIEKIGEGYGSSIKMAEQRACIDALSK 311 >gi|296422379|ref|XP_002840738.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636961|emb|CAZ84929.1| unnamed protein product [Tuber melanosporum] Length = 524 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 84/223 (37%), Gaps = 37/223 (16%) Query: 21 SLLEKALTHSSISHSY--------QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 L ++A TH S Q+ YERLEFLGD L + S +L+N F +EG LS Sbjct: 274 ELRQQAFTHKSFIKGEDAGLPGIEQQHYERLEFLGDSYLQSITSRILYNRFSKLREGPLS 333 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSD---------LRKDVCSFMT----SIQADVV 119 LV+ S A +R S + ++ AD Sbjct: 334 DMRQQLVANRPLSTYATIYRFHDKVRESKGQNTAAPVALVHNSRGTYKDMGVNKTLADCF 393 Query: 120 ESLIAALYLDG--GIEVAGTFVDKYWKQRALKS-------GKFRRDAKTELQEWAHAKFG 170 E+ IAA+ LD G+++A ++ + ++ + + G + AK L Sbjct: 394 EAYIAAIVLDSPNGVDIAQRWLTELFEPKLKEMETQHASVGPVDKMAKQTLNTIV-GGNR 452 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISG-----LAPAQGMDCSK 208 T EY T G + + + V ++G G +K Sbjct: 453 ATVEYVWTDGEG-GNKGGYWITVYLTGWGFNKREIGSGWGNNK 494 >gi|259485853|tpe|CBF83228.1| TPA: Dicer-like protein 2 [Includes Endoribonuclease dcl2(EC 3.1.26.-);ATP-dependent helicase dcl2(EC 3.6.1.-)] [Source:UniProtKB/Swiss-Prot;Acc:P0C5H7] [Aspergillus nidulans FGSC A4] Length = 1269 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 81/246 (32%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62 ++ LE IGY F +++LL +ALTH S + +SY+RLEFLGD +L +LI L+ H Sbjct: 894 IQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAH 953 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVA------------------------------RELD 92 ++GE++ +++V+ + + + L Sbjct: 954 HVECQQGEMTKIKHAIVNGHLLAFLCMQFKWAMPSPLTPSIDTGTETETEIISPPPKTLS 1013 Query: 93 LASFIRVS------------SDLRKDVCSFM---TSIQ---------------------- 115 L S++R S S + SI Sbjct: 1014 LYSYLRYSPSRPLPLHVEPESGSSNALTRHNLLCPSILHALNNTTAYPWSLFSAIHADKF 1073 Query: 116 -ADVVESLIAALYLDGG--IEVAGTFVDKY----WKQRALKSGKFRRDAKT-----ELQE 163 +DVVES+I A+++D G + F+++ +R L T ELQ+ Sbjct: 1074 FSDVVESIIGAIFVDSGGDLGACAGFIERLGLVRIAKRILDERVDVTHP-TQRAQIELQK 1132 Query: 164 WAHAKF 169 A Sbjct: 1133 LAARLG 1138 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 17/156 (10%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 F + + A+T Y+R EF GD +L ++ LF + + EG L+ Sbjct: 725 IQFQDLRHVITAITMP--LAQAPTDYQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTET 782 Query: 75 FNSLVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSFMTS--IQADVV 119 ++LV ++ A + L ++I +S L + S + ADVV Sbjct: 783 LHALVQNARLTRAALDQGLDAYIISNRFTPRKWSAPLISEKLYASASTRSMSAKVLADVV 842 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 E+LI A Y+DGG+ A + + ++ + L K R Sbjct: 843 EALIGAAYIDGGLHKAQSCIVRFLPEIELPETKLPR 878 >gi|255720468|ref|XP_002556514.1| KLTH0H15180p [Lachancea thermotolerans] gi|238942480|emb|CAR30652.1| KLTH0H15180p [Lachancea thermotolerans] Length = 494 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 86/236 (36%), Gaps = 29/236 (12%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 N ++ + H S+ + + ERLEFLGD IL I+ +L+N F Sbjct: 191 EIKNSAIKARVFIHKSMINDKLYLSEHDMIKAHNERLEFLGDSILNTTITMILYNKFPHL 250 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---LRKDVCSFMTSIQADVVESLI 123 EG+LS L+S E + + +R + D D + ADV E+ I Sbjct: 251 SEGQLSKLRMKLISNERLKKWSFLYKFNEKLRTNLDKTCENNDFKHGKQKLYADVFEAYI 310 Query: 124 AALYLD---GGIEVAGTFV---------DKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 L D + ++ +++ K L + +AK L + Sbjct: 311 GGLIEDDPKHNLPKVRKWLSKLASPVIEEEFKKDDDLDVNEVDINAKKTLYSLI-GYAAL 369 Query: 172 TPEYKVTFR-SGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 YK + S D + V I G G + + A AA +VL+ + + Sbjct: 370 NLHYKPIQKPSSEDSNAL--VECRIKDGTVLGVGKGRNIKIAGMRAAQQVLQNKPL 423 >gi|195124758|ref|XP_002006854.1| GI21295 [Drosophila mojavensis] gi|193911922|gb|EDW10789.1| GI21295 [Drosophila mojavensis] Length = 1728 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LEK +GY F +R+ L +ALTH S ++ Y+ LEF+GD IL LIS +F H Sbjct: 1438 INHQYLEKNLGYTFCDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFEH 1497 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G+L+ ++LV+ T + + FI Sbjct: 1498 KTRMTPGQLTDLRSALVNNTTLACICVRHRFHFFIL 1533 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 17/121 (14%) Query: 110 FMTSIQADVVESLIAALYLDG-GIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHA 167 + DV+E+LIAA+YLD + V K ++ L+ S + +L E Sbjct: 1613 DVPKALGDVLEALIAAVYLDCRDLNTTWQVVYKLFEPELLEFSRNVPLNPIRQLFE---- 1668 Query: 168 KFGVTPEYKVTFRSGP--DHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P + S P D++ V + G + + A+ AA L++ Sbjct: 1669 HKLAKPTF-----SSPVMDNNQV-MVTCQFICMDKTIKVYGFGNNGKQAKLSAAKHALQK 1722 Query: 223 E 223 Sbjct: 1723 L 1723 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 25/59 (42%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ER E LGD L L + L N + EG L+ ++LVS E D+ I Sbjct: 1215 DMERFELLGDCFLKLSATLYLANRYPDWNEGILTQVKSTLVSNRNLLYCLSETDIPQRI 1273 >gi|50312305|ref|XP_456185.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49645321|emb|CAG98893.1| KLLA0F24816p [Kluyveromyces lactis] Length = 478 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 85/234 (36%), Gaps = 31/234 (13%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 N + + H S+ + + ERLEFLGD IL ++T+++N F Sbjct: 197 KIKNPVIRARVFIHKSMINDKLYLTDQEIIRSHNERLEFLGDSILNTTMTTIIYNKFPHF 256 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS L++ E + + ++ + D + ADV E+ I L Sbjct: 257 DEGQLSQLRMRLINNELLKEWSFLYKFPDELKTHNVKPDDNKDGKQKLYADVFEAYIGGL 316 Query: 127 YLDGG---IEVAGTFVDKYWKQRA----------LKSGKFRRDAKT---ELQEWAHAKFG 170 D G + ++ K + + + +AK L +A Sbjct: 317 VEDNGKKNLPKIRKWLAKLAEPVISKGLNSDITLENTTEVDVNAKKTLYSLIGYAALNLH 376 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P +K T DP V I G +G+ + + A AA +VL + Sbjct: 377 YYPVHKPTST-----DPNAIVECRITGGKVLGRGVGKNIKIAGMRAAEDVLNNK 425 >gi|83772763|dbj|BAE62891.1| unnamed protein product [Aspergillus oryzae] Length = 1374 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 21/141 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65 +E+++GY F LL A TH S ++ + Y+RLEFLGD +L ++ LF + Sbjct: 1155 KVEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPD 1214 Query: 66 AKEGELSVRF------------------NSLVSAETCSQVARELDLASFIRV-SSDLRKD 106 L+ ++VS + +A +L L + +R S+ L+ Sbjct: 1215 KDPQWLTEHKVSVRLFVSTKHLLTITLQMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQ 1274 Query: 107 VCSFMTSIQADVVESLIAALY 127 + + IQA ES A Y Sbjct: 1275 ITHYAEEIQAAENESQGAVDY 1295 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 50/147 (34%), Gaps = 34/147 (23%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +A T H + ++YERLEFLGD L + S LF Sbjct: 957 PEYALEAFTKDSDNTEEHRVQQIHVQRGMGKNYERLEFLGDCFLKMATSISLFVQNPDDD 1016 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASF-----------------IRVSSDLRKDVCSF 110 E + V L+ + A + +L + + D RK + + Sbjct: 1017 EFDFHVNRMCLICNKNLFNTALKKELYQYTRSRGFSRHTWYPDGLTLLHGRDHRKKISAE 1076 Query: 111 -----MTSIQADVVESLIAALYLDGGI 132 ADV E+LI A L GG+ Sbjct: 1077 SKHALREKTVADVCEALIGASLLSGGL 1103 >gi|158706440|sp|P0C5H7|DCL2_EMENI RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl2; Includes: RecName: Full=ATP-dependent helicase dcl2 Length = 1429 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 81/246 (32%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62 ++ LE IGY F +++LL +ALTH S + +SY+RLEFLGD +L +LI L+ H Sbjct: 1054 IQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAH 1113 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVA------------------------------RELD 92 ++GE++ +++V+ + + + L Sbjct: 1114 HVECQQGEMTKIKHAIVNGHLLAFLCMQFKWAMPSPLTPSIDTGTETETEIISPPPKTLS 1173 Query: 93 LASFIRVS------------SDLRKDVCSFM---TSIQ---------------------- 115 L S++R S S + SI Sbjct: 1174 LYSYLRYSPSRPLPLHVEPESGSSNALTRHNLLCPSILHALNNTTAYPWSLFSAIHADKF 1233 Query: 116 -ADVVESLIAALYLDGG--IEVAGTFVDKY----WKQRALKSGKFRRDAKT-----ELQE 163 +DVVES+I A+++D G + F+++ +R L T ELQ+ Sbjct: 1234 FSDVVESIIGAIFVDSGGDLGACAGFIERLGLVRIAKRILDERVDVTHP-TQRAQIELQK 1292 Query: 164 WAHAKF 169 A Sbjct: 1293 LAARLG 1298 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 17/156 (10%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 F + + A+T Y+R EF GD +L ++ LF + + EG L+ Sbjct: 885 IQFQDLRHVITAITMP--LAQAPTDYQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTET 942 Query: 75 FNSLVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSFMTS--IQADVV 119 ++LV ++ A + L ++I +S L + S + ADVV Sbjct: 943 LHALVQNARLTRAALDQGLDAYIISNRFTPRKWSAPLISEKLYASASTRSMSAKVLADVV 1002 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 E+LI A Y+DGG+ A + + ++ + L K R Sbjct: 1003 EALIGAAYIDGGLHKAQSCIVRFLPEIELPETKLPR 1038 >gi|158705874|sp|A4RHU9|DCL2_MAGO7 RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease DCL2; Includes: RecName: Full=ATP-dependent helicase DCL2 Length = 1485 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 111/300 (37%), Gaps = 85/300 (28%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+ +GY+F +SLL +A+TH+S + S S ERLEFLGD +L ++ LF+ D A Sbjct: 1171 LEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPA 1230 Query: 67 KEGE--LSVRFNSLVSAETCSQVARE-----------------------------LDLAS 95 + + ++V+ E +A E L L Sbjct: 1231 PIEHYNMHLLRTAVVNGEFLGFLAMEWRTAATQRSVVVRTGQGTADELETVETPGLPLFG 1290 Query: 96 FIRVSSD---------------LRKDVCS-----------------FMTSIQADVVESLI 123 F+R ++ ++ + +DV+E++I Sbjct: 1291 FLRHNASGDWVRDQQLAEERHAEMAPGIRDALEHGQRYPWDLLARLRISKVHSDVLEAVI 1350 Query: 124 AALYLDGG-IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAH-----------A 167 A+++D G +E +++ + RAL+ G K EL A Sbjct: 1351 GAVWVDSGSLEECEKLIERVGILRYLDRALRDGVKILHPKEELGRVAQNNKVVYKVDKAK 1410 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGIW 226 + Y+V+ D F V + A+ G SK A AA EV++ +W Sbjct: 1411 RAARAEVYEVSGELAEGEDVEFLCSVTVGDRCVARVGGAVSKNDAMTKAALEVIR---VW 1467 Score = 85.5 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 15/136 (11%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F + L+ +T SS +YER+EFLGD +L L + + EG LS+ + Sbjct: 1002 FKDIDLVMMVITSSSAGRLT--NYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLLKD 1059 Query: 77 SLVSAETCSQVARELDLASFIR------------VSSDLRKDVCSFMTS-IQADVVESLI 123 LVS + A L L FI +++ M+S ADV E+LI Sbjct: 1060 RLVSNSRLCKAATALGLDQFIITRQYSLKQWRNMLTAPEPPTNTRKMSSKTLADVTEALI 1119 Query: 124 AALYLDGGIEVAGTFV 139 A Y++GG+ A + Sbjct: 1120 GAAYIEGGMSKALRCI 1135 >gi|145612483|ref|XP_367242.2| hypothetical protein MGG_12357 [Magnaporthe oryzae 70-15] gi|145019642|gb|EDK03870.1| hypothetical protein MGG_12357 [Magnaporthe oryzae 70-15] Length = 1386 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 111/300 (37%), Gaps = 85/300 (28%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+ +GY+F +SLL +A+TH+S + S S ERLEFLGD +L ++ LF+ D A Sbjct: 1072 LEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPA 1131 Query: 67 KEGE--LSVRFNSLVSAETCSQVARE-----------------------------LDLAS 95 + + ++V+ E +A E L L Sbjct: 1132 PIEHYNMHLLRTAVVNGEFLGFLAMEWRTAATQRSVVVRTGQGTADELETVETPGLPLFG 1191 Query: 96 FIRVSSD---------------LRKDVCS-----------------FMTSIQADVVESLI 123 F+R ++ ++ + +DV+E++I Sbjct: 1192 FLRHNASGDWVRDQQLAEERHAEMAPGIRDALEHGQRYPWDLLARLRISKVHSDVLEAVI 1251 Query: 124 AALYLDGG-IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAH-----------A 167 A+++D G +E +++ + RAL+ G K EL A Sbjct: 1252 GAVWVDSGSLEECEKLIERVGILRYLDRALRDGVKILHPKEELGRVAQNNKVVYKVDKAK 1311 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGIW 226 + Y+V+ D F V + A+ G SK A AA EV++ +W Sbjct: 1312 RAARAEVYEVSGELAEGEDVEFLCSVTVGDRCVARVGGAVSKNDAMTKAALEVIR---VW 1368 Score = 85.5 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 15/136 (11%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F + L+ +T SS +YER+EFLGD +L L + + EG LS+ + Sbjct: 903 FKDIDLVMMVITSSSAGRLT--NYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLLKD 960 Query: 77 SLVSAETCSQVARELDLASFIR------------VSSDLRKDVCSFMTS-IQADVVESLI 123 LVS + A L L FI +++ M+S ADV E+LI Sbjct: 961 RLVSNSRLCKAATALGLDQFIITRQYSLKQWRNMLTAPEPPTNTRKMSSKTLADVTEALI 1020 Query: 124 AALYLDGGIEVAGTFV 139 A Y++GG+ A + Sbjct: 1021 GAAYIEGGMSKALRCI 1036 >gi|158706448|sp|Q0UI93|DCL1_PHANO RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease DCL1; Includes: RecName: Full=ATP-dependent helicase DCL1 Length = 1522 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 84/255 (32%), Gaps = 39/255 (15%) Query: 7 STLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E + Y F LL A H S SY+RLEFLGD +L + LF + Sbjct: 1223 HKIEMKHPYRFRYPRLLRSAFIHPSQPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYKYP 1282 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLRKDVC 108 L+ +VS + V +L + ++ V R+ Sbjct: 1283 DKDPQWLTEHKTPMVSNKFLGAVCVKLGWHTHMKQNTAILSSQIRDYVYEVEEAEREANG 1342 Query: 109 --------SFMTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKS------GK 152 S ADV+E+ +AA+++D V F D + K L Sbjct: 1343 AVDYWVSVSEPPKCLADVIEAFVAAIFVDSEFDFNVVQKFFDLHLKPFFLDMTLDAYENF 1402 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKV----TFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 T L FG + E+++ T P +V I + S Sbjct: 1403 ASNHPTTRLSRLLSINFGCS-EWRMGALETETLIPGKGKAIAAMVMIHDKVHFHSLGQSG 1461 Query: 209 RAAEQVAAAEVLKRE 223 R A A+ L++ Sbjct: 1462 RYARVRASHAALEKL 1476 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 49/146 (33%), Gaps = 37/146 (25%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +L +ALT S +YERLEFLGD L + S +F Sbjct: 1018 PALALEALTKDSDNSEEHGEEKINFKSGMGPNYERLEFLGDCFLKVATSLSVFVQQPEEN 1077 Query: 68 EGELSVRFNSLVSAETCSQVAR-ELDLASFIRV-----------------SSDLRKD--- 106 E E VR ++ + + A + L ++R L+K Sbjct: 1078 EFEFHVRRMLMLCNQNLMETAVGKKKLYKYVRTDAFSRRNWYPEGLKLLRGKGLKKTEED 1137 Query: 107 ----VCSFMTSIQADVVESLIAALYL 128 + ADV E+ I A ++ Sbjct: 1138 WLNVTHNLGDKSVADVCEAFIGAAFM 1163 >gi|167046022|gb|ABZ10542.1| dicer-like protein B [Placozoa sp. DMJ-2008] Length = 357 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 39/178 (21%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIST 57 +A LE +GY+F +R LL ALTH++ +H E Y+RLEFLGD IL ++ Sbjct: 180 NAHNLKDLEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAILQYIVVR 239 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-------------------- 97 ++ ++ K +L + + E+ + + + + Sbjct: 240 HCYHANNNYKPADLHDFVEASLQNESLAAMTMVYGIHKYFFYNSPSLFSQINQLLQIVDT 299 Query: 98 ------RVSSDLRKDV-------CSFMTSIQADVVESLIAALYLDGG--IEVAGTFVD 140 R+S++ + V + D+ ESLI A+++D G IEV V Sbjct: 300 NEECEQRLSTEEKALVYSNSLKDGVMIPKPLGDLFESLIGAIFIDCGRSIEVVNDLVL 357 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 KALT + + + + E LEFLG L +S F + EG+LS + +VS E Sbjct: 2 KALTLARANDDF--NLETLEFLGGSYLKYAVSISFFLSYSKFHEGQLSSLKSKIVSNENL 59 Query: 85 SQVARELDLASFIR 98 Q+ ++ L +I Sbjct: 60 YQIGIKMGLPGYII 73 >gi|167046020|gb|ABZ10541.1| dicer-like protein B [Trichoplax adhaerens] Length = 357 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 39/178 (21%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIST 57 +A LE +GY+F +R LL ALTH++ +H E Y+RLEFLGD IL ++ Sbjct: 180 NAHNLKDLEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAILQYIVVR 239 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-------------------- 97 ++ ++ K +L + + E+ + + + + Sbjct: 240 HCYHANNNYKPADLHDFVEASLQNESLAVMTMVYGIHKYFFYNSPSLFSQINQLLQIVDT 299 Query: 98 ------RVSSDLRKDV-------CSFMTSIQADVVESLIAALYLDGG--IEVAGTFVD 140 R+S++ + V + D+ ESLI A+++D G IEV V Sbjct: 300 NEECEQRLSTEEKALVYSNSLKDGVMIPKPLGDLFESLIGAIFIDCGRSIEVVNDLVL 357 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 KALT + + + + E LEFLGD L +S F + EG+LS + +VS E Sbjct: 2 KALTLARANDDF--NLETLEFLGDSYLKYAVSISFFLSYSKFHEGQLSSLKSKIVSNENL 59 Query: 85 SQVARELDLASFIR 98 Q+ ++ L +I Sbjct: 60 YQIGIKMGLPGYII 73 >gi|156845983|ref|XP_001645880.1| hypothetical protein Kpol_1045p6 [Vanderwaltozyma polyspora DSM 70294] gi|156116550|gb|EDO18022.1| hypothetical protein Kpol_1045p6 [Vanderwaltozyma polyspora DSM 70294] Length = 478 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 54/236 (22%), Positives = 86/236 (36%), Gaps = 28/236 (11%) Query: 16 AFANRSLLEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + S+ K H S S ERLEFLGD +L +++ +++N F + Sbjct: 192 EIKDPSIRAKVFIHKSTIKDKLYLKESEMINAHNERLEFLGDSVLNTIMTMIIYNKFPTF 251 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLI 123 EG+LS +LVS E + ++ + DL D F + ADV E+ I Sbjct: 252 TEGQLSKLRMNLVSNERIKSWTYLYNFDKKLKTNFDLGNDKSHFQNGKQKLYADVFEAYI 311 Query: 124 AALYLD---GGIEVAGTFVDKYWKQRALK----------SGKFRRDAKTELQEWAHAKFG 170 L D + ++ K K + + +AK +L Sbjct: 312 GGLIEDDPKHNMPKVRKWLTKLSKPIINEVMQKDVSLETTENIDLNAKRQLYSII-GYAA 370 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + Y+ R D DP V I G G + + A AA VL+ + + Sbjct: 371 LNLHYEPVKRPTRD-DPISIVECRIDDGTVLGVGKGRNVKIAGLCAAQNVLRNKSL 425 >gi|224613107|dbj|BAH24216.1| dsRNA-specific ribonuclease RNaseIII [Onion yellows phytoplasma] Length = 149 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 3/118 (2%) Query: 90 ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 ++L +++ + K+ SI AD E+L A+YLD G A L Sbjct: 1 NIELQNYLLLGKGE-KNKDFNAKSIMADTFEALFGAIYLDLGYLTAKKVFHNIVLPH-LA 58 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + D KT+LQE ++ T +YK+ GP H F V + G + Sbjct: 59 KTIYIIDFKTQLQEIVQSEKK-TIQYKIVQEQGPAHSKNFVAEVYLEKNLLGTGEGST 115 >gi|241061224|ref|XP_002408099.1| dicer-1, putative [Ixodes scapularis] gi|215492368|gb|EEC02009.1| dicer-1, putative [Ixodes scapularis] Length = 1348 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +E+ +GY F +RS L +A+TH+S + + Y+RLEFLGD ++ L++ L+ Sbjct: 1066 VADVERALGYTFVDRSFLLQAVTHASYYRNRLTDCYQRLEFLGDAVIDYLVTRYLYELPR 1125 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM 111 G+L+ +SLV+ + + + L + + L + F+ Sbjct: 1126 KFNPGQLTDLRSSLVNNTFFASLVVKYGLHGCFKHCNPSLFSAIGRFV 1173 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 26/121 (21%) Query: 111 MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + D+ ESL+ A++LD G+ + + + + Q ++ Sbjct: 1237 VPKALGDLFESLMGAVFLDCGMSLDRVWRIIYRMFGQEIES--------------FSQ-N 1281 Query: 169 FGVTPEYKVTF-----RSGPD---HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V P ++T R GP + + V + ++G + + +K+ A+ A + L Sbjct: 1282 VPVPPVKELTERFRDARFGPAELLGNNKVKVQLTVTGKTFSC-VAKNKKLAKMALAKKCL 1340 Query: 221 K 221 + Sbjct: 1341 R 1341 >gi|78126079|dbj|BAE47000.1| ribonuclease III [Ehrlichia ruminantium] Length = 92 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 51/92 (55%) Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 ++A+ ++L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +W Sbjct: 1 LVEIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFW 60 Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 K A +DAKT LQEWA +K P Y Sbjct: 61 KNSATHMKVPPQDAKTILQEWAQSKGFPAPSY 92 >gi|145612491|ref|XP_001412113.1| hypothetical protein MGG_07167 [Magnaporthe oryzae 70-15] gi|145019646|gb|EDK03874.1| hypothetical protein MGG_07167 [Magnaporthe oryzae 70-15] Length = 819 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 111/300 (37%), Gaps = 85/300 (28%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+ +GY+F +SLL +A+TH+S + S S ERLEFLGD +L ++ LF+ D A Sbjct: 505 LEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPA 564 Query: 67 KEGE--LSVRFNSLVSAETCSQVARE-----------------------------LDLAS 95 + + ++V+ E +A E L L Sbjct: 565 PIEHYNMHLLRTAVVNGEFLGFLAMEWRTAATQRSVVVRTGQGTADELETVETPGLPLFG 624 Query: 96 FIRVSSD---------------LRKDVCS-----------------FMTSIQADVVESLI 123 F+R ++ ++ + +DV+E++I Sbjct: 625 FLRHNASGDWVRDQQLAEERHAEMAPGIRDALEHGQRYPWDLLARLRISKVHSDVLEAVI 684 Query: 124 AALYLDGG-IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAH-----------A 167 A+++D G +E +++ + RAL+ G K EL A Sbjct: 685 GAVWVDSGSLEECEKLIERVGILRYLDRALRDGVKILHPKEELGRVAQNNKVVYKVDKAK 744 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGIW 226 + Y+V+ D F V + A+ G SK A AA EV++ +W Sbjct: 745 RAARAEVYEVSGELAEGEDVEFLCSVTVGDRCVARVGGAVSKNDAMTKAALEVIR---VW 801 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 15/136 (11%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F + L+ +T SS +YER+EFLGD +L L + + EG LS+ + Sbjct: 336 FKDIDLVMMVITSSSAGRLT--NYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLLKD 393 Query: 77 SLVSAETCSQVARELDLASFIR------------VSSDLRKDVCSFMTS-IQADVVESLI 123 LVS + A L L FI +++ M+S ADV E+LI Sbjct: 394 RLVSNSRLCKAATALGLDQFIITRQYSLKQWRNMLTAPEPPTNTRKMSSKTLADVTEALI 453 Query: 124 AALYLDGGIEVAGTFV 139 A Y++GG+ A + Sbjct: 454 GAAYIEGGMSKALRCI 469 >gi|320586295|gb|EFW98974.1| nucleolar rnase [Grosmannia clavigera kw1407] Length = 372 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 78/242 (32%), Gaps = 46/242 (19%) Query: 24 EKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 + ALTH + SYE EFLGD + L S + F G S L+ Sbjct: 102 KMALTHQGMVEKNWHRSYEVFEFLGDAFIYHLASEYISQTFPLLSPGRCSQIRERLLRNS 161 Query: 83 TCSQVARELDLASFIRVS---SDLRKDVCSF-----MTSIQADVVESLIAALYLD--GGI 132 S + L ++ +D S + D+ E+ + AL G+ Sbjct: 162 NLSLYSLHYGLDKRAKLPAEFKGEGRDGGSRARLEQRNKMYGDLFEAYVGALIRSDPQGV 221 Query: 133 EVAGTFVDKYWK---QRALKSGKFRRD-----------------------AKTELQEWAH 166 E A ++ + W ++ ++ RRD K +L + Sbjct: 222 ERAQKWLKRLWALTIEKDIREEYQRRDKERARNPSLESSATGPEHTSERPPKLKLIDLI- 280 Query: 167 AKFGVTPEYK---VTFRSGPD-HDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAE 218 V Y+ R D P F + + + G G SK+ A AA + Sbjct: 281 GCKLVKIRYEDAPCKPRKCKDTGLPLFVIDLWVDGWGKSECLGHGSGLSKKDAGSNAAQQ 340 Query: 219 VL 220 L Sbjct: 341 AL 342 >gi|300868242|ref|ZP_07112873.1| hypothetical protein OSCI_3600020 [Oscillatoria sp. PCC 6506] gi|300333766|emb|CBN58057.1| hypothetical protein OSCI_3600020 [Oscillatoria sp. PCC 6506] Length = 328 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 59/170 (34%), Gaps = 11/170 (6%) Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 S E S L L + + S ++ + +E L Sbjct: 155 HPSVSSAEESRIREKLAEILKLLPFQNACLLNTALTHRSYFYENPKYVRED--NERLEFL 212 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--------RRDAKTELQEWAHAKFG-VTP 173 A++LD GI+ F++ +++ + F D+K QEW A P Sbjct: 213 GDAVFLDSGIDSVREFIEPLFEKAIKEPAAFNFNLESKNFVDSKNRFQEWVQANSDNTPP 272 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +Y G H P + V + +G SK+ AE+ AA + L R Sbjct: 273 KYVTIHAGGAPHKPEYLAKVYVGEKLYGEGKGSSKKEAEKNAAEDALARL 322 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRIL 51 + + + K + F N LL ALTH S + +E ERLEFLGD + Sbjct: 168 EKLAEILKLL--PFQNACLLNTALTHRSYFYENPKYVREDNERLEFLGDAVF 217 >gi|224613114|dbj|BAH24222.1| dsRNA-specific ribonuclease RNaseIII [Mulberry dwarf phytoplasma] Length = 157 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 3/126 (2%) Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 + A+ ++L +++ + K+ SI AD E+L A+YLD G A Sbjct: 1 RSLIIYAQNIELQNYLLLGKGE-KNKDFNAKSIMADTFEALFGAIYLDLGYLTAKKVFHN 59 Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 L + D KT+LQE ++ T +YK+ G H F V + Sbjct: 60 IVLPH-LAKTIYIIDFKTQLQEIVQSEKK-TIQYKIVQEQGFAHSKNFVAEVYLEKNLLG 117 Query: 202 QGMDCS 207 G + Sbjct: 118 TGEGNT 123 >gi|167046024|gb|ABZ10543.1| dicer-like protein C [Trichoplax adhaerens] Length = 358 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 35/167 (20%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNH 62 LEK IGY+F N+ + +ALTHSS H ES ++LEFLGD IL +I+ FN Sbjct: 187 NLERLEKVIGYSFQNKLFMIRALTHSSYHHHDIAIESNQKLEFLGDTILQYIIARHFFNS 246 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF----------- 110 AK +L ++V+ + + + + ++ ++ + S DL +D+ F Sbjct: 247 HPDAKPAKLHDFQEAIVNNKCLAVIGIAIGVSKYVFQESPDLFRDIDQFAKIITCDYMID 306 Query: 111 ---------------------MTSIQADVVESLIAALYLDGGIEVAG 136 + +DVVE+LI A+Y+D G +A Sbjct: 307 DEMNYNDRTEALFENFTEEVKIPKPVSDVVEALIGAIYIDTGESIAE 353 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +ALT + S ERLEFLGD L +I+ LF EG+L+ +V + Sbjct: 1 LLEALTLAEAEDDI--SLERLEFLGDSFLKFIIAANLFISHPKYHEGQLTNELTKIVRND 58 Query: 83 TCSQVARELDLASFIR 98 ++ + + +I Sbjct: 59 NLLKLGKSTPICEYII 74 >gi|326428784|gb|EGD74354.1| hypothetical protein PTSG_06363 [Salpingoeca sp. ATCC 50818] Length = 333 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 70/230 (30%), Gaps = 29/230 (12%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L R G F + LL +ALTH + RL LG+ +L + L+ +F Sbjct: 52 EIRALAARTGEKFKDEKLLLQALTHRTY--DGYAHNGRLSLLGETVLSQSVVEHLYFNFP 109 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC--------SFMTSIQA 116 + + + +SA+ + R+L + + + Sbjct: 110 NLYSTAIKSVRDRFLSADVLGPIGRKLGFQDALLYKHAEEGEAVKAAKPFEHNKRAKYHV 169 Query: 117 D--------------VVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAK 158 D ++ + ALY+D G FV + L + Sbjct: 170 DPVPPQKIPASAVAAAFKAFVGALYVDQGALQAKRYVKDFVVHTLENSDLSEFIKLEHPR 229 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPD-HDPRFTVVVEISGLAPAQGMDCS 207 LQ A Y+V SG H P F V V A G S Sbjct: 230 RVLQRLHAASGREPLAYRVIEESGRATHMPTFLVGVFAGNQKLATGAGYS 279 >gi|85105148|ref|XP_961898.1| hypothetical protein NCU08270 [Neurospora crassa OR74A] gi|74616659|sp|Q7S8J7|DCL1_NEUCR RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl-1; Includes: RecName: Full=ATP-dependent helicase dcl-1 gi|28923482|gb|EAA32662.1| predicted protein [Neurospora crassa OR74A] Length = 1584 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 73/200 (36%), Gaps = 47/200 (23%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +R+GY F + LL A H + + SY+RLEFLGD + ++ LF F Sbjct: 1259 KKFSERMGYKFKHPRLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFP 1318 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSI--------- 114 +A L+ ++VS + ++ L I +S + KD+ ++T I Sbjct: 1319 AADPQWLTEHKMAMVSNQFLCCLSFHLGFNKCIATMSPSILKDIAEYVTEIEEALETAKQ 1378 Query: 115 -----------------------------QADVVESLIAALYLDG--GIEVAGTF----V 139 +DVVE+ I A+++D V F V Sbjct: 1379 EAINAGKTADEYSRDYWVHITHASRLPKCLSDVVEAYIGAIFVDSEYDYSVVQNFFNMHV 1438 Query: 140 DKYWKQRALKSGKFRRDAKT 159 +++ L + T Sbjct: 1439 LPFFEDMHLYDTFANKHPVT 1458 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 57/170 (33%), Gaps = 35/170 (20%) Query: 11 KRIGYAFANRSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTL 58 K +G L +A T S ++YERLEFLGD L + + Sbjct: 1058 KLLGLDLR-PDLALEAFTKDSDNSDEHDAEKENFQTGMGDNYERLEFLGDSFLKMATTIA 1116 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDL 103 ++ E E V L+ + A E+ L +IR + Sbjct: 1117 IYTLIPDKGEFEYHVERMLLICNKNLFNNALEIGLEEYIRSMSFNRRQWYPEGLILKKGK 1176 Query: 104 RKDVCSFM---TSIQADVVESLIAALYLD----GGIEVAGTFVDKYWKQR 146 KD ADV E+LI A YL G ++A V K + Sbjct: 1177 SKDARQRHVLADKSIADVCEALIGAAYLTGQEKGSFDMAIKAVTAMVKDK 1226 >gi|119487463|ref|XP_001262524.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181] gi|158705692|sp|A1D9Z6|DCL2_NEOFI RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl2; Includes: RecName: Full=ATP-dependent helicase dcl2 gi|119410681|gb|EAW20627.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181] Length = 1388 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 59/280 (21%), Positives = 108/280 (38%), Gaps = 69/280 (24%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L+ IGY F + SLL +ALTH S + S +SY+RLE+LGD +L ++I + +FNH Sbjct: 1099 ERLKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHPIQ 1158 Query: 66 AKEGELSVRFNSLVSAETCSQVARE--------------------------LDLASFIR- 98 +G+++ +++V+A + + E ++L F+R Sbjct: 1159 RPQGDMTKIKHAVVNANLLAFLCMESATSEEKLDVAQTSKDSFAVTTSQESVELWRFMRY 1218 Query: 99 ----VSSDLRKDVCSFM--------------------------TSIQADVVESLIAALYL 128 +++ + +D+VES++ A+++ Sbjct: 1219 RGQNLNAARDASLARHRALRDEIASSLLHAPHYPWHALSRLNADKFFSDIVESVLGAIFV 1278 Query: 129 DGG--IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 D G + FV++ + +R L R ++ Q+ A + +V G Sbjct: 1279 DSGGDLAPCEVFVERIGLMAYLRRILDQEIDVRHPRSVAQQLAKTNIQFVLQ-RVPNEEG 1337 Query: 183 PDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221 + V I C + AE AA E +K Sbjct: 1338 GA---SYQCSVRIEQAELFVVTGCLTAEEAEVTAAVEAIK 1374 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 15/131 (11%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97 +Y+R EFLGD IL +S LF + EG LS +V ++ A + L ++I Sbjct: 952 NYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGRAMIVQNPRLAKAALDTGLDAYIV 1011 Query: 98 ------------RVSSDLRKDVCSF--MTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 +S L + T + ADVVE+LI A Y+DGG A + + Sbjct: 1012 TKRIASRKWSAPLISEKLERVPAKRQMSTKVLADVVEALIGAAYMDGGHATAQACIRRLL 1071 Query: 144 KQRALKSGKFR 154 + L + R Sbjct: 1072 PEINLHAVDTR 1082 >gi|328770756|gb|EGF80797.1| hypothetical protein BATDEDRAFT_24696 [Batrachochytrium dendrobatidis JAM81] Length = 1641 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 103/264 (39%), Gaps = 54/264 (20%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E++IGY F +++LL +ALTH S + ++RLEFLGD +L L L+ Sbjct: 1290 KQIEEQIGYTFRDKTLLWEALTH-SGTGKLGSMFQRLEFLGDAVLSYLAMQHLYKITPPL 1348 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRV--------------------------- 99 G LS LV + + V+ ++ L +IR Sbjct: 1349 NPGGLSKLRAELVCNQFLACVSIQIGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTP 1408 Query: 100 -----------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG-------TFVDK 141 S+ L + + DV ES++ A+++D ++ T + Sbjct: 1409 LPISTSATQIASARLFWNKGNTAPKTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVISP 1468 Query: 142 YWKQRALKSGKFRR---DAKTELQEWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISG 197 +W + G + EL+ +++ F V +Y T+ G H T + Sbjct: 1469 WWWRFTSLFGGESMIYENPVAELRTLSYSLFKCVKIDY--TYEYGL-HGGT-TATITYHN 1524 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221 + AQ + +R A++ AA ++ Sbjct: 1525 MVLAQCLGTGQRDAKKAAACTAVE 1548 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 58/154 (37%), Gaps = 13/154 (8%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ A T S + + SYERLE LGD L + S LF EG ++ + + Sbjct: 1118 PKLLQIATT--SSASNMGYSYERLETLGDSFLKIHQSLHLFCRNPFKNEGWMTQQRIKIE 1175 Query: 80 SAETCSQVARELDLASFIRVSSDLRKD----------VCSFMTSIQADVVESLIAALYLD 129 + Q A + L FI +++ A +E++I A + Sbjct: 1176 KNQVLHQKALDAGLQHFILTKPLTKRNWVPPAKNIRLNQEISNKTLAGSIEAVIGACVEE 1235 Query: 130 GGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQ 162 GG+E A V + + D T +Q Sbjct: 1236 GGVEQAALAVSRLLSDEYETDWSNYHHDLYTSIQ 1269 >gi|115387529|ref|XP_001211270.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114195354|gb|EAU37054.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 1344 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+++GY F LL A TH S + + Y+ LEFLGD +L ++ LF F Sbjct: 1211 RVEEKLGYHFRYPRLLHSAFTHPSYPSAWARVPCYQSLEFLGDALLDMVCVEDLFRRFPD 1270 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFI 97 L+ ++VS + +A +L L + + Sbjct: 1271 RDPQWLTEHKMAMVSNKFLGALAVKLGLHTHL 1302 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 63/191 (32%), Gaps = 48/191 (25%) Query: 11 KRIGYAFANRSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTL 58 K++G + +ALT H S + ++YERLEFLGD L + S Sbjct: 1005 KKLGLEIS-LEYALEALTKDSDNTHEHRSQQVHMQRGMGKNYERLEFLGDCFLKMATSIS 1063 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-----------------SS 101 LFN E + V L+ A + +L FIR Sbjct: 1064 LFNQHPDDNEFDYHVNRMCLICNRNLFNSAVKKELYQFIRSRGFSRDTWYPEGLTLLQGR 1123 Query: 102 DLRKDVCSFM-----TSIQADVVESLIAALYL--------DGGIEVAGTFVDKYWKQRAL 148 D K + S ADV E+LI A L D G+ VD Sbjct: 1124 DHSKKIGSESKHALAEKTIADVCEALIGAALLTPGPQHRFDMGVRAVSAVVDS-----NE 1178 Query: 149 KSGKFRRDAKT 159 + RD + Sbjct: 1179 HNAASWRDYIS 1189 >gi|154282055|ref|XP_001541840.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150412019|gb|EDN07407.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 1437 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 48/264 (18%), Positives = 92/264 (34%), Gaps = 66/264 (25%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY F + L +A TH S S SY+RLEF+GD IL +I LFN + Sbjct: 1097 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVHHLFNAPRA 1156 Query: 66 AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99 ++ + +L +A+ + + R++ L ++R Sbjct: 1157 LPHFDMHLMRTALANADFLAFLCIGMSTERVRGEIAECSKENTSTKLTTRKVSLWQYMRH 1216 Query: 100 SSDLRKDVCSFMTSIQ--------------------------------ADVVESLIAALY 127 + T+ Q +D++ES++ A++ Sbjct: 1217 GTSWELTAAQQQTANQYQTLQADISEALEKSHTYPWTLLSRFHPQKFFSDLIESVLGAIF 1276 Query: 128 LD--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTEL-QEWAHAKFGVTPEYKVTF 179 +D G ++ F+++ + ++ + K L QE K E+ V Sbjct: 1277 IDSHGSLDACTAFLERIGLMKFLRRMLVDEDMDLMHPKQRLGQEVGTRKVRYEAEHVVDE 1336 Query: 180 RSGPDHDPRFTVVVEISGLAPAQG 203 G +T V + + Sbjct: 1337 EGGIGTLGYWTCKVFVGDECVVEA 1360 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 20/149 (13%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 AF + SL+ A++ +S++ +Y+R+EFLGD IL + L EG LS Sbjct: 922 IAFTDLSLVITAIS-ASVAREAT-NYQRIEFLGDSILKFQTTLQLTATNLIWHEGLLSRA 979 Query: 75 FNSLVSAETCSQVARELDLASFIRVS-----------------SDLRKDVCSFM-TSIQA 116 +++VS + S A E L FI + S+ + M T A Sbjct: 980 KDTVVSNKRLSYAAIEAGLDKFILLDVFTGAKWRPPYNKDHLESEEQGVAQREMSTKTLA 1039 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 DVVE+L+AA LDGG A ++ + + Sbjct: 1040 DVVEALLAAATLDGGQRKAEKCLEIFLPE 1068 >gi|121714731|ref|XP_001274976.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1] gi|158706439|sp|A1C9M6|DCL2_ASPCL RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl2; Includes: RecName: Full=ATP-dependent helicase dcl2 gi|119403130|gb|EAW13550.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1] Length = 1389 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 57/281 (20%), Positives = 104/281 (37%), Gaps = 71/281 (25%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFD 64 + L++ I Y F N SLL +ALTH S + +SY+RLEFLGD +L ++I + +FNH Sbjct: 1099 HDRLKRHISYTFENESLLVEALTHPSCDYDASTQSYQRLEFLGDAVLDMIIVSAIFNHPV 1158 Query: 65 SAKEGELSVRFNSLVSAETCSQVAREL--------------------------DLASFIR 98 +G ++ ++LV+A + + E +L F+R Sbjct: 1159 QMPQGHMTKIKHALVNANLLAFLCMEFAIPEERASVEQISTLQFEVISNEELVELWRFMR 1218 Query: 99 VSSDLRKDVCSF---------MTSIQ-----------------------ADVVESLIAAL 126 L + I +D++ES++ A+ Sbjct: 1219 Y-RGLDLNNARDASLARHRALRDEILHSLQHDPHYPWQALSRLSADKFFSDIMESILGAI 1277 Query: 127 YLDGG--IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++D G + FV++ + +R L + Q+ A + + ++ Sbjct: 1278 FVDSGGDLAPCEAFVERIGLMSYLRRILDENIEVTHPRNVAQQLAKSNIQFLAQ-RMPDE 1336 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVL 220 G + V I + C + AE AA + + Sbjct: 1337 EGGA---SYQCAVRIEEVEAFVVRGCLTAEEAEVTAAIDAI 1374 Score = 88.2 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 19/160 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y T+ + +G F + + A++ S +Y+R EFLGD IL +S LF + Sbjct: 924 YETILRDVG--FTSTQHIITAISAPSA--QALTNYQRYEFLGDSILKFSVSCQLFFKHPN 979 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSF-- 110 EG LS + +V ++ A + L +F+ +S L + Sbjct: 980 WHEGYLSEGRDEIVQNPRLTKAALDTGLDAFVITKMFTPRKWSAPLISERLERVAGKRQV 1039 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 + + ADVVE+LI A Y+DGG A + ++ + L S Sbjct: 1040 SSKVLADVVEALIGAAYMDGGHAAAQACIRRFLPEINLHS 1079 >gi|298711900|emb|CBJ48587.1| dicer-like 3 [Ectocarpus siliculosus] Length = 1557 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 22/161 (13%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS-------YQESYERLEFLGDRILGL 53 M +R LEKR+GY F L +A+TH S + + + Y+RLEFLGD +LG Sbjct: 1318 MGNIRL--LEKRLGYTFRYPWLCMQAITHPSWTINDIPPGTVPAQDYQRLEFLGDAVLGW 1375 Query: 54 LISTLLFNHFDSAKEGELSVRF--NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +++ L+ + EL+ +S V + +A LD+ +R S + + +F+ Sbjct: 1376 MVTAHLYFASSAFTPAELTRIKVTSSCVCNASLWVIALRLDVHHVLRASPKILGHIHAFI 1435 Query: 112 TSIQ-----------ADVVESLIAALYLDGGIEVAGTFVDK 141 + ADV+E+LI A+++D + + + + Sbjct: 1436 ENNGVSGTGTAPKHPADVLEALIGAVFIDSSCCMNASLLLE 1476 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 58/162 (35%), Gaps = 26/162 (16%) Query: 5 RYSTLEKRIGYAFANRSLLEKAL-T---HS-------SISHSYQESYERLEFLGDRILGL 53 R LE+++ + SL AL T H S + ERLE LGD L Sbjct: 1118 RMFDLERQLLCFVLHESLFLPALQTSLYHRNPPGADKSSNDKLLPVNERLETLGDAWLNY 1177 Query: 54 LISTLLFNHFD-SAKEGELSVRFNSLVSAETCSQVARELDLASFI-----RVSSDLRKDV 107 ++F +EG +++ ++VS + A L F+ + Sbjct: 1178 YAGFVVFQDKPVLMEEGMMTLLRKNVVSNARLLKCADGRGLREFMYPPRSILGRPFDMWS 1237 Query: 108 CSF---------MTSIQADVVESLIAALYLDGGIEVAGTFVD 140 S ADVVE+L+ A + GG A ++ Sbjct: 1238 PSLLPLPPPVKASKKTIADVVEALLGAALVAGGNRSAAYIME 1279 >gi|50294317|ref|XP_449570.1| hypothetical protein [Candida glabrata CBS 138] gi|49528884|emb|CAG62546.1| unnamed protein product [Candida glabrata] Length = 449 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 27/233 (11%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 + + + H S+ + + + ERLEFLGD IL +++ +++N F S Sbjct: 181 EIKDHVIRARVFMHKSLVNDKVYLNESDIIKSNNERLEFLGDSILNTVMTMIIYNKFPSL 240 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ LV ET + + +L ++ + D+ + TS AD+ E+ I L Sbjct: 241 NEGNLTELRKKLVKNETLREWSELYELPKQLKSNLSPDVDLSTSKTS--ADIFEAYIGGL 298 Query: 127 YLD---GGIEVAGTFVDKYWKQRALKS----------GKFRRDAKTELQEWAHAKFGVTP 173 D + ++ K K + ++ +AK +L + Sbjct: 299 MEDDPKTNLVKIRKWLKKLAKPKIEEAMKTSIQLEPTNNLDMNAKRKLYSLI-GYAALKL 357 Query: 174 EYKVTFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 Y R + +P V G G + + A AA +VL++E + Sbjct: 358 HYHTVQRPTNE-NPVTIVQCRTGDGTILGVGKARNIKLAGVKAAEDVLRKEDV 409 >gi|158706446|sp|Q4WA22|DCL2_ASPFU RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl2; Includes: RecName: Full=ATP-dependent helicase dcl2 Length = 1388 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 59/279 (21%), Positives = 108/279 (38%), Gaps = 69/279 (24%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L+ IGY F + SLL +ALTH S + S +SY+RLE+LGD +L ++I + +FNH Sbjct: 1100 RLKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHRIQR 1159 Query: 67 KEGELSVRFNSLVSAETCSQVAREL--------------------------DLASFIRV- 99 +G+++ +++V+A + + E +L F+R Sbjct: 1160 PQGDMTKIKHAVVNANLLAFLCMEFAISEEKLDVAQTSKDSFAVTSSQESVELWRFMRYR 1219 Query: 100 SSDLR----KDVCSFM--------------------------TSIQADVVESLIAALYLD 129 L+ + +D++ES++ A+++D Sbjct: 1220 GQGLKAARDASLARHRALRDEIASSLLQAPHYPWHALSRLNADKFFSDIIESVLGAIFVD 1279 Query: 130 GG--IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 G + FV++ + +R L G R ++ +Q+ A + T G Sbjct: 1280 SGGNLAPCEVFVEQIGLMAYLRRILDHGIDVRHPRSVVQQLAKTNIQFVLQRVPTEEGGA 1339 Query: 184 DHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221 + V++ C + AE AA E +K Sbjct: 1340 S----YQCSVQMEQAELFVVTGCLTAEEAEVTAAVEAIK 1374 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 17/155 (10%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 +F + + A+ S+ +Y+R EFLGD IL +S LF + EG LS Sbjct: 930 VSFKSTDHIITAI--STPLAHRLTNYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEG 987 Query: 75 FNSLVSAETCSQVARELDLASFI---RVSS------------DLRKDVCSFMTSIQADVV 119 + +V ++ A + L ++I R++S T + ADVV Sbjct: 988 RDMIVQNPRLAKAALDTGLDAYIVTKRLASRKWSAPLISEKLGRVPAKRQMSTKVLADVV 1047 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR 154 E+LI A Y+DGG A + ++ + L + R Sbjct: 1048 EALIGAAYVDGGHSTAQACIRRFLPEINLHAVDTR 1082 >gi|169849606|ref|XP_001831506.1| 60S ribosomal protein L3 [Coprinopsis cinerea okayama7#130] gi|116507458|gb|EAU90353.1| 60S ribosomal protein L3 [Coprinopsis cinerea okayama7#130] Length = 362 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 77/214 (35%), Gaps = 15/214 (7%) Query: 24 EKALTHSSISHSYQESYER----------LEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 +A TH S +++ Y R L G+ ++GL L + Sbjct: 79 RQACTHPSFIDVWRQHYPREKRIPKDNAQLSVFGNSLMGLFAMEYLTTKYPYLPTRIQKA 138 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS--FMTSIQADVVESLIAALYLDGG 131 + V TC+ VA EL +R + T A + ++ A +Y Sbjct: 139 VMTAHVGPNTCASVATELGADKLLRWHRTPQTPNAPAVLHTDALASIPRAMTALIYKKHS 198 Query: 132 IEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPR 188 + A FV Y+ R + + D K L+E H P+ ++ +G + P Sbjct: 199 LPSARQFVHSYFLSRQVDIRSMLKFLDPKKALKELVHKFGREPPKSRLLKETGRFSNTPV 258 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F V + +G S + AE AA + L+R Sbjct: 259 FVVGIFSGADQIGEGFGSSLKMAEFRAAEDALQR 292 >gi|70981901|ref|XP_746479.1| RNA helicase/RNAse III [Aspergillus fumigatus Af293] gi|66844102|gb|EAL84441.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus Af293] Length = 1384 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 59/279 (21%), Positives = 108/279 (38%), Gaps = 69/279 (24%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L+ IGY F + SLL +ALTH S + S +SY+RLE+LGD +L ++I + +FNH Sbjct: 1096 RLKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHRIQR 1155 Query: 67 KEGELSVRFNSLVSAETCSQVAREL--------------------------DLASFIRV- 99 +G+++ +++V+A + + E +L F+R Sbjct: 1156 PQGDMTKIKHAVVNANLLAFLCMEFAISEEKLDVAQTSKDSFAVTSSQESVELWRFMRYR 1215 Query: 100 SSDLR----KDVCSFM--------------------------TSIQADVVESLIAALYLD 129 L+ + +D++ES++ A+++D Sbjct: 1216 GQGLKAARDASLARHRALRDEIASSLLQAPHYPWHALSRLNADKFFSDIIESVLGAIFVD 1275 Query: 130 GG--IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 G + FV++ + +R L G R ++ +Q+ A + T G Sbjct: 1276 SGGNLAPCEVFVEQIGLMAYLRRILDHGIDVRHPRSVVQQLAKTNIQFVLQRVPTEEGGA 1335 Query: 184 DHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221 + V++ C + AE AA E +K Sbjct: 1336 S----YQCSVQMEQAELFVVTGCLTAEEAEVTAAVEAIK 1370 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 17/155 (10%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 +F + + A+ S+ +Y+R EFLGD IL +S LF + EG LS Sbjct: 926 VSFKSTDHIITAI--STPLAHRLTNYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEG 983 Query: 75 FNSLVSAETCSQVARELDLASFI---RVSS------------DLRKDVCSFMTSIQADVV 119 + +V ++ A + L ++I R++S T + ADVV Sbjct: 984 RDMIVQNPRLAKAALDTGLDAYIVTKRLASRKWSAPLISEKLGRVPAKRQMSTKVLADVV 1043 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR 154 E+LI A Y+DGG A + ++ + L + R Sbjct: 1044 EALIGAAYVDGGHSTAQACIRRFLPEINLHAVDTR 1078 >gi|159122296|gb|EDP47418.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus A1163] Length = 1384 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 59/279 (21%), Positives = 108/279 (38%), Gaps = 69/279 (24%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L+ IGY F + SLL +ALTH S + S +SY+RLE+LGD +L ++I + +FNH Sbjct: 1096 RLKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHRIQR 1155 Query: 67 KEGELSVRFNSLVSAETCSQVAREL--------------------------DLASFIRV- 99 +G+++ +++V+A + + E +L F+R Sbjct: 1156 PQGDMTKIKHAVVNANLLAFLCMEFAISEEKLDVAQTSKDSFAVTSSQESVELWRFMRYR 1215 Query: 100 SSDLR----KDVCSFM--------------------------TSIQADVVESLIAALYLD 129 L+ + +D++ES++ A+++D Sbjct: 1216 GQGLKAARDASLARHRALRDEIASSLLQAPHYPWHALSRLNADKFFSDIIESVLGAIFVD 1275 Query: 130 GG--IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 G + FV++ + +R L G R ++ +Q+ A + T G Sbjct: 1276 SGGNLAPCEVFVEQIGLMAYLRRILDHGIDVRHPRSVVQQLAKTNIQFVLQRVPTEEGGA 1335 Query: 184 DHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221 + V++ C + AE AA E +K Sbjct: 1336 S----YQCSVQMEQAELFVVTGCLTAEEAEVTAAVEAIK 1370 Score = 89.7 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 17/155 (10%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 +F + + A+ S+ +Y+R EFLGD IL +S LF + EG LS Sbjct: 926 VSFKSTDHIITAI--STPLAHRLTNYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEG 983 Query: 75 FNSLVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSF--MTSIQADVV 119 + +V ++ A + L ++I +S L + T + ADVV Sbjct: 984 RDMIVQNPRLAKAALDTGLDAYIVTKRLASRKWSAPLISEKLERVPAKRQMSTKVLADVV 1043 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR 154 E+LI A Y+DGG A + ++ + L + R Sbjct: 1044 EALIGAAYVDGGHSTAQACIRRFLPEINLHAVDTR 1078 >gi|156044530|ref|XP_001588821.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980] gi|154694757|gb|EDN94495.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1515 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 63/221 (28%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +E+ + Y F +SLL +A+TH S + Q S ERLEFLGD IL +I T ++++ Sbjct: 1179 PIALQPIEQILAYTFTKKSLLVEAMTHPSYINGTQ-SLERLEFLGDAILDNIIVTAMWSY 1237 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASF 96 ++ + ++LV+A+ + + R L +F Sbjct: 1238 ETELSHFQMHLLRSALVNADFLAFLCMEMSIEQYVTDLTEGKDHQIHETHTRRRFSLVNF 1297 Query: 97 IRVSSD--------LRKDVCSFMTSIQA-----------------------DVVESLIAA 125 +R SS I A D++ESL+ A Sbjct: 1298 LRHSSATFSIYQKQALARHQELREEILAVIKTGDKFPWTLLSRLDARKFFSDMIESLLGA 1357 Query: 126 LYLDGG-IEVAGTFVDK----YWKQRALKSGKFRRDAKTEL 161 +++D G I+V V++ + +R L+ G K EL Sbjct: 1358 IWIDSGSIDVCTRVVERMGILRYMRRILREGVRIMHPKEEL 1398 Score = 99.4 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 20/147 (13%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 ++R L++ A+TH+S S +Y+RLEFLGD IL L S L + + EG LS Sbjct: 1012 EISDRGLVQTAITHASYS--LTSNYQRLEFLGDSILKLCTSVQLISEYPLWPEGYLSAMK 1069 Query: 76 NSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFMTSIQADV 118 + +VS S+ A EL L +I + + +K + + +DV Sbjct: 1070 DRIVSNSRSSRAAVELGLDEYIITKKFTGSKWRPMYVEDYLKTTEQKSR-QMSSKVLSDV 1128 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQ 145 VE+LI A +DGGI A + ++ + Sbjct: 1129 VEALIGACMVDGGIPKALKSLQLFFPE 1155 >gi|310794641|gb|EFQ30102.1| RNase3 domain-containing protein [Glomerella graminicola M1.001] Length = 1447 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 61/293 (20%), Positives = 102/293 (34%), Gaps = 79/293 (26%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFD 64 LE IGY F ++LL +A+TH+S + ERLEF+GD +L ++ LF Sbjct: 1139 LEPLEHLIGYKFDRKTLLIQAMTHASFNLGNPFGCLERLEFMGDSVLDYVVVNRLFAVEP 1198 Query: 65 SAKEGELSVRFNSLVSAETCSQVARE--------------------------LDLASFIR 98 + + ++V+ + ++ E L L F+R Sbjct: 1199 PLPHQTMHLLKTAMVNGDFLGFLSLEQSIGQDEVVLGENTGKEPNLQHSRFSLPLWKFMR 1258 Query: 99 VSS---DLRKDVCSFM----------------------------TSIQADVVESLIAALY 127 S L + +D+ ESL+ A+Y Sbjct: 1259 HQSPAIGLEQINVHKRYTALRDQIIDSMERGKTYPWALLARIQLRKFYSDIFESLLGAVY 1318 Query: 128 LDGG-IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS- 181 +D G + V V+++ + R L+ G K +E H Y + R Sbjct: 1319 VDSGDLGVCARVVERFGITGYLDRILRDGVHVLHPK---EELGHLADKEKVTYVLNARQA 1375 Query: 182 GPD--HDPRFTVVVEISGLAPAQ--GMDCSK-----RAAEQVAAAEVLKREGI 225 G D + + V + + G ++ +AAE AA +LK E I Sbjct: 1376 GDDAAEEKEYLCRVLVGTRCVVEVDG-GVTREEVKVKAAE--AAVNILKAEKI 1425 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 19/145 (13%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 ++ SL+ A++ S S +YER+EFLGD IL + + E LS ++ Sbjct: 970 SDLSLILTAISTGSASEPT--NYERIEFLGDSILKFSATINVAALNPQWPERLLSFHKDA 1027 Query: 78 LVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFMTSIQADVVE 120 +VS T + A + L +I +S K + T AD+VE Sbjct: 1028 IVSNSTLCKAAVKHGLDRYILTKPFTGQKWRPIYVDSVLSRGEDKSMRKMSTKTLADIVE 1087 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ 145 +LI A +DGG++ A + + +Q Sbjct: 1088 ALIGASMIDGGLDKALKCMSIFLQQ 1112 >gi|302685924|ref|XP_003032642.1| hypothetical protein SCHCODRAFT_53921 [Schizophyllum commune H4-8] gi|300106336|gb|EFI97739.1| hypothetical protein SCHCODRAFT_53921 [Schizophyllum commune H4-8] Length = 368 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 85/226 (37%), Gaps = 16/226 (7%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNHF 63 +G L+++A TH+S +E + +LE +G+ ++GL S L + Sbjct: 68 LGNVLTTPELVQQACTHASFVALQKEVNPNAPAPATNAQLEQVGNALMGLFASEYLAAKY 127 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIR----VSSDLRKDVCSFMTSIQADVV 119 L + V TC+ VA+E+ +R +S + T A + Sbjct: 128 PYLPTKVLKAAVTAHVGPLTCANVAQEMGATQLLRWNRTISRNPSHPQVMLHTDALASIP 187 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 +L A +Y + A FV ++ R + R+ K L + P ++ Sbjct: 188 RALTALIYQKRSLPAARQFVHSFFLSRQVDLRSMLKFRNPKWALLQLVRKFDRERPVSRL 247 Query: 178 TFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +G + P + V V +G S + AE AA + L R Sbjct: 248 LKETGRFSNSPVYLVGVFSGEEQIGEGFGSSLKMAEYRAAEDALLR 293 >gi|294611997|gb|ADF27743.1| ribonuclease III [Ehrlichia ruminantium] Length = 92 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 50/91 (54%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 +A+ ++L FI +S R + + + +E+LI A+YLDGG++ A F+ +WK Sbjct: 2 DIAQSINLGIFIIMSDGERSCGGANNCNNLENALEALIGAIYLDGGLKAAKDFIFLFWKN 61 Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 A +DAKT LQEWA +K P Y+ Sbjct: 62 SATHMKVPPQDAKTILQEWAQSKGFPAPSYQ 92 >gi|321452752|gb|EFX64071.1| hypothetical protein DAPPUDRAFT_118569 [Daphnia pulex] Length = 344 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 85/257 (33%), Gaps = 54/257 (21%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLL 59 + + LE++IGY F +++LL +ALTHSS + E LE LGD L L Sbjct: 61 KSFSMTALEEKIGYEFKDKTLLGRALTHSSANVTKCPSRDGENLEVLGDASLDL------ 114 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-------------------- 99 +G+LSV +++ +T + +A L ++ Sbjct: 115 ---NPRYNQGQLSVLKSAITCNDTLAVIAVRSGLHLLLQHRLPEKQIEELRSFVDHQNKN 171 Query: 100 --------------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE--VAGTFVDKYW 143 SS+ + + AD ESLI AL +D E V V Sbjct: 172 QHLFSHEKELVIISSSEGDRAFDIDYPKVYADAFESLIGALRIDCEREDKVIRKVVLNLM 231 Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 K LQ K D V++E+ G Sbjct: 232 GDVIAKFHTNI--PVCPLQRVNQNKIRTEF-----KEEKNLPDGTVNVILEVKNFQSFHG 284 Query: 204 MDCSKRAAEQVAAAEVL 220 S ++A+ AA + Sbjct: 285 SGQSLKSAKTAAARLAI 301 >gi|299748332|ref|XP_001837616.2| double-stranded RNA binding domain-containing protein-containing protein [Coprinopsis cinerea okayama7#130] gi|298407924|gb|EAU84240.2| double-stranded RNA binding domain-containing protein-containing protein [Coprinopsis cinerea okayama7#130] Length = 435 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 68/169 (40%), Gaps = 21/169 (12%) Query: 16 AFANRSLLEKALTHSSIS-----------HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 NR++ + TH S + ER E LGD +LGL+++ L+F+ F Sbjct: 93 EITNRNIELQVFTHRSYHARPTHVFEDHINDLSPDNERYEHLGDTVLGLVVTNLMFDMFP 152 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + G + + +V T ++++++ L +R+ T++QADV E+ + Sbjct: 153 GLRVGPSTKIRSLVVGNSTLAEISKKYRLPDRLRLHQAQAIT-LRASTNVQADVFEAFVG 211 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 L+ D + +++ ++ A K D + P Sbjct: 212 GLFKDQDLPAVQRWLNPLFRPYA----KAAYDYVRK-----QTNLPPLP 251 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 8/51 (15%) Query: 183 PDH--------DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PDH +P + V V + G +G +K+AA AA E L + GI Sbjct: 383 PDHLRIKSSPLNPVWYVKVLVDGEFYGRGRGNTKKAARNEAAKEGLVKLGI 433 >gi|162447497|ref|YP_001620629.1| dsRNA-spesific ribonuclease [Acholeplasma laidlawii PG-8A] gi|161985604|gb|ABX81253.1| dsRNA-spesific ribonuclease [Acholeplasma laidlawii PG-8A] Length = 335 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 18/177 (10%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLL 59 M +E +GY F N++LL +A T SS + E LEF+GD ++ +I + Sbjct: 1 MKEKDIKEIEDILGYTFTNKNLLIQAFTRSSEREKNNNRDSEILEFIGDTVINYVIIQMF 60 Query: 60 FNHFDSA---------KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 N+ +A EGEL+ + +V + + + L F+R SD K + S Sbjct: 61 NNNLFNADNYGLNSQYSEGELTELKSLIVENKNLAAKIDDFGLDRFLR--SDNSKQIPS- 117 Query: 111 MTSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQRALKSGKFRRDAKTELQEWA 165 S ++D++ES++ A+ +D E VD RA G + + +L++W Sbjct: 118 --SFKSDLLESIVGAIAIDSHYEEKEIYEIVDYLLMPRAY-IGSLKFNYYLKLKQWC 171 >gi|169610828|ref|XP_001798832.1| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15] gi|160702165|gb|EAT83689.2| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15] Length = 1443 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 82/240 (34%), Gaps = 28/240 (11%) Query: 7 STLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E + Y F LL A H S SY+RLEFLGD +L + LF + Sbjct: 1163 HKIEMKHPYRFRYPRLLRSAFIHPSQPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYKYP 1222 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVC--------SFMTSIQ 115 L+ +VS + V + ++ V R+ S Sbjct: 1223 DKDPQWLTEHKTPMVSNKFLGAV----QIRDYVYEVEEAEREANGAVDYWVSVSEPPKCL 1278 Query: 116 ADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKS------GKFRRDAKTELQEWAHA 167 ADV+E+ +AA+++D V F D + K L T L Sbjct: 1279 ADVIEAFVAAIFVDSEFDFNVVQKFFDLHLKPFFLDMTLDAYENFASNHPTTRLSRLLSI 1338 Query: 168 KFGVTPEYKV----TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 FG + E+++ T P +V I + S R A A+ L++ Sbjct: 1339 NFGCS-EWRMGALETETLIPGKGKAIAAMVMIHDKVHFHSLGQSGRYARVRASHAALEKL 1397 Score = 55.1 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 51/158 (32%), Gaps = 49/158 (31%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +L +ALT S +YERLEFLGD L + S +F Sbjct: 946 PALALEALTKDSDNSEEHGEEKINFKSGMGPNYERLEFLGDCFLKVATSLSVFVQQPEEN 1005 Query: 68 EGELSVRFNSLVSAETCSQVA-------------RELDLASFIRV--------------- 99 E E VR ++ + + A R+L L ++R Sbjct: 1006 EFEFHVRRMLMLCNQNLMETAVGKKKVASANGTERDLQLYKYVRTDAFSRRNWYPEGLKL 1065 Query: 100 --SSDLRKD-------VCSFMTSIQADVVESLIAALYL 128 L+K + ADV E+ I A ++ Sbjct: 1066 LRGKGLKKTEEDWLNVTHNLGDKSVADVCEAFIGAAFM 1103 >gi|307353641|ref|YP_003894692.1| ribonuclease III [Methanoplanus petrolearius DSM 11571] gi|307156874|gb|ADN36254.1| ribonuclease III [Methanoplanus petrolearius DSM 11571] Length = 173 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 5/138 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHF 63 LE+ IGY F N LL +ALT + S + L LGD ++ +++ L Sbjct: 33 ELEEIIGYRFKNHELLTRALTRLAYSLENDLPEGFHMDALATLGDAVIDVIVLESLMKSG 92 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +GELSV + +V+ + A ++L ++ + A++ E+L Sbjct: 93 -LYSKGELSVAKSDIVNMTRLRKAAESIELFRYVHWGKGEEASHIWTSGRVMAELCEALA 151 Query: 124 AALYLDGGIEVAGTFVDK 141 A+YLDGG+ + + Sbjct: 152 GAVYLDGGLGAVEKVIRE 169 >gi|39942154|ref|XP_360614.1| hypothetical protein MGG_03157 [Magnaporthe oryzae 70-15] gi|145015863|gb|EDK00353.1| hypothetical protein MGG_03157 [Magnaporthe oryzae 70-15] Length = 402 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 54/271 (19%), Positives = 90/271 (33%), Gaps = 63/271 (23%) Query: 16 AFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 + S+ + A THSS+ + +SY+RLE+LGD L L + ++ F + G S Sbjct: 122 EIKDPSIEKAAFTHSSVIGNKLSGVQSYDRLEWLGDAYLELFATCFIYQTFPALSHGASS 181 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSS---DLRKDV----CSFMTSIQADVVESLIAA 125 L+ ++ +Q + L R+ L T I D+ E+ + A Sbjct: 182 QLREVLIRNDSLAQWTQAYGLEKRARLPPEFAGLNHSGQAMMQKKRTKIYGDLFEAYVGA 241 Query: 126 LYLD---GGIEVAGTFVDKYWKQR----------------------------------AL 148 + G + A ++ W R A+ Sbjct: 242 IIASDPVHGTDRAAVWLKSLWAPRLKREIHAEEKRQRCLVASTTSLESDPIQGPTDNYAV 301 Query: 149 KSGKFRRDAKTELQEWAHAK---FGVTPEYKVT----FRSGPDHDPRFTVVVEIS----- 196 + K R K E A GV Y + ++ P F V V + Sbjct: 302 AAPKPNRSPK----EALAAMIVVKGVKLSYVDLPAPKKKDKNNNLPLFAVAVVLDGWGES 357 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 GL G+ +K A AA + + + T Sbjct: 358 GLQLGMGVAKNKSEAGHAAAQRAMDNKKLIT 388 >gi|290999955|ref|XP_002682545.1| predicted protein [Naegleria gruberi] gi|284096172|gb|EFC49801.1| predicted protein [Naegleria gruberi] Length = 339 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 53/253 (20%), Positives = 93/253 (36%), Gaps = 50/253 (19%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYE--RLEFLGDRILGLLISTLLFNHFDSA 66 +E I +++LL +SI + S E RL F+G + L ++ LF HF + Sbjct: 82 IENEIPLPLDDKTLL------TSIVQTRGLSSEGSRLNFVGRNVTALCVADYLFAHFPNL 135 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFI----------------------------- 97 L + + T QVA+ L L + Sbjct: 136 THDHLVMATLEFLKNRTIVQVAKSLKLDGLLSSSLTLVASSNNLNNRDDSDLDNPPIDSE 195 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155 S L + + S+ + ++ AL+ G+ A F+ + +++ + Sbjct: 196 VTGSGLNIERNNL-DSLLVFSIYRMVGALFEQHGLMEARKFIVRNLIAQSIDITAMLQYF 254 Query: 156 DAKTELQEWA-----HAKFGVTPEYKVTFRSGPDHDPRF-TVVVEISGLAPAQGMDCSKR 209 D KT+L + H T +YK + + RF TV V + +G +K+ Sbjct: 255 DPKTQLAQMVRTGEMHEHAHKTVQYKEVSKD----EKRFVTVHVYVDNDVIGEGTGQTKK 310 Query: 210 AAEQVAAAEVLKR 222 AEQ AA + L + Sbjct: 311 IAEQKAAQDALNK 323 >gi|328865990|gb|EGG14376.1| putative RNase III [Dictyostelium fasciculatum] Length = 576 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 23/151 (15%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH----------------SYQESYERLEFLGD 48 + + I +F N LL + TH S + +RLEFLGD Sbjct: 131 KVDQFQSNI-ISFENDLLLREIFTHPSSKKINSLNPAEYKLFKDLLPFTTDNQRLEFLGD 189 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 IL S LF + A EGEL+ R + L + + E + +R SS Sbjct: 190 SILKFCASIYLFFKYPKANEGELTTRRSELTNNTYLLEKCNEWGIIELLRYSSTE----- 244 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 + +ADV+E++ A++L+ G + F+ Sbjct: 245 -DIKKPKADVMEAMFGAIFLERGFKEVYRFI 274 Score = 92.4 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 17/136 (12%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LLE A+T SY+RLEFLGD L ++S L+ F EG LS LV Sbjct: 320 LLEDAIT---CLGDQNYSYQRLEFLGDSYLDGIVSHFLYREFPLENEGFLSQARALLVRN 376 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 E +Q+++ + L + +F T D+ E+ I + LD +E + + Sbjct: 377 EALAQISQRIKLYQLV------TDPSATFSTKRLGDLFEAFIGGVLLDNELEDTKKLIYR 430 Query: 142 YWKQRALKSGKFRRDA 157 +D Sbjct: 431 LL--------NLNKDY 438 >gi|300709179|ref|XP_002996756.1| hypothetical protein NCER_100079 [Nosema ceranae BRL01] gi|239606080|gb|EEQ83085.1| hypothetical protein NCER_100079 [Nosema ceranae BRL01] Length = 1131 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 4/137 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTL 58 + +EK I Y F N+ +EKA+ H S + E +++LE +GD L L +S Sbjct: 973 LPLANILKVEKIINYTFKNKGYIEKAMIHPSYKDNIFGSERFQKLELVGDCFLDLKVSDY 1032 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR--VSSDLRKDVCSFMTSIQA 116 +F + A L SLV+ T + + + L F +S R + ++ Sbjct: 1033 IFFKYTDADPETLHTHRKSLVNNHTFAMILFKSGLYDFSFTGLSDQTRDFNNNKVSKCYG 1092 Query: 117 DVVESLIAALYLDGGIE 133 D+ E+L A+ LD + Sbjct: 1093 DIFEALAGAVILDSEFD 1109 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 58/166 (34%), Gaps = 46/166 (27%) Query: 40 YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 YER EF+GD +L +S LF +L +SLV + +V R+++L + + Sbjct: 795 YERFEFIGDSVLKYSVSKFLFTEC-GYNLNKLVSTKDSLVCNDHLYRVGRQINLQKYFSL 853 Query: 100 S---------------------------SDLRKDVCSFM------------------TSI 114 + +L ++ + + Sbjct: 854 NRYTEHLFQPPAILDLEFDKSLIESLNLKNLFQNNNQYNFVKLYSRKQSQDTNLEKGKKV 913 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 AD+VESLI Y++ G + A F+ S + + T+ Sbjct: 914 YADIVESLIGVHYIEQGFQKAWNFIKSIGILENHGSKRHSNNFMTK 959 >gi|254411973|ref|ZP_05025748.1| RNase3 domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180939|gb|EDX75928.1| RNase3 domain protein [Microcoleus chthonoplastes PCC 7420] Length = 317 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 66/148 (44%), Gaps = 5/148 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHF 63 +LE +IG F + L AL H S + +++ ERL+FLGD I+ L+I+ L+++ Sbjct: 6 ESLENQIGIQFKHSDTLRLALMHRSYAEQIGESEQNNERLKFLGDAIVNLVITDYLYHNC 65 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCS-FMTSIQADVVES 121 + + LV + +++ +L L + + + + + + + Sbjct: 66 PYLEVSNFKGLRDKLVEGQRLTKLWYQLGLGEGYPFLGLTQERHRLRLQNHNPFEEALIA 125 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK 149 L+ A++ D G A ++ K L+ Sbjct: 126 LVGAIHQDRGFSQARNWLVKQLIAPLLE 153 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 14/145 (9%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LLE+ H ++L FLGD +L +++ L+ + + K G L+ F L S Sbjct: 151 LLER---HLKKIKERSSPNKQLRFLGDAVLKGIVADYLYGYLPNVKVGNLNDLFKELTSK 207 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT---F 138 + S ++ ++ + ++L+AA+YL+ E Sbjct: 208 DNQSNFINQITTEELTALNLG--------NEKVLGKSFKALLAAVYLNRSAENDKRGFAE 259 Query: 139 VDKYWKQRALKSGKFRRDAKTELQE 163 + ++ +R + + R A L E Sbjct: 260 TENWFVERFVDQEQVLRKAIRLLME 284 >gi|281414105|ref|ZP_06245847.1| RNAse III [Micrococcus luteus NCTC 2665] Length = 130 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 6/123 (4%) Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTEL 161 R+ + SI AD +E+LI A+Y+D G A V ++ + R D KT + Sbjct: 1 RRTGGADKDSILADTLEALIGAVYVDHGAVAAAALVHRHVVPLLDEPDLLRESTDWKTVV 60 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE--- 218 E A Y + + GP HDPR+ + + + SK+ AE+ AAA Sbjct: 61 AEAASRHGLGAVRYAIEGQ-GPAHDPRYRATLVVGEREYGSAVASSKKQAERDAAAASWP 119 Query: 219 VLK 221 L+ Sbjct: 120 ALE 122 >gi|258571479|ref|XP_002544543.1| predicted protein [Uncinocarpus reesii 1704] gi|237904813|gb|EEP79214.1| predicted protein [Uncinocarpus reesii 1704] Length = 387 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 23/210 (10%) Query: 18 ANRSLLEKALTHSS-----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +++L TH + SY+RLE LGD L ++ + L+++ F S G +S Sbjct: 132 KDKTLETAVFTHQGEIPAHAPPAIHHSYDRLEILGDAYLEVIATRLIWDRFQSLPPGRIS 191 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---D 129 LV ET +Q + +RVS ++R ++ ++ DV E+ AA+ L Sbjct: 192 QIRELLVKNETLAQFSERFKFDQLVRVSPEIRSQPKRWV-KVKGDVFEAYAAAVILSDPI 250 Query: 130 GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G + ++ + W ++ K L + K GV Y S P Sbjct: 251 NGFNLVEDWLVRLWGPILDRVQPEDQATHHKESLAKRVMGK-GVKLRY--IDESPPITRK 307 Query: 188 ----RFTVVVEISG-----LAPAQGMDCSK 208 F + V ++G G +K Sbjct: 308 GGMATFFIGVYLTGWGWESQHLGSGTGLNK 337 >gi|281211700|gb|EFA85862.1| putative RNase III [Polysphondylium pallidum PN500] Length = 1126 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 22/157 (14%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS----------------YQESYERLEFLGD 48 + + ++ I Y+ N LL + TH S S Y+ +R+EFLGD Sbjct: 696 KMESFKRNI-YSINNERLLREVFTHPSTKRSNQTPPVNMKIYKNYKFYEGDNQRIEFLGD 754 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 +L S LF F A EG L+ + + + + ++ ++ +R+ + Sbjct: 755 SVLKFCTSIYLFYKFPEAMEGVLTTKRSEMTNNNYLIEICDMFEMDEVLRLPQNKD---- 810 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 + +ADVVE+L A+YL+ G+ A F+ K + Sbjct: 811 -DIKKPKADVVEALFGAVYLERGMYEAFRFIMKMIFK 846 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 6/128 (4%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 + L +A+ + S + SY+RLEFLGD L ++ S LF+ F + +EG LS Sbjct: 877 NIEIKHNCLFTEAM---NCSSDPRMSYQRLEFLGDAFLDVVTSDFLFHAFPNEQEGFLSQ 933 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 LV ++ + + ++L+L + +SS F D+ ES++ L LD GIE Sbjct: 934 ARALLVKNDSLACIFQQLNLKDCVDLSS---CPGIVFNQKRMGDLFESVVGCLLLDQGIE 990 Query: 134 VAGTFVDK 141 FV K Sbjct: 991 KTKDFVLK 998 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 12/73 (16%) Query: 156 DAKTELQEWAHAKFGV-TPEY----KVTFRSGPDHDPRFTVVVEI--SGLAP-AQGMDCS 207 + K LQE P+Y V+ +G + F V + G A+G + Sbjct: 5 NYKGLLQELCQRNDPQSLPQYSDAIYVSDNTGNN----FITEVVVKYGGKVYRAEGRAKA 60 Query: 208 KRAAEQVAAAEVL 220 K+ AE+ AA +VL Sbjct: 61 KKEAERYAARDVL 73 >gi|149732822|ref|XP_001500801.1| PREDICTED: ribonuclease type III, nuclear isoform 3 [Equus caballus] Length = 1192 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 2/91 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDL 93 F EG L++ +SLV+ T ++VA EL + Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGM 1159 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 926 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 986 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1032 >gi|114600831|ref|XP_001156889.1| PREDICTED: ribonuclease III, nuclear isoform 1 [Pan troglodytes] Length = 1189 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 2/91 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDL 93 F EG L++ +SLV+ T ++VA EL + Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGM 1159 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 926 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 986 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1032 >gi|32450506|gb|AAH54003.1| RNASEN protein [Homo sapiens] Length = 1192 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 2/91 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDL 93 F EG L++ +SLV+ T ++VA EL + Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGM 1159 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 926 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 986 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1032 >gi|125586950|gb|EAZ27614.1| hypothetical protein OsJ_11558 [Oryza sativa Japonica Group] Length = 258 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 70/204 (34%), Gaps = 29/204 (14%) Query: 42 RLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101 RLEFLGD IL L + ++ + L+ ++ V+ + A + L I SS Sbjct: 46 RLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSS 105 Query: 102 DLRKDVCSF---------------------MTSIQADVVESLIAALYLDG--GIEVAGTF 138 S+ + + DV+ES+ A+YLD EV Sbjct: 106 SELHRKMSYYLEEFGQSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRS 165 Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + + + A D LQE+ + Y+ G V+ Sbjct: 166 MKRLLEPLA-TPETIEPDPVKGLQEFCDRRSFK-ITYEKNHVDGVS---SVIARVKAGET 220 Query: 199 AP-AQGMDCSKRAAEQVAAAEVLK 221 A K A+++A+ VLK Sbjct: 221 TYSATKSGPCKLVAKKLASKAVLK 244 >gi|189205613|ref|XP_001939141.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187975234|gb|EDU41860.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 1572 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 34/188 (18%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E + Y F LL A H S + +Y+RLEFLGD +L + T L+ + Sbjct: 1283 KIEAKHPYHFKYPRLLRSAFAHPSYPYIYENIPNYQRLEFLGDSLLDMAFITHLYYKYPD 1342 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF--------------- 110 L+ +VS + V +L +I+ ++ + Sbjct: 1343 KDPQWLTEHKTPMVSNKFLGAVCVKLGWHVYIKQNTAILTSQIRDYVLEAQEAEREASSA 1402 Query: 111 ---------MTSIQADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKS--GKF 153 ADV+E+ AA+++D V F + +++ L++ Sbjct: 1403 VDYWVTISEPPKCLADVIEAYTAAIFVDAEFDFSVVQDFFNMHLKPFFEDMTLEAYENFA 1462 Query: 154 RRDAKTEL 161 T L Sbjct: 1463 SNHPTTRL 1470 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 51/160 (31%), Gaps = 49/160 (30%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +L +ALT S +YERLEFLGD L + S +F Sbjct: 1065 PALALEALTKDSENSEEHGEEKINFKSGMGPNYERLEFLGDCFLKMATSLSVFVQQPDEN 1124 Query: 68 EGELSVRFNSLVSAETCSQVA-------------RELDLASFIRV--------------- 99 E E VR ++ + + A R++ L ++IR Sbjct: 1125 EFEFHVRRMEMLCNKNLLETAIGKKKVTSVDGTERDIKLYNYIRTDSFSRRTWYPDGMKL 1184 Query: 100 --SSDLRKD-------VCSFMTSIQADVVESLIAALYLDG 130 + K + ADV E+ I A + + Sbjct: 1185 LRGKGVNKSEDDWLKLTHNLGDKSIADVCEAFIGAAFQEH 1224 >gi|114600833|ref|XP_001157148.1| PREDICTED: ribonuclease III, nuclear isoform 2 [Pan troglodytes] Length = 1193 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 2/93 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95 F EG L++ +SLV+ T ++VA EL++ Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELEIKE 1161 Score = 98.2 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 926 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S + A+ E+LI A+YL+G +E A + Sbjct: 986 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1032 >gi|281205614|gb|EFA79803.1| hypothetical protein PPL_06622 [Polysphondylium pallidum PN500] Length = 1043 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 20/144 (13%) Query: 18 ANRSLLEKALTHSSISHSY----------------QESYERLEFLGDRILGLLISTLLFN 61 N+ LL + TH SI+ + + +RLE+ GD IL I+ L+ Sbjct: 665 NNQRLLREVFTHPSINRNNTVPPRSLKVFKDYQLFKSDNQRLEYFGDSILKFCITYYLYF 724 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + +A EG L+ + + + S + + + +R+ L ADV+E+ Sbjct: 725 LYPNAPEGFLTTKRSEVTSNTYLQNICDQTSIDDILRLG--LSNTEDYKKPK--ADVIEA 780 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ 145 L AA+YL+ GI V F+ + Sbjct: 781 LFAAVYLECGINVVYEFIINLLFK 804 Score = 90.1 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 10/130 (7%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 + L ++A+ + S + +Y+RLEFLGD + L++S L+++F +EG LS Sbjct: 835 NINIKDTCLFQEAM---NCSSDPKMNYQRLEFLGDSYIDLVVSEFLYHNFPREQEGFLSQ 891 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 LV E + A + +R+ + V + D+ ES L LDGG++ Sbjct: 892 TRALLVRNEKLANTA------NHLRIRQSIDPSVVPTTKRM-GDLFESFTGCLLLDGGLQ 944 Query: 134 VAGTFVDKYW 143 +F+ K+ Sbjct: 945 DTKSFLIKHL 954 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 13/74 (17%) Query: 156 DAKTELQEWAHAKFGVTPEYK----VTFRSGPDHDPRF---TVVVEISGLAP-AQGMDCS 207 + K LQE + V+P Y +T G F V V G +G S Sbjct: 4 NHKGILQELCQKRKEVSPVYTKPTIITDIGGN-----FYYTEVTVNFKGQRFTGEGKARS 58 Query: 208 KRAAEQVAAAEVLK 221 K+ AE+ AA L+ Sbjct: 59 KKDAEKTAALNALQ 72 >gi|327349134|gb|EGE77991.1| dicer [Ajellomyces dermatitidis ATCC 18188] Length = 1482 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 68/235 (28%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY+F + L +A TH S S SY+RLEF+GD IL +I LFN + Sbjct: 1151 FQEIESLLGYSFNKKVFLVQAFTHPSNPGSTTSSYQRLEFVGDAILDHIIVHHLFNSSRN 1210 Query: 66 AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99 ++ + +L +A+ + + R++ L ++R Sbjct: 1211 LPHFDMHLMRTALANADFLAFLCIGMSTEQARSEVVESSKKNTVTSLTTRKVFLWQYMRH 1270 Query: 100 SSD------------------------LRKDVCS--------FMTSIQADVVESLIAALY 127 + L K +D++ES++ A++ Sbjct: 1271 GTSWELAAAQQQTADQYQKLQADISEALEKSNTYPWTLLSRLRAQKFFSDLIESVLGAIF 1330 Query: 128 LD--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 +D G ++ F+++ + ++ ++ K Q + Y Sbjct: 1331 IDSHGSLDACTAFLERIGLMKFLRRMLVEESMDIMHPK---QRLGQEVGRMKVRY 1382 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 20/149 (13%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 AF + SL+ A++ +S++ +Y+R+EFLGD IL + L EG LS Sbjct: 976 VAFTDLSLVVTAIS-ASVAREAT-NYQRIEFLGDSILKFHTTLQLSAANLVWHEGLLSRA 1033 Query: 75 FNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFM-TSIQA 116 +++VS + S A E L FI + S+ + M T A Sbjct: 1034 KDNVVSNKRLSYAAVETGLDKFILVDVFTGAKWRPRYNKVHLESEEQGIPQREMTTKTLA 1093 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 DVVE+L+ A ++GG ++ + + Sbjct: 1094 DVVEALLGAATIEGGETKTEKCLEIFLPE 1122 >gi|239610437|gb|EEQ87424.1| dicer-like protein 2 [Ajellomyces dermatitidis ER-3] Length = 1509 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 68/235 (28%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY+F + L +A TH S S SY+RLEF+GD IL +I LFN + Sbjct: 1177 FQEIESLLGYSFNKKVFLVQAFTHPSNPGSTTSSYQRLEFVGDAILDHIIVHHLFNSSRN 1236 Query: 66 AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99 ++ + +L +A+ + + R++ L ++R Sbjct: 1237 LPHFDMHLMRTALANADFLAFLCIGMSTEQARSEVVESSKKNTVTSLTTRKVFLWQYMRH 1296 Query: 100 SSD------------------------LRKDVCS--------FMTSIQADVVESLIAALY 127 + L K +D++ES++ A++ Sbjct: 1297 GTSWELAAAQQQTADQYQKLQADISEALEKSNTYPWTLLSRLRAQKFFSDLIESVLGAIF 1356 Query: 128 LD--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 +D G ++ F+++ + ++ ++ K Q + Y Sbjct: 1357 IDSHGSLDACTAFLERIGLMKFLRRMLVEESMDIMHPK---QRLGQEVGRMKVRY 1408 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 20/149 (13%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 AF + SL+ A++ +S++ +Y+R+EFLGD IL + L EG LS Sbjct: 1002 VAFTDLSLVVTAIS-ASVAREAT-NYQRIEFLGDSILKFHTTLQLSAANLVWHEGLLSRA 1059 Query: 75 FNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFM-TSIQA 116 +++VS + S A E L FI + S+ + M T A Sbjct: 1060 KDNVVSNKRLSYAAVETGLDKFILVDVFTGAKWRPRYNKVHLESEEQGIPQREMTTKTLA 1119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 DVVE+L+ A ++GG ++ + + Sbjct: 1120 DVVEALLGAATIEGGETKTEKCLEIFLPE 1148 >gi|261195592|ref|XP_002624200.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081] gi|239588072|gb|EEQ70715.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081] Length = 1509 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 68/235 (28%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY+F + L +A TH S S SY+RLEF+GD IL +I LFN + Sbjct: 1177 FQEIESLLGYSFNKKVFLVQAFTHPSNPGSTTSSYQRLEFVGDAILDHIIVHHLFNSSRN 1236 Query: 66 AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99 ++ + +L +A+ + + R++ L ++R Sbjct: 1237 LPHFDMHLMRTALANADFLAFLCIGMSTEQARSEVVESSKKNTVTSLTTRKVFLWQYMRH 1296 Query: 100 SSD------------------------LRKDVCS--------FMTSIQADVVESLIAALY 127 + L K +D++ES++ A++ Sbjct: 1297 GTSWELAAAQQQTANQYQKLQADISEALEKSNTYPWTLLSRLRAQKFFSDLIESVLGAIF 1356 Query: 128 LD--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 +D G ++ F+++ + ++ ++ K Q + Y Sbjct: 1357 IDSHGSLDACTAFLERIGLMKFLRRMLVEESMDIMHPK---QRLGQEVGRMKVRY 1408 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 20/149 (13%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 AF + SL+ A++ +S++ +Y+R+EFLGD IL + L EG LS Sbjct: 1002 VAFTDLSLVVTAIS-ASVAREAT-NYQRIEFLGDSILKFHTTLQLSAANLVWHEGLLSRA 1059 Query: 75 FNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFM-TSIQA 116 +++VS + S A E L FI + S+ + M T A Sbjct: 1060 KDNVVSNKRLSYAAVETGLDKFILVDVFTGAKWRPRYNKVHLESEEQGIPQREMTTKTLA 1119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 DVVE+L+ A ++GG ++ + + Sbjct: 1120 DVVEALLGAATIEGGETKTEKCLEIFLPE 1148 >gi|330802362|ref|XP_003289187.1| hypothetical protein DICPUDRAFT_79950 [Dictyostelium purpureum] gi|325080763|gb|EGC34305.1| hypothetical protein DICPUDRAFT_79950 [Dictyostelium purpureum] Length = 1059 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 10/139 (7%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 TL + + SLLE+A S +Y+RLEF+GD +L + + L+ F Sbjct: 908 DLRTLLFNLDLRIDHPSLLEEAF-----SSGTNVNYQRLEFVGDGVLDYITADYLYKEFP 962 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + LV S ++ L L I +D + + D ESL+ Sbjct: 963 EYNEGTLTEFRSRLVRNNNLSDASKRLKLPPNI---TDEER--AALPPKRLGDYFESLVG 1017 Query: 125 ALYLDGGIEVAGTFVDKYW 143 L LD G+E FV K+ Sbjct: 1018 CLVLDRGVEETKQFVKKHL 1036 Score = 96.7 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 24/156 (15%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-----------------HSYQESYERLEFL 46 +R + RI + + +L +A TH S + Y +RLE+L Sbjct: 736 VRLAQFNTRI-VSLKSYKILREAFTHPSTKASNRLIPPSELPMFKDYYPYLGDNQRLEYL 794 Query: 47 GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 GD +L L S LF + +KEG LS+ + + + +V++ + L +R+S+ Sbjct: 795 GDSVLKLASSIYLFYKYSGSKEGALSMERANNIKNDNLIEVSKRMHLDEILRLSNSDE-- 852 Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 + ADV+E+L A+ LD G E A + +Y Sbjct: 853 ----IKKPHADVIEALFGAISLDRGFEKAYEIIVRY 884 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 KT+L E+ + Y + G +H+ F +V ++ +K+ AE+ A Sbjct: 5 KTQLNEYIQKRKLPNIVY-TSESRGSEHNKDFKTIVIVNNRRIESEWRKNKKDAEKDCAT 63 Query: 218 EVLK 221 +L+ Sbjct: 64 HILE 67 >gi|320585938|gb|EFW98617.1| RNA helicase rnase [Grosmannia clavigera kw1407] Length = 2671 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 65/329 (19%), Positives = 105/329 (31%), Gaps = 114/329 (34%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLF----N 61 +TLE+ +GY F SLL +A+TH S ERLEF+GD +L +I L Sbjct: 1241 TTLEELLGYQFRRPSLLAEAMTHPSTPGIREGGCMERLEFIGDAVLDYVIVQRLLGGKGG 1300 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELD----------------------LASFIRV 99 + ++ + ++V+A A E L +F+R Sbjct: 1301 KRLDLEHQKMHLLRTTVVNAAFLGFAAMEFSISSEASTVTADGTVTRGEIATPLWAFMRH 1360 Query: 100 S---------SDLRKDVCSFMTSIQA-----------------------DVVESLIAALY 127 +K + S+ A D+VE++I A++ Sbjct: 1361 GGSDEMARMQKAAQKRHAALRESVLAALWEGSEYPWVQLAQLRLEKGFSDIVEAVIGAVW 1420 Query: 128 LDGG-IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT---- 178 +D G + ++K + QRAL R K +E Y+V Sbjct: 1421 VDAGSLGPVEALLEKMGVLSYLQRALDEDVHLRHPK---EELGRISGNARLHYRVAAGES 1477 Query: 179 --------------------------------------FRSG--PDHDPRFTVVVEISGL 198 G D P FT + I+G+ Sbjct: 1478 VLPPLAEVRRKRRRDEEAAQDESSDEDEDEEGDEKREGKEEGARADQAPIFTCRLSINGV 1537 Query: 199 APAQG-MDCSKRAAEQVAAAEVLK--REG 224 + S+ AE AAA ++ +EG Sbjct: 1538 CVVEILDGRSREEAEVRAAAIAVRDLKEG 1566 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 17/144 (11%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 ++RSL+ A+ S+ + ++YE LEF+GD +L L+ + A EG LS+ + Sbjct: 1073 SDRSLITTAI--SAPAARLHDNYEVLEFIGDAVLKLMAAANCAAQNLDAPEGHLSLFKDR 1130 Query: 78 LVSAETCSQVARELDLASFIRVS------------SDLRKDVCSF---MTSIQADVVESL 122 LV+ + A E L FI S + T ADVVE+L Sbjct: 1131 LVANSRLCRAATEFGLDRFIVGSQWSLREWRDVKIEAEEEKGGEQLVMSTKTLADVVEAL 1190 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR 146 I A +DGG+ A + +R Sbjct: 1191 IGAALVDGGLTRALECMRILLPER 1214 >gi|154150151|ref|YP_001403769.1| ribonuclease III [Candidatus Methanoregula boonei 6A8] gi|153998703|gb|ABS55126.1| ribonuclease III [Methanoregula boonei 6A8] Length = 196 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 9/154 (5%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY------ERLEFLGDRILGLLI 55 + LE+ IGY F + L +ALTHS+ ++ + + LGD +L + Sbjct: 6 KKENLAELERIIGYHFFEQQHLIRALTHSAYANEVIQKNRICLTQDAYSTLGDAVLKTSL 65 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 L K G ++ L + +Q+ R L + F+R+ + S +I Sbjct: 66 ILFLMEKGLQEK-GAITRAKEQLEDNASLAQIGRRLKIRRFVRLGRGEKDLWKSGEDTIL 124 Query: 116 ADVVESLIAALYLDG--GIEVAGTFVDKYWKQRA 147 AD VE++I A+YLD + V + + + Sbjct: 125 ADTVEAIIGAVYLDSDASLGVVRQCIGAWLEPEL 158 >gi|257058554|ref|YP_003136442.1| ribonuclease III [Cyanothece sp. PCC 8802] gi|256588720|gb|ACU99606.1| ribonuclease III [Cyanothece sp. PCC 8802] Length = 323 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 7/151 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFN 61 + S++E +IG F N LL L H S + + ++ ERLE+LG+ IL L+I+ L+ Sbjct: 4 KSSSVEDKIGINFKNSELLFLCLIHPSYAQQINEPEKDNERLEYLGETILRLVITDYLYQ 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLAS---FIRVSSDLRKDVCSFMTSIQADV 118 + +LS + L E + + L L F+ + D R + + Sbjct: 64 NCPYLAVSKLSALRDKLEEGERLTTLWFNLGLGETFPFLAL-KDERYRLKIKRNNPFEKA 122 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 +++L+ AL +D G +++K L+ Sbjct: 123 LKALVGALEIDRGYSQTYNWLNKQLIAPLLE 153 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 56/134 (41%), Gaps = 19/134 (14%) Query: 34 HSYQESYER------LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 +++ ER L+FLGD + +++ L+ L+ + +LVS+E Sbjct: 154 RHLKKNQERVFPEKQLKFLGDALYKAIVTDYLYRLLPYINPPRLTKVYKTLVSSE----- 208 Query: 88 ARELDLASFI-RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK---YW 143 + +I +++S+ + + + I + ++ A+YL E + T K +W Sbjct: 209 ----KESDYISKITSEDWQIINNQNPKIPNNSFSCILGAMYLYFSQENSKTSFRKTGEWW 264 Query: 144 KQRALKSGKFRRDA 157 + + + DA Sbjct: 265 IKNCVDEEEVWHDA 278 >gi|218245517|ref|YP_002370888.1| ribonuclease III [Cyanothece sp. PCC 8801] gi|218165995|gb|ACK64732.1| ribonuclease III [Cyanothece sp. PCC 8801] Length = 323 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 7/151 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFN 61 + S++E +IG F N LL L H S + + ++ ERLE+LG+ IL L+I+ L+ Sbjct: 4 KSSSVEDKIGINFKNSELLFLCLIHPSYAQQINEPEKDNERLEYLGETILRLVITDYLYQ 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLAS---FIRVSSDLRKDVCSFMTSIQADV 118 + +LS + L E + + L L F+ + D R + + Sbjct: 64 NCPYLAVSKLSALRDKLEEGERLTTLWFNLGLGETFPFLAL-KDERYRLKIKRNNPFEKA 122 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 +++L+ AL +D G +++K L+ Sbjct: 123 LKALVGALEIDRGYSQTYNWLNKQLIAPLLE 153 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 56/134 (41%), Gaps = 19/134 (14%) Query: 34 HSYQESYER------LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 +++ ER L+FLGD + +++ L+ L+ + +LVS+E Sbjct: 154 RHLKKNQERVFPEKQLKFLGDALYKAIVTDYLYRLLPYINPPRLTKVYKTLVSSE----- 208 Query: 88 ARELDLASFI-RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK---YW 143 + +I +++S+ + + + I + ++ A+YL E + T K +W Sbjct: 209 ----KESDYISKITSEDWQIINNQNPKIPNNSFSCILGAMYLYFSQENSKTSFKKTGEWW 264 Query: 144 KQRALKSGKFRRDA 157 + + + DA Sbjct: 265 IKNCVDEEEVWHDA 278 >gi|302687578|ref|XP_003033469.1| hypothetical protein SCHCODRAFT_37756 [Schizophyllum commune H4-8] gi|300107163|gb|EFI98566.1| hypothetical protein SCHCODRAFT_37756 [Schizophyllum commune H4-8] Length = 1343 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/208 (22%), Positives = 76/208 (36%), Gaps = 61/208 (29%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFN 61 +E+ +GY F ++LL +ALTH+S SY RLEFLGD +L + ++ +F Sbjct: 1124 PAELQYVERMLGYTFERKALLIEALTHASYQEPLPTPSYGRLEFLGDAVLDMAVTPYIFA 1183 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVA---------------------------RELDLA 94 + G + +R ++ V+ + V +++ L Sbjct: 1184 SKKNYSPGHIHLRRSAAVNMHFLAFVCLRAKVAVDKHMPRPTAPDWRVQMATESQDIYLW 1243 Query: 95 SFIRVSS-----DLRKDVCSFM--------------------------TSIQADVVESLI 123 + SS D F +DVVESLI Sbjct: 1244 QCMLHSSSTVIDDQNNTFARFRRLEKEISEALETGDIFPWAALTRMQAPKFFSDVVESLI 1303 Query: 124 AALYLD--GGIEVAGTFVDKYWKQRALK 149 A++LD G +E+A + R L+ Sbjct: 1304 GAVFLDAEGDMEIATDVIRTLGIMRVLE 1331 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 34/149 (22%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +SL+ A+T +Y+RLE +GD +L L+S L+ + EG L+ + + V Sbjct: 956 QSLMSVAMTAP--VSQEPVNYQRLETMGDTVLKYLVSIQLYAEYPLWHEGYLAKQKDHTV 1013 Query: 80 SAETCSQVARELDL-------------------------ASFIRVSSDLRKDVCSFMTSI 114 S ++++ + + ++++S+L S+ Sbjct: 1014 SNVRLAKISVRRHIFQWIIREKNKPKKKKKKDNNQLSTKGTVLKITSELLLT----KLSV 1069 Query: 115 QADVVESLIAALYLDGGIE---VAGTFVD 140 ADV+ESLI A Y+ GG+ F D Sbjct: 1070 LADVIESLIGAAYVHGGLSLGRACAQFFD 1098 >gi|166240125|ref|XP_647462.2| hypothetical protein DDB_G0268410 [Dictyostelium discoideum AX4] gi|165988755|gb|EAL73658.2| hypothetical protein DDB_G0268410 [Dictyostelium discoideum AX4] Length = 1385 Score = 99.8 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 7/152 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 ++ IG ++ SLLE+AL HS +SY+RLE++GD +L +S L+ Sbjct: 1210 LAHQEIRAFLDGIGVHISHSSLLEEALCFPYSFHSASKSYQRLEYVGDAVLDFFVSDFLY 1269 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A+EG+L+ + LV S ++R+L L VS +R D +E Sbjct: 1270 ATFPLAQEGQLTDYRSRLVRNSNLSSISRKLCLPP--TVSKGIRDT---LPIKKLGDYLE 1324 Query: 121 SLIAALYLD--GGIEVAGTFVDKYWKQRALKS 150 S I ++D E + V KY R Sbjct: 1325 SFIGCCFVDTTQSFEYTKSLVYKYLDLRIDNP 1356 Score = 96.7 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 67/199 (33%), Gaps = 46/199 (23%) Query: 18 ANRSLLEKALTHSSIS----------------HSYQESYERLEFLGDRILGLLISTLLFN 61 + +L + TH S Y +RLEFLGD +L L+ + LF Sbjct: 1056 KSAKILREVFTHPSTKTIPKRTLTQLGIFGKYQPYLGDNQRLEFLGDSVLKLVSTIYLFF 1115 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG LS + + V++ L L +R +++ QADV+E+ Sbjct: 1116 KYPKMSEGFLSQTRSDFTKNDHLLDVSKRLGLEEILRFTTEEEFR------KPQADVIEA 1169 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 LI A+Y+D G A + E+ P Y F Sbjct: 1170 LIGAVYIDRGFFEAYKLTVCWIFDEPDA-------------EY--------PIYNTKFEE 1208 Query: 182 GPDHDPRFTVVVEISGLAP 200 H + + G+ Sbjct: 1209 TLAHQ---EIRAFLDGIGV 1224 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K +L EW + Y T G +H+ F +V ++G +K+ +E+ A Sbjct: 10 KVQLNEWLQKRKLPLSIYH-TEYKGSEHNKDFKSIVIVNGKEIESDWKKTKKESEKDCAK 68 Query: 218 EVLK 221 +L+ Sbjct: 69 RILE 72 >gi|71017953|ref|XP_759207.1| hypothetical protein UM03060.1 [Ustilago maydis 521] gi|46098828|gb|EAK84061.1| hypothetical protein UM03060.1 [Ustilago maydis 521] Length = 469 Score = 99.8 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 78/217 (35%), Gaps = 27/217 (12%) Query: 34 HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 E + L +G+ +LG+L + L + + L ++ V T S V EL L Sbjct: 204 SEGVEHHAALATVGNSLLGMLATEHLHLRYPNLPTRVLKAAVSAYVGPSTLSDVGSELGL 263 Query: 94 A--SFIRVSSDLRKDVCSFMTS----------------------IQADVVESLIAALYLD 129 A + +R + R F + + AD + +++A ++ + Sbjct: 264 AAQNILRWNKQARAPGSGFTQNRGGRGAAPRSTNSATRTLLSRDVAADAMRAIVAVIFQE 323 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGP-DHD 186 G+ A FV ++ R + D K L P+ ++ SG Sbjct: 324 QGLSAARNFVTSHFLSRGFNLSALLKFNDPKHALSSTCAKYGKSPPQSRMIAESGRLSIS 383 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P F V V +G S R AE AA + L+R Sbjct: 384 PVFVVGVWSGETKIGEGSGSSIRMAEFRAAEDALRRL 420 >gi|121807817|sp|Q2VF19|DCL1_CRYPA RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease DCL-1; Includes: RecName: Full=ATP-dependent helicase DCL-1 gi|77632774|gb|ABB00356.1| dicer-like protein 1 [Cryphonectria parasitica] Length = 1548 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 78/268 (29%), Gaps = 53/268 (19%) Query: 8 TLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + + GY F + +L A H S Y+RLEFLGD + + LF+ Sbjct: 1250 KIHEATGYQFKHPRVLRSAFRHPSRPYVFDKVPHYQRLEFLGDALFDMACVDYLFHIAPD 1309 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF--------------- 110 L+ ++VS + +A L FI Sbjct: 1310 EGPQWLTEHKMAMVSNQFLGCLAVSLGFHKFILHHHASIGSQIHEYVTEITEARRAAEDA 1369 Query: 111 ---------------------MTSIQADVVESLIAALYLDGGIE--VAGTF----VDKYW 143 DV+E+ + A+++D + V F V ++ Sbjct: 1370 AEAAGKPRSAYSRDYWVEAPQPPKCIPDVLEAYVGAIFVDSKYDYSVVQQFFHAHVLPFF 1429 Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--------FTVVVEI 195 + + T ++ FG Y + P D + + Sbjct: 1430 ASMRMYDTFANKHPVTFFTQYVFETFGCH-AYGLHAEEMPVKDDTGLVTGKTQVVAGILL 1488 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G + S R A+ AA + L + Sbjct: 1489 HGQVVEGAVRDSGRYAKIAAARKALDKL 1516 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 54/161 (33%), Gaps = 28/161 (17%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +A + +YERLE LGD L + + +F + E + ++ + Sbjct: 1067 IQAFEPVNFQPGMGANYERLELLGDSFLKMATTIAVFTLIPNKDEFDYHCERMVMICNQN 1126 Query: 84 CSQVAR--ELDLASFIRVSSDLR---------------------KDVCSFMTSIQADVVE 120 VA+ +L L +IR S R D ADV E Sbjct: 1127 LFGVAKSDDLKLHEYIRSKSFERGTWYPVLKLEFGKTHLKTLKQMDEHRLADKSIADVCE 1186 Query: 121 SLIAALYLDG----GIEVAGTFVDKYWKQRALKSGKFRRDA 157 +LI A Y+ ++A V + + K+ D Sbjct: 1187 ALIGAAYMTTRKHDDYDLAVRAVTRLVNHKQHPMTKWD-DY 1226 >gi|312213183|emb|CBX93265.1| similar to dicer-like protein 2 [Leptosphaeria maculans] Length = 1393 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 75/213 (35%), Gaps = 57/213 (26%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 STLE+ IG+ F+ + LL A+TH+S + Y+R EFLGD +L +I+ L+ H Sbjct: 1089 LSTLERLIGHTFSKKFLLLDAITHASYLGPNVHCDYQRTEFLGDAVLDFIITKRLYAHTP 1148 Query: 65 SAKEGELSVRFNSLVSAETCSQVAREL-------------------DLASFIRVSSD--- 102 + + ++V+A + E L F+R + Sbjct: 1149 PLEHQTMHAIRTAMVNASFLAFRMFETTIDEHLTNKATLQTDVQSRALWQFLRSGAPQVN 1208 Query: 103 -------LRKDVCS---------------------FMTSIQADVVESLIAALYLD--GGI 132 + +D+VES++ A+Y+D G Sbjct: 1209 AAREIAFKQHQEARGQILVALERDARYPWHLLALTDPPKFLSDIVESVLGAIYIDSRGDF 1268 Query: 133 EVAGTFVDKY----WKQRALKSGKFRRDAKTEL 161 + FV + +R L+ K L Sbjct: 1269 SICQAFVQRLGILESLERILRDNVDCLHPKERL 1301 Score = 75.1 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 25/145 (17%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + LL KALT S S E Y++LEF GD IL + S L E L+ + ++ Sbjct: 922 DLPLLVKALT--SSSTGEVEDYQQLEFYGDCILKFISSLHLMAANPKEPESFLTQKKGNI 979 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ--------------------ADV 118 VS + ++ + L ++ R + + ADV Sbjct: 980 VSNGSLTRASLSAGLDRYVITK---RFTGAKWQPRLLVETVTVTSPPNKVKLSSKLIADV 1036 Query: 119 VESLIAALYLDGGIEVAGTFVDKYW 143 VES+I A ++ GG A + Sbjct: 1037 VESIIGASFVVGGFPKAFACIQTLL 1061 >gi|258565145|ref|XP_002583317.1| predicted protein [Uncinocarpus reesii 1704] gi|237907018|gb|EEP81419.1| predicted protein [Uncinocarpus reesii 1704] Length = 1194 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 99/270 (36%), Gaps = 70/270 (25%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ +E+ +GY F +SL+ ALTH S S + + SY+RLEF+GD +L +++ LF Sbjct: 896 SMVLPEIEELLGYTFTKKSLVLAALTHPS-STTSRHSYQRLEFIGDSVLDIIVVQALFGS 954 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASF 96 + + +LV+A+ + + R+ L F Sbjct: 955 PREFAHYNMHLMRTALVNADFLAFLCMNVYVEKDRGEAVENIKKKVKIEMTKRKSHLWGF 1014 Query: 97 IRVS---------------SDLRKDVCSFM-----------------TSIQADVVESLIA 124 ++ S + ++ + +D++ES++ Sbjct: 1015 MKHSQSWDIVHAQNSAIKQHEELQEEINERLNSSQSYPWTLLCRLDAAKFFSDIIESILG 1074 Query: 125 ALYLD--GGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 A+++D G + F+++ + +R L K Q H ++ Y+ T Sbjct: 1075 AIFIDSQGSMSACEAFLERIGLMRYVRRVLSENIDFMHPK---QRLGHLANALSVRYE-T 1130 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCS 207 ++ R+ V + + G S Sbjct: 1131 KQTLESEARRWECTVRVGDEEIVRVGDGIS 1160 Score = 85.5 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 20/149 (13%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 F++ SL+ A+ SS +Y+RLEFLGD +L L S L EG L+ R Sbjct: 725 VKFSDLSLVLTAI--SSSVAREASNYQRLEFLGDSLLKLYTSIELAAKNLQWPEGLLTSR 782 Query: 75 FNSLVSAETCSQVARELDLASFIR------------------VSSDLRKDVCSFMTSIQA 116 + +VS ++ A E L FI + D T + A Sbjct: 783 KSHVVSNSHLAKAATETGLDRFILTKPFSGAKWRPSYNTDHVHAGDEEGSPRVMSTKVLA 842 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 DVVE+LI A +DG E + + + Sbjct: 843 DVVEALIGAANIDGADEKTLDCLKVFLPE 871 >gi|254572848|ref|XP_002493533.1| RNAase III [Pichia pastoris GS115] gi|238033332|emb|CAY71354.1| RNAase III [Pichia pastoris GS115] gi|328354643|emb|CCA41040.1| ribonuclease III [Pichia pastoris CBS 7435] Length = 524 Score = 99.4 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 58/224 (25%), Positives = 97/224 (43%), Gaps = 26/224 (11%) Query: 18 ANRSLLEKALTHSSISHSYQES--------YERLEFLGDRILGLLISTLLFNHFDSAKEG 69 + L K TH S +E YERLE+LGD +L L +++++ F ++ EG Sbjct: 168 TDPVLRSKVFTHKSAVTQAEEDSIEAANSSYERLEYLGDAVLELAVTSIVMKEFPASSEG 227 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAALY 127 LSV +VS ++ + +S + I AD+ E+ I ALY Sbjct: 228 HLSVCRQQIVSNSNLENYSKLYGFPEKLSSLMSKEE---TDKNNGKIYADIFEAYIGALY 284 Query: 128 LDGG--IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF-------GVTPEYKVT 178 + + + ++ K + +++ K +RD K+ L + A K P+Y VT Sbjct: 285 VQNNNDLTMIQEWLGKL-ARPVIEAMKMKRD-KSYLNKSAKEKLYALIGSAKSAPKY-VT 341 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP D + V VE+ G +G+ S + A AA L+ Sbjct: 342 LDNGPARD-EWLVQVEMEGEIIGKGIGGSVKDARTRAAMAALEN 384 >gi|296812107|ref|XP_002846391.1| dicer-like protein 2 [Arthroderma otae CBS 113480] gi|238841647|gb|EEQ31309.1| dicer-like protein 2 [Arthroderma otae CBS 113480] Length = 1437 Score = 99.4 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 102/282 (36%), Gaps = 71/282 (25%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S +E I Y+F ++LL +L+H S + +Y+RLEFLGD IL +++ LF Sbjct: 1155 LSKIEPLIDYSFTKKALLATSLSHPS-NPISGMTYQRLEFLGDSILDSIVTRALFRSNKE 1213 Query: 66 AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99 ++ + +LV+A+ + + R + L ++ Sbjct: 1214 IPHQDMHLMRTALVNADYLAFLCMNTSTDEQREDVSASSIGKVEITSSTRRVSLWQYMSH 1273 Query: 100 SSDLR-----------------------KDVCSF---------MTSIQADVVESLIAALY 127 S+ L + + +D++ES++ A++ Sbjct: 1274 SAALDIANAQLATVRKFEELREKIDEALRSGTRYPWTLLLTLNAPKFFSDIIESILGAIF 1333 Query: 128 LD--GGIEVAGTFVDKY----WKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFR 180 +D G +E TF+ + + R L G K L + + +T +Y V+ Sbjct: 1334 IDSRGSVEACQTFLSRIGLMGYLNRVLDDGNIDFMHPKQRLGQIVQS---LTVKYIVSDV 1390 Query: 181 SGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLK 221 R+ + + Q S+ AE AA L+ Sbjct: 1391 H-KHGVMRWNCQILVGDQEICQINDGVSRIHAETKAAEIALE 1431 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 56/149 (37%), Gaps = 22/149 (14%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F + L+ A++ SS +Y+RLEFLGD L L S L EG LS + Sbjct: 980 FKDIQLVLTAISASSA--RESTNYQRLEFLGDSALKLHTSMQLLVDHPFWHEGLLSHKKG 1037 Query: 77 SLVSAETCSQVARELDLASFIRV--------------------SSDLRKDVCSFMTSIQA 116 ++S + E L FI + T A Sbjct: 1038 FIISNSRLWKATIETGLDRFILTACFTGAKWRPLYNSTYTANAGRVGKNSTREISTKTLA 1097 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 DVVE+LI A +DGG + A + + + Sbjct: 1098 DVVEALIGAAIVDGGEDKALHCLQVFLPE 1126 >gi|119182644|ref|XP_001242444.1| hypothetical protein CIMG_06340 [Coccidioides immitis RS] Length = 390 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 80/207 (38%), Gaps = 23/207 (11%) Query: 18 ANRSLLEKALTH-----SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +++L TH + + SY+RLE LGD L ++ + L+++ F + G +S Sbjct: 142 KDKTLETAVFTHQGEVHAQAPSAVHSSYDRLEILGDAYLEVIATRLIWDRFQTLPAGRMS 201 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD--- 129 LV ET +Q + +++++D+R +M ++ D+ E+ +AA+ L Sbjct: 202 QIRELLVKNETLAQFSERYGFDRRVKIATDIRSQAKRWM-KVKGDIFEAYVAAVILSDPV 260 Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G + ++ W ++ K L + K Y S P + Sbjct: 261 NGFNLVEEWLAHLWIPTLNHVQPENQAAHYKETLAKKVMGKGIKL-RY--INESPPVNRK 317 Query: 188 ----RFTVVVEISG-----LAPAQGMD 205 F + V ++G G Sbjct: 318 GGMQTFFIGVYLTGWGWQDQHLGSGSG 344 >gi|125526376|gb|EAY74490.1| hypothetical protein OsI_02382 [Oryza sativa Indica Group] Length = 256 Score = 99.0 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 23/181 (12%) Query: 7 STLEKRIG-YAFANRS--LLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLF 60 + +E+ +G Y+F + LLE ALTHS + ++RLEFLGD LGL +T+ + Sbjct: 22 AEVERALGGYSFRDGGALLLEDALTHSVHPRDEAGGRARHQRLEFLGDAALGLAFATIFY 81 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVAR----------------ELDLASFIRVSSDLR 104 +G+L+V ++ VS + ++VA + +++ F + L Sbjct: 82 RDDPGLDQGDLTVLRSANVSTQKLARVAVRRRLYPLLRRYNCAPQDHEVSRFTKSVEGLY 141 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEV-AGTFVDKYWKQRALKSGKFRRDAKTELQE 163 + AD+VE+++ A+YLD +++ V K + + D ++ L E Sbjct: 142 SGDPIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKLLCEPIITKKALLEDPESMLNE 201 Query: 164 W 164 Sbjct: 202 L 202 >gi|320040901|gb|EFW22834.1| RNase3 domain-containing protein [Coccidioides posadasii str. Silveira] Length = 390 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 80/207 (38%), Gaps = 23/207 (11%) Query: 18 ANRSLLEKALTH-----SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +++L TH + + SY+RLE LGD L ++ + L+++ F + G +S Sbjct: 142 KDKTLETAVFTHQGEVHAQAPSAVHSSYDRLEILGDAYLEVIATRLIWDRFQTLPAGRMS 201 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD--- 129 LV ET +Q + ++++SD+R +M ++ D+ E+ +AA+ L Sbjct: 202 QIRELLVKNETLAQFSERYGFDRRVKIASDIRSQAKRWM-KVKGDIFEAYVAAVILSDPV 260 Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G + ++ W ++ K L + K + S P + Sbjct: 261 NGFNLVEEWLAYLWIPTLNHVQPENQAAHYKETLAKKVMGKGIKL---RYINESPPINRK 317 Query: 188 ----RFTVVVEISG-----LAPAQGMD 205 F + V ++G G Sbjct: 318 GGMQTFFIGVYLTGWGWQDQHLGSGSG 344 >gi|303319323|ref|XP_003069661.1| RNase3 domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240109347|gb|EER27516.1| RNase3 domain containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 390 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 80/207 (38%), Gaps = 23/207 (11%) Query: 18 ANRSLLEKALTH-----SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +++L TH + + SY+RLE LGD L ++ + L+++ F + G +S Sbjct: 142 KDKTLETAVFTHQGEVHAQAPSAVHSSYDRLEILGDAYLEVIATRLIWDRFQTLPAGRMS 201 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD--- 129 LV ET +Q + ++++SD+R +M ++ D+ E+ +AA+ L Sbjct: 202 QIRELLVKNETLAQFSERYGFDRRVKIASDIRSQAKRWM-KVKGDIFEAYVAAVILSDPV 260 Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G + ++ W ++ K L + K + S P + Sbjct: 261 NGFNLVEEWLAYLWIPTLNHVQPENQAAHYKETLAKKVMGKGIKL---RYINESPPINRK 317 Query: 188 ----RFTVVVEISG-----LAPAQGMD 205 F + V ++G G Sbjct: 318 GGMQTFFIGVYLTGWGWQDQHLGSGSG 344 >gi|302694007|ref|XP_003036682.1| hypothetical protein SCHCODRAFT_102832 [Schizophyllum commune H4-8] gi|300110379|gb|EFJ01780.1| hypothetical protein SCHCODRAFT_102832 [Schizophyllum commune H4-8] Length = 1489 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 79/192 (41%), Gaps = 34/192 (17%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 ++ IG LL ALTH++ + S +YER+EFLGD +L + ++ + Sbjct: 1216 VQSVIGQKLNKPELLALALTHAN-NSSPLGNYERIEFLGDALLDFQVVEYVYRKYTQQPP 1274 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI------------- 114 L++ +++V + + E L + S +++ + +++T++ Sbjct: 1275 SVLTLLKSAMVGNSPLAAICAESGLYRHLHQKSHQIQQSINTYLTALQKAKQKEYAAADD 1334 Query: 115 ------------QADVVESLIAALYLDGGIEVA------GTFVDKYWKQRALKSGKFRRD 156 +D+VES++ A+Y+ +E F+ ++ ++ ++ Sbjct: 1335 DLRERGQYWFDALSDIVESIVGAIYISDDLEWTGVQQLFKHFLQPFY-EKHIRMNTLAVH 1393 Query: 157 AKTELQEWAHAK 168 L E ++ Sbjct: 1394 PTKILLELVQSQ 1405 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 6/88 (6%) Query: 15 YAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF-NHFDSAKEGE 70 F + LL ALT S + +YERLE GD L L S LF + EG+ Sbjct: 986 IHFNHIIAEDLLHAALTTPSAG--FDRNYERLELYGDAFLKYLASLHLFVMSHHNDSEGK 1043 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIR 98 L L+S + + + L L SF+ Sbjct: 1044 LHAARRPLISNQKLMECSLALGLPSFVI 1071 >gi|290989569|ref|XP_002677410.1| hypothetical protein NAEGRDRAFT_48963 [Naegleria gruberi] gi|284091017|gb|EFC44666.1| hypothetical protein NAEGRDRAFT_48963 [Naegleria gruberi] Length = 1214 Score = 98.6 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 6/127 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+ IGY F N L H S+ + +YE LEF+GD +L L +S +F++F Sbjct: 1024 KELERIIGYKFKNILYAYYTLIHPSVDIGFNVNYETLEFVGDAVLDLYVSRTMFHNF-YL 1082 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 + E+ ++ V ++A++ + + V DL+ +DV+E+LI A+ Sbjct: 1083 DQSEMHTFRSNFVRNTALEKIAKDFRIDQLLFVKKDLK-----LKAKSISDVMEALIGAV 1137 Query: 127 YLDGGIE 133 LD ++ Sbjct: 1138 ALDSNLD 1144 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 38/192 (19%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 GY N S L A+TH + S + +YER EF GD IL + + F + Sbjct: 850 GY--INLSELRNAITHRT-SQNLDTNYERYEFFGDTILKYAVVLDIVLRFPFENMKFYNE 906 Query: 74 RFNSLVSAETCSQVARELDLASF-------------IRVSSDLRKDVCSFMTSIQADVVE 120 + VS ++A++L + F I S ++ ++AD++E Sbjct: 907 EKTAKVSNSNLRKLAQKLSIMDFFIETQYYHHNVAGIAFSKSEQEASVKGK-KVRADIIE 965 Query: 121 SLIAAL---YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY-- 175 SLI + ++ G+++A K K++ + KF ++ PEY Sbjct: 966 SLIGLVGKHSIEEGVKLARDL--KLVKKQNFIADKFILNS--------------NPEYVK 1009 Query: 176 KVTFRSGPDHDP 187 ++ + PD + Sbjct: 1010 RIIENTIPDIEK 1021 >gi|126177989|ref|YP_001045954.1| ribonuclease III [Methanoculleus marisnigri JR1] gi|125860783|gb|ABN55972.1| RNAse III [Methanoculleus marisnigri JR1] Length = 156 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 5/138 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHFD 64 +E+RIGY F +R+LLE+ALT + + + + L LGD + + Sbjct: 14 IEERIGYTFKDRALLERALTRLAYTLEAGIPPETHMDALATLGDAV-INVAVVEAVVAGG 72 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + +G +S R +LV+ +A +LDLA ++R + A+ +E+L+ Sbjct: 73 AHDKGAISNRKMNLVNMTRLRGLAEDLDLADYVRWGKGEAAQRVWTSGRVLAECLEALVG 132 Query: 125 ALYLDGGIEVAGTFVDKY 142 A+YLDGG++ A + + Sbjct: 133 AVYLDGGMDAAAGVLRRL 150 >gi|115401870|ref|XP_001216523.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114190464|gb|EAU32164.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 1635 Score = 98.2 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 58/278 (20%), Positives = 109/278 (39%), Gaps = 76/278 (27%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +L++ +GY F N +LL +ALTH S S + +SY+RLEFLGD +L +++ + +H Sbjct: 1066 SLKQHLGYTFVNEALLVEALTHPSCRSDASTQSYQRLEFLGDAVLDMVVVHAMAHHAVEC 1125 Query: 67 KEGELSVRFNSLVSAETCSQVARE---------------------------LDLASFIRV 99 +GE+++ ++L +A + E ++L F+R Sbjct: 1126 PQGEMTMIKHALTNANLLAFFCMEFVVAQEHTDVDAVPAAGGFALRSEQKPIELWRFMR- 1184 Query: 100 SSDLRKDVCSFMTSIQ----------------------------------ADVVESLIAA 125 D+ + ++ +D+VES++ A Sbjct: 1185 --SEALDLNNARETVLHRHSQLRAEIVHALHHGAQYPWQALSQLNADKFFSDIVESILGA 1242 Query: 126 LYLD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +++D G ++V FV++ + +R L + Q + + T + +V Sbjct: 1243 IFVDSRGDLDVCAMFVERIGLLPYLRRILADRVDVMHPRHTAQRLSKGEALFTAK-RVVD 1301 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAA 216 SG + VV+ + C S AE AA Sbjct: 1302 GSGNA---SYRCVVKRNKEEIVVVEGCLSSEEAEVKAA 1336 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 19/159 (11%) Query: 7 STLEKRI--GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L + I F++ + A++ + Y+R EF GD +L +S L+ Sbjct: 891 TRLCETILQDVQFSSTRHVITAISAPTAQSPT--DYQRYEFFGDSVLKFTVSCQLYMQHP 948 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV--------------SSDLRKDVCS- 109 + EG LS + +V ++ A ++ L +FI + Sbjct: 949 NWPEGYLSEGRDEIVQNNRLARAALDVGLDAFILTRRFTPRKWTAPLISEKAVEVAGKRP 1008 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 + + ADVVESLI A Y+DGG A T + + + + Sbjct: 1009 LSSKVLADVVESLIGAAYMDGGQAKAHTCIRRLLPEIEI 1047 >gi|115437482|ref|NP_001043306.1| Os01g0551100 [Oryza sativa Japonica Group] gi|75105855|sp|Q5JK90|RTL1_ORYSJ RecName: Full=Ribonuclease 3-like protein 1; AltName: Full=Ribonuclease III-like protein 1; Short=RNase III-like protein 1 gi|57900069|dbj|BAD88131.1| unknown protein [Oryza sativa Japonica Group] gi|57900480|dbj|BAD87969.1| unknown protein [Oryza sativa Japonica Group] gi|113532837|dbj|BAF05220.1| Os01g0551100 [Oryza sativa Japonica Group] gi|215695480|dbj|BAG90671.1| unnamed protein product [Oryza sativa Japonica Group] Length = 256 Score = 98.2 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 23/181 (12%) Query: 7 STLEKRIG-YAFANRS--LLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLF 60 + +E+ +G Y+F + LLE ALTHS + ++RLEFLGD LGL +T+ + Sbjct: 22 AEVERALGGYSFRDGGALLLEDALTHSVHPRDEAGGRARHQRLEFLGDAALGLAFATIFY 81 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVAR----------------ELDLASFIRVSSDLR 104 +G+L+V ++ VS + ++VA + +++ F + Sbjct: 82 RDDPGLDQGDLTVLRSANVSTQKLARVAVRRRLYPLLRRYNCAPQDHEVSRFTKSVEGPY 141 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEV-AGTFVDKYWKQRALKSGKFRRDAKTELQE 163 + AD+VE+++ A+YLD +++ V K + + D ++ L E Sbjct: 142 SGDPIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKLLCEPIITKKALLEDPESMLNE 201 Query: 164 W 164 Sbjct: 202 L 202 >gi|145540581|ref|XP_001455980.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|74834199|emb|CAI44479.1| Dicer-like ribonuclease with helicase and Rnase III domains [Paramecium tetraurelia] gi|124423789|emb|CAK88583.1| unnamed protein product [Paramecium tetraurelia] Length = 1797 Score = 98.2 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 46/253 (18%), Positives = 83/253 (32%), Gaps = 77/253 (30%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI-------------------------------- 32 ++LE IGY F ++S+L +A+TH S Sbjct: 1499 NLNSLENIIGYKFNDQSILIQAITHQSFLSVLDFYNYRKCKCNFVEFQNTKNILQISNLN 1558 Query: 33 ---------------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 + SYERLEFLGD +L ++ L F+ K +L+++ Sbjct: 1559 QNDINESLLTQLNQQQNRIDMSYERLEFLGDSVLDSVVVEWLVKEFNKEKVEDLALKKQC 1618 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT------------------------- 112 +V + + V L F+ + + + T Sbjct: 1619 VVCNKALALVTLHYKLDQFLLHPTLHKVAHENHQTLNKIKQMYNEYYDDISKMYTSEPII 1678 Query: 113 SIQADVVESLIAALYLDGGI--EVAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHA 167 I DV ES++ A+++D ++ V K + Q + ++ + L + Sbjct: 1679 KILGDVFESIVGAIFVDSSFNYDLTKQVVFKLLMPFMQHFTSPNQIIKNPQDRLFRYFKG 1738 Query: 168 KFGVTPEYKVTFR 180 K E +T Sbjct: 1739 KNQAEFEIVMTDE 1751 Score = 51.6 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 2/92 (2%) Query: 10 EKRIGYAFANR--SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 ++ Y+ + LL K + Q +Y+ LEFLGD L LL S +F F A Sbjct: 1292 QRNFKYSIHDIDNELLHKCFQSQQFNQDDQTNYQVLEFLGDANLKLLSSIEVFVQFPFAN 1351 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRV 99 E L + +VS E + + + I+ Sbjct: 1352 EHLLHLERARIVSNENLRKFSIIHRFFNCIKC 1383 >gi|158706443|sp|Q0CEI2|DCL2_ASPTN RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl2; Includes: RecName: Full=ATP-dependent helicase dcl2 Length = 1377 Score = 98.2 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 58/278 (20%), Positives = 109/278 (39%), Gaps = 76/278 (27%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +L++ +GY F N +LL +ALTH S S + +SY+RLEFLGD +L +++ + +H Sbjct: 1092 SLKQHLGYTFVNEALLVEALTHPSCRSDASTQSYQRLEFLGDAVLDMVVVHAMAHHAVEC 1151 Query: 67 KEGELSVRFNSLVSAETCSQVARE---------------------------LDLASFIRV 99 +GE+++ ++L +A + E ++L F+R Sbjct: 1152 PQGEMTMIKHALTNANLLAFFCMEFVVAQEHTDVDAVPAAGGFALRSEQKPIELWRFMR- 1210 Query: 100 SSDLRKDVCSFMTSIQ----------------------------------ADVVESLIAA 125 D+ + ++ +D+VES++ A Sbjct: 1211 --SEALDLNNARETVLHRHSQLRAEIVHALHHGAQYPWQALSQLNADKFFSDIVESILGA 1268 Query: 126 LYLD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +++D G ++V FV++ + +R L + Q + + T + +V Sbjct: 1269 IFVDSRGDLDVCAMFVERIGLLPYLRRILADRVDVMHPRHTAQRLSKGEALFTAK-RVVD 1327 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAA 216 SG + VV+ + C S AE AA Sbjct: 1328 GSGNA---SYRCVVKRNKEEIVVVEGCLSSEEAEVKAA 1362 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 19/159 (11%) Query: 7 STLEKRI--GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L + I F++ + A++ + Y+R EF GD +L +S L+ Sbjct: 917 TRLCETILQDVQFSSTRHVITAISAPTAQSPT--DYQRYEFFGDSVLKFTVSCQLYMQHP 974 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV--------------SSDLRKDVCS- 109 + EG LS + +V ++ A ++ L +FI + Sbjct: 975 NWPEGYLSEGRDEIVQNNRLARAALDVGLDAFILTRRFTPRKWTAPLISEKAVEVAGKRP 1034 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 + + ADVVESLI A Y+DGG A T + + + + Sbjct: 1035 LSSKVLADVVESLIGAAYMDGGQAKAHTCIRRLLPEIEI 1073 >gi|225563402|gb|EEH11681.1| dicer-like protein [Ajellomyces capsulatus G186AR] Length = 1436 Score = 98.2 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 91/264 (34%), Gaps = 66/264 (25%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY F + L +A TH S S SY+RLEF+GD IL +I LFN + Sbjct: 1097 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVYHLFNAPRT 1156 Query: 66 AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99 ++ + +L +A+ + + ++ L ++R Sbjct: 1157 FPHFDMHLMRTALANADFLAFLCIGMSTERVRGEIAECSKENTSTTLTTHKVSLWQYMRH 1216 Query: 100 SSDLRKDVCSFMTSIQ--------------------------------ADVVESLIAALY 127 + T+ Q +D++ES++ A++ Sbjct: 1217 GTSWELTAAQQQTANQYETLQADISEALEGSHTYPWTLLSRLHAQKFFSDLIESVLGAIF 1276 Query: 128 LD--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTEL-QEWAHAKFGVTPEYKVTF 179 +D G ++ F+++ + ++ + K L +E K E+ V Sbjct: 1277 IDSHGSLDACTAFLERIGLMKFLRRMLVDEDMDFMHPKQRLGEEVGTRKVRYEAEHVVDE 1336 Query: 180 RSGPDHDPRFTVVVEISGLAPAQG 203 G +T V + + Sbjct: 1337 EGGIGTLGYWTCKVFVGDECVVEA 1360 Score = 79.7 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 20/149 (13%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 AF + SL+ A++ +S++ +Y+R+EFLGD IL + L EG LS Sbjct: 922 VAFTDLSLVITAIS-ASVAREAT-NYQRIEFLGDSILKFQTTLQLTAANPIWHEGLLSRA 979 Query: 75 FNSLVSAETCSQVARELDLASFIRV----------------SSDLRKDVCSF--MTSIQA 116 +++VS + S A E L FI + +DV T A Sbjct: 980 KDTVVSNKRLSYAAIETGLDKFILLDVFTGAKWRPPCNKDHLESEEQDVPQREMSTKTLA 1039 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 DVVE+L+AA LDGG A ++ + + Sbjct: 1040 DVVEALLAAATLDGGQRKAEKCLEIFLPE 1068 >gi|321454554|gb|EFX65720.1| hypothetical protein DAPPUDRAFT_117031 [Daphnia pulex] Length = 322 Score = 97.8 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 31/221 (14%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLIS--- 56 ++ + L ++IGY F N++LL +A+THS+ + + S E E LGD LG + Sbjct: 66 TSFSLTALPEKIGYKFRNKNLLGRAMTHSTANQTKCPSQDGENFEVLGDVALGNFFAMAR 125 Query: 57 -------TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 LL + + +G+LS+ +++ +T + + I S++ + Sbjct: 126 VNHTVVLELLLDLNPNYNQGQLSLLKSAITCNDTFADL--------VIIPSAEGYRANEI 177 Query: 110 FMTSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 I AD E+LI AL +D E + V K + LQ Sbjct: 178 DYPEIYADAFEALIGALRIDCEREDRIIRRVVLNLMDDVIKKYTREV--PICPLQ----- 230 Query: 168 KFGVTPEYKVTFRSGPD-HDPRFTVVVEISGLAPAQGMDCS 207 + TP KV FR P+ D F V++++ G S Sbjct: 231 RIRQTPL-KVNFRERPNLPDGSFHVLLDVQNKQYFHGSGPS 270 >gi|315049207|ref|XP_003173978.1| double-strand-specific pac1 ribonuclease [Arthroderma gypseum CBS 118893] gi|311341945|gb|EFR01148.1| double-strand-specific pac1 ribonuclease [Arthroderma gypseum CBS 118893] Length = 397 Score = 97.8 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 27/229 (11%) Query: 23 LEKA-LTHSSI-------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 L+ A TH+ I + + +++Y+RLE LGD + L+ + L++ +F + G+++ Sbjct: 138 LKTAVFTHTGIMERGPISTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPAGKIAQA 197 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD---GG 131 ++V ET ++ A ++ SSD+R V T + DV E+ +AA + GG Sbjct: 198 RETMVKNETLAEYAIAYGFDQRLKTSSDIR-SVPKRWTKVMGDVFEAYVAAAIIADPKGG 256 Query: 132 IEVAGTFVDKYWKQRA------LKSGKFRRDAKTELQEWAHAK---FGVTPEYKVTF-RS 181 ++ +++ + W + L S + +K L++ A G+ +Y R Sbjct: 257 LQAVESWLTQLWLPKLAEVKVPLASVALAQGSKASLKDKLAATVMSRGIKLQYLDEKPRQ 316 Query: 182 GPDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + V ++G G SK A AA L + + Sbjct: 317 REGGLVTSFIGVYLTGWGYEKKLLGSGSGLSKSEAGNEAALNALNNKPL 365 >gi|302412551|ref|XP_003004108.1| ribonuclease [Verticillium albo-atrum VaMs.102] gi|261356684|gb|EEY19112.1| ribonuclease [Verticillium albo-atrum VaMs.102] Length = 426 Score = 97.5 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 92/241 (38%), Gaps = 41/241 (17%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + L TH + +YERLE+LGD ++ S+LLF F G+LS L Sbjct: 162 DPKLETAVFTH--YTVGPGLNYERLEWLGDAYAEIISSSLLFRTFGGFSSGKLSQLRELL 219 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGIEVA 135 + Q + + L +R + + K + DV ES +AA+ L + G++ A Sbjct: 220 ICNANLGQYSAQYGLVDRVR-APEEVKASKEKWKKVPGDVFESYVAAVILSDPENGLQRA 278 Query: 136 GTFVDKYW----------------KQRALKSGKFR------RDAKTELQEWAHAKFGVTP 173 G ++ + + L+ G +AK L + AK Sbjct: 279 GEWLKALFSMTIKHQISTISNKPEHRAVLEMGDQSLLPDKVLNAKVRLGQLIGAKGISL- 337 Query: 174 EYKVTFRSGPDHD---PRFTVV---VEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+ SGP D R TV + + G +G D +K+ A Q AA L Sbjct: 338 RYE-DDISGPKFDKFNKRLTVHGVNLYLDGWGEKNKWLGKGTDINKKEAGQKAAQMALDN 396 Query: 223 E 223 + Sbjct: 397 K 397 >gi|154319367|ref|XP_001559001.1| hypothetical protein BC1G_02635 [Botryotinia fuckeliana B05.10] gi|150857066|gb|EDN32258.1| hypothetical protein BC1G_02635 [Botryotinia fuckeliana B05.10] Length = 425 Score = 97.1 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 84/247 (34%), Gaps = 43/247 (17%) Query: 19 NRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + +L + TH ++ YERLE++GD + + + L+ F + G+ S Sbjct: 148 DPTLELASFTHHGRTNGSVTDLSYERLEWVGDAYIYTISTLLISQTFPALLPGKCSQLRE 207 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCS-FMTSIQADVVESLIAALYL---DGGI 132 LV T + AR+ ++ D + D+ E+ +AA+ L + G+ Sbjct: 208 RLVKNVTLADFARKYGFEKRAKLPEDTIHPMKEPEKIKAMGDIFEAYVAAIVLADPENGV 267 Query: 133 EVAGTFVDKYW--------KQRALKSGKFR--------------------RDAKTELQEW 164 A ++ W +Q K + K +LQ Sbjct: 268 SRASEWLKSLWAMVLSKEIQQEERNEDKLDSPLWRLRGNVDHVQTKTKTVLNPKEKLQMA 327 Query: 165 AHAKFGVTPEYKVTFRSGPDHD---PRFTVVVEISG-----LAPAQGMDCSKRAAEQVAA 216 ++K YK + D + FTV V + G G K+ A AA Sbjct: 328 LNSKVSKL-TYKDIGTAKKDKNTKLAVFTVGVFLDGWGEVDKQIGFGSANGKKEAGFKAA 386 Query: 217 AEVLKRE 223 L + Sbjct: 387 EMALNNK 393 >gi|168046558|ref|XP_001775740.1| predicted protein [Physcomitrella patens subsp. patens] gi|162672892|gb|EDQ59423.1| predicted protein [Physcomitrella patens subsp. patens] Length = 792 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 80/225 (35%), Gaps = 35/225 (15%) Query: 5 RYSTLEKRIGYAFANRSLLEKAL--------THSSISHSYQESYERLEFLGDRILGLLIS 56 TLEK+IGY F +SLL A T S + + ++RLEFLGD +L LI Sbjct: 539 DIVTLEKKIGYQFKCKSLLLSAFDYGDEVTFTQSGVPRGSFQ-FQRLEFLGDSVLDFLIM 597 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDV-------- 107 + + +L+ + V++E + A ++ R+S LR ++ Sbjct: 598 RHFVQLYSAFNPEQLNDLRQATVNSENFACTAIRHGFHHYLKRMSPILRDEIELYAASVH 657 Query: 108 ----------CSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156 D++++L ++ LD + + V K R Sbjct: 658 REGGSPFGIPSRASPKAIGDLMQTLAGSILLDSNFDHDLVWKVLKPLLSPLATPKTVMRH 717 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + L+ H + E + G V I+ + A Sbjct: 718 PRRLLEALCHKQDLKL-ELQTIQLEGA-----VEARVYINQICVA 756 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 54/166 (32%), Gaps = 26/166 (15%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 ++ALT S + SYE LE LGD +L + ++ F S L + LVS Sbjct: 374 QEALT--SGACEGNHSYETLELLGDSVLNFIGGVHMYIDFPSCTSELLHSYRHDLVSNRN 431 Query: 84 CSQVARELDLASFIRV-----------SSDLRK------DVCSFMTSIQADVVESLIAAL 126 + L +I L D ADVVE+LI Sbjct: 432 LYKCGLACGLPGYIFAELLNTKTWVPPGPALEDLPQKSPDGQVIGLKTLADVVEALIGVT 491 Query: 127 YLDGGIEVAGT---FVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 +L G + A ++ D +QE A+ Sbjct: 492 FLHGDLNSAVKTMVWLQVPIPFPEKIPEVIIAD----IQELMEARN 533 >gi|307109321|gb|EFN57559.1| hypothetical protein CHLNCDRAFT_143199 [Chlorella variabilis] Length = 2232 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 88/248 (35%), Gaps = 52/248 (20%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI--------- 55 +E +G+ FA++ L+ +ALTH S S ++RLEFLGD +L L+ Sbjct: 1924 DVGAIEAVLGHTFASKWLVVEALTHCSWPGSGVRCFQRLEFLGDAVLDALMHDMRSVAVN 1983 Query: 56 -STLLFNHFDSAK--EGELSVRFNSLVSAETCSQVA-----------------------R 89 S L + E +L + E + A R Sbjct: 1984 ASRLAYAGKPGLDFVEEWRDRLREALEAQEQQACPASPAGGTAGAAAGDADAAASKEALR 2043 Query: 90 ELDLASFIRVSSDLR-----KDVCSFMT---------SIQADVVESLIAALYLDGGIEVA 135 +L+ + + + K ++ +DVVESLI A+++D G ++ Sbjct: 2044 AAELSVMTQFAFGFQTIQAPKASGRDQPPSPALHCLQTVLSDVVESLIGAVFVDTGGDMG 2103 Query: 136 GTF-VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + V + + LQE + GV P+Y+ R R V V Sbjct: 2104 RVWEVTQRLLDPMVVPETLPVHPIRRLQELVQ-RCGVNPKYEEAGRE-QGGAGRVHVKVS 2161 Query: 195 ISGLAPAQ 202 G+ + Sbjct: 2162 AQGVVLGE 2169 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 5/105 (4%) Query: 42 RLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101 RLE LGD L +S LF+ EG+L+ R +V+ ++ A +L L +RV Sbjct: 1765 RLETLGDAFLKFAVSAQLFSAHRQYHEGQLTKRKELVVANIHLAEAAVKLGLDRRLRVLP 1824 Query: 102 DLRKD-----VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 + + + AD +E+L+ A + GG A F+ Sbjct: 1825 FSMHNWASPEAVRKSSKVLADAMEALLGAFLVAGGYPAALAFLQA 1869 >gi|296817299|ref|XP_002848986.1| RNase3 domain-containing protein [Arthroderma otae CBS 113480] gi|238839439|gb|EEQ29101.1| RNase3 domain-containing protein [Arthroderma otae CBS 113480] Length = 378 Score = 96.7 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 91/234 (38%), Gaps = 34/234 (14%) Query: 18 ANRSLLEKALTH-------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + L TH S ++SY+RLE LGD + L+ + L++ +F + G+ Sbjct: 116 KDEGLKSAVFTHTGIVERGPGSSLCSEKSYDRLEVLGDAYIELISTRLIWENFPTLPAGK 175 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD- 129 ++ ++V ET +Q A ++ +SD R V T I+ DV E+ +AA + Sbjct: 176 MAQARETMVKNETLAQYATAYGFDELLKTTSDYR-SVPKRWTKIRGDVFEAYVAAAIISD 234 Query: 130 --GGIEVAGTFVDKYWKQRALK-------SGKFRRD---AKTELQEWAHAKFGVTPEYKV 177 G+ +++ + W + +G + K +L +K G+ +Y Sbjct: 235 PKDGLRAVESWLTQLWLPKLADVKLPLPPAGPEHGNKISFKDKLAATVMSK-GIRLQY-- 291 Query: 178 TFRSGPDHDP----RFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222 P + F + V ++G G SK A AA L Sbjct: 292 IDEKPPQREGGLVTSF-IGVYLTGWGYERKHLGSGSGLSKTEAGNEAALRALNN 344 >gi|302664704|ref|XP_003023979.1| nucleolar RNAse III, putative [Trichophyton verrucosum HKI 0517] gi|291188003|gb|EFE43361.1| nucleolar RNAse III, putative [Trichophyton verrucosum HKI 0517] Length = 452 Score = 96.7 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 26/232 (11%) Query: 19 NRSLLEKALTHSSI-------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 + SL TH+ I + + +++Y+RLE LGD + L+ + L++ +F + G++ Sbjct: 188 DESLKTAVFTHTGIMERGPVSTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPAGKI 247 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-- 129 + ++V ET ++ A ++ SSD+ K+V T + DV E+ +AA + Sbjct: 248 AQARETMVKNETLAEYAIAYGFDRLLKTSSDI-KNVPKRWTKVMGDVFEAYVAAAIIADP 306 Query: 130 -GGIEVAGTFVDKYWKQRA------LKSGKFRRDAKTELQEWAHAK---FGVTPEYKVTF 179 GG++ +++ + W + L S + +K ++ A G+ +Y Sbjct: 307 KGGLQAVESWLTQLWLPKLAEVKVPLASVTLAQGSKASFKDKLAATVMSRGIKLQYLEEK 366 Query: 180 -RSGPDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 R + ++G G SK A AA L + + Sbjct: 367 PRQREGGLVTSFIGAYLTGWGYEKKLLGSGSGLSKSEAGNEAALNALNNKPL 418 >gi|284050833|ref|ZP_06381043.1| ribonuclease III [Arthrospira platensis str. Paraca] Length = 120 Score = 96.7 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 5/105 (4%) Query: 5 RYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +R+G + ++ LL+ ALTH S+S Q++YE+LEF+GD ++ L S LLF Sbjct: 15 QLEKLIERLGLSPQHKIAWQLLDLALTHPSVSS--QDNYEQLEFVGDSVVRLAASELLFE 72 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 + +A GE + + LVS ++++ L ++ V +D Sbjct: 73 TYPNAPVGEFAAVRSILVSDRILAEISESYGLGRYLLVGGSATRD 117 >gi|302506394|ref|XP_003015154.1| nucleolar RNAse III, putative [Arthroderma benhamiae CBS 112371] gi|291178725|gb|EFE34514.1| nucleolar RNAse III, putative [Arthroderma benhamiae CBS 112371] Length = 399 Score = 96.7 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 26/232 (11%) Query: 19 NRSLLEKALTHSSI-------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 + SL TH+ I + + +++Y+RLE LGD + L+ + L++ +F + G++ Sbjct: 135 DESLKTAVFTHTGIMERGPVSTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPAGKI 194 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-- 129 + ++V ET ++ A ++ SSD+ K V T + DV E+ +AA + Sbjct: 195 AQARETMVKNETLAEYAIAYGFDRLLKTSSDI-KSVSKRWTKVMGDVFEAYVAAAIIADP 253 Query: 130 -GGIEVAGTFVDKYWKQRA------LKSGKFRRDAKTELQEWAHAK---FGVTPEYKVTF 179 GG++ +++ + W + L S + +K ++ A G+ +Y Sbjct: 254 KGGLQAVESWLTQLWLPKLAEVKVPLASVTLAQGSKASFKDKLAATVMSRGIKLQYLEEK 313 Query: 180 -RSGPDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 R + ++G G SK A AA L + + Sbjct: 314 PRQREGGLVTSFIGAYLTGWGYEKKLLGSGSGLSKSEAGNEAALNALNNKPL 365 >gi|258614465|ref|ZP_05712235.1| ribonuclease III [Enterococcus faecium DO] Length = 97 Score = 96.3 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 4/97 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M L++ F + +LLE+A THSS + ++ ERLEFLGD +L L++S Sbjct: 1 MDNQLTKELKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 LF + EG+L+ + S ++ + + L Sbjct: 61 QYLFRLYPHLPEGKLTKNTSCDRSRRQLVEICQRMSL 97 >gi|327301473|ref|XP_003235429.1| RNase3 domain-containing protein [Trichophyton rubrum CBS 118892] gi|326462781|gb|EGD88234.1| RNase3 domain-containing protein [Trichophyton rubrum CBS 118892] Length = 399 Score = 96.3 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 95/232 (40%), Gaps = 26/232 (11%) Query: 19 NRSLLEKALTHSSI-------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 + SL TH+ I + + +++Y+RLE LGD + L+ + L++ +F + G++ Sbjct: 135 DESLKTAVFTHTGIMERGPISTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPAGKI 194 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-- 129 + ++V ET ++ A ++ SSD+ K V T + DV E+ +AA + Sbjct: 195 AQARETMVKNETLAEYAVAYGFDQLLKTSSDI-KSVPKRWTKVMGDVFEAYVAAAIIADP 253 Query: 130 -GGIEVAGTFVDKYWKQRA------LKSGKFRRDAKTELQEWAHAK---FGVTPEYKVTF 179 GG+ +++ + W + L S + +K ++ A G+ +Y Sbjct: 254 KGGLRAVESWLTQLWLPKLAEVKVPLASVTLAQGSKASFKDKLAATVMSRGIKLQYLEEK 313 Query: 180 -RSGPDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 R + ++G G SK A AA L + + Sbjct: 314 PRQREGGLVTSFIGAYLTGWGYEKKLLGSGSGLSKSEAGNEAALNALNNKPL 365 >gi|307110681|gb|EFN58917.1| hypothetical protein CHLNCDRAFT_140869 [Chlorella variabilis] Length = 171 Score = 95.9 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 11/138 (7%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S LE+R+ Y F N L+ AL H S + + RL +LGD +LG +S LL+ Sbjct: 16 SDAEVKALEQRLNYNFNNTWGLKLALVHPSYG---ELNNARLTWLGDAVLGAAVSDLLYQ 72 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD---- 117 A L ++V + C+ AR+L L + V ++ A Sbjct: 73 ALPDATIAGLHDHRMAIVRRKACAAAARKLGLDRLLVVGKGYE--GAEPTMAMLAGERCR 130 Query: 118 --VVESLIAALYLDGGIE 133 E++ A+Y D G + Sbjct: 131 RHCFEAVWGAIYEDAGFQ 148 >gi|164657402|ref|XP_001729827.1| hypothetical protein MGL_2813 [Malassezia globosa CBS 7966] gi|159103721|gb|EDP42613.1| hypothetical protein MGL_2813 [Malassezia globosa CBS 7966] Length = 388 Score = 95.5 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 78/242 (32%), Gaps = 39/242 (16%) Query: 21 SLLEKALTHSSISH----------------------SYQESYERLEFLGDRILGLLISTL 58 +LL A TH S+ + +L +G+ +LGLL S Sbjct: 88 ALLRVACTHPSVLSVQQTASSLPMSLQERQQVRELQETIQHNAQLSTIGNSLLGLLTSEY 147 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELD-LASFI-RVSSDLRKDVCSFMTS--- 113 + L ++ T + V EL LA + R + Sbjct: 148 FHLKYPHLPTRVLKAFVSAYAGPSTLADVGAELGVLAQGVQRWDRTGASSITRRTPRGGT 207 Query: 114 ---------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQ 162 + A V +++A L+ + G+ FV + R L RD K L Sbjct: 208 TSVPLLSKDVAAQSVRAIVAVLFQELGMPAVRGFVHSHLLSRRLDLASLLKFRDPKRVLS 267 Query: 163 EWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P+ ++ +G P F V V + +G S R AE AA + L+ Sbjct: 268 STCKKYGKPAPQSRMLAETGRLSIHPVFVVGVYSGAIQLGEGTGSSIRMAEFRAAEDALR 327 Query: 222 RE 223 R Sbjct: 328 RL 329 >gi|126659516|ref|ZP_01730648.1| ribonuclease III (rnc) [Cyanothece sp. CCY0110] gi|126619155|gb|EAZ89892.1| ribonuclease III (rnc) [Cyanothece sp. CCY0110] Length = 328 Score = 95.5 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 72/157 (45%), Gaps = 7/157 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFNHF 63 S ++++I + F N LL +L+ S + ERLE LG+ +L L+I L++HF Sbjct: 6 SLVQEKISFNFKNPELLFLSLSDPSYGKQINQPGSDNERLESLGETVLDLIIIDYLYHHF 65 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSFMTSI-QADVVES 121 +++ + L E + + L L + + + + +S +++ Sbjct: 66 PYLTISKMTALRDKLSEKERLTNLWFGLGLGESYPFLDVNEERHRLRVKSSNPFEKSLKA 125 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158 L+ A+++D G + +V+K L+ + ++D K Sbjct: 126 LVGAIHIDRGFSQSYNWVNKQLIAPLLE--RHQKDDK 160 >gi|225678617|gb|EEH16901.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03] Length = 314 Score = 95.5 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 15/157 (9%) Query: 19 NRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 ++SL TH ++ +++YERLE LGD + + + L+++ F + G Sbjct: 153 DKSLQTAIFTHEGVNDPTNTTTTTASTEKNYERLELLGDAYIEIFATRLVWDTFPRLRAG 212 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 LS LV ET ++ A L ++V++++R+ T ++ D+ E+ +AA+ L Sbjct: 213 RLSQIREMLVKNETLAEYATRYGLDRRLQVAAEIRRQ-AKTWTKVRGDLFEAYVAAVILS 271 Query: 130 G---GIEVAGTFVDKYWKQRA--LKSGKFRRDAKTEL 161 G+E+ ++ + W R ++ + K EL Sbjct: 272 HPKRGVEMVEEWLTQLWIPRLEGVERERPVLRYKEEL 308 >gi|159481710|ref|XP_001698921.1| dicer-like protein [Chlamydomonas reinhardtii] gi|158273413|gb|EDO99203.1| dicer-like protein [Chlamydomonas reinhardtii] Length = 5684 Score = 95.1 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 4/97 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE +GY F N L +ALTH S + Y+RLEFLGD +LGL++S +F+ Sbjct: 3492 ELEALLGYRFRNPDLCVQALTHVSHPRAAGCGGGYQRLEFLGDAVLGLVVSFWVFSA--G 3549 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 +S R LVS ++ A L L +R S Sbjct: 3550 GSAEAMSTRRRDLVSNGPLAEAAARLGLQRHLRAGSG 3586 Score = 36.2 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 9/100 (9%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 S +Y+RLEFLGD L LL + +E L + T Q Sbjct: 3090 PSCRDPGVGNYDRLEFLGDAAL-----KLLAQVYVFLRESRLPPPPHKPNPPTTHPQTLA 3144 Query: 90 ELDLASFIRVSSDLRK----DVCSFMTSIQADVVESLIAA 125 L +R+++ LR + + ++ A Sbjct: 3145 HHALGPRLRLAACLRALPLDPGRALRQAALQPDEDAASGA 3184 >gi|326468912|gb|EGD92921.1| RNase3 domain-containing protein [Trichophyton tonsurans CBS 112818] gi|326480108|gb|EGE04118.1| double-strand-specific pac1 ribonuclease [Trichophyton equinum CBS 127.97] Length = 399 Score = 94.8 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 95/232 (40%), Gaps = 26/232 (11%) Query: 19 NRSLLEKALTHSSI-------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 + SL TH+ I + + +++Y+RLE LGD + L+ + L++ +F + G++ Sbjct: 135 DESLKTAVFTHTGIMERGPVSTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPAGKI 194 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-- 129 + ++V ET ++ A ++ SSD+ K V T + DV E+ +AA + Sbjct: 195 AQARETMVKNETLAEYAIAYGFDQLLKTSSDI-KSVPKRWTKVMGDVFEAYVAAAIIADP 253 Query: 130 -GGIEVAGTFVDKYWKQRA------LKSGKFRRDAKTELQEWAHAK---FGVTPEYKVTF 179 GG+ +++ + W + L S + +K ++ A G+ +Y Sbjct: 254 KGGLRAVESWLSQLWLPKLAEVKVPLASVTLAQGSKASFKDKLAATVMSRGIKLQYLEEK 313 Query: 180 -RSGPDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 R + ++G G SK A AA L + + Sbjct: 314 PRQREGGLVTSFIGAYLTGWGYEKKLLGSGSGLSKSEAGNEAALNALNNKPL 365 >gi|75858914|ref|XP_868797.1| hypothetical protein AN9415.2 [Aspergillus nidulans FGSC A4] gi|40747690|gb|EAA66846.1| hypothetical protein AN9415.2 [Aspergillus nidulans FGSC A4] Length = 1073 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 64/128 (50%), Gaps = 4/128 (3%) Query: 23 LEKA-LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LE+A TH ++ + +Y+RLE LGD + L+ + L++N F G +S LV Sbjct: 120 LERAVFTHPGVAKDSRTTYDRLEILGDAYIELISTKLIWNKFQHIPSGRISQIRELLVKN 179 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG--GIEVAGTFV 139 ET ++ A + + V ++L ++ + D+ E+ +AA+ L G VA T++ Sbjct: 180 ETLAEYATQYGIDKKASVPAELYNQPKRWI-KTKGDIFEAYVAAVILSHPDGYSVAETWL 238 Query: 140 DKYWKQRA 147 + W + Sbjct: 239 SELWSPKL 246 >gi|134081603|emb|CAK46537.1| unnamed protein product [Aspergillus niger] Length = 1352 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 22/164 (13%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F++ + A+T S +Y+R EF GD +L +S LF + EG LS Sbjct: 892 EFSSIRHIITAITAPSAQSLT--NYQRYEFFGDSVLKFTVSCQLFFQHPNWHEGYLSEGR 949 Query: 76 NSLVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSF--MTSIQADVVE 120 + +V ++ A + L +FI +S + T + ADVVE Sbjct: 950 DEIVQNSRLARAALDAGLDAFIMNKMFTPRKWSAPLISEKISLTPKQRTMSTKVLADVVE 1009 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK-----SGKFRRDAKT 159 +LI A Y+DGG A + ++ + L+ + +D T Sbjct: 1010 ALIGASYIDGGFAAAHACIHRFLPEVNLENIDRTTAPMPKDGVT 1053 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFN 61 L L IGY F N+SLL ++LTH S + +SY+RLEFLGD +L + I + L + Sbjct: 1056 TLNDDHLMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQRLEFLGDAVLDMAIMSTLLS 1115 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 H +G ++ +++V+A + E L Sbjct: 1116 HPREIPQGLMTKIKHAVVNANLLAFFCMEFAL 1147 >gi|158706449|sp|A2R345|DCL21_ASPNC RecName: Full=Dicer-like protein 2-1; Includes: RecName: Full=Endoribonuclease dcl2-1; Includes: RecName: Full=ATP-dependent helicase dcl2-1 Length = 1387 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 22/164 (13%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F++ + A+T S +Y+R EF GD +L +S LF + EG LS Sbjct: 927 EFSSIRHIITAITAPSAQSLT--NYQRYEFFGDSVLKFTVSCQLFFQHPNWHEGYLSEGR 984 Query: 76 NSLVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSF--MTSIQADVVE 120 + +V ++ A + L +FI +S + T + ADVVE Sbjct: 985 DEIVQNSRLARAALDAGLDAFIMNKMFTPRKWSAPLISEKISLTPKQRTMSTKVLADVVE 1044 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK-----SGKFRRDAKT 159 +LI A Y+DGG A + ++ + L+ + +D T Sbjct: 1045 ALIGASYIDGGFAAAHACIHRFLPEVNLENIDRTTAPMPKDGVT 1088 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFN 61 L L IGY F N+SLL ++LTH S + +SY+RLEFLGD +L + I + L + Sbjct: 1091 TLNDDHLMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQRLEFLGDAVLDMAIMSTLLS 1150 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 H +G ++ +++V+A + E L Sbjct: 1151 HPREIPQGLMTKIKHAVVNANLLAFFCMEFAL 1182 >gi|242809985|ref|XP_002485488.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500] gi|218716113|gb|EED15535.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500] Length = 1420 Score = 94.0 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 95/274 (34%), Gaps = 81/274 (29%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +E+ +GY F S+L +ALTH ++ +Y+RLEFLGD +L + FNH + Sbjct: 1123 KLGQMEEILGYKFNKPSILFEALTHP-CANDGAPTYQRLEFLGDSLLDHFVVQEFFNHPE 1181 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR--------------------------ELDLASFIR 98 ++ + ++V+A + + ++ L +R Sbjct: 1182 KISHQDMHLMRTAVVNAHFLGFLCQSLYITEERSEPVSPGKAHISTISTEHKIYLWQLMR 1241 Query: 99 VSSDLRKDVCSFMTSIQ--------------------------------ADVVESLIAAL 126 + T + +D+VESL+ A+ Sbjct: 1242 HGASWEITNAQQETKARYEAWGPAVHDALMHSNKYPWADLFRINASKFFSDMVESLLGAI 1301 Query: 127 YLD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQE-----WAH------AKF 169 ++D G ++ + F+++ +R ++ +L E + Sbjct: 1302 FVDSKGSLDASRQFLERISLLPCLRRIIREEVLILHPFNQLHEAAISDKVQISHSVEKRL 1361 Query: 170 GVTPEYK-VTFRSGPDHDPRFTVVVEISGLAPAQ 202 +P ++ V G F V+++G + Sbjct: 1362 PTSPGFEDVVREDGL----VFICSVKVAGEEIVR 1391 Score = 84.7 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 17/147 (11%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 F N S + A++ SS + Y+R EFLGD +L L+ S L EG LS Sbjct: 952 VKFENLSHVLTAISASSAQEEH--DYQRYEFLGDSLLKLITSIHLVVKKPLWHEGLLSAE 1009 Query: 75 FNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSF--------------MTSIQADVV 119 +++VS + A +L L FI S RK ++ T ADVV Sbjct: 1010 KDTIVSNGRLHRTALDLGLDKFILTKSFTGRKWRPNYISQFETVTEEKRQMSTKTLADVV 1069 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR 146 E+L+ A +LDGG E + + ++ Sbjct: 1070 EALLGAAFLDGGYEKLESCAKIFLPEQ 1096 >gi|317035030|ref|XP_001400925.2| ATP-dependent helicase dcl2 [Aspergillus niger CBS 513.88] Length = 1407 Score = 94.0 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 22/164 (13%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F++ + A+T S +Y+R EF GD +L +S LF + EG LS Sbjct: 927 EFSSIRHIITAITAPSAQSLT--NYQRYEFFGDSVLKFTVSCQLFFQHPNWHEGYLSEGR 984 Query: 76 NSLVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSF--MTSIQADVVE 120 + +V ++ A + L +FI +S + T + ADVVE Sbjct: 985 DEIVQNSRLARAALDAGLDAFIMNKMFTPRKWSAPLISEKISLTPKQRTMSTKVLADVVE 1044 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK-----SGKFRRDAKT 159 +LI A Y+DGG A + ++ + L+ + +D T Sbjct: 1045 ALIGASYIDGGFAAAHACIHRFLPEVNLENIDRTTAPMPKDGVT 1088 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFN 61 L L IGY F N+SLL ++LTH S + +SY+RLEFLGD +L + I + L + Sbjct: 1091 TLNDDHLMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQRLEFLGDAVLDMAIMSTLLS 1150 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 H +G ++ +++V+A + E L Sbjct: 1151 HPREIPQGLMTKIKHAVVNANLLAFFCMEFAL 1182 >gi|212537171|ref|XP_002148741.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224] gi|210068483|gb|EEA22574.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224] Length = 1431 Score = 94.0 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 61/197 (30%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +E+ +GY F S+L +ALTH S S+ +Y+RLEFLGD +L + FNH + Sbjct: 1127 KLGQMEEMLGYKFNKPSILFEALTHPS-SNDGAPTYQRLEFLGDSLLDHFVVQEFFNHPE 1185 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR--------------------------ELDLASFIR 98 E+ + ++V+A + + +L L +R Sbjct: 1186 KLSHQEMHLMRTAVVNAHFLGFLCQSLYITEQRTEPVSPGKAHLSTISTDHKLYLWQLMR 1245 Query: 99 VSSDLRKDVCSFMTSIQ--------------------------------ADVVESLIAAL 126 + T + +D+VES++ A+ Sbjct: 1246 HGASWEVMNAQQETKTRYEAWGSAVHDALNHSKTYPWAALFRINASKFFSDMVESILGAI 1305 Query: 127 YLD--GGIEVAGTFVDK 141 ++D G ++V+ F+++ Sbjct: 1306 FVDSRGSMDVSRQFLER 1322 Score = 84.7 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 62/148 (41%), Gaps = 21/148 (14%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F+N + + A++ SS + Y+R EFLGD +L L+ S L + EG LS + Sbjct: 958 FSNLAHVLTAISASSA--HEENDYQRYEFLGDSLLKLITSIHLVVNNPLWHEGMLSAAKD 1015 Query: 77 SLVSAETCSQVARELDLASFIRVSS-----------------DLRKDVCSFMTSIQADVV 119 ++VS + A L L FI S K T ADVV Sbjct: 1016 TIVSNGRLYRTALNLGLDRFILTKSFTGRKWRPSYVSQFETVGEEKR--ELSTKTLADVV 1073 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA 147 ESL+ A +LDGG E +RA Sbjct: 1074 ESLLGAAFLDGGYEKLEACAKIVLPERA 1101 >gi|219852808|ref|YP_002467240.1| ribonuclease III [Methanosphaerula palustris E1-9c] gi|219547067|gb|ACL17517.1| ribonuclease III [Methanosphaerula palustris E1-9c] Length = 160 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 7/151 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYER----LEFLGDRILGLLISTLLF 60 + LE+RI Y F +++ ++ALT + + +R L LGD ++ LL+ L Sbjct: 6 QIEELERRIKYRFIDQAHPQRALTRLAFAGEQHFEDDRDMDALATLGDAVIDLLVIDDLL 65 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + K GE++V V+ +A LDLA + + A+ E Sbjct: 66 RTGVTRK-GEITVLKVRRVNMSVLRSIAESLDLAPLVFWGKGEETQQVWLSGRVLAECCE 124 Query: 121 SLIAALYLDGGIEVAGTFV--DKYWKQRALK 149 ++I A++LDGG+ + + +R ++ Sbjct: 125 AVIGAVFLDGGLRAVRQVLVTLELISEREVE 155 >gi|302502160|ref|XP_003013071.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371] gi|291176633|gb|EFE32431.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371] Length = 1490 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 103/283 (36%), Gaps = 73/283 (25%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S +E I Y+F ++LL +L+H S + +Y+RLEFLGD IL +++ LF Sbjct: 1208 LSKIEPLIDYSFTKKALLAASLSHPS-NPISGMTYQRLEFLGDSILDNIVTRALFRCKKE 1266 Query: 66 AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99 ++ + +LV+A+ + + R++ L ++ Sbjct: 1267 IPHQDMHLIRTALVNADFLAFLCMNTSTDETREDVCVSPTGEVEVTSSTRQVSLWQYMSH 1326 Query: 100 SS----------------------DLRKDVCSF---------MTSIQADVVESLIAALYL 128 SS + + + +D++ES++ A+++ Sbjct: 1327 SSTDIVETQQAMARTFEELRDQIENALRSGARYPWTLLSTLNAPKFFSDIIESILGAIFI 1386 Query: 129 D--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 D G I F+ + Y ++ G K L A + ++ +Y V+ Sbjct: 1387 DSRGSILACQKFLTRIGLMDYLQRVLEDDGIDFMHPKQRLGVVAQS---LSVQYVVSEVH 1443 Query: 182 GPDHDPRFTVVVEISGLAPAQ---GMDCSKRAAEQVAAAEVLK 221 ++ V + ++ G+ S+ A AA L+ Sbjct: 1444 VKPGVTQWKCQVLVGDEEISRVDDGV--SQNQARAKAADLALE 1484 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 57/149 (38%), Gaps = 22/149 (14%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F N L+ A+T +S +Y+RLEFLGD L L S L EG LS + + Sbjct: 1033 FQNIQLVLTAITATSAREDT--NYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKD 1090 Query: 77 SLVSAETCSQVARELDLASFIRV--------------------SSDLRKDVCSFMTSIQA 116 S+VS + A + L FI K T A Sbjct: 1091 SIVSNSRLWKAAVDTGLDQFILTTCFTGAKWRPLYNSTYTDNAGKIGEKSTRKLSTKTLA 1150 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 DVVESLI +DGG ++ + + Sbjct: 1151 DVVESLIGVAIIDGGENKVLRCLELFLPE 1179 >gi|328871085|gb|EGG19456.1| hypothetical protein DFA_00033 [Dictyostelium fasciculatum] Length = 1106 Score = 93.2 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 23/154 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSIS----------------HSYQESYERLEFLGDRIL 51 +K + N LL + TH S + +RLEFLGD +L Sbjct: 689 EFQKSF-VSIKNDLLLRQVFTHPSTKMINSLVPQSYNIFRDYLPFDGDNQRLEFLGDSVL 747 Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 + L+ + +EG+L+ + + + S ++ +R V M Sbjct: 748 KFCTTYYLYFKYPQLREGQLTSKRSEITSNSYLLSKCERWNVVDLLRF------TVTEDM 801 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 +ADV+E++ AL+++ G++ A F+ + Q Sbjct: 802 KKPKADVMEAIFGALFIERGVKEAYQFIVQNIFQ 835 Score = 92.4 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 10/131 (7%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 + L ++++T +SYERLEFLGD L L+IS L++ F +EG LS Sbjct: 866 LRINIKKTCLFQQSMT----CSGDLDSYERLEFLGDAFLDLVISKHLYDQFPDKQEGFLS 921 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV E +Q++++++L S + F D++E+ I L LD G+ Sbjct: 922 TARAGLVKNEALAQISQKINL------SLAISDPHIHFTVKRLGDLLEAFIGCLLLDCGM 975 Query: 133 EVAGTFVDKYW 143 E F+ + Sbjct: 976 EKTKYFIHTQF 986 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 4/72 (5%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRS-GPDHDPRFT--VVVEISGLAP-AQGMDCSKRAA 211 + K LQE P Y ++ GP++ FT V G +G +K+ A Sbjct: 4 NYKGLLQEICQKHREGVPNYTECHQAPGPNNSNIFTSQVHCLFRGTDLSGEGKGKTKKDA 63 Query: 212 EQVAAAEVLKRE 223 E+ +A V+ + Sbjct: 64 EKASALSVIHQL 75 >gi|302661784|ref|XP_003022555.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517] gi|291186507|gb|EFE41937.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517] Length = 1468 Score = 92.8 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 103/283 (36%), Gaps = 73/283 (25%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S +E I Y+F ++LL +L+H S + +Y+RLEFLGD IL +++ LF Sbjct: 1186 LSKIEPLIDYSFTKKALLAASLSHPS-NPISGMTYQRLEFLGDSILDNIVTRALFRCKRE 1244 Query: 66 AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99 ++ + +LV+A+ + + R++ L ++ Sbjct: 1245 IPHQDMHLIRTALVNADFLAFLCMNTSTDETREDVCVSPTGEVEVTSSTRQVSLWQYMSH 1304 Query: 100 SS----------------------DLRKDVCSF---------MTSIQADVVESLIAALYL 128 SS + + + +D++ES++ A+++ Sbjct: 1305 SSTDIVETQQAMARTFEELRDQIENALRSGARYPWTLLSTLNAPKFFSDIIESILGAIFI 1364 Query: 129 D--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 D G I F+ + Y ++ G K L A + ++ +Y V+ Sbjct: 1365 DSRGSILACQKFLTRIGLMDYLQRVLEDDGIDFMHPKQRLGVVAQS---LSVQYVVSEVH 1421 Query: 182 GPDHDPRFTVVVEISGLAPAQ---GMDCSKRAAEQVAAAEVLK 221 ++ V + ++ G+ S+ A AA L+ Sbjct: 1422 VKPGVTQWKCQVLVGDEEISRVDDGV--SQNQARAKAADLALE 1462 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 57/149 (38%), Gaps = 22/149 (14%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F N L+ A+T +S +Y+RLEFLGD L L S L EG LS + + Sbjct: 1011 FQNIQLVLTAITATSAREDT--NYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKD 1068 Query: 77 SLVSAETCSQVARELDLASFIRV--------------------SSDLRKDVCSFMTSIQA 116 S+VS + A + L FI K T A Sbjct: 1069 SIVSNSRLWKAAVDTGLDQFILTTCFTGAKWRPLYNSTYTNNAGKIGEKSTRKLSTKTLA 1128 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 DVVESLI +DGG ++ + + Sbjct: 1129 DVVESLIGVAIIDGGENKVLRCLELFLPE 1157 >gi|169612533|ref|XP_001799684.1| hypothetical protein SNOG_09389 [Phaeosphaeria nodorum SN15] gi|111062461|gb|EAT83581.1| hypothetical protein SNOG_09389 [Phaeosphaeria nodorum SN15] Length = 474 Score = 92.8 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 38/229 (16%) Query: 23 LEKA-LTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 L++A TH SI + YERLE+LGD + L+ S L+N F +L Sbjct: 162 LQEAVFTHRSIHANNVNVHQHVDFGLDYERLEYLGDAYIELIASRALYNRFPHVDVPQLC 221 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---D 129 LV ++ + ++ + K+ ++ + AD+ E+ +A + L + Sbjct: 222 SWRERLVENVALAKFSEAYGFPDQLKRKVEFDKNSKAWR-KVVADIFEAYVAGVVLSDPE 280 Query: 130 GGIEVAGTFVDKYW-------KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK----VT 178 G A ++D+ W +++ +++ + R D LQ+ YK + Sbjct: 281 NGFATAEKWLDELWASQLLNFQEKVVENARARDD----LQKLLVVNGIQL-NYKEEKPMI 335 Query: 179 FRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G ++ + V + G K A AA + +KR Sbjct: 336 MEQG---VQKYYLGVYLTGWGYEDEWLGSGDGQKKAQACISAATDAIKR 381 >gi|158706444|sp|Q1DW80|DCL2_COCIM RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease DCL2; Includes: RecName: Full=ATP-dependent helicase DCL2 Length = 1478 Score = 92.4 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 90/261 (34%), Gaps = 69/261 (26%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S +E +GY F + LL A+TH S S SY+RLEF+GD IL +++ LF Sbjct: 1184 LSEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFESPRC 1242 Query: 66 AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99 ++ + +LV+A+ + + R L F++ Sbjct: 1243 FHHFDMHLMRTALVNADFLAFLCMNAYREEDRGEAVENSKRRVTVAMTKRRAYLWGFMKH 1302 Query: 100 SSD------------------LRKDVCSFMTSIQ--------------ADVVESLIAALY 127 S+ D + +D+VES++ A++ Sbjct: 1303 SASWDIVNAQQRAAKQYEKLHEEIDEKLRSSKTYPWTLLCRLDAAKFFSDIVESILGAIF 1362 Query: 128 LD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +D G + F+++ + +R L K L A ++ +Y+ Sbjct: 1363 IDSQGSMPACRIFLERIGLIPYLKRVLSEDLDLMHPKERLGLLA---GTLSVKYETKRTQ 1419 Query: 182 GPDHDPRFTVVVEISGLAPAQ 202 G + R+ + + Sbjct: 1420 GVE-PQRWECAARVGDEEVVR 1439 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 20/147 (13%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F+N SL+ A+ SS + +Y+RLEFLGD +L L S L EG L++R Sbjct: 1012 FSNLSLVLTAI--SSSAAREASNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKG 1069 Query: 77 SLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFM-TSIQADV 118 ++VS + A + L FI +++ + M T + ADV Sbjct: 1070 NIVSNGYLANAALQTGLDKFILTKPFTGAKWRPSYNTDHINTGDMTEPTREMSTKVLADV 1129 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQ 145 VE+LI A +DGG + + Sbjct: 1130 VEALIGAANIDGGENKILNCLKIFIPD 1156 >gi|119190771|ref|XP_001245992.1| hypothetical protein CIMG_05433 [Coccidioides immitis RS] Length = 1435 Score = 92.4 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 90/261 (34%), Gaps = 69/261 (26%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S +E +GY F + LL A+TH S S SY+RLEF+GD IL +++ LF Sbjct: 1141 LSEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFESPRC 1199 Query: 66 AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99 ++ + +LV+A+ + + R L F++ Sbjct: 1200 FHHFDMHLMRTALVNADFLAFLCMNAYREEDRGEAVENSKRRVTVAMTKRRAYLWGFMKH 1259 Query: 100 SSD------------------LRKDVCSFMTSIQ--------------ADVVESLIAALY 127 S+ D + +D+VES++ A++ Sbjct: 1260 SASWDIVNAQQRAAKQYEKLHEEIDEKLRSSKTYPWTLLCRLDAAKFFSDIVESILGAIF 1319 Query: 128 LD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +D G + F+++ + +R L K L A ++ +Y+ Sbjct: 1320 IDSQGSMPACRIFLERIGLIPYLKRVLSEDLDLMHPKERLGLLA---GTLSVKYETKRTQ 1376 Query: 182 GPDHDPRFTVVVEISGLAPAQ 202 G + R+ + + Sbjct: 1377 GVE-PQRWECAARVGDEEVVR 1396 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 20/147 (13%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F+N SL+ A+ SS + +Y+RLEFLGD +L L S L EG L++R Sbjct: 969 FSNLSLVLTAI--SSSAAREASNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKG 1026 Query: 77 SLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFM-TSIQADV 118 ++VS + A + L FI +++ + M T + ADV Sbjct: 1027 NIVSNGYLANAALQTGLDKFILTKPFTGAKWRPSYNTDHINTGDMTEPTREMSTKVLADV 1086 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQ 145 VE+LI A +DGG + + Sbjct: 1087 VEALIGAANIDGGENKILNCLKIFIPD 1113 >gi|320035561|gb|EFW17502.1| RNA helicase/RNAse III [Coccidioides posadasii str. Silveira] Length = 1448 Score = 92.4 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 90/261 (34%), Gaps = 69/261 (26%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S +E +GY F + LL A+TH S S SY+RLEF+GD IL +++ LF Sbjct: 1141 LSEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFESPRG 1199 Query: 66 AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99 ++ + +LV+A+ + + R L F++ Sbjct: 1200 FHHFDMHLMRTALVNADFLAFLCMNAYREEDRGEAVENSKTRVTVAMTKRRAYLWGFMKH 1259 Query: 100 SSD------------------LRKDVCSFMTSIQ--------------ADVVESLIAALY 127 S+ D + +D+VES++ A++ Sbjct: 1260 SASWDIVNAQQRAAKQYEKLHEEIDEKLRSSKTYPWTLLCRLDAAKFFSDIVESILGAIF 1319 Query: 128 LD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +D G + F+++ + +R L K L A ++ +Y+ Sbjct: 1320 IDSQGSMPACRIFLERIGLIPYLKRVLSEDLDLMHPKERLGLLA---GTLSVKYETKRTQ 1376 Query: 182 GPDHDPRFTVVVEISGLAPAQ 202 G + R+ + + Sbjct: 1377 GVE-PQRWECAARVGDEEVVR 1396 Score = 85.5 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 20/147 (13%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F+N SL+ A+ SS + +Y+RLEFLGD +L L S L EG L++R Sbjct: 969 FSNLSLVLTAI--SSSAAREASNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKG 1026 Query: 77 SLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFM-TSIQADV 118 ++VS + A + L FI +++ + M T + ADV Sbjct: 1027 NVVSNGYLANAALQTGLDKFILTKPFTGAKWRPSYNTDHINTGNMTEPTREMSTKVLADV 1086 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQ 145 VE+LI A +DGG + + Sbjct: 1087 VEALIGAANIDGGENKILNCLKIFIPD 1113 >gi|51870138|ref|YP_073691.1| hypothetical protein LDVICp186 [Lymphocystis disease virus - isolate China] gi|51858346|gb|AAU11030.1| hypothetical protein [Lymphocystis disease virus - isolate China] Length = 251 Score = 92.4 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 31/215 (14%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSVRFNSL 78 L +A T S+ S +YE LE LGD + + + F + + ++ + Sbjct: 31 LTQAFTPPSVDPSI--NYESLEILGDGVAAYFLPMYFYKSFPQLQNPKGVKAIARLKINY 88 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD--------- 129 S + S +A+ L +I+ +L+ + + DV E+ + ++ L Sbjct: 89 ASRRSFSSIAKFLGFWPYIKKPKNLKIN----QKKLLEDVFEAFLGSVCLILDNHFNVEG 144 Query: 130 GGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKF--GVTPEYKVTFRSGPDHD 186 G V F+ + ++ K D KT L+E P+Y SG + Sbjct: 145 IGTAVCYNFLKSVFDGMTIEINYKALFDPKTRLKELTDKHKTELGLPDYT---HSG---N 198 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + G A +++ EQ + ++L+ Sbjct: 199 KT---ECYVGGELLAVVYGSNQKDREQEGSEKILE 230 >gi|195996287|ref|XP_002108012.1| hypothetical protein TRIADDRAFT_52058 [Trichoplax adhaerens] gi|190588788|gb|EDV28810.1| hypothetical protein TRIADDRAFT_52058 [Trichoplax adhaerens] Length = 915 Score = 92.1 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 94/267 (35%), Gaps = 66/267 (24%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S + + Y F N L A THSS++ E+Y+RLE+LGD IL L+ ++ Sbjct: 652 SCILRNTDYQFNNFYWLRIAFTHSSVA---SENYQRLEYLGDAILEYLLIEFVYCRKPYF 708 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFM----------- 111 G++S + + +T S +A + IR S D+ + +F Sbjct: 709 GPGKISHFKSVMTRNQTFSLIAIAFQFYTHIRCHSKLKLDIMDSIQNFKEILLDNHQDDH 768 Query: 112 -----------------------TSIQADVVESLIAALYLDGG------IEVAGTFVDKY 142 + ADV E+ IAA+YLD G +V V + Sbjct: 769 QPDIGHFANLAYQLYTSNRYQKLPKVCADVFEAFIAAIYLDCGKKLRTVWKVVYKMVQRI 828 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEIS---- 196 G T H F Y+V RS H F + Sbjct: 829 LADILNDVGGLTS---T-----IHDMFPNRIRYQVIKRSNSSKKHRRMF-----LDHPKL 875 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G+ ++G+ S +A+ A +L Sbjct: 876 GMLTSEGIGTSNTSAKDDAIRNMLSHL 902 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 39/173 (22%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 S+L +ALT S+S ++ERLE LGD L + + F + KEG +S+ VS Sbjct: 469 SMLLQALT--SLSADDFFNHERLEILGDSYLKFITTADYFFRNPNMKEGAMSLMRAINVS 526 Query: 81 AETCSQVARELDLASFI-----------------------RVSSDLRKDVCSFMTS---- 113 S+ ++ L + V++++ D S Sbjct: 527 NSHLSRTSKLKGLTLYQFNTPFKLKQWLPPGFTCIRNNANLVANNMLTDGSKQRDSESFK 586 Query: 114 ------IQADVVESLIAALYLDGG-IEVAGTFVDKYWKQRALKSGKFRRDAKT 159 +D VE L+ L G ++ A + + + +D K+ Sbjct: 587 QVMSVKNISDTVEGLVGVYSLASGPVDAAR--LLPWIGLDIDPNVLIEKD-KS 636 >gi|331236920|ref|XP_003331118.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309310108|gb|EFP86699.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1410 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 60/261 (22%), Positives = 93/261 (35%), Gaps = 68/261 (26%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 L+ LE++IGY F + LLE E+LGD ++ + I + F Sbjct: 1110 LKCQALEEKIGYVFKEK-LLE-------------------EWLGDAVVDMWIVQHAYKRF 1149 Query: 64 DSAKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSSD-------------------- 102 D+A EL++ LVS + +A ++L L I S+ Sbjct: 1150 DNATAEELTLARAKLVSNGSLGFLAIKKLGLHKMIMHKSESFEQACVEAIKAIEPFTSIE 1209 Query: 103 ------LRKDVCSFMTSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQ------RAL 148 V I DV+E+++ A+++D + +DK ++ R + Sbjct: 1210 EFFSNLENLFVVFDPPKILNDVLEAIVGAVFIDSRFDLPTVYRTIDKIFEDVTPGLSRIV 1269 Query: 149 KSGKFRRDAKTEL----QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV---EISGLAPA 201 T L Q V+ K G D DP +V V E+ G A Sbjct: 1270 ARDPLS----TMLRLRDQYQCAELRRVSTTIKEPNPEGEDKDPI-SVKVCRIELHGQEIA 1324 Query: 202 QGM-DCSKRAAEQVAAAEVLK 221 G S AEQ A+ LK Sbjct: 1325 SGRHASSASVAEQRASLAALK 1345 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 31/155 (20%) Query: 2 SALRYSTLEKRIGYAFANRSLL---EKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 +++ + L R+ + +LL +ALT + Y+ LE +GD L L S Sbjct: 922 DSIQATALFMRLDFP---MTLLPRGIQALTPPGVG--VPWDYQTLETVGDAFLKLATSVH 976 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT------ 112 ++ EG++S + V + + A + +L S I R F Sbjct: 977 VYLSHLRKGEGDMSHVRSKSVDNDYLRRKAIQANLPSSIL---GQRFRTDRFRDAQTEDG 1033 Query: 113 --------------SIQADVVESLIAALYLDGGIE 133 + +DVVE+L+ A +L GGIE Sbjct: 1034 KELPNGNFSRNVPRRVLSDVVEALLGAGFLTGGIE 1068 >gi|302412697|ref|XP_003004181.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] gi|261356757|gb|EEY19185.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] Length = 1240 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 55/295 (18%), Positives = 96/295 (32%), Gaps = 92/295 (31%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFD-SA 66 LE+ I Y F + LL +++TH+S + + ERLEFLGD IL ++ + L F + Sbjct: 937 LEELIDYTFTKKILLIESITHASFTAGHVNGCLERLEFLGDAILDDIVVSHL---FPLNL 993 Query: 67 KEGELSVRFNSLVSAETCSQVA-------------------------------------- 88 + + + V+ + +A Sbjct: 994 SHDRMHLLKTASVNGDLLGFLALESHAEEDEVIIDVNFSPSDTDLNPQNPAGMEQKLKRT 1053 Query: 89 -RELDLASFIRVSSDL-----RKDVCSFMT--------------------------SIQA 116 R++ L F+R SS K + + Sbjct: 1054 RRKIPLWKFMRHSSIEVVQQQTKAAGAHADLRGQIIHALGHGSSYPWSLLARLHPAKFLS 1113 Query: 117 DVVESLIAALYLDGG-IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGV 171 D+VE+++ A+++D G + ++ R K K+EL E A + Sbjct: 1114 DMVEAVLGAVWVDSGDMRACVRVTERLGILPVLSRLAKDDVHVLHPKSELGEIASHR--- 1170 Query: 172 TPEYKVTFRSGPDH----DPRFTVVVEISGLAPAQ---GMDCSKRAAEQVAAAEV 219 T +Y +T ++ V I A+ G+ AE AA Sbjct: 1171 TVKYLLTLPEDAAGLQSAKRKYACKVMIGDRCVAEVDDGVARD--EAETKAAEIA 1223 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 35/157 (22%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S+L + + F++ SL+ A+ S+ +YERLEFLGD IL L + Sbjct: 768 SSLLRDLN--FSDPSLVLTAI--STKGSLEATNYERLEFLGDSILKLCTTVNAAALH--- 820 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCS 109 LVS + A + L F+ + + R Sbjct: 821 ----------GLVSNSRLCRAALDAGLDKFVLTENFTCRTWRPIYVNGMLETGARDSGPR 870 Query: 110 F-MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 T ADVVE+LI A Y+DGG+ A + + ++ Sbjct: 871 EISTKTLADVVEALIGAAYIDGGLAKAIGCISIFLRE 907 >gi|331250704|ref|XP_003337958.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309316948|gb|EFP93539.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1411 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 60/261 (22%), Positives = 93/261 (35%), Gaps = 68/261 (26%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 L+ LE++IGY F + LLE E+LGD ++ + I + F Sbjct: 1089 LKCQALEEKIGYVFKEK-LLE-------------------EWLGDAVVDMWIVQHAYKRF 1128 Query: 64 DSAKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSSD-------------------- 102 D+A EL++ LVS + +A ++L L I S+ Sbjct: 1129 DNATAEELTLARAKLVSNGSLGFLAIKKLGLHKVIMHKSESFEQACVEAIKAIEPFTSIE 1188 Query: 103 ------LRKDVCSFMTSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQ------RAL 148 V I DV+E+++ A+++D + +DK ++ R + Sbjct: 1189 EFFSNLENLFVVFDPPKILNDVLEAIVGAVFIDSRFDLPTVYRTIDKIFEDVTPGLSRIV 1248 Query: 149 KSGKFRRDAKTEL----QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV---EISGLAPA 201 T L Q V+ K G D DP +V V E+ G A Sbjct: 1249 ARDPLS----TMLRLRDQYQCAELRRVSTTIKEPNPEGEDKDPI-SVRVCRIELHGQEIA 1303 Query: 202 QGM-DCSKRAAEQVAAAEVLK 221 G S AEQ A+ LK Sbjct: 1304 SGRHASSASVAEQRASLAALK 1324 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 31/155 (20%) Query: 2 SALRYSTLEKRIGYAFANRSLL---EKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 +++ + L R+ + +LL +ALT + Y+ LE +GD L L S Sbjct: 901 DSIQATALFMRLDFP---MTLLPRGIQALTPPGVG--VPWDYQTLETVGDAFLKLATSVH 955 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT------ 112 ++ EG++S + V + + A + +L S I R F Sbjct: 956 VYLSHLRKGEGDMSHVRSKSVDNDYLRRKAIQANLPSSIL---GQRFRTDRFRDAQTEDG 1012 Query: 113 --------------SIQADVVESLIAALYLDGGIE 133 + +DVVE+L+ A +L GGIE Sbjct: 1013 KELPNGNFSRNVPRRVLSDVVEALLGAGFLTGGIE 1047 >gi|325185579|emb|CCA20062.1| Dicerlike 1 (DCL1) putative [Albugo laibachii Nc14] Length = 1609 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 52/192 (27%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH-----------SYQESYERLEFLGDRILGLLIST 57 LE+R+ Y F N+ LL +A+TH S+ S+Q +YERLE+LGD ++ L + Sbjct: 1383 LEQRLCYRFRNKLLLLEAITHPSVRRLEIVMDNEKRVSWQGNYERLEYLGDALIEYLTVS 1442 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSS--------------- 101 F D+ G LS + VS + + A + I + Sbjct: 1443 YAFLAHDTWLPGSLSNWKAATVSNDALGKTAIACFGVDEAICLGHVQFDREIMNKIKTIP 1502 Query: 102 -------------------DLRKDVCSFM----TSIQADVVESLIAALYLDGGIEVAGTF 138 K C+ I ADV+E+L+AA++LD G ++ Sbjct: 1503 RKYAVDYNVDTIQPGHSRNSTTKSNCTTNLLALPKILADVMEALVAAVFLDSGKDL--GI 1560 Query: 139 VDKYWKQRALKS 150 + + R L + Sbjct: 1561 IRDVFLGRLLDT 1572 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 25/154 (16%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + STL + IG + +LL A + + +YER E LGD L L S ++ Sbjct: 1185 KAQVSTLMRHIGLEL-DMNLLGNA--------TSKPAYERCEVLGDTFLKLETSWYMYQM 1235 Query: 63 FDSAK-EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD---------VCSFMT 112 EG LS+ ++ + Q + +L +I ++L + + Sbjct: 1236 RRDIPDEGTLSMLRRDIIRNDRLCQFSLLKELHHYIVYPAELEQHPFSCWKPSCMGKTPQ 1295 Query: 113 SI------QADVVESLIAALYLDGGIEVAGTFVD 140 SI ADV+E++ A + G + A F++ Sbjct: 1296 SINAPSKWIADVLEAICGAYIIGHGEKGARYFLN 1329 >gi|255934909|ref|XP_002558481.1| Pc13g00300 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583101|emb|CAP91099.1| Pc13g00300 [Penicillium chrysogenum Wisconsin 54-1255] Length = 144 Score = 91.7 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 8/144 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +SA +E + Y F ++SLL+KA + + ++R +GD L L+++ L + Sbjct: 5 LSAESIRAIESILNYEFHDKSLLDKAFEAPGAT-EARGGHQRQALIGDAALKLVLTELGY 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +A GE+++ S VS E ++ L L ++ R++ + V S+ A +E Sbjct: 64 E--GNASTGEITISRGSRVSNENLKRLGESLGLNAYFRLNPASQGVVPR---SMMATTME 118 Query: 121 SLIAALYLDGGIEVA--GTFVDKY 142 ++I A+YLD G ++A V++ Sbjct: 119 AIIGAVYLDSGKDMATTRALVNRL 142 >gi|330928085|ref|XP_003302123.1| hypothetical protein PTT_13822 [Pyrenophora teres f. teres 0-1] gi|311322704|gb|EFQ89784.1| hypothetical protein PTT_13822 [Pyrenophora teres f. teres 0-1] Length = 441 Score = 91.7 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 75/210 (35%), Gaps = 25/210 (11%) Query: 23 LEKA-LTHSSI-----------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 L +A TH S YERLE LGD + L+ S L+N F E Sbjct: 134 LHEAVFTHRSAIFDPSIPGSTLGQDLSLDYERLELLGDAYIELIASRALYNRFPHVDVPE 193 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL-- 128 L + LV T + + ++ + K + + AD+VE+ +AA+ L Sbjct: 194 LCMWRERLVENSTLGRFSHAYGFPDRLKHRAMWDKTSKQY-QKVVADIVEAYVAAIVLSD 252 Query: 129 -DGGIEVAGTFVDKYWKQRALK-SGKFRRDA--KTELQEWAHAKFGVTPEYKVTFRSGPD 184 D G E A ++ + W + L K + + EL K + S + Sbjct: 253 PDNGFEAAEAWLTELWAPQLLGFREKIIENPQARNELNRLVLGKDVKLITKEEKPMSYDE 312 Query: 185 HD-PRFTVVVEI-----SGLAPAQGMDCSK 208 + + + + + + G +K Sbjct: 313 NSIQCYHIGIYLTGWGYNDEWLGSGHGQNK 342 >gi|258615164|ref|ZP_05712934.1| ribonuclease III [Enterococcus faecium DO] Length = 93 Score = 91.3 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 1/80 (1%) Query: 132 IEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 + F++K + D KT+LQE V+ EY++ GP H+ F Sbjct: 1 FDTTHAFIEKVIFPKVKAGAFSHEMDHKTKLQEVLQKSGDVSIEYRLINEEGPAHERVFW 60 Query: 191 VVVEISGLAPAQGMDCSKRA 210 + V + G SK+ Sbjct: 61 IEVYVDDQLIGTGQGKSKKL 80 >gi|327303976|ref|XP_003236680.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892] gi|326462022|gb|EGD87475.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892] Length = 1460 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 103/283 (36%), Gaps = 73/283 (25%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S +E I Y+F ++LL +L+H S + +Y+RLEFLGD IL +++ LF Sbjct: 1178 LSKVEPLIEYSFTKKALLAASLSHPS-NPISGMTYQRLEFLGDSILDNIVTRALFRCKKE 1236 Query: 66 AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99 ++ + +LV+A+ + + R++ L ++ Sbjct: 1237 IPHQDMHLIRTALVNADFLAFLCMNTSTDETREDVCVSPTGEVEVTSSTRQVSLWQYMSH 1296 Query: 100 SS----------------------DLRKDVCSF---------MTSIQADVVESLIAALYL 128 SS + + + +D++ES++ A+++ Sbjct: 1297 SSTDIVETQQAMARTFEELRGQIENALRSGARYPWTLLSTLNAPKFFSDIIESILGAIFI 1356 Query: 129 D--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 D G I F+ + Y ++ G K L A + ++ +Y V+ Sbjct: 1357 DSRGSILACQKFLTRIGLMDYLQRVLEDDGIDFMHPKQRLGVVAQS---LSVQYVVSEVH 1413 Query: 182 GPDHDPRFTVVVEISGLAPAQ---GMDCSKRAAEQVAAAEVLK 221 ++ V + ++ G+ S+ A AA L+ Sbjct: 1414 VKPGVTQWKCQVLVGDEEISRVDDGV--SQNQARAKAADLALE 1454 Score = 87.4 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 58/149 (38%), Gaps = 22/149 (14%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F N L+ A+T +S +Y+RLEFLGD L L S L EG LS + + Sbjct: 1003 FQNIQLVLTAITAASAREDI--NYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKD 1060 Query: 77 SLVSAETCSQVARELDLASFIRV--------------------SSDLRKDVCSFMTSIQA 116 S+VS + A + L FI K T A Sbjct: 1061 SIVSNSRLWKAAVDTGLDQFILTTCFTGAKWRPLYNSTYTNNAGKIGEKSTRELSTKTLA 1120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 DVVESLI A +DGG ++ + + Sbjct: 1121 DVVESLIGAAIIDGGENKVLHCLELFLPE 1149 >gi|309386042|gb|ADO66939.1| ribonuclease III [Enterococcus faecium] Length = 85 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 1/84 (1%) Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 S+ A+E ++ + ++ D+ E+ + ALYLD G + F++K Sbjct: 2 SKFAKECHFDQYVLLGKGEENSGGRTRPALLCDLFEAFLGALYLDQGFDTTHAFIEKVIF 61 Query: 145 QRALKSG-KFRRDAKTELQEWAHA 167 + D KT+LQE Sbjct: 62 PKVKAGAFSHEMDHKTKLQEVLQK 85 >gi|327198659|emb|CCA61360.1| unnamed protein product [Diadromus pulchellus ascovirus 4a] Length = 257 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 79/220 (35%), Gaps = 20/220 (9%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE----GELSV 73 N + A T + + + +YE E LGD + I + + F + L+ Sbjct: 24 NNSKIFAAAFT--TADYDPKFNYEFFEQLGDLTINKFIVSYMSRRFPQLRNRNGVNVLAT 81 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL------- 126 S S ++ + L +R++ + D M S+ DV E+L A+ Sbjct: 82 LRILYGSKNVLSGLSSKYGLDKLVRMTREESLDKTKSM-SVFEDVFEALFGAIEFVFDRD 140 Query: 127 -YLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G + + +K + DAKT L E A+ + Y+ S + Sbjct: 141 NFPGMGYVFCYRILTAMFDDLDVKIDYESLVDAKTRLNE-LKAEHKFSLTYR---DSRDE 196 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F I G+A G +K+ A+ A+ + G Sbjct: 197 ASGMFRSTAVIDGIAAGSGESNTKKGAQIEASQRAIDWLG 236 >gi|321460750|gb|EFX71789.1| hypothetical protein DAPPUDRAFT_326825 [Daphnia pulex] Length = 204 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 7/145 (4%) Query: 9 LEKRIGYAFANRSLLEKALTH--SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LEK +GY F N+ L+ ALTH S+ + + +R E LGD+ LG LI + + + Sbjct: 38 LEKILGYEFQNKDNLKLALTHTISNPTKCPSKDSDRSESLGDKFLGALIMVNCYKTYPTY 97 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 GEL+ + + +T + +A + + I R + + AD+ E++ A++ Sbjct: 98 GAGELANLTSMITCNDTFAVLAVPALIPTTI---PGERISIEIDYPKVYADLFEAVAASI 154 Query: 127 YLDGG--IEVAGTFVDKYWKQRALK 149 Y+D ++ Sbjct: 155 YVDCNEDFNTFRRVFFAIMRETIDN 179 >gi|156369805|ref|XP_001628164.1| predicted protein [Nematostella vectensis] gi|156215134|gb|EDO36101.1| predicted protein [Nematostella vectensis] Length = 474 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 80/223 (35%), Gaps = 20/223 (8%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLE------FLGDRILGLLISTLLFN 61 R+ F + LL ALTH + E++E LG + I+ L Sbjct: 90 AFRNRLSLVFEDERLLRAALTHELCEEDLVKDKEKIEENSKLALLGHNLTSQYITEYLCF 149 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL-----RKDVCSFMTSIQA 116 + + + N L + ET +VA L IR DL K V + + Sbjct: 150 KYPNLPSEGVRQLHNFLTNRETLVKVADLTALPELIRTKHDLDSLKKEKHVEVTKEDVIS 209 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRA----LKSGKFRRDAKTELQEWAHAKFGVT 172 D +LI A+YLD G A FV + + L + + L+ ++ Sbjct: 210 DAFLALIGAIYLDQGSSEANKFVRDFLITQLYTQELNQVLQFENPEALLESMVLSEGHTK 269 Query: 173 PEYKVTFRSGPD-HDPRFTVVVEISGLAPAQGMDCS----KRA 210 PE ++T +SG H P + V + + + KR Sbjct: 270 PEARITRQSGKATHLPVYVVGLFCGEELIGEAAGYNLVNAKRE 312 >gi|66822085|ref|XP_644397.1| hypothetical protein DDB_G0274077 [Dictyostelium discoideum AX4] gi|66823323|ref|XP_645016.1| hypothetical protein DDB_G0273051 [Dictyostelium discoideum AX4] gi|50057720|emb|CAC41976.2| putative RNaseIII [Dictyostelium discoideum] gi|60472520|gb|EAL70472.1| hypothetical protein DDB_G0274077 [Dictyostelium discoideum AX4] gi|60473215|gb|EAL71163.1| hypothetical protein DDB_G0273051 [Dictyostelium discoideum AX4] Length = 1203 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 22/144 (15%) Query: 18 ANRSLLEKALTHSSIS----------------HSYQESYERLEFLGDRILGLLISTLLFN 61 N +L + LTH S + + Y+RLEFLGD +L + S LF Sbjct: 887 TNNQVLREVLTHPSTKVISERKPIEKDQFQSYRPFMKDYQRLEFLGDSVLKITSSLYLFK 946 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 FD+ EG LS + E ++++R + +R+ + AD++E+ Sbjct: 947 KFDNEGEGLLSKKREFYTKNEYLTELSRRIGFDYILRI------TTIGDHSKPHADLIEA 1000 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ 145 I A+Y++ G + + ++ K+ Sbjct: 1001 FIGAIYIECGFKDSFDWIIKWIFD 1024 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 4/104 (3%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD +L +++ LF+ + +EG L+ + LV+ E S++ + ++ S Sbjct: 1102 ERLEFLGDAVLDFIVADYLFSKYKEQQEGYLTESKSKLVNNENLSKILK----SNKNIFS 1157 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + F D +ES I YL G E V K + Sbjct: 1158 PSQQDSFKHFSVKRMGDHIESYIGGFYLKFGFEKTKNRVYKLFD 1201 >gi|195996297|ref|XP_002108017.1| hypothetical protein TRIADDRAFT_52064 [Trichoplax adhaerens] gi|190588793|gb|EDV28815.1| hypothetical protein TRIADDRAFT_52064 [Trichoplax adhaerens] Length = 707 Score = 90.1 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 64/180 (35%), Gaps = 41/180 (22%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +++E + Y+F NRSLL ALTH S S SYE+L FLGD +L I L+ + Sbjct: 441 NSVETILNYSFRNRSLLMLALTHKSYSGLESISYEKLAFLGDTLLIYQICLFLYTQYTDY 500 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---------------------- 104 + + + L VA DL F+ S Sbjct: 501 QPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLHKSRELTLQIDEIYQALEADDVQSFSST 560 Query: 105 -KDVCSFMTSI----------------QADVVESLIAALYLDG--GIEVAGTFVDKYWKQ 145 + CS+ D +++AA++LD + AG ++ Sbjct: 561 VQSGCSYKMKTTLLLEKLSIEQFVPKELGDTFAAVVAAVFLDNYPDEDTAGRIINSLLNP 620 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +A+T SS + + ERLEFLGDR L I+ S E+ R L + Sbjct: 269 LLEAITLSSAQDHF--NLERLEFLGDRYLNYKITLTTLLEHPSWSINEVINRMRFLTKNK 326 Query: 83 TCSQVARELDLASFI 97 ++ + +I Sbjct: 327 KLFRLGAGRRIPYYI 341 >gi|303315249|ref|XP_003067632.1| Type III restriction enzyme, res subunit family protein [Coccidioides posadasii C735 delta SOWgp] gi|240107302|gb|EER25487.1| Type III restriction enzyme, res subunit family protein [Coccidioides posadasii C735 delta SOWgp] Length = 1448 Score = 90.1 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 89/261 (34%), Gaps = 69/261 (26%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S +E +GY F + LL A+TH S S SY+RLEF+GD IL +++ LF Sbjct: 1141 LSEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFESPRG 1199 Query: 66 AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99 ++ + +LV+A+ + + R L F++ Sbjct: 1200 FHHFDMHLMRTALVNADFLAFLCMNAYREEDRGEAVENSKRRVTVAMTKRRAYLWGFMKH 1259 Query: 100 SSD------------------LRKDVCSFMTSIQ--------------ADVVESLIAALY 127 S+ D + +D+VES++ A++ Sbjct: 1260 SASWDIVNAQQRAAKQYEKLHEEIDEKLRSSKTYPWTLLCRLDAAKFFSDIVESILGAIF 1319 Query: 128 LD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +D G + F++ + +R L K L A ++ +Y+ Sbjct: 1320 IDSQGSMPACRIFLECIGLIPYLKRVLSEDLDLMHPKERLGLLA---GTLSVKYETKRTQ 1376 Query: 182 GPDHDPRFTVVVEISGLAPAQ 202 G + R+ + + Sbjct: 1377 GVE-PQRWECAARVGDEEVVR 1396 Score = 85.9 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 20/147 (13%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F+N SL+ A+ SS + +Y+RLEFLGD +L L S L EG L++R Sbjct: 969 FSNLSLVLTAI--SSSAAREASNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKG 1026 Query: 77 SLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFM-TSIQADV 118 ++VS + A + L FI +++ + M T + ADV Sbjct: 1027 NVVSNGYLANAALQTGLDKFILTKPFTGAKWRPSYNTDHINTGDMTEPTREMSTKVLADV 1086 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQ 145 VE+LI A +DGG + + Sbjct: 1087 VEALIGAANIDGGENKILNCLKIFIPD 1113 >gi|167046032|gb|ABZ10547.1| dicer-like protein E [Trichoplax adhaerens] Length = 359 Score = 89.7 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 64/180 (35%), Gaps = 41/180 (22%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +++E + Y+F NRSLL ALTH S S SYE+L FLGD +L I L+ + Sbjct: 171 NSVETILNYSFRNRSLLMLALTHKSYSGLESISYEKLAFLGDTLLIYQICLFLYTQYTDY 230 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---------------------- 104 + + + L VA DL F+ S Sbjct: 231 QPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLHKSRELTLQIDEIYQALEADDVQSFSST 290 Query: 105 -KDVCSFMTSI----------------QADVVESLIAALYLDG--GIEVAGTFVDKYWKQ 145 + CS+ D +++AA++LD + AG ++ Sbjct: 291 VQSGCSYKMKTTLLLEKLSIEQFVPKELGDTFAAVVAAVFLDNYPDEDTAGRIINSLLNP 350 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +A+T SS + + ERLEFLGDR L I+ S E+ R L + Sbjct: 1 EAITLSSAQDHF--NLERLEFLGDRYLNYKITLTTLLEHPSWSINEVINRMRFLTKNKKL 58 Query: 85 SQVARELDLASFI 97 ++ + +I Sbjct: 59 FRLGAGRRIPYYI 71 >gi|302693867|ref|XP_003036612.1| hypothetical protein SCHCODRAFT_30567 [Schizophyllum commune H4-8] gi|300110309|gb|EFJ01710.1| hypothetical protein SCHCODRAFT_30567 [Schizophyllum commune H4-8] Length = 216 Score = 89.7 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 59/142 (41%), Gaps = 12/142 (8%) Query: 18 ANRSLLEKALTHSSI-----------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + + + TH S+ + E+ E LGD +LGL+++T + + Sbjct: 9 HDERIENQIFTHRSLFGRPTHVFEDRADDLAPDNEKFEHLGDTVLGLVVTTQIQQMYPGL 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 + G + +V + + ++ + L ++V + ++QAD+ E+ + L Sbjct: 69 RVGPSTKIRALVVGNQNLAAISVKYKLPERLKV-HAAQVVSLKASVNVQADLFEAYVGGL 127 Query: 127 YLDGGIEVAGTFVDKYWKQRAL 148 +L G+ V ++ ++ + Sbjct: 128 FLHRGLSVVEAWLKPLFRPYII 149 >gi|189190408|ref|XP_001931543.1| double-strand-specific ribonuclease Pac1 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973149|gb|EDU40648.1| double-strand-specific ribonuclease Pac1 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 362 Score = 89.7 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 45/210 (21%), Positives = 76/210 (36%), Gaps = 25/210 (11%) Query: 23 LEKA-LTHSSI-----------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 L +A TH S YERLE LGD + L+ S L+N F E Sbjct: 127 LHEAVFTHRSAIFDPSIPGSALGQDLSLDYERLELLGDAYIELIASRALYNRFPHVDVPE 186 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL-- 128 L + LV T + + ++ + K + + AD+VE+ +AA+ L Sbjct: 187 LCMWRERLVENSTLGKFSHAYGFPDRLKHRAMWDKTSKQY-QKVVADIVEAYVAAVVLSD 245 Query: 129 -DGGIEVAGTFVDKYWKQRALK-SGKFRRDA--KTELQEWAHAKFGVTPEYKVTFRSGPD 184 D G E A ++ + W + L K + + EL K + S + Sbjct: 246 PDNGFETAEAWLTELWAPQLLGFREKIIENPQARNELNRLVLGKDVKLITKEEKPMSYDE 305 Query: 185 HD-PRFTVVVEISG-----LAPAQGMDCSK 208 + + + + ++G G +K Sbjct: 306 NSIQCYYIGIYLTGWGYKDEWLGSGHGQNK 335 >gi|167046028|gb|ABZ10545.1| dicer-like protein D [Trichoplax adhaerens] Length = 351 Score = 89.4 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 69/178 (38%), Gaps = 43/178 (24%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S + + Y F N L A THSS++ E+Y+RLE+LGD IL L+ ++ Sbjct: 174 SCILRNTDYQFNNFYWLRIAFTHSSVA---SENYQRLEYLGDAILEYLLIEFVYCRKPYF 230 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFM----------- 111 G++S + + +T S +A + IR S D+ + +F Sbjct: 231 GPGKISHFKSVMTRNQTFSLIAIAFQFYTHIRCHSKLKLDIMDSIQNFKEILLDNHQDDH 290 Query: 112 -----------------------TSIQADVVESLIAALYLDGG--IEVAGTFVDKYWK 144 + ADV E+ IAA+YLD G + V K + Sbjct: 291 QPDIGHFANLAYQLYTSNRYQKLPKVCADVFEAFIAAIYLDCGKKLRTVWKVVYKMVQ 348 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 37/155 (23%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF-- 96 ++ERLE LGD L + + F + KEG +S+ VS S+ ++ L + Sbjct: 7 NHERLEILGDSYLKFITTADYFFRNPNMKEGAMSLMRAINVSNSHLSRTSKLKGLTLYQF 66 Query: 97 ----------------IR-----VSSDLRKDVCSFMTS----------IQADVVESLIAA 125 IR V++++ D S +D VE L+ Sbjct: 67 NTPFKLKQWLPPGFTCIRNNANLVANNMLTDGSKQRDSESFKQVMSVKNISDTVEGLVGV 126 Query: 126 LYLDGG-IEVAGTFVDKYWKQRALKSGKFRRDAKT 159 L G ++ A + + + +D K+ Sbjct: 127 YSLASGPVDAAR--LLPWIGLDIDPNVLIEKD-KS 158 >gi|322694902|gb|EFY86720.1| abhydrolase domain-containing protein [Metarhizium acridum CQMa 102] Length = 333 Score = 89.4 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 89/233 (38%), Gaps = 49/233 (21%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + L H +S + SYERLE+LGD L L+ S+L++ F S G S L Sbjct: 63 DPELEATVFRHPGLSDPLR-SYERLEWLGDAYLELIASSLIYQTFTSTPTGRCSQLREIL 121 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS--------IQADVVESLIAALYL-- 128 + +T +Q RE L S + SDL+ D+ S QAD+ E+ +AA + Sbjct: 122 IRNKTLAQYFREYGLESKAHLPSDLKTDISRSRGSSSDKDIIKTQADMFEAYVAAAIISD 181 Query: 129 -DGGIEVAGTFVDKYW----KQRALKSGKFRR----------------------DAKTEL 161 + G+ +++ W K + L + K R+ AK L Sbjct: 182 PENGMANTASWLKSLWARTIKNQILNNEKNRKLGTQPSSTAQGSTKDMASSSNLSAKERL 241 Query: 162 -QEWAHAKFGVTPEYKVTFRSGPDHD---PRFTVVVEISG-----LAPAQGMD 205 E GV Y+ R G D D P +TV + G G Sbjct: 242 RIEI--GVKGVLIRYEDMPRIGKDRDLGLPLYTVGAYLDGWGERNKLLGTGTA 292 >gi|238576066|ref|XP_002387900.1| hypothetical protein MPER_13150 [Moniliophthora perniciosa FA553] gi|215448751|gb|EEB88830.1| hypothetical protein MPER_13150 [Moniliophthora perniciosa FA553] Length = 298 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 64/182 (35%), Gaps = 42/182 (23%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSI-----------SHSYQESYERLEFLGDR 49 M + L K ++ + + TH S+ + E+ E LGD Sbjct: 1 MHSFELPALPKI-----NSKEIERQIFTHRSVYGRPTHIFEDLPNDPNPDNEKFEHLGDS 55 Query: 50 ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI--------RVSS 101 +L L+++ LL + G + +V+ +T + +++ L + + Sbjct: 56 VLSLVVTDLLLEMCPGLRVGPSTKIRAMIVANQTLATISQRYKLPHRLSVHPAQAEVLKM 115 Query: 102 DLRKDVCSFMTSI------------------QADVVESLIAALYLDGGIEVAGTFVDKYW 143 + SI ADV E+ + LY+D G++ ++++ + Sbjct: 116 SIHASGMCVSISILLFYRLLQTLKTFTCQRHLADVFEAFVGGLYIDQGLQAVQSWLNPLF 175 Query: 144 KQ 145 + Sbjct: 176 RP 177 >gi|33322810|gb|AAQ07140.1|AF496451_1 ribonuclease III [Lactobacillus delbrueckii subsp. lactis] Length = 107 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 3/107 (2%) Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 +S L+ HF EGEL+ +++V E S+VA + ++ K ++ Sbjct: 2 VSDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKKEXKLGVGEEKAGGRKRKAL 61 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKT 159 DV E+ AL+LD GIE F+ + + +G RD KT Sbjct: 62 LEDVFEAFNGALFLDQGIEAVEKFLKQTVYP-LIAAGYFTXARDFKT 107 >gi|322704127|gb|EFY95726.1| abhydrolase domain-containing protein [Metarhizium anisopliae ARSEF 23] Length = 340 Score = 89.0 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 88/232 (37%), Gaps = 47/232 (20%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + L H +S + YERLE+LGD L L+ S+L++ F S G S L Sbjct: 63 DPELEATVFLHPGLSDPLRG-YERLEWLGDAYLELIASSLIYQTFTSTPVGRCSQLREIL 121 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS--------IQADVVESLIAALYL-- 128 + +T +Q RE L S ++ DL+KD+ S QAD+ E+ +AA + Sbjct: 122 IRNKTLAQYFREYGLESKAQLPGDLKKDISRGRGSSSDKDIIKTQADMFEAYVAAAIISD 181 Query: 129 -DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL--Q---------------------EW 164 + G+ +++ W R +K D K +L Q E Sbjct: 182 PENGMANTASWLKSLWA-RTIKDQIVANDRKRKLATQPNSTEQGSTKDMASHSNLSAKEK 240 Query: 165 AHAK---FGVTPEYKVTFRSGPDHD---PRFTVVVEISG-----LAPAQGMD 205 + GV Y+ R G D D P +TV + G G Sbjct: 241 LRIEIGVKGVLVRYEDMPRMGRDRDLGLPLYTVGAYLDGWGERNKLLGTGTA 292 >gi|156032684|ref|XP_001585179.1| hypothetical protein SS1G_13747 [Sclerotinia sclerotiorum 1980] gi|154699150|gb|EDN98888.1| hypothetical protein SS1G_13747 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1867 Score = 89.0 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 78/223 (34%), Gaps = 32/223 (14%) Query: 15 YAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLL---ISTLLFNHFDSAKEG 69 Y F LL A TH + S+ SY+RLEFLGD +L ++ ++ E Sbjct: 1579 YHFKYPRLLRSASTHPAYPFSYEQIPSYQRLEFLGDALLDMVQKMVAEYAC----DINEA 1634 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 + + ++ + ++ A + D+VE+ I A+++D Sbjct: 1635 LIQAKADAKRAGKSEDDYA-----PDYWI--------TVRQPPKCLPDMVEAFIGAIFVD 1681 Query: 130 G--GIEVAGTF----VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS-- 181 E F + Y+K ++ + T L + G ++ R Sbjct: 1682 SEYKFEEVEKFFEMHIRWYFKDMSIYDTYANKHPTTFLTNFLQKNMGCE-DWAPVSREMP 1740 Query: 182 GPDHDPRFTVV-VEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G D V V + + S R A+ AA + L + Sbjct: 1741 GEDGRKNVVVCGVIVHNKVVSTFQAESMRYAKVGAAKKALAQL 1783 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 51/141 (36%), Gaps = 30/141 (21%) Query: 20 RSLLEKALT--------H----SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +A+T H ++ +YERLEFLGD L + S L+ + Sbjct: 1378 PDLALEAVTKDSDNSEEHGEEQTNFQRGMGNNYERLEFLGDCFLKMGTSISLYGLNPDSD 1437 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRV-----------SSDLRKDVCSFMTSIQ- 115 E V L+ + A +L+L FIR +L + + + Sbjct: 1438 EFRYHVDRMCLICNKNLFNTALKLELYRFIRSAAFNRRAWYPEGPELLRGKTATAPNTHK 1497 Query: 116 ------ADVVESLIAALYLDG 130 ADV E++I A L Sbjct: 1498 LGDKSIADVCEAMIGAALLSH 1518 >gi|145523303|ref|XP_001447490.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124415001|emb|CAK80093.1| unnamed protein product [Paramecium tetraurelia] Length = 419 Score = 89.0 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 96/230 (41%), Gaps = 25/230 (10%) Query: 15 YAFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNH-FD 64 + F N ++L +ALT+ YQ + E +G IL S L + Sbjct: 94 FRFQNTNILAQALTNKIHELEYQSKKGTKYPFGNNEEFIVIGQMILEFYFSDYLMQRGYP 153 Query: 65 SAK-----EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 +L + L++ + +++A + ++ +F+++ + + + + A+ + Sbjct: 154 KKDSSIKKPSDLVLLRQRLLNDKNLAEIAIQYNVHNFVQIGN---QTALKKNSKVLAETL 210 Query: 120 ESLIAALYLDGGIEVAG-TFVDKYWKQRALKSG------KFRRDAKTELQEWAHAKFGVT 172 ++++AA Y D G ++ + + + L G + +++ KT E+ + + + Sbjct: 211 KAMVAAQYYDSGFDLEHTREILQSILKELLDKGQNVPIAELKQNPKTSFLEYINNQTDLI 270 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P+ V ++ + + + +E+ +KR EQ+ E LK+ Sbjct: 271 PKVSVEWKKDENSINVYKIQLELDSYINITKTGANKRQTEQLVYQEALKQ 320 >gi|15221749|ref|NP_173854.1| NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / ribonuclease III [Arabidopsis thaliana] gi|9743333|gb|AAF97957.1|AC000103_7 F21J9.11 [Arabidopsis thaliana] gi|15010594|gb|AAK73956.1| At1g24450/F21J9_210 [Arabidopsis thaliana] gi|20334854|gb|AAM16183.1| At1g24450/F21J9_210 [Arabidopsis thaliana] gi|332192410|gb|AEE30531.1| nuclear fusion defective 2 protein /ribonuclease III [Arabidopsis thaliana] Length = 191 Score = 89.0 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 10/152 (6%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 A + L+ +IGY F N +LL +A+TH+S S QE+ + L G I+ +S Sbjct: 45 ATDLAKLQTQIGYKFNNINLLRRAMTHASFS---QENNKALSIFGTHIIETAVSLQFLAK 101 Query: 63 FDSAKEGELSVRFNSLVS-AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 L + + + +C+ L L IRVS+ ++I + Sbjct: 102 DIDISSKALGRLISEVSNVESSCALDGDRLGLGKIIRVSTKTDAS----NSAILCTGFRA 157 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 + A+ +D G + +WK ++G+ Sbjct: 158 IFGAIAIDAG--TVDEAIKVFWKVHGARAGRL 187 >gi|284054885|ref|ZP_06385095.1| ribonuclease III [Arthrospira platensis str. Paraca] Length = 131 Score = 89.0 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 3/101 (2%) Query: 112 TSIQADVVESLIAALYLDGG-IEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAK 168 S AD E+++AALYL +E+ ++D + +RA + + R++ K LQEW + Sbjct: 7 ESRLADCFEAVLAALYLSTNTLELIRPWLDPHLLERATEIFNDPARQNYKAALQEWTQSC 66 Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + + P+YKV + RFT V + G + + Sbjct: 67 YKILPQYKVNETGYAGDEGRFTASVWLRDEQLGTGTGKTIK 107 >gi|326485005|gb|EGE09015.1| dicer-like protein 2 [Trichophyton equinum CBS 127.97] Length = 1417 Score = 89.0 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 51/282 (18%), Positives = 104/282 (36%), Gaps = 73/282 (25%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S +E I Y+F ++LL +L+H S + + +Y+RLEFLGD IL +++ LF Sbjct: 1136 SKIEPLIDYSFTKKALLATSLSHPS-NLISRMTYQRLEFLGDSILDNIVTRALFRCKKEI 1194 Query: 67 KEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRVS 100 ++ + +LV+A+ + + ++ L ++ S Sbjct: 1195 PHQDMHLIRTALVNADFLAFLCMNTSTDVTREDVCVSPTGEVEVTSSTHQVSLWQYMSHS 1254 Query: 101 S----------------------DLRKDVCSF---------MTSIQADVVESLIAALYLD 129 S + S+ +D++ES++ A+++D Sbjct: 1255 STDIVETQQAIARTFEELRDQIEKALRSGASYPWTLLSTLNAPKFFSDIIESILGAIFID 1314 Query: 130 --GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 G I F+ + Y ++ + G K L A + ++ +Y V+ Sbjct: 1315 SRGSILACQKFLARISLMDYLQRVLEEDGIDFMHPKQRLGVVAQS---LSVKYVVSEVHV 1371 Query: 183 PDHDPRFTVVVEISGLAPAQ---GMDCSKRAAEQVAAAEVLK 221 ++ V + ++ G+ S+ A AA L+ Sbjct: 1372 KPGVTQWKCQVLVGDEEISRVDDGV--SQNQARAKAADLALE 1411 Score = 79.7 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 52/136 (38%), Gaps = 20/136 (14%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 SS S +Y+RLEFLGD L L S L EG LS + +S+VS + A Sbjct: 971 SSTSAREDTNYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKDSIVSNSRLWKAAV 1030 Query: 90 ELDLASFIRV--------------------SSDLRKDVCSFMTSIQADVVESLIAALYLD 129 + L FI K T ADVVESLI A +D Sbjct: 1031 DTGLDQFILTTCFTGAKWRPLYNSTYADNAGKIGEKSTRELSTKTLADVVESLIGAAIID 1090 Query: 130 GGIEVAGTFVDKYWKQ 145 GG ++ + + Sbjct: 1091 GGENKVLRCLELFLPE 1106 >gi|159468548|ref|XP_001692436.1| dicer-like protein [Chlamydomonas reinhardtii] gi|158278149|gb|EDP03914.1| dicer-like protein [Chlamydomonas reinhardtii] Length = 3556 Score = 88.6 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 5/114 (4%) Query: 15 YAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 Y F L +ALTH S + Y+RLEFLGD ++G ++S LF ++ Sbjct: 3277 YCFRRPELCLQALTHVSHPRAAGCGGGYQRLEFLGDAVMGTVVSFWLFRA--GGSAEAMT 3334 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQADVVESLIAA 125 R +LVS + A L L +RV S L + +F+ +QA + + +A+ Sbjct: 3335 ARRKALVSNGPLAAAAVCLGLQRHLRVGSSALLGTLGAFVEEVQAALEDGSLAS 3388 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Query: 39 SYERLEFLGDRILGLL---ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 + +RLEFLGD +L + + L H + EG LS + ++L++ E VA + Sbjct: 2582 NNDRLEFLGDSVLKHIAVLFTFLRDRHDPTCHEGVLSFKRDALIANEVAMDVATDF 2637 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 12/20 (60%), Positives = 15/20 (75%) Query: 112 TSIQADVVESLIAALYLDGG 131 + ADVVE+LI A+YLD G Sbjct: 3494 PKVLADVVEALIGAVYLDSG 3513 >gi|88602406|ref|YP_502584.1| ribonuclease III [Methanospirillum hungatei JF-1] gi|88187868|gb|ABD40865.1| RNAse III [Methanospirillum hungatei JF-1] Length = 151 Score = 88.6 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 6/147 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLI 55 M+A + LE+ GY F ++SLL +ALT + S + L LGD ++ L+I Sbjct: 1 MTAELFPEQLERITGYTFRDKSLLLRALTRLAYSKEQGLSEDSHLDALATLGDAVIELII 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 T L +G +S++ LV+ AR + L ++R + + Sbjct: 61 LTRLV-KGGEHDKGAVSLKKMDLVNMSVLRDAARSIHLEQYVRWGKGEARMHVWTSGRVL 119 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKY 142 A+ +E+ ALYLDGGI+ A +++ Sbjct: 120 AECMEAFAGALYLDGGIDAAEEVLERL 146 >gi|326475978|gb|EGD99987.1| hypothetical protein TESG_07315 [Trichophyton tonsurans CBS 112818] Length = 1435 Score = 88.6 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 58/149 (38%), Gaps = 22/149 (14%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F N L+ A+T +S +Y+RLEFLGD L L S L EG LS + + Sbjct: 978 FQNIQLVLTAITATSAREDT--NYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKD 1035 Query: 77 SLVSAETCSQVARELDLASFIRV--------------------SSDLRKDVCSFMTSIQA 116 S+VS + A + L FI K T A Sbjct: 1036 SIVSNSRLWKAAVDTGLDQFILTTCFTGAKWRPLYNSTYADNAGKIGEKSTRELSTKTLA 1095 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 DVVESLI A +DGG ++ + + Sbjct: 1096 DVVESLIGAAIIDGGENKVLRCLELFLPE 1124 Score = 85.9 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 103/282 (36%), Gaps = 73/282 (25%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S +E I Y+F ++LL +L+H S + + +Y+RLEFLGD IL +++ LF Sbjct: 1154 SKIEPLIDYSFTKKALLATSLSHPS-NLISRMTYQRLEFLGDSILDNIVTRALFRCKKEI 1212 Query: 67 KEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRVS 100 ++ + +LV+A+ + + ++ L ++ S Sbjct: 1213 PHQDMHLIRTALVNADFLAFLCMNTSTDVTREDVCVSPTGEVEVTSSTHQVSLWQYMSHS 1272 Query: 101 S----------------------DLRKDVCSF---------MTSIQADVVESLIAALYLD 129 S + S+ +D++ES++ A+++D Sbjct: 1273 STDIVETQQAIARTFEELRDQIEKALRSGASYPWTLLSTLNAPKFFSDIIESILGAIFID 1332 Query: 130 GG--IEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I F+ + Y ++ + G K L A + ++ +Y V+ Sbjct: 1333 SRGLILACQKFLARIGLMDYLQRVLEEDGIDFMHPKQRLGVVAQS---LSVKYVVSGVHV 1389 Query: 183 PDHDPRFTVVVEISGLAPAQ---GMDCSKRAAEQVAAAEVLK 221 ++ V + ++ G+ S+ A AA L+ Sbjct: 1390 KPGVTQWKCQVLVGDEEISRVDDGV--SQNQARAKAADLALE 1429 >gi|315051166|ref|XP_003174957.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893] gi|311340272|gb|EFQ99474.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893] Length = 1425 Score = 88.2 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 52/286 (18%), Positives = 101/286 (35%), Gaps = 74/286 (25%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S +E I Y+F R+LL +L+H S + +Y+RLEFLGD IL +++ LF Sbjct: 1142 LSKIEPLIDYSFTKRALLAASLSHPS-NLISGMTYQRLEFLGDSILDNVVTRALFRCDKE 1200 Query: 66 AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99 ++ + +LV+A+ + + R + L ++ Sbjct: 1201 IPHQDMHLIRTALVNADFLAFLCMKTSTDERREDVCASPTGNVKVTSSTRRVSLWQYMAH 1260 Query: 100 SSDLR-----------------------KDVCSF---------MTSIQADVVESLIAALY 127 S+ L + + +D+VES++ A++ Sbjct: 1261 SASLDILETQQAMACTFEKLRDEIDDALRSGTRYPWTLLSTLNAPKFFSDIVESILGAIF 1320 Query: 128 LD--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +D G I F+ + Y + G K L A + ++ +Y V+ Sbjct: 1321 IDSRGSIMACHKFLARIGLMGYLSRVLEDDGIDFMHPKQRLGIVAQS---LSVKYIVSDV 1377 Query: 181 SGPDHDPRFTVVVEISGLAPAQ---GMDCSKRAAEQVAAAEVLKRE 223 ++ V + ++ G+ ++ A AA L + Sbjct: 1378 HVKPGVTQWKCQVLVGDQEISRVEDGVSQNQVRA--KAADLALDKL 1421 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 66/159 (41%), Gaps = 24/159 (15%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +T+ IG F + L+ A+T +S +Y+RLEFLGD L L S L Sbjct: 959 NTILSSIG--FKDIKLVLTAITATSA--RENTNYQRLEFLGDSALKLHASMQLLADHPIW 1014 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR--------------------VSSDLRKD 106 EG LS + +S+VS + A + L FI V + R+ Sbjct: 1015 HEGILSKKKDSIVSNSRLWKAAVDTGLDRFILTTCFTGAKWRPLYNSTYRHNVGTARREQ 1074 Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 T ADVVESLI A +DGG ++ + + Sbjct: 1075 TRELSTKTLADVVESLIGAAIVDGGENKVLRCLELFLPE 1113 >gi|297851136|ref|XP_002893449.1| hypothetical protein ARALYDRAFT_472903 [Arabidopsis lyrata subsp. lyrata] gi|297339291|gb|EFH69708.1| hypothetical protein ARALYDRAFT_472903 [Arabidopsis lyrata subsp. lyrata] Length = 190 Score = 88.2 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 10/152 (6%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 A +TL+ +IGY F N +LL +A+TH+S S QE+ + L G I+ +S Sbjct: 44 ATDLATLQTQIGYKFNNTNLLRRAMTHASFS---QENNKALSIFGTNIIETSVSLQFLAK 100 Query: 63 FDSAKEGELSVRFNSLVS-AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 L + + +C+ L L IRVS ++I + Sbjct: 101 DIDISSKALRRLIAQVSNVESSCALDGDRLGLGKIIRVSPKTDAS----NSAILCAGFRA 156 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 + A+ +D G+ + +WK + G+ Sbjct: 157 IFGAIAIDTGM--VDEAIKVFWKVHGDRPGRL 186 >gi|323307668|gb|EGA60933.1| Rnt1p [Saccharomyces cerevisiae FostersO] Length = 253 Score = 88.2 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 66/171 (38%), Gaps = 25/171 (14%) Query: 16 AFANRSLLEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++ + H S S ERLEFLGD IL +++ +++N F Sbjct: 61 EIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDY 120 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVS---SDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LVS E Q + + ++ + D + + + ADV E+ I Sbjct: 121 SEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYI 180 Query: 124 AALYLD---GGIEVAGTFVDKYWKQRALKS----------GKFRRDAKTEL 161 L D + ++ K K ++ K +AK +L Sbjct: 181 GGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQL 231 >gi|118370147|ref|XP_001018276.1| Dicer-related RNase III protein Dcr1p, putative [Tetrahymena thermophila] gi|89300043|gb|EAR98031.1| Dicer-related RNase III protein Dcr1p, putative [Tetrahymena thermophila SB210] Length = 1903 Score = 87.8 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 93/249 (37%), Gaps = 36/249 (14%) Query: 4 LRYSTLEKRIGYAFANRSLLEKAL-THSSISHSYQ-ESYERLEFLGDRILGLLISTLLFN 61 + S EK + Y F ++SLL KAL HS+ + + + Y+ LEFLGD ++ +L+ + ++ Sbjct: 1637 IAISGFEKILNYTFKDKSLLIKALNCHSNSNFEHYFQDYQILEFLGDALIEILVVSHGYH 1696 Query: 62 HFDSA-----KEGELSVRFNSLVSAETCSQVARELDLASF-IRVSS-------------- 101 + + L+S + S++A + + +S Sbjct: 1697 ISRNRQKKINSPYFFCEMKSLLLSNDFMSRMAILNKFHYYALNISKYQQDEIIQFIEDCN 1756 Query: 102 -----DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR- 155 + + D+ ES+ A+ +D I + K + + F + Sbjct: 1757 LNTKFKESVSHQANSPKVLGDLWESVAGAIIMDSDISTFVSIYGKLYAPYIIHFVTFYQK 1816 Query: 156 ---DAKTELQEWAHAKF--GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + K ++Q A + V G + V + I + G+D S+ Sbjct: 1817 IIFNVKEKVQLVAQQTYEQLGKITEVVKDTDG---QYKVKVTILIKQIKVGTGIDYSETL 1873 Query: 211 AEQVAAAEV 219 AE+ A + Sbjct: 1874 AEKKAFQDA 1882 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 3/103 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + LL ++ + S S ++ E LE +GD ++ + S L+ H + E L++ Sbjct: 1360 DLELLIESFSQISYSK--TKNLELLEVIGDVVIKYISSLYLYLHLPNQSENALTMIRTIF 1417 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ + A L +++ D F E+ Sbjct: 1418 INNKYLGISAFRNGLQFYVQTKRPSSYD-WRFNLFNLNSFTEA 1459 >gi|224613128|dbj|BAH24234.1| dsRNA-specific ribonuclease RNaseIII [Porcelain vine witches'-broom phytoplasma] Length = 131 Score = 87.8 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 2/96 (2%) Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 I AD E+L A+YLD G A L + D KT+LQE ++ Sbjct: 4 KRIMADTFEALFGAIYLDLGYLTAKKVFHNIVLPH-LAKTIYIIDFKTQLQEIVQSEKK- 61 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 T +YK+ G H F V + G + Sbjct: 62 TIQYKIVQEQGFAHSKNFVAEVYLEKNLLGTGEGNT 97 >gi|213408739|ref|XP_002175140.1| mitochondrial ribosomal protein subunit L3 [Schizosaccharomyces japonicus yFS275] gi|212003187|gb|EEB08847.1| mitochondrial ribosomal protein subunit L3 [Schizosaccharomyces japonicus yFS275] Length = 322 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 84/237 (35%), Gaps = 22/237 (9%) Query: 4 LRYSTLEKRIGY--AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ TL+KR+ +F NR+L +AL S + L +G + L + Sbjct: 48 VKIYTLKKRLRLLESFPNRTL-ARALIDKSFPTHISNTNSLLWPIGRVLRDLYTLEYIKT 106 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASF------------IRVSSDLRKDVCS 109 + E ++V + L +Q+A L + I S + Sbjct: 107 KYPRLPEEGVAVLKDGLAGTAVLNQLAAMFGLETIGKDENLVDGMGKIIYSRVPAESFRQ 166 Query: 110 FMTSIQADVVE----SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQE 163 S +++ V S++A +Y+ G A FV + R L + K +L+ Sbjct: 167 GRESYKSEAVARTILSILAGVYIHEGNAAARLFVQNFMLSRYLPPDTLMLFQKPKQQLRA 226 Query: 164 WAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 P Y + +G +P F V V G QG S + ++ AA Sbjct: 227 LCRRLGVSKPVYYLEAETGRKSREPVFVVGVYADGERIGQGQASSLKLSQSQAAHNA 283 >gi|167046030|gb|ABZ10546.1| dicer-like protein D [Placozoa sp. DMJ-2008] Length = 351 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 68/178 (38%), Gaps = 43/178 (24%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S + + Y F N L A THSS++ E+Y+RLE+LGD L L+ ++ Sbjct: 174 SCILRNTDYQFNNFYWLRIAFTHSSVA---SENYQRLEYLGDATLEYLLIEFVYCRKPYF 230 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFM----------- 111 G++S + + +T S +A + IR S D+ + +F Sbjct: 231 GPGKISHFKSVMTRNQTFSLIAIAFQFYTHIRCHSKLKLDIMDSIQNFKEILLDNHQDDH 290 Query: 112 -----------------------TSIQADVVESLIAALYLDGG--IEVAGTFVDKYWK 144 + ADV E+ IAA+YLD G + V K + Sbjct: 291 QPDIGHFANLAYQLYTSNRYQKLPKVCADVFEAFIAAIYLDCGKKLRTVWKVVYKMVQ 348 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 37/155 (23%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF-- 96 ++ERLE LGD L + + F + KEG +S+ VS S+ ++ L + Sbjct: 7 NHERLEILGDSYLKFITTADYFFRNPNMKEGAMSLMRAINVSNSHLSRTSKLKGLTLYQF 66 Query: 97 ----------------IR-----VSSDLRKDVCSFMTS----------IQADVVESLIAA 125 IR V++++ D S +D VE L+ Sbjct: 67 NTPFKLKQWLPPGFTCIRNNANLVANNMLTDGSKQRDSESFKQVMSVKNISDTVEGLVGV 126 Query: 126 LYLDGG-IEVAGTFVDKYWKQRALKSGKFRRDAKT 159 L G ++ A + + + +D K+ Sbjct: 127 YSLASGPVDAAR--LLPWIGLDIDPNVLIEKD-KS 158 >gi|50897087|dbj|BAD34724.1| Dicer-related RNase III protein Dcl1p [Tetrahymena thermophila] Length = 1275 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 93/249 (37%), Gaps = 36/249 (14%) Query: 4 LRYSTLEKRIGYAFANRSLLEKAL-THSSISHSYQ-ESYERLEFLGDRILGLLISTLLFN 61 + S EK + Y F ++SLL KAL HS+ + + + Y+ LEFLGD ++ +L+ + ++ Sbjct: 1009 IAISGFEKILNYTFKDKSLLIKALNCHSNSNFEHYFQDYQILEFLGDALIEILVVSHGYH 1068 Query: 62 HFDSA-----KEGELSVRFNSLVSAETCSQVARELDLASF-IRVSS-------------- 101 + + L+S + S++A + + +S Sbjct: 1069 ISRNRQKKINSPYFFCEMKSLLLSNDFMSRMAILNKFHYYALNISKYQQDEIIQFIEDCN 1128 Query: 102 -----DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR- 155 + + D+ ES+ A+ +D I + K + + F + Sbjct: 1129 LNTKFKESVSHQANSPKVLGDLWESVAGAIIMDSDISTFVSIYGKLYAPYIIHFVTFYQK 1188 Query: 156 ---DAKTELQEWAHAKF--GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + K ++Q A + V G + V + I + G+D S+ Sbjct: 1189 IIFNVKEKVQLVAQQTYEQLGKITEVVKDTDG---QYKVKVTILIKQIKVGTGIDYSETL 1245 Query: 211 AEQVAAAEV 219 AE+ A + Sbjct: 1246 AEKKAFQDA 1254 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 3/103 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + LL ++ + S S ++ E LE +GD ++ + S L+ H + E L++ Sbjct: 732 DLELLIESFSQISYSK--TKNLELLEVIGDVVIKYISSLYLYLHLPNQSENALTMIRTIF 789 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ + A L +++ D F E+ Sbjct: 790 INNKYLGISAFRNGLQFYVQTKRPSSYD-WRFNLFNLNSFTEA 831 >gi|294611999|gb|ADF27744.1| ribonuclease III [Ehrlichia ruminantium] Length = 71 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%) Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA 165 + ++ + +E+LI A+YLDGG++ A F+ +WK A +DAKT LQEWA Sbjct: 2 CGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWA 61 Query: 166 HAKFGVTPEY 175 +K P Y Sbjct: 62 QSKGFPAPSY 71 >gi|321463655|gb|EFX74669.1| hypothetical protein DAPPUDRAFT_251524 [Daphnia pulex] Length = 244 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 55/161 (34%), Gaps = 35/161 (21%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE+ + Y F ++LL +AL +S ++ YERL LGD LG L + + F+ Sbjct: 40 LEKLEEILNYEFRYKNLLLQALIYSRKIAVFRPCYERL-HLGDAFLGGLAAEMCFDALPF 98 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL-----------RKDVCSFMTS- 113 LS + LV + + + F++ +K S Sbjct: 99 YPPSVLSELKSVLVCNNSLGVLVVKFKFHKFLKRLPREIQTLIDTFAKKQKANGHKFPSA 158 Query: 114 ----------------------IQADVVESLIAALYLDGGI 132 + D+ ES+ A+Y D Sbjct: 159 YYEIVKLGNPPEDYAATNVPPDVLGDIFESIAGAVYKDSNY 199 >gi|154149851|ref|YP_001403469.1| ribonuclease III [Candidatus Methanoregula boonei 6A8] gi|153998403|gb|ABS54826.1| ribonuclease III [Methanoregula boonei 6A8] Length = 154 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 12/146 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61 S LE R+G+ +R++L+ ALT + + + + L +GD +LG +++T L+ Sbjct: 5 LSELETRLGFTIKDRTILDAALTRQAYINENPTAGNDCMDPLATVGDAVLGAVVATRLYE 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS-IQADVVE 120 +G L+ V+ + A + L FIR K+ S E Sbjct: 65 SGI-RDKGTLTSEKIRGVNRDKTRAFAEKFQLHKFIRWGKGEEKNKVWEQGSQAFDAAFE 123 Query: 121 SLIAALYLDG------GIEVAGTFVD 140 +LI A++LD G+ ++ Sbjct: 124 ALIGAVFLDTRRQGKDGLAAVQVLLE 149 >gi|255633098|gb|ACU16904.1| unknown [Glycine max] Length = 188 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 8/127 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 TL+K++GY F + LL +A+TH+S S +E+ + LG ++ +S L + Sbjct: 45 LETLQKQLGYTFKSIDLLRRAVTHASFS---EENNKAFAILGASVIETSVSFHLLSRDVD 101 Query: 66 AKEGELSVRFNSLVS-AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EL+ R + + + +C+ L L +RVS ++ ++ Sbjct: 102 LSSKELNRRLSQITNVDSSCAVDGTRLGLHKVVRVSPKTNSSA----PAVVCGAFRAIFG 157 Query: 125 ALYLDGG 131 A+ +D G Sbjct: 158 AVAIDTG 164 >gi|196001803|ref|XP_002110769.1| hypothetical protein TRIADDRAFT_54015 [Trichoplax adhaerens] gi|190586720|gb|EDV26773.1| hypothetical protein TRIADDRAFT_54015 [Trichoplax adhaerens] Length = 366 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 78/229 (34%), Gaps = 34/229 (14%) Query: 23 LEKALTHSSISHSYQE--------------------------SYERLEFLGDRILGLLIS 56 L ALTH S H + S +RL LG + ++ Sbjct: 102 LRMALTHHSFLHQNDDVNYMDDNDYNTGTGVADFKSVEDVYQSNDRLTILGYNAMRHFVT 161 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ + + K + N ++ + +A L +A IR L V T I + Sbjct: 162 EYVYVRYPNLKSSHIYDMINFFMNRDGMVNIAHYLGIADLIRSKILLYNPV---KTRIIS 218 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWK----QRALKSGKFRRDAKTELQEWAHAKFGVT 172 DV +++ A+Y+D G A +FV + R L + Sbjct: 219 DVFCAIVGAIYMDLGPIEARSFVQDFILVQQYGREFSDIIKIEHPIFMLTAILKMQRMQP 278 Query: 173 PEYKVTFRSGPD-HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E ++ SG H P + V ++G S +AA+ A E L Sbjct: 279 LEARLLRESGRATHFPTYVVGAFSGSKLLSEGAGPSIKAAKSAACQEAL 327 >gi|255080010|ref|XP_002503585.1| ribonuclease III/double strand RNA binding domain-containing protein [Micromonas sp. RCC299] gi|226518852|gb|ACO64843.1| ribonuclease III/double strand RNA binding domain-containing protein [Micromonas sp. RCC299] Length = 352 Score = 85.9 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 76/194 (39%), Gaps = 17/194 (8%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDS----AKEGELSVRFNSLVSAETCSQVARELDLASF 96 ER+ F GD+ L L ++ L GE+SV +S S +++ +L Sbjct: 107 ERMAFFGDKYLNLSVAKALERQLLDGDETMSIGEMSVLCSSARSNMLFAKLLPKLLTPDM 166 Query: 97 IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFR 154 + + + ++ES + +Y GG E A + + + A K Sbjct: 167 VAAVPEEAIMEGRQHS--VGTLLESCVYLVYTTGGGEGAAAVDELGTFLLEEAEKQAADV 224 Query: 155 RDAKTELQEWAHAKFGVTPEYKVT-----FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + K L E Y VT SG H RF VE+ G+ A+ + +KR Sbjct: 225 HNYKGALYELIAKGVDG---YVVTKDKMGEASGGAHPQRFETEVELDGVR-ARFLARNKR 280 Query: 210 AAEQVAAAEVLKRE 223 AE+ AA VL++ Sbjct: 281 EAERGAAKRVLEKL 294 >gi|123974683|ref|XP_001313928.1| RNase3 domain containing protein [Trichomonas vaginalis G3] gi|121895887|gb|EAY01056.1| RNase3 domain containing protein [Trichomonas vaginalis G3] Length = 810 Score = 85.9 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 7/144 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFN- 61 ++ Y F N ++ + L S S + +YERLE+LGD +L LL +FN Sbjct: 374 IRKFTEKFNYTFKNWHIVWQFLIDPSYYFRSSQFIHNYERLEYLGDTVLDLLFGISVFNG 433 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ A EG +S + V T S+++ LDL S + S+ D+ + AD+ E+ Sbjct: 434 CYNYANEGLMSELKIAFVKNRTFSKISEILDLKSLLCTSTPTNYDLGKKGS---ADLFEA 490 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ 145 L A+ LD I K ++ Sbjct: 491 LFGAILLDSNISKCIEIFKKIIEE 514 Score = 78.6 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 15/187 (8%) Query: 4 LRYSTLEKRI--GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + + L K + +N + ALTHSS+ + +YER+EF+GD I+ + Sbjct: 557 VDHEKLSKILELDINPSNVTQFTVALTHSSVG---KYNYERIEFIGDLIVKYSLIVSQME 613 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC--------SFMTS 113 F +A E +S+ + L S + + A ++ L + + S Sbjct: 614 AFPNATESGMSIASSFLKSNDFLGKRAYKIGLIDLLSIVRKENSSEDAAKGDIDESRTPK 673 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 DV E++ AA+ GI A FV K K+ + S K +L + +F + Sbjct: 674 YYGDVFEAITAAIAGTFGIITAMRFVIKNSIGKEWPIDSNHPNLPIKVQLLYFLQNEFKI 733 Query: 172 TPEYKVT 178 P + Sbjct: 734 IPNFITI 740 >gi|281414106|ref|ZP_06245848.1| RNAse III [Micrococcus luteus NCTC 2665] Length = 74 Score = 85.9 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%) Query: 23 LEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LE+ALTH S ++ + ERLEFLGD +LG +++ +F + EG+L+ R ++VS Sbjct: 8 LERALTHRSFAYEQGGLPTNERLEFLGDSVLGYVVTDHIFTVYPDLAEGDLARRRAAVVS 67 Query: 81 AETCSQV 87 ++V Sbjct: 68 TRALAKV 74 >gi|167046034|gb|ABZ10548.1| dicer-like protein E [Placozoa sp. DMJ-2008] Length = 359 Score = 85.5 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 64/180 (35%), Gaps = 41/180 (22%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +++E + Y+F NRSLL ALTH S S SYE+L FLGD +L I L+ + Sbjct: 171 NSVETILNYSFRNRSLLMLALTHKSYSGLESISYEKLAFLGDTLLIYQIYLFLYTQYTDY 230 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---------------------- 104 + + + L VA DL F+ S Sbjct: 231 QPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLHKSRELTLQIDEIYQALEADDVQSFSST 290 Query: 105 -KDVCSFMTSI----------------QADVVESLIAALYLDG--GIEVAGTFVDKYWKQ 145 + CS+ D +++AA++LD + AG ++ Sbjct: 291 VQSGCSYKMKTTLLLEKLSIEQFVPKELGDTFAAVVAAVFLDNYPHEDTAGRIINSLLNP 350 Score = 43.1 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +A+T SS + + ERLEFLGDR L I+ S E+ R L + Sbjct: 1 EAITLSSAQDHF--NLERLEFLGDRYLNYKITLTTLLEHPSWSINEVINRMRFLTKNKKL 58 Query: 85 SQVARELDLASFI 97 ++ + +I Sbjct: 59 FRLGAGRRIPYYI 71 >gi|168021275|ref|XP_001763167.1| dsRNA-specific nuclease dicer and related ribonuclease [Physcomitrella patens subsp. patens] gi|162685650|gb|EDQ72044.1| dsRNA-specific nuclease dicer and related ribonuclease [Physcomitrella patens subsp. patens] Length = 961 Score = 85.1 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 82/242 (33%), Gaps = 51/242 (21%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 ALT +S ++ SYER E L D L ++S LF F S EG+L+ +VS Sbjct: 511 LALTAASCQETF--SYERAELLSDAYLEWVVSHRLFLKFPSKHEGQLTRMRQKIVSNSVL 568 Query: 85 SQVARELDLASFIR-----------------VSSDLRKDVCSFMTS-------------- 113 Q A E L S+I+ DLR S S Sbjct: 569 YQHALEKGLQSYIQADRFAPSRWAAPGVPPAFDEDLRDGDDSDKESKPEVEREVVEIVGR 628 Query: 114 ---IQADVVE-------SLIAALYLD--GGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161 ++A V ++ + +L G T V + Q + L Sbjct: 629 LTDLRAAAVNNENFARVAVKHSYHLHLRHGSTALETQVFEPLLQPMVSPETLPIHPVRGL 688 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 QE + EYKV+ TV V + G+ K+ A+++ A L Sbjct: 689 QERCQQEAEGL-EYKVSRAESVA-----TVEVYVDGVQIGSTQSAQKKMAQKLGARNALV 742 Query: 222 RE 223 + Sbjct: 743 KL 744 Score = 42.8 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 14/32 (43%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + P+YK SGP H +FT V + Sbjct: 782 LCLKRQWPMPQYKCVLESGPAHAKKFTFSVRV 813 >gi|19113464|ref|NP_596672.1| mitochondrial ribosomal protein subunit L3 [Schizosaccharomyces pombe 972h-] gi|74644177|sp|O43042|RM03_SCHPO RecName: Full=60S ribosomal protein L3, mitochondrial; Flags: Precursor gi|2950480|emb|CAA17794.1| mitochondrial ribosomal protein subunit L3 [Schizosaccharomyces pombe] Length = 326 Score = 85.1 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 81/244 (33%), Gaps = 36/244 (14%) Query: 5 RYSTLEKRIGYAFANR-SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + TL+KRIG + +L +AL ++ + Q S E+L +G + + + Sbjct: 46 KVYTLKKRIGLPESYPMKVLVQALIDKTVVQNPQYSNEKLWSIGKVFGDFYVLEYIKCKY 105 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-----SFMTSIQADV 118 E + N + ++ SQ+A L R L++ + Sbjct: 106 PRLPEEAVHGMQNGWMGSKALSQLATIWGL-EVQRREEGLQESFGKVLAKRADPEMLRKP 164 Query: 119 VE------------SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ---- 162 E +++ +YL G F++ + + L D +T LQ Sbjct: 165 GEIYKDEAARRAILAILGGVYLHQGFNDTKKFINDHILSKQL-------DPRTMLQLQWP 217 Query: 163 -----EWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 P Y++ +G +P F + QG S AEQ AA Sbjct: 218 RRQLSRLCKRLSLKEPVYRIIAETGRKSREPVFVIGAYSGHHLLGQGQASSLNLAEQQAA 277 Query: 217 AEVL 220 L Sbjct: 278 YNSL 281 >gi|296417647|ref|XP_002838464.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634403|emb|CAZ82655.1| unnamed protein product [Tuber melanosporum] Length = 398 Score = 85.1 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 46/253 (18%), Positives = 72/253 (28%), Gaps = 33/253 (13%) Query: 2 SALRYSTLEKRIGYAFANR-SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 ++ + + L R+ L +AL H S + + L LG ++ + L Sbjct: 109 TSAKLAALHARLSLHPKFPVQTLARALIHPSADPNPLFNNRSLTTLGSALINYYATEWLL 168 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELD--------------LASFIRVS------ 100 + L ++ V A+ + + RE L F R+ Sbjct: 169 CTYPRLPAEVLRAALSAYVGAKALASMGREWGVESAFEPRADVDAGLLQFKRLPPGPEVE 228 Query: 101 ---------SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 R A V S A +YL G+ F ++ R L Sbjct: 229 ASGYKWWQEKGERWTNGVPEEEATASFVTSTFAGVYLHEGVGPVKQFFRQHVLSRKLDID 288 Query: 152 KFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSK 208 K EL + P + +G P F V V +G S Sbjct: 289 KLFNFVQPTRELSSLCSREGFEPPIARHISETGRRSIAPVFVVGVYSGLEKIGEGHGGSM 348 Query: 209 RAAEQVAAAEVLK 221 A AA LK Sbjct: 349 NEARIRAAVNALK 361 >gi|269966648|ref|ZP_06180727.1| hypothetical protein VMC_21570 [Vibrio alginolyticus 40B] gi|269828715|gb|EEZ82970.1| hypothetical protein VMC_21570 [Vibrio alginolyticus 40B] Length = 445 Score = 85.1 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 17/178 (9%) Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSL---VSAETCSQVARELDLASFIRVSSDLRKDV 107 L L+ L+ N A G +SV +L V + EL L IR S + Sbjct: 14 LELVAVHLIQNTVGLASTGHVSVVKKALIAGVQGKLL-----ELGLIDKIRKGSGI---T 65 Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA-KTELQEWAH 166 + I+ VV L+ ++ I ++ K + ++ K LQE+A Sbjct: 66 DAESEKIERQVVMQLLGTSWVMNQI----GWLYKLAQTLDIRLDASNEKPMKMVLQEYAQ 121 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 ++ P+Y V SGP H+ F+V I A G SK+ A + AA ++ ++ Sbjct: 122 SRKLQAPQYDVVEISGPQHNQVFSVQCSIVNEK-AVGSGNSKKKASEDAAIKLYQKLN 178 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 K +D+KT+LQE A + P Y++ G +H+ F V +G G S Sbjct: 370 NKSGKDSKTQLQEVAQDLKLLLPIYEIAQTEGEEHNLIFKVKCSFNGQFTF-GEGTSFNV 428 Query: 211 AEQVAAAEVLKR 222 A Q AA +L++ Sbjct: 429 ASQQAAMVMLQK 440 >gi|321456672|gb|EFX67773.1| hypothetical protein DAPPUDRAFT_115150 [Daphnia pulex] Length = 228 Score = 85.1 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 70/193 (36%), Gaps = 39/193 (20%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +EK IGY F N+ LL +A+THSS ++ ESY E++GDR+LG ++ + + Sbjct: 26 LEEVEKTIGYIFKNKLLLIQAMTHSSYKNNCLTESYNEQEWIGDRVLGFEMAKFVSLNCQ 85 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-------------------SSDLRK 105 S F +L S E + + + I++ Sbjct: 86 D-TVDAKSATFATLTSNEFWAVLTVRHGIHKHIKLCDNNLTAKIDAFAEQQTRNGHQHMH 144 Query: 106 DVCSFMTSI----------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 + S+ ADV E+L A++ D G T+ + Sbjct: 145 KFFEIVESVDDPELLFATFTEPPKELADVWEALAGAIFQDSGFSNDITW--AVIAPLLVP 202 Query: 150 SGKFRRDAKTELQ 162 GK K +Q Sbjct: 203 DGKISYWPKNPVQ 215 >gi|312220987|emb|CBY00928.1| hypothetical protein [Leptosphaeria maculans] Length = 495 Score = 84.7 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 91/260 (35%), Gaps = 60/260 (23%) Query: 19 NRSLLEKA-LTHSSISHSYQE-----------SYERLEFLGDRILGLLISTLLFNHFDSA 66 N L +A TH S + + YERLE+ GD + L+ + L N F Sbjct: 151 NEPHLHQAVFTHRSAVINPGDLVAMSKLDLGLDYERLEYSGDAYIELIATRALCNRFPQV 210 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF-MTSIQADVVESLIAA 125 EL LV T S+ + R+S L + S + AD+ E+ IA Sbjct: 211 DVPELCSWRERLVENSTLSKFSDAYGFPD--RLSHRLFVERGSKAWMKVSADIFEAYIAG 268 Query: 126 LYL---DGGIEVAGTFVDKYWKQRALK-SGKFRRDA--KTELQEWAHAKFGVTPEYK--- 176 L + G +A ++ + W + L K + K EL + K GVT +Y+ Sbjct: 269 LVESDPEHGFHIAEEWLTELWAPQLLSFQAKVIENPKAKDELSKLVMCK-GVTLQYREDK 327 Query: 177 -VTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSK------------------RAAE 212 +TF +G R+ + + + G +K + A Sbjct: 328 PMTFDTGS--IQRYYIGIYLTGWGYEDEWIGSGEGQNKSQAGIAAATAAIRNSAVVKDAA 385 Query: 213 QVAA---------AEVLKRE 223 Q A E L +E Sbjct: 386 QKKAELLQSKRLEKEALAKE 405 >gi|290983750|ref|XP_002674591.1| predicted protein [Naegleria gruberi] gi|284088182|gb|EFC41847.1| predicted protein [Naegleria gruberi] Length = 809 Score = 84.7 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 12/148 (8%) Query: 14 GYAF-ANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFN--HFDSAK 67 GY F + L+ A T S +H + YERLEF+GD ++ L L D +K Sbjct: 357 GYRFLKDPLLIRVAHTFPSYAHKMNFGRGHYERLEFMGDSVVNLTACVELIKSCRNDDSK 416 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 +G+ + F L++ ++ ++ A +L ++ SSD F Q++V+ES+I ALY Sbjct: 417 KGDWNAGFTVLIANDSITREAEKLQISEHFLNSSD------KFSKKAQSNVIESIIGALY 470 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + GI A +F + ++ ++ Sbjct: 471 MAEGIRGARSFAKELLIPTSIDFKCLKK 498 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 100/291 (34%), Gaps = 84/291 (28%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------------------Y 36 L+ + Y F + L+++AL S +++ + Sbjct: 529 IEKLQDILHYRFRDVGLIQEALISCSYNNTFMDLRNVPMTEKIQKFLKKRNDSKIVGLYH 588 Query: 37 QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA--ETCSQVARELDLA 94 + E+L+ LG +L +++ ++ F A+ +L++ + ++S + S + + Sbjct: 589 LYNNEQLKLLGSALLKFMVTEFVYKRFTEAQPSKLTLLAHQIISKQGKVFSAIHEKFRFD 648 Query: 95 SFIRVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGG-----IEVAG----------- 136 F+ ++ D+ + + IQ D +L+ A+++D E A Sbjct: 649 QFL-----MKTDIDADYSEIQQSYDCFTALLGAIFMDQDCLFYKFEFATISNTYTEELAN 703 Query: 137 ----------------------TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 +F+ Y +Q L K LQ P Sbjct: 704 STDPCSSYFLKRHDVTPDKFFYSFLFPYIEQFELSPYTIEPPKKHTLQHLIQVNHKSVPS 763 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 Y D F V + ++G ++G+ SK AE A + ++ G+ Sbjct: 764 YV----KNQDVSQEFCVTIMVNGQEFSKGV-SSKSFAE--AEEQAIE-MGL 806 >gi|168021239|ref|XP_001763149.1| predicted protein [Physcomitrella patens subsp. patens] gi|162685632|gb|EDQ72026.1| predicted protein [Physcomitrella patens subsp. patens] Length = 496 Score = 84.7 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 56/289 (19%), Positives = 100/289 (34%), Gaps = 74/289 (25%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI------------------------------- 32 LR+ L +++G + +R LL + L H S Sbjct: 204 LRFRILSEKLGSSIHSRELLLRILVHKSYYLSKMPQSMKENKLRKPLMSWQRSETMDDDN 263 Query: 33 ----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG----------ELSVRFN-- 76 S ++ E+ +L +GD +L L S L G + ++R Sbjct: 264 LMSFSDAHGEARLQLALVGDTVLNLAASLHLIRRNPLLSTGLWESFVFVCRKWTLRKELD 323 Query: 77 -----------SLVSAETCSQV-ARELDLASFIRVSSDLRKDVCSFMTSIQ-------AD 117 + V ++V LDL + + T++ AD Sbjct: 324 SLSCDAGFNNGAKVCNSNLARVWCTLLDLRELVLCDPPFSQSKKPSATTLLELQMKTCAD 383 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+ I LY++ G+E A FV+ L + +R+ L E P+YK+ Sbjct: 384 TLEAYIGGLYVEKGLESALKFVETR-LLPLLLLAEPKRNPVALLHERCVLTLQEKPDYKL 442 Query: 178 TFRSGPDHDPR----FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G D+ + V + GL + G+ S++ A + AA + L + Sbjct: 443 I---GIDNQNTPNELCRIRVYVKGLRMSTGIGKSQKLARRDAAEKALLK 488 >gi|221104212|ref|XP_002155760.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 363 Score = 84.7 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 79/251 (31%), Gaps = 46/251 (18%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----------------ESY-------- 40 + R+ F + L+ AL+HSS + E Sbjct: 84 EIKAFQFRLNTHFKDEGLMISALSHSSFVDELKLFNEQLVTSNELGKKFEDNDFQKRLDL 143 Query: 41 ---------ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 E+L +G + +I T L+ F + + N L+S +A+ L Sbjct: 144 KNLMSSISSEKLALVGMELSISVIKTALYKRFPNLTVHACNDIINFLISRSNIVHLAKNL 203 Query: 92 DLASFIRVSSDLRKDVCSF-------MTSIQADVVESLIAALYLDGGIEVAGTFVD---- 140 + + +S ++ + +D +LI A+ +D G + FV+ Sbjct: 204 AIEELLLLSKEIENQDVNDQFYTNFIKEDFISDAFFALIGAIEIDQGYNASKKFVEDFVV 263 Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKF-GVTPEYKVTFRSGPDHD-PRFTVVVEISGL 198 Q L + K EL+ P +V +G D P + V + Sbjct: 264 ALIDQEELSKYIKLENPKQELESILQMHGIFCKPVARVIAETGISTDFPFYYVGIYCDKF 323 Query: 199 APAQGMDCSKR 209 +G S R Sbjct: 324 KIGEGSGYSIR 334 >gi|238586858|ref|XP_002391299.1| hypothetical protein MPER_09293 [Moniliophthora perniciosa FA553] gi|215455774|gb|EEB92229.1| hypothetical protein MPER_09293 [Moniliophthora perniciosa FA553] Length = 267 Score = 84.7 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 21/214 (9%) Query: 21 SLLEKALTHSSISHSYQES---------YERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 ++++A TH + YQ+ +L +G+ ++GL + + + L Sbjct: 5 DIIQQACTHQTFLQLYQKHKPDDPAPATNAQLAAIGNSLMGLFATEFVRASYPYLPTRVL 64 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRV--SSDLRKDVCSFMTSIQADVVESLIAALYLD 129 ++ V TC+ VA+E+ +R S + + + +L A +Y Sbjct: 65 KAAVSAHVGPLTCANVAQEMGAVPLLRWHRSRGTLTKPGTLHSDALTSIPRALTAFVYRK 124 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPR 188 + Q ++ D K L E PE +G + P Sbjct: 125 RSLPSGRAI------QVDIRGMLKFLDPKKALLEMVEKYGRERPE---IQETGRYSNSPV 175 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F V + +G S + AE AA + L R Sbjct: 176 FVVGIYSGEEQLGEGFGSSLKMAEYRAAEDALHR 209 >gi|13358446|ref|NP_078726.1| Ribonuclease III [Lymphocystis disease virus 1] Length = 251 Score = 84.7 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 83/224 (37%), Gaps = 40/224 (17%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSVRFNSL 78 L +A T +S+ +YE E LGD + + + F + + ++ + Sbjct: 31 LIQAFTPASVDPII--NYESFEILGDGVAAYFLPMYFYKTFPQLQNAKGVKAIARLKINY 88 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL--YLDGGIE--- 133 S + + +A+ L +I+ +L+ D + DV ES + A+ LDG Sbjct: 89 ASRRSFATIAKFLGFWPYIKKPKNLKCD----QKKLLEDVFESFLGAVCLILDGHFNVEG 144 Query: 134 ----VAGTFVDKYWKQRALKSG-KFRRDAKTELQEWA---HAKFGVTPEYKVTFRSGPDH 185 V F+ + ++ K D KT L+E A+ GV Y+ Sbjct: 145 VGAAVCFNFLKNIFDTMTIEINYKALFDPKTRLKELMDIYTAELGVL-AYR--------- 194 Query: 186 DPRF--TVVVEISGLAPAQGMDCSKRAAEQVAA---AEVLKREG 224 F I +K+ EQ ++ E+L+++G Sbjct: 195 --HFNNKTDCYIGDKLMITVYGSNKKDREQDSSDKVLELLEKQG 236 >gi|321460745|gb|EFX71784.1| hypothetical protein DAPPUDRAFT_111332 [Daphnia pulex] Length = 134 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 2/91 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LEK +GY F N+ L+ ALTH++ + + +RLE LGD+ LG +I + + + Sbjct: 38 LEKILGYEFQNKDNLKLALTHTTSNPIKCPSKDSDRLETLGDKFLGAMIMVKYYKTYPTY 97 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFI 97 GEL+ + + T + +A ++ L + Sbjct: 98 GAGELANLTSMITCNGTFAVLAVKMGLHGHL 128 >gi|145485799|ref|XP_001428907.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124395996|emb|CAK61509.1| unnamed protein product [Paramecium tetraurelia] Length = 316 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 91/238 (38%), Gaps = 32/238 (13%) Query: 15 YAFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNH--- 62 + F N ++L +ALT+ +Q + E +G IL S L Sbjct: 6 FRFQNINILAQALTNKIHELEFQSKKGIKYPFGNNEEFVVIGQMILEFYFSDYLIQRGYF 65 Query: 63 -----FDSAK-----EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 + + ++ L++ + + +A + L + +++ + + Sbjct: 66 ITLSRYPNKDSSIKKPSDIVQLRQRLLNEKNLADIALQYSLPNIVQIGN---QTALKRNP 122 Query: 113 SIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQ-----RALKSGKFRRDAKTELQEWA 165 I A+ +++++AA Y D G E +K+ + + + +++AK+ E+ Sbjct: 123 KILAESLKAILAAQYYDSGFDLEHVREITQPLFKELLDKGQNIPIAELKQNAKSSFLEFI 182 Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + P+ + ++ + F V +E+ L +KR EQ+ E L + Sbjct: 183 NNFTDLKPKVSIEWKKDANSANVFKVQLELDSLLNITRTGINKRQTEQLVYHEALMKL 240 >gi|321468043|gb|EFX79030.1| hypothetical protein DAPPUDRAFT_319984 [Daphnia pulex] Length = 488 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 39/183 (21%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E + Y ++ +L +A TH + ++Y+RLE +GD LG L + F Sbjct: 83 SLAKFENILHYTSNDKEVLLEAFTHG--NSMKSQNYQRLELIGDAALGFLSALNFFKKSL 140 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110 + G+++ ++ V +T A + ++ + L K + F Sbjct: 141 THTSGDITKLRSACVCNDTFGVWAAKYGFHEHVQNLPPILLKQLNDFLEVVERENFTFAP 200 Query: 111 -----------------MTSIQADVVESLIAALYLDGGIE------VAGTFVDKYWKQRA 147 + S ADV E++ A+ +D + V F+ + Sbjct: 201 FERELAANGQIMATQVAIPSFLADVFEAVEGAIIIDANLSFETLERVYARFMTPVYDSPP 260 Query: 148 LKS 150 L Sbjct: 261 LSP 263 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 69/212 (32%), Gaps = 69/212 (32%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFD 64 E+ + Y+F + +L +ALT +S + +Y+RLE +GD ++ Sbjct: 330 VKAFEEILNYSFNYKEVLLEALT---YGNSIRSLNYQRLEVIGDAPFERELAE------- 379 Query: 65 SAKEGELSVRFNSLVSAETCS-QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + E + QVA + S Q DV E++ Sbjct: 380 ---------------NEEIIATQVA----------------------IPSFQTDVFEAVS 402 Query: 124 AALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A +D E F + + + TP +TF+ Sbjct: 403 GAFIIDSDLSFETLENFFAPFMNSVYDSPPVSPFN-----------QLEKTPG--ITFQK 449 Query: 182 G---PDHDPRFTVVVEISGLAPAQGMDCSKRA 210 G PD P F V +G A G + ++R Sbjct: 450 GKARPDGRPTF--SVYRNGALLATGNNNNRRK 479 >gi|73953914|ref|XP_868240.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 5 [Canis familiaris] Length = 148 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 7/86 (8%) Query: 142 YWKQRALKSGKFRRDAKTELQEWA-----HAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 +W + L D K++LQ+ K P YK GP H +TV V Sbjct: 22 FWNEFILNQD--WNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFK 79 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKR 222 G G S + AE AA + L++ Sbjct: 80 GERIGCGKGPSIQQAEMGAAMDALEK 105 >gi|56692721|ref|YP_164179.1| RNase III [Singapore grouper iridovirus] gi|42517433|gb|AAS18099.1| RNase III [Singapore grouper iridovirus] Length = 375 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 78/225 (34%), Gaps = 24/225 (10%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 EK + + R L K T S+ +YE LE +GD + G N F Sbjct: 15 EKYMPFVLRRRDLWAKVFTPKSV--DPVNNYEALEIVGDGLAGCFFPIYFINRFPQLNSA 72 Query: 70 E----LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 E ++ + S ++ + +A L ++ +D S + DV E+ + A Sbjct: 73 EGVKLVARLKINYASRKSFAAIAGSLGFWQHVKKPTDTVITPTS-KEILLEDVFEAFLGA 131 Query: 126 LYLDG---------GIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEY 175 + + G+ V F+ + + + DAKT L+E K + Sbjct: 132 ISIAVDHHFGIPALGVAVVYDFLKAVFDKIDISLNYVDLFDAKTRLKELIDVKKSELGD- 190 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + G + F + K+ E+ AAA L Sbjct: 191 -LRYVHGNNITQIF-----LGERLVGSATGPIKKDREKDAAARAL 229 >gi|225457085|ref|XP_002280078.1| PREDICTED: similar to NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / ribonuclease III [Vitis vinifera] gi|297733813|emb|CBI15060.3| unnamed protein product [Vitis vinifera] Length = 183 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 8/130 (6%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 +L TL+K+IGY F + LL +A+THSS S +E+ + L LG + +S Sbjct: 38 SLALETLQKQIGYTFQSIGLLRRAMTHSSFS---EENNKALSILGASTIETSVSLQYLKK 94 Query: 63 FDSAKEGELSVRFNSLVS-AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 A +L+ R + + +C+ A L L IRVS ++ + Sbjct: 95 DIEASAKDLNRRISEISQVESSCAVDAMRLGLQKVIRVSPKTNAST----PAVVCGAFRA 150 Query: 122 LIAALYLDGG 131 + A+ +D G Sbjct: 151 IFGAIAMDTG 160 >gi|530452|emb|CAA83781.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 84 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + ++ ++ + ++ALTH+S ++ + SY+RLEFLGD IL + +S LF Sbjct: 1 MNIKNFFEKYNIKINDQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYVSKFLFF 60 Query: 62 HFDSAKEGELSVRFNSLVSA 81 H+ EGEL+ +S V Sbjct: 61 HYSKLGEGELTRLRSSTVRE 80 >gi|164424566|ref|XP_963538.2| hypothetical protein NCU06766 [Neurospora crassa OR74A] gi|157070568|gb|EAA34302.2| predicted protein [Neurospora crassa OR74A] Length = 1421 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLF 60 + + LEK + Y F +SLL +A+TH S + + + YERLEFLGD IL +++ L Sbjct: 1037 SKQLEPLEKAMDYTFNKKSLLIEAMTHPSCAGLGTNESCYERLEFLGDAILDVIVVKRLM 1096 Query: 61 NH--FDSAKEGELSVRFNSLVSAETCSQVAREL 91 + ++ +S+V+A+ + +A E Sbjct: 1097 AETGPNELAHNDMHEHLSSVVTADIMAFLAMEW 1129 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 22/113 (19%) Query: 49 RILGLLISTLLFNHF---DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 ++ I + H + E LS + LV+ + +R+ L +I S+ +K Sbjct: 890 YVVCKPIGKAVAAHHSIVPNHHERLLSQWKDKLVNNVRLCRASRDFGLDEYIINSAASKK 949 Query: 106 DVCSFMT-------------------SIQADVVESLIAALYLDGGIEVAGTFV 139 F+ + ADVVESLI A Y+ GG+ A V Sbjct: 950 WRPKFVEDYMDEMKSPISAETRQMSSKMVADVVESLIGAAYMCGGMSKALECV 1002 >gi|161783812|sp|Q7SCC1|DCL2_NEUCR RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl-2; Includes: RecName: Full=ATP-dependent helicase dcl-2 gi|18376024|emb|CAB91758.2| related to RNA helicase/RNAseIII CAF [Neurospora crassa] Length = 1540 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLF 60 + + LEK + Y F +SLL +A+TH S + + + YERLEFLGD IL +++ L Sbjct: 1156 SKQLEPLEKAMDYTFNKKSLLIEAMTHPSCAGLGTNESCYERLEFLGDAILDVIVVKRLM 1215 Query: 61 NH--FDSAKEGELSVRFNSLVSAETCSQVAREL 91 + ++ +S+V+A+ + +A E Sbjct: 1216 AETGPNELAHNDMHEHLSSVVTADIMAFLAMEW 1248 Score = 74.7 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 68/165 (41%), Gaps = 28/165 (16%) Query: 1 MSALRYSTLEKRIG-YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG---LLIS 56 MS + + R+G N L+ AL S +YERLEF+GD IL L + Sbjct: 959 MSLVAADLMYNRLGCLQLDNLPLITTALI--SSGSRGPTNYERLEFIGDTILKFCACLTA 1016 Query: 57 TLLFNHF---DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT- 112 + L H + E LS + LV+ + +R+ L +I S+ +K F+ Sbjct: 1017 SALSAHHSIVPNHHERLLSQWKDKLVNNVRLCRASRDFGLDEYIINSAASKKWRPKFVED 1076 Query: 113 ------------------SIQADVVESLIAALYLDGGIEVAGTFV 139 + ADVVESLI A Y+ GG+ A V Sbjct: 1077 YMDEMKSPISAETRQMSSKMVADVVESLIGAAYMCGGMSKALECV 1121 >gi|302845712|ref|XP_002954394.1| hypothetical protein VOLCADRAFT_106340 [Volvox carteri f. nagariensis] gi|300260324|gb|EFJ44544.1| hypothetical protein VOLCADRAFT_106340 [Volvox carteri f. nagariensis] Length = 2391 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 28/154 (18%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 +E+ +G+ FA+ L +ALTH S + S Y+R+EFLGD +LG++ S F Sbjct: 2108 NVLAVEELLGHTFAHPKLCVQALTHVSHPTASSCGGGYQRVEFLGDGVLGMVASVWAFCS 2167 Query: 63 FDSAK-----------------------EGELSVRFNSLVSAETCSQVARELDLASFIRV 99 S ++ +LVS + A L +R Sbjct: 2168 VPSRDTIRPVPTSSTSLWIRVPSPHGGTAEHMTTHRTALVSNGPLAAAAVRRGLHQHLRT 2227 Query: 100 SS-DLRKDVCSFMTSIQADVV--ESLIAALYLDG 130 S L + +F+ + Q E+ +A YL+ Sbjct: 2228 GSMSLMAAINNFVAAYQEGDEGPETYLAQRYLES 2261 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 15/83 (18%) Query: 18 ANRSLLEKA--LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 +R LL A LT + + +RLEFLGD +L LL + + +E Sbjct: 1960 RDRRLLLVATSLTAPAAGDPVF-NNDRLEFLGDAVL-----KLLAHVYVYLRE------R 2007 Query: 76 NSLVSAETCSQVARELDLASFIR 98 + V+ + + A E + + + Sbjct: 2008 VAGVNGKRLAD-AVEALIGAHVL 2029 >gi|327282012|ref|XP_003225738.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A-like [Anolis carolinensis] Length = 329 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 60/169 (35%), Gaps = 4/169 (2%) Query: 57 TLLFNHFDSAKEGELSV---RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 + +L +L C A E+ + F + S Sbjct: 43 EEIVASKPGKTPIQLLHEYGTKANLNPIYECENAAGEVHMPIFTYKVTLGNVTGTGEGPS 102 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 + + AAL + G V V + A+ + + + LQE A K P Sbjct: 103 KKIAKHRAAEAALNIMKGNSVVCIAVPDHLIPGAVNQAQNKTNPVGSLQELAIQKGWKLP 162 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 EY + +GP H FTV I GM SK+ A++ AA ++L++ Sbjct: 163 EYSMAQETGPPHKREFTVTCRIEAFVE-TGMGTSKKLAKRNAAEKLLRK 210 >gi|321457594|gb|EFX68677.1| hypothetical protein DAPPUDRAFT_329838 [Daphnia pulex] Length = 291 Score = 82.8 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 39/183 (21%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E + Y ++ +L +A TH + ++Y+RLE +GD LG L + F Sbjct: 83 SLAKFENILHYTSNDKEVLLEAFTHG--NSMKSQNYQRLELIGDAALGFLSALNFFIKSL 140 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110 + G+++ ++ V +T A + ++ + L K + F Sbjct: 141 THTSGDITKLRSACVCNDTFGVWAAKYGFHEHVQNLPPILLKQLNDFLEVVERENFTFAP 200 Query: 111 -----------------MTSIQADVVESLIAALYLDGGIE------VAGTFVDKYWKQRA 147 + S ADV E++ A+ +D + V F+ + Sbjct: 201 FERELAANGQIMATQVAIPSFLADVFEAVEGAIIIDANLSFETLERVYARFMTPVYDSPP 260 Query: 148 LKS 150 L Sbjct: 261 LSP 263 >gi|196000070|ref|XP_002109903.1| hypothetical protein TRIADDRAFT_20536 [Trichoplax adhaerens] gi|190588027|gb|EDV28069.1| hypothetical protein TRIADDRAFT_20536 [Trichoplax adhaerens] Length = 190 Score = 82.8 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + E+ IG F + LL KA TH S ++ Y+RLEFLGD IL ++++ ++ F Sbjct: 120 LTDFEESIGVEFKHIRLLAKAFTHPSAGLNHLTIGDYQRLEFLGDAILSYMLASHVYRQF 179 Query: 64 DSAKEGELSVR 74 +EG LSVR Sbjct: 180 PHYREGHLSVR 190 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 3/103 (2%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+LSV ++LV+ + ++ ++L L F+ S + K+ + A+ VE+ Sbjct: 1 MFPDLSEGDLSVYRSALVNNKQLGRLGKKLKLDEFLAYSHEALKNNNLDRS--IANGVEA 58 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT-ELQE 163 L A+YL+ G++ K + + T LQE Sbjct: 59 LFGAMYLENGLDRVREIFGKLTFDDDSELMGTWMNLVTHPLQE 101 >gi|321259818|ref|XP_003194629.1| hypothetical protein CGB_F1490W [Cryptococcus gattii WM276] gi|317461101|gb|ADV22842.1| Hypothetical Protein CGB_F1490W [Cryptococcus gattii WM276] Length = 433 Score = 82.8 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 95/268 (35%), Gaps = 70/268 (26%) Query: 19 NRSLLEKALTHSSISHSYQE-----------SYERLEFLGDRILGLLISTLLFNHFDSAK 67 +R LL + TH+S + ++ E+LE +GD +LG +++ LL + + + Sbjct: 170 DRELLRQVFTHTSYVGARKQSALFDKEAFHHDNEKLEHVGDALLGCIVTCLLHDLYPNLN 229 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL- 126 G + V +T SQ++R + + + ++ T A++ E+ +A L Sbjct: 230 PGNATEMKAICVCNQTLSQLSRRYKMPERLITDVNA-TEILKNGTKTTANIFEAYVAGLH 288 Query: 127 --YL--------DGG--------------------IEVAGTFVDKYWKQR--------AL 148 YL DGG E +V Y K+ A+ Sbjct: 289 YSYLKHGNTKDVDGGDGPKTHGQGLEHLQEWLRPLFEPIAEWVLGYMKKEQERLEAETAV 348 Query: 149 KSGKFRRD---------AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---S 196 K+G D K L E ++ P Y G D + +V Sbjct: 349 KAGSMDTDLDDLANGASGK--LNELFISRGAGMPVY-TYEPWGVD---MWKAIVIARNRD 402 Query: 197 GLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 G + K+ A VAA +VL + Sbjct: 403 GKEWQGEATRTKKKQAATVAAYKVLMQL 430 >gi|238567352|ref|XP_002386225.1| hypothetical protein MPER_15614 [Moniliophthora perniciosa FA553] gi|215437540|gb|EEB87155.1| hypothetical protein MPER_15614 [Moniliophthora perniciosa FA553] Length = 116 Score = 82.8 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 2/93 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFN 61 + + +E IG+ F + LL +ALTH+S SYER+EFLGD +L ++++ L+ Sbjct: 2 PEQVNYVETIIGHTFKRKLLLVEALTHASHQQDLGTVSYERMEFLGDAVLDMIVNDYLYR 61 Query: 62 HF-DSAKEGELSVRFNSLVSAETCSQVARELDL 93 G + +R ++V+ + + + L Sbjct: 62 APGKEYSPGHIYLRKVAVVNGHILAFICLKASL 94 >gi|134077181|emb|CAK45522.1| unnamed protein product [Aspergillus niger] Length = 371 Score = 82.8 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 82/260 (31%), Gaps = 45/260 (17%) Query: 2 SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + + + L R+ Y + L L ++L +S + + + E L LG +L S L Sbjct: 81 ESAKLAALHARL-YLPSRLPLETLARSLVDASADPNPKFNNESLATLGHDLLTHYTSEYL 139 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELD-----------------------LASF 96 + + + V +T + +ARE Sbjct: 140 ICTYPRLPLTVIFAAMYAYVGPKTLAAMAREWGVEPHEDQTHWRKSITSSVVYDNEFGDP 199 Query: 97 IRVSSDLRKDVCSFMTSIQADVVE--------SLIAALYLDGGIEVAGTFVDKYWKQRAL 148 ++ D + + + Q E +++ A+YL G A F ++++ R L Sbjct: 200 VKGPKDPSEQSKQDVQNTQGVTAEQANATFVRAVMGAIYLHAGRPAAKRFFEQHFLSRHL 259 Query: 149 KSGKFR------RDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPA 201 RD L + P ++ +G P F V + Sbjct: 260 NISDLFNFSQPARD----LARLCARENFEQPVARIISETGRKSRHPVFVVGIYSGQDKLG 315 Query: 202 QGMDCSKRAAEQVAAAEVLK 221 +G S A AA LK Sbjct: 316 EGAGASLLEARSRAAVAALK 335 >gi|56418259|gb|AAV91073.1| RNase III [Grouper iridovirus] Length = 375 Score = 82.4 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 79/225 (35%), Gaps = 24/225 (10%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 EK + + R L K T S+ +YE LE +GD + G N F Sbjct: 15 EKYMPFVLRRRDLWAKVFTPKSV--DPVNNYEALEIVGDGLAGCFFPIYFINRFPQLNSA 72 Query: 70 E----LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 E ++ + S ++ + +A L ++ +D S + DV E+ + A Sbjct: 73 EGVKLVARLKINYASRKSFAAIAGSLGFWQHVKKPTDTVITPTS-KEILLEDVFEAFLGA 131 Query: 126 LY--LDG-------GIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEY 175 + +D G+ V F+ + + + DAKT L+E K + Sbjct: 132 ISTAVDHHFGIPALGVAVVYDFLKAVFDKIDISLNYVDLFDAKTRLKELIDVKKSELGD- 190 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + G + F + K+ E+ AAA L Sbjct: 191 -LRYVHGNNITQIF-----LGERLVGSATGPIKKDREKDAAARAL 229 >gi|58268964|ref|XP_571638.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|134112802|ref|XP_774944.1| hypothetical protein CNBF1090 [Cryptococcus neoformans var. neoformans B-3501A] gi|50257592|gb|EAL20297.1| hypothetical protein CNBF1090 [Cryptococcus neoformans var. neoformans B-3501A] gi|57227873|gb|AAW44331.1| expressed protein [Cryptococcus neoformans var. neoformans JEC21] Length = 418 Score = 82.4 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 95/268 (35%), Gaps = 70/268 (26%) Query: 19 NRSLLEKALTHSSISHSYQE-----------SYERLEFLGDRILGLLISTLLFNHFDSAK 67 +R LL + TH+S + ++ E+LE +GD +LG +++ LL + + + Sbjct: 155 DRELLRQVFTHTSYVGARKQSALFDKEAFHHDNEKLEHVGDALLGCIVTCLLHDLYPNLN 214 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL- 126 G + V +T SQ++R + + + ++ T A++ E+ +A L Sbjct: 215 PGNATEMKAICVCNQTLSQLSRRYKMPERLITDVNA-TEILKNGTKTTANIFEAYVAGLH 273 Query: 127 --YL--------DGG--------------------IEVAGTFVDKYWKQR--------AL 148 YL DGG E +V Y K+ A+ Sbjct: 274 YSYLKHGNTKDVDGGDGPKTHGQGLEHLQGWLRPLFEPIAEWVLGYMKKEQERLEAETAV 333 Query: 149 KSGKFRRD---------AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---S 196 K+G D K L E ++ P Y G D + +V Sbjct: 334 KAGLMDTDLDDLANGASGK--LNELFISRGAGMPVY-TYEPRGVD---MWKAIVIARNRD 387 Query: 197 GLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 G + K+ A VAA ++L + Sbjct: 388 GKEWQGEATRTKKKQAATVAAYKILMQL 415 >gi|330982803|gb|EGH80906.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 77 Score = 82.4 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 +D KT LQE+ ++ P Y+V G H F V EI+ L ++G S+R AEQ Sbjct: 1 KDPKTRLQEFLQSRACELPRYEVVDIQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 60 >gi|145523894|ref|XP_001447780.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124415302|emb|CAK80383.1| unnamed protein product [Paramecium tetraurelia] Length = 357 Score = 82.4 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 94/237 (39%), Gaps = 33/237 (13%) Query: 15 YAFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNH-FD 64 ++F N + L +ALT+ YQ + E +G IL S L + Sbjct: 48 FSFQNTNTLAQALTNKIHELEYQSKKGTKYPFGNNEDFVGIGQMILEFFFSDYLIQRGYP 107 Query: 65 SA-----KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + K +L + L+S + +A + + ++V + + I A+ + Sbjct: 108 NKETQIKKSSDLVLLRQRLLSERNLADIALSYKIDNIVQVGNQINL---KKNPKILAETL 164 Query: 120 ESLIAALYLDGGI------EVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVT 172 +S+IAA Y D G EV + + + +A+ + +++ K+ E+ + + Sbjct: 165 KSIIAAQYYDSGYDLDHLREVVQPILKQVLDKGQAVPLVELKQNPKSAFLEFVNGCTNLK 224 Query: 173 PEYKVTFRSGPDHDP------RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P KV+ D + V +E++ L + +KR EQ+ + LKR Sbjct: 225 P--KVSVEWKKDSSQNGNPINIYQVQLELNNLLLIKREGVNKRNTEQLVYRDALKRL 279 >gi|196007068|ref|XP_002113400.1| hypothetical protein TRIADDRAFT_57522 [Trichoplax adhaerens] gi|190583804|gb|EDV23874.1| hypothetical protein TRIADDRAFT_57522 [Trichoplax adhaerens] Length = 213 Score = 82.4 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 70/162 (43%), Gaps = 14/162 (8%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLISTL 58 + ++KR+GY N +LL +ALT S ++ + + +RL+++G + I Sbjct: 20 VDIENMQKRLGYHIKNINLLLQALTRQSAIRQGIHYASKSNNQRLQWVGSNMFHSGIVYK 79 Query: 59 LFNHFDS---AKEGELSVRFNSLVSAETC-SQVARELDLASFIRVSSDLRKDVCSFMTSI 114 L+ + + L+ ++ S +++ + + LAS + SD I Sbjct: 80 LYEKYANNSYISTDYLNKVAINITSNMALVAEIGKRIGLASCVFRGSDEEIITSE----I 135 Query: 115 QADVVESLIAALYL-DGGIEVAGTFVDKYWKQRALKSGKFRR 155 A +++ ++ L DGG + ++++WK + + Sbjct: 136 LAHTFLAILGSITLDDGGQKAVHDVIERHWKWFLDNPEESFK 177 >gi|109287979|ref|YP_654673.1| hypothetical protein MIV101R [Invertebrate iridescent virus 3] gi|123868010|sp|Q196V9|RNC_IIV3 RecName: Full=Putative ribonuclease 3 gi|106073602|gb|ABF82131.1| hypothetical protein MIV101R [Aedes taeniorhynchus iridescent virus] Length = 333 Score = 82.4 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 82/224 (36%), Gaps = 33/224 (14%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE-----LSVRFN 76 A T SS ++ +YE E +GD +G I + F + ++ Sbjct: 99 YFNMAFT-SSSANELN-NYELFEQMGDSTIGKFIVWSSYEKFPQLRGKPEAVEIVARMKI 156 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL------YLDG 130 +L S + SQ+A +L + +FI + + R + DV E+LI + D Sbjct: 157 NLGSKDNLSQIAEDLGMWTFISATEEARH---RLKKKLLEDVFEALIGVTEYIIYEFTDT 213 Query: 131 GI-------EVAGTFVDKYWKQRALKSG-KFRRDAKTEL-----QEWAHAKFGVTPEYKV 177 ++ + + K + LK D+K L Q K G+ P Y+ Sbjct: 214 NYSQPGLAYQLVYSLLLKLFDPYILKIDYNTLVDSKNRLKGVFDQYK--DKLGLQPVYQS 271 Query: 178 TFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220 D + F V +G +G K+ AE+ A+ + Sbjct: 272 ERIVKNDKN-VFLSKVYDGNGNFLGEGTAPLKKEAEKKASEVAI 314 >gi|269114857|ref|YP_003302620.1| hypothetical protein MHO_0830 [Mycoplasma hominis] gi|268322482|emb|CAX37217.1| Hypothetical protein, putative Ribonuclease III [Mycoplasma hominis ATCC 23114] Length = 219 Score = 82.0 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 78/182 (42%), Gaps = 29/182 (15%) Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + E + + N +VS +T ++ +L A ++ + + +++ + S++AD+ E++I Sbjct: 29 NKNESDFTDLKNQIVSNKTLAKKINKLGFAKYLVLGDNDKRNNVANQDSVKADLFEAIIG 88 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD----------AK-----TELQEWAHAKF 169 A+ +D G ++ K + L F +D K L+E A Sbjct: 89 AIAIDSGWDIKR---LKNIIIKMLDIEHFFKDVDCREKRPDKFKLENAINTLKELAERGE 145 Query: 170 GVTPEYKVTFRSGPDHD--PRFTVVVEIS-------GL--APAQGMDCSKRAAEQVAAAE 218 P Y+++ + D++ + ++ GL +G SK+ A+++AA Sbjct: 146 CSMPIYQISEKPIIDNNGKQWWHCRCNVNFRNLQWMGLWTKYTEGYGTSKKLAKKMAAYI 205 Query: 219 VL 220 VL Sbjct: 206 VL 207 >gi|116205049|ref|XP_001228335.1| hypothetical protein CHGG_10408 [Chaetomium globosum CBS 148.51] gi|88176536|gb|EAQ84004.1| hypothetical protein CHGG_10408 [Chaetomium globosum CBS 148.51] Length = 1227 Score = 81.7 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 25/168 (14%) Query: 9 LEKRI---GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE R+ G + SL+ A+T +S + YER+EFLGD IL + + Sbjct: 934 LESRLEQTGIT--DLSLIVTAIT-ASAARG-PTDYERIEFLGDSILKFCTTINCSATYLK 989 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------SSDLRKDV 107 EG LS + +VS + A + L +I + + Sbjct: 990 FPEGCLSPLKDKIVSNSRLFRAAVDFGLDRYIIHKAFTLHKWRPTYVEDLIENPPSATET 1049 Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 T I ADVVE+LI ++ GGI A + + A S ++ R Sbjct: 1050 RRISTKIIADVVEALIGTAFVSGGISKALACMSLFLPDVAWNSIEYGR 1097 Score = 77.8 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 3/80 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE +GY F ++LL +A+TH S + + S +RLEFLGD IL ++ LF D A Sbjct: 1116 QLESLVGYTFTKKALLVEAMTHPSCNGPGIRASLDRLEFLGDAILDYVVVNKLFAISDPA 1175 Query: 67 K--EGELSVRFNSLVSAETC 84 L + +LV+A+ Sbjct: 1176 PLENSSLHLLRTALVNADIL 1195 >gi|196229194|ref|ZP_03128059.1| dsRNA-specific ribonuclease [Chthoniobacter flavus Ellin428] gi|196226426|gb|EDY20931.1| dsRNA-specific ribonuclease [Chthoniobacter flavus Ellin428] Length = 69 Score = 81.7 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 3/64 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE+RI Y F N LL +ALTH S+ H + +RLEFLGD +L L+ + LF+ F Sbjct: 4 LEQRIKYKFRNSLLLAEALTHPSLGHETQRHHFDNQRLEFLGDAVLQLIFTEYLFDQFPR 63 Query: 66 AKEG 69 + G Sbjct: 64 LQRG 67 >gi|171689324|ref|XP_001909602.1| hypothetical protein [Podospora anserina S mat+] gi|170944624|emb|CAP70735.1| unnamed protein product [Podospora anserina S mat+] Length = 1406 Score = 81.7 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 6/93 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LEK IGY F +SLL +A+TH S + + S +RLEFLGD IL L+ LF+ + Sbjct: 1080 LEKLIGYTFKKKSLLIEAMTHPSFNVQDTRASLDRLEFLGDAILDYLVVESLFSLREPLT 1139 Query: 68 -----EGELSVRFNSLVSAETCSQVARELDLAS 95 +L + +LV+A+ + E + Sbjct: 1140 GLPLENSKLHLLRTALVNADILGFLVMEWAIEE 1172 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 55/148 (37%), Gaps = 32/148 (21%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 L+ A+T S S YER+EFLGD IL + LS + +VS Sbjct: 912 DLVVTAITASGARRSI--DYERIEFLGDSILKFCTTINCSAQCF------LSASKDKIVS 963 Query: 81 AETCSQVARELDLASFIRV-----------------------SSDLRKDVCSFMTSIQAD 117 + A + LA +I SSD K T AD Sbjct: 964 NYRLCKAAIDFGLARYIINTAYTTDKWRPVFVEDYLERTDNPSSDGPKTR-EMSTKTLAD 1022 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQ 145 VVE+LI A ++ GGI A + + + Sbjct: 1023 VVEALIGASHISGGINKALACISLFLPE 1050 Score = 38.9 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 14/101 (13%) Query: 113 SIQADVVESLIAALYLDGG-IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHA 167 DV ESL+ A+++D G +E +++ +R ++ G K EL A Sbjct: 1268 KFYGDVFESLMGAVWVDSGDLEECRGLMERIGIMGLMERLVREGVHCLHPKEELGLLAAG 1327 Query: 168 KFGVTPEYKVTF-RSGPDHDPRFTVV-----VEISGLAPAQ 202 + EY+V G V + G + Sbjct: 1328 R---AVEYRVEENEEGQWECAVVWAETGEEVVRVGGARKGE 1365 >gi|289614471|emb|CBI58755.1| unnamed protein product [Sordaria macrospora] Length = 1365 Score = 81.7 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 4/91 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNH 62 + LEK +GYAF +SLL +A+TH S YERLEFLGD IL +++ L Sbjct: 997 QLEPLEKAMGYAFTKKSLLIEAMTHPSCPGLGDNDSCYERLEFLGDAILDVIVVKRLMAE 1056 Query: 63 --FDSAKEGELSVRFNSLVSAETCSQVAREL 91 + ++ +S+V+A+ + +A E Sbjct: 1057 TGPNELAHNDMHEYLSSVVTADIMAFLAMEW 1087 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 64/159 (40%), Gaps = 22/159 (13%) Query: 1 MSALRYSTLEKRIG-YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 MS + + R+G N L+ ALT SI +YERLEFLGD IL Sbjct: 804 MSLVAADLMYNRLGCLELDNLLLVTTALT--SIGSRAPTNYERLEFLGDTILKFCACLTA 861 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT------- 112 F + E LS +SLV+ + + + L +I S +K F+ Sbjct: 862 SALFPNHHERLLSQWKDSLVNNVRLCRASIDFGLDEYIIHSMASKKWRPKFVENYLDDSK 921 Query: 113 ------------SIQADVVESLIAALYLDGGIEVAGTFV 139 + ADV+ESLI A Y+ G + A + Sbjct: 922 SPKSAETREMSSKMVADVIESLIGATYMCGDMSKALECI 960 >gi|312221294|emb|CBY01234.1| hypothetical protein [Leptosphaeria maculans] Length = 207 Score = 81.7 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 10/144 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTL 58 + S E+ I Y ++ L AL S S+ L LGD + ++ Sbjct: 60 KVSQCEQIITYTAKSKYHLLNALNASGCLISHNNTTYSIPHNSGLAVLGDARMAGVLCKW 119 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 + A +G+ + + +Q+ RE L I +S + A + Sbjct: 120 WWGKSPKAHKGQWTQIRHDKCGNGFLAQLGREKGLHECIILSPGAIVV----SDKMVATL 175 Query: 119 VESLIAALYLDGGIEVAGTFVDKY 142 +E+L A+YLDGG E + K Sbjct: 176 IEALCGAIYLDGGEEELERVMRKL 199 >gi|121807816|sp|Q2VF18|DCL2_CRYPA RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease DCL-2; Includes: RecName: Full=ATP-dependent helicase DCL-2 gi|77632776|gb|ABB00357.1| dicer-like protein 2 [Cryphonectria parasitica] Length = 1451 Score = 81.3 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFN 61 LE+ I Y+F ++LL +A+TH S + Y+RLEF+GD IL +I +F Sbjct: 1150 PADLQLLEQLIEYSFCEKALLVEAVTHPSYNVSGTVACYDRLEFIGDAILDYIIVEEVFA 1209 Query: 62 HFDSAKEGELSVRFNSLVSAETC 84 + + ++ + +LV+A+ Sbjct: 1210 LEPALENWQMHLLRTALVNADIL 1232 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 20/159 (12%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 +N S+L +A+ S E+YER+EFLGD IL I+ L EG LS+ Sbjct: 980 RISNVSMLVEAICAKSA--RTPENYERIEFLGDSILKTCITVNLAATKLHLPEGILSLMK 1037 Query: 76 NSLVSAETCSQVARELDLASFI----RVSSD--------------LRKDVCSFMTSIQAD 117 + LVS + A + +L F+ V+ + AD Sbjct: 1038 DRLVSNARLCRAACDAELDQFLVTQQLVTKGWQPPYMSDLAKQDQEPESKRILSPKTLAD 1097 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156 VVE+LI ++DGG+ A + + + + RD Sbjct: 1098 VVEALIGVSFVDGGLPKALECIRLFIPESQPRPFSEVRD 1136 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 18/124 (14%) Query: 113 SIQADVVESLIAALYLDG--GIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAH 166 +D E+L+ A+++D G + FV + + +R L+ K EL A Sbjct: 1333 KFYSDFFEALVGAIWVDAGPGFDACRAFVARSGVLPYLKRLLRDQVHVLHPKEELGRLA- 1391 Query: 167 AKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDC-----SK-RAAEQVAAAEV 219 EY V D D + V + G C S+ +AA Q A E+ Sbjct: 1392 --GRERVEYVVKETLKDDGDGKEWACEVRVGGRYVTDVTGCLFKEESRVKAATQ--ACEI 1447 Query: 220 LKRE 223 LKR+ Sbjct: 1448 LKRK 1451 >gi|47225094|emb|CAF98721.1| unnamed protein product [Tetraodon nigroviridis] Length = 1041 Score = 81.3 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 44/88 (50%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 920 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 979 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAA 125 + S + A+ E+LI Sbjct: 980 LYAHGPDLCRESDLRHAMANCFEALIGE 1007 >gi|67925688|ref|ZP_00519002.1| Ribonuclease III [Crocosphaera watsonii WH 8501] gi|67852471|gb|EAM47916.1| Ribonuclease III [Crocosphaera watsonii WH 8501] Length = 328 Score = 81.3 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 72/155 (46%), Gaps = 7/155 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFNHF 63 S ++++I + F N LL +L+ S + +RLE LG+ +L L+I L++HF Sbjct: 6 SLVQEKISFNFKNTDLLFLSLSDPSYGKQINQPDSDNQRLESLGENLLALIIIDYLYHHF 65 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSFMTSI-QADVVES 121 +++ + L+ E + + L L + + + + T+ +++ Sbjct: 66 PYLTLSKMTALQDKLLDKEKLTNLWFSLGLGESYPFLDVNQERHRLRVKTTNPFEKSLKA 125 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156 L+AA+++D G + + +K+ L K ++D Sbjct: 126 LVAAIHVDRGFSHSYNWFNKHLIAPLL--AKHQKD 158 Score = 37.0 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 17/138 (12%) Query: 33 SHSYQESYER------LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86 + +++ ER L LG +L + L+ K G+L +L S + ++ Sbjct: 153 AKHQKDNLERVNPDKQLNILGSTLLKAVTFDYLYTLLPYVKPGQLKKLSKTLTSKKQQTE 212 Query: 87 VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV---DKYW 143 ++ V+++ + + + I SL A+++ E T K++ Sbjct: 213 YLKK--------VTTEDWEIITTEQDKISKKSFPSLFGAMFIHFDHENPKTRYRNSKKWF 264 Query: 144 KQRALKSGKFRRDAKTEL 161 K+ + + DA + L Sbjct: 265 KENFIDEDEVLYDAISSL 282 >gi|113476425|ref|YP_722486.1| ribonuclease III [Trichodesmium erythraeum IMS101] gi|110167473|gb|ABG52013.1| ribonuclease III [Trichodesmium erythraeum IMS101] Length = 209 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 13/147 (8%) Query: 16 AFANRSLLEKALTHSSISHSY------QESYERLEF-----LGDRILGLLISTLLFNHFD 64 F + LLE ALTH + + Q+ + LE LG + +IS L +F Sbjct: 17 KFKHPELLEIALTHPNHIYDRTNIIRPQQKQQVLEHQGLANLGYVVFSRVISKYLSKNFS 76 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S + L + + LVS + S+ A++L L F ++ + S + A + E+LI Sbjct: 77 SLGKATLIIIESDLVSIKMLSEFAKDLKLRQFSQLGKSYKWKHKSEKNKMLAQMFEALIG 136 Query: 125 ALYL--DGGIEVAGTFVDKYWKQRALK 149 +YL D +E ++ +++ A+ Sbjct: 137 VIYLEFDKDLERTSHWLVEHFIAEAVN 163 >gi|82268346|sp|Q4SS66|TRBP2_TETNG RecName: Full=RISC-loading complex subunit tarbp2 gi|47222849|emb|CAF96516.1| unnamed protein product [Tetraodon nigroviridis] Length = 345 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 140 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 198 Query: 216 AAEVLKR 222 AA++L R Sbjct: 199 AAKMLSR 205 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G G S Sbjct: 31 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVAV-GEINCTGQGPS 79 >gi|312380139|gb|EFR26223.1| hypothetical protein AND_07871 [Anopheles darlingi] Length = 328 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 80/237 (33%), Gaps = 35/237 (14%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55 KR+ F S+L++A TH S ++ L GD ++ + Sbjct: 68 KRLQENFE-PSVLQQAFTHQSFIEQEKQKQAAVGIDEPVLGVHDNRELIAQGDSLIQQYV 126 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 L + + +L S + ++ L I +++D D ++ Sbjct: 127 EAFLLKALPRLPQQFVGSIQKALTSEAQLAHISAHLGTKD-IILAADFPID-----DTLL 180 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHAKFGV 171 A +++++AAL G E FV + + F DA L+E+ + Sbjct: 181 ASTLKAIVAALQRSSGDERCFLFVRDFLCTTLNQRDPFEYLHITDALGTLREYCQERKLA 240 Query: 172 TPEYKVTFRSG-----PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++ G H V + G + A Q AA + L++ Sbjct: 241 EPEPRLIGTVGKNTLLAAHA----VGIYCDQKLLGTGYGEDQTIASQEAARDCLRKL 293 >gi|289526478|pdb|2KHX|A Chain A, Drosha Double-Stranded Rna Binding Motif Length = 85 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 5/73 (6%) Query: 155 RDAKTELQEWA-----HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 D K++LQ+ K P YK GP H +TV V G G S + Sbjct: 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQ 60 Query: 210 AAEQVAAAEVLKR 222 AE AA + L++ Sbjct: 61 QAEMGAAMDALEK 73 >gi|125570782|gb|EAZ12297.1| hypothetical protein OsJ_02188 [Oryza sativa Japonica Group] Length = 234 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 17/142 (11%) Query: 40 YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR---------- 89 ++RLEFLGD LGL +T+ + +G+L+V ++ VS + ++VA Sbjct: 39 HQRLEFLGDAALGLAFATIFYRDDPGLDQGDLTVLRSANVSTQKLARVAVRRRLYPLLRR 98 Query: 90 ------ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV-AGTFVDKY 142 + +++ F + + AD+VE+++ A+YLD +++ V K Sbjct: 99 YNCAPQDHEVSRFTKSVEGPYSGDPIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKL 158 Query: 143 WKQRALKSGKFRRDAKTELQEW 164 + + D ++ L E Sbjct: 159 LCEPIITKKALLEDPESMLNEL 180 >gi|229891738|sp|Q5BJ52|TRBP2_XENTR RecName: Full=RISC-loading complex subunit tarbp2 Length = 351 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + L + + + LQE K PEY VT SGP H FT+ + G Sbjct: 139 KPPLSAQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFLEIGS 197 Query: 205 DCSKRAAEQVAAAEVL 220 SK+ A++ AAA++L Sbjct: 198 GTSKKLAKRNAAAKML 213 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + + G S Sbjct: 30 PISLLQEYG-TRVGKTPVYDLLKAEGQAHQPNFTFRVSVGDIN-CTGQGPS 78 >gi|229891737|sp|Q6GPZ1|TRBP2_XENLA RecName: Full=RISC-loading complex subunit tarbp2 Length = 351 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + L + + + LQE K PEY VT SGP H FT+ + G Sbjct: 139 KPPLSAQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFLEIGS 197 Query: 205 DCSKRAAEQVAAAEVL 220 SK+ A++ AAA++L Sbjct: 198 GTSKKLAKRNAAAKML 213 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + + G S Sbjct: 30 PISLLQEYG-TRVGKTPVYDLLKAEGQAHQPNFTFRVSVGDIN-CTGQGPS 78 >gi|71895927|ref|NP_001025646.1| RISC-loading complex subunit tarbp2 [Xenopus (Silurana) tropicalis] gi|60550973|gb|AAH91619.1| TAR (HIV-1) RNA binding protein 2 [Xenopus (Silurana) tropicalis] Length = 331 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + L + + + LQE K PEY VT SGP H FT+ + G Sbjct: 119 KPPLSAQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFLEIGS 177 Query: 205 DCSKRAAEQVAAAEVL 220 SK+ A++ AAA++L Sbjct: 178 GTSKKLAKRNAAAKML 193 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + + G S Sbjct: 10 PISLLQEYG-TRVGKTPVYDLLKAEGQAHQPNFTFRVSVGDIN-CTGQGPS 58 >gi|148232429|ref|NP_001085574.1| RISC-loading complex subunit tarbp2 [Xenopus laevis] gi|49115615|gb|AAH72963.1| MGC82499 protein [Xenopus laevis] Length = 331 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + L + + + LQE K PEY VT SGP H FT+ + G Sbjct: 119 KPPLSAQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFLEIGS 177 Query: 205 DCSKRAAEQVAAAEVL 220 SK+ A++ AAA++L Sbjct: 178 GTSKKLAKRNAAAKML 193 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + + G S Sbjct: 10 PISLLQEYG-TRVGKTPVYDLLKAEGQAHQPNFTFRVSVGDIN-CTGQGPS 58 >gi|317418804|emb|CBN80842.1| RISC-loading complex subunit tarbp2 [Dicentrarchus labrax] Length = 345 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 140 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFVEIGSGTSKKLAKRNA 198 Query: 216 AAEVLKR 222 AA++L R Sbjct: 199 AAKMLSR 205 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G G S Sbjct: 31 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVSV-GEISCTGQGPS 79 >gi|90704799|dbj|BAE92294.1| similarity to ribonuclease III [Cryptomeria japonica] Length = 191 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 10/148 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L+ +I Y F +++LL A+TH+S S ++ L LG I+ IS + + Sbjct: 39 IKALQTKIRYQFKDQTLLILAITHASYSF---DNNGALNVLGYNIIQAAISLHYVLNNSA 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 G+L + + L + S+ A +L L I+V+ + SI +L A Sbjct: 96 IGSGDLHSKISELSNCTVLSKDAFDLQLHDLIKVAPK----INPKKQSILCGCYRALFGA 151 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF 153 + D ++VA +K+ +R L + Sbjct: 152 IGADANLDVAK---EKFLIRRKLNAASI 176 >gi|41053389|ref|NP_956291.1| RISC-loading complex subunit tarbp2 [Danio rerio] gi|82240186|sp|Q7SXR1|TRBP2_DANRE RecName: Full=RISC-loading complex subunit tarbp2 gi|33311802|gb|AAH55390.1| TAR (HIV) RNA binding protein 2 [Danio rerio] Length = 346 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 139 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFVEIGSGTSKKLAKRNA 197 Query: 216 AAEVLKR 222 AA++L R Sbjct: 198 AAKMLSR 204 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + + G S Sbjct: 31 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVSVGDIN-CTGHGPS 79 >gi|311255463|ref|XP_003126242.1| PREDICTED: RISC-loading complex subunit TARBP2-like [Sus scrofa] Length = 366 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 206 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 207 GTSKKLAKRNAAAKMLLR 224 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 31 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79 >gi|296211842|ref|XP_002752582.1| PREDICTED: RISC-loading complex subunit TARBP2-like isoform 2 [Callithrix jacchus] gi|296211844|ref|XP_002752583.1| PREDICTED: RISC-loading complex subunit TARBP2-like isoform 3 [Callithrix jacchus] Length = 345 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 127 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 185 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 186 GTSKKLAKRNAAAKMLLR 203 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 10 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 58 >gi|296211840|ref|XP_002752581.1| PREDICTED: RISC-loading complex subunit TARBP2-like isoform 1 [Callithrix jacchus] Length = 366 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 206 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 207 GTSKKLAKRNAAAKMLLR 224 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 31 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79 >gi|149714845|ref|XP_001504584.1| PREDICTED: similar to TAR RNA binding protein 2 isoform 1 [Equus caballus] Length = 366 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 206 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 207 GTSKKLAKRNAAAKMLLR 224 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 31 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79 >gi|149714848|ref|XP_001504588.1| PREDICTED: similar to TAR RNA binding protein 2 isoform 3 [Equus caballus] gi|149714851|ref|XP_001504586.1| PREDICTED: similar to TAR RNA binding protein 2 isoform 2 [Equus caballus] Length = 345 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 127 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 185 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 186 GTSKKLAKRNAAAKMLLR 203 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 10 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 58 >gi|119617124|gb|EAW96718.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_b [Homo sapiens] gi|119617125|gb|EAW96719.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_b [Homo sapiens] Length = 222 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 4 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 62 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 63 GTSKKLAKRNAAAKMLLR 80 >gi|113912024|gb|AAI22654.1| TAR (HIV-1) RNA binding protein 2 [Bos taurus] Length = 319 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 206 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 207 GTSKKLAKRNAAAKMLLR 224 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 31 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79 >gi|19743838|ref|NP_004169.3| RISC-loading complex subunit TARBP2 isoform b [Homo sapiens] gi|85068512|ref|NP_599151.2| RISC-loading complex subunit TARBP2 isoform b [Homo sapiens] gi|332839227|ref|XP_003313704.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 2 [Pan troglodytes] gi|332839229|ref|XP_003313705.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 3 [Pan troglodytes] gi|119617123|gb|EAW96717.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_a [Homo sapiens] Length = 345 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 127 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 185 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 186 GTSKKLAKRNAAAKMLLR 203 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 10 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 58 >gi|164448622|ref|NP_001069146.2| RISC-loading complex subunit TARBP2 [Bos taurus] gi|229891741|sp|Q0IIG6|TRBP2_BOVIN RecName: Full=RISC-loading complex subunit TARBP2 gi|296487914|gb|DAA30027.1| RISC-loading complex subunit TARBP2 [Bos taurus] Length = 366 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 206 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 207 GTSKKLAKRNAAAKMLLR 224 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 31 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79 >gi|30585201|gb|AAP36873.1| Homo sapiens TAR (HIV) RNA binding protein 2 [synthetic construct] gi|60653021|gb|AAX29205.1| TAR [synthetic construct] Length = 367 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 206 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 207 GTSKKLAKRNAAAKMLLR 224 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 31 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79 >gi|339909|gb|AAA36765.1| TAR RNA binding protein [Homo sapiens] Length = 345 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 127 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 185 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 186 GTSKKLAKRNAAAKMLLR 203 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 10 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 58 >gi|7412848|gb|AAB50581.2| TAR RNA binding protein 2 [Homo sapiens] Length = 366 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 206 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 207 GTSKKLAKRNAAAKMLLR 224 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 31 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79 >gi|19743840|ref|NP_599150.1| RISC-loading complex subunit TARBP2 isoform a [Homo sapiens] gi|332839225|ref|XP_003313703.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 1 [Pan troglodytes] gi|209572714|sp|Q15633|TRBP2_HUMAN RecName: Full=RISC-loading complex subunit TARBP2; AltName: Full=TAR RNA-binding protein 2; AltName: Full=Trans-activation-responsive RNA-binding protein gi|13543405|gb|AAH05860.1| TAR (HIV-1) RNA binding protein 2 [Homo sapiens] gi|30583119|gb|AAP35804.1| TAR (HIV) RNA binding protein 2 [Homo sapiens] gi|60656097|gb|AAX32612.1| TAR RNA binding protein 2 [synthetic construct] gi|119617126|gb|EAW96720.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_c [Homo sapiens] gi|123993747|gb|ABM84475.1| Tar (HIV-1) RNA binding protein 2 [synthetic construct] gi|123994511|gb|ABM84857.1| Tar (HIV-1) RNA binding protein 2 [synthetic construct] gi|208967915|dbj|BAG73796.1| TAR (HIV-1) RNA binding protein 2 [synthetic construct] Length = 366 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 206 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 207 GTSKKLAKRNAAAKMLLR 224 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 31 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79 >gi|107904|pir||A38430 trans-activation-responsive RNA-binding protein - human (fragment) Length = 363 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 145 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 203 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 204 GTSKKLAKRNAAAKMLLR 221 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 2/69 (2%) Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + K + + + + + LQE+ + G TP Y + G H P FT V + Sbjct: 10 IQKAPCPKQMLAANPGKTPISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD- 67 Query: 199 APAQGMDCS 207 G S Sbjct: 68 TSCTGQGPS 76 >gi|195995859|ref|XP_002107798.1| hypothetical protein TRIADDRAFT_51673 [Trichoplax adhaerens] gi|190588574|gb|EDV28596.1| hypothetical protein TRIADDRAFT_51673 [Trichoplax adhaerens] Length = 1418 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 73/201 (36%), Gaps = 46/201 (22%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH- 62 + E+ +GY F N L A THSS +YE+LEF+GD IL L+ LF Sbjct: 1220 EKLHKFEENLGYKFINIDYLILAFTHSSSEFGDSFNYEKLEFVGDSILNYLVIKYLFLAT 1279 Query: 63 ----------FDSAKEGELSVRFNSLVSAETC---SQVARELDLA------SFIRVSSDL 103 + A E+ + + S +E+ L + S Sbjct: 1280 DQDITRSKFFYGIAISNEVYGLLSYAYNFHHLFYQSPFVKEMILGFEKKTADLLEGGSIP 1339 Query: 104 RKDVCS------FMTSI---------QADVVESLIAALYLDGGIEVAGTF-----VDKYW 143 R F SI ADV ESL AA+Y D G ++ + + K + Sbjct: 1340 RNGNKHDWVYTIFSKSIDDDFSIPKELADVFESLAAAIYFDSGQNLSTVWNIYSNLLKPF 1399 Query: 144 KQRALKSGKFRRDAKTELQEW 164 + LK +++ QE Sbjct: 1400 LDKLLKDN--QKNF----QEL 1414 >gi|238497846|ref|XP_002380158.1| RNA helicase/RNAse III, putative [Aspergillus flavus NRRL3357] gi|220693432|gb|EED49777.1| RNA helicase/RNAse III, putative [Aspergillus flavus NRRL3357] Length = 1339 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 17/135 (12%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 FA+ + A+ S +Y+R EFLGD IL ++S LF + EG L+ Sbjct: 925 FADIQHVITAIMAPSA--QGVTNYQRYEFLGDSILKYIVSCQLFFQNLNWPEGFLTEGRT 982 Query: 77 SLVSAETCSQVARELDLASFIRVSS---------------DLRKDVCSFMTSIQADVVES 121 ++V ++ A + L SFI + + ADV+E+ Sbjct: 983 TIVQNPRLTRAALDAGLDSFIITKALTPRRWIAPLISTRVGAAPVKRQMSAKVLADVIEA 1042 Query: 122 LIAALYLDGGIEVAG 136 LI A YLDGG A Sbjct: 1043 LIGAAYLDGGHSKAQ 1057 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 81/245 (33%), Gaps = 74/245 (30%) Query: 44 EFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL------------ 91 EFLGD IL ++I ++F + + G++++ +++V+A E Sbjct: 1093 EFLGDAILDMVIVPIIFQYSNKISPGDMTLIKHAVVNANLLGFFCMEFSIEQDKTKVEKT 1152 Query: 92 --------------DLASFIRVSSDLRKD--------VCSFMTSIQ-------------- 115 +L F+R +S + I Sbjct: 1153 PDGRFAVKSETQHVELWRFMRFNSLDLQTSRDAALDRHRRLRNKILTSLYHGPSYPWQSL 1212 Query: 116 ---------ADVVESLIAALYLDGG--IEVAGTFVDKY----WKQRALKSGKFRRDAKTE 160 +D+VES++ A+Y+D G + F+++ + +R L G + Sbjct: 1213 SQLYADKFFSDIVESVLGAIYVDSGGDLSACERFLEQIGLLSYVRRVLLDGINVTHPRNI 1272 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG--LAPAQG--MDCSKRAAEQVAA 216 Q + +V+ G + V ++ + +G AE AA Sbjct: 1273 AQRLSKGDALFNLR-RVSDEKGRS---MYRCTVTMNDAQIVLVEGCQCGE---EAEVRAA 1325 Query: 217 AEVLK 221 E ++ Sbjct: 1326 NETIE 1330 >gi|70995776|ref|XP_752643.1| 60S ribosomal protein L3 [Aspergillus fumigatus Af293] gi|66850278|gb|EAL90605.1| 60S ribosomal protein L3 [Aspergillus fumigatus Af293] gi|159131396|gb|EDP56509.1| 60S ribosomal protein L3 [Aspergillus fumigatus A1163] Length = 363 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 49/252 (19%), Positives = 80/252 (31%), Gaps = 37/252 (14%) Query: 2 SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + + + L R+ Y + L L +AL +S + + E L LG +L S L Sbjct: 81 ESAKLAALHARL-YLPSRLPLETLARALVDASADPNPDFNNESLATLGHDLLTNYTSEHL 139 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELD---------------LASFIRVSSDLR 104 + + + V +T S +ARE ++ +D Sbjct: 140 ICTYPRLPLTVIFAAMYAYVGPKTLSAMAREWGVEMASITSRVVYDNEFGDPVKEVADSA 199 Query: 105 KDVCSFMTSIQADVVE--------SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-- 154 S Q E +++ A+YL G A F +++ R L + Sbjct: 200 AQAVSETHGAQGVTAEQASATFVRAVMGAIYLHAGRPAAKRFFEQHILSRHLNISELFNF 259 Query: 155 ----RDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKR 209 RD L + P K+ +G P F V + +G S Sbjct: 260 SQPARD----LTRLCARENFERPVAKIISETGRKSRHPVFVVGIYSGQDKLGEGAGASLM 315 Query: 210 AAEQVAAAEVLK 221 A AA LK Sbjct: 316 EARSRAAVAALK 327 >gi|159163844|pdb|2CPN|A Chain A, Solution Structure Of The Second Dsrbd Of Tar Rna-Binding Protein 2 Length = 89 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 17 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 75 Query: 216 AAEVLKR 222 AA++L R Sbjct: 76 AAKMLLR 82 >gi|224121666|ref|XP_002318642.1| predicted protein [Populus trichocarpa] gi|222859315|gb|EEE96862.1| predicted protein [Populus trichocarpa] Length = 179 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 8/122 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ +IGY F N L +A+THSS S QE+ + L LG ++ +S Sbjct: 40 LQNQIGYTFKNIGYLRRAMTHSSFS---QENNKALSILGSNVIDTSVSMYYLGKDIEISS 96 Query: 69 GELSVRFNSLVSAET-CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 +L+ + +T C+ L L +RVS ++ ++ A+ Sbjct: 97 KDLNRWISENAKVDTSCAVDGMRLGLHRVVRVSPKTNSTA----PTVVCSAFRAIFGAIA 152 Query: 128 LD 129 +D Sbjct: 153 ID 154 >gi|301775807|ref|XP_002923310.1| PREDICTED: RISC-loading complex subunit TARBP2-like [Ailuropoda melanoleuca] Length = 366 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFVEIGS 206 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 207 GTSKKLAKRNAAAKMLLR 224 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 31 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79 >gi|291389267|ref|XP_002711070.1| PREDICTED: TAR RNA binding protein 2 [Oryctolagus cuniculus] Length = 366 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFVEIGS 206 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 207 GTSKKLAKRNAAAKMLLR 224 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 31 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79 >gi|281341836|gb|EFB17420.1| hypothetical protein PANDA_012447 [Ailuropoda melanoleuca] Length = 350 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 132 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFVEIGS 190 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 191 GTSKKLAKRNAAAKMLLR 208 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 15 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 63 >gi|72157362|ref|XP_797998.1| PREDICTED: similar to MGC53736 protein [Strongylocentrotus purpuratus] gi|115963208|ref|XP_001187016.1| PREDICTED: similar to MGC53736 protein [Strongylocentrotus purpuratus] Length = 306 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE AK GVTP Y + G H P+FT+ +G G SK+ A+Q AA Sbjct: 7 PVSILQELC-AKKGVTPVYDTIGQEGASHQPKFTIRCT-AGDVVGNGQGPSKKVAKQSAA 64 Query: 217 AEVLKREGI 225 +VL++ I Sbjct: 65 EDVLQQLDI 73 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 149 KSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 G+ +D ELQE PEY+ SGP H+ RF + V + QG+D S Sbjct: 83 DEGRSLKDNPVGELQELVTCMGWRKPEYEALEESGPPHNRRFVISVSVD-KYKEQGVDQS 141 Query: 208 KRAAEQVAAAEVLK 221 KR A++ AA+ +L+ Sbjct: 142 KRLAKRAAASAMLE 155 >gi|321469997|gb|EFX80975.1| hypothetical protein DAPPUDRAFT_303691 [Daphnia pulex] Length = 355 Score = 79.7 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 80/235 (34%), Gaps = 26/235 (11%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI--------------SHSYQESYERLEFLGDRILGL 53 R+G F N + L ALTH S S+ ++ E L G ++ Sbjct: 81 AFSNRLGEKF-NEATLRTALTHKSYVERETARLSDIGVDSYLQIQNNEELAVAGGALISK 139 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 + L F E + + L S V + + L + S + Sbjct: 140 FTNGYLRAVFTRVPEELIMAMHDFLTSTSNLEIVGKHIGLGDLMLCSDFPCESE------ 193 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA----LKSGKFRRDAKTELQEWAHAKF 169 +++++AAL G E A FV + + D L + + Sbjct: 194 TYVKSLKAVVAALAESSGEERARIFVQDLVVTQLYGLDINELWNPADPVGNLTDILKREG 253 Query: 170 GVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE+++ SG + + V V A+G S A+++AA E LK+ Sbjct: 254 KAEPEFRLIKHSGQNSVLAVYYVGVYSDKNFIAEGAGESLEIAKEMAAREALKQL 308 >gi|302808147|ref|XP_002985768.1| hypothetical protein SELMODRAFT_122841 [Selaginella moellendorffii] gi|300146677|gb|EFJ13346.1| hypothetical protein SELMODRAFT_122841 [Selaginella moellendorffii] Length = 219 Score = 79.7 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 4/98 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 ++ L++++GY F N+ +L AL S H ++ RLEFLGD +L L++ L Sbjct: 69 LTDDDLKELQEKLGYQFRNKQVLRVAL---SF-HDDNFTFRRLEFLGDAVLDYLVTRHLV 124 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 F G + + ++ E S ++ +++ Sbjct: 125 RSFPDQSAGRHNTIKQATINKEHYSCISIRHGFHVYLQ 162 >gi|302771083|ref|XP_002968960.1| hypothetical protein SELMODRAFT_90770 [Selaginella moellendorffii] gi|300163465|gb|EFJ30076.1| hypothetical protein SELMODRAFT_90770 [Selaginella moellendorffii] Length = 128 Score = 79.7 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 7/124 (5%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 Y F + +LL+ ALTHSS S + L LG I+ + A + EL Sbjct: 2 YKFNDSTLLQDALTHSSYSRH---NNGPLHLLGVSIIRASVYKHYLAKNRDATKEELEAM 58 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 +SL S C++ A L L IR V + A +L A+ +DG + Sbjct: 59 SSSLSSTTACARRASGLGLDKLIR----ADAPVDRKSDKVLAVAFHALFGAIAMDGSADQ 114 Query: 135 AGTF 138 A + Sbjct: 115 AMSV 118 >gi|327263959|ref|XP_003216784.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Anolis carolinensis] Length = 383 Score = 79.7 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 179 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 237 Query: 216 AAEVLKR 222 AA++L R Sbjct: 238 AAKMLVR 244 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + ++ G S Sbjct: 82 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDIS-CTGQGPS 130 >gi|158254910|dbj|BAF83426.1| unnamed protein product [Homo sapiens] Length = 366 Score = 79.3 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K +PEY VT SGP H FT+ + G Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRSPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 206 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 207 GTSKKLAKRNAAAKMLLR 224 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 31 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79 >gi|320170569|gb|EFW47468.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 871 Score = 79.0 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 37/167 (22%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALT----HSSISHSYQESYERLEFLGDRILGLLISTLL 59 + +E +G F + L ALT H +I ++Y+ L+F+GD +L + L Sbjct: 702 EKLREVEAILGVRFNEPAWLAMALTADNSHPAIL-PVSKTYQGLDFVGDTVLKYSVQKFL 760 Query: 60 FNHFD------------SAKEGELSVRFNSLV------------SAETCSQVARELDLAS 95 + L+ N V + ++V L L Sbjct: 761 MHWSPADVKRVYGVDMTKTTGRFLTGHHNQPVPVLFEYLQGIIINNLHLTEVFGSLGLHK 820 Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 ++ F + AD++E++I A+++D G++ FV ++ Sbjct: 821 YVI--------GYRFHQKVLADLLEAIIGAIFVDQGLDAVQDFVIRH 859 >gi|309800534|ref|ZP_07694685.1| ribonuclease III [Streptococcus infantis SK1302] gi|308115845|gb|EFO53370.1| ribonuclease III [Streptococcus infantis SK1302] Length = 83 Score = 79.0 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 S L+ F ++SLLE A TH+S ++ ++ ERLEFLGD +L LLIS LF Sbjct: 6 SVLQDSFELVFTDKSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLFKK 65 Query: 63 FDSAK 67 + Sbjct: 66 YPKKT 70 >gi|50897085|dbj|BAD34723.1| Dicer-related RNase III protein Dcr2p [Tetrahymena thermophila] Length = 1838 Score = 79.0 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 25/141 (17%) Query: 34 HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 +Y +RLEFLGD +L L+I LFN F ++ GEL+ SLV +T + Sbjct: 1616 KNYNLCNQRLEFLGDAVLDLIIVEYLFNKFPNSDPGELTQMKTSLVQNKTLCLINLMKGF 1675 Query: 94 ASFI------------RVSSDLRKDVC--------SFMTSI---QADVVESLIAALYLDG 130 FI + +++ + ++ S+ DV+ESL+ A+++D Sbjct: 1676 YKFIIGSIQHNKEEIELLLNNVEMFMGDTSLMYDTTYNQSLIKTLGDVIESLVGAIFIDN 1735 Query: 131 G--IEVAGTFVDKYWKQRALK 149 E+ V + L+ Sbjct: 1736 NLDYEITKKIVMETLFAEILQ 1756 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 23 LEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 L K+LT + ++ + S ER EFLGD +L L ST ++ + E L V ++ Sbjct: 1309 LMKSLTSLEYAVNNKESSLERYEFLGDTVLKCLSSTQIYFEHPKSMEDHLHVHRTIIIQN 1368 Query: 82 ETCSQVARELDLASFIRVSSDL 103 +Q+A + + +I S Sbjct: 1369 RNLAQIAVKKKIFKYILSSKIE 1390 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 11/29 (37%), Positives = 17/29 (58%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI 32 ++ +E +GY F N +LL +A T SI Sbjct: 1528 VQLKEIESILGYTFQNINLLFQAFTLPSI 1556 >gi|321451187|gb|EFX62921.1| hypothetical protein DAPPUDRAFT_336204 [Daphnia pulex] Length = 158 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 2/107 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 E+ GY F + +L +AL + S S + +RLE +GD +LG+L+S LF Sbjct: 26 FEEIFGYKFKDEEMLHQALKRPTASLKSSVKKGDRLELVGDAVLGILVSIGLFRTITMYN 85 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTS 113 G+L+ ++L + + + + F+ + L +V F + Sbjct: 86 PGDLTRHRSALTCNDCFGVLTVKFGIHKFLLGLPPSLLHNVNEFAEN 132 >gi|146180696|ref|XP_001470932.1| conserved hypothetical protein [Tetrahymena thermophila] gi|146144409|gb|EDK31487.1| conserved hypothetical protein [Tetrahymena thermophila SB210] Length = 1822 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 25/141 (17%) Query: 34 HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 +Y +RLEFLGD +L L+I LFN F ++ GEL+ SLV +T + Sbjct: 1600 KNYNLCNQRLEFLGDAVLDLIIVEYLFNKFPNSDPGELTQMKTSLVQNKTLCLINLMKGF 1659 Query: 94 ASFI------------RVSSDLRKDVC--------SFMTSI---QADVVESLIAALYLDG 130 FI + +++ + ++ S+ DV+ESL+ A+++D Sbjct: 1660 YKFIIGSIQHNKEEIELLLNNVEMFMGDTSLMYDTTYNQSLIKTLGDVIESLVGAIFIDN 1719 Query: 131 G--IEVAGTFVDKYWKQRALK 149 E+ V + L+ Sbjct: 1720 NLDYEITKKIVMETLFAEILQ 1740 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 23 LEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 L K+LT + ++ + S ER EFLGD +L L ST ++ + E L V ++ Sbjct: 1424 LMKSLTSLEYAVNNKESSLERYEFLGDTVLKCLSSTQIYFEHPKSMEDHLHVHRTIIIQN 1483 Query: 82 ETCSQVARELDLASFIRVSSDL 103 +Q+A + + +I S Sbjct: 1484 RNLAQIAVKKKIFKYILSSKIE 1505 >gi|148672021|gb|EDL03968.1| TAR (HIV) RNA binding protein 2, isoform CRA_b [Mus musculus] Length = 277 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 99 QPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE-RFIEIGS 157 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 158 GTSKKLAKRNAAAKMLLR 175 >gi|166295185|ref|NP_033345.2| RISC-loading complex subunit TARBP2 [Mus musculus] gi|12805141|gb|AAH02028.1| TAR (HIV) RNA binding protein 2 [Mus musculus] gi|148672020|gb|EDL03967.1| TAR (HIV) RNA binding protein 2, isoform CRA_a [Mus musculus] Length = 365 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 147 QPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE-RFIEIGS 205 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 206 GTSKKLAKRNAAAKMLLR 223 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 31 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79 >gi|77917582|ref|NP_001030113.1| RISC-loading complex subunit TARBP2 [Rattus norvegicus] gi|123780849|sp|Q3SWU0|TRBP2_RAT RecName: Full=RISC-loading complex subunit TARBP2 gi|74356245|gb|AAI04691.1| TAR (HIV-1) RNA binding protein 2 [Rattus norvegicus] gi|149031914|gb|EDL86826.1| TAR (HIV) RNA binding protein 2 [Rattus norvegicus] Length = 365 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 147 QPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE-RFIEIGS 205 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 206 GTSKKLAKRNAAAKMLLR 223 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 31 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79 >gi|74188185|dbj|BAE25768.1| unnamed protein product [Mus musculus] Length = 274 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 56 QPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE-RFIEIGS 114 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 115 GTSKKLAKRNAAAKMLLR 132 >gi|3334379|sp|P97473|TRBP2_MOUSE RecName: Full=RISC-loading complex subunit TARBP2; AltName: Full=Protamine-1 RNA-binding protein; Short=PRM-1 RNA-binding protein; AltName: Full=TAR RNA-binding protein 2 gi|1737216|gb|AAB38885.1| protamine-1 RNA binding protein [Mus musculus] Length = 365 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + + + LQE K PEY VT SGP H FT+ + G Sbjct: 147 QPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE-RFIEIGS 205 Query: 205 DCSKRAAEQVAAAEVLKR 222 SK+ A++ AAA++L R Sbjct: 206 GTSKKLAKRNAAAKMLLR 223 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 31 PISLLQEYG-TRIGKTPVYDLLKEEGQAHQPNFTFRVTVGD-TSCTGTGPS 79 >gi|12834450|dbj|BAB22917.1| unnamed protein product [Mus musculus] Length = 134 Score = 78.6 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 5/82 (6%) Query: 146 RALKSGKFRRDAKTELQEWA-----HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + D K++LQ+ K P YK GP H +TV V G Sbjct: 10 KEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERI 69 Query: 201 AQGMDCSKRAAEQVAAAEVLKR 222 G S + AE AA + L++ Sbjct: 70 GCGKGPSIQQAEMGAAMDALEK 91 >gi|321451362|gb|EFX63042.1| hypothetical protein DAPPUDRAFT_336024 [Daphnia pulex] Length = 270 Score = 78.6 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 66/170 (38%), Gaps = 35/170 (20%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFD 64 E+ + Y+F ++ +L +ALT +S + +Y+RLE +GD G L + F Sbjct: 100 VKAFEEILNYSFNDKEVLLEALT---YGNSIRSLNYQRLEVIGDAAFGFLAALNFFKQSL 156 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110 G++S ++ V +T +A + + ++I+ + +L K + F Sbjct: 157 YHSAGDISQLRSACVCNDTFGMLAAKRNFHAYIQNLPPNLVKHLEDFLEFAESENFAPFD 216 Query: 111 ---------------MTSIQADVVESLIAALYLDG--GIEVAGTFVDKYW 143 + + ADV E++ A+ D E + Sbjct: 217 RELAENEEIIATQVAIPTFLADVFEAVAGAVITDSNLSFETLEKVFVPFM 266 >gi|222631053|gb|EEE63185.1| hypothetical protein OsJ_17994 [Oryza sativa Japonica Group] Length = 787 Score = 78.6 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TPEY T + GP H+P F V I+ + G +++AAEQ Sbjct: 36 FKSRLQEYAQKAGLQTPEYH-TSKEGPSHEPVFKSTVVINNTSYGSLPGF-SNRKAAEQS 93 Query: 215 AAAEVL 220 AA L Sbjct: 94 AAEVAL 99 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 4/64 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTF-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE+A P Y T SG F VEI G+ +K+ AE AA Sbjct: 472 KNLLQEYAQKMNYAIPSYICTKPASGLAP---FLCTVEIGGIQYIGAAARTKKDAEIKAA 528 Query: 217 AEVL 220 L Sbjct: 529 RTAL 532 >gi|125551761|gb|EAY97470.1| hypothetical protein OsI_19399 [Oryza sativa Indica Group] Length = 787 Score = 78.6 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TPEY T + GP H+P F V I+ + G +++AAEQ Sbjct: 36 FKSRLQEYAQKAGLQTPEYH-TSKEGPSHEPVFKSTVVINNTSYGSLPGF-SNRKAAEQS 93 Query: 215 AAAEVL 220 AA L Sbjct: 94 AAEVAL 99 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 4/64 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTF-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE+A P Y T SG F VEI G+ +K+ AE AA Sbjct: 472 KNLLQEYAQKMNYAIPSYICTKPASGLAP---FICTVEIGGIQYIGAAARTKKDAEIKAA 528 Query: 217 AEVL 220 L Sbjct: 529 RTAL 532 >gi|115463113|ref|NP_001055156.1| Os05g0307400 [Oryza sativa Japonica Group] gi|122169278|sp|Q0DJA3|DRB3_ORYSJ RecName: Full=Double-stranded RNA-binding protein 3; AltName: Full=dsRNA-binding protein 3 gi|113578707|dbj|BAF17070.1| Os05g0307400 [Oryza sativa Japonica Group] gi|215704133|dbj|BAG92973.1| unnamed protein product [Oryza sativa Japonica Group] Length = 437 Score = 78.6 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TPEY T + GP H+P F V I+ + G +++AAEQ Sbjct: 36 FKSRLQEYAQKAGLQTPEYH-TSKEGPSHEPVFKSTVVINNTSYGSLPGF-SNRKAAEQS 93 Query: 215 AAAEVL 220 AA L Sbjct: 94 AAEVAL 99 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 4/64 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTF-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE+A P Y T SG F VEI G+ +K+ AE AA Sbjct: 122 KNLLQEYAQKMNYAIPSYICTKPASGLAP---FLCTVEIGGIQYIGAAARTKKDAEIKAA 178 Query: 217 AEVL 220 L Sbjct: 179 RTAL 182 >gi|255545990|ref|XP_002514055.1| conserved hypothetical protein [Ricinus communis] gi|223547141|gb|EEF48638.1| conserved hypothetical protein [Ricinus communis] Length = 361 Score = 78.6 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A K TP Y+ GP H+P F V ++ + G +++AAEQ Sbjct: 17 FKSRLQEYAQKKGLPTPVYETIKE-GPSHEPSFRSTVIVNDIRYDSLPGF-FNRKAAEQS 74 Query: 215 AAAEVL 220 AA L Sbjct: 75 AAEVAL 80 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 23/63 (36%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y P F VEI G+ +K+ AE AA Sbjct: 104 KNLLQEYAQKMNYAIPLYLCQKNESPGRGTLFKCTVEIGGIHYIGASAKTKKEAEIKAAR 163 Query: 218 EVL 220 L Sbjct: 164 TAL 166 >gi|169605473|ref|XP_001796157.1| hypothetical protein SNOG_05760 [Phaeosphaeria nodorum SN15] gi|111065704|gb|EAT86824.1| hypothetical protein SNOG_05760 [Phaeosphaeria nodorum SN15] Length = 159 Score = 78.6 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 10/147 (6%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHS------SISHSYQESYERLEFLGDRILGLLI 55 SAL S E + + F NR LL +AL ++ + + + L LGD + ++ Sbjct: 9 SALILSACEALLSHTFTNRLLLLEALNNTGLPLVYNAKSHVLQRNDALAVLGDARMDAIL 68 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 ++ +G+ S T +Q+ R L + +++ + + Sbjct: 69 CRWWWDAGFQRVKGQWSQARLDKCGNVTLAQLGRRLGVDTYVIKNPG----TVVVSDKMV 124 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKY 142 A VE+L+ A+YLDGG E + Sbjct: 125 AMAVEALMGAVYLDGGEEALEGVMMAL 151 >gi|167046018|gb|ABZ10540.1| dicer-like protein A [Placozoa sp. DMJ-2008] Length = 351 Score = 78.2 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 62/170 (36%), Gaps = 35/170 (20%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH- 62 + E+ +GY F N L A THSS +YE+LEF+GD IL L+ LF Sbjct: 180 EKLHKFEENLGYKFINIDYLILAFTHSSSEFGDSFNYEKLEFVGDSILNYLVIKYLFLAT 239 Query: 63 ----------FDSAKEGELSVRFNSLVSAETC---SQVARELDLA------SFIRVSSDL 103 + A E+ + + S +E+ L + S Sbjct: 240 DQDITRSKFFYGIAISNEVYGLLSYAYNFHHLFYQSPFVKEMILGFEKKTADLLEGGSIP 299 Query: 104 RKDVCS------FMTSI---------QADVVESLIAALYLDGGIEVAGTF 138 R F SI ADV ESL AA+Y D G ++ + Sbjct: 300 RNGNKHDWVYTIFSKSIDDDFSIPKELADVFESLAAAIYFDSGQNLSTVW 349 >gi|167046016|gb|ABZ10539.1| dicer-like protein A [Trichoplax adhaerens] Length = 351 Score = 78.2 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 62/170 (36%), Gaps = 35/170 (20%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH- 62 + E+ +GY F N L A THSS +YE+LEF+GD IL L+ LF Sbjct: 180 EKLHKFEENLGYKFINIDYLILAFTHSSSEFGDSFNYEKLEFVGDSILNYLVIKYLFLAT 239 Query: 63 ----------FDSAKEGELSVRFNSLVSAETC---SQVARELDLA------SFIRVSSDL 103 + A E+ + + S +E+ L + S Sbjct: 240 DQDITRSKFFYGIAISNEVYGLLSYAYNFHHLFYQSPFVKEMILGFEKKTADLLEGGSIP 299 Query: 104 RKDVCS------FMTSI---------QADVVESLIAALYLDGGIEVAGTF 138 R F SI ADV ESL AA+Y D G ++ + Sbjct: 300 RNGNKHDWVYTIFSKSIDDDFSIPKELADVFESLAAAIYFDSGQNLSTVW 349 >gi|294881178|ref|XP_002769283.1| hypothetical protein Pmar_PMAR007697 [Perkinsus marinus ATCC 50983] gi|239872561|gb|EER02001.1| hypothetical protein Pmar_PMAR007697 [Perkinsus marinus ATCC 50983] Length = 798 Score = 78.2 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 30/161 (18%) Query: 14 GYAFA-NRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 GY F + LL +A TH+S++ S S ERLE++GD +LG ++ ++ L Sbjct: 560 GYEFRRHPWLLMEAFTHASVAAVSPSYSNERLEWIGDAVLGAVV----WSKLYEEGRATL 615 Query: 72 SVRFNSLVSAETCSQVARELDLASFIR---VSSDLRKDVCSFM-------------TSIQ 115 S F ++VA L L + R +S L+ + ++ Sbjct: 616 SS-FIDYTCNFHLARVAV-LKLGAQNRINVLSVALQSAIGRYVRELHHDEQPVPKGPKAL 673 Query: 116 ADVVESLIAALYLDG------GIEVAGTFVDKYWKQRALKS 150 AD VE++I A++LD G + A F+ L Sbjct: 674 ADCVEAIIGAIWLDAGGSTGEGWDAAARFIRDNVFSLELAE 714 >gi|294937286|ref|XP_002782038.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239893277|gb|EER13833.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 452 Score = 78.2 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 30/161 (18%) Query: 14 GYAFA-NRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 GY F + LL +A TH+S++ S S ERLE++GD +LG ++ ++ L Sbjct: 253 GYEFRRHPWLLMEAFTHASVAAVSPSYSNERLEWIGDAVLGAVV----WSKLYEEGRATL 308 Query: 72 SVRFNSLVSAETCSQVARELDLASFIR---VSSDLRKDVCSFM-------------TSIQ 115 S F ++VA L L + R +S L+ + ++ Sbjct: 309 SS-FIDYTCNFHLARVAV-LKLGAQNRINVLSVALQSAIGRYVRELHHDEQPVPKGPKAL 366 Query: 116 ADVVESLIAALYLDG------GIEVAGTFVDKYWKQRALKS 150 AD VE++I A++LD G + A F+ L Sbjct: 367 ADCVEAIIGAIWLDAGGSTGEGWDAAARFIRDNVFSLELAE 407 >gi|253741929|gb|EES98787.1| Dicer [Giardia intestinalis ATCC 50581] Length = 750 Score = 78.2 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 10/127 (7%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LL+ ALT + Y++LE LGD L ++ L + EG L+ S S Sbjct: 630 RLLQLALT--------PQVYQKLELLGDAFLKCSLALHLHTRHPTLTEGALTRMRQSAES 681 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + ++L + + V +D + + D ES++AA+ L G E A +FV Sbjct: 682 NHVLGVLTKKLP-SPVLEVITDA-HPGIQPDSKVYGDTFESILAAVLLACGEEAASSFVR 739 Query: 141 KYWKQRA 147 K R Sbjct: 740 KLVLPRV 746 Score = 74.7 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 6/110 (5%) Query: 35 SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94 S+ + ++RLE LGD +LG +++ L F +A G L LV ET + + R L L Sbjct: 327 SHTDIFQRLELLGDAVLGFIVTARLLCLFPNASIGTLVELKMELVRNETLNHLTRMLGLP 386 Query: 95 SFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVDKYW 143 +S+ L + AD+ E ++ +++ GI F+ + + Sbjct: 387 QLAEISNQLLAS-----SKTWADMYEEIVGSIFTGPNGINGCEEFLARTF 431 >gi|242221926|ref|XP_002476701.1| predicted protein [Postia placenta Mad-698-R] gi|220724029|gb|EED78105.1| predicted protein [Postia placenta Mad-698-R] Length = 232 Score = 78.2 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLF 60 + S +E +GY F +++LL +ALTH+S SYERLEFLGD L ++++ L+ Sbjct: 176 QLSLVETMLGYEFTHKALLVQALTHASYHGDLTTMSYERLEFLGDSALDMVVTDWLY 232 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 31/132 (23%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +Y+RLE LGD +L + S LF + EG L+ R + VS ++ A L +I Sbjct: 12 NYQRLETLGDTVLKYITSIKLFADYPLWHEGYLARRKDHAVSNVQLAKCAISKGLYQWII 71 Query: 99 -------------------VSSDLRKDVC------------SFMTSIQADVVESLIAALY 127 + S T + ADVVESLI A Y Sbjct: 72 RDRFVPRKWRPHYMSGPEDIGSRTEGANGNNDDKKKKTKTQELSTKVLADVVESLIGAAY 131 Query: 128 LDGGIEVAGTFV 139 GG ++A + Sbjct: 132 EHGGFDLAVNCI 143 >gi|296863417|pdb|3ADL|A Chain A, Structure Of Trbp2 And Its Molecule Implications For Mirna P Length = 88 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 LQE K PEY VT SGP H FT+ + G SK+ A++ AAA++ Sbjct: 20 ALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNAAAKM 78 Query: 220 LKR 222 L R Sbjct: 79 LLR 81 >gi|50308581|ref|XP_454293.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49643428|emb|CAG99380.1| KLLA0E07635p [Kluyveromyces lactis] Length = 315 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 71/229 (31%), Gaps = 30/229 (13%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 SLL + LT S S L G +L L +++ L + L+ ++ ++ Sbjct: 68 SLLSRCLTCRS-SGEVNYDNVSLNIFGKSLLTLAVTSELMKKYPRLPGVVLNAAVDAYIN 126 Query: 81 AETCSQVARELDLA-----------------------SFIRVSSDLRKDVCSFMTSIQAD 117 S V R + + + S D + A Sbjct: 127 DHVLSNVGRSWGIEPETQSVVDRYAKKENVTITLGKLRYFQNSVDELHNFTENNA--MAV 184 Query: 118 VVESLIAALY-LDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174 V S+ AA+Y +D F+ + R L EL + P Sbjct: 185 AVRSIFAAVYSVDKDFNQTHKFIADHILSRKLDVKDLFAFEQPTRELAALCRRQGLERPV 244 Query: 175 YKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K+ +G P F V V +G S + A+ AA + L + Sbjct: 245 SKLLAENGRLSKSPLFIVGVFSGEEKLGEGYGSSLKEAKARAATDALLK 293 >gi|302816661|ref|XP_002990009.1| hypothetical protein SELMODRAFT_130786 [Selaginella moellendorffii] gi|300142320|gb|EFJ09022.1| hypothetical protein SELMODRAFT_130786 [Selaginella moellendorffii] Length = 127 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 7/124 (5%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 Y F + +LL+ ALTHSS S + L LG I+ + A + EL Sbjct: 1 YKFNDSTLLQDALTHSSYSRH---NNGPLHLLGVSIIRASVYKHYLAKNRDATKEELEAM 57 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 +SL S C++ A L L IR V + A L A+ +DG + Sbjct: 58 SSSLSSTTACARRASGLGLDKLIR----ADVPVDRKSDKVLAVAFHVLFGAIAMDGSADQ 113 Query: 135 AGTF 138 A + Sbjct: 114 AMSV 117 >gi|321456688|gb|EFX67789.1| hypothetical protein DAPPUDRAFT_261055 [Daphnia pulex] Length = 279 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 2/102 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHF 63 + +E +GY F ++ L+ LTH S + + E +RLE LGD +LG L+ + + Sbjct: 74 LAVIETTLGYEFRHKENLKLPLTHISTNPNKVPSEDSDRLETLGDILLGTLVMAICYTTC 133 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 + GEL+ + + +T + +A + L + + + + R Sbjct: 134 PTYGAGELTNLTSMITCNDTFAVLAVRMGLHAHLNHNMNKRN 175 >gi|169607859|ref|XP_001797349.1| hypothetical protein SNOG_06991 [Phaeosphaeria nodorum SN15] gi|111064522|gb|EAT85642.1| hypothetical protein SNOG_06991 [Phaeosphaeria nodorum SN15] Length = 843 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 17/162 (10%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKAL-----THSSISHSY---QESYERLEFLGDRILGL 53 +A LE R+GY F NR +AL HS RL LGDR+L L Sbjct: 98 AAATLGALEVRLGYTFQNRMTGIEALKVTGNVHSLYYDGAVYETGMNNRLALLGDRVLSL 157 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 + + F G ++ + VS + +L L I + Sbjct: 158 ALCEIWFQT--DHPNGGYALMSSQTVSRAALAVTGHKLGLHLSILTGDG----KGVTRDN 211 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 I A+ E+++ A+Y+D G + V ++ + + + Sbjct: 212 I-AETFEAIMGAVYVDSGYNM--KVVKDVIGRQKIDDHFYLK 250 >gi|242084480|ref|XP_002442665.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor] gi|241943358|gb|EES16503.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor] Length = 394 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TPEY GP H+P F V ++ G S++AAEQ Sbjct: 38 FKSRLQEYAQKAGLPTPEYHTLKE-GPSHEPVFKSTVLVNNTTYESLPGF-FSRKAAEQS 95 Query: 215 AAAEVL 220 AA L Sbjct: 96 AAEVAL 101 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE+A P Y T + SG F VEI G+ +K+ AE AA Sbjct: 126 KNLLQEYAQKMNYAIPSYICTKQASGVAP---FICTVEIGGIQYIGAAARTKKEAEIKAA 182 Query: 217 AEVL 220 L Sbjct: 183 RTAL 186 >gi|321445499|gb|EFX60714.1| hypothetical protein DAPPUDRAFT_123225 [Daphnia pulex] Length = 145 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 2/95 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +EK IGY F N+ LL +A+THSS ++ ESY E++GDR+LG ++ + + Sbjct: 26 LEEVEKTIGYIFKNKLLLIQAMTHSSYKNNCLTESYNEQEWIGDRVLGFEMAKFVSLNCQ 85 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 S F +L S E + + + I++ Sbjct: 86 D-TVDAKSATFATLTSNEFWAVLTVRHGIHKHIKL 119 >gi|302790644|ref|XP_002977089.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii] gi|300155065|gb|EFJ21698.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii] Length = 299 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y+ +GP H+ F VEI G+ G SK+ AE AA Sbjct: 89 KNVLQEYAQRNGFSLPIYQ-IEITGPSHNSVFAATVEIGGVLYKGGTAKSKKEAEVKAAR 147 Query: 218 EVL 220 + Sbjct: 148 TAI 150 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215 K++LQE+A P+Y + G H PRF VE++G+ + +AAE A Sbjct: 2 YKSQLQEFAQKSGWTVPQYDSIKQ-GLPHLPRFQASVEVNGVKYESEDGFPNLKAAEHSA 60 Query: 216 AAEVL 220 A + L Sbjct: 61 AKKAL 65 >gi|301108992|ref|XP_002903577.1| Dicer-like 1 (DCL1) [Phytophthora infestans T30-4] gi|262097301|gb|EEY55353.1| Dicer-like 1 (DCL1) [Phytophthora infestans T30-4] Length = 1664 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 71/229 (31%), Gaps = 85/229 (37%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY---------------------------- 36 R L++R+ Y F N+ LL +A+TH S+ Sbjct: 1402 RLMLLQQRLKYTFRNKRLLLEAVTHPSVGQLVLHIDQMDANGADGNADGNAGGDIEVMSR 1461 Query: 37 ---------QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 + YERLE+LGD ++ L + F +D G LS ++ VS + + Sbjct: 1462 SQKKKKTVWKGDYERLEYLGDALIEYLTLSYAFLMYDKWLPGSLSQWKSATVSNDALGKT 1521 Query: 88 ARE-LDLASFIRVS--------------------SDLRKDV------------------- 107 A + I Sbjct: 1522 ALACFGVDECIFAGAVRIDRETMDRVAGIERKYARAEASTGLSPVFEAVGVSKKKAKSKN 1581 Query: 108 ------CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 + + ADV E+L+AA++LD G ++ V + L++ Sbjct: 1582 APNGGNSHTLPKMFADVFEALVAAVFLDSGRDL--QLVRDVFMGPLLQT 1628 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 25/152 (16%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + S L +IG + +LL+ A T + +YERLE LGD L L S ++ Sbjct: 1203 QISHLMGKIGLEL-DMTLLDDATT--------KPAYERLEILGDTFLKLETSWYMYEQRK 1253 Query: 65 S-AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQ------- 115 +EG+L+ ++ + +Q A L ++ ++ + + S Sbjct: 1254 DIYQEGQLTQLRRDIIRNDRLNQFALAARLHHYMLYPAEVEQHPFQCWKPSCMGKTPDPV 1313 Query: 116 -------ADVVESLIAALYLDGGIEVAGTFVD 140 ADV+E++ A + G + A F+ Sbjct: 1314 VAPAKWIADVLEAITGAYLVGQGEKGARYFLK 1345 >gi|312212763|emb|CBX92846.1| hypothetical protein [Leptosphaeria maculans] Length = 1067 Score = 76.7 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 15/151 (9%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKAL--THSSISHSYQ------ESYERLEFLGDRILGL 53 +A+R +E R GY F N+ L +AL T + Y+ + RL LGDR+LGL Sbjct: 123 AAVRVGHIEARTGYNFKNKFLCIEALKNTGKNWPLYYKGVVVEIDRNNRLALLGDRVLGL 182 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 + + F G SV + + + + R + L I + +L S + Sbjct: 183 ALCEIWF--HSGHSTGNYSVMNSFIETRAALNVTGRAMKLHQDILLQHELAVPANSHV-- 238 Query: 114 IQADVVESLIAALYLDGGIEV-AGTFVDKYW 143 A+ E++I A+Y+D G V A V K+ Sbjct: 239 --AEAFEAIIGAIYVDSGHNVPAVKEVLKHL 267 >gi|145502809|ref|XP_001437382.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124404532|emb|CAK69985.1| unnamed protein product [Paramecium tetraurelia] Length = 351 Score = 76.7 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 94/238 (39%), Gaps = 36/238 (15%) Query: 15 YAFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLL----FN 61 ++F N + L +ALT+ YQ + E +G IL S L ++ Sbjct: 34 FSFQNTNTLAQALTNKIHELEYQSKKGVKYPFGNNEDFVGIGQMILEFYFSDYLIQRGWH 93 Query: 62 HFDSA-----KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 + + K +L + L+S + +A + + ++V + + I A Sbjct: 94 SYPNKESQIKKSSDLVLLRQRLLSERNLADIALSYKIDNIVQVGNQI---GLKKNPKILA 150 Query: 117 DVVESLIAALYLDGGI------EVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKF 169 + ++++IAA Y D G EV + + + + + + +++ K+ E+ + Sbjct: 151 ETLKAIIAAQYYDSGYDLDHLREVVQPILKQVLDKGQGVPIVELKQNPKSAFLEFVNGCT 210 Query: 170 GVTPEYKVTFRSGPDHDP------RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + P KV+ D + V +E+S L + +KR EQ+ E LK Sbjct: 211 NLKP--KVSVEWKKDSSQNGNPINVYQVQLELSNLLSITRVGINKRNTEQIVYREALK 266 >gi|251764897|sp|B0V3F8|PRKRA_DANRE RecName: Full=Interferon-inducible double stranded RNA-dependent protein kinase activator A homolog gi|169146119|emb|CAQ15451.1| novel protein similar to H.sapiens PRKRA, protein kinase, interferon-inducible double stranded RNA dependent activator (PRKRA, zgc:162619) [Danio rerio] Length = 282 Score = 76.7 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE A + PEY V +GP H FT+ + GL G SK+ A + A Sbjct: 99 NPVGILQELAMQRVWCLPEYVVFMETGPGHMKEFTIACRLEGLEE-TGSGSSKKLARRAA 157 Query: 216 AAEVLKRE 223 A ++ + Sbjct: 158 AENMIAKL 165 Score = 38.1 bits (88), Expect = 0.96, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%) Query: 158 KTELQEWAHA---KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 KT +Q H K P+Y++ G H P F V I G +G + Sbjct: 9 KTPIQ-LLHEYGIKISSAPKYELIHADGDAHQPSFMFSVTI-GEVTCKGRGST 59 >gi|148235737|ref|NP_001082830.1| interferon-inducible double stranded RNA-dependent protein kinase activator A [Danio rerio] gi|134025033|gb|AAI35035.1| Zgc:162619 protein [Danio rerio] Length = 282 Score = 76.7 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE A + PEY V +GP H FT+ + GL G SK+ A + A Sbjct: 99 NPVGILQELAMQRVWCLPEYVVFMETGPGHMKEFTIACRLEGLEE-TGSGSSKKLARRAA 157 Query: 216 AAEVLKRE 223 A ++ + Sbjct: 158 AENMIAKL 165 Score = 38.1 bits (88), Expect = 0.96, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%) Query: 158 KTELQEWAHA---KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 KT +Q H K P+Y++ G H P F V I G +G + Sbjct: 9 KTPIQ-LLHEYGIKISSAPKYELIHADGDAHQPSFMFSVTI-GEVTCKGRGST 59 >gi|301055340|ref|YP_003793551.1| C-terminal part of ribonuclease III [Bacillus anthracis CI] gi|300377509|gb|ADK06413.1| C-terminal part of ribonuclease III [Bacillus cereus biovar anthracis str. CI] Length = 74 Score = 76.7 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 D K++LQE EY++ GP H+ F V ++ +A G SK+ Sbjct: 2 MDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTLNNVALGLGSGKSKK 56 >gi|294881176|ref|XP_002769282.1| hypothetical protein Pmar_PMAR007696 [Perkinsus marinus ATCC 50983] gi|239872560|gb|EER02000.1| hypothetical protein Pmar_PMAR007696 [Perkinsus marinus ATCC 50983] Length = 1394 Score = 76.7 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 19/133 (14%) Query: 14 GYAF-ANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 GY F + LL ++LTH+S++ S S ERLE++GD +LG ++ LF + Sbjct: 1136 GYVFEKHPWLLTESLTHASVTSVSASYSNERLEWIGDAVLGAVVLQWLFKL--EKPPKNI 1193 Query: 72 SVRFNSLVSAETCSQVARE-LDLASFIR-VSSDLRKDVCSFM-------------TSIQA 116 F + ++VA E L + S+ L + V F+ A Sbjct: 1194 VEAFTANTCNAHLAKVAVERLGVPDLFNAFSAPLLRAVNRFVNELFSGRAVVRRGPKPLA 1253 Query: 117 DVVESLIAALYLD 129 D VE++I A++LD Sbjct: 1254 DCVEAIIGAVWLD 1266 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 14/143 (9%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK---- 67 +G N +L + LT ER E+LG+ IL L++S +++ SA Sbjct: 933 LLGLPPLNPRVLCEVLTPKRC--QALVDSERYEYLGNSILQLVVSESVWSKQFSAGGASL 990 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRV--------SSDLRKDVCSFMTSIQADVV 119 EG+L+ ++S + SQ A E + S +++ KD+ +TS + Sbjct: 991 EGKLTSDRQKIISRKRMSQKAVEGGILSLMQMRSPAAVGVGGAATKDILVSITSAARSCM 1050 Query: 120 ESLIAALYLDGGIEVAGTFVDKY 142 +LI AL G++ V K+ Sbjct: 1051 LALIGALCDSHGVDCVVKAVTKF 1073 >gi|18656508|gb|AAL77809.1|AF389451_16 ribonuclease-like protein [Tiger frog virus] Length = 371 Score = 76.7 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 79/222 (35%), Gaps = 27/222 (12%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG----ELSVRF 75 R L K T S++ ++YE LE +GD + + F ++ Sbjct: 25 RDLWNKVFTPKSVNPD--DNYEALEIVGDGVASYFFPSYFLKRFPQLNSPKGVKTVARLK 82 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA--------LY 127 S ++ S +A L FIR S S S+ D E+ + A Sbjct: 83 IYYGSKKSFSSIADSLGFWKFIR--SGPMPVNPSTRESLLEDTFEAFLGAVCMAVDDEYS 140 Query: 128 LDG-GIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +DG G VA + + + D T L+E K V V G Sbjct: 141 IDGLGAVVAYKIMADIFDDMDISLEYTALFDTVTRLKELMDVKKDVLGGDAVYNHMGD-- 198 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRA-AEQVA--AAEVLKREG 224 T V+ ++G + KR A++ A A ++L+REG Sbjct: 199 ----TTVITLNGRVIGKATGAIKRDRAKEAAGQALDLLRREG 236 >gi|169146118|emb|CAQ15450.1| novel protein similar to H.sapiens PRKRA, protein kinase, interferon-inducible double stranded RNA dependent activator (PRKRA, zgc:162619) [Danio rerio] Length = 300 Score = 76.7 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE A + PEY V +GP H FT+ + GL G SK+ A + A Sbjct: 117 NPVGILQELAMQRVWCLPEYVVFMETGPGHMKEFTIACRLEGLEE-TGSGSSKKLARRAA 175 Query: 216 AAEVLKRE 223 A ++ + Sbjct: 176 AENMIAKL 183 Score = 38.1 bits (88), Expect = 0.98, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%) Query: 158 KTELQEWAHA---KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 KT +Q H K P+Y++ G H P F V I G +G + Sbjct: 27 KTPIQ-LLHEYGIKISSAPKYELIHADGDAHQPSFMFSVTI-GEVTCKGRGST 77 >gi|193627224|ref|XP_001952647.1| PREDICTED: hypothetical protein LOC100161769 [Acyrthosiphon pisum] Length = 732 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 75/207 (36%), Gaps = 24/207 (11%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 THSS S S+E +F G + +L ELS F + V + Sbjct: 539 THSSYS---LLSFETGQFTG-----HTGAKVL-------TPAELSAGFQTWVKKDQLKNS 583 Query: 88 A-RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTF----VDK 141 A + + + + Q+ +E L+ + +D G+ + + Sbjct: 584 APVNSGIGIHLLQKMGWKP--GEGLGKNQSGSLEPLLLDVKMDKRGLVAEEELQGSRIKR 641 Query: 142 YWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + K+ L + + L E+ + P++ SGP H F + V ++G+ Sbjct: 642 FSKKATLPVLSLEGKHPVSLLNEFCAKRKWDIPKFNTLDESGPSHRKTFIMTVVVNGVQY 701 Query: 201 AQGMDCSKRAAEQVAAAEVLKREGIWT 227 +K+ A+ AA E LK G+ Sbjct: 702 CSSRCQTKKLAKMEAAKECLKEIGLLN 728 >gi|317149047|ref|XP_001823093.2| RNAse III [Aspergillus oryzae RIB40] Length = 155 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 11/144 (7%) Query: 5 RYSTLEKRIGYAFANRSLLEKAL-THSSIS---HSYQESYERLEFLGDRILGLLISTLLF 60 R +E+ I Y F N + + +AL T S++ + ++ L LGD L L+++ + Sbjct: 11 RIQLIEQIINYTFTNPATIHEALRTPGSMAILTPHRLDGHKDLAQLGDAALRLVLAKDGY 70 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 A G+++ + S ++ + L +I V+ + A VE Sbjct: 71 QAH--ATRGQINDTHSGKASNAFLARTGFQKGLDRYIYVNPS---QGGIVSDKVMATTVE 125 Query: 121 SLIAALYLDGG--IEVAGTFVDKY 142 +++ A+Y+D G I + V K Sbjct: 126 AILGAVYIDSGEDIPAVRSVVAKL 149 >gi|229891681|sp|B6P4U0|TRBP2_BRAFL RecName: Full=Probable RISC-loading complex subunit BRAFLDRAFT_242885 Length = 319 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + +LQE + PEY V GP H FT+ V++ G SK+AA++ A Sbjct: 120 NPIGQLQELVVERGWRLPEYIVISEQGPPHCKEFTIQVKVEKFKD-TGTGSSKKAAKRSA 178 Query: 216 AAEVLKRE 223 A +L R Sbjct: 179 AGVLLTRL 186 Score = 43.9 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE + G T +Y + G H F V + G A G S Sbjct: 7 PISLLQELS-THMGKTAQYDLIATEGAAHQQTFVFRVTV-GEVVATGAGLS 55 >gi|296089026|emb|CBI38729.3| unnamed protein product [Vitis vinifera] Length = 227 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 7/104 (6%) Query: 118 VVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + ES+ A++LD G + A + V + + ELQE + EYK Sbjct: 23 ICESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGL-EYK 81 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 T RSG TV V I G+ + K+ A+++AA L Sbjct: 82 AT-RSGN----LATVEVFIDGVQIGIAQNPQKKMAQKLAARNAL 120 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 6/72 (8%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214 L + + P Y+ GP H RFT V ++ + + S + A+ Sbjct: 154 LNDICLRRNWPMPVYRCVNEGGPAHAKRFTFAVRVNTNDKGWTDECIGEPMPSVKKAKDS 213 Query: 215 AAAEVLKREGIW 226 AA +L+ W Sbjct: 214 AAVLLLELLNKW 225 >gi|225734446|gb|ACO25214.1| RNase III [Epizootic haematopoietic necrosis virus] Length = 372 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 78/222 (35%), Gaps = 27/222 (12%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG----ELSVRF 75 R L K T S++ ++YE LE +GD + + F ++ Sbjct: 25 RDLWNKVFTPKSVNPD--DNYEALEIMGDGVASYFFPSYFLKRFPQLNSPKGVKTVARLK 82 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA--------LY 127 S ++ S +A L FIR S S S+ D E+ + A Sbjct: 83 IYYGSKKSFSSIADSLGFWKFIR--SGPVPVNPSTRESLLEDTFEAFLGAVCTAVDDEYS 140 Query: 128 LDG-GIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +DG G VA + + + D T L+E K V V G Sbjct: 141 IDGLGAVVAYKIMADIFDDMDISLEYTALFDTVTRLKELMDVKKDVLGGDAVYDHRGD-- 198 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRA-AEQVA--AAEVLKREG 224 T V+ + G + KR A++ A A ++L+REG Sbjct: 199 ----TTVITLKGRVIGKATGAIKRDRAKEAAGQALDLLRREG 236 >gi|323126808|gb|ADX24105.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 79 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 7 STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 LE+ + F + +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 2 KKLEELLAASFDICFEDHTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEY 61 Query: 59 LFNHFDSAKE 68 LF + ++ Sbjct: 62 LFAKYPKKQK 71 >gi|158706450|sp|A2QX45|DCL22_ASPNC RecName: Full=Dicer-like protein 2-2; Includes: RecName: Full=Endoribonuclease dcl2-2; Includes: RecName: Full=ATP-dependent helicase dcl2-2 Length = 1362 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 69/224 (30%), Gaps = 64/224 (28%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E+ +GY F ++SL +++TH S + Q SY RL FLG +L ++ + L H Sbjct: 1079 EELLGYTFTDKSLAVESMTHPSCTGLVQTTSYRRLSFLGASVLEWIVVSYLHRHAQVMNP 1138 Query: 69 GELSVRFNSLVSAETCSQVARELD--------------------------LASFIRVSSD 102 + ++ + + +A L F+R+ SD Sbjct: 1139 QRMQSLKSAFTNNTFLTFIAITFHQVREQNHIDVDDEHNVHKNVTTCSIRLWDFLRLHSD 1198 Query: 103 LRKDVCSFM-------------------------------TSIQADVVESLIAALYLDG- 130 S + +D+++S+ A+++D Sbjct: 1199 ALSTELSDFVQKSSEKADAIKHELWEQRFYPWVRLRALGDMRVLSDIIQSIFGAVFIDSQ 1258 Query: 131 -GIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKF 169 + +K + + K LQ + Sbjct: 1259 ATLASCDALAEKLGIVPLLEHFISHQITTDHPKDTLQAILPGRK 1302 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 22/163 (13%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 LL A+ +SI ++ ++ L F+GD + L + LF H EG LS Sbjct: 905 QRIDLLAIAIRPTSI--EHRATFRLLAFIGDAFMKYLFAMQLFLHHHLWHEGLLSSLKQR 962 Query: 78 LVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSFMTSI----QADVVE 120 +S + + L F+ VS + SI AD+ + Sbjct: 963 NLSDAGLAHAIHQSGLGKFLISKHLNGKRWVPPLVSGIEPASNEARQRSIGAATLADMTK 1022 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD---AKTE 160 +++ A + DGG+ A + + + D +KT Sbjct: 1023 AVVGAAFTDGGLNQAAACASVMFPKLKSWNASSLHDGTYSKTR 1065 >gi|134079420|emb|CAK40801.1| unnamed protein product [Aspergillus niger] Length = 1379 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 69/224 (30%), Gaps = 64/224 (28%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E+ +GY F ++SL +++TH S + Q SY RL FLG +L ++ + L H Sbjct: 1096 EELLGYTFTDKSLAVESMTHPSCTGLVQTTSYRRLSFLGASVLEWIVVSYLHRHAQVMNP 1155 Query: 69 GELSVRFNSLVSAETCSQVARELD--------------------------LASFIRVSSD 102 + ++ + + +A L F+R+ SD Sbjct: 1156 QRMQSLKSAFTNNTFLTFIAITFHQVREQNHIDVDDEHNVHKNVTTCSIRLWDFLRLHSD 1215 Query: 103 LRKDVCSFM-------------------------------TSIQADVVESLIAALYLDG- 130 S + +D+++S+ A+++D Sbjct: 1216 ALSTELSDFVQKSSEKADAIKHELWEQRFYPWVRLRALGDMRVLSDIIQSIFGAVFIDSQ 1275 Query: 131 -GIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKF 169 + +K + + K LQ + Sbjct: 1276 ATLASCDALAEKLGIVPLLEHFISHQITTDHPKDTLQAILPGRK 1319 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 22/163 (13%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 LL A+ +SI ++ ++ L F+GD + L + LF H EG LS Sbjct: 922 QRIDLLAIAIRPTSI--EHRATFRLLAFIGDAFMKYLFAMQLFLHHHLWHEGLLSSLKQR 979 Query: 78 LVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSFMTSI----QADVVE 120 +S + + L F+ VS + SI AD+ + Sbjct: 980 NLSDAGLAHAIHQSGLGKFLISKHLNGKRWVPPLVSGIEPASNEARQRSIGAATLADMTK 1039 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD---AKTE 160 +++ A + DGG+ A + + + D +KT Sbjct: 1040 AVVGAAFTDGGLNQAAACASVMFPKLKSWNASSLHDGTYSKTR 1082 >gi|325284065|ref|YP_004256606.1| double-stranded RNA binding domain-containing protein [Deinococcus proteolyticus MRP] gi|324315874|gb|ADY26989.1| double-stranded RNA binding domain protein [Deinococcus proteolyticus MRP] Length = 169 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + K EL A+ +PE++V SGP H PRF V G QG S+R AE+ A Sbjct: 4 NPKGELIAALAAQGL-SPEFRVDG-SGPAHAPRFVAEVWCDGQRLGQGEGRSRREAERGA 61 Query: 216 AAEVLKRE 223 A + L+ Sbjct: 62 AVQALEEL 69 >gi|224150739|ref|XP_002337003.1| predicted protein [Populus trichocarpa] gi|222837556|gb|EEE75921.1| predicted protein [Populus trichocarpa] Length = 330 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215 K+ LQE A + P Y T +SG H P F VEI G G +K+ AE A Sbjct: 83 YKSLLQELAQREGCGLPTYW-TDKSGEAHVPTFVSKVEIEGE-IFTGQGAKTKKQAEMSA 140 Query: 216 AAEV 219 A Sbjct: 141 AKIA 144 Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 K +LQ +A + P Y R GP H RF V ++G Sbjct: 5 FKNQLQTYAQKRNFTLPVYSC-ERVGPPHASRFKCKVTVNGQTY 47 >gi|242210057|ref|XP_002470873.1| predicted protein [Postia placenta Mad-698-R] gi|220730100|gb|EED83963.1| predicted protein [Postia placenta Mad-698-R] Length = 219 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 12/121 (9%) Query: 37 QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL--- 93 + ERLEFLGD ++ I +L+ + +L S T S +A +LD+ Sbjct: 44 HDENERLEFLGDALMYATIGRMLYAQIPDGTPNLYTNIRAALHSNATFSHLAEKLDILAV 103 Query: 94 -ASFIR------VSSDLRKDVCSFMTSIQADV--VESLIAALYLDGGIEVAGTFVDKYWK 144 +S +R + I+A E++I A YL+ G E +V + ++ Sbjct: 104 SSSVLRALTIRNFGEAAAAPILKTKPEIKATADLFETVIGAYYLERGFEALCVWVKEIYR 163 Query: 145 Q 145 Sbjct: 164 P 164 >gi|218508317|ref|ZP_03506195.1| ribonuclease III [Rhizobium etli Brasil 5] Length = 75 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 42/63 (66%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +SA + LE IG+ FA + L++ALTH+S +YERLEFLGDR+LGL I+ LLF Sbjct: 7 LSAADRAKLENLIGHDFAEKERLDRALTHASARTEKGSNYERLEFLGDRVLGLCIAELLF 66 Query: 61 NHF 63 F Sbjct: 67 RTF 69 >gi|255524266|ref|ZP_05391225.1| ribonuclease III [Clostridium carboxidivorans P7] gi|255512091|gb|EET88372.1| ribonuclease III [Clostridium carboxidivorans P7] Length = 96 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 9/84 (10%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + LE+++ F ++ LL+ ALTHSS ++ + + ERLEFLGD +L + IS LF ++ Sbjct: 14 FVELEQKLDVCFEDKELLKIALTHSSYANGKKNIKFNERLEFLGDSVLQISISEYLFLNY 73 Query: 64 DSAKEGELSVRFNSLVSAETCSQV 87 +L+ E V Sbjct: 74 SK-------KLKENLLREEHLLCV 90 >gi|226506372|ref|NP_001150455.1| LOC100284085 [Zea mays] gi|195639400|gb|ACG39168.1| bcpLH protein [Zea mays] Length = 434 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TPEY GP H+P F V ++ G S++AAEQ Sbjct: 38 FKSRLQEYAQRVGIPTPEYHTLKE-GPSHEPVFKSTVFVNNTKYESLPGF-FSRKAAEQS 95 Query: 215 AAAEVL 220 AA L Sbjct: 96 AAEVAL 101 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE+A P Y T + SG F VEI G+ +K+ AE AA Sbjct: 126 KNLLQEYAQKMNYAIPSYICTKQASGVAP---FVCSVEIGGILYIGAAARTKKEAEIKAA 182 Query: 217 AEVL 220 L Sbjct: 183 RTAL 186 >gi|149639721|ref|XP_001515387.1| PREDICTED: similar to Protein kinase, interferon-inducible double stranded RNA dependent activator [Ornithorhynchus anatinus] Length = 397 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K + + LQE A PEY ++ SGP H F + ++ G SK Sbjct: 203 KQPQKPKSPINSLQELAMRCGWSLPEYTLSKESGPAHKKEFIMNCKLETYVE-TGTGASK 261 Query: 209 RAAEQVAAAEVLKRE 223 + A++ AA ++L + Sbjct: 262 KQAKESAAEKLLAKL 276 >gi|224135779|ref|XP_002322158.1| predicted protein [Populus trichocarpa] gi|222869154|gb|EEF06285.1| predicted protein [Populus trichocarpa] Length = 160 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 8/125 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 TL+ + GYAF N L +A+THSS S +E+ + L LG ++ +S Sbjct: 18 LDTLQNQTGYAFKNIGYLRRAMTHSSFS---EENNKALSILGSNVIDTSVSMYYLGKDAE 74 Query: 66 AKEGELSVRFNSLVSAET-CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +L+ R +T C+ L L +RVS + +L Sbjct: 75 ISSKDLNRRIADNSKVDTSCAVDGMRLGLHKVVRVSPKTNSTT----PLVVCSAFRALFG 130 Query: 125 ALYLD 129 A+ +D Sbjct: 131 AIAID 135 >gi|238494382|ref|XP_002378427.1| RNAse III, putative [Aspergillus flavus NRRL3357] gi|220695077|gb|EED51420.1| RNAse III, putative [Aspergillus flavus NRRL3357] Length = 155 Score = 75.5 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 11/144 (7%) Query: 5 RYSTLEKRIGYAFANRSLLEKAL-THSSIS---HSYQESYERLEFLGDRILGLLISTLLF 60 R +E+ I Y F N + + +AL T S++ + ++ L LGD L L+++ + Sbjct: 11 RIQLIEQIINYTFTNPATIHEALRTPGSMAILTPHRLDGHKDLAQLGDAALRLVLAKDGY 70 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 A G++ + S ++ + L +I V+ + A VE Sbjct: 71 QAH--ATRGQIDDTHSGKASNAFLARTGFQKGLDRYIYVNPS---QGGIVSDKVMATTVE 125 Query: 121 SLIAALYLDGG--IEVAGTFVDKY 142 +++ A+Y+D G I + V K Sbjct: 126 AILGAVYIDSGEDIPAVRSVVAKL 149 >gi|317033008|ref|XP_001394728.2| hypothetical protein ANI_1_2258094 [Aspergillus niger CBS 513.88] Length = 889 Score = 75.5 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 69/224 (30%), Gaps = 64/224 (28%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E+ +GY F ++SL +++TH S + Q SY RL FLG +L ++ + L H Sbjct: 606 EELLGYTFTDKSLAVESMTHPSCTGLVQTTSYRRLSFLGASVLEWIVVSYLHRHAQVMNP 665 Query: 69 GELSVRFNSLVSAETCSQVARELD--------------------------LASFIRVSSD 102 + ++ + + +A L F+R+ SD Sbjct: 666 QRMQSLKSAFTNNTFLTFIAITFHQVREQNHIDVDDEHNVHKNVTTCSIRLWDFLRLHSD 725 Query: 103 LRKDVCSFM-------------------------------TSIQADVVESLIAALYLDG- 130 S + +D+++S+ A+++D Sbjct: 726 ALSTELSDFVQKSSEKADAIKHELWEQRFYPWVRLRALGDMRVLSDIIQSIFGAVFIDSQ 785 Query: 131 -GIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKF 169 + +K + + K LQ + Sbjct: 786 ATLASCDALAEKLGIVPLLEHFISHQITTDHPKDTLQAILPGRK 829 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 22/163 (13%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 LL A+ +SI ++ ++ L F+GD + L + LF H EG LS Sbjct: 432 QRIDLLAIAIRPTSI--EHRATFRLLAFIGDAFMKYLFAMQLFLHHHLWHEGLLSSLKQR 489 Query: 78 LVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSFMTSI----QADVVE 120 +S + + L F+ VS + SI AD+ + Sbjct: 490 NLSDAGLAHAIHQSGLGKFLISKHLNGKRWVPPLVSGIEPASNEARQRSIGAATLADMTK 549 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD---AKTE 160 +++ A + DGG+ A + + + D +KT Sbjct: 550 AVVGAAFTDGGLNQAAACASVMFPKLKSWNASSLHDGTYSKTR 592 >gi|11931710|emb|CAC19124.1| CIV iridoviral protein homologue [Diadromus pulchellus ascovirus 4a] Length = 280 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 66/192 (34%), Gaps = 19/192 (9%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE----GELSV 73 N + A T + + + +YE E LGD + I + + F + L+ Sbjct: 24 NNSKIFAAAFT--TADYDPKFNYEFFEQLGDLTINKFIVSYMSRRFPQLRNRNGVNVLAT 81 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL------- 126 S S S ++ + L +R++ + D S+ DV E+L A+ Sbjct: 82 LRISYGSKNVLSGLSSKYGLDKLVRMTREESLDKTKSRLSVFEDVFEALFGAIEFVFDRD 141 Query: 127 -YLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G + + +K + DAKT L E A+ + Y+ S + Sbjct: 142 NFPGMGYVFCYRILTAMFDDLDVKIDYESLVDAKTRLNE-LKAEHKFSLTYR---DSRDE 197 Query: 185 HDPRFTVVVEIS 196 F I Sbjct: 198 ASGMFRSTAVID 209 >gi|49237378|ref|YP_031659.1| ribonuclease III [Frog virus 3] gi|228861295|ref|YP_002854318.1| ribonuclease III [Soft-shelled turtle iridovirus] gi|47060196|gb|AAT09740.1| ribonuclease III [Frog virus 3] gi|194307575|gb|ACF42305.1| ribonuclease III [Soft-shelled turtle iridovirus] Length = 371 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 78/222 (35%), Gaps = 27/222 (12%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG----ELSVRF 75 R L K T S++ ++YE LE +GD + + F ++ Sbjct: 25 RDLWNKVFTPKSVNPD--DNYEALEIVGDGVASYFFPSYFLKRFPQLNSPKGVKTVARLK 82 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA--------LY 127 S ++ S +A L FIR S S S+ D E+ + A Sbjct: 83 IYYGSKKSFSSIADSLGFWKFIR--SGPVPVNPSTRESLLEDTFEAFLGAVCMAVDDEYS 140 Query: 128 LDG-GIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +DG G VA + + + D T L+E K V V G Sbjct: 141 IDGLGAVVAYKIMADIFDDMDISLEYTALFDTVTRLKELMDVKKDVLGGDAVYNHRGD-- 198 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRA-AEQVA--AAEVLKREG 224 T V+ + G + KR A++ A A ++L+REG Sbjct: 199 ----TTVITLKGRVIGKATGAIKRDRAKEAAGQALDLLRREG 236 >gi|328784437|ref|XP_624606.3| PREDICTED: RISC-loading complex subunit tarbp2-like [Apis mellifera] Length = 383 Score = 75.1 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE ++ G TP+Y++ G H+P F V ++ + A G SK+ A+ AA Sbjct: 71 PVSILQELL-SRRGTTPKYELIQVEGAIHEPIFRYRVTVADVV-AMGTGKSKKEAKHAAA 128 Query: 217 AEVLKRE 223 VL + Sbjct: 129 RAVLDKL 135 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 K + LQE ++ P+Y + G H+ +FT+V + G SK+ Sbjct: 165 EEKIITNPIGALQEMCMSRHWPPPKYTIENEEGLPHERQFTIVCSVL-KYREVGQGKSKK 223 Query: 210 AAEQVAAAEVLKRE 223 A++ AA ++ + Sbjct: 224 VAKRHAAHKMWQAL 237 >gi|148234413|ref|NP_001079500.1| protein kinase, interferon-inducible double stranded RNA dependent activator [Xenopus laevis] gi|82176774|sp|Q7ZYA5|PRKAA_XENLA RecName: Full=Interferon-inducible double stranded RNA-dependent protein kinase activator A homolog A gi|27696370|gb|AAH43873.1| Rbpa protein [Xenopus laevis] Length = 309 Score = 75.1 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 V + + + + LQE A K PEY V SGP H FT+ + Sbjct: 106 VTDTLRDPKKPPNQMQENPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF 165 Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222 G SK+ A++VAA ++L + Sbjct: 166 VE-TGSGTSKQVAKRVAAEKLLTK 188 Score = 58.2 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K G P Y + G H+P FT + I + + G SK+ A+Q AA L Sbjct: 42 KTGNHPVYTLEKAEGQAHNPSFTFRLVIGDIT-SLGEGPSKKTAKQKAAEFALN 94 >gi|3334381|sp|Q91836|PRKAB_XENLA RecName: Full=Interferon-inducible double stranded RNA-dependent protein kinase activator A homolog B; AltName: Full=Double-stranded RNA-binding protein A; AltName: Full=XlRBPA gi|214739|gb|AAA49947.1| RNA binding protein [Xenopus laevis] Length = 298 Score = 75.1 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 V + + + + LQE A K PEY V SGP H FT+ + Sbjct: 95 VTDTLRDPKKPPNQMQENPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF 154 Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222 G SK+ A++VAA ++L + Sbjct: 155 VE-TGSGTSKQVAKRVAAEKLLTK 177 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K G P Y + G H+P FT + I + + G SK+ +Q AA L Sbjct: 31 KTGNHPVYTLEKAEGQAHNPSFTFRLVIGDIT-SLGEGPSKKTPKQKAAEFALN 83 >gi|255637537|gb|ACU19095.1| unknown [Glycine max] Length = 359 Score = 75.1 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TP Y+ GP H+P F V ++ + G +++AAEQ Sbjct: 16 FKSRLQEYAQKAGLPTPVYETIKE-GPSHEPSFRSTVIVNDVRYDSLPGF-FNRKAAEQS 73 Query: 215 AAAEVL 220 AA L Sbjct: 74 AAEVAL 79 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 26/63 (41%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y+ P F+ V+I G+ G +K+ AE AA Sbjct: 103 KNLLQEYAQKMNYAMPMYQCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEAEIKAAR 162 Query: 218 EVL 220 L Sbjct: 163 TAL 165 >gi|302672657|ref|XP_003026016.1| hypothetical protein SCHCODRAFT_258995 [Schizophyllum commune H4-8] gi|300099696|gb|EFI91113.1| hypothetical protein SCHCODRAFT_258995 [Schizophyllum commune H4-8] Length = 659 Score = 75.1 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 10/163 (6%) Query: 46 LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 LGD I+ LL L + + K L + L S +A + L + + + Sbjct: 148 LGDAIVSLLAWDYLAEYLPNVKFMSLHILKGDLASNRFLGSLAVKYKLHRSLTLDPGYQL 207 Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA 165 I AD+ E+ + LY D G++ ++ +K ++ + R+ K Sbjct: 208 VDGLDEHKIHADLFEAYVGGLYYDQGLDAVREWLRPIFKAELERAFELRK--K------- 258 Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCS 207 V + + RF V + G+ S Sbjct: 259 QDPGFGEESMMVRYTNDSPWKRRFGRRVRVEEKVGMGVGIGSS 301 >gi|241723276|ref|XP_002413706.1| secreted protein, putative [Ixodes scapularis] gi|215507522|gb|EEC17014.1| secreted protein, putative [Ixodes scapularis] Length = 211 Score = 75.1 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 61/162 (37%), Gaps = 30/162 (18%) Query: 14 GYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHF-----D 64 GY F N ++L KAL H S +++E L+++G +L ++ + Sbjct: 42 GYTFKNPNILLKALLHPSYKARDRKGAADNFEPLDYVGGFVLDYVVGRTRVRRYILMNSP 101 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS------FMTSIQADV 118 + + +S +++ ++ + A + + ++ + + K AD+ Sbjct: 102 NKTQHAMSHAKVAVLRQDSLAYFAVKNNFHKYVFLDRPIEKSSLRDFAEGLRNVHTLADL 161 Query: 119 -------------VESLIAALYLDGGIEVAGTFVDKYWKQRA 147 +S+ A+++D G + V+ + + Sbjct: 162 KFAKKKRSFVYKIFKSVAGAIFVDSGFNI--QEVEPVFLKMI 201 >gi|39965953|ref|XP_365151.1| hypothetical protein [Magnaporthe oryzae 70-15] gi|145015378|gb|EDJ99914.1| predicted protein [Magnaporthe oryzae 70-15] Length = 147 Score = 74.7 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 13/148 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHS------SISH--SYQESYERLEFLGDRILGLLIST 57 ++ +IG+ F N+ L ++ALT + S + + + L +GD IL + + Sbjct: 5 IEGIQTKIGHTFGNQRLCDEALTAAGVTLRMSATSQVHHLDGNAALALIGDGILQIGVG- 63 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L + +GE S R ++VS + + + L + + + +A Sbjct: 64 -LRSRGLGESKGEASDRLKNIVSNKNLASIFDTAQLGPHVIGNPSQW---GAISAKTKAT 119 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQ 145 VVE+L+ A+Y+D GIE A + + Sbjct: 120 VVEALLGAVYVDAGIEAAFAVMRHLQIE 147 >gi|115478498|ref|NP_001062844.1| Os09g0315100 [Oryza sativa Japonica Group] gi|113631077|dbj|BAF24758.1| Os09g0315100 [Oryza sativa Japonica Group] Length = 245 Score = 74.7 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLF 60 + +LE +GY F + LL +ALTH S + Y+RLEFLGD IL L + + Sbjct: 187 IDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYY 244 Score = 51.6 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 57/156 (36%), Gaps = 31/156 (19%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 + F +L +ALT + S E LE LGD L + + LF+ + EG L+ Sbjct: 11 HFFHELQIL-EALTTKKCQEEF--SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKM 67 Query: 75 FNSLVSAETCSQVARELDLASFIR-------------VSSDLRKDV-----------CSF 110 +L+S Q+A +L +I + D R + Sbjct: 68 KKNLISNAALCQLACSSNLVGYIHAEEFNPRDWIIPCLDYDERGNKKISFLAPNGMYSQR 127 Query: 111 MTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKY 142 SI+ AD VE+LI A G + A + Sbjct: 128 KMSIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSL 163 >gi|228469924|ref|ZP_04054860.1| ribonuclease III [Porphyromonas uenonis 60-3] gi|228308469|gb|EEK17267.1| ribonuclease III [Porphyromonas uenonis 60-3] Length = 91 Score = 74.7 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ K+EL EW E+++ HD F V I G +G SK+ A+Q Sbjct: 13 QNYKSELIEWVQKHHLSH-EFRLEEHQTMPHD-HFIYSVWIDGKPVGRGAGSSKKRAQQE 70 Query: 215 AAAEVLK 221 AA + L+ Sbjct: 71 AARDTLE 77 >gi|116785242|gb|ABK23649.1| unknown [Picea sitchensis] Length = 188 Score = 74.7 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 10/140 (7%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L+ +I Y F ++SLL K +TH+S S ++ L LG I+ IS + Sbjct: 39 SIEELQTKIKYQFKDKSLLAKTMTHASFS---LDNNAVLNILGSEIIEAAISFHYLSKNS 95 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + +G+L+ + + + S+ A +L L IRV+ + I +L Sbjct: 96 TISKGDLTSQKAKISNCSALSKDAFDLQLNELIRVAPKVDP----KAQIIVCGCYRALFG 151 Query: 125 ALYLDG-GIEVAGT--FVDK 141 A+ +D ++VA ++ + Sbjct: 152 AIGVDAKSLDVAREKFWIRQ 171 >gi|167555192|ref|NP_001107942.1| interferon-induced, double-stranded RNA-activated protein kinase [Danio rerio] gi|163879058|gb|ABY47905.1| IFN-stimulated dsRNA-activated eIF2-alpha kinase 2 [Danio rerio] gi|164508750|emb|CAM07150.1| double-stranded RNA activated protein kinase [Danio rerio] Length = 682 Score = 74.7 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + + L E+ K T E++ GP H+ RFT+ ++G G +K+ Sbjct: 1 MESLSGNYTSLLNEY-QQKTQCTVEFEEGPTDGPSHNKRFTMRAIVNGQKFPDGTGKTKK 59 Query: 210 AAEQVAAAEVLK 221 A+Q AA L+ Sbjct: 60 EAKQNAAKNALE 71 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 +S + L + K V ++K+ R GP H+P F V + G + + Sbjct: 205 RSSTPDNNYIAYLNNYCQKKKRVY-DFKLVDRIGPPHNPIFVYKVVMDGKEYPEAQGRNA 263 Query: 209 RAAEQVAAAEV 219 + A+Q AA Sbjct: 264 KEAKQNAAQHA 274 >gi|164508752|emb|CAM07151.1| double-stranded RNA activated protein kinase [Danio rerio] Length = 682 Score = 74.7 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + + L E+ K T E++ GP H+ RFT+ ++G G +K+ Sbjct: 1 MESLSGNYTSLLNEY-QQKTQCTVEFEEGPTDGPSHNKRFTMRAIVNGQKFPDGTGKTKK 59 Query: 210 AAEQVAAAEVLK 221 A+Q AA L+ Sbjct: 60 EAKQNAAKNALE 71 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 +S + L + K V ++K+ R GP H+P F V + G + S Sbjct: 205 RSSTPDNNYIAYLNNYCQKKKRVY-DFKLVDRIGPPHNPIFVYKVVMDGKEYPEAQGRSA 263 Query: 209 RAAEQVAAAEV 219 + A+Q AA Sbjct: 264 KEAKQNAAQHA 274 >gi|294464151|gb|ADE77592.1| unknown [Picea sitchensis] Length = 505 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE+A + PEY VT RSGP H P F V+ +G A SK+ AE+ AA Sbjct: 346 YKNFLQEFAQKEGIPFPEY-VTDRSGPSHIPIFKSTVKFAGTTFAGKEANSKKQAEKNAA 404 Query: 217 AEV 219 Sbjct: 405 MAA 407 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVA 215 K LQE A PEYK T R GPDH PRF V +G A + + A+ A Sbjct: 2 FKNRLQEVAQKHCVSLPEYKST-REGPDHAPRFKATVTYNGRAFESPAFCKTAKEAQNAA 60 Query: 216 AAEVLK 221 A L+ Sbjct: 61 AEFALE 66 >gi|15078855|ref|NP_149605.1| 142R [Invertebrate iridescent virus 6] gi|82013395|sp|O55748|RNC_IIV6 RecName: Full=Putative ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|2738432|gb|AAB94459.1| 142R [Invertebrate iridescent virus 6] Length = 292 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 71/230 (30%), Gaps = 39/230 (16%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSVRFNSL 78 A T S + +YE E LGD + I ++ F + ++ Sbjct: 51 YNTAFT--SRGADDKNNYEMFEQLGDVSVNKFIVNYMYKRFPQLRNPNGVDVVAKLKIKY 108 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA------------- 125 S ++ LD+ FI + D R + + D ES A Sbjct: 109 ASKNQLQMLSESLDMWRFITATYDERT---NKKKPLLEDTFESFFGATEWLIDSFIEDIA 165 Query: 126 -------LYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWA--HAKFGVTPEY 175 Y+ G + + + + + + DAKT E +Y Sbjct: 166 LKQGNNNTYVGVGYNIINGILTTLFDRINISLKYENLVDAKTRFNEVIAEQKSIIGDVKY 225 Query: 176 KVTFRSGPDHDPRFT----VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + +++G + ++ G KR A++ AA+ L+ Sbjct: 226 EDEYKNGKHTSKIYRYPPNSNLK---ELLGIGTGTLKRDAQEQAASRALE 272 >gi|222616496|gb|EEE52628.1| hypothetical protein OsJ_34969 [Oryza sativa Japonica Group] Length = 781 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TPEY TF+ GP H+P F V I+ + G +++AAEQ Sbjct: 34 FKSRLQEYAQKTGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQS 91 Query: 215 AAAEVL 220 AA L Sbjct: 92 AAEVAL 97 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 4/64 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE+A P Y T SG F VEI G+ +K+ AE AA Sbjct: 477 KNLLQEYAQKMNYAIPSYICTKSASGLAP---FICTVEIGGIQYIGAAARTKKDAEIKAA 533 Query: 217 AEVL 220 L Sbjct: 534 RTAL 537 >gi|218186287|gb|EEC68714.1| hypothetical protein OsI_37196 [Oryza sativa Indica Group] Length = 2010 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TPEY TF+ GP H+P F V I+ + G +++AAEQ Sbjct: 1269 FKSRLQEYAQKTGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQS 1326 Query: 215 AAAEVL 220 AA L Sbjct: 1327 AAEVAL 1332 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 4/64 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE+A P Y T SG F VEI G+ +K+ AE AA Sbjct: 1706 KNLLQEYAQKMNYAIPSYICTKSASGLAP---FICTVEIGGIQYIGAAARTKKDAEIKAA 1762 Query: 217 AEVL 220 L Sbjct: 1763 RTAL 1766 >gi|115486946|ref|NP_001065960.1| Os12g0109900 [Oryza sativa Japonica Group] gi|122234185|sp|Q0IQN6|DRB8_ORYSJ RecName: Full=Double-stranded RNA-binding protein 8; AltName: Full=dsRNA-binding protein 1; Short=OsDRB1; AltName: Full=dsRNA-binding protein 8 gi|108862090|gb|ABG21849.1| Double-stranded RNA binding motif family protein, expressed [Oryza sativa Japonica Group] gi|113648467|dbj|BAF28979.1| Os12g0109900 [Oryza sativa Japonica Group] Length = 424 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TPEY TF+ GP H+P F V I+ + G +++AAEQ Sbjct: 34 FKSRLQEYAQKTGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQS 91 Query: 215 AAAEVL 220 AA L Sbjct: 92 AAEVAL 97 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 4/64 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE+A P Y T SG F VEI G+ +K+ AE AA Sbjct: 120 KNLLQEYAQKMNYAIPSYICTKSASGLAP---FICTVEIGGIQYIGAAARTKKDAEIKAA 176 Query: 217 AEVL 220 L Sbjct: 177 RTAL 180 >gi|62912408|gb|AAY21792.1| dsRNA binding protein RBP [Oryza sativa Japonica Group] Length = 410 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TPEY TF+ GP H+P F V I+ + G +++AAEQ Sbjct: 34 FKSRLQEYAQKTGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQS 91 Query: 215 AAAEVL 220 AA L Sbjct: 92 AAEVAL 97 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 4/64 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE+A P Y T SG F VEI G+ +K+ AE AA Sbjct: 120 KNLLQEYAQKMNYAIPSYICTKSASGLAP---FICTVEIGGIQYIGAAARTKKDAEIKAA 176 Query: 217 AEVL 220 L Sbjct: 177 RTAL 180 >gi|9229939|dbj|BAB00641.1| dsRNA-binding protein ODB1 [Oryza sativa Japonica Group] Length = 425 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TPEY TF+ GP H+P F V I+ + G +++AAEQ Sbjct: 34 FKSRLQEYAQKTGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQS 91 Query: 215 AAAEVL 220 AA L Sbjct: 92 AAEVAL 97 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 7/66 (10%) Query: 158 KTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQV 214 K LQE+A P Y T SG F TV + +K+ AE Sbjct: 120 KNLLQEYAQKMNYAIPSYICTKSASGLAP---FICTVEIWWEYKYIG-AAARTKKDAEIK 175 Query: 215 AAAEVL 220 AA L Sbjct: 176 AARTAL 181 >gi|321463684|gb|EFX74698.1| hypothetical protein DAPPUDRAFT_251621 [Daphnia pulex] Length = 308 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 37/174 (21%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +EK +GY F + S L A+ + + + + +LE +GDR L L+I + Sbjct: 16 IEKMLGYRFTDESWLHMAIQQPTANVRNAAKEAGKLELIGDRALDLIIVDECESRKPEYG 75 Query: 68 EGELSVRFNSLVSAETCSQVARELDLA-------------------------SFIRVSSD 102 G+L+ ++L T + +A + +L I Sbjct: 76 AGQLTTVKSALTCNNTLAVIAIKKNLHLVMQQKLTSSQETILQAFVDQQIENRHIFTHQK 135 Query: 103 LRKDVCSFM---------TSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145 + + S I AD+ E+++ A+Y D G +E V ++ Sbjct: 136 DVRMIPSPKGDLPWEMDYPKIFADLFEAILGAVYKDSGKDLEKTRKVVLDAMEE 189 >gi|299756084|ref|XP_001829079.2| hypothetical protein CC1G_01759 [Coprinopsis cinerea okayama7#130] gi|298411515|gb|EAU92714.2| hypothetical protein CC1G_01759 [Coprinopsis cinerea okayama7#130] Length = 352 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 6/141 (4%) Query: 18 ANRSLLEKALTHSS------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 +N L+ + THSS S Q ERL +LG +L +++ LLF+ + GE+ Sbjct: 47 SNTDLVLQIFTHSSLRTRLTCSSLDQYDNERLSWLGKHVLDSVVTELLFDTRPMLRAGEI 106 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 R L+ + + L +R LR+ D+ + A +YLD G Sbjct: 107 VERKEELLCDDLFEEWVTHYGLLRKLRYDPVLRESSGITKPQETRDIFYAYTAGVYLDSG 166 Query: 132 IEVAGTFVDKYWKQRALKSGK 152 V ++ Q + Sbjct: 167 APVVREWIQTLLGQNLNIPNR 187 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 A+ V+ EY F SGP H + V ++G+ +G SK+ A++ AA + G Sbjct: 292 TAAQRRVSVEYDAQF-SGPSHAGTWLVRCIVNGIPKGEGTGSSKQNAKEEAARQAYYAMG 350 Query: 225 IWT 227 WT Sbjct: 351 -WT 352 >gi|313224452|emb|CBY20242.1| unnamed protein product [Oikopleura dioica] Length = 2082 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD- 64 L+ + Y F L AL + ++++ERLEFLGD +L L+ L+N Sbjct: 1879 IDELQNELEYTFKTPHLCRLALAKKKYTKDPKDNFERLEFLGDAVLDYLVVDELYNRRSA 1938 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 + G+L+ S+ S +A + L + + KD S M + Sbjct: 1939 ALDSGQLTDLKQSITSNNLFGSLAFCMGLPQSTLMKASAAKDHISCMYKL 1988 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 9/92 (9%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 SLL +ALT + + + + ERLEF GD + + + +L+ + +GEL+ + + Sbjct: 1671 PSLLLRALTQPTANDFF--NLERLEFFGDSFIKIACTRMLYEKYAHFSDGELTSARGAYI 1728 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 S ++ + +R+S + +M Sbjct: 1729 SNANFLKLLK-------LRLSDGSCLQIPRYM 1753 >gi|313212467|emb|CBY36441.1| unnamed protein product [Oikopleura dioica] Length = 2196 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD- 64 L+ + Y F L AL + ++++ERLEFLGD +L L+ L+N Sbjct: 1891 IDELQNELEYTFKTPHLCRLALAKKKYTKDPKDNFERLEFLGDAVLDYLVVDELYNRRSA 1950 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 + G+L+ S+ S +A + L + + KD S M + Sbjct: 1951 ALDSGQLTDLKQSITSNNLFGSLAFCMGLPQSTLMKASAAKDHISCMYKL 2000 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 9/92 (9%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 SLL +ALT + + + + ERLEF GD + + + +L+ + +GEL+ + + Sbjct: 1671 PSLLLRALTQPTANDFF--NLERLEFFGDSFIKIACTRMLYEKYAHFSDGELTSARGAYI 1728 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 S ++ + +R+S + +M Sbjct: 1729 SNANFLKLLK-------LRLSDGSCLQIPRYM 1753 >gi|330889503|gb|EGH22164.1| ribonuclease III [Pseudomonas syringae pv. mori str. 301020] Length = 52 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 3/52 (5%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL 54 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFV 50 >gi|313679612|ref|YP_004057351.1| double-stranded RNA binding domain protein [Oceanithermus profundus DSM 14977] gi|313152327|gb|ADR36178.1| double-stranded RNA binding domain protein [Oceanithermus profundus DSM 14977] Length = 165 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 K+ L + +K P+++ T +G + DP F V ++G A G SKR AE+VA Sbjct: 3 HPKSALNAYCQSKNLPLPKFE-TRGTGTEDDPLFISDVSLNGELLATGQGRSKREAEKVA 61 Query: 216 AAEVLK 221 A L+ Sbjct: 62 AELALE 67 >gi|224067130|ref|XP_002302370.1| predicted protein [Populus trichocarpa] gi|222844096|gb|EEE81643.1| predicted protein [Populus trichocarpa] Length = 355 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TP Y+ GP H+P F V + + G +++AAEQ Sbjct: 16 FKSRLQEYAQKAGLPTPVYETIKE-GPSHEPSFRSTVIVKDVRYDSLPGF-FNRKAAEQS 73 Query: 215 AAAEVL 220 AA L Sbjct: 74 AAEVAL 79 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 24/63 (38%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y+ P F VEI G+ +K+ AE AA Sbjct: 103 KNLLQEYAQKMNYAIPLYECQKDETPGRGLVFKCTVEIGGIRYIGASTKTKKEAEIKAAR 162 Query: 218 EVL 220 L Sbjct: 163 TAL 165 >gi|169763446|ref|XP_001727623.1| 60S ribosomal protein L3 [Aspergillus oryzae RIB40] gi|83770651|dbj|BAE60784.1| unnamed protein product [Aspergillus oryzae] Length = 403 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 85/292 (29%), Gaps = 77/292 (26%) Query: 2 SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + + + L R+ Y + L L ++L +S + + E L LG+ +L S L Sbjct: 81 ESAKLAALHARL-YLPSRLPLETLARSLVDASADSNPNFNNEALATLGNDLLSHYTSEHL 139 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------------DLASFIRVSSDLRK 105 + + + V ++ + +A+E L F RV Sbjct: 140 VCTYPRLPLTVIFAAMYAYVGPKSLAAMAKEWGVEMAAVPGGEVDPGLLQFKRVLPGTDV 199 Query: 106 DVC-------------SFMTSI------------------------------------QA 116 + S+ S+ A Sbjct: 200 NAGPVTGTERPNEHRKSWRKSMTSRVVYDNEYGDPVGVSGESATPESQNTQGVTAEHANA 259 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKFG 170 V +++ A+YL G A F ++++ R L RD L + Sbjct: 260 TFVRAVMGAIYLHAGRPAAKRFFEQHFLSRHLNISDLFNFSQPARD----LSRLCARENF 315 Query: 171 VTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P K+ +G P F V + +G S A AA LK Sbjct: 316 EPPVAKIISETGRKSRHPVFVVGIFSGQDKLGEGAGASLLEARSRAAVAALK 367 >gi|168061835|ref|XP_001782891.1| double-stranded RNA binding protein [Physcomitrella patens subsp. patens] gi|162665613|gb|EDQ52291.1| double-stranded RNA binding protein [Physcomitrella patens subsp. patens] Length = 151 Score = 74.0 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P+YK R G +H F+ VEI+G++ + G SK+ AE AA Sbjct: 85 KNLLQEFAQKHGYPLPQYKSV-RQGEEHSLVFSSTVEIAGVSYSGGCAKSKKEAEIKAAR 143 Query: 218 EVL 220 L Sbjct: 144 TAL 146 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K++LQE+A + ++P Y+ G H+PRF V ++G Sbjct: 2 YKSQLQEYAQKQGLMSPSYEYVKE-GASHEPRFKSTVWVNGRGYESAPGY 50 >gi|321457253|gb|EFX68343.1| hypothetical protein DAPPUDRAFT_114652 [Daphnia pulex] Length = 201 Score = 74.0 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L EW PEY+V +SGP H + + ++S +G+ SK+AA+ AA ++L Sbjct: 135 LLEWRQTTHRPLPEYRVVRKSGPSHSKTYFMTCKLSERV-TEGVGKSKKAAKNDAAEKML 193 Query: 221 K 221 + Sbjct: 194 Q 194 >gi|238489357|ref|XP_002375916.1| 60S ribosomal protein L3 [Aspergillus flavus NRRL3357] gi|220698304|gb|EED54644.1| 60S ribosomal protein L3 [Aspergillus flavus NRRL3357] Length = 403 Score = 74.0 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 85/292 (29%), Gaps = 77/292 (26%) Query: 2 SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + + + L R+ Y + L L ++L +S + + E L LG+ +L S L Sbjct: 81 ESAKLAALHARL-YLPSRLPLETLARSLVDASADSNPNFNNEALATLGNDLLSHYTSEHL 139 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------------DLASFIRVSSDLRK 105 + + + V ++ + +A+E L F RV Sbjct: 140 VCTYPRLPLTVIFAAMYAYVGPKSLAAMAKEWGVEMAAVPGGEVDPGLLQFKRVLPGTDV 199 Query: 106 DVC-------------SFMTSI------------------------------------QA 116 + S+ S+ A Sbjct: 200 NAGPVTGTERPNEHRKSWRKSMTSRVVYDNEYGDPVGVSGESATPESQNTQGVTAEHANA 259 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKFG 170 V +++ A+YL G A F ++++ R L RD L + Sbjct: 260 TFVRAVMGAIYLHAGRPAAKRFFEQHFLSRHLNISDLFNFSQPARD----LSRLCARENF 315 Query: 171 VTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P K+ +G P F V + +G S A AA LK Sbjct: 316 EPPVAKIISETGRKSRHPVFVVGIFSGQDKLGEGAGASLLEARSRAAVAALK 367 >gi|332271595|gb|AEE36483.1| TAR RNA-binding protein isoform 3 [Marsupenaeus japonicus] Length = 296 Score = 74.0 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + LQE A+ P Y++T G H+ F++ I G SK+ Sbjct: 124 DGIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKL 182 Query: 211 AEQVAAAEV 219 A++ AA ++ Sbjct: 183 AKRQAAYKM 191 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE + G++P+Y + G H+P F V + G A G S Sbjct: 27 PVSLLQELC-MRRGISPKYDLLQIEGAVHEPTFVYRVTV-GEFAANGSGQS 75 >gi|332271593|gb|AEE36482.1| TAR RNA-binding protein isoform 2 [Marsupenaeus japonicus] Length = 323 Score = 74.0 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + LQE A+ P Y++T G H+ F++ I G SK+ Sbjct: 124 DGIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKL 182 Query: 211 AEQVAAAEV 219 A++ AA ++ Sbjct: 183 AKRQAAYKM 191 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE + G++P+Y + G H+P F V + G A G S Sbjct: 27 PVSLLQELC-MRRGISPKYDLLQIEGAVHEPTFVYRVTV-GEFAANGSGQS 75 >gi|332271591|gb|AEE36481.1| TAR RNA-binding protein isoform 1 [Marsupenaeus japonicus] Length = 343 Score = 74.0 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + LQE A+ P Y++T G H+ F++ I G SK+ Sbjct: 124 DGIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKL 182 Query: 211 AEQVAAAEV 219 A++ AA ++ Sbjct: 183 AKRQAAYKM 191 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE + G++P+Y + G H+P F V + G A G S Sbjct: 27 PVSLLQELC-MRRGISPKYDLLQIEGAVHEPTFVYRVTV-GEFAANGSGQS 75 >gi|328905029|gb|AEB54790.1| TRBP1 [Litopenaeus vannamei] Length = 343 Score = 74.0 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + LQE A+ P Y++T G H+ F++ I G SK+ Sbjct: 124 DGIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKL 182 Query: 211 AEQVAAAEV 219 A++ AA ++ Sbjct: 183 AKRQAAYKM 191 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE + G++P+Y + G H+P F V + G A G S Sbjct: 27 PVSLLQELC-MRRGISPKYDLLQIEGAVHEPTFVYRVTV-GEFAANGSGQS 75 >gi|195971116|gb|ACG60900.1| TAR RNA-binding protein 2 [Fenneropenaeus chinensis] Length = 343 Score = 74.0 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + LQE A+ P Y++T G H+ F++ I G SK+ Sbjct: 124 DGIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKL 182 Query: 211 AEQVAAAEV 219 A++ AA ++ Sbjct: 183 AKRQAAYKM 191 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE + G++P+Y + G H+P F V + G A G S Sbjct: 27 PVSLLQELC-MRRGISPKYDLLQIEGAVHEPTFVYRVTV-GEFAANGSGQS 75 >gi|225436071|ref|XP_002272355.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 562 Score = 74.0 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 7/77 (9%) Query: 148 LKSGKFRRD----AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 L F+ D K L E A + P+Y+ GP H P F V++ G G Sbjct: 239 LLQDDFQEDDSGFYKNVLLELAQKELFCIPKYETVKC-GPSHMPTFFSTVKVDGE-IFHG 296 Query: 204 M-DCSKRAAEQVAAAEV 219 SK+ AE AA Sbjct: 297 KAGRSKKQAEMKAAKAA 313 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K +LQE + K P Y GPDH P F V ++GL+ + + S + A A Sbjct: 2 YKAKLQELSQQKRWGLPRYTAMK-DGPDHLPHFKASVYVNGLSFHSPTISTSSKQAHNQA 60 Query: 216 AAEV 219 A Sbjct: 61 AKLA 64 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215 K++LQ +A +K P Y + GP H RF V I G + + AE A Sbjct: 173 YKSQLQNYARSKNLDAPLYS-SKCDGPHHALRFKATVTIDGHTFGSPEFFNTLKKAEHAA 231 Query: 216 AAEVL 220 A L Sbjct: 232 AKVAL 236 >gi|221328530|gb|ACM17808.1| TAR RNA-binding protein 2 isoform 3 [Fenneropenaeus chinensis] Length = 296 Score = 74.0 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + LQE A+ P Y++T G H+ F++ I G SK+ Sbjct: 124 DGIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKL 182 Query: 211 AEQVAAAEV 219 A++ AA ++ Sbjct: 183 AKRQAAYKM 191 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE + G++P+Y + G H+P F V + G A G S Sbjct: 27 PVSLLQELC-MRRGISPKYDLLQIEGAVHEPTFVYRVTV-GEFAANGSGQS 75 >gi|221328528|gb|ACM17807.1| TAR RNA-binding protein 2 isoform 2 [Fenneropenaeus chinensis] Length = 323 Score = 74.0 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + LQE A+ P Y++T G H+ F++ I G SK+ Sbjct: 124 DGIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKL 182 Query: 211 AEQVAAAEV 219 A++ AA ++ Sbjct: 183 AKRQAAYKM 191 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE + G++P+Y + G H+P F V + G A G S Sbjct: 27 PVSLLQELC-MRRGISPKYDLLQIEGAVHEPTFVYRVTV-GEFAANGSGQS 75 >gi|242022991|ref|XP_002431920.1| tar RNA binding protein, putative [Pediculus humanus corporis] gi|212517264|gb|EEB19182.1| tar RNA binding protein, putative [Pediculus humanus corporis] Length = 318 Score = 74.0 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE ++ G TP+Y++ G H+P F V ++ A G SK+ A+ AA Sbjct: 6 PVSLLQEML-SRQGTTPKYELVQIEGAIHEPTFRYRVTVADNV-AIGTGRSKKVAKHTAA 63 Query: 217 AEVLKREG 224 +L + Sbjct: 64 KNLLDKLN 71 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 1/73 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 K + LQE P Y++T G H+ +FT+ + G SK+ Sbjct: 99 DKISGNPIGTLQEMCICHRWPPPVYEMTCEEGLPHERQFTMACIVF-KYREVGSGKSKKL 157 Query: 211 AEQVAAAEVLKRE 223 A++ AA ++ ++ Sbjct: 158 AKRQAAHKMWEKL 170 >gi|225543243|ref|NP_001139363.1| dsRNA-activated protein kinase R [Oncorhynchus mykiss] gi|155573866|gb|ABU24345.1| dsRNA-activated protein kinase R [Oncorhynchus mykiss] Length = 758 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 156 DAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + ++L E+A + + +++ GPDH FT+ V I G A G+ +K+ A+Q Sbjct: 5 NYISKLFEYAQRQRQISDIKFEEVGTVGPDHLKTFTLRVVIKGHAYPNGVGKNKKEAKQN 64 Query: 215 AAAEVL 220 AA L Sbjct: 65 AAKHAL 70 Score = 42.8 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + P++K+ +SGP HDP+F V I G+ + Sbjct: 284 YCQKTKRF-PDFKLVEKSGPSHDPQFVYKVLIDQREYPNGLGKT 326 Score = 36.2 bits (83), Expect = 3.8, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 12/64 (18%) Query: 161 LQEWAHAKFGVTPEYKVTFRS--GPDHDPRFTVVV---EISGLAPAQGMDCSKRAAEQVA 215 L E + K + GP++ T + +G +K+ A++ A Sbjct: 156 LNEHSQKNKLSL---KALEETRVGPNN----TSQCCRYVVGEKEYPEGFGNTKKEAKEEA 208 Query: 216 AAEV 219 A +V Sbjct: 209 AMQV 212 >gi|222615377|gb|EEE51509.1| hypothetical protein OsJ_32675 [Oryza sativa Japonica Group] Length = 830 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TPEY TF+ GP H+P F V I+ + G +++AAEQ Sbjct: 34 FKSRLQEYAQKAGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQS 91 Query: 215 AAAEVL 220 AA L Sbjct: 92 AAEVAL 97 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 4/64 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE+A P Y T SG F VEI G+ +K+ AE AA Sbjct: 477 KNLLQEYAQKMNYAIPSYICTKSASGLAP---FICTVEIGGIQYIGAAARTKKDAEIKAA 533 Query: 217 AEVL 220 L Sbjct: 534 RTAL 537 >gi|218186280|gb|EEC68707.1| hypothetical protein OsI_37189 [Oryza sativa Indica Group] Length = 474 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TPEY TF+ GP H+P F V I+ + G +++AAEQ Sbjct: 34 FKSRLQEYAQKAGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQS 91 Query: 215 AAAEVL 220 AA L Sbjct: 92 AAEVAL 97 >gi|115483791|ref|NP_001065557.1| Os11g0109900 [Oryza sativa Japonica Group] gi|122221791|sp|Q0IV63|DRB7_ORYSJ RecName: Full=Double-stranded RNA-binding protein 7; AltName: Full=dsRNA-binding protein 7 gi|108863922|gb|ABG22335.1| Double-stranded RNA binding motif family protein, expressed [Oryza sativa Japonica Group] gi|113644261|dbj|BAF27402.1| Os11g0109900 [Oryza sativa Japonica Group] gi|215686684|dbj|BAG88937.1| unnamed protein product [Oryza sativa Japonica Group] gi|215768461|dbj|BAH00690.1| unnamed protein product [Oryza sativa Japonica Group] Length = 473 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TPEY TF+ GP H+P F V I+ + G +++AAEQ Sbjct: 34 FKSRLQEYAQKAGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQS 91 Query: 215 AAAEVL 220 AA L Sbjct: 92 AAEVAL 97 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 4/64 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE+A P Y T SG F VEI G+ +K+ AE AA Sbjct: 120 KNLLQEYAQKMNYAIPSYICTKSASGLAP---FICTVEIGGIQYIGAAARTKKDAEIKAA 176 Query: 217 AEVL 220 L Sbjct: 177 RTAL 180 >gi|158298694|ref|XP_318876.4| AGAP009781-PA [Anopheles gambiae str. PEST] gi|157014008|gb|EAA14308.5| AGAP009781-PA [Anopheles gambiae str. PEST] Length = 341 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE A+ P Y+ G H+ +FT+ + G SK+ A++ AA + Sbjct: 132 LQEMCMARRLPPPTYETETEEGLPHERQFTIACVVLNYRE-VGEGKSKKIAKRQAAQRMW 190 Query: 221 KRE 223 +R Sbjct: 191 QRL 193 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Query: 145 QRALKSGKFRRDAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + ALKS + KT LQE ++ G+TP+Y + G H+P F V A Sbjct: 3 EEALKSELTTNNMKTPISVLQELL-SRRGITPQYDLIQVEGAVHEPTFRYRVSYQDKD-A 60 Query: 202 QGMD 205 G Sbjct: 61 MGTG 64 >gi|27652061|gb|AAO17549.1| putative bidentate RNase III [Giardia intestinalis] Length = 627 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 14/134 (10%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALT Y++LE LGD L ++ L + EG L+ S Sbjct: 506 IRLLQIALT--------PHVYQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAE 557 Query: 80 SAETCSQVARELD--LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 + ++ + ++ I + + D E+++AA+ L G E AG Sbjct: 558 TNSVLGRLTKRFPSVVSEVII----ESHPKIQPDSKVYGDTFEAILAAILLACGEEAAGA 613 Query: 138 FVDKYWKQRALKSG 151 FV ++ + + Sbjct: 614 FVREHVLPQVVADA 627 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 6/111 (5%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 S+ + ++RLE LGD +LG +++ L F A G L LV E + + + L Sbjct: 197 FGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTL 256 Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVDK 141 L S++L + AD+ E ++ +++ GI F+ K Sbjct: 257 GLPQLAEFSNNLVA-----KSKTWADMYEEIVGSIFTGPNGIYGCEEFLAK 302 >gi|88192985|pdb|2FFL|A Chain A, Crystal Structure Of Dicer From Giardia Intestinalis gi|88192986|pdb|2FFL|B Chain B, Crystal Structure Of Dicer From Giardia Intestinalis gi|88192987|pdb|2FFL|C Chain C, Crystal Structure Of Dicer From Giardia Intestinalis gi|88192988|pdb|2FFL|D Chain D, Crystal Structure Of Dicer From Giardia Intestinalis gi|158430470|pdb|2QVW|A Chain A, Structure Of Giardia Dicer Refined Against Twinned Data gi|158430471|pdb|2QVW|B Chain B, Structure Of Giardia Dicer Refined Against Twinned Data gi|158430472|pdb|2QVW|C Chain C, Structure Of Giardia Dicer Refined Against Twinned Data gi|158430473|pdb|2QVW|D Chain D, Structure Of Giardia Dicer Refined Against Twinned Data Length = 756 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 14/134 (10%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALT Y++LE LGD L ++ L + EG L+ S Sbjct: 635 IRLLQIALT--------PHVYQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAE 686 Query: 80 SAETCSQVARELD--LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 + ++ + ++ I + + D E+++AA+ L G E AG Sbjct: 687 TNSVLGRLTKRFPSVVSEVII----ESHPKIQPDSKVYGDTFEAILAAILLACGEEAAGA 742 Query: 138 FVDKYWKQRALKSG 151 FV ++ + + Sbjct: 743 FVREHVLPQVVADA 756 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 6/111 (5%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 S+ + ++RLE LGD +LG +++ L F A G L LV E + + + L Sbjct: 326 FGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTL 385 Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVDK 141 L S++L + AD+ E ++ +++ GI F+ K Sbjct: 386 GLPQLAEFSNNLVA-----KSKTWADMYEEIVGSIFTGPNGIYGCEEFLAK 431 >gi|159110564|ref|XP_001705536.1| Dicer [Giardia lamblia ATCC 50803] gi|229485333|sp|A8BQJ3|DCL_GIAIC RecName: Full=Endoribonuclease Dicer-like gi|157433622|gb|EDO77862.1| Dicer [Giardia lamblia ATCC 50803] Length = 754 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 14/134 (10%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALT Y++LE LGD L ++ L + EG L+ S Sbjct: 633 IRLLQIALT--------PHVYQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAE 684 Query: 80 SAETCSQVARELD--LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 + ++ + ++ I + + D E+++AA+ L G E AG Sbjct: 685 TNSVLGRLTKRFPSVVSEVII----ESHPKIQPDSKVYGDTFEAILAAILLACGEEAAGA 740 Query: 138 FVDKYWKQRALKSG 151 FV ++ + + Sbjct: 741 FVREHVLPQVVADA 754 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 6/111 (5%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 S+ + ++RLE LGD +LG +++ L F A G L LV E + + + L Sbjct: 324 FGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTL 383 Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVDK 141 L S++L + AD+ E ++ +++ GI F+ K Sbjct: 384 GLPQLAEFSNNLVA-----KSKTWADMYEEIVGSIFTGPNGIYGCEEFLAK 429 >gi|50548505|ref|XP_501722.1| YALI0C11429p [Yarrowia lipolytica] gi|49647589|emb|CAG82032.1| YALI0C11429p [Yarrowia lipolytica] Length = 467 Score = 73.2 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 45/285 (15%), Positives = 79/285 (27%), Gaps = 94/285 (32%) Query: 16 AFANRSLLEKALTHSS--------------------ISHSYQESYERLEFLGDRILGLLI 55 + L ++ TH S + SYERLEF+GD I+ ++ Sbjct: 146 EIKDGMLFKRVFTHRSMLLGDTGTASEVHKTATKAGYDQTGNFSYERLEFVGDSIVNNIL 205 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------- 98 + ++++ F + LS +++ + A S +R Sbjct: 206 TKIIYDVFPGDDQSHLSFLRGQVIANIVLCRWAAIYGFPSKLRVASSVLSPEQLHILTVS 265 Query: 99 ------VSSDLRKDVCSF----------------------------MTSIQADVVESLIA 124 + +D + + I AD+ E+ +A Sbjct: 266 ILSPRTLGADANMWLVKYTFPGGYAAEYEKWYKSLEVKPKIDEALCGRKIVADLFEAYVA 325 Query: 125 ALYLDGG-----------IEVAGTFVDKYWKQ--------RALKSGKFRRD--AKTELQE 163 +YL G E+A +D ++ K D AK L Sbjct: 326 GVYLSYGADGEAVLTKWVYELAQPLLDAIRQEGGSISSMAEQQHGMKKPFDGTAKNRL-Y 384 Query: 164 WAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCS 207 + P Y V PD TV + G + Sbjct: 385 ILIGSASLAPVYNVVNEEKYPDGSVMHTVTCSMGTEILGTGKGKN 429 >gi|189198173|ref|XP_001935424.1| 60S ribosomal protein L3 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187981372|gb|EDU47998.1| 60S ribosomal protein L3 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 444 Score = 73.2 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 79/278 (28%), Gaps = 61/278 (21%) Query: 3 ALRYSTLEKRIGY--AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +++ L R+ F +L + L H S + + L LG ++LG S L Sbjct: 132 SIKLHALRSRLSLPERFP-LQVLARTLVHPSADANPAFNNASLSILGRQLLGYYTSEWLI 190 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLA--------------SFIRVSSDLR-- 104 + + + + + + VARE + F R+ + Sbjct: 191 CTYPRLPMEVVFAAVEAYIGPKALATVAREWGIEAAAEPGGEVDPGLLQFKRIGAGEELP 250 Query: 105 ---------KDVCSFMTSIQADV----------------------------VESLIAALY 127 K + I V +LI AL+ Sbjct: 251 EALRRQVPWKWNVTTTHKILKSDAFGSNNAGPSPHALEKTPVPVEEAAQSFVRALIGALH 310 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE---LQEWAHAKFGVTPEYKVTFRSGP- 183 + G + F ++ R L D +T L + P ++ +G Sbjct: 311 VHLGSPLVKRFFRDHFLSRHLDISTIF-DFRTPTRDLSWLCRREGFEPPVARLISETGRL 369 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P F V V + S A A+A LK Sbjct: 370 SRHPVFVVGVYSGRDKLGEASGSSLNEARIRASAAALK 407 >gi|328779214|ref|XP_001121349.2| PREDICTED: probable RISC-loading complex subunit BRAFLDRAFT_242885 [Apis mellifera] Length = 337 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + +A LQ+ P+Y+ GP H FT+ E++ L G+ + Sbjct: 101 IPPDIPFVNAVGALQDLCVENNLQDPKYQQISDVGPPHAKIFTIECEVATLKE-IGVAKT 159 Query: 208 KRAAEQVAAAEVLKRE 223 K+ A+Q AA ++L + Sbjct: 160 KKQAKQEAAKKMLDKL 175 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE K +TP Y++ G H F V+ L A G+ SK+ A+ AA Sbjct: 5 PVSILQEMM-VKNKITPNYELIHDGGGSHMNVFAYQVKCDDL-IASGIGRSKKDAKHEAA 62 Query: 217 AEVLK 221 +L+ Sbjct: 63 KAMLE 67 >gi|18391056|ref|NP_563850.1| HYL1 (HYPONASTIC LEAVES 1); double-stranded RNA binding / miRNA binding / protein binding [Arabidopsis thaliana] gi|75218980|sp|O04492|DRB1_ARATH RecName: Full=Double-stranded RNA-binding protein 1; AltName: Full=Protein HYPONASTIC LEAVES 1; AltName: Full=dsRNA-binding protein 1; Short=AtDRB1 gi|12247457|gb|AAG49890.1|AF276440_1 hyponastic leave 1 [Arabidopsis thaliana] gi|2160163|gb|AAB60726.1| F21M12.9 gene product [Arabidopsis thaliana] gi|15451102|gb|AAK96822.1| Unknown protein [Arabidopsis thaliana] gi|20148393|gb|AAM10087.1| unknown protein [Arabidopsis thaliana] gi|332190360|gb|AEE28481.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana] Length = 419 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TP Y++ GP H F V + G+ G +++AAEQ Sbjct: 16 FKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGVRYNSLPGF-FNRKAAEQS 73 Query: 215 AAAEVLKRE 223 AA L+ Sbjct: 74 AAEVALREL 82 Score = 51.6 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 24/63 (38%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y+ +FT VEI G+ +K+ AE A Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGR 162 Query: 218 EVL 220 L Sbjct: 163 TAL 165 >gi|126326680|ref|XP_001377363.1| PREDICTED: similar to protein activator of the interferon-induced protein kinase [Monodelphis domestica] Length = 520 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 16/133 (12%) Query: 93 LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 + I K + E+ I ++ + A K Sbjct: 279 IGDIICTGEGSSKKMAKHK------AAEAAIG------HLKANASLCFAVPDPTAPDPSK 326 Query: 153 FRRD---AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 ++ LQE A PEY ++ GP H FT + + G SK+ Sbjct: 327 QPKNQANPIGSLQELAIQHGWRLPEYTLSQEGGPAHKKEFTTICRLESFIE-TGKGASKK 385 Query: 210 AAEQVAAAEVLKR 222 A++ AA + L + Sbjct: 386 QAKRNAAEKFLAK 398 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ V P Y+ G + P FT V I + G SK+ A+ Sbjct: 240 KTPIQVLHEYGMKTNNV-PVYEFERADGHANTPSFTFRVTIGDI-ICTGEGSSKKMAKHK 297 Query: 215 AAAEVL 220 AA + Sbjct: 298 AAEAAI 303 >gi|225714608|gb|ACO13150.1| Interferon-inducible double stranded RNA-dependent protein kinase activator A homolog [Lepeophtheirus salmonis] Length = 334 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + ELQE + P Y+V+ G H+ F +V + G SK+ Sbjct: 117 DGIPGNPVGELQELCMNRRMQPPTYEVSREEGQPHERSFVLVCIVGSKYRESGNGKSKKL 176 Query: 211 AEQVAAAEVLKRE 223 A++ AA ++L + Sbjct: 177 AKRQAAYKMLTKL 189 Score = 43.9 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + LQE + + G+TP+Y + G H+P F V + A G Sbjct: 22 PVSFLQEL-YVRKGITPKYDLVQIEGAVHEPTFKYRVAVGD-VLATGSG 68 >gi|45686033|ref|YP_003796.1| RNase III [Ambystoma tigrinum virus] gi|37722457|gb|AAP33202.1| RNase III [Ambystoma tigrinum stebbensi virus] Length = 373 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 78/222 (35%), Gaps = 27/222 (12%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG----ELSVRF 75 R L K T +++ ++YE LE +GD + + F ++ Sbjct: 25 RDLWNKVFTPKNVNPD--DNYEALEIVGDGVASYFFPSYFLKRFPQLNNPKGVKTVARLK 82 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA--------LY 127 S ++ S +A L FIR S S S+ D E+ + A Sbjct: 83 IYYGSKKSFSSIADSLGFWKFIR--SGPVPVNPSTRESLLEDTFEAFLGAVCTAVDDEYS 140 Query: 128 LDG-GIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +DG G VA + + + D T L+E K V V G Sbjct: 141 IDGLGAVVAYKIMADIFDDMDISLEYTALFDTVTRLKELMDVKKDVLGGDAVYDHRGD-- 198 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRA-AEQVA--AAEVLKREG 224 T V+ + G + KR A++ A A ++L+REG Sbjct: 199 ----TTVITLKGRVIGKATGAIKRDRAKEAAGQALDLLRREG 236 >gi|307006603|gb|ADN23586.1| endonuclease [Hyalomma marginatum rufipes] Length = 195 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 25/161 (15%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFDS 65 E+ GY F ++S L +AL H + S + + + L+++GD +L +IS L H Sbjct: 23 ERLGGYQFKSKSTLLRALLHRTYKQSKRPNNKTFCDPLDYVGDYVLKFIISQYLLEHCAV 82 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLA---------------SFIRVSSDLRK----D 106 + +L+ R + E + +A +I+ D++ Sbjct: 83 KTKEQLAQRRALVECQEVYALLAVRNGFHEAVFIDDRRDWEHLNEYIKNVKDVQTLKQPS 142 Query: 107 VCSFMTSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQ 145 + +S+ A+Y+D G + K Sbjct: 143 SVEKRRCFIQNFFQSVAGAVYVDSGYDLRAVERVFLPMLKP 183 >gi|226355144|ref|YP_002784884.1| hypothetical protein Deide_03100 [Deinococcus deserti VCD115] gi|226317134|gb|ACO45130.1| Conserved hypothetical protein [Deinococcus deserti VCD115] Length = 135 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 +AK +L P ++V GP H+ F VV + G G SK+ AE++ Sbjct: 1 MNAKGDLIARLVTLGRAAPVFEV-ETHGPAHERLFRAVVMVDGQQLGSGEGRSKKDAERL 59 Query: 215 AAAEVLKREG 224 AA E L+ G Sbjct: 60 AAEEALQALG 69 >gi|6323666|ref|NP_013737.1| Mrpl3p [Saccharomyces cerevisiae S288c] gi|1350789|sp|P36516|RM03_YEAST RecName: Full=54S ribosomal protein L3, mitochondrial; AltName: Full=YmL3; Flags: Precursor gi|798935|emb|CAA89127.1| Mrlp3p [Saccharomyces cerevisiae] gi|51013573|gb|AAT93080.1| YMR024W [Saccharomyces cerevisiae] gi|151946185|gb|EDN64416.1| YmL30 [Saccharomyces cerevisiae YJM789] gi|190408263|gb|EDV11528.1| 60S ribosomal protein L3, mitochondrial precursor [Saccharomyces cerevisiae RM11-1a] gi|256273471|gb|EEU08405.1| Mrpl3p [Saccharomyces cerevisiae JAY291] gi|259148602|emb|CAY81847.1| Mrpl3p [Saccharomyces cerevisiae EC1118] gi|285814027|tpg|DAA09922.1| TPA: Mrpl3p [Saccharomyces cerevisiae S288c] Length = 390 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 69/220 (31%), Gaps = 37/220 (16%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD------ 92 L +G +L ++ + + L+ N+ +S + +A+ Sbjct: 151 DNHGLNIMGKNLLSYHVTKSIIQKYPRLPTVVLNAAVNAYISEAVLAHIAKYWGIEVETT 210 Query: 93 --LASFIRVSSDLRKDVCSFM----------------------TSIQADVVESLIAALYL 128 L+ ++++ + TS A V S+IAA++ Sbjct: 211 SVLSRYLKM-EPFEFTLGRLKFFNNSLNSKDGIELITGKNFSETSALAMSVRSIIAAIWA 269 Query: 129 ---DGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + F+D + R L K + EL + P K+ SG Sbjct: 270 VTEQKDSQAVYRFIDDHIMSRKLDITKMFQFEQPTRELAMLCRREGLEKPVSKLVAESGR 329 Query: 184 -DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F V V +G S + A+ AA + L + Sbjct: 330 LSKSPVFIVHVFSGEETLGEGYGSSLKEAKARAATDALMK 369 >gi|323303562|gb|EGA57353.1| Mrpl3p [Saccharomyces cerevisiae FostersB] Length = 390 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 69/220 (31%), Gaps = 37/220 (16%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD------ 92 L +G +L ++ + + L+ N+ +S + +A+ Sbjct: 151 DNHGLNIMGKNLLSYHVTKSIIQKYPRLPTVVLNAAVNAYISEAVLAHIAKYWGIEVETT 210 Query: 93 --LASFIRVSSDLRKDVCSFM----------------------TSIQADVVESLIAALYL 128 L+ ++++ + TS A V S+IAA++ Sbjct: 211 SVLSRYLKM-EPFEFTLGRLKFFNNSLNSKDGIELITGKNFSETSALAMSVRSIIAAIWA 269 Query: 129 ---DGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + F+D + R L K + EL + P K+ SG Sbjct: 270 VTEQKDSQAVYRFIDDHIMSRKLDITKMFQFEQPTRELAMLCRREGLEKPVSKLVAESGR 329 Query: 184 -DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F V V +G S + A+ AA + L + Sbjct: 330 LSKSPVFIVHVFSGEETLGEGYGSSLKEAKARAATDALMK 369 >gi|330982830|gb|EGH80933.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 49 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGL 53 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNF 49 >gi|323336239|gb|EGA77510.1| Mrpl3p [Saccharomyces cerevisiae Vin13] Length = 390 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 69/220 (31%), Gaps = 37/220 (16%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD------ 92 L +G +L ++ + + L+ N+ +S + +A+ Sbjct: 151 DNHGLNIMGKNLLSYHVTKSIIQKYPRLPTVVLNAAVNAYISEAVLAHIAKYWGIEVETT 210 Query: 93 --LASFIRVSSDLRKDVCSFM----------------------TSIQADVVESLIAALYL 128 L+ ++++ + TS A V S+IAA++ Sbjct: 211 SVLSRYLKM-EPFEFTLGRLKFFNNSLNSKDGIELITGKNFSETSALAMSVRSIIAAIWA 269 Query: 129 ---DGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + F+D + R L K + EL + P K+ SG Sbjct: 270 VTEQKDSQAVYRFIDDHIMSRKLDITKMFQFEQPTRELAMLCRREGLEKPVSKLVAESGR 329 Query: 184 -DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F V V +G S + A+ AA + L + Sbjct: 330 LSKSPVFIVHVFSGEETLGEGYGSSLKEAKARAATDALMK 369 >gi|323332013|gb|EGA73424.1| Mrpl3p [Saccharomyces cerevisiae AWRI796] Length = 390 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 69/220 (31%), Gaps = 37/220 (16%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD------ 92 L +G +L ++ + + L+ N+ +S + +A+ Sbjct: 151 DNHGLTIMGKNLLSYHVTKSIIQKYPRLPTVVLNAAVNAYISEAVLAHIAKYWGIEVETT 210 Query: 93 --LASFIRVSSDLRKDVCSFM----------------------TSIQADVVESLIAALYL 128 L+ ++++ + TS A V S+IAA++ Sbjct: 211 SVLSRYLKM-EPFEFTLGRLKFFNNSLNSKDGIELITGKNFSETSALAMSVRSIIAAIWA 269 Query: 129 ---DGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + F+D + R L K + EL + P K+ SG Sbjct: 270 VTEQKDSQAVYRFIDDHIMSRKLDITKMFQFEQPTRELAMLCRREGLEKPVSKLVAESGR 329 Query: 184 -DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F V V +G S + A+ AA + L + Sbjct: 330 LSKSPVFIVHVFSGEETLGEGYGSSLKEAKARAATDALMK 369 >gi|50511727|gb|AAT77416.1| dsRNA-binding protein LH1 [Brassica oleracea var. capitata] Length = 283 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TP Y+ GP H P F V ++ + G +++AAEQ Sbjct: 16 FKSRLQEYAQRYKLPTPLYETIKE-GPSHKPLFQSTVIVNDVRYDSLPGF-FNRKAAEQS 73 Query: 215 AAAEVLKRE 223 AA L+ Sbjct: 74 AAEVALQEL 82 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 24/63 (38%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+ P Y+ P+FT VEI G+ +K+ AE A Sbjct: 103 KNLLQEYTQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGR 162 Query: 218 EVL 220 L Sbjct: 163 TAL 165 >gi|224125924|ref|XP_002319709.1| predicted protein [Populus trichocarpa] gi|222858085|gb|EEE95632.1| predicted protein [Populus trichocarpa] Length = 240 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215 K LQE A + P Y T +SG H P F VEI G G +K+ AE A Sbjct: 172 YKNLLQELAQREGCGLPTYS-TNKSGEAHVPTFISTVEIEGE-IFTGQGAKTKKQAEMSA 229 Query: 216 AAEV 219 A Sbjct: 230 AKTA 233 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA--QGMDCSKRAAEQV 214 K++LQE + P Y+ + R G H+PRF V ++ ++ + SK+ A+ Sbjct: 2 YKSKLQELCQQRAWELPTYE-SSRQGQAHNPRFLATVTVNNISFHSPSPSNTSKK-AQND 59 Query: 215 AAAEVLK 221 AA + Sbjct: 60 AAKLAYE 66 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 K++LQ +A + P Y R GP H RF V ++G Sbjct: 88 FKSQLQTYAQKRNFALPVYSC-ERVGPPHSSRFKCKVTVNGQ 128 >gi|198415842|ref|XP_002129369.1| PREDICTED: similar to TAR (HIV) RNA binding protein 2 [Ciona intestinalis] Length = 326 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + + LQE+ K TP+Y +T G H P+F + A G Sbjct: 10 EDLQNESQTFKTPVSTLQEYCQ-KLSKTPQYDLTALEGRAHQPQFVYRCMVGD-VTATGQ 67 Query: 205 DCSKRAAEQVAAAEVLK 221 SK+ A+ AA VLK Sbjct: 68 GGSKKIAKHAAAEAVLK 84 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE A+ PEY + +GP H F + + G +K+ A+++A Sbjct: 115 NPVGSLQELVVARGWRLPEYALAHETGPAHKKEFIICCTVESFKE-YGSGSAKKHAKRLA 173 Query: 216 AAEVLKR 222 AA + + Sbjct: 174 AANMFTK 180 >gi|119495412|ref|XP_001264491.1| 60S ribosomal protein L3 [Neosartorya fischeri NRRL 181] gi|119412653|gb|EAW22594.1| 60S ribosomal protein L3 [Neosartorya fischeri NRRL 181] Length = 406 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 56/295 (18%), Positives = 84/295 (28%), Gaps = 80/295 (27%) Query: 2 SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + + + L R+ Y + L L +AL SS + + E L LG +L S L Sbjct: 81 ESAKLAALHARL-YLPSRLPLETLARALVDSSADPNPDFNNESLATLGHDLLTNYTSEHL 139 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------------DLASFIRVSSD--- 102 + + + V +T S +ARE L F RVS Sbjct: 140 ICTYPRLPLTVIFAAMYAYVGPKTLSAMAREWGVEMAVAPGGEVDPGLLQFRRVSPGTDL 199 Query: 103 ----------LRKDVCSFMTSI-------------------------------------- 114 S+ SI Sbjct: 200 NAEPVTGTARPNDHRKSWRKSITSRVVYDNEFGDPVKEVADSAAQAVAESHDAQGVTAEQ 259 Query: 115 -QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHA 167 A V +++ A+YL G A F +++ R L + RD L Sbjct: 260 ASATFVRAVMGAIYLHAGRPAAKRFFEQHILSRHLNISELFNFSQPARD----LTRLCAR 315 Query: 168 KFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + P K+ +G P F V + +G S A AA LK Sbjct: 316 ENFERPVAKIISETGRKSRHPVFVVGIYSGQDKLGEGAGASLMEARSRAAVAALK 370 >gi|302916425|ref|XP_003052023.1| hypothetical protein NECHADRAFT_78781 [Nectria haematococca mpVI 77-13-4] gi|256732962|gb|EEU46310.1| hypothetical protein NECHADRAFT_78781 [Nectria haematococca mpVI 77-13-4] Length = 320 Score = 72.4 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 15/134 (11%) Query: 23 LEKA-LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF-DSAKEGELSVRFNSLVS 80 LE A H I + +YE LE+ GD L + + L+ F + G LS LV Sbjct: 59 LETAVFRHPGIGYG--PNYEILEWFGDAALETISTDLVMQTFENHLTVGRLSQLREQLVR 116 Query: 81 AETCSQVARELDLASFIRVSSD------LRKDVCSFMT--SIQADVVESLIAALYLD--- 129 T ++ R+ + ++ +D L + IQ D+ E+ + A+ Sbjct: 117 NVTLAEYYRQYEFHKRTQLPADMGTMEQLMRTKPRDRDVIKIQGDIFEAYVGAIIRADPV 176 Query: 130 GGIEVAGTFVDKYW 143 G A ++ W Sbjct: 177 QGRTNAAAWLKALW 190 >gi|157088318|gb|ABV21735.1| dsRNA-dependent protein kinase [Paralichthys olivaceus] Length = 688 Score = 72.4 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + +L E+A + Y+ GPDH FT+ ++ G +K+ A Q A Sbjct: 5 NYVAKLNEYAQ-RSRSVLRYEDVGADGPDHIKTFTIRAIVNNKVFPDGTGNNKKEARQNA 63 Query: 216 AAEVLK 221 A L+ Sbjct: 64 AQNALR 69 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 1/87 (1%) Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 E ++ + +L + L ++ +Y + R G H+P+F Sbjct: 191 EAKQDVIEICDRTNSLSLKTEGGNYIGILNQYCQKTKRSH-DYVLEKRCGQAHNPQFFYK 249 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEV 219 + I+ G + + A+Q AA Sbjct: 250 LVINNKEYPVGEGKTVKEAKQNAAQLA 276 >gi|328766179|gb|EGF76236.1| hypothetical protein BATDEDRAFT_28693 [Batrachochytrium dendrobatidis JAM81] Length = 334 Score = 72.4 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 86/240 (35%), Gaps = 53/240 (22%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S + ++RLEFLGD +L L+ L+ G LS LV + + V+ + Sbjct: 6 SGTGKLGSIFQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQ 65 Query: 91 LDLASFIRV--------------------------------------SSDLRKDVCSFMT 112 + L +IR S+ L + + Sbjct: 66 IGLVKYIRHTDMTMEAAIGRFAAWVQGYLASESSTSLPISTSATQIASARLFWNKGNTAP 125 Query: 113 SIQADVVESLIAALYLDGGIEVAG-------TFVDKYWKQRALKSGKFRR---DAKTELQ 162 DV ES++ A+++D ++ T + +W + G + EL+ Sbjct: 126 KTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELR 185 Query: 163 EWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +++ F V +Y T+ G H T + + AQ + +R A++ AA ++ Sbjct: 186 TLSYSLFKCVKIDY--TYEYGL-HGGT-TATITYHNMVLAQCLGTGQRDAKKAAACTAVE 241 >gi|307182700|gb|EFN69824.1| Interferon-inducible double stranded RNA-dependent protein kinase activator A-like protein [Camponotus floridanus] Length = 364 Score = 72.4 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 156 DAKTELQEWA--HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + LQE+ YKV GPDH FT+ V I G +G K+ A+Q Sbjct: 112 NYVGLLQEFCVQQELLASNIVYKVVDERGPDHMKMFTIEVSI-GSICEKGSASCKKIAKQ 170 Query: 214 VAAAEVLKRE 223 AA +L+ Sbjct: 171 EAAKNLLQHL 180 Score = 44.3 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + + LQE +K G P Y RF V+ A+G SK+ A+ Sbjct: 1 MSKSPISLLQELG-SKQGYVPIYNYVSVKKVGIYDRFVCRVDCKEFN-AEGEGNSKKDAK 58 Query: 213 QVAAAEVL 220 AA ++L Sbjct: 59 HNAAEKML 66 >gi|169841632|ref|ZP_02874745.1| hypothetical protein cdivTM_31055 [candidate division TM7 single-cell isolate TM7a] Length = 77 Score = 72.4 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 34/75 (45%) Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 + + + ++S S +A EL+L ++ +S+ SI D E+LI A++ D Sbjct: 1 MHLPKSQIISEPVFSTIASELELGEYLYLSNGEVMSGGRHRRSILGDAFEALIGAIFKDS 60 Query: 131 GIEVAGTFVDKYWKQ 145 A K++ + Sbjct: 61 DYYTAKNIALKFYLE 75 >gi|307776250|pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For The First Dsrbd Of Protein Hyl1 Length = 103 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TP Y++ GP H F V + G+ G +++AAEQ Sbjct: 19 FKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGVRYNSLPGF-FNRKAAEQS 76 Query: 215 AAAEVLKRE 223 AA L+ Sbjct: 77 AAEVALREL 85 >gi|9967526|emb|CAC05659.1| RBP2 protein [Brassica oleracea var. capitata] Length = 283 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TP Y+ GP H F V + G+ G +++AAEQ Sbjct: 16 FKSRLQEYAQKYKLPTPIYETVKE-GPSHKSLFQSTVIVDGVRYDSLPGF-FNRKAAEQS 73 Query: 215 AAAEVLKRE 223 AA L+ Sbjct: 74 AAEVALQEL 82 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 25/63 (39%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y+ P+FT VEI G+ +K+ AE A Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGR 162 Query: 218 EVL 220 L Sbjct: 163 TAL 165 >gi|328951087|ref|YP_004368422.1| double-stranded RNA binding domain protein [Marinithermus hydrothermalis DSM 14884] gi|328451411|gb|AEB12312.1| double-stranded RNA binding domain protein [Marinithermus hydrothermalis DSM 14884] Length = 158 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 K+ L + K PE+ T +GP+HDP F V ++G A G +KR AE++A Sbjct: 3 HPKSALIAYCRTKGLAGPEFD-TRGTGPEHDPLFISDVMVNGTVVATGQGRTKREAERIA 61 Query: 216 AAEVLKRE 223 A + Sbjct: 62 AELAYEAL 69 >gi|46121645|ref|XP_385377.1| hypothetical protein FG05201.1 [Gibberella zeae PH-1] Length = 331 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 83/263 (31%), Gaps = 60/263 (22%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L + H + ++E+LE+ GD L ++ + +F F G S L Sbjct: 48 NPDLEAQVFRHPGLG---GPNWEKLEWYGDATLEMISTEFIFETFPHLPSGRCSQIREQL 104 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKD--------VCSFMTSIQADVVESLIAALYLD- 129 V T + RE + ++ D+ K + +Q DV E+ + A+ Sbjct: 105 VRNVTLAGYYREYGMEHKTQLPIDVGKMTVLLQTQKNNKDVIKLQGDVFEAYVGAVVKSH 164 Query: 130 -GGIEVAGTFVDKYW-------------------------------------KQRALKSG 151 G A ++ W + A Sbjct: 165 PQGNANAVAWLKMLWGRTIKGQIQQAESYREIIAQAQPIITQQSPTMQEQSTQPEAKAVE 224 Query: 152 KF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD---PRFTVVVEISG-----LAPAQ 202 ++AK L A GV Y+ D D P F + V + G A Sbjct: 225 PLTEQNAKARLSTAI-AVPGVKLRYEDMPCKRKDRDTGLPLFAIGVYLDGWGETNKQLAF 283 Query: 203 GMDCSKRAAEQVAAAEVLKREGI 225 G+ K A AA +VLK E + Sbjct: 284 GVAKRKAEAGGKAALQVLKNEKV 306 >gi|297692032|ref|XP_002823375.1| PREDICTED: RISC-loading complex subunit TARBP2-like [Pongo abelii] Length = 369 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E K PEY VT SGP H FT+ + G SK+ A++ AAA++L R Sbjct: 169 ELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVEHFIE-IGSGTSKKLAKRNAAAKMLLR 227 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 2/67 (2%) Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + + + + LQE+ + G TP Y + G H P FT V + Sbjct: 15 RLPSIEQMLAANPGKTPISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TS 72 Query: 201 AQGMDCS 207 G S Sbjct: 73 CTGQGPS 79 >gi|224084552|ref|XP_002307335.1| predicted protein [Populus trichocarpa] gi|222856784|gb|EEE94331.1| predicted protein [Populus trichocarpa] Length = 213 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TP Y+ GP H+P F V + + G +++AAEQ Sbjct: 9 FKSRLQEYAQKAGLPTPVYETIKE-GPSHEPSFRSTVIVKEVRYDSLPGF-FNRKAAEQS 66 Query: 215 AAAEVL 220 AA L Sbjct: 67 AAEVAL 72 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 24/63 (38%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y+ P F VEI G+ +K+ AE AA Sbjct: 96 KNLLQEYAQKMNYAIPLYECQKDETPGRGLVFKCTVEIGGIRYIGASAKTKKEAEIKAAR 155 Query: 218 EVL 220 L Sbjct: 156 TAL 158 >gi|290760511|gb|ADD59808.1| dsRNA-specific ribonuclease RNase III [Periwinkle leaf yellowing phytoplasma] Length = 112 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 2/81 (2%) Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 LD G A L + D KT+LQE ++ T +YK+ GP H Sbjct: 1 LDLGYLTAKKVFHNIVLPH-LAKTIYIIDFKTQLQEIVQSEKK-TIQYKIVQEQGPAHSK 58 Query: 188 RFTVVVEISGLAPAQGMDCSK 208 F V + G +K Sbjct: 59 NFVAEVYLEKNLLGTGEGSTK 79 >gi|50511733|gb|AAT77419.1| dsRNA-binding protein LH2-o [Brassica napus] Length = 277 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TP Y+ GP H F V + G+ G +++AAEQ Sbjct: 16 FKSRLQEYAQKYKLPTPIYETVKE-GPSHKSLFQSTVIVDGVRYDSLPGF-FNRKAAEQS 73 Query: 215 AAAEVLKRE 223 AA L+ Sbjct: 74 AAEVALQEL 82 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 25/63 (39%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y+ P+FT VEI G+ +KR AE A Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKREAEISAGR 162 Query: 218 EVL 220 L Sbjct: 163 TAL 165 >gi|8346542|emb|CAB93934.1| BcpLH protein [Brassica rapa subsp. pekinensis] gi|50511731|gb|AAT77418.1| dsRNA-binding protein LH-c [Brassica napus] Length = 274 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TP Y+ GP H P F V ++ + G +++AAEQ Sbjct: 16 FKSRLQEYAQRYKLPTPLYETIKE-GPSHKPLFQSTVIVNDVRYDSLPGF-FNRKAAEQS 73 Query: 215 AAAEVLKRE 223 AA L+ Sbjct: 74 AAEVALQEL 82 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 25/63 (39%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y+ P+FT VEI G+ +K+ AE A Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGR 162 Query: 218 EVL 220 L Sbjct: 163 TAL 165 >gi|499371|gb|AAA21843.1| RNase III [Escherichia coli] Length = 45 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 3/48 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGD 48 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGD 45 >gi|50511729|gb|AAT77417.1| dsRNA-binding protein LH2 [Brassica oleracea var. capitata] Length = 278 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TP Y+ GP H F V + G+ G +++AAEQ Sbjct: 16 FKSRLQEYAQKYKLPTPIYETVKE-GPSHKSLFQSTVIVDGVRYDSLPGF-FNRKAAEQS 73 Query: 215 AAAEVLKRE 223 AA L+ Sbjct: 74 AAEVALQEL 82 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 25/63 (39%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y+ P+FT VEI G+ +KR AE A Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKREAEISAGR 162 Query: 218 EVL 220 L Sbjct: 163 TAL 165 >gi|115491843|ref|XP_001210549.1| hypothetical protein ATEG_00463 [Aspergillus terreus NIH2624] gi|114197409|gb|EAU39109.1| hypothetical protein ATEG_00463 [Aspergillus terreus NIH2624] Length = 396 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 51/284 (17%), Positives = 85/284 (29%), Gaps = 69/284 (24%) Query: 2 SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + + + L R+ Y + L L ++L +S + + E L LG +L S L Sbjct: 82 ESAKLAALHARL-YLPSRLPLETLARSLVDASADPNPNFNNESLATLGHDLLTYYTSEHL 140 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------------DLASFIRVSSD--- 102 + + + V +T + +ARE L F RV Sbjct: 141 LCTYPRLPLTVVFAAMYAYVGPKTLAAMAREWGVEMAAVPGGEVDPGLLQFQRVVPGTDI 200 Query: 103 ----------LRKDVCSFMTSI----------------------------QADVVESLIA 124 D S+ S+ A V +++ Sbjct: 201 NAEPASSPTRPNDDRKSWRVSMTSRVVYDNEFGEPPQSRAPSQGVTAEQASATFVRAVMG 260 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKFGVTPEYKVT 178 ++YL G A F ++++ R L + RD L + P K+ Sbjct: 261 SIYLHAGRPAAKRFFEQHFLSRHLNISELFNFSQPARD----LSRLCARENFEPPVAKII 316 Query: 179 FRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +G P F V + +G S A AA LK Sbjct: 317 SETGRKSRHPVFVVGIYSGQDKLGEGAGASLLEARSRAAVAALK 360 >gi|320581623|gb|EFW95843.1| Mitochondrial ribosomal protein of the large subunit [Pichia angusta DL-1] Length = 355 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 78/242 (32%), Gaps = 40/242 (16%) Query: 8 TLEKRIGYAFA-NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L R+ + +S L +ALT ++ Y ++++ + G +L + L + Sbjct: 76 ALHARLNLSPNFKKSTLVRALTSRMKNNDYVDNHQ-MALFGSSMLSYYTTEYLITTYPRL 134 Query: 67 KEGELSVRFNSLVSAETCSQVAREL---------DLASFI-------RVSS--------- 101 G L ++ V VA+ + +L ++ R Sbjct: 135 PIGILKAATDAFVGDYPLHDVAKNVWGIEEDLSTNLEKYLSKEPKLFRFGRLRYDRQAQE 194 Query: 102 ---DLRKDVCSFMTSI-----QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-- 151 + K + TS+ A+ V +++A ++ F+ ++ R + Sbjct: 195 VEAGITKYSITSETSLSTATAYANSVRAIVAGVFAADDERETKDFIYRHILSRNVDISSM 254 Query: 152 -KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKR 209 +F K L K P ++ +G P F V +G S + Sbjct: 255 FEFEEPGK-LLARLLKTKNMELPTIRLISETGRQSSSPTFIVGCFSGDNLLGEGQGTSLK 313 Query: 210 AA 211 A Sbjct: 314 EA 315 >gi|242821621|ref|XP_002487717.1| dsRNA-specific ribonuclease III, putative [Talaromyces stipitatus ATCC 10500] gi|218712638|gb|EED12063.1| dsRNA-specific ribonuclease III, putative [Talaromyces stipitatus ATCC 10500] Length = 129 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 65/144 (45%), Gaps = 17/144 (11%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+ I Y F +R+LL +AL +Q +RL LGD+++ L++ + Sbjct: 1 MDCDGLERIIDYTFKDRNLLNEAL--------HQTQNKRLALLGDKVVALMLIDSWYQTG 52 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S +G ++ + S E + A + L +R R+ S T A E+++ Sbjct: 53 GSCYDGNSLLQHAA--SNEAMANRAIQTHLKDMVR-----RQSHQSPSTHGLATDFEAVV 105 Query: 124 AALYLDGG--IEVAGTFVDKYWKQ 145 A+++D G ++ + + + + Sbjct: 106 GAVWIDCGKDLQTLEKVIRQLYVE 129 >gi|302142076|emb|CBI19279.3| unnamed protein product [Vitis vinifera] Length = 415 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TP Y GP H P F V ++ + G +++AAEQ Sbjct: 16 FKSRLQEYAQKVGLPTPLYDTIKE-GPPHVPSFKSTVIVNDVRYDSLPGF-SNRKAAEQS 73 Query: 215 AAAEVL 220 AA L Sbjct: 74 AAEVAL 79 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 24/63 (38%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y P F+ VEI G+ +K+ AE AA Sbjct: 103 KNLLQEYAQKMNYAIPMYVCQKDESPGRAASFSCTVEIGGIRYIGAAARTKKEAEIKAAR 162 Query: 218 EVL 220 L Sbjct: 163 TAL 165 >gi|225459069|ref|XP_002285663.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147781065|emb|CAN68128.1| hypothetical protein VITISV_043706 [Vitis vinifera] Length = 400 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TP Y GP H P F V ++ + G +++AAEQ Sbjct: 16 FKSRLQEYAQKVGLPTPLYDTIKE-GPPHVPSFKSTVIVNDVRYDSLPGF-SNRKAAEQS 73 Query: 215 AAAEVL 220 AA L Sbjct: 74 AAEVAL 79 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 24/63 (38%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y P F+ VEI G+ +K+ AE AA Sbjct: 103 KNLLQEYAQKMNYAIPMYVCQKDESPGRAASFSCTVEIGGIRYIGAAARTKKEAEIKAAR 162 Query: 218 EVL 220 L Sbjct: 163 TAL 165 >gi|290760516|gb|ADD59812.1| dsRNA-specific ribonuclease RNase III [Paulownia witches'-broom phytoplasma] Length = 112 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 2/81 (2%) Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 LD G A L + D KT+LQE ++ +YK+ GP H Sbjct: 1 LDLGYLTAKKVFHNIVLPH-LAKTIYIIDFKTQLQEIVQSEKKA-IQYKIVQEQGPAHSK 58 Query: 188 RFTVVVEISGLAPAQGMDCSK 208 +F V + G +K Sbjct: 59 KFVAEVYLEKNLLGTGEGSTK 79 >gi|308162643|gb|EFO65028.1| Dicer [Giardia lamblia P15] Length = 754 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 10/129 (7%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALT Y++LE LGD L ++ L + EG L+ S Sbjct: 633 IQLLQLALT--------PHVYQKLELLGDAFLKCNLAFHLHVLHPTLTEGTLTRMRQSAE 684 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 + ++ R S + + + D E+++AA+ L G E A +FV Sbjct: 685 TNCVLGKLIRR--FPSIVDKVITESHPKIQSDSKVYGDTFEAILAAVLLACGEEAASSFV 742 Query: 140 DKYWKQRAL 148 ++ + + Sbjct: 743 REFVLPQVV 751 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 6/111 (5%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 S+ ++RLE LGD +LG +++ L F +A G L LV ET + + + L Sbjct: 324 FGVSHTNVFQRLELLGDAVLGFVVTARLLCLFPNASVGTLVDLKMELVRNETLNYLVQML 383 Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVDK 141 L S L + AD+ E L+ +++ GI F+ K Sbjct: 384 RLPQLAEFSGTLMA-----KSKTWADMYEELVGSVFTGPNGIYGCEEFLAK 429 >gi|255946916|ref|XP_002564225.1| Pc22g01810 [Penicillium chrysogenum Wisconsin 54-1255] gi|211591242|emb|CAP97469.1| Pc22g01810 [Penicillium chrysogenum Wisconsin 54-1255] Length = 151 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 8/131 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LEK+I Y F +R LL +AL +S + Q+ + L GD +L L+++ + + Sbjct: 14 EIEVLEKKIQYRFVDRELLREAL-QAS-TDRNQDGNKTLALFGDLVLDLVLA--ISGRKE 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + G++ S+ +L + FI + ++ A +E+++ Sbjct: 70 NKPRGKIKEMSTQKAGNVHLSKQGFDLGIDKFIVKNPSQTVVGI----NVMATTMEAIVG 125 Query: 125 ALYLDGGIEVA 135 A+YLD ++A Sbjct: 126 AVYLDCNKQIA 136 >gi|158301486|ref|XP_321167.4| AGAP001898-PA [Anopheles gambiae str. PEST] gi|157012494|gb|EAA01591.4| AGAP001898-PA [Anopheles gambiae str. PEST] Length = 329 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 79/237 (33%), Gaps = 35/237 (14%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55 KR+ +F + ++L++A TH S L G++++ + Sbjct: 68 KRLQESF-DANVLQQAFTHQSFIEQETRKQAAVGIEQPVLGVHDNRELIAQGEQLVAEYV 126 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 L ++ +L S + V+ L I + D ++ Sbjct: 127 EAFLLTALPRLPRQFIASVREALTSEAQLAHVSSHLGTKDIIMAAEFPIDD------TLL 180 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGV 171 A +++++AAL G E FV + QR L D LQE+ + Sbjct: 181 ASTLKAIVAALQRSSGDERCFLFVRDFLCGQLNQRDLYEYLEIADPLRTLQEYCKERGLA 240 Query: 172 TPEYKVTFRSG-----PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++ G H V + G S+ A + AA + L++ Sbjct: 241 DPEPRLIGNVGRNTLLAAHQ----VGIYSDRKLLGTGYGESQTVAVEEAARDCLRQL 293 >gi|304307737|ref|NP_001182008.1| loquacious [Bombyx mori] gi|300669735|dbj|BAJ11656.1| loquacious [Bombyx mori] Length = 382 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE A+ P+Y++ G H+P F V ++ L A G SK+ A+ AA Sbjct: 74 PVSVLQELL-ARRETVPKYELLQIEGMIHEPTFRYRVTVADL-FAMGTGRSKKEAKHSAA 131 Query: 217 AEVLKRE 223 +L + Sbjct: 132 KALLDKL 138 Score = 40.1 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H+ +FT++ + G SK+ A++ AA ++ + Sbjct: 204 PHERQFTIICTLL-KRREVGTGKSKKLAKRQAAYKMWQAL 242 >gi|291238580|ref|XP_002739212.1| PREDICTED: Probable RISC-loading complex subunit BRAFLDRAFT_242885-like [Saccoglossus kowalevskii] Length = 315 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + +LQE A+ P+Y GP H F + + QG SK+ Sbjct: 104 DGIPGNPVGQLQELVVARHWRRPDYIQISECGPPHSREFIIACRVHSFQE-QGKGRSKKI 162 Query: 211 AEQVAAAEVLKR 222 A++ AA +L+R Sbjct: 163 AKRAAAWAMLQR 174 Score = 71.6 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE + TP Y + G H P+F V + G A G SK+ A+ AA Sbjct: 11 PISILQELCTKRSL-TPIYDLIACEGAAHQPKFVYRVTV-GEHTANGDGTSKKQAKHNAA 68 Query: 217 AEVLKREGI 225 VL++ + Sbjct: 69 ENVLEQFNV 77 >gi|148681491|gb|EDL13438.1| mCG2026 [Mus musculus] Length = 221 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 QE K PEY VT SGP H FT+ + G SK+ A++ AA ++L Sbjct: 20 QELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNAAVKMLL 78 Query: 222 R 222 R Sbjct: 79 R 79 >gi|149060895|gb|EDM11505.1| rCG30397, isoform CRA_a [Rattus norvegicus] Length = 408 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 5/96 (5%) Query: 132 IEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 IE F K + +K+G + + L + A+ P+Y + G Sbjct: 177 IEKPKLFFKKR-PKTIIKAGPEYGQGMNPISRLAQIQQARKEKEPDYVLLSERGMPRRRE 235 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + V++ G A G +K+ A++ AA +L + G Sbjct: 236 FVMQVKV-GNEVATGTGPNKKIAKKNAAEAMLLQLG 270 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 110 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 167 Query: 223 E 223 Sbjct: 168 L 168 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 40 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 75 >gi|55741784|ref|NP_001007151.1| double-stranded RNA-binding protein Staufen homolog 2 isoform SS [Rattus norvegicus] gi|47679379|gb|AAT36670.1| staufen2 spliceform SS [Rattus norvegicus] gi|52001197|gb|AAU21479.1| double-stranded RNA binding protein staufen 2 52 kDa isoform [Rattus norvegicus] Length = 480 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 5/96 (5%) Query: 132 IEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 IE F K + +K+G + + L + A+ P+Y + G Sbjct: 249 IEKPKLFFKKR-PKTIIKAGPEYGQGMNPISRLAQIQQARKEKEPDYVLLSERGMPRRRE 307 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + V++ G A G +K+ A++ AA +L + G Sbjct: 308 FVMQVKV-GNEVATGTGPNKKIAKKNAAEAMLLQLG 342 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|47679381|gb|AAT36671.1| staufen2 spliceform SL [Rattus norvegicus] gi|52001195|gb|AAU21478.1| double-stranded RNA binding protein staufen 2 59 kDa isoform [Rattus norvegicus] Length = 539 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 5/96 (5%) Query: 132 IEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 IE F K + +K+G + + L + A+ P+Y + G Sbjct: 249 IEKPKLFFKKR-PKTIIKAGPEYGQGMNPISRLAQIQQARKEKEPDYVLLSERGMPRRRE 307 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + V++ G A G +K+ A++ AA +L + G Sbjct: 308 FVMQVKV-GNEVATGTGPNKKIAKKNAAEAMLLQLG 342 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|51592098|ref|NP_604461.2| double-stranded RNA-binding protein Staufen homolog 2 isoform LS (B) [Rattus norvegicus] gi|47679383|gb|AAT36672.1| staufen2 spliceform LS [Rattus norvegicus] gi|55715910|gb|AAH85705.1| Stau2 protein [Rattus norvegicus] Length = 512 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 5/96 (5%) Query: 132 IEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 IE F K + +K+G + + L + A+ P+Y + G Sbjct: 281 IEKPKLFFKKR-PKTIIKAGPEYGQGMNPISRLAQIQQARKEKEPDYVLLSERGMPRRRE 339 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + V++ G A G +K+ A++ AA +L + G Sbjct: 340 FVMQVKV-GNEVATGTGPNKKIAKKNAAEAMLLQLG 374 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P+YK+ SGP H F+V + + S + A+Q A + L Sbjct: 20 HSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271 Query: 223 E 223 Sbjct: 272 L 272 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179 >gi|255944467|ref|XP_002563001.1| Pc20g04580 [Penicillium chrysogenum Wisconsin 54-1255] gi|211587736|emb|CAP85787.1| Pc20g04580 [Penicillium chrysogenum Wisconsin 54-1255] Length = 151 Score = 71.6 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 10/125 (8%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LE IGY F +RSLLE+AL + E ERL LGD++L L++ + ++ Sbjct: 3 AELESLIGYQFHDRSLLEEALE---EAGPQTEGNERLALLGDKVLSLMLLHRWYMEGNTT 59 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT-SIQADVVESLIAA 125 ++G + + AR LD F+ R D+ + A V++++ A Sbjct: 60 EQG--TNLLQIYAGNKHLISRARALDFPKFVI----QRLDIKRSVPDHTLATTVKAILGA 113 Query: 126 LYLDG 130 ++LD Sbjct: 114 VWLDS 118 >gi|326507276|dbj|BAJ95715.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 580 Score = 71.6 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 6/73 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE AH P Y RSGP H P FT VE++G G +K+ A++ A Sbjct: 88 YKNLLQETAHRAGLKLPMYTTI-RSGPGHTPTFTCTVELAGR-IFTGSPGKTKKQAQKNA 145 Query: 216 AAEV---LKREGI 225 A LK+ + Sbjct: 146 AMAAWSELKQLPL 158 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVA 215 K +LQE A P Y R GPDH PRF V +G + G + R AE A Sbjct: 2 FKNQLQELAQRSCFNLPSYACI-REGPDHAPRFKATVTFNGESFESPGFYSTLRQAEHAA 60 Query: 216 AAEVLKRE 223 A L Sbjct: 61 AEVALNEL 68 >gi|73919460|sp|Q68SB1|STAU2_RAT RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2; Short=r-staufen protein gi|47679385|gb|AAT36673.1| staufen2 spliceform LL [Rattus norvegicus] Length = 571 Score = 71.6 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 5/96 (5%) Query: 132 IEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 IE F K + +K+G + + L + A+ P+Y + G Sbjct: 281 IEKPKLFFKKR-PKTIIKAGPEYGQGMNPISRLAQIQQARKEKEPDYVLLSERGMPRRRE 339 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + V++ G A G +K+ A++ AA +L + G Sbjct: 340 FVMQVKV-GNEVATGTGPNKKIAKKNAAEAMLLQLG 374 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P+YK+ SGP H F+V + + S + A+Q A + L Sbjct: 20 HSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271 Query: 223 E 223 Sbjct: 272 L 272 Score = 37.4 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179 >gi|6730350|pdb|1DI2|A Chain A, Crystal Structure Of A Dsrna-Binding Domain Complexed With Dsrna: Molecular Basis Of Double-Stranded Rna-Protein Interactions gi|6730351|pdb|1DI2|B Chain B, Crystal Structure Of A Dsrna-Binding Domain Complexed With Dsrna: Molecular Basis Of Double-Stranded Rna-Protein Interactions Length = 69 Score = 71.6 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 LQE A K PEY V SGP H FT+ + G SK+ A++VAA ++ Sbjct: 5 SLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVE-TGSGTSKQVAKRVAAEKL 63 Query: 220 LKR 222 L + Sbjct: 64 LTK 66 >gi|27262829|emb|CAD59423.1| dsRNA-binding protein [Brassica rapa subsp. rapa] Length = 275 Score = 71.6 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TP Y+ GP H P F V ++ + G +++AAEQ Sbjct: 16 FKSRLQEYAQRYKLPTPLYETIKE-GPSHKPLFQSTVIVNDVRYDSLPGF-FNRKAAEQS 73 Query: 215 AAAEVLKRE 223 AA L+ Sbjct: 74 AAEVALQEL 82 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 25/63 (39%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y+ P+FT VEI G+ +K+ AE A Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGR 162 Query: 218 EVL 220 L Sbjct: 163 TAL 165 >gi|148228849|ref|NP_001080784.1| staufen, RNA binding protein, homolog 2 [Xenopus laevis] gi|28302215|gb|AAH46732.1| Stau2-a protein [Xenopus laevis] Length = 685 Score = 71.6 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Query: 132 IEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 IE ++ + K S ++ + + + L + AK PEY + G F Sbjct: 363 IEKPRIYIKRRPKNIIKASPEYGQGMNPISRLAQIQQAKKEKEPEYVLLSERGIQRRREF 422 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + V++ G A G +K+ A++ AA +L + G Sbjct: 423 IMQVKV-GEETATGTGPNKKIAKRNAAEAMLLQLG 456 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P+YK+ GP H FTV + + Q S + ++ AA+ L Sbjct: 102 NRIQPQYKLLDERGPAHSKLFTVQLTLGEQTW-QAESTSIKKSQHAAASLAL 152 Score = 42.0 bits (98), Expect = 0.065, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 E + + ++V SGP H F V + G A+G S Sbjct: 296 EISLKRNLPL-SFEVIKESGPPHMKSFVTKVTV-GEFTAEGEGNS 338 >gi|27262835|emb|CAD59426.1| dsRNA-binding protein [Brassica oleracea var. gongylodes] gi|27262839|emb|CAD59428.1| dsRNA-binding protein [Brassica oleracea var. gemmifera] Length = 283 Score = 71.3 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TP Y+ GP H P F V ++ + G +++AAEQ Sbjct: 16 FKSRLQEYAQRYKLPTPLYEAIKE-GPSHKPLFQSTVIVNDVRYDSLPGF-FNRKAAEQS 73 Query: 215 AAAEVLKRE 223 AA L+ Sbjct: 74 AAEVALQEL 82 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 25/63 (39%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y+ P+FT VEI G+ +K+ AE A Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGR 162 Query: 218 EVL 220 L Sbjct: 163 TAL 165 >gi|27262837|emb|CAD59427.1| dsRNA-binding protein [Brassica oleracea var. italica] Length = 283 Score = 71.3 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TP Y+ GP H P F V ++ + G +++AAEQ Sbjct: 16 FKSRLQEYAQRYKLPTPLYEAIKE-GPSHKPLFQSTVIVNDVRYDSLPGF-FNRKAAEQS 73 Query: 215 AAAEVLKRE 223 AA L+ Sbjct: 74 AAEVALQEL 82 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 25/63 (39%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y+ P+FT VEI G+ +K+ AE A Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGR 162 Query: 218 EVL 220 L Sbjct: 163 TAL 165 >gi|27262831|emb|CAD59424.1| dsRNA-binding protein [Brassica oleracea var. acephala] Length = 283 Score = 71.3 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TP Y+ GP H P F V ++ + G +++AAEQ Sbjct: 16 FKSRLQEYAQRYKLPTPLYEAIKE-GPSHKPLFQSTVIVNDVRYDSLPGF-FNRKAAEQS 73 Query: 215 AAAEVLKRE 223 AA L+ Sbjct: 74 AAEVALQEL 82 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 25/63 (39%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y+ P+FT VEI G+ +K+ AE A Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGR 162 Query: 218 EVL 220 L Sbjct: 163 TAL 165 >gi|149060896|gb|EDM11506.1| rCG30397, isoform CRA_b [Rattus norvegicus] gi|149060897|gb|EDM11507.1| rCG30397, isoform CRA_b [Rattus norvegicus] gi|149060898|gb|EDM11508.1| rCG30397, isoform CRA_b [Rattus norvegicus] gi|149060899|gb|EDM11509.1| rCG30397, isoform CRA_b [Rattus norvegicus] Length = 467 Score = 71.3 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 5/96 (5%) Query: 132 IEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 IE F K + +K+G + + L + A+ P+Y + G Sbjct: 177 IEKPKLFFKKR-PKTIIKAGPEYGQGMNPISRLAQIQQARKEKEPDYVLLSERGMPRRRE 235 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + V++ G A G +K+ A++ AA +L + G Sbjct: 236 FVMQVKV-GNEVATGTGPNKKIAKKNAAEAMLLQLG 270 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 110 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 167 Query: 223 E 223 Sbjct: 168 L 168 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 40 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 75 >gi|149060900|gb|EDM11510.1| rCG30397, isoform CRA_c [Rattus norvegicus] Length = 224 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 18 MNPISRLAQIQQARKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 76 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 77 AAEAMLLQLG 86 >gi|242054547|ref|XP_002456419.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor] gi|241928394|gb|EES01539.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor] Length = 448 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMDCSKRAAEQ 213 K+ LQE + P Y+ T R GP H P F V ++G + + +G S + A Sbjct: 2 YKSRLQELCQKRRWAPPVYEPT-REGPAHTPLFRATVVVNGESFSSPDEGE-RSVKEACN 59 Query: 214 VAAAEVLKRE 223 +AA + Sbjct: 60 LAAMAAFENL 69 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 157 AKTELQEWAHAKFGVTPEYKVT-FRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQV 214 K LQE+ + P Y T S ++ F VEI G A +G +K+ AE Sbjct: 177 YKNLLQEFVQKEGFPLPTYDTTLDVS--NYSAAFISTVEIQG-ATFRGEPGNTKKQAEMN 233 Query: 215 AAAEVLK 221 AA + Sbjct: 234 AAKIAFQ 240 Score = 58.2 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 10/69 (14%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-----APAQGMDCSKRAA 211 K +LQE+A + + P Y+ G P F V I G + + A Sbjct: 94 YKNQLQEYAQKRGKLLPSYRPIH-GGSLRAPLFKSEVTIDGQTFESPEYC----RTMKEA 148 Query: 212 EQVAAAEVL 220 E AA L Sbjct: 149 ETAAAKVAL 157 >gi|269115408|gb|ACZ26274.1| dicer-1-like protein [Mayetiola destructor] Length = 227 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH-F 63 Y +EK++ Y F ++S + +A +H S ++ +Y+ L+F+GD I+ L+ LF Sbjct: 8 YEQIEKKLNYTFRDKSFMLQAFSHESFTANDICPNYDSLDFVGDGIINYLLCRHLFREAG 67 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 E+ N+L S + V+ + +F R+ Sbjct: 68 GQFSANEIEFFTNTLKSNCCFATVSIRHGIHNFFRL 103 >gi|328766294|gb|EGF76349.1| hypothetical protein BATDEDRAFT_92769 [Batrachochytrium dendrobatidis JAM81] Length = 334 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 87/240 (36%), Gaps = 53/240 (22%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S + ++RLEFLGD +L L L+ G LS LV + + V+ + Sbjct: 6 SGTGKLGSMFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQ 65 Query: 91 LDLASFIRVSSD-LRKDVCSFMTSIQ---------------------------------- 115 + L +IR + + + F T +Q Sbjct: 66 IGLVKYIRHTDMTMEAAIGRFATWVQGYLASESSTSLPISTSATQIASARMFWNKGNTAP 125 Query: 116 ---ADVVESLIAALYLDGGIEVAG-------TFVDKYWKQRALKSGKFRR---DAKTELQ 162 DV ES++ A+++D ++ T + +W + G + EL+ Sbjct: 126 KTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELR 185 Query: 163 EWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +++ F V +Y T+ G H T + + AQ + +R A++ AA ++ Sbjct: 186 TLSYSLFKCVKIDY--TYEYGL-HGGT-TATITYHNMVLAQCLGTGQRDAKKAAACTAVE 241 >gi|155573864|gb|ABU24344.1| dsRNA-activated protein kinase R [Salmo salar] Length = 713 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 156 DAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + ++L E+A + + +++ GPDH FT+ V I G A G+ +K+ A++ Sbjct: 5 NYISKLFEYAQRQGQISDIKFEEVGTDGPDHLKTFTLRVVIKGHAYPNGVGKTKKEAKRN 64 Query: 215 AAAEVL 220 AA L Sbjct: 65 AAKHAL 70 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + ++K+ +SGP H+P+F V I G+ + + A+Q AA Sbjct: 239 YCQKTKRFL-DFKLVEKSGPSHNPQFVYKVLIDKREYPDGLGKTAKEAKQQAAQLA 293 Score = 35.8 bits (82), Expect = 4.8, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 12/68 (17%) Query: 157 AKTELQEWAHAKFGVTPEYKVTF--RSGPDHDPRFTVVV---EISGLAPAQGMDCSKRAA 211 + L E + K R GP++ T + +G +K+ A Sbjct: 107 YVSWLNEHSQKNKLSL---KALEGARVGPNN----TSQCCRYVVGEKEYPEGFGNTKKEA 159 Query: 212 EQVAAAEV 219 ++ AA +V Sbjct: 160 KEEAAMQV 167 >gi|328769566|gb|EGF79610.1| hypothetical protein BATDEDRAFT_26082 [Batrachochytrium dendrobatidis JAM81] Length = 334 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 85/240 (35%), Gaps = 53/240 (22%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S + ++RLEFLGD +L L L+ G LS LV + + V+ + Sbjct: 6 SGTGKLGSIFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQ 65 Query: 91 LDLASFIRV--------------------------------------SSDLRKDVCSFMT 112 + L +IR S+ L + + Sbjct: 66 IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTSLPISTSATQIASARLFWNKGNTAP 125 Query: 113 SIQADVVESLIAALYLDGGIEVAG-------TFVDKYWKQRALKSGKFRR---DAKTELQ 162 DV ES++ A+++D ++ T + +W + G + EL+ Sbjct: 126 KTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELR 185 Query: 163 EWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +++ F V +Y T+ G H T + + AQ + +R A++ AA +K Sbjct: 186 TLSYSLFKCVKIDY--TYEYGL-HGGT-TATITYHNMVLAQCLGTGQRDAKKAAACTAVK 241 >gi|19526446|gb|AAL89719.1|AF483621_1 RNA-binding protein staufen splice form B [Rattus norvegicus] Length = 512 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 5/96 (5%) Query: 132 IEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 IE F K + +K+G + + L + A+ P+Y + G + Sbjct: 281 IEKPKLFFKKR-PKTIIKAGPEYGQGMNPISRLAQIQQARKEKEPDYVLLSERGMPRRRK 339 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + V++ G A G +K+ A++ AA +L + G Sbjct: 340 FVMQVKV-GNEVATGTGPNKKIAKKNAAEAMLLQLG 374 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P+YK+ SGP H F+V + + S + A+Q A + L Sbjct: 20 HSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271 Query: 223 E 223 Sbjct: 272 L 272 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179 >gi|296089027|emb|CBI38730.3| unnamed protein product [Vitis vinifera] Length = 1474 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 1357 QLKDVINYPVPAAKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1413 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 1414 EGQLTRMRQQMVSNMVLYQSALCKGLQSYIQ 1444 >gi|322511163|gb|ADX06476.1| hypothetical protein 162276054 [Organic Lake phycodnavirus 2] Length = 165 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 52/155 (33%), Gaps = 39/155 (25%) Query: 104 RKDVCSFMTSIQADVVESLIAALYLD------------GGIEVAGTFVDKYWKQRALKSG 151 R+ + ES + AL+LD G F++ + + Sbjct: 9 RRKKNRCNYKKLGCLFESFLGALFLDTNETKDETFLMGNGTHYCQLFIENVYNALVDWNE 68 Query: 152 KFRRD--AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-------------- 195 D K Q +F TPEYK+ + D + R+T+ V + Sbjct: 69 ILENDDNYKNIFQVKIQKEFKCTPEYKIIHQ---DEELRYTMGVYLCLGNDNCVSFDLLK 125 Query: 196 --------SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + G+ K+ AEQ+A + LK+ Sbjct: 126 SLDNIKSSNNIHFGTGVHKIKKKAEQLACLDALKK 160 >gi|242760076|ref|XP_002339915.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500] gi|218723111|gb|EED22528.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500] Length = 129 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 64/142 (45%), Gaps = 17/142 (11%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +++E IGY F +R LL KAL +Q +RL LGD+++ L++ + Sbjct: 1 MDCNSVEGIIGYTFNDRELLAKAL--------HQTQNKRLALLGDKVVALVLIDSWYQTG 52 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S G ++ ++ S E + + L + ++S + + A E+++ Sbjct: 53 TSCSAGSSLLQHSA--SNEAMAHQEDKTHLKDTVCLNSHQAQSIHG-----LATNFEAVV 105 Query: 124 AALYLDGG--IEVAGTFVDKYW 143 A+++D G ++ + + + Sbjct: 106 GAVWIDCGKDLQTLEKVIRQLY 127 >gi|321253833|ref|XP_003192867.1| hypothetical protein CGB_C5530W [Cryptococcus gattii WM276] gi|317459336|gb|ADV21080.1| hypothetical protein CNC03670 [Cryptococcus gattii WM276] Length = 916 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 34/158 (21%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR---- 74 + L +ALT S + +YERLE LGD +L I+ ++ H A E S++ Sbjct: 444 HPELALQALTAPSSVNVTPWTYERLEILGDTLLKFFITIHVYLHGGGANSREDSLKVWQD 503 Query: 75 FNSLVSAETCSQVARELDLASFIRVSS-----------DLRKDVC--------------- 108 + LVS T + A +L L ++R +L Sbjct: 504 RHKLVSNRTLTANAIKLGLVDYVRDKRLKVKDWIPRDWELEVSTGQTVPKKAVQTSHDGP 563 Query: 109 ---SFMTSIQADVVESLIAALY-LDGGIEVAGTFVDKY 142 + AD+VE++I A Y +D + + + + Sbjct: 564 EIRRLGDKLLADIVEAIIGASYGMDKDFDNVISTLIRL 601 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 76/262 (29%), Gaps = 56/262 (21%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTLL 59 ST E +GY F ++ + S+S+ +E+Y+ L G+ +L L + LL Sbjct: 639 SLSTFE-VLGYKFKSKKRYNDVI---SMSNQPDAKRIRENYKML---GNAVLDLHVIELL 691 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS------------------- 100 + G LS + +A EL L ++ Sbjct: 692 LAKYPEEGPGSLSNMKTFRTTEGLRCALATELGLQDLLKDGDERAERELGRATYFMRDAK 751 Query: 101 --------SDLRKDVCSFMTSIQADVV-----ESLIAALYLDGGI--EVAGTFVDKYWKQ 145 S + + ++ + E + A++ D G E D + Sbjct: 752 AQADAAGLSGDEQGGIHYWDNVAVNHFTGSVIEVIYGAIFQDSGFSLEHTQRIFDDHIVP 811 Query: 146 RALK----SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 K K L W AK Y GP VV A Sbjct: 812 FTEKYCKGPSATDLHPKGLLTRWMQAKGCA---YWKLDAVGP---KLCEGVVTCHDQDVA 865 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + + A + E +KR Sbjct: 866 RCKAFTTHMAVRNVCEEAIKRL 887 >gi|321448873|gb|EFX61617.1| hypothetical protein DAPPUDRAFT_272455 [Daphnia pulex] Length = 177 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 E+ GY F + +L +AL + S S + +RLE +GD +L L++ F + + Sbjct: 26 FEEIFGYKFKDEEMLHQALKRPTASLKSSVKKGDRLELVGDAVLDLIMIEECFERHVNYE 85 Query: 68 EGELSVRFNSLVSAETCSQVARELD 92 G+LS L +T ++ A E+ Sbjct: 86 AGQLSGVKCELTCNDTLARKAEEIQ 110 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 3/46 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRIL 51 LE + Y+F NR LL+ ALTH S +YERLEFLGD +L Sbjct: 135 IDKLESILNYSFKNRGLLKGALTHRYFS---ALNYERLEFLGDIVL 177 >gi|256419005|ref|NP_001157857.1| double-stranded RNA-binding protein Staufen homolog 2 isoform f [Homo sapiens] Length = 473 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 268 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 326 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 327 AAEAMLLQLG 336 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 176 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 233 Query: 223 E 223 Sbjct: 234 L 234 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 106 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 141 >gi|256418993|ref|NP_055208.2| double-stranded RNA-binding protein Staufen homolog 2 isoform e [Homo sapiens] gi|256419003|ref|NP_001157856.1| double-stranded RNA-binding protein Staufen homolog 2 isoform e [Homo sapiens] gi|168270864|dbj|BAG10225.1| double-stranded RNA-binding protein Staufen homolog 2 [synthetic construct] Length = 479 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|119607409|gb|EAW87003.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_a [Homo sapiens] Length = 549 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V P+YK+ GP H F+V + + S + A+Q A + L Sbjct: 20 NRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271 Query: 223 E 223 Sbjct: 272 L 272 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179 >gi|114620492|ref|XP_001165189.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] Length = 517 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|114620500|ref|XP_001165533.1| PREDICTED: hypothetical protein isoform 5 [Pan troglodytes] gi|114620502|ref|XP_001165569.1| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes] gi|114620504|ref|XP_001165598.1| PREDICTED: hypothetical protein isoform 7 [Pan troglodytes] gi|114620506|ref|XP_001165637.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform 8 [Pan troglodytes] gi|114620508|ref|XP_001165719.1| PREDICTED: hypothetical protein isoform 11 [Pan troglodytes] Length = 479 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|114620510|ref|XP_001165689.1| PREDICTED: staufen homolog 2 isoform 10 [Pan troglodytes] Length = 485 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 280 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 338 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 339 AAEAMLLQLG 348 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 201 VIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQEL 246 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|114620494|ref|XP_001165466.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes] gi|114620496|ref|XP_001165497.1| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes] gi|114620498|ref|XP_001165668.1| PREDICTED: hypothetical protein isoform 9 [Pan troglodytes] Length = 511 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V P+YK+ GP H F+V + + S + A+Q A++ L Sbjct: 20 NRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVASKAL 70 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271 Query: 223 E 223 Sbjct: 272 L 272 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179 >gi|73999252|ref|XP_535103.2| PREDICTED: similar to staufen homolog 2 isoform 1 [Canis familiaris] Length = 479 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|68533083|dbj|BAE06096.1| STAU2 variant protein [Homo sapiens] Length = 490 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 285 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 343 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 344 AAEAMLLQLG 353 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 193 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 250 Query: 223 E 223 Sbjct: 251 L 251 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 123 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 158 >gi|207080126|ref|NP_001128815.1| DKFZP469K0112 protein [Pongo abelii] gi|55729500|emb|CAH91481.1| hypothetical protein [Pongo abelii] Length = 479 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|197101215|ref|NP_001124896.1| double-stranded RNA-binding protein Staufen homolog 2 [Pongo abelii] gi|55726277|emb|CAH89910.1| hypothetical protein [Pongo abelii] Length = 491 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 286 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 344 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 345 AAEAMLLQLG 354 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 194 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 251 Query: 223 E 223 Sbjct: 252 L 252 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 124 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 159 >gi|6634457|emb|CAB64341.1| 39k3 protein [Homo sapiens] gi|83404956|gb|AAI10448.1| Staufen, RNA binding protein, homolog 2 (Drosophila) [Homo sapiens] gi|119607412|gb|EAW87006.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_d [Homo sapiens] gi|189054410|dbj|BAG37183.1| unnamed protein product [Homo sapiens] Length = 479 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|7022914|dbj|BAA91766.1| unnamed protein product [Homo sapiens] gi|10435197|dbj|BAB14522.1| unnamed protein product [Homo sapiens] Length = 206 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 1 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 59 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 60 AAEAMLLQLG 69 >gi|332240606|ref|XP_003269478.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 [Nomascus leucogenys] Length = 570 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 5/97 (5%) Query: 131 GIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G+E F K + +K+G + + L + AK P+Y + G Sbjct: 280 GVEKPKLFFKKR-PKTIVKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSERGMPRRR 338 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + V++ G A G +K+ A++ AA +L + G Sbjct: 339 EFVMQVKV-GNEVATGTGPNKKIAKKNAAEAMLLQLG 374 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V P+YK+ GP H F+V + + S + A+Q A + L Sbjct: 20 NRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271 Query: 223 E 223 Sbjct: 272 L 272 Score = 37.0 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179 >gi|55741782|ref|NP_001007150.1| double-stranded RNA-binding protein Staufen homolog 2 isoform LL (A) [Rattus norvegicus] gi|19526444|gb|AAL89718.1|AF483620_1 RNA-binding protein staufen splice form A [Rattus norvegicus] Length = 571 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 5/96 (5%) Query: 132 IEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 IE F K + +K+G + + L + A+ P+Y + G + Sbjct: 281 IEKPKLFFKKR-PKTIIKAGPEYGQGMNPISRLAQIQQARKEKEPDYVLLSERGMPRRRK 339 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + V++ G A G +K+ A++ AA +L + G Sbjct: 340 FVMQVKV-GNEVATGTGPNKKIAKKNAAEAMLLQLG 374 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P+YK+ SGP H F+V + + S + A+Q A + L Sbjct: 20 HSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271 Query: 223 E 223 Sbjct: 272 L 272 Score = 37.4 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179 >gi|281337840|gb|EFB13424.1| hypothetical protein PANDA_016331 [Ailuropoda melanoleuca] Length = 510 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V P+YK+ GP H F+V + + S + A+Q A + L Sbjct: 20 NRVQPQYKLLKERGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271 Query: 223 E 223 Sbjct: 272 L 272 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179 >gi|328774462|gb|EGF84499.1| hypothetical protein BATDEDRAFT_22607 [Batrachochytrium dendrobatidis JAM81] Length = 334 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 84/240 (35%), Gaps = 53/240 (22%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S + ++RLEFLGD +L L L+ G LS LV + + V+ + Sbjct: 6 SGTGKLGSMFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQ 65 Query: 91 LDLASFIRVSSDLRK--------------------------------------DVCSFMT 112 + L +IR + + + + Sbjct: 66 IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARMFWNKGNTAP 125 Query: 113 SIQADVVESLIAALYLDGGIEVAG-------TFVDKYWKQRALKSGKFRR---DAKTELQ 162 DV ES++ A+++D ++ T + +W + G + EL+ Sbjct: 126 KTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELR 185 Query: 163 EWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +++ F V +Y T+ G H T + + AQ + +R A++ AA ++ Sbjct: 186 TLSYSLFKCVKIDY--TYEYGL-HGGT-TATITYHNMVLAQCLGTGQRDAKKAAACTAVE 241 >gi|328766772|gb|EGF76825.1| hypothetical protein BATDEDRAFT_28342 [Batrachochytrium dendrobatidis JAM81] Length = 460 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 85/240 (35%), Gaps = 53/240 (22%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S + ++RLEFLGD +L L L+ G LS LV + + V+ + Sbjct: 132 SGTGKLGSIFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQ 191 Query: 91 LDLASFIRV--------------------------------------SSDLRKDVCSFMT 112 + L +IR S+ L + + Sbjct: 192 IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTSLPISTSATQIASARLFWNKGNTAP 251 Query: 113 SIQADVVESLIAALYLDGGIEVAG-------TFVDKYWKQRALKSGKFRR---DAKTELQ 162 DV ES++ A+++D ++ T + +W + G + EL+ Sbjct: 252 KTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELR 311 Query: 163 EWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +++ F V +Y T+ G H T + + AQ + +R A++ AA ++ Sbjct: 312 TLSYSLFKCVKIDY--TYEYGL-HGGT-TATITYHNMVLAQCLGTGQRDAKKAAACTAVE 367 >gi|256418997|ref|NP_001157853.1| double-stranded RNA-binding protein Staufen homolog 2 isoform b [Homo sapiens] Length = 538 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 37.4 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|311253723|ref|XP_003125644.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2-like [Sus scrofa] Length = 477 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 327 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 385 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 386 AAEAMLLQLG 395 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 235 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 292 Query: 223 E 223 Sbjct: 293 L 293 Score = 37.4 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 165 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 200 >gi|114620490|ref|XP_519808.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform 12 [Pan troglodytes] Length = 538 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 37.4 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|23507041|gb|AAN37927.1|AF459098_1 double-stranded RNA-binding protein Staufen2 short isoform [Homo sapiens] gi|14249967|gb|AAH08369.1| STAU2 protein [Homo sapiens] gi|119607411|gb|EAW87005.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_c [Homo sapiens] gi|123999574|gb|ABM87331.1| staufen, RNA binding protein, homolog 2 (Drosophila) [synthetic construct] gi|157929178|gb|ABW03874.1| staufen, RNA binding protein, homolog 2 (Drosophila) [synthetic construct] Length = 538 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 37.4 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|321457596|gb|EFX68679.1| hypothetical protein DAPPUDRAFT_259733 [Daphnia pulex] Length = 402 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 58/183 (31%), Gaps = 56/183 (30%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E + Y ++ +L +A TH + ++Y+RLE +GD L Sbjct: 83 SLAKFENILHYTSNDKEVLLEAFTHG--NSMKSQNYQRLELIGDAAL------------- 127 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110 G+++ ++ V + A + ++ + L K F Sbjct: 128 ----GDITKLRSACVCNDIFGVWAAKYGFHEHVQNLPPILLKQFNDFLEVVERENITFAP 183 Query: 111 -----------------MTSIQADVVESLIAALYLDGGIE------VAGTFVDKYWKQRA 147 + S ADV E++ A+ +D + V F+ + Sbjct: 184 FERELAANGQIMATQVAIPSFLADVFEAVEGAIIIDANLSFETLERVYARFMTPVYDSPP 243 Query: 148 LKS 150 L Sbjct: 244 LSP 246 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGL 53 E+ + Y+F + +L +ALT +S + +Y+RLE +GD L Sbjct: 315 VKAFEEILNYSFNYKEVLLEALT---YGNSIRSLNYQRLEVIGDAALDY 360 >gi|50949968|emb|CAH10527.1| hypothetical protein [Homo sapiens] Length = 314 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 109 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 167 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 168 AAEAMLLQLG 177 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 17 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 74 Query: 223 E 223 Sbjct: 75 L 75 >gi|242089535|ref|XP_002440600.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor] gi|241945885|gb|EES19030.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor] Length = 573 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y RSGP H P FT VE++G +K+ A++ AA Sbjct: 88 YKNLLQETAHRAGLKLPIYTTI-RSGPGHTPVFTCTVELAGKTFTGNPGKTKKQAQKNAA 146 Query: 217 AEV---LKRE 223 LK+ Sbjct: 147 MAAWSDLKQL 156 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVA 215 K +LQE A P Y R GPDH PRF V +G + R AE A Sbjct: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKATVNFNGEMFESPAFCSTLRQAEHAA 60 Query: 216 AAEVLKRE 223 A L Sbjct: 61 AEVALNEL 68 >gi|189233967|ref|XP_001810552.1| PREDICTED: similar to staufen [Tribolium castaneum] gi|270015116|gb|EFA11564.1| staufen [Tribolium castaneum] Length = 724 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + A P Y V G F + ++G + G+ +K+ A++ A Sbjct: 456 NPISRLIQIQQANKEREPVYTVLEERGAPRRREFVIEASVNGHS-CTGVGPNKKIAKRNA 514 Query: 216 AAEVLKREG 224 A +L + G Sbjct: 515 AEALLNQLG 523 Score = 58.2 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +Y++T SGP H FTV +++ + S + A+ AAA+ L + Sbjct: 124 QYQLTEESGPAHKKVFTVTLKLGNEEY-KSEGPSIKKAQHSAAAQSLAK 171 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + + E A + + ++V GP H F + A+G K+ +++ Sbjct: 345 KSPISLVHEIALKRNL-SVTFEVLSEKGPPHMKVFVTQCRVGNFV-AEGEGNGKKISKKR 402 Query: 215 AAAEVLKRE 223 AA ++L+ Sbjct: 403 AAEKMLEEL 411 >gi|301782463|ref|XP_002926647.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2-like [Ailuropoda melanoleuca] Length = 576 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|256418999|ref|NP_001157854.1| double-stranded RNA-binding protein Staufen homolog 2 isoform c [Homo sapiens] Length = 504 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 202 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 260 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 261 AAEAMLLQLG 270 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 110 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 167 Query: 223 E 223 Sbjct: 168 L 168 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 40 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 75 >gi|332826413|ref|XP_003311807.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 [Pan troglodytes] gi|221044446|dbj|BAH13900.1| unnamed protein product [Homo sapiens] Length = 504 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 202 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 260 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 261 AAEAMLLQLG 270 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 110 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 167 Query: 223 E 223 Sbjct: 168 L 168 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 40 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 75 >gi|221039638|dbj|BAH11582.1| unnamed protein product [Homo sapiens] Length = 390 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 286 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 344 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 345 AAEAMLLQLG 354 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 194 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 251 Query: 223 E 223 Sbjct: 252 L 252 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 124 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 159 >gi|256418995|ref|NP_001157852.1| double-stranded RNA-binding protein Staufen homolog 2 isoform a [Homo sapiens] Length = 570 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V P+YK+ GP H F+V + + S + A+Q A + L Sbjct: 20 NRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271 Query: 223 E 223 Sbjct: 272 L 272 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179 >gi|73919458|sp|Q9NUL3|STAU2_HUMAN RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2 gi|23507039|gb|AAN37926.1|AF459097_1 double-stranded RNA-binding protein Staufen2 long isoform [Homo sapiens] gi|7023858|dbj|BAA92111.1| unnamed protein product [Homo sapiens] gi|119607410|gb|EAW87004.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_b [Homo sapiens] gi|119607413|gb|EAW87007.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_b [Homo sapiens] Length = 570 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V P+YK+ GP H F+V + + S + A+Q A + L Sbjct: 20 NRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271 Query: 223 E 223 Sbjct: 272 L 272 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179 >gi|114620488|ref|XP_001165116.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform 1 [Pan troglodytes] Length = 570 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V P+YK+ GP H F+V + + S + A+Q A++ L Sbjct: 20 NRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVASKAL 70 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271 Query: 223 E 223 Sbjct: 272 L 272 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179 >gi|297299584|ref|XP_001084686.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform 4 [Macaca mulatta] Length = 570 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V P+YK+ GP H F+V + + S + A+Q A + L Sbjct: 20 NRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271 Query: 223 E 223 Sbjct: 272 L 272 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179 >gi|73999250|ref|XP_849924.1| PREDICTED: similar to staufen, RNA binding protein, homolog 2 isoform LL (A) isoform 2 [Canis familiaris] Length = 540 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 276 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 334 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 335 AAEAMLLQLG 344 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|195444872|ref|XP_002070068.1| GK11851 [Drosophila willistoni] gi|194166153|gb|EDW81054.1| GK11851 [Drosophila willistoni] Length = 321 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 82/224 (36%), Gaps = 32/224 (14%) Query: 23 LEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLISTLLFNHFDSAK 67 L++A T S +H +E L G + + L Sbjct: 83 LQQAFTDPSYAHKEEERQRKFGIEEEDLKIAHNAHLAEKGGHLATAYVEAYLKQSLPKVP 142 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 + L N L+S ET + V+R L S + S I A+ ++++I AL Sbjct: 143 KEGLEALANYLLSTETLANVSR--HLGSIELIYSSEYPP----SDKILANSLKAVIGALS 196 Query: 128 LDGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 G+E A TFV + ++ L+ K L+E + PE ++ G Sbjct: 197 DSSGVERAFTFVRDFICTQLNQKDLLEIWTPVEPFK-LLKEACQQRQWSEPEPRLQGDCG 255 Query: 183 PDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + + +G + + A+++AA + L++ Sbjct: 256 K--NTVLAAYQVGIYSNRQMLGKGFGETVQTAKEMAAIDALQKL 297 >gi|195395490|ref|XP_002056369.1| GJ10909 [Drosophila virilis] gi|194143078|gb|EDW59481.1| GJ10909 [Drosophila virilis] Length = 851 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEV 219 L E P+Y + SGP H F VEI+G SK+ A+ AA Sbjct: 782 LNELTSKNKWTPPQYTLRDDSGPSHSRMFRFSVEINGQTYTPAQGCNSKKEAKLNAAKLC 841 Query: 220 LKREGIW 226 L+ GI Sbjct: 842 LRALGIL 848 >gi|73999248|ref|XP_860148.1| PREDICTED: similar to staufen, RNA binding protein, homolog 2 isoform LL (A) isoform 3 [Canis familiaris] Length = 544 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 280 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 338 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 339 AAEAMLLQLG 348 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 QVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQEL 246 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|325296829|ref|NP_001191656.1| neuron-specific staufen [Aplysia californica] gi|59323978|gb|AAW84263.1| neuron-specific staufen [Aplysia californica] Length = 950 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 2/90 (2%) Query: 136 GTFVD-KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + +Q+A + + + L + A+ P Y + G F V VE Sbjct: 669 RNLIKSELQQQKADPNYGVGINPISRLIQIMQAQKKKEPVYTLVTERGLPRRREFIVQVE 728 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + G +K+ A++ AA +L+ G Sbjct: 729 VEDKT-CPGSGPNKKLAKRAAAEAMLQLLG 757 Score = 38.9 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +Y + GP H F V +++ S Sbjct: 361 QYTLVDEQGPAHKKTFYVKLKLGDEEY-SASGES 393 >gi|221040030|dbj|BAH11778.1| unnamed protein product [Homo sapiens] Length = 473 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V + G A G +K+ A++ Sbjct: 268 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVTV-GNEVATGTGPNKKIAKKN 326 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 327 AAEAMLLQLG 336 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 176 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 233 Query: 223 E 223 Sbjct: 234 L 234 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 106 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 141 >gi|291388131|ref|XP_002710684.1| PREDICTED: staufen homolog 2 isoform 2 [Oryctolagus cuniculus] Length = 504 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 202 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 260 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 261 AAEAMLLQLG 270 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 110 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 167 Query: 223 E 223 Sbjct: 168 L 168 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 40 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 75 >gi|291388129|ref|XP_002710683.1| PREDICTED: staufen homolog 2 isoform 1 [Oryctolagus cuniculus] Length = 570 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V P+YK+ SGP H F+V + + S + A+Q A + L Sbjct: 20 NRVQPQYKLLNESGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271 Query: 223 E 223 Sbjct: 272 L 272 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179 >gi|296480591|gb|DAA22706.1| staufen homolog 2 [Bos taurus] Length = 384 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|149721312|ref|XP_001491884.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen homolog 2 [Equus caballus] Length = 569 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V P+YK+ GP H F+V + + S + A+Q A + L Sbjct: 20 NRVQPQYKLLRERGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271 Query: 223 E 223 Sbjct: 272 L 272 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179 >gi|309362482|emb|CAP27969.2| hypothetical protein CBG_08071 [Caenorhabditis briggsae AF16] Length = 693 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 24/48 (50%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y + SGP H FTV + ++ +G S + A+Q AA L++ Sbjct: 83 YDLQDESGPAHKKLFTVRLVLNNEETFEGSGTSIKRAQQAAAETALEK 130 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + + + L + AK P +++ +G F + + G +G +KR A+ Sbjct: 395 HQINPVSRLIQVTQAKSRHHPTFELLSENGVSKYKEFVIQAK-YGEIVCEGKGPNKRLAK 453 Query: 213 QVAAAEVLKREG 224 + AA E+L G Sbjct: 454 RAAAEEMLDLIG 465 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 6/93 (6%) Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 A + ++ +R + ++ +++ E AH + ++ GP HD + V Sbjct: 256 ARQKLSRFSDRRFENTNYTQKSVISDIHEKAH-LLKLNVVFETLKEEGPPHDRVYVVRCA 314 Query: 195 I-----SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 A A G K+ A+Q A ++LK Sbjct: 315 FVSSNKEVKAEAIGKGKKKKVAQQEACTQLLKN 347 >gi|321463534|gb|EFX74549.1| hypothetical protein DAPPUDRAFT_324210 [Daphnia pulex] Length = 694 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + P+Y++T SGP H F V +++ S + A+ AA LK+ Sbjct: 103 LARHHKIQPQYRLTEESGPAHQKTFVVNLKLGEEQY-SATGQSIKKAQHAAAELALKK 159 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 10/95 (10%) Query: 136 GTFVDKYWKQRALKSGKFRRD-----AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 T +DK A + D + + E A T E+ V SGP H F Sbjct: 311 QTLIDKVQLDEAAVISEANTDSDLKSPVSLVHELALKLNL-TVEFTVLNESGPPHMRNFI 369 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKR 222 V ++ G QG K+ A++ AA + LK+ Sbjct: 370 VQCKL-GEVTTQGEGNCKKVAKRKAAEIMIDELKK 403 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDC 206 G +D ++L + A+ P + V G P P F V V + G A G+ Sbjct: 452 GTKPQDPISQLVQLQQARKEKEPVFTVLSERGIPRQSPEFVVEVAV-GSVTATGVGT 507 >gi|268576457|ref|XP_002643208.1| Hypothetical protein CBG08071 [Caenorhabditis briggsae] Length = 663 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 24/48 (50%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y + SGP H FTV + ++ +G S + A+Q AA L++ Sbjct: 51 YDLQDESGPAHKKLFTVRLVLNNEETFEGSGTSIKRAQQAAAETALEK 98 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + + + L + AK P +++ +G F + + G +G +KR A+ Sbjct: 370 HQINPVSRLIQVTQAKSRHHPTFELLSENGVSKYKEFVIQAK-YGEIVCEGKGPNKRLAK 428 Query: 213 QVAAAEVLKREG 224 + AA E+L G Sbjct: 429 RAAAEEMLDLIG 440 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + ++ GP HD + V A A G K+ A+Q A ++LK Sbjct: 264 LKLNVVFETLKEEGPPHDRVYVVRCAFVSSNKEVKAEAIGKGKKKKVAQQEACTQLLKN 322 >gi|114654623|ref|XP_510148.2| PREDICTED: dicer1 isoform 7 [Pan troglodytes] Length = 1715 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 G LS + VS ++ ++ L S + VS Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYE---RLEF 45 + EK+I Y F N++ L +A TH+S ++ E RL F Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITGKEPTTRLHF 1708 >gi|221361577|emb|CAX18337.1| dicel-like 2 [Nicotiana benthamiana] Length = 224 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 4/57 (7%) Query: 1 MSALRY---STLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGL 53 M+A + LE + Y F + SLL +ALTH S Y+RLEFLGD +L Sbjct: 168 MNAEKLVNVRYLESLLHYKFHDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDVVLDY 224 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 29/131 (22%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ--VAREL------- 91 E LE LGD L S LF +++ EG L+V+ NS++S + AR++ Sbjct: 22 ESLETLGDSFLKYAASIQLFKTYENHHEGLLTVKKNSIISNAALCKLGCARKIPGFIRNE 81 Query: 92 -----------------DLASFIRVSSDLRKDVCSFMTSIQ--ADVVESLIAALYLDGGI 132 + + + S T + ADVVE+LI A +L G Sbjct: 82 PFDLKGWLIPGDNSQVYNFDEEVLMPSVKMYSRGRQKTKSKRVADVVEALIGA-FLSSGG 140 Query: 133 EVAGTFVDKYW 143 EVA K+ Sbjct: 141 EVAALSFMKWL 151 >gi|157074142|ref|NP_001096783.1| double-stranded RNA-binding protein Staufen homolog 2 [Bos taurus] gi|151554636|gb|AAI49988.1| STAU2 protein [Bos taurus] Length = 538 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 37.4 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|213512316|ref|NP_001134804.1| Interferon-induced, double-stranded RNA-activated protein kinase [Salmo salar] gi|209736186|gb|ACI68962.1| Interferon-induced, double-stranded RNA-activated protein kinase [Salmo salar] Length = 181 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 156 DAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + ++L E+A + + +++ GPDH FT+ V I G A G+ +K+ A++ Sbjct: 5 NYISKLFEYAQRQGQISDIKFEEVGTDGPDHLKTFTLRVVIKGHAYPNGVGKTKKEAKRN 64 Query: 215 AAAEVL 220 AA L Sbjct: 65 AAKHAL 70 Score = 35.1 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 12/68 (17%) Query: 157 AKTELQEWAHAKFGVTPEYKVTF--RSGPDHDPRFTVVV---EISGLAPAQGMDCSKRAA 211 + L E + K R GP++ T + +G +K+ A Sbjct: 107 YVSWLNEHSQKNKLSL---KALEGARVGPNN----TSQCCRYVVGEKEYPEGFGNTKKEA 159 Query: 212 EQVAAAEV 219 ++ AA +V Sbjct: 160 KEEAAMQV 167 >gi|19264083|gb|AAH25118.1| Stau2 protein [Mus musculus] Length = 479 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|12853295|dbj|BAB29708.1| unnamed protein product [Mus musculus] Length = 206 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 1 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 59 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 60 AAEAMLLQLG 69 >gi|256419001|ref|NP_001157855.1| double-stranded RNA-binding protein Staufen homolog 2 isoform d [Homo sapiens] Length = 398 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 134 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 192 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 193 AAEAMLLQLG 202 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 42 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 99 Query: 223 E 223 Sbjct: 100 L 100 >gi|221039518|dbj|BAH11522.1| unnamed protein product [Homo sapiens] Length = 398 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 134 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 192 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 193 AAEAMLLQLG 202 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 42 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 99 Query: 223 E 223 Sbjct: 100 L 100 >gi|332826415|ref|XP_003311808.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 [Pan troglodytes] Length = 474 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 210 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 268 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 269 AAEAMLLQLG 278 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 118 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 175 Query: 223 E 223 Sbjct: 176 L 176 Score = 37.0 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 48 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 83 >gi|332017864|gb|EGI58524.1| Protein SON [Acromyrmex echinatior] Length = 808 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAEQ 213 + + L E+ K P Y++ F SGPDH F V+++G+ + S K+ A+ Sbjct: 734 KHPVSLLGEYCTKKKLGAPVYELCFESGPDHRKNFLFKVKVNGIEYKPSVASSNKKQAKA 793 Query: 214 VAAAEVLKREGIW 226 AA L+ G+ Sbjct: 794 EAAQICLQNLGLL 806 >gi|109096950|ref|XP_001106036.1| PREDICTED: RISC-loading complex subunit TARBP2 [Macaca mulatta] Length = 366 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K PEY VT SGP H FT+ + G SK+ A++ AAA++L R Sbjct: 170 QKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNAAAKMLLR 224 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 31 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79 >gi|325120999|ref|NP_001191404.1| staufen [Aplysia californica] gi|37728097|gb|AAO38741.1| staufen [Aplysia californica] Length = 618 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 2/90 (2%) Query: 136 GTFVD-KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + +Q+A + + + L + A+ P Y + G F V VE Sbjct: 337 RNLIKSELQQQKADPNYGVGINPISRLIQIMQAQKKKEPVYTLVTERGLPRRREFIVQVE 396 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + G +K+ A++ AA +L+ G Sbjct: 397 VEDKT-CPGSGPNKKLAKRAAAEAMLQLLG 425 Score = 38.9 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +Y + GP H F V +++ S Sbjct: 29 QYTLVDEQGPAHKKTFYVKLKLGDEEY-SASGES 61 >gi|145517933|ref|XP_001444844.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|74830355|emb|CAI39054.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia] gi|124412277|emb|CAK77447.1| unnamed protein product [Paramecium tetraurelia] Length = 632 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 20/133 (15%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 ++E + Y + E+A+ SS + ++ +YE LE LGD +L +I+ +F + Sbjct: 334 SVESILNYQ-----VPEEAIVTSSFN--FKRNYENLEVLGDSVLKYVITADIFKQYKLLD 386 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFI--------RVSSDLRKDVCSFMTSIQ---- 115 EGE++ + L+ +Q+ +L L FI ++ + L D+ S Sbjct: 387 EGEMTSLRSRLIMNTFLAQLFEQLGLEQFIINQDLHFKQIKNPLVNDIISSENKQLQISQ 446 Query: 116 -ADVVESLIAALY 127 AD+ E++I ++ Sbjct: 447 KADIYEAIIGGVF 459 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 28/148 (18%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL-------ISTLLFNHFDS-- 65 Y F N L E A+ + Y+RLEFLGD + LL ++ + Sbjct: 504 YKFNNPQLYEIAI--------NPQYYDRLEFLGDAAIELLVISYAFRVAREKQQKNPNWS 555 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 G LS L+ + + ++ L K + + + D+ +S+ AA Sbjct: 556 LNPGLLSTWKQYLLGNKFMGEQTIKMGL-----------KPQVNEIPKLYGDIFQSVAAA 604 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF 153 + LD G +K+ + + Sbjct: 605 ILLDSGWRGLNQVYGSLYKKYLDEIIEL 632 >gi|296226704|ref|XP_002759045.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform 2 [Callithrix jacchus] Length = 538 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 37.0 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|157116156|ref|XP_001658385.1| staufen [Aedes aegypti] gi|108876611|gb|EAT40836.1| staufen [Aedes aegypti] Length = 1103 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 1/85 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K++ + + + L + A+ P Y + G F + V SG + Sbjct: 712 RNLIKEKGDEDPTGMVNPISRLMQIQQARKEKEPVYTLVEERGVARRREFIMEVSASGKS 771 Query: 200 PAQGMDCSKRAAEQVAAAEVLKREG 224 A G+ +K+ A++ AA +L G Sbjct: 772 -ATGIGPTKKLAKKEAAENLLVMLG 795 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +Y++T SGP H RFTV +++ S + A+ AA E + Sbjct: 360 QYRLTCESGPAHKKRFTVTLKLGDEEY-TAEGPSIKKAQHSAAHEAI 405 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 5/79 (6%) Query: 148 LKSGKFRRDAKTEL---QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + S D K+ + E A + T +++V GP H FT + ++ G +G Sbjct: 606 IDSDDPNSDLKSPISLVHEMALKRKL-TVQFEVHGEKGPPHMKVFTTLCKV-GSIVTEGE 663 Query: 205 DCSKRAAEQVAAAEVLKRE 223 K+ +++ AA ++L Sbjct: 664 GNGKKLSKKRAAEKMLDEL 682 >gi|71896437|ref|NP_001026112.1| double-stranded RNA-binding protein Staufen homolog 2 [Gallus gallus] gi|53130432|emb|CAG31545.1| hypothetical protein RCJMB04_7n10 [Gallus gallus] Length = 472 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V+I G G +K+ A++ Sbjct: 378 MNPISRLAQIQQAKKEKEPEYVLLSERGMPRRREFVMQVKI-GNEITTGTGPNKKIAKRN 436 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 437 AAEAMLLQLG 446 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + P+YK+ GP H FTV + + + S + A+ AA++ L Sbjct: 92 NRIQPQYKLLNERGPAHAKMFTVQLTLGEQTW-EAEGSSIKKAQHAAASKALN 143 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 290 KRNIPVSFEVIKESGPPHMKSFVTRVTV-GEFTAEGEGNSKKLSKERAAMSVLQEL 344 Score = 36.6 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 216 KIFYVQLTVGNSEFF-GEGKTRQAARHNAAMKALQAL 251 >gi|47229756|emb|CAG06952.1| unnamed protein product [Tetraodon nigroviridis] Length = 665 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V ++G + A+GM SK+ A++ Sbjct: 380 MNPISRLAQIQQAKKEKEPEYSMVTERGLPRRREFVMQVTVNGQS-AEGMGPSKKVAKRN 438 Query: 215 AAAEVLKREG 224 AA ++L+ G Sbjct: 439 AAEKMLELLG 448 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P+YK+ GP H F+V + + + S + A+ AAA L Sbjct: 87 NKIQPQYKLLCEQGPAHSKIFSVQLTLGDQYW-EAEGPSIKKAQHSAAASAL 137 >gi|238480134|ref|NP_001154686.1| DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4); double-stranded RNA binding / protein binding [Arabidopsis thaliana] gi|197267565|dbj|BAG69145.1| dsRNA-binding protein [Arabidopsis thaliana] gi|332646874|gb|AEE80395.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana] Length = 329 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE A + + P Y T SGP H P FT VE +G + +K+ AE AA Sbjct: 83 YKNLLQEIAQKESSLLPFYA-TATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAA 141 Query: 217 AEV 219 Sbjct: 142 KVA 144 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K +LQ +A P Y R GP H PRF V G + ++AE A Sbjct: 5 YKGQLQAYALQHNLELPVYA-NEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63 Query: 216 AAEV 219 A Sbjct: 64 AKIA 67 >gi|7362760|emb|CAB83130.1| putative protein [Arabidopsis thaliana] Length = 345 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE A + + P Y T SGP H P FT VE +G + +K+ AE AA Sbjct: 73 YKNLLQEIAQKESSLLPFYA-TATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAA 131 Query: 217 AEV 219 Sbjct: 132 KVA 134 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K +LQ +A P Y R GP H PRF V G + ++AE A Sbjct: 5 YKGQLQAYALQHNLELPVYA-NEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63 Query: 216 AAEV 219 A Sbjct: 64 AKIA 67 >gi|22331912|ref|NP_191839.2| DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4); double-stranded RNA binding / protein binding [Arabidopsis thaliana] gi|42572769|ref|NP_974480.1| DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4); double-stranded RNA binding / protein binding [Arabidopsis thaliana] gi|75244610|sp|Q8H1D4|DRB4_ARATH RecName: Full=Double-stranded RNA-binding protein 4; AltName: Full=dsRNA-binding protein 4; Short=AtDRB4 gi|23297784|gb|AAN13025.1| unknown protein [Arabidopsis thaliana] gi|332646872|gb|AEE80393.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana] gi|332646873|gb|AEE80394.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana] Length = 355 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE A + + P Y T SGP H P FT VE +G + +K+ AE AA Sbjct: 83 YKNLLQEIAQKESSLLPFYA-TATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAA 141 Query: 217 AEV 219 Sbjct: 142 KVA 144 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K +LQ +A P Y R GP H PRF V G + ++AE A Sbjct: 5 YKGQLQAYALQHNLELPVYA-NEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63 Query: 216 AAEV 219 A Sbjct: 64 AKIA 67 >gi|18389232|gb|AAL67059.1| unknown protein [Arabidopsis thaliana] Length = 355 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE A + + P Y T SGP H P FT VE +G + +K+ AE AA Sbjct: 83 YKNLLQEIAQKESSLLPFYA-TATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAA 141 Query: 217 AEV 219 Sbjct: 142 KVA 144 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K +LQ +A P Y R GP H PRF V G + ++AE A Sbjct: 5 YKGQLQAYALQHNLELPVYA-NEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63 Query: 216 AAEV 219 A Sbjct: 64 AKIA 67 >gi|242069683|ref|XP_002450118.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor] gi|241935961|gb|EES09106.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor] Length = 118 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A T EY GP H+P F V ++ G S++AAEQ Sbjct: 33 FKSRLQEYAQKVGITTLEYHTLKE-GPSHEPVFKSTVVVNNTRYESLPGF-FSRKAAEQS 90 Query: 215 AAAEVL 220 AA L Sbjct: 91 AAEVAL 96 >gi|296226702|ref|XP_002759044.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform 1 [Callithrix jacchus] Length = 570 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V P+YK+ GP H F+V + + S + A+Q A + L Sbjct: 20 NRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271 Query: 223 E 223 Sbjct: 272 L 272 Score = 37.0 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179 >gi|148225849|ref|NP_001086918.1| staufen, RNA binding protein, homolog 2 [Xenopus laevis] gi|83318414|gb|AAI08851.1| Stau2-b protein [Xenopus laevis] Length = 689 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Query: 132 IEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 IE ++ + K S ++ + + + L + AK PEY + G F Sbjct: 364 IEKPRIYIKRRPKNIIKASPEYGQGMNPISRLAQIQQAKKEKEPEYVLLSERGIQRRREF 423 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + V++ G A G +K+ A++ AA +L + G Sbjct: 424 IMQVKV-GEEAATGTGPNKKTAKRNAAEAMLLQLG 457 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P+YK+ GP H FTV + + Q S + A+ AA+ L Sbjct: 103 NRIQPQYKLLDERGPAHSKLFTVQLTLGEQTW-QAESTSIKKAQHAAASLAL 153 Score = 42.4 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 E + + ++V SGP H F V + G A+G S Sbjct: 297 EISLKRNLPL-SFEVIKESGPPHMKSFVTRVMV-GEFTAEGEGNS 339 >gi|326917772|ref|XP_003205170.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2-like, partial [Meleagris gallopavo] Length = 479 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G G +K+ A++ Sbjct: 378 MNPISRLAQIQQAKKEKEPEYVLLSERGMPRRREFVMQVKV-GNEITTGTGPNKKIAKRN 436 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 437 AAEAMLLQLG 446 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + P+YK+ GP H FTV + + + S + A+ AA++ L Sbjct: 92 NRIQPQYKLLNERGPAHAKMFTVQLTLGEQTW-EAEGSSIKKAQHAAASKALN 143 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 290 KRNIPVSFEVIKESGPPHMKSFVTRVTV-GEFTAEGEGNSKKLSKKRAAMSVLQEL 344 Score = 36.6 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 216 KIFYVQLTVGNSEFF-GEGKTRQAARHNAAMKALQAL 251 >gi|296226706|ref|XP_002759046.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform 3 [Callithrix jacchus] Length = 504 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 202 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 260 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 261 AAEAMLLQLG 270 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 110 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 167 Query: 223 E 223 Sbjct: 168 L 168 Score = 37.0 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 40 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 75 >gi|58332604|ref|NP_001011376.1| double-stranded RNA-binding protein Staufen homolog 2 [Xenopus (Silurana) tropicalis] gi|73919461|sp|Q5M7M7|STAU2_XENTR RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2 gi|56788853|gb|AAH88555.1| staufen, RNA binding protein, homolog 2 [Xenopus (Silurana) tropicalis] Length = 624 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Query: 132 IEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 IE ++ + K S ++ + + + L + AK PEY + G F Sbjct: 299 IEKPRIYIKRRPKNIIKASPEYGQGMNPISRLAQIQQAKKEKEPEYVLLSERGIQRRREF 358 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + V++ G A G +K+ A++ AA +L + G Sbjct: 359 VMQVKV-GEETATGTGPNKKTAKRNAAEAMLLQLG 392 Score = 55.9 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P+YK+ GP H FTV + + Q S + A+ AA+ L Sbjct: 20 NRIQPQYKLLDERGPAHSKLFTVQLTLGEQTW-QAESTSIKKAQHAAASLAL 70 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 E + + ++V SGP H F V + G A+G S Sbjct: 232 EISLKRNLSL-SFEVIKESGPPHMKSFVTRVTV-GEFTAEGEGNS 274 >gi|148682396|gb|EDL14343.1| staufen (RNA binding protein) homolog 2 (Drosophila), isoform CRA_a [Mus musculus] Length = 370 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|162287083|ref|NP_001104742.1| double-stranded RNA-binding protein Staufen homolog 2 isoform 2 [Mus musculus] gi|23507045|gb|AAN37929.1|AF459100_1 double-stranded RNA-binding protein Staufen2 short isoform [Mus musculus] Length = 538 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 37.4 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|148682397|gb|EDL14344.1| staufen (RNA binding protein) homolog 2 (Drosophila), isoform CRA_b [Mus musculus] Length = 402 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P+YK+ SGP H F+V + + S + A+Q A + L Sbjct: 20 HSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271 Query: 223 E 223 Sbjct: 272 L 272 Score = 37.4 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179 >gi|16307507|gb|AAH10300.1| Stau2 protein [Mus musculus] Length = 533 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 269 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 327 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 328 AAEAMLLQLG 337 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 177 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 234 Query: 223 E 223 Sbjct: 235 L 235 Score = 37.4 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 107 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 142 >gi|194018455|ref|NP_079579.2| double-stranded RNA-binding protein Staufen homolog 2 isoform 3 [Mus musculus] gi|73919459|sp|Q8CJ67|STAU2_MOUSE RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2 gi|23507043|gb|AAN37928.1|AF459099_1 double-stranded RNA-binding protein Staufen2 long isoform [Mus musculus] Length = 570 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P+YK+ SGP H F+V + + S + A+Q A + L Sbjct: 20 HSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271 Query: 223 E 223 Sbjct: 272 L 272 Score = 37.4 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179 >gi|58264874|ref|XP_569593.1| hypothetical protein CNC03670 [Cryptococcus neoformans var. neoformans JEC21] gi|57225825|gb|AAW42286.1| hypothetical protein CNC03670 [Cryptococcus neoformans var. neoformans JEC21] Length = 875 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 22/129 (17%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR---- 74 + L +ALT S + +YERLE LGD +L I+ ++ H A E S++ Sbjct: 448 HPELALQALTAPSSQNVTPWTYERLEILGDTLLKFFITIHVYLHGGGANSREDSLKVWQD 507 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIE 133 + LVS T + A +L L F+ AD+VE++I A Y D + Sbjct: 508 RHKLVSNRTLTANAIKLGLVEFL-----------------LADIVEAIIGASYGRDKNFD 550 Query: 134 VAGTFVDKY 142 + + Sbjct: 551 NVISTLIHL 559 Score = 66.3 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 71/252 (28%), Gaps = 48/252 (19%) Query: 11 KRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 + +GY F + E + S+S+ + E + LG+ +L L + L + Sbjct: 604 EILGYKFKRKRRYEDVI---SMSNQPHARRIRENYKMLGNAVLDLHVIEFLLAKYPEEGP 660 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS--------------------------SD 102 G LS + +A EL L ++ SD Sbjct: 661 GSLSNMKTFRTTEGLRCALATELGLQDLLKDGDERAERELGRATYFMRDAKAQADAGLSD 720 Query: 103 LRKDVCSFMTSIQADVV-----ESLIAALYLDGGI--EVAGTFVDKYWKQRALK----SG 151 + + + + E + A++ D G E D + K Sbjct: 721 EEQGGIHYWDGVAVNHFTGSIIEVIYGAIFQDSGFSLEHTQRIFDNHIVPFIEKYCKGPS 780 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K L W AK Y GP VV A+ + A Sbjct: 781 ASDLHPKGLLTRWMQAKGCA---YWKLDAVGP---KLCEGVVTCHDQDVARCKAFTTHVA 834 Query: 212 EQVAAAEVLKRE 223 + E +KR Sbjct: 835 VRNVCEEAIKRL 846 >gi|326511242|dbj|BAJ87635.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 527 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE A P Y T RSG H P FT VE++G+ +K+ AE+ AA Sbjct: 88 YKNLLQEVAQRVGAPLPSY-TTERSGLGHLPVFTCTVELAGITFTGDHAKNKKQAEKNAA 146 Query: 217 AEV---LKRE 223 + LK+ Sbjct: 147 SAAWSSLKQL 156 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 K +LQE A P Y R GPDH PRF V +G Sbjct: 2 YKNQLQELAQRSCFNLPAYTCL-REGPDHAPRFKAAVIFNGE 42 >gi|330930999|ref|XP_003303230.1| hypothetical protein PTT_15361 [Pyrenophora teres f. teres 0-1] gi|311320897|gb|EFQ88677.1| hypothetical protein PTT_15361 [Pyrenophora teres f. teres 0-1] Length = 914 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 16/162 (9%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--------YQESYERLEFLGDRILGL 53 +A R +E+ IGY F ++ +AL ++ + ++ RL LGDR L L Sbjct: 84 AAARVGRVEESIGYTFKHKLYCIEALKQTNSTTPLYFQGVAINTDNNRRLALLGDRALDL 143 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +S + F + + + V+ + +++L + + + + Sbjct: 144 ALSEIWF--YTGNTLADYTAMSLKTVTRAALNTQGLKINLDKNLILVAGATGAT----PN 197 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 A+ E+L+ A+Y+D G +V V + L +F R Sbjct: 198 QVAETFEALLGAVYVDSGHDVEA--VKRVINTVQLDQNRFLR 237 >gi|307167407|gb|EFN60992.1| Interferon-inducible double stranded RNA-dependent protein kinase activator A-like protein [Camponotus floridanus] Length = 341 Score = 69.7 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + +A ELQ+ + PEY +T +GP H FT+ ++S +G+ Sbjct: 99 PPKIPANVPFVNAIGELQDLCAENNLMEPEYVLTKDTGPPHARIFTIQCKVSNFVE-EGV 157 Query: 205 DCSKRAAEQVAAAEVLKR 222 +K+ A+ AA ++++R Sbjct: 158 QSTKKQAKHEAARKMVER 175 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE K G+ P+Y++ G H FT V GL A G K+ A+ AA Sbjct: 5 PVSILQEMM-VKQGMVPDYELIHNGGGRHVNTFTYRVICDGLT-AIGSGRCKKEAKHEAA 62 Query: 217 AEVL 220 +L Sbjct: 63 KAML 66 >gi|328770010|gb|EGF80052.1| hypothetical protein BATDEDRAFT_24776 [Batrachochytrium dendrobatidis JAM81] Length = 380 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 86/240 (35%), Gaps = 53/240 (22%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S + ++RLEFLGD +L L+ L+ G LS LV + + V+ + Sbjct: 52 SGTGKLGSMFQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQ 111 Query: 91 LDLASFIRV--------------------------------------SSDLRKDVCSFMT 112 + L +IR S+ L + + Sbjct: 112 IGLVKYIRHTDMTMEAAIGRFATWVQGYLASESSTPLPISTSATQIASARLFWNKGNTAP 171 Query: 113 SIQADVVESLIAALYLDGGIEVAG-------TFVDKYWKQRALKSGKFRR---DAKTELQ 162 DV ES++ A+++D ++ T + +W + G + EL+ Sbjct: 172 KTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELR 231 Query: 163 EWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +++ F V +Y T+ G H T + + AQ + +R A++ AA ++ Sbjct: 232 TLSYSLFKCVKIDY--TYEYGL-HGGT-TATITYHNMVLAQCLGTGQRDAKKAAACTAVE 287 >gi|222630219|gb|EEE62351.1| hypothetical protein OsJ_17140 [Oryza sativa Japonica Group] Length = 606 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE AH P Y RSGP H P FT VE++G G +K+ A++ A Sbjct: 101 YKNLLQETAHRAGLKLPVYTTI-RSGPGHTPVFTCTVELAG-MTFTGNPGKTKKQAQKNA 158 Query: 216 AAEV---LKRE 223 A LK+ Sbjct: 159 AMAAWSELKQL 169 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVA 215 K +LQE A P Y R GPDH PRF V +G + R AE A Sbjct: 15 YKNQLQELAQRSCFNLPSYACI-REGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 73 Query: 216 AAEVLKRE 223 A L Sbjct: 74 AEVALNEL 81 >gi|115462131|ref|NP_001054665.1| Os05g0150400 [Oryza sativa Japonica Group] gi|122169532|sp|Q0DKP4|DRB2_ORYSJ RecName: Full=Double-stranded RNA-binding protein 2; AltName: Full=dsRNA-binding protein 2; AltName: Full=dsRNA-binding protein 3; Short=OsDRB3 gi|113578216|dbj|BAF16579.1| Os05g0150400 [Oryza sativa Japonica Group] Length = 593 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE AH P Y RSGP H P FT VE++G G +K+ A++ A Sbjct: 88 YKNLLQETAHRAGLKLPVYTTI-RSGPGHTPVFTCTVELAG-MTFTGNPGKTKKQAQKNA 145 Query: 216 AAEV---LKRE 223 A LK+ Sbjct: 146 AMAAWSELKQL 156 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVA 215 K +LQE A P Y R GPDH PRF V +G + R AE A Sbjct: 2 YKNQLQELAQRSCFNLPSYACI-REGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60 Query: 216 AAEVLKRE 223 A L Sbjct: 61 AEVALNEL 68 >gi|322712474|gb|EFZ04047.1| 60S ribosomal protein L3 [Metarhizium anisopliae ARSEF 23] Length = 392 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 74/259 (28%), Gaps = 60/259 (23%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +AL S + + L FLG I+ + L + L + E Sbjct: 98 LARALITPSADANGSFNNSNLAFLGSTIINYHVLEYLVCKWPRLPMAILYEALRAFSGQE 157 Query: 83 TCSQVARELDLAS----------------------------FIRVSSDLRKDVCSFMTS- 113 + QVAR + + ++R M+S Sbjct: 158 SLQQVARRWGVEAAAAPGEEVDAGLLQWKADGVQLVNTRWGYVRSEVGKDSSYRRGMSSR 217 Query: 114 -IQADVV---------------------------ESLIAALYLDGGIEVAGTFVDKYWKQ 145 + DV ++++ ++Y G E A +FV + Sbjct: 218 VVLDDVFGDALSKPDNAGRQGVDSLQNEAFASFVQAVVGSIYAHCGREAAKSFVTSHILS 277 Query: 146 RALKSGKFRRD--AKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQ 202 R + + EL + P ++ +G P F V + + Sbjct: 278 RQFDPSELFQFQLPTRELAMLCAREGFEAPVARLESETGRLSKTPVFVVGIYSGKEKLGE 337 Query: 203 GMDCSKRAAEQVAAAEVLK 221 G S A + A+ VLK Sbjct: 338 GAGPSLDIARRKASMNVLK 356 >gi|134109497|ref|XP_776863.1| hypothetical protein CNBC3540 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259543|gb|EAL22216.1| hypothetical protein CNBC3540 [Cryptococcus neoformans var. neoformans B-3501A] Length = 875 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 22/129 (17%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR---- 74 + L +ALT S + +YERLE LGD +L I+ ++ H A E S++ Sbjct: 448 HPELALQALTAPSSQNVTPWTYERLEILGDTLLKFFITIHVYLHGGGANSREDSLKVWQD 507 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIE 133 + LVS T + A +L L F+ AD+VE++I A Y D + Sbjct: 508 RHKLVSNRTLTANAIKLGLVEFL-----------------LADIVEAIIGASYGRDKNFD 550 Query: 134 VAGTFVDKY 142 + + Sbjct: 551 NVISTLIHL 559 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 71/252 (28%), Gaps = 48/252 (19%) Query: 11 KRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 + +GY F + E + S+S+ + E + LG+ +L L + L + Sbjct: 604 EILGYKFKRKRRYEDVI---SMSNQPHARRIRENYKMLGNAVLDLHVIEFLLAKYPEEGP 660 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS--------------------------SD 102 G LS + +A EL L ++ S+ Sbjct: 661 GSLSNMKTFRTTEGLRCALATELGLQDLLKDGDERAERELGRATYFMRDAKAQADAGLSE 720 Query: 103 LRKDVCSFMTSIQADVV-----ESLIAALYLDGGI--EVAGTFVDKYWKQRALK----SG 151 + + + + E + A++ D G E D + K Sbjct: 721 EEQGGIHYWDGVAVNHFTGSIIEVIYGAIFQDSGFSLEHTQRIFDNHIVPFIEKYCKGPS 780 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K L W AK Y GP VV A+ + A Sbjct: 781 ASDLHPKGLLTRWMQAKGCA---YWKLDAVGP---KLCEGVVTCHDQDVARCKAFTTHVA 834 Query: 212 EQVAAAEVLKRE 223 + E +KR Sbjct: 835 VRNVCEEAIKRL 846 >gi|158186641|ref|NP_001103376.1| double-stranded RNA-binding protein Staufen homolog 1 isoform 1 [Mus musculus] gi|123240382|emb|CAM17301.1| staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus] Length = 495 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 82/200 (41%), Gaps = 23/200 (11%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELD---LAS 95 ERLE + G N + ++ E++++ N V+ E+ +QVARE + + Sbjct: 79 ERLE-----VNGREAEEENLNKSEISQVFEIALKRNLPVNFESFLLTQVARESGPPHMKN 133 Query: 96 FI-RVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 F+ RVS + + + +++ L + V K+++ + K Sbjct: 134 FVTRVSVGEFVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVER-VKPRIKKKSQPTCK 192 Query: 153 FR--------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ G A+G+ Sbjct: 193 LQTAPDYGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGV 251 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 252 GTNKKVAKRNAAENMLEILG 271 >gi|74219068|dbj|BAE26678.1| unnamed protein product [Mus musculus] Length = 592 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 82/200 (41%), Gaps = 23/200 (11%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELD---LAS 95 ERLE + G N + ++ E++++ N V+ E+ +QVARE + + Sbjct: 176 ERLE-----VNGREAEEENLNKSEISQVFEIALKRNLPVNFESFLLTQVARESGPPHMKN 230 Query: 96 FI-RVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 F+ RVS + + + +++ L + V K+++ + K Sbjct: 231 FVTRVSVGEFVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVER-VKPRIKKKSQPTCK 289 Query: 153 FR--------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ G A+G+ Sbjct: 290 LQTAPDYGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGV 348 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 349 GTNKKVAKRNAAENMLEILG 368 >gi|74198083|dbj|BAE35221.1| unnamed protein product [Mus musculus] Length = 575 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 82/200 (41%), Gaps = 23/200 (11%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELD---LAS 95 ERLE + G N + ++ E++++ N V+ E+ +QVARE + + Sbjct: 159 ERLE-----VNGREAEEENLNKSEISQVFEIALKRNLPVNFESFLLTQVARESGPPHMKN 213 Query: 96 FI-RVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 F+ RVS + + + +++ L + V K+++ + K Sbjct: 214 FVTRVSVGEFVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVER-VKPRIKKKSQPTCK 272 Query: 153 FR--------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ G A+G+ Sbjct: 273 LQTAPDYGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGV 331 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 332 GTNKKVAKRNAAENMLEILG 351 >gi|74145338|dbj|BAE36128.1| unnamed protein product [Mus musculus] Length = 583 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 82/200 (41%), Gaps = 23/200 (11%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELD---LAS 95 ERLE + G N + ++ E++++ N V+ E+ +QVARE + + Sbjct: 167 ERLE-----VNGREAEEENLNKSEISQVFEIALKRNLPVNFESFLLTQVARESGPPHMKN 221 Query: 96 FI-RVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 F+ RVS + + + +++ L + V K+++ + K Sbjct: 222 FVTRVSVGEFVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVER-VKPRIKKKSQPTCK 280 Query: 153 FR--------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ G A+G+ Sbjct: 281 LQTAPDYGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGV 339 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 340 GTNKKVAKRNAAENMLEILG 359 >gi|170037189|ref|XP_001846442.1| tar RNA binding protein [Culex quinquefasciatus] gi|167880196|gb|EDS43579.1| tar RNA binding protein [Culex quinquefasciatus] Length = 390 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + + LQE A+ P Y+ G H+ +FT+ + G SK+ Sbjct: 168 DEPSGNPIGWLQEMCMARRWPPPTYETEMEVGLPHERQFTIACAVL-KYREVGKGKSKKI 226 Query: 211 AEQVAAAEVLKRE 223 A++ AA + +R Sbjct: 227 AKRQAAQRMWQRL 239 Score = 44.3 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + LQE ++ G+TP+Y + G H+P F V A G Sbjct: 78 PISVLQELL-SRRGITPQYDLMQVEGAVHEPTFRYRVSYQDKD-AMGTG 124 >gi|157119564|ref|XP_001659426.1| tar RNA binding protein (trbp) [Aedes aegypti] gi|108875294|gb|EAT39519.1| tar RNA binding protein (trbp) [Aedes aegypti] Length = 329 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE A+ P Y+ G H+ +FT+ + G SK+ A++ AA + Sbjct: 165 LQEMCMARRWPPPTYETEMEVGLPHERQFTIACAVL-KYREVGKGKSKKIAKRQAAQRMW 223 Query: 221 KRE 223 +R Sbjct: 224 QRL 226 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 140 DKYWKQRALKSGKFRRD----AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 D + ALK+ + + LQE ++ G+TP+Y + G H+P F V Sbjct: 45 DALPIEEALKTELTGTNNMKTPISVLQELL-SRRGITPQYDLIQVEGAVHEPTFRYRVSY 103 Query: 196 SGLAPAQGMD 205 A G Sbjct: 104 QDKD-AMGTG 112 >gi|330933507|ref|XP_003304192.1| hypothetical protein PTT_16685 [Pyrenophora teres f. teres 0-1] gi|311319337|gb|EFQ87704.1| hypothetical protein PTT_16685 [Pyrenophora teres f. teres 0-1] Length = 591 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 16/162 (9%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--------YQESYERLEFLGDRILGL 53 +A R +E+ IGY F ++ +AL ++ + ++ RL LGDR L L Sbjct: 84 AAARVGRVEESIGYTFKHKLYCIEALKQTNSTTPLYFQGVAINTDNNRRLALLGDRALDL 143 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +S + F + + + V+ + +++L + + + + Sbjct: 144 ALSEIWF--YTGNTLADYTAMSLKTVTRAALNTQGLKINLDKNLILVAGATGAT----PN 197 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 A+ E+L+ A+Y+D G +V V + L +F R Sbjct: 198 QVAETFEALLGAVYVDSGHDVEA--VKRVINTVQLDQNRFLR 237 >gi|148985144|ref|ZP_01818383.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71] gi|147922589|gb|EDK73707.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71] Length = 79 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNH 62 L+ + Sbjct: 60 EYLYKN 65 >gi|50417953|gb|AAH77753.1| Stau2-B-prov protein [Xenopus laevis] Length = 644 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Query: 132 IEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 IE ++ + K S ++ + + + L + AK PEY + G F Sbjct: 319 IEKPRIYIKRRPKNIIKASPEYGQGMNPISRLAQIQQAKKEKEPEYVLLSERGIQRRREF 378 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + V++ G A G +K+ A++ AA +L + G Sbjct: 379 IMQVKV-GEEAATGTGPNKKTAKRNAAEAMLLQLG 412 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P+YK+ GP H FTV + + Q S + A+ AA+ L Sbjct: 58 NRIQPQYKLLDERGPAHSKLFTVQLTLGEQTW-QAESTSIKKAQHAAASLAL 108 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 E + + ++V SGP H F V + G A+G S Sbjct: 252 EISLKRNLPL-SFEVIKESGPPHMKSFVTRVMV-GEFTAEGEGNS 294 >gi|47210542|emb|CAF93934.1| unnamed protein product [Tetraodon nigroviridis] Length = 1479 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1348 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1405 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1406 VSNCNLYRLGKKKGLPSRMVVS 1427 >gi|297849274|ref|XP_002892518.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp. lyrata] gi|297338360|gb|EFH68777.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp. lyrata] Length = 376 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TP Y+ GP H F V ++G+ G +++AAEQ Sbjct: 16 FKSRLQEYAQKYKLQTPVYETVKE-GPSHKSFFQSTVILNGVRYNSLPGF-FNRKAAEQS 73 Query: 215 AAAEVLKRE 223 AA L+ Sbjct: 74 AAEVALQEL 82 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 24/63 (38%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y+ +FT VEI G+ +K+ AE A Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQRIETLGRATQFTCTVEIGGIKYTGAATRTKKDAEISAGR 162 Query: 218 EVL 220 L Sbjct: 163 TAL 165 >gi|241643146|ref|XP_002409536.1| secreted protein, putative [Ixodes scapularis] gi|215501378|gb|EEC10872.1| secreted protein, putative [Ixodes scapularis] Length = 353 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 22/149 (14%) Query: 15 YAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 YAF ++ LL +AL H + + S YE L+F+G L +++ + + ++ + Sbjct: 192 YAFKDQDLLIRALLHPAKARQLGSSISYEPLDFIGHFALHFVLARHMVRNGTRKEKASMH 251 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRK------------------DVCSFMTSI 114 + E C+ +A + L ++ + K + S Sbjct: 252 NLMTEALRQEACAFLAAKNHLDLYVFLDDGQEKRAMTEYATAARAQDYAGRSSLANQKSF 311 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYW 143 ++ +S+ A+Y+D G + +++ + Sbjct: 312 LHNIFKSVAGAVYVDSGYDP--DVLERIY 338 >gi|328771050|gb|EGF81090.1| hypothetical protein BATDEDRAFT_23768 [Batrachochytrium dendrobatidis JAM81] Length = 380 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 85/240 (35%), Gaps = 53/240 (22%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S + ++RLEFLGD +L L+ L+ G LS LV + + V+ + Sbjct: 52 SGTGKLGSMFQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQ 111 Query: 91 LDLASFIRVSSDLRK--------------------------------------DVCSFMT 112 + L +IR + + + + Sbjct: 112 IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARMFWNKGNTAP 171 Query: 113 SIQADVVESLIAALYLDGGIEVAG-------TFVDKYWKQRALKSGKFRR---DAKTELQ 162 DV ES++ A+++D ++ T + +W + G + EL+ Sbjct: 172 KTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELR 231 Query: 163 EWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +++ F V +Y T+ G H T + + AQ + +R A++ AA ++ Sbjct: 232 TLSYSLFKCVKIDY--TYEYGL-HGGT-TATITYHNMVLAQCLGTGQRDAKKAAACTAVE 287 >gi|328767757|gb|EGF77805.1| hypothetical protein BATDEDRAFT_27056 [Batrachochytrium dendrobatidis JAM81] Length = 380 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 85/240 (35%), Gaps = 53/240 (22%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S + ++RLEFLGD +L L+ L+ G LS LV + + V+ + Sbjct: 52 SGTGKLGSMFQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQ 111 Query: 91 LDLASFIRVSSDLRK--------------------------------------DVCSFMT 112 + L +IR + + + + Sbjct: 112 IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARMFWNKGNTAP 171 Query: 113 SIQADVVESLIAALYLDGGIEVAG-------TFVDKYWKQRALKSGKFRR---DAKTELQ 162 DV ES++ A+++D ++ T + +W + G + EL+ Sbjct: 172 KTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELR 231 Query: 163 EWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +++ F V +Y T+ G H T + + AQ + +R A++ AA ++ Sbjct: 232 TLSYSLFKCVKIDY--TYEYGL-HGGT-TATITYHNMVLAQCLGTGQRDAKKAAACTAVE 287 >gi|224146035|ref|XP_002325855.1| predicted protein [Populus trichocarpa] gi|222862730|gb|EEF00237.1| predicted protein [Populus trichocarpa] Length = 281 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQ+ A + P Y T +SG H P F VEI G+ +K+ AE AA Sbjct: 214 YKNLLQDMAQREGCGLPTY-FTEKSGEAHAPTFISTVEIDGVNFTGKEARNKKQAEMSAA 272 Query: 217 AEV 219 Sbjct: 273 KIA 275 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVA 215 K++LQ+ + + P+Y+VT G +H P F V + L S + A+ A Sbjct: 2 YKSKLQQLSQQRGWEIPKYEVTKE-GQEHSPHFYATVTVDATLFSTPFPSSSSKKAQNAA 60 Query: 216 AAEV 219 A Sbjct: 61 AKLA 64 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 K +LQ +A + P Y R GP H RF V ++G Sbjct: 136 FKNQLQTYAQKRNFTRPVYSC-ERVGPPHAIRFKCKVTVNGQTY 178 >gi|45387553|ref|NP_991124.1| double-stranded RNA-binding protein Staufen homolog 1 [Danio rerio] gi|40807139|gb|AAH65333.1| Staufen, RNA binding protein, homolog 1 (Drosophila) [Danio rerio] Length = 636 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V ++G A+GM SK+ A++ Sbjct: 320 MNPISRLAQIQQAKKEKEPEYTLVTERGLPRRREFVMQVSVAGQN-AEGMGPSKKVAKRN 378 Query: 215 AAAEVLKREG 224 AA ++L+ G Sbjct: 379 AAEKMLELLG 388 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 10/90 (11%) Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHA-----KFGVTPEYKVTFRSGPDHDPRFTVVV 193 + + + + + + K+ E + K + +++V +G H F V V Sbjct: 200 ILQQITEMTDEPAQENLN-KS---EISQVFEIALKRNMPVDFEVLKEAGAPHMKSFVVRV 255 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + G +G SK+ A++ AA VL+ Sbjct: 256 VV-GEFAGEGEGKSKKIAKKQAAIAVLEEL 284 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + PEYK+ GP H F+V + + S + A+ AA+ L + Sbjct: 20 NKIQPEYKLLSEEGPAHSKIFSVRLTLGDQHW-DAEGTSIKKAQHSAASSALAQ 72 >gi|321476628|gb|EFX87588.1| hypothetical protein DAPPUDRAFT_221551 [Daphnia pulex] Length = 200 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L EW + P+Y+V SGP H + + ++ +G SK+AA+ VAA ++L Sbjct: 134 LTEWCLTRLSNLPDYRVVRTSGPSHSKTYFMTCKLGDRV-TEGEGKSKKAAKNVAAGKML 192 Query: 221 K 221 + Sbjct: 193 Q 193 Score = 40.1 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAA 217 + E Y + G H F + + + L + +G+ +K A+ AA Sbjct: 19 SVFHELCTKFDFGVAMYNLVAEQGEPHSRTFLMNLTVDMLGISVEGIGLTKMQAKHDAAY 78 Query: 218 EVL 220 +++ Sbjct: 79 KMM 81 >gi|321456685|gb|EFX67786.1| hypothetical protein DAPPUDRAFT_115168 [Daphnia pulex] Length = 216 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHF 63 + +E +GY F ++ L+ LTH S + + E +RLE LGD++LG L+ + + Sbjct: 31 LAVIETTLGYEFRHKENLKLPLTHISTNPNKVPSEDSDRLETLGDKLLGTLVMAICYTTC 90 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDL 93 + GEL+ + + +T + +A Sbjct: 91 PTYGAGELTNLTSMITCNDTFAVLAECAGF 120 >gi|302782383|ref|XP_002972965.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii] gi|302823467|ref|XP_002993386.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii] gi|300138817|gb|EFJ05571.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii] gi|300159566|gb|EFJ26186.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii] Length = 386 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE A P Y T RSGP H P FT VVE++G+ +K+ AE+ AA Sbjct: 88 FKNLLQETAQRANVPLPTYTTT-RSGPGHLPVFTCVVEVAGMNFTGDAGKTKKQAEKNAA 146 Query: 217 AEV---LKR 222 LK+ Sbjct: 147 MAAWATLKQ 155 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K +LQE A P Y R GPDH PRF V +G Sbjct: 2 YKNQLQELAQRSCFNLPAYSCI-REGPDHAPRFKAAVNFNGEV 43 >gi|293336145|ref|NP_001169453.1| hypothetical protein LOC100383324 [Zea mays] gi|224029475|gb|ACN33813.1| unknown [Zea mays] Length = 459 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMDCSKRAAEQ 213 K+ LQE + P Y+ T R GP H P F V ++G + +G S + A Sbjct: 2 YKSRLQELCQKRRWAPPLYEPT-REGPAHAPLFRATVVVNGERFSSRDEGE-KSLKEAYN 59 Query: 214 VAAAEVLKRE 223 +AA Sbjct: 60 LAAMAAFDNL 69 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 3/67 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQV 214 + K LQE + P Y T ++ F VEI G G +K+ AE Sbjct: 177 NYKNLLQELVQKEGFPLPIYN-TASDVSNYSAAFVSTVEIRG-VTFHGKPGNTKKQAEMN 234 Query: 215 AAAEVLK 221 AA + Sbjct: 235 AAKSAFE 241 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 10/69 (14%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-----APAQGMDCSKRAA 211 K++LQ +A + + P Y+ G H P F V I G + + A Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIH-GGSLHAPLFKSEVTIDGQTFESPEYC----HTMKEA 149 Query: 212 EQVAAAEVL 220 E VAA L Sbjct: 150 ETVAAKVAL 158 >gi|145506903|ref|XP_001439412.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|74830350|emb|CAI39053.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia] gi|124406596|emb|CAK72015.1| unnamed protein product [Paramecium tetraurelia] Length = 632 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 64/133 (48%), Gaps = 20/133 (15%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 ++E + Y ++E+A+ SS +++ +YE LE LGD +L +++ +F ++ Sbjct: 334 SVESILNYQ-----VVEEAIVTSS--SNFKRNYENLELLGDSVLKYVVTVDIFRQYELLD 386 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSFMTSI 114 EGE++ + L+ +Q+ +L L +I V+ + D S Sbjct: 387 EGEMTSLRSRLIMNTFLAQLFEQLGLQHYIINQDLHFKQIRNPLVNDMISSDNKQLQISQ 446 Query: 115 QADVVESLIAALY 127 +AD+ E+++ ++ Sbjct: 447 KADIYEAIVGGVF 459 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 28/142 (19%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF-------NHFDS-- 65 Y F N L E A+ Y+RLEFLGD + LL+ + +F + Sbjct: 504 YKFNNPQLFEIAI--------NPLQYDRLEFLGDAAIELLVISYIFRAAREKQQRNPNWI 555 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 G LS L+ + + + L I + + + D+ ES+ AA Sbjct: 556 LNPGLLSTWKQQLLGNKFMGEQTIRMGLKPHI-----------NEIPKLYGDIFESVAAA 604 Query: 126 LYLDGGIEVAGTFVDKYWKQRA 147 + LD G + +K+ Sbjct: 605 ILLDSGWKGLNQVYGSLYKKHM 626 >gi|170027969|ref|XP_001841869.1| staufen [Culex quinquefasciatus] gi|167868339|gb|EDS31722.1| staufen [Culex quinquefasciatus] Length = 939 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 1/85 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K+ + + + L + A+ PEY + G F + V SG Sbjct: 631 RNLIKENGEEDPLDMVNPISRLMQIQQARKEKEPEYTLVEERGMARRREFIMEVLASGKT 690 Query: 200 PAQGMDCSKRAAEQVAAAEVLKREG 224 A G+ +K+ A++ AA +L G Sbjct: 691 -ASGVGPTKKIAKKEAAESLLVMLG 714 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +Y++T SGP H RFTV +++ S + A+ AA E + Sbjct: 283 QYRLTGESGPAHKKRFTVTLKLGDEEY-TAEGPSIKKAQHSAANEAI 328 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + + + E A + + +++V GP H FT + ++ G +G K Sbjct: 529 DPNSELKSPISLVHELALKR-KMAVQFEVHSEKGPPHMKVFTTICKV-GTIVTEGEGNGK 586 Query: 209 RAAEQVAAAEVLKRE 223 + +++ AA ++L Sbjct: 587 KISKKRAAEKMLDEL 601 >gi|302793885|ref|XP_002978707.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii] gi|300153516|gb|EFJ20154.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii] Length = 675 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215 K LQE A P Y RSGP H P FT V + G G +K+ AE+ A Sbjct: 91 YKNLLQETAQRAGVPLPIYTTV-RSGPGHLPVFTCTVGVGG-MIFTGEAAKTKKQAEKNA 148 Query: 216 AAEV---LKR 222 A LK+ Sbjct: 149 AMTAWSSLKQ 158 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K +LQE A P Y R GPDH PRF V +G Sbjct: 5 FKNQLQELAQRSCFNLPAYSCI-REGPDHAPRFKATVNFNGEV 46 >gi|302805769|ref|XP_002984635.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii] gi|300147617|gb|EFJ14280.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii] Length = 190 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215 K LQE A P Y RSGP H P FT V + G G +K+ AE+ A Sbjct: 88 YKNLLQETAQRAGVPLPIYTTV-RSGPGHLPVFTCTVGVGG-MIFTGEAAKTKKQAEKNA 145 Query: 216 AAEV---LKR 222 A LK+ Sbjct: 146 AMTAWSSLKQ 155 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K +LQE A P Y R GPDH PRF V +G Sbjct: 2 FKNQLQELAQRSCFNLPAYSCI-REGPDHAPRFKATVNFNGEV 43 >gi|255578155|ref|XP_002529947.1| double-stranded RNA binding protein, putative [Ricinus communis] gi|223530577|gb|EEF32455.1| double-stranded RNA binding protein, putative [Ricinus communis] Length = 464 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 6/71 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE A P+Y TFRSG H P FT VE++G+ G +K+ AE+ A Sbjct: 88 YKNLLQEIAQRVGAPLPQY-TTFRSGLGHQPVFTGTVELAGIT-FTGEPAKNKKQAEKNA 145 Query: 216 AAEV---LKRE 223 A LK+ Sbjct: 146 AMAAWSSLKQL 156 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 10/69 (14%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-----PAQGMDCSKRAA 211 K +LQE A P Y R GPDH PRF V +G + R A Sbjct: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFECPHYC----STLRQA 56 Query: 212 EQVAAAEVL 220 E AA L Sbjct: 57 EHSAAEVAL 65 >gi|322789739|gb|EFZ14905.1| hypothetical protein SINV_08859 [Solenopsis invicta] Length = 885 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 K + LQE ++ P+Y + G H+ +FT+V I G SK+ Sbjct: 166 EEKIVNNPIGALQEMCMSRHWPPPKYTMEGEEGLPHERQFTIVCSIL-KYREVGQGKSKK 224 Query: 210 AAEQVAAAEVLKRE 223 A++ AA ++ + Sbjct: 225 VAKRQAAHKMWQAL 238 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG------LAPAQGMDCS 207 + LQE ++ G P+Y++ G H+P F V ++ + A G S Sbjct: 65 PVSVLQELL-SRRGTIPKYELVQIEGAIHEPTFRYRVTVTDVVEADPIVSAMGTGRS 120 >gi|255545984|ref|XP_002514052.1| conserved hypothetical protein [Ricinus communis] gi|223547138|gb|EEF48635.1| conserved hypothetical protein [Ricinus communis] Length = 412 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVA 215 K LQE+A K TP Y+ GP H+P F V ++ + +++AAEQ A Sbjct: 16 FKRRLQEYAQKKGLPTPLYETIKE-GPSHEPSFRSTVIVNDIRYDSLPGFLNRKAAEQSA 74 Query: 216 AAEVL 220 L Sbjct: 75 VEVAL 79 >gi|313243028|emb|CBY39738.1| unnamed protein product [Oikopleura dioica] Length = 324 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE K TP Y + G H P F + L +G SK++A+ AA Sbjct: 32 PISMLQELCQ-KLSKTPRYDLLTMEGRAHQPSFVFRCVVGDLT-GEGHGTSKKSAKHQAA 89 Query: 217 AEVLKRE 223 VL + Sbjct: 90 ENVLAQL 96 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE ++ P+Y + +GP H F + + G SK+ A++ AA +L Sbjct: 132 LQELVVSRGWRLPDYSLASEAGPSHKKEFIICCSVE-KLKEYGSGSSKKVAKRNAAGAML 190 Query: 221 KRE 223 R Sbjct: 191 SRM 193 >gi|320545024|ref|NP_001188796.1| loquacious, isoform D [Drosophila melanogaster] gi|318068436|gb|ADV37046.1| loquacious, isoform D [Drosophila melanogaster] Length = 359 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213 + LQE ++ G+TP Y++ G H+P F V A G SK+ A+ Sbjct: 136 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 194 Query: 214 VAAAEVLKRE 223 AA ++ + Sbjct: 195 AAARALIDKL 204 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 S K + LQE + P Y+ G H+ FT+ I G SK Sbjct: 243 ASDKTVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSK 301 Query: 209 RAAEQVAAAEVLKRE 223 + A+++AA + R Sbjct: 302 KIAKRLAAHRMWMRL 316 >gi|296237713|ref|XP_002763865.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2-like [Callithrix jacchus] Length = 399 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFMMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNE-FLGEGKTRQAARHNAAMKALQAL 147 >gi|85724940|ref|NP_001033903.1| loquacious, isoform C [Drosophila melanogaster] gi|63376297|gb|AAY40789.1| loquacious [Drosophila melanogaster] gi|84795302|gb|ABC65897.1| loquacious, isoform C [Drosophila melanogaster] Length = 383 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213 + LQE ++ G+TP Y++ G H+P F V A G SK+ A+ Sbjct: 136 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 194 Query: 214 VAAAEVLKRE 223 AA ++ + Sbjct: 195 AAARALIDKL 204 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 S K + LQE + P Y+ G H+ FT+ I G SK Sbjct: 243 ASDKTVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSK 301 Query: 209 RAAEQVAAAEVLKRE 223 + A+++AA + R Sbjct: 302 KIAKRLAAHRMWMRL 316 >gi|313229252|emb|CBY23838.1| unnamed protein product [Oikopleura dioica] Length = 343 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE K TP Y + G H P F + L +G SK++A+ AA Sbjct: 51 PISMLQELCQ-KLSKTPRYDLLTMEGRAHQPSFVFRCVVGDLT-GEGHGTSKKSAKHQAA 108 Query: 217 AEVLKRE 223 VL + Sbjct: 109 ENVLAQL 115 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE ++ P+Y + +GP H F + + G SK+ A++ AA +L Sbjct: 151 LQELVVSRGWRLPDYSLASEAGPSHKKEFIICCSVE-KLKEYGSGSSKKVAKRNAAGAML 209 Query: 221 KRE 223 R Sbjct: 210 SRM 212 >gi|156394093|ref|XP_001636661.1| predicted protein [Nematostella vectensis] gi|156223766|gb|EDO44598.1| predicted protein [Nematostella vectensis] Length = 414 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 5/67 (7%) Query: 158 KTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT L E+A + V PEY + G + F V ISG+ +G SKR A+Q Sbjct: 214 KTPVAILHEYAQRELKVKPEY--SHTEGNNAATPFVAEVRISGMVYGKGEGASKRLAKQH 271 Query: 215 AAAEVLK 221 AA L+ Sbjct: 272 AAETALE 278 >gi|114682575|ref|XP_001166678.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 3 [Pan troglodytes] Length = 502 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 23/200 (11%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELD---LAS 95 ERLE + G N + ++ E++++ N V+ E+ QVARE + + Sbjct: 86 ERLE-----VNGRESEEENLNKSEISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKN 140 Query: 96 FI-RVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 F+ +VS + + + +++ L + V K++ K Sbjct: 141 FVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVER-VKPRIKKKTKPIVK 199 Query: 153 FRR--------DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ G A+G Sbjct: 200 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGT 258 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 259 GTNKKVAKRNAAENMLEILG 278 >gi|82659091|ref|NP_001032405.1| double-stranded RNA-binding protein Staufen homolog 1 isoform c [Homo sapiens] gi|45758713|gb|AAS76636.1| staufen protein T5 variant [Homo sapiens] gi|45758715|gb|AAS76637.1| staufen protein T4 variant [Homo sapiens] gi|57208664|emb|CAI42820.1| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens] Length = 502 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 23/200 (11%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELD---LAS 95 ERLE + G N + ++ E++++ N V+ E+ QVARE + + Sbjct: 86 ERLE-----VNGRESEEENLNKSEISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKN 140 Query: 96 FI-RVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 F+ +VS + + + +++ L + V K++ K Sbjct: 141 FVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVER-VKPRIKKKTKPIVK 199 Query: 153 FRR--------DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ G A+G Sbjct: 200 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGT 258 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 259 GTNKKVAKRNAAENMLEILG 278 >gi|24584110|ref|NP_723813.1| loquacious, isoform A [Drosophila melanogaster] gi|7298056|gb|AAF53296.1| loquacious, isoform A [Drosophila melanogaster] gi|71733134|gb|AAZ40192.1| R3D1-S [Drosophila melanogaster] Length = 419 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213 + LQE ++ G+TP Y++ G H+P F V A G SK+ A+ Sbjct: 136 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 194 Query: 214 VAAAEVLKRE 223 AA ++ + Sbjct: 195 AAARALIDKL 204 Score = 66.3 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 S K + LQE + P Y+ G H+ FT+ I G SK Sbjct: 243 ASDKTVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSK 301 Query: 209 RAAEQVAAAEVLKRE 223 + A+++AA + R Sbjct: 302 KIAKRLAAHRMWMRL 316 >gi|89114114|gb|ABD61648.1| R3D1 [Drosophila simulans] Length = 407 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213 + LQE ++ G+TP Y++ G H+P F V A G SK+ A+ Sbjct: 103 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 161 Query: 214 VAAAEVLKRE 223 AA ++ + Sbjct: 162 AAARALIDKL 171 >gi|317419872|emb|CBN81908.1| Double-stranded RNA-binding protein Staufen homolog 2 [Dicentrarchus labrax] Length = 618 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 18/167 (10%) Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 E++++ N V+ E + + RV+ + + AAL + Sbjct: 214 EIALKRNLSVNFEVLKESGPPHMKSFLTRVTVGEFSAEGEGNSKKLSKKR----AALSIL 269 Query: 130 GGIEVAGTFV------DKYWKQR---ALKSGKF---RRDAKTELQEWAHAKFGVTPEYKV 177 ++ F+ ++K+R LK+G + + L + AK PEY + Sbjct: 270 QDLKKL-PFIPAVEKPKTHYKKRTKTILKTGPDYGQGMNPISRLAQIQQAKKEKEPEYLL 328 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G F + V+++ A G +K+ A++ AA +L + G Sbjct: 329 LSERGMPRRREFIMQVKVNNEV-ATGTGPNKKVAKRNAAEAMLLQLG 374 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P+YK+ GP H FTV + + + S + A+ AA+ L Sbjct: 20 NRIQPQYKLLNERGPAHAKIFTVQLTLGEQVW-EAEGTSIKKAQHSTAAKAL 70 >gi|195641916|gb|ACG40426.1| double-stranded RNA binding motif family protein [Zea mays] gi|195644492|gb|ACG41714.1| double-stranded RNA binding motif family protein [Zea mays] Length = 352 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 8/73 (10%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAE 212 K +LQE A P Y T R GPDH PRF V +G S R AE Sbjct: 2 YKNQLQELAQRSCFSLPSYVCT-REGPDHAPRFRAAVTFNGETF---EGPSGCTTLRQAE 57 Query: 213 QVAAAEVLKREGI 225 AA L R + Sbjct: 58 HAAAEVALARLSL 70 Score = 68.2 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y RSGP H P F+ VE++GL+ A +K+ AE+ AA Sbjct: 88 YKNLLQETAHRAGLKLPAYTTV-RSGPGHSPVFSSTVELAGLSFAGDPARTKKQAEKNAA 146 Query: 217 AEV---LKRE 223 LK+ Sbjct: 147 MAAWSSLKQM 156 >gi|226507212|ref|NP_001141877.1| hypothetical protein LOC100274020 [Zea mays] gi|194706274|gb|ACF87221.1| unknown [Zea mays] Length = 392 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 8/73 (10%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAE 212 K +LQE A P Y T R GPDH PRF V +G S R AE Sbjct: 2 YKNQLQELAQRSCFSLPSYVCT-REGPDHAPRFRAAVTFNGETF---EGPSGCTTLRQAE 57 Query: 213 QVAAAEVLKREGI 225 AA L R + Sbjct: 58 HAAAEVALARLSL 70 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 4/69 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y RSGP H P F+ VE++GL+ A +K+ AE+ AA Sbjct: 88 YKNLLQETAHRAGLKLPAYTTV-RSGPGHSPVFSSTVELAGLSFAGDPARTKKQAEKNAA 146 Query: 217 AEV---LKR 222 LK+ Sbjct: 147 MAAWSSLKQ 155 >gi|195398117|ref|XP_002057671.1| GJ17975 [Drosophila virilis] gi|194141325|gb|EDW57744.1| GJ17975 [Drosophila virilis] Length = 481 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 5/73 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213 + LQE ++ G+TP Y++ G H+P F V A G SK+ A+ Sbjct: 151 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 209 Query: 214 VAAAEVLKRE-GI 225 AA ++ + G+ Sbjct: 210 AAARALIDKLIGV 222 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 K + LQE + P Y+ G H+ FT+ I G SK+ Sbjct: 261 DKIVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACTILNFRE-VGKGKSKKI 319 Query: 211 AEQVAAAEVLKRE 223 A+++AA ++ R Sbjct: 320 AKRLAAHKMWTRL 332 >gi|296863410|pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular Implications Processing gi|296863411|pdb|3ADI|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular Implications Processing gi|296863412|pdb|3ADI|B Chain B, Structure Of Arabidopsis Hyl1 And Its Molecular Implications Processing gi|296863413|pdb|3ADI|C Chain C, Structure Of Arabidopsis Hyl1 And Its Molecular Implications Processing Length = 73 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215 K+ LQE+A TP Y++ GP H F V + G+ +++AAEQ A Sbjct: 5 FKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 63 Query: 216 AAEVLKRE 223 A L+ Sbjct: 64 AEVALREL 71 >gi|226498844|ref|NP_001146621.1| hypothetical protein LOC100280218 [Zea mays] gi|219888055|gb|ACL54402.1| unknown [Zea mays] gi|224029829|gb|ACN33990.1| unknown [Zea mays] Length = 289 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y RSGP H P F VE++G A +K+ A++ AA Sbjct: 88 YKNLLQETAHRAGLKLPIYTTI-RSGPGHTPVFACTVELAGKAFTGNPGKTKKQAQKNAA 146 Query: 217 AEV---LKRE 223 LK+ Sbjct: 147 MAAWSELKKL 156 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215 K +LQE A P Y R GPDH PRF V +G + CS R AE A Sbjct: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAA 60 Query: 216 AAEVLKRE 223 A L Sbjct: 61 AEVALNEL 68 >gi|195434256|ref|XP_002065119.1| GK14845 [Drosophila willistoni] gi|194161204|gb|EDW76105.1| GK14845 [Drosophila willistoni] Length = 512 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213 + LQE ++ G+TP Y++ G H+P F V A G SK+ A+ Sbjct: 178 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 236 Query: 214 VAAAEVLKRE 223 AA ++ + Sbjct: 237 AAARALIDKL 246 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 K + LQE + P Y+ G H+ FT+ I G SK+ Sbjct: 292 DKIVGNPIGWLQEMCMQRRWPPPSYETETELGLPHERLFTIACTILNYRE-VGKGKSKKI 350 Query: 211 AEQVAAAEVLKRE 223 A+++AA ++ R Sbjct: 351 AKRLAAHKMWTRL 363 >gi|89114100|gb|ABD61641.1| R3D1 [Drosophila simulans] gi|89114102|gb|ABD61642.1| R3D1 [Drosophila simulans] gi|89114104|gb|ABD61643.1| R3D1 [Drosophila simulans] gi|89114106|gb|ABD61644.1| R3D1 [Drosophila simulans] gi|89114108|gb|ABD61645.1| R3D1 [Drosophila simulans] gi|89114110|gb|ABD61646.1| R3D1 [Drosophila simulans] gi|89114112|gb|ABD61647.1| R3D1 [Drosophila simulans] Length = 407 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213 + LQE ++ G+TP Y++ G H+P F V A G SK+ A+ Sbjct: 103 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 161 Query: 214 VAAAEVLKRE 223 AA ++ + Sbjct: 162 AAARALIDKL 171 >gi|332027530|gb|EGI67607.1| RISC-loading complex subunit tarbp2 [Acromyrmex echinatior] Length = 343 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 ELQE PEY + GP H FT+ ++S G+ +K+ A+ AA + Sbjct: 113 ELQELCAENNLHEPEYFLIQDVGPPHAKIFTIRCKVSNFEE-DGIATTKKQAKHDAAKRM 171 Query: 220 LKR 222 + + Sbjct: 172 VDK 174 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE AK G+TP+YK+ G H FT V L+ A G K+ A+ AA Sbjct: 5 PVSILQEMM-AKQGMTPDYKLIHDGGGRHVNTFTYRVTCDSLS-ATGTGRCKKDAKHEAA 62 Query: 217 AEVL 220 +L Sbjct: 63 KAML 66 >gi|195472607|ref|XP_002088591.1| GE18652 [Drosophila yakuba] gi|194174692|gb|EDW88303.1| GE18652 [Drosophila yakuba] Length = 465 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213 + LQE ++ G+TP Y++ G H+P F V A G SK+ A+ Sbjct: 136 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 194 Query: 214 VAAAEVLKRE 223 AA ++ + Sbjct: 195 AAARALIDKL 204 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 1/73 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 K + LQE + P Y+ G H+ FT+ I G SK+ Sbjct: 245 DKIVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKI 303 Query: 211 AEQVAAAEVLKRE 223 A+++AA + R Sbjct: 304 AKRLAAHRMWMRL 316 >gi|89114096|gb|ABD61639.1| R3D1 [Drosophila melanogaster] Length = 407 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213 + LQE ++ G+TP Y++ G H+P F V A G SK+ A+ Sbjct: 103 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 161 Query: 214 VAAAEVLKRE 223 AA ++ + Sbjct: 162 AAARALIDKL 171 >gi|19921250|ref|NP_609646.1| loquacious, isoform B [Drosophila melanogaster] gi|17945270|gb|AAL48692.1| RE14437p [Drosophila melanogaster] gi|22946404|gb|AAF53295.2| loquacious, isoform B [Drosophila melanogaster] gi|71733132|gb|AAZ40191.1| R3D1-L [Drosophila melanogaster] gi|220947980|gb|ACL86533.1| loqs-PB [synthetic construct] gi|220957210|gb|ACL91148.1| loqs-PB [synthetic construct] Length = 465 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213 + LQE ++ G+TP Y++ G H+P F V A G SK+ A+ Sbjct: 136 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 194 Query: 214 VAAAEVLKRE 223 AA ++ + Sbjct: 195 AAARALIDKL 204 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 S K + LQE + P Y+ G H+ FT+ I G SK Sbjct: 243 ASDKTVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSK 301 Query: 209 RAAEQVAAAEVLKRE 223 + A+++AA + R Sbjct: 302 KIAKRLAAHRMWMRL 316 >gi|148235090|ref|NP_001085239.1| staufen, RNA binding protein, homolog 1 [Xenopus laevis] gi|56698874|gb|AAW23135.1| Staufen 1 [Xenopus laevis] Length = 718 Score = 68.9 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK G PEY + G F + V++ A A+G +K+ A++ Sbjct: 403 MNPISRLAQIQQAKKGKEPEYILITERGLPRRREFVMQVKVGNHA-AEGSGTNKKVAKRN 461 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 462 AAENMLEILG 471 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K ++ ++VT +GP H F V + G +G SK+ +++ AA VL+ Sbjct: 313 KRNMSVNFEVTKETGPPHMKSFLTKVIV-GEFLGEGEGKSKKISKKNAAIAVLEEL 367 >gi|33469621|gb|AAQ19853.1| staufen [Xenopus laevis] Length = 712 Score = 68.9 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK G PEY + G F + V++ A A+G +K+ A++ Sbjct: 397 MNPISRLAQIQQAKKGKEPEYILITERGLPRRREFVMQVKVGNHA-AEGSGTNKKVAKRN 455 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 456 AAENMLEILG 465 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K ++ ++VT +GP H F V + G +G SK+ +++ AA VL+ Sbjct: 307 KRNMSVNFEVTKETGPPHMKSFLTKVIV-GEFLGEGEGKSKKISKKNAAIAVLEEL 361 >gi|89114084|gb|ABD61633.1| R3D1 [Drosophila melanogaster] gi|89114086|gb|ABD61634.1| R3D1 [Drosophila melanogaster] gi|89114088|gb|ABD61635.1| R3D1 [Drosophila melanogaster] gi|89114090|gb|ABD61636.1| R3D1 [Drosophila melanogaster] gi|89114092|gb|ABD61637.1| R3D1 [Drosophila melanogaster] gi|89114094|gb|ABD61638.1| R3D1 [Drosophila melanogaster] gi|89114098|gb|ABD61640.1| R3D1 [Drosophila melanogaster] Length = 407 Score = 68.9 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213 + LQE ++ G+TP Y++ G H+P F V A G SK+ A+ Sbjct: 103 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 161 Query: 214 VAAAEVLKRE 223 AA ++ + Sbjct: 162 AAARALIDKL 171 >gi|49256219|gb|AAH74253.1| Stau1 protein [Xenopus laevis] gi|83405197|gb|AAI10922.1| Stau1 protein [Xenopus laevis] Length = 708 Score = 68.9 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK G PEY + G F + V++ A A+G +K+ A++ Sbjct: 393 MNPISRLAQIQQAKKGKEPEYILITERGLPRRREFVMQVKVGNHA-AEGSGTNKKVAKRN 451 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 452 AAENMLEILG 461 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K ++ ++VT +GP H F V + G +G SK+ +++ AA VL+ Sbjct: 303 KRNMSVNFEVTKETGPPHMKSFLTKVIV-GEFLGEGEGKSKKISKKNAAIAVLEEL 357 >gi|164508744|emb|CAM07147.1| double stranded RNA activated protein kinase 1 [Tetraodon nigroviridis] Length = 667 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E A + Y+ GPDH F +V I+ A +G+ +K+ A+Q Sbjct: 2 KNYISLLNEQAQKEGWSL-RYEDVGCDGPDHFRTFKIVTIINDRAFPEGVGKNKKDAKQK 60 Query: 215 AAAEVLKREGIWT 227 AA WT Sbjct: 61 AAENA------WT 67 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 1/81 (1%) Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + K ++ + R+ + + E K + + R GP H P+F + I G Sbjct: 210 ITDMMKSVSVTTADRERNYISLINEHCQKKGFSH-SFVMVDRQGPSHGPQFYYQLSIDGH 268 Query: 199 APAQGMDCSKRAAEQVAAAEV 219 G + + A Q AA Sbjct: 269 KYPVGEGKTAKEARQNAAQLA 289 >gi|158261305|dbj|BAF82830.1| unnamed protein product [Homo sapiens] Length = 479 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAGAMLLQLG 342 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239 Query: 223 E 223 Sbjct: 240 L 240 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 >gi|156387818|ref|XP_001634399.1| predicted protein [Nematostella vectensis] gi|156221482|gb|EDO42336.1| predicted protein [Nematostella vectensis] Length = 69 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 LQE K PEYK GP H +F +VV + G A G SK+ A++ AA + Sbjct: 10 RLQEVTVKKGWQYPEYKDVKAKGPPHMRQFEMVVTV-GTLTATGKGRSKKDAKRSAANAM 68 Query: 220 L 220 L Sbjct: 69 L 69 >gi|16758178|ref|NP_445888.1| staufen RNA binding protein homolog 1 isoform 1 [Rattus norvegicus] gi|9754866|gb|AAF98119.1|AF227200_1 staufen isoform Stau+I6 [Rattus norvegicus] Length = 495 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 81/200 (40%), Gaps = 23/200 (11%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELD---LAS 95 ERLE + G N + ++ E++++ N V+ E+ +QVARE + + Sbjct: 79 ERLE-----VNGRESEEENLNKSEISQVFEIALKRNLPVNFESFPLTQVARESGPPHMKN 133 Query: 96 FI-RVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 F+ RVS + + + +++ L + V K+++ + K Sbjct: 134 FVTRVSVGEFVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVER-VKPRIKKKSQPTCK 192 Query: 153 FR--------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ G A+G Sbjct: 193 LQTAPDYGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGA 251 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 252 GTNKKVAKRNAAENMLEILG 271 >gi|224046380|ref|XP_002199282.1| PREDICTED: staufen homolog 2 [Taeniopygia guttata] Length = 680 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G G +K+ A++ Sbjct: 378 MNPISRLAQIQQAKKEKEPEYVLLSERGMPRRREFVMQVKV-GNDTTTGTGPNKKIAKRN 436 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 437 AAEAMLLQLG 446 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + P+YK+ GP H FTV + + + S + A+ AA++ L Sbjct: 92 NRIQPQYKLLNERGPAHAKMFTVQLTLGEQTW-EAEGSSIKKAQHAAASKALN 143 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K + ++V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 290 KRNIPVTFEVIKESGPPHMKSFVTRVTV-GEFTAEGEGNSKKLSKKRAAMAVLQEL 344 Score = 37.0 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 216 KVFYVQLTVGNSEFF-GEGKTRQAARHNAAMKALQAL 251 >gi|219968357|emb|CAO98758.1| double-stranded RNA activated protein kinase 1 [Tetraodon nigroviridis] Length = 667 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E A + Y+ GPDH F +V I+ A +G+ +K+ A+Q Sbjct: 2 KNYISLLNEQAQKEGWSL-RYEDVGCDGPDHFRTFKIVTIINDRAFPEGVGKNKKDAKQK 60 Query: 215 AAAEVLKREGIWT 227 AA WT Sbjct: 61 AAENA------WT 67 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 1/81 (1%) Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + K ++ + R+ + + E K + + R GP H P+F + I G Sbjct: 210 ITDMMKSVSVTTADRERNYISLINEHCQKKGFSH-SFVMVDRQGPSHGPQFYYQLSIDGH 268 Query: 199 APAQGMDCSKRAAEQVAAAEV 219 G + + A Q AA Sbjct: 269 KYPVGEGKTAKEARQNAAQLA 289 >gi|41055520|ref|NP_957219.1| double-stranded RNA-binding protein Staufen homolog 2 [Danio rerio] gi|28277474|gb|AAH45292.1| Staufen, RNA binding protein, homolog 2 (Drosophila) [Danio rerio] Length = 653 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 12/164 (7%) Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 E++++ N V+ E + + RV+ + + +L ++ + Sbjct: 261 EIALKRNLPVNFEVLKESGPPHMKSFLTRVTVGEFSAEGEGNSKKLSKKRAAL--SILQE 318 Query: 130 GGIEVAGTFVDK---YWKQR---ALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFR 180 V+K ++K+R LK+G + + L + AK PEY + Sbjct: 319 LKKLPVLPVVEKPKVHYKKRPKTILKTGPEYGQGMNPISRLAQIQQAKKEKEPEYMLLSE 378 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G F + V++ G G +K+ A++ AA +L + G Sbjct: 379 RGMPRRREFIMQVKV-GTEVTTGTGPNKKVAKRNAAEAMLLQLG 421 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P+YK+ GP H FTV + + S + A+ A + L Sbjct: 67 NRIQPQYKLLNEKGPAHAKIFTVQLCLGNQVWES-EGSSIKKAQHSTATKAL 117 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 191 KVFYVQLTVGNNE-FIGEGRTRQAARHNAAMKALQAL 226 >gi|241949343|ref|XP_002417394.1| 60S ribosomal protein L3, mitochondrial precursor, putative [Candida dubliniensis CD36] gi|223640732|emb|CAX45045.1| 60S ribosomal protein L3, mitochondrial precursor, putative [Candida dubliniensis CD36] Length = 407 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 67/219 (30%), Gaps = 50/219 (22%) Query: 46 LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA----------- 94 LG +L ++ L H+ +SL+ T S++ + + Sbjct: 147 LGKSLLSYYVTEYLLIHYPRLPMKIHQAAIDSLMGNLTLSEIGKSWGIEIDEVSKLDRFL 206 Query: 95 ----SFIRVSS-----------DLRKDVCSFMTSI------------------QADVVES 121 F++ + ++ A V++ Sbjct: 207 GQESEFMKFGRLRYLYDQDKSDKFYNNNGNYKNVTGIEEIIDEEGKLSQQDLAYASAVKA 266 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHA-KFGVTPEYKVT 178 +I LY G +A F++ + R + + + +EL +F ++ Sbjct: 267 IIGGLYTHCGESIAKEFINDHILSRKIPLDQMFEFKRPISELIRLCDKLEFKQPVSIRLI 326 Query: 179 FRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 +G H P+F V + +G+ S + A+ A Sbjct: 327 AETGRLSAH-PQFLAGVFVGNDKIGEGIGSSLKEAQIRA 364 >gi|255543655|ref|XP_002512890.1| double-stranded RNA binding protein, putative [Ricinus communis] gi|223547901|gb|EEF49393.1| double-stranded RNA binding protein, putative [Ricinus communis] Length = 477 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE AH P Y RSGP H P FT VE++G+ G +K+ AE+ A Sbjct: 91 YKNLLQETAHRAGLNLPVYTTI-RSGPGHVPTFTCTVELAGMN-FTGEPAKTKKQAEKNA 148 Query: 216 AAE---VLKRE 223 A LKR Sbjct: 149 AIAAWSALKRM 159 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212 K +LQE A P Y R GPDH PRF V +G S R AE Sbjct: 5 FKNQLQELAQRSCFNLPSYACV-REGPDHAPRFKASVNFNGEIFES---PSYCTTLRQAE 60 Query: 213 QVAAAEVLK 221 AA L Sbjct: 61 HAAAEVALN 69 >gi|307215189|gb|EFN89961.1| Interferon-inducible double stranded RNA-dependent protein kinase activator A [Harpegnathos saltator] Length = 381 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 + + K + LQE ++ P+Y + G H+ +FT+V I Sbjct: 153 QNLQELQTYGEEKVMNNPIGALQEMCMSRHWPPPKYTMEGEEGLPHERQFTIVCSIL-KY 211 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G SK+ A++ AA ++ + Sbjct: 212 REVGQGKSKKVAKRHAAHKMWQAL 235 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 5/55 (9%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG----LAPAQGMDCS 207 + LQE ++ G P+Y++ G H+P F V ++ + A G S Sbjct: 64 PVSVLQELL-SRRGTIPKYELVQIEGAIHEPTFRYRVTVADVVDPIVSAMGTGRS 117 >gi|255713568|ref|XP_002553066.1| KLTH0D08140p [Lachancea thermotolerans] gi|238934446|emb|CAR22628.1| KLTH0D08140p [Lachancea thermotolerans] Length = 374 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 71/232 (30%), Gaps = 36/232 (15%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A T SS+ S L G +L ++ + L+ ++ +S + Sbjct: 123 AFT-SSVPTSNFYDNHGLNIFGKNLLTYHVTRQTMAKYPRLPTVVLNAAVDAYISQSVLA 181 Query: 86 QVARELD--------LASFIR-------VSS--------------DLRKDVCSFMTSIQA 116 V R L ++R + +L + A Sbjct: 182 SVGRSWGIELENSSVLDRYLREEPIQVSLGKLRFFNNALKREDGVELITSHNFSEDAAYA 241 Query: 117 DVVESLIAALY---LDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGV 171 V S+I AL+ + A F+D + R L + + EL + Sbjct: 242 LAVRSVIGALWAYTHETDPTFAFRFIDDHILSRKLDVTRIFQFEQPARELAVLCRRENLS 301 Query: 172 TPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P K+ SG P F V V +G S + A+ AA + L + Sbjct: 302 PPVSKLLAESGRLSKAPVFIVGVFSGAEKLGEGFGSSLKEAKARAATDALMK 353 >gi|194860648|ref|XP_001969628.1| GG23848 [Drosophila erecta] gi|190661495|gb|EDV58687.1| GG23848 [Drosophila erecta] Length = 464 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213 + LQE ++ G+TP Y++ G H+P F V A G SK+ A+ Sbjct: 135 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 193 Query: 214 VAAAEVLKRE 223 AA ++ + Sbjct: 194 AAARALIDKL 203 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 1/73 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 K + LQE + P Y+ G H+ FT+ I G SK+ Sbjct: 244 DKIVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKI 302 Query: 211 AEQVAAAEVLKRE 223 A+++AA + R Sbjct: 303 AKRLAAHRMWMRL 315 >gi|255583419|ref|XP_002532469.1| double-stranded RNA binding protein, putative [Ricinus communis] gi|223527827|gb|EEF29925.1| double-stranded RNA binding protein, putative [Ricinus communis] Length = 289 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAEQVA 215 K LQE+ + P Y+ G HDP+F V + G S ++ AEQ Sbjct: 14 YKNRLQEYTQRQSLQLPIYQTVNE-GYPHDPKFRSTVLVDGEEYTSHNTFSHRKEAEQDV 72 Query: 216 AAEVL 220 A L Sbjct: 73 AKLAL 77 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K+ L E+A P Y + G P F +G+ + +K+ AEQ+AA Sbjct: 102 KSILNEYAVKMQLEMPTYNTVKQGGL--FPIFVSSSVFNGVTYNGDIGRTKKEAEQLAAR 159 Query: 218 EV 219 Sbjct: 160 AA 161 >gi|324502096|gb|ADY40922.1| Double-stranded RNA-binding protein Staufen [Ascaris suum] Length = 906 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + + + L + A+ P++++ G F V V + +G +K+ A+ Sbjct: 470 HQINPVSRLMQVMQARKENEPKFQLVAEHGQSRYKEFVVEVTCADGLRCEGTGPNKKLAK 529 Query: 213 QVAAAEVLKREG 224 + AA +L R G Sbjct: 530 RAAAEAMLARIG 541 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 9/84 (10%) Query: 148 LKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLA 199 L+S ++ K +++ E + + E+++ GP HD + + ++ + Sbjct: 344 LQSATVNKNGKPKSAISQIHE-CALQMRMNVEFEILREEGPAHDRHYLLRCKMISPDEVI 402 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 A G SK+ A+Q A A +L + Sbjct: 403 IADGEGGSKKIAKQNACALMLTKL 426 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 17/34 (50%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 EYK+ SGP H RFTV + ++ G S Sbjct: 81 EYKLMDESGPAHKKRFTVSLILTPDQVFDGCGAS 114 >gi|301754405|ref|XP_002913051.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1-like [Ailuropoda melanoleuca] Length = 684 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 18/174 (10%) Query: 67 KEGELSVRFNSLVSAET--CSQVARELD---LASFI-RVSSDLRKDVCSFMTSIQADVVE 120 + E++++ N V+ E+ QVARE + SF+ RVS + + Sbjct: 289 QVFEIALKRNLPVNFESFPLKQVARESGPPHMKSFVTRVSVGEFVGEGEGKSKKISKKN- 347 Query: 121 SLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFR--------RDAKTELQEWAHAKFG 170 + IA L + TF V K++ + + + + L + AK Sbjct: 348 AAIAVLEELKKLPPLPTFERVKPRIKKKTKSIVRLQGSTDCSQGMNPISRLAQIQQAKKE 407 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PEY + G F + V++ G A+G +K+ A++ AA +L+ G Sbjct: 408 KEPEYLLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNAAENMLEILG 460 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + PEYK+ GP H FTV + + + S + A+ AAA+ L+ Sbjct: 92 NKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIKKAQHTAAAKALE 143 >gi|195115174|ref|XP_002002139.1| GI17218 [Drosophila mojavensis] gi|193912714|gb|EDW11581.1| GI17218 [Drosophila mojavensis] Length = 454 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 5/73 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213 + LQE ++ G+TP Y++ G H+P F V A G SK+ A+ Sbjct: 124 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 182 Query: 214 VAAAEVLKRE-GI 225 AA ++ + G+ Sbjct: 183 AAARALIDKLIGV 195 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 K + LQE + P Y+ G H+ FT+ I G SK+ Sbjct: 234 DKIVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACTILNYHE-VGKGKSKKI 292 Query: 211 AEQVAAAEVLKRE 223 A+++AA ++ R Sbjct: 293 AKRLAAHKMWTRL 305 >gi|226494720|ref|NP_001142144.1| hypothetical protein LOC100274309 [Zea mays] gi|194707342|gb|ACF87755.1| unknown [Zea mays] Length = 515 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE A P Y T RSG H P FT VE++G+ +K+ AE+ AA Sbjct: 88 YKNLLQEVAQRVGAPLPLY-TTERSGVGHLPVFTCTVELAGITFTGDHAKNKKQAEKNAA 146 Query: 217 AE---VLKRE 223 + LK+ Sbjct: 147 SAAWSALKQL 156 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 K +LQE A P Y R GPDH PRF V +G Sbjct: 2 YKNQLQELAQRSCFNLPSYTCL-REGPDHAPRFKAAVNFNGE 42 >gi|195578966|ref|XP_002079333.1| loquacious [Drosophila simulans] gi|194191342|gb|EDX04918.1| loquacious [Drosophila simulans] Length = 464 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213 + LQE ++ G+TP Y++ G H+P F V A G SK+ A+ Sbjct: 135 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 193 Query: 214 VAAAEVLKRE 223 AA ++ + Sbjct: 194 AAARALIDKL 203 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE + P Y+ G H+ FT+ I G SK+ A+++AA + Sbjct: 254 LQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLAAHRMW 312 Query: 221 KRE 223 R Sbjct: 313 VRL 315 >gi|224104957|ref|XP_002313634.1| predicted protein [Populus trichocarpa] gi|222850042|gb|EEE87589.1| predicted protein [Populus trichocarpa] Length = 484 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVA 215 K LQE A + P YK+ SG H P F VEI G + SK+ AE + Sbjct: 201 YKNALQELAQREDLSMPVYKIIK-SGALHMPTFFSYVEIEGEKFYGKA-GKSKKEAELKS 258 Query: 216 AAEV 219 A Sbjct: 259 ARAA 262 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAA 216 KT+LQE H + P+Y GPDH P F V ++G++ + S + A AA Sbjct: 3 KTKLQEVCHKRQWGLPKYSAMK-DGPDHTPCFKASVYVNGISFHSSASCKSSKDAHNDAA 61 Query: 217 AEV 219 Sbjct: 62 KMA 64 >gi|307172924|gb|EFN64091.1| Interferon-inducible double stranded RNA-dependent protein kinase activator A [Camponotus floridanus] Length = 376 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 + ++ K + LQE ++ P+Y + G H+ +FT+V I Sbjct: 148 QNLQELQSYGEEKVVNNPIGALQEMCMSRHWPPPKYTMEGEEGLPHERQFTIVCSIL-KY 206 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G SK+ A++ AA ++ + Sbjct: 207 REVGQGKSKKVAKRHAAHKMWQAL 230 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE ++ G P+Y++ G H+P F V ++ + A G S Sbjct: 64 PVSVLQELL-SRRGTIPKYELVQIEGAIHEPTFRYRVTVADVV-AMGTGRS 112 >gi|332029664|gb|EGI69553.1| Interferon-inducible double stranded RNA-dependent protein kinase activator A [Acromyrmex echinatior] Length = 377 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 + + K + LQE ++ P+Y + G H+ +FT+V I Sbjct: 149 QNLQELQTYGEEKIVNNPIGALQEMCMSRHWPPPKYSMEGEEGLPHERQFTIVCSIL-KY 207 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G SK+ A++ AA ++ + Sbjct: 208 REVGQGKSKKVAKRHAAHKMWQAL 231 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 + LQE ++ G P+Y++ G H+P F V ++ + A G Sbjct: 65 PVSVLQELL-SRRGTIPKYELVQIEGAIHEPTFRYRVTVTDVV-AMGTGR 112 >gi|321468486|gb|EFX79471.1| hypothetical protein DAPPUDRAFT_244860 [Daphnia pulex] Length = 118 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L EW + PEY+V +SGP H + + ++S +G+ SK+AA+ AA ++L Sbjct: 52 LSEWRLTRHSTLPEYRVVRKSGPSHSKTYFMTCKLSERV-TEGVGKSKKAAKNDAAQKML 110 Query: 221 K 221 + Sbjct: 111 Q 111 >gi|316979346|gb|EFV62151.1| ribosome biogenesis protein BOP1 [Trichinella spiralis] Length = 983 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 9/94 (9%) Query: 135 AGTFVDKYWKQRALKSGKFRRD--------AKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 A F+ + + + G D LQE+ K + P + G HD Sbjct: 749 AKQFLLRLAAYKDDEQGGVNGDGSGKSNTVYVNVLQEFCIQKHYLKPVFTEEGMCGAQHD 808 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F V VE+ G SK+ A+Q AA +L Sbjct: 809 QTFFVSVELGEYKK-TGSGRSKKLAKQNAAHLML 841 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + L E K G+TP Y++ G D F + I + + G SK+ A+Q AA Sbjct: 668 SLLHEIC-GKKGLTPMYELLTSQGQGVDSLFVYRLCIDSVV-STGRGKSKKLAKQNAA 723 >gi|317156821|ref|XP_001826035.2| hypothetical protein AOR_1_660054 [Aspergillus oryzae RIB40] Length = 939 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 1/88 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE +GY F+++SL +++TH S Y SY RL FLG I+ L++ L Sbjct: 701 LEALLGYTFSDKSLAIESMTHPSCVGLYGTASYRRLSFLGAGIIELVVVRYLHRQKSFTS 760 Query: 68 EGELSVRFNSLVSAETCSQVARELDLAS 95 L +++ + + + Sbjct: 761 SKRLQSLKSAVTNNMFLAFLCLTFHWEK 788 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 19/137 (13%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F LL AL S ++ + + F+GD I+ LI+ LF H EG L+ Sbjct: 526 RFERMDLLCIAL--SPTDDMHRHEFRSMAFIGDAIVKFLITRQLFLHHTLWHEGLLTSVK 583 Query: 76 NSLVSAETCSQVARELDLASFIR-------------VSSDLRKDVCSFMTSI----QADV 118 +S+VS + S++ VS+ L K + + AD+ Sbjct: 584 DSIVSDTGLAAALCHSGFGSYLITTRFNGKRWRPSFVSTTLSKSGPTRRRYVGAATVADM 643 Query: 119 VESLIAALYLDGGIEVA 135 V++L A +LD G++ A Sbjct: 644 VKALAGAAFLDNGLDQA 660 >gi|213417911|ref|NP_001132989.1| interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 2 [Homo sapiens] gi|21739361|emb|CAD38725.1| hypothetical protein [Homo sapiens] gi|119631440|gb|EAX11035.1| protein kinase, interferon-inducible double stranded RNA dependent activator, isoform CRA_b [Homo sapiens] Length = 302 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 108 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 166 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 167 KQAKRNAAEKFLAK 180 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ H P FT V + + G SK+ A+ Sbjct: 22 KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 79 Query: 215 AAAEVLK 221 AA + Sbjct: 80 AAEAAIN 86 >gi|212291457|gb|ACJ23858.1| double-stranded RNA-dependent protein kinase [Oplegnathus fasciatus] Length = 704 Score = 68.2 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + L E+A +Y GPDH FT V ++G A G+ +KR A+ A Sbjct: 5 NYIARLNEFAQRTRSAL-KYNDLGCVGPDHIKTFTQRVVLNGKAYPDGVGKNKREAKHNA 63 Query: 216 AAEVLK 221 A LK Sbjct: 64 AKNALK 69 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + G ++ R GP H+PRF + I+ G S + A++ AA Sbjct: 227 YCQKTNGSH-KFIEERRCGPPHNPRFFYKLVINDKDYPVGEGKSAKEAKKNAAQLA 281 >gi|156540328|ref|XP_001599266.1| PREDICTED: similar to adenosine deaminase, partial [Nasonia vitripennis] Length = 429 Score = 68.2 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 11/87 (12%) Query: 141 KYWKQRALKSGKFRRD--AKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 K K A+ + K ++ K L E YKV ++GP H P FT+ V+I Sbjct: 150 KLLKTGAINAKKKHKNTQPKNAVCALNEL-----KAGATYKVVSQTGPTHAPIFTIAVQI 204 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G + +G +K+ A+ AA L+ Sbjct: 205 DGQSY-EGKGRTKKMAKHAAAELALRN 230 >gi|149247898|ref|XP_001528336.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|146448290|gb|EDK42678.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 389 Score = 68.2 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 62/219 (28%), Gaps = 41/219 (18%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA---- 94 + L +G ++ ++ L H+ + ++L+ E+ + R + Sbjct: 130 NNYGLNVIGKVLMSYYVTEYLLLHYPRLPMSIHNAATDALIGTESLLSIGRSWGIEVDEV 189 Query: 95 -----------SFIRVSSDLRKD--VCSFMTSIQADVVE--------------------S 121 F++ V E + Sbjct: 190 SKLDRFLGQESEFLKYGRLRYMSDNKKENRVKDLPGVTEVLSLNSNLTQEDKAYTSAVTA 249 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTP-EYKVT 178 ++ +Y G A F+ + R + + + TEL P ++ Sbjct: 250 IVGGIYTHCGEVAAKEFILDHILSRKVPLSEMFQFEQPITELIRLCDKLQFQEPLSIRLI 309 Query: 179 FRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +G P+F V + +G+ S + A+ AA Sbjct: 310 AETGRKSASPQFLAGVFVGNEKLGEGIGASLKEAQTRAA 348 >gi|238492895|ref|XP_002377684.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] gi|220696178|gb|EED52520.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] Length = 790 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 1/88 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE +GY F+++SL +++TH S Y SY RL FLG I+ L++ L Sbjct: 552 LEALLGYTFSDKSLAIESMTHPSCVGLYGTASYRRLSFLGAGIIELVVVRYLHRQKSFTS 611 Query: 68 EGELSVRFNSLVSAETCSQVARELDLAS 95 L +++ + + + Sbjct: 612 SKRLQSLKSAVTNNMFLAFLCLTFHWEK 639 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 19/137 (13%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F LL AL S ++ + + F+GD I+ LI+ LF H EG L+ Sbjct: 377 RFERMDLLCIAL--SPTDDMHRPEFRSMAFIGDAIVKFLITRQLFLHHTLWHEGLLTSVK 434 Query: 76 NSLVSAETCSQVARELDLASFIR-------------VSSDLRKDVCSFMTSI----QADV 118 +S+VS + S++ VS+ L K + + AD+ Sbjct: 435 DSIVSDTGLAAALCHSGFGSYLITTRFNGKRWRPFFVSTTLSKSGPTRRRYVGAATVADM 494 Query: 119 VESLIAALYLDGGIEVA 135 V++L A +LD G++ A Sbjct: 495 VKALAGAAFLDNGLDQA 511 >gi|156340926|ref|XP_001620596.1| hypothetical protein NEMVEDRAFT_v1g222935 [Nematostella vectensis] gi|156205720|gb|EDO28496.1| predicted protein [Nematostella vectensis] Length = 171 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 KT L + ++ E+++ + GP HD F V V ++G +G SK+ A+ AA Sbjct: 56 FKTPLMQL--NEYKPGLEFRLVSQEGPPHDTTFVVAVTVNGQTY-EGKGSSKQRAKHDAA 112 Query: 217 AEVLK 221 + L+ Sbjct: 113 EKALQ 117 >gi|321468344|gb|EFX79329.1| hypothetical protein DAPPUDRAFT_244966 [Daphnia pulex] Length = 96 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L EW + PEY+V SGP H + + ++S +G SK+AA+ AA ++L Sbjct: 30 LSEWRFTRHSSLPEYRVVRTSGPSHSKTYFMTCKLSDRV-TEGEGKSKKAAKNDAAQKML 88 Query: 221 K 221 + Sbjct: 89 Q 89 >gi|27262833|emb|CAD59425.1| dsRNA-binding protein [Brassica oleracea var. botrytis] Length = 283 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS----GLAPAQGMDCSKRAAE 212 K+ LQE+A TP Y+ GP H P F V ++ P +++AAE Sbjct: 16 FKSRLQEYAQRYKLPTPLYETIKE-GPSHKPLFQSTVIVNYVRYDSLPGF---FNRKAAE 71 Query: 213 QVAAAEVLK 221 Q AA L+ Sbjct: 72 QSAAEVALQ 80 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 K LQE+A P Y+ P+FT VEI G+ +K+ AE Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAE 157 >gi|328769139|gb|EGF79183.1| hypothetical protein BATDEDRAFT_25727 [Batrachochytrium dendrobatidis JAM81] Length = 380 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 85/240 (35%), Gaps = 53/240 (22%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S + ++RLEFLGD +L L L+ G LS LV + + V+ + Sbjct: 52 SGTGKLGSIFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQ 111 Query: 91 LDLASFIRV--------------------------------------SSDLRKDVCSFMT 112 + L +IR S+ L + + Sbjct: 112 IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARLFWNKGNTAP 171 Query: 113 SIQADVVESLIAALYLDGGIEVAG-------TFVDKYWKQRALKSGKFRR---DAKTELQ 162 DV ES++ A+++D ++ T + +W + G + EL+ Sbjct: 172 KTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELR 231 Query: 163 EWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +++ F V +Y T+ G H T + + AQ + +R A++ AA +K Sbjct: 232 TLSYSLFKCVKIDY--TYEYGL-HGGT-TATITYHNMVLAQCLGTGQRDAKKAAACTAVK 287 >gi|194765827|ref|XP_001965027.1| GF23153 [Drosophila ananassae] gi|190617637|gb|EDV33161.1| GF23153 [Drosophila ananassae] Length = 472 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 5/73 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213 + LQE ++ G+TP Y++ G H+P F V A G SK+ A+ Sbjct: 140 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 198 Query: 214 VAAAEVLKRE-GI 225 AA ++ + G+ Sbjct: 199 AAARALIDKLIGV 211 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE + P Y+ G H+ FT+ I G SK+ A+++AA + Sbjct: 262 LQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLAAHRMW 320 Query: 221 KRE 223 R Sbjct: 321 VRL 323 >gi|321468345|gb|EFX79330.1| hypothetical protein DAPPUDRAFT_244967 [Daphnia pulex] Length = 96 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L EW + PEY+V +SGP H + + ++S +G SK+AA+ AA ++L Sbjct: 30 LSEWRFTRHSSLPEYRVVRKSGPSHSKTYFMTCKLSDRV-TEGEGKSKKAAKNDAAQKML 88 Query: 221 K 221 + Sbjct: 89 Q 89 >gi|296085908|emb|CBI31232.3| unnamed protein product [Vitis vinifera] Length = 494 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAA 216 KT LQE H K PEY T + GP H+P F V + GL+ + S + A+ AA Sbjct: 3 KTRLQELCHRKRWNPPEYS-TRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNAA 61 Query: 217 AEVLK 221 ++ Sbjct: 62 GLAIQ 66 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 5/76 (6%) Query: 148 LKSGKFRRD----AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 L F+ D K LQE A + P Y T +SG H P F VEI G Sbjct: 225 LSPAGFQEDDYGVYKNLLQEMARKEGYQLPVYS-TEKSGVSHMPTFLSTVEIEGETFVGQ 283 Query: 204 MDCSKRAAEQVAAAEV 219 +K+ AE AA Sbjct: 284 KAKTKKLAEMNAAKAA 299 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVA 215 KT+LQ +A + P Y GP H+ RF V I + + AE A Sbjct: 159 YKTQLQTYAQKRNLPLPMYSFESI-GPSHNCRFKSKVTIEEQTYESPDFFPTLKDAEHAA 217 Query: 216 AAEVL 220 A L Sbjct: 218 AKLAL 222 >gi|225439221|ref|XP_002270719.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 581 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAA 216 KT LQE H K PEY T + GP H+P F V + GL+ + S + A+ AA Sbjct: 3 KTRLQELCHRKRWNPPEYS-TRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNAA 61 Query: 217 AEVLK 221 ++ Sbjct: 62 GLAIQ 66 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 5/76 (6%) Query: 148 LKSGKFRRD----AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 L F+ D K LQE A + P Y T +SG H P F VEI G Sbjct: 298 LSPAGFQEDDYGVYKNLLQEMARKEGYQLPVYS-TEKSGVSHMPTFLSTVEIEGETFVGQ 356 Query: 204 MDCSKRAAEQVAAAEV 219 +K+ AE AA Sbjct: 357 KAKTKKLAEMNAAKAA 372 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVA 215 KT+LQ +A + P Y GP H+ RF V I + + AE A Sbjct: 232 YKTQLQTYAQKRNLPLPMYSFESI-GPSHNCRFKSKVTIEEQTYESPDFFPTLKDAEHAA 290 Query: 216 AAEVL 220 A L Sbjct: 291 AKLAL 295 >gi|296204404|ref|XP_002749315.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A-like [Callithrix jacchus] Length = 302 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 108 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 166 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 167 KQAKRNAAEKFLAK 180 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ H P FT V + + G SK+ A+ Sbjct: 22 KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 79 Query: 215 AAAEVLK 221 AA + Sbjct: 80 AAEAAIN 86 >gi|195351293|ref|XP_002042169.1| GM10477 [Drosophila sechellia] gi|194123993|gb|EDW46036.1| GM10477 [Drosophila sechellia] Length = 464 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213 + LQE ++ G+TP Y++ G H+P F V A G SK+ A+ Sbjct: 135 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 193 Query: 214 VAAAEVLKRE 223 AA ++ + Sbjct: 194 AAARALIDKL 203 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE + P Y+ G H+ FT+ I G SK+ A+++AA + Sbjct: 254 LQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLAAHRMW 312 Query: 221 KRE 223 R Sbjct: 313 VRL 315 >gi|149031451|gb|EDL86441.1| adenosine deaminase, RNA-specific, B2 [Rattus norvegicus] Length = 746 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y++ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 127 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 183 Query: 217 AEVLK 221 LK Sbjct: 184 EMALK 188 >gi|148700329|gb|EDL32276.1| adenosine deaminase, RNA-specific, B2, isoform CRA_a [Mus musculus] Length = 742 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y++ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 126 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 182 Query: 217 AEVLK 221 LK Sbjct: 183 EMALK 187 >gi|26337823|dbj|BAC32597.1| unnamed protein product [Mus musculus] Length = 701 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y++ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 126 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 182 Query: 217 AEVLK 221 LK Sbjct: 183 EMALK 187 >gi|37590574|gb|AAH59822.1| Adarb2 protein [Mus musculus] Length = 701 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y++ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 126 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 182 Query: 217 AEVLK 221 LK Sbjct: 183 EMALK 187 >gi|8699065|gb|AAF78580.1| RNA adenosine deaminase RED2 [Mus musculus] Length = 731 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y++ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 116 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 172 Query: 217 AEVLK 221 LK Sbjct: 173 EMALK 177 >gi|8571466|gb|AAF76894.1|AF270495_1 RNA dependent adenosine deaminase 3 [Mus musculus] Length = 745 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y++ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 126 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 182 Query: 217 AEVLK 221 LK Sbjct: 183 EMALK 187 >gi|74148073|dbj|BAE22359.1| unnamed protein product [Mus musculus] Length = 745 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y++ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 126 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 182 Query: 217 AEVLK 221 LK Sbjct: 183 EMALK 187 >gi|31542106|ref|NP_443209.2| double-stranded RNA-specific editase B2 [Mus musculus] gi|33112435|sp|Q9JI20|RED2_MOUSE RecName: Full=Double-stranded RNA-specific editase B2; AltName: Full=RNA-dependent adenosine deaminase 3; AltName: Full=RNA-editing deaminase 2; AltName: Full=RNA-editing enzyme 2; AltName: Full=dsRNA adenosine deaminase B2 gi|26329549|dbj|BAC28513.1| unnamed protein product [Mus musculus] gi|30851427|gb|AAH52426.1| Adenosine deaminase, RNA-specific, B2 [Mus musculus] gi|74224054|dbj|BAE23882.1| unnamed protein product [Mus musculus] gi|74226553|dbj|BAE23939.1| unnamed protein product [Mus musculus] gi|148700330|gb|EDL32277.1| adenosine deaminase, RNA-specific, B2, isoform CRA_b [Mus musculus] Length = 745 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y++ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 126 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 182 Query: 217 AEVLK 221 LK Sbjct: 183 EMALK 187 >gi|18959240|ref|NP_579836.1| double-stranded RNA-specific editase B2 [Rattus norvegicus] gi|33112433|sp|P97616|RED2_RAT RecName: Full=Double-stranded RNA-specific editase B2; AltName: Full=RNA-dependent adenosine deaminase 3; AltName: Full=RNA-editing deaminase 2; AltName: Full=RNA-editing enzyme 2; AltName: Full=dsRNA adenosine deaminase B2 gi|1814270|gb|AAB41862.1| double-stranded RNA specific adenosine deaminase [Rattus norvegicus] Length = 746 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y++ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 127 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 183 Query: 217 AEVLK 221 LK Sbjct: 184 EMALK 188 >gi|83774779|dbj|BAE64902.1| unnamed protein product [Aspergillus oryzae] Length = 1256 Score = 68.2 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 1/88 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE +GY F+++SL +++TH S Y SY RL FLG I+ L++ L Sbjct: 1018 LEALLGYTFSDKSLAIESMTHPSCVGLYGTASYRRLSFLGAGIIELVVVRYLHRQKSFTS 1077 Query: 68 EGELSVRFNSLVSAETCSQVARELDLAS 95 L +++ + + + Sbjct: 1078 SKRLQSLKSAVTNNMFLAFLCLTFHWEK 1105 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 21/138 (15%) Query: 16 AFANRSLLEKALTHSSISHSYQESYER-LEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 F LL AL S + R + F+GD I+ LI+ LF H EG L+ Sbjct: 843 RFERMDLLCIAL---SPTDDMHRHEFRSMAFIGDAIVKFLITRQLFLHHTLWHEGLLTSV 899 Query: 75 FNSLVSAETCSQVARELDLASFIR-------------VSSDLRKDVCSFMTSI----QAD 117 +S+VS + S++ VS+ L K + + AD Sbjct: 900 KDSIVSDTGLAAALCHSGFGSYLITTRFNGKRWRPSFVSTTLSKSGPTRRRYVGAATVAD 959 Query: 118 VVESLIAALYLDGGIEVA 135 +V++L A +LD G++ A Sbjct: 960 MVKALAGAAFLDNGLDQA 977 >gi|109097111|ref|XP_001110800.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A-like [Macaca mulatta] Length = 251 Score = 68.2 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T V + G SK Sbjct: 76 KQPKNQLNPVGSLQELAFHHGWRRPEYTLSQEGGPAHKREYTTVCRLEAF-METGKGASK 134 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 135 KQAKRNAAEKFLAK 148 Score = 37.0 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 4/59 (6%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 K P Y+ H P FT V + + +G K+ + AA + IW Sbjct: 2 KTKNIPVYECERSDVQIHVPTFTFRVTVGDIT-CRGEGTGKKLVKHRAAEAAI---NIW 56 >gi|73919457|sp|Q7ZW47|STAU2_DANRE RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2 Length = 606 Score = 68.2 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 12/164 (7%) Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 E++++ N V+ E + + RV+ + + +L ++ + Sbjct: 214 EIALKRNLPVNFEVLKESGPPHMKSFLTRVTVGEFSAEGEGNSKKLSKKRAAL--SILQE 271 Query: 130 GGIEVAGTFVDK---YWKQR---ALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFR 180 V+K ++K+R LK+G + + L + AK PEY + Sbjct: 272 LKKLPVLPVVEKPKVHYKKRPKTILKTGPEYGQGMNPISRLAQIQQAKKEKEPEYMLLSE 331 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G F + V++ G G +K+ A++ AA +L + G Sbjct: 332 RGMPRRREFIMQVKV-GTEVTTGTGPNKKVAKRNAAEAMLLQLG 374 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P+YK+ GP H FTV + + S + A+ A + L Sbjct: 20 NRIQPQYKLLNEKGPAHAKIFTVQLCLGNQVWES-EGSSIKKAQHSTATKAL 70 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 144 KVFYVQLTVGNNE-FIGEGRTRQAARHNAAMKALQAL 179 >gi|308081633|ref|NP_001183890.1| hypothetical protein LOC100502483 [Zea mays] gi|238015288|gb|ACR38679.1| unknown [Zea mays] Length = 520 Score = 68.2 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE A P Y T RSG H P FT VE++G+ A +K+ AE+ AA Sbjct: 88 YKNLLQEVAQRVGAPLPLY-TTERSGLGHLPVFTCTVELAGITFAGDPAKNKKQAEKNAA 146 Query: 217 AE---VLKRE 223 + LK+ Sbjct: 147 SAAWSALKQL 156 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 K +LQE A P Y R GPDH PRF V +G Sbjct: 2 YKNQLQELAQRSCFNLPSYTCL-REGPDHAPRFKAAVNFNGE 42 >gi|281352310|gb|EFB27894.1| hypothetical protein PANDA_007403 [Ailuropoda melanoleuca] Length = 296 Score = 68.2 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 102 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 160 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 161 KQAKRNAAEKFLAK 174 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ H P FT V + + G SK+ A+ Sbjct: 16 KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 73 Query: 215 AAAEVLK 221 AA + Sbjct: 74 AAEAAIN 80 >gi|57208663|emb|CAI42819.1| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens] Length = 494 Score = 68.2 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E + K K S ++ + + + L + AK PEY + G F Sbjct: 178 ERVKPRIKKKTKPIVKTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFV 237 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + V++ G A+G +K+ A++ AA +L+ G Sbjct: 238 MQVKV-GNHTAEGTGTNKKVAKRNAAENMLEILG 270 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 110 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 167 Query: 223 E 223 Sbjct: 168 L 168 >gi|213417919|ref|NP_001132990.1| interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 3 [Homo sapiens] gi|332209456|ref|XP_003253828.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 2 [Nomascus leucogenys] gi|37955186|gb|AAP20061.1| HSD14 [Homo sapiens] gi|119631439|gb|EAX11034.1| protein kinase, interferon-inducible double stranded RNA dependent activator, isoform CRA_a [Homo sapiens] Length = 288 Score = 68.2 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 94 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 152 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 153 KQAKRNAAEKFLAK 166 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ H P FT V + + G SK+ A+ Sbjct: 8 KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 65 Query: 215 AAAEVLK 221 AA + Sbjct: 66 AAEAAIN 72 >gi|218189128|gb|EEC71555.1| hypothetical protein OsI_03907 [Oryza sativa Indica Group] Length = 1030 Score = 68.2 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 10/69 (14%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-----APAQGMDCSKRAA 211 K++LQ +A K + P Y+ R GP H RF VV + G + + A Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTI-REGPGHASRFKSVVTVDGKAFESPEYF----HTVKEA 141 Query: 212 EQVAAAEVL 220 E AA L Sbjct: 142 ESAAAKLAL 150 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM--DCSKRAAEQV 214 K+ LQE + PEY +G H P F V ++G+ S + A + Sbjct: 2 YKSRLQELCQQRRWAPPEY-THRCAGLAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60 Query: 215 AAAEV 219 AA Sbjct: 61 AAKAA 65 Score = 55.1 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 3/66 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE A P Y T G P F V QG +K+ AE A Sbjct: 170 YKNLLQELAQKHGFSLPVYSTTS-DGSVQVPMFKSTVVFQD-GSFQGEPANTKKQAEMNA 227 Query: 216 AAEVLK 221 A + Sbjct: 228 ARVAFQ 233 >gi|75251129|sp|Q5N8Z0|DRB1_ORYSJ RecName: Full=Double-stranded RNA-binding protein 1; AltName: Full=dsRNA-binding protein 1 gi|56785214|dbj|BAD82066.1| putative dsRNA-binding protein ODB1 [Oryza sativa Japonica Group] Length = 441 Score = 68.2 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 10/69 (14%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-----APAQGMDCSKRAA 211 K++LQ +A K + P Y+ R GP H RF VV + G + + A Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTI-REGPGHASRFKSVVTVDGKAFESPEYF----HTVKEA 141 Query: 212 EQVAAAEVL 220 E AA L Sbjct: 142 ESAAAKLAL 150 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM--DCSKRAAEQV 214 K+ LQE + PEY +GP H P F V ++G+ S + A + Sbjct: 2 YKSRLQELCQQRRWAPPEY-THRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60 Query: 215 AAAEV 219 AA Sbjct: 61 AAKAA 65 Score = 55.1 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 3/66 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE A P Y T G P F V QG +K+ AE A Sbjct: 170 YKNLLQELAQKHGFSLPVYSTTS-DGSVQVPMFKSTVVFQD-GSFQGEPANTKKQAEMNA 227 Query: 216 AAEVLK 221 A + Sbjct: 228 ARVAFQ 233 >gi|170044459|ref|XP_001849864.1| 39S ribosomal protein L44 [Culex quinquefasciatus] gi|167867604|gb|EDS30987.1| 39S ribosomal protein L44 [Culex quinquefasciatus] Length = 327 Score = 68.2 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 78/240 (32%), Gaps = 41/240 (17%) Query: 11 KRIGYAFANRSLLEKALTHSSI-SHSYQE--------------SYERLEFLGDRILGLLI 55 +R+ F + LL++A TH S + Q+ L LG ++ + Sbjct: 70 RRLSEQF-DAKLLQQAFTHRSFIAQEEQKQAEVGIVQPELGLSDNGELITLGGSLINQYV 128 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 L + + L S + + V+ L I ++ ++ Sbjct: 129 EAFLLTALPKLPQEGIGAIVGHLTSDASLAHVSSHLGTKDIILAATFPVDQ------TLL 182 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-------KFRRDAKTELQEWAHAK 168 AD +++L+ AL G E A FV + + + + D L+E+ K Sbjct: 183 ADTIKALVGALQRSSGDERAFLFVRDFICTQLNQQDVNEYWTIERPLD---LLKEYCQEK 239 Query: 169 FGVTPEYKVTFRSG-----PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE + G H+ V + + G A AA + L++ Sbjct: 240 KLGEPEPRSIGLVGKNTLLAAHN----VAIYCNKQFVGSGFGEDVDTAIDEAARDALRQL 295 >gi|164508746|emb|CAM07148.1| double stranded RNA activated protein kinase 2 [Tetraodon nigroviridis] Length = 424 Score = 67.8 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E A + Y+ GPDH RF V ++G A +G +KR A+ Sbjct: 2 KNYISLLNEQAQKQGWSL-RYEDVGCDGPDHIKRFRVRAIVNGRAFPEGAGKNKRDAKHK 60 Query: 215 AAAEV 219 AA Sbjct: 61 AAENA 65 >gi|62901980|gb|AAY18941.1| DKFZp564I0123 [synthetic construct] Length = 337 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 143 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 201 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 202 KQAKRNAAEKFLAK 215 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ H P FT V + + G SK+ A+ Sbjct: 57 KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 114 Query: 215 AAAEVLK 221 AA + Sbjct: 115 AAEAAIN 121 >gi|303320123|ref|XP_003070061.1| 54S ribosomal protein L3, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|240109747|gb|EER27916.1| 54S ribosomal protein L3, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|320031896|gb|EFW13853.1| 60S ribosomal protein L3 [Coccidioides posadasii str. Silveira] Length = 372 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 45/251 (17%), Positives = 78/251 (31%), Gaps = 56/251 (22%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L + L SS S Q + + LG ++L S + + + G + + V + Sbjct: 90 LARTLVDSSADPSLQFNNKSFAVLGSKLLSYYTSEHIISTYPRLPMGVIWAAVWAYVGHK 149 Query: 83 TCSQVARELDLA--------------SFIRVSS-------------------------DL 103 S +++E + F R+ Sbjct: 150 ALSAISQEWGIEHAAAPGCEVDPGLLQFKRLPPQTDMVENGHTLHRGVSARIVYDNEFGE 209 Query: 104 RKD----VCSFMTSIQADV--VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--- 154 R + + QA+ V++L+ A+YL G VA F +++ R L Sbjct: 210 RPSQPSPGVEGVPTTQANATFVQALMGAIYLHCGRPVAKQFFKEHFMSRQLPVADLFSFA 269 Query: 155 ---RDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRA 210 RD L + + P ++ +G P F V + +G S Sbjct: 270 QPTRD----LTKLCAREGFERPVARIISETGRLSRHPVFVVGIFSGADLLGEGSGPSLTE 325 Query: 211 AEQVAAAEVLK 221 A AA LK Sbjct: 326 ARFRAAVAALK 336 >gi|332207755|ref|XP_003252961.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 3 [Nomascus leucogenys] Length = 577 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ G A+G +K+ A++ A Sbjct: 286 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 344 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 345 AENMLEILG 353 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 191 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 248 Query: 223 E 223 Sbjct: 249 L 249 >gi|332207753|ref|XP_003252960.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 2 [Nomascus leucogenys] gi|332207761|ref|XP_003252964.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 6 [Nomascus leucogenys] Length = 502 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ G A+G +K+ A++ A Sbjct: 211 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 269 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 270 AENMLEILG 278 >gi|332207751|ref|XP_003252959.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 1 [Nomascus leucogenys] gi|332207757|ref|XP_003252962.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 4 [Nomascus leucogenys] gi|332207759|ref|XP_003252963.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 5 [Nomascus leucogenys] Length = 496 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ G A+G +K+ A++ A Sbjct: 205 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 263 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 264 AENMLEILG 272 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 110 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 167 Query: 223 E 223 Sbjct: 168 L 168 >gi|193787146|dbj|BAG52352.1| unnamed protein product [Homo sapiens] Length = 365 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ G A+G +K+ A++ A Sbjct: 74 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 132 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 133 AENMLEILG 141 Score = 42.4 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + G +G SK+ +++ AA VL+ Sbjct: 2 KNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEEL 37 >gi|158256406|dbj|BAF84176.1| unnamed protein product [Homo sapiens] Length = 577 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ G A+G +K+ A++ A Sbjct: 286 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 344 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 345 AENMLEILG 353 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 191 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 248 Query: 223 E 223 Sbjct: 249 L 249 >gi|114682577|ref|XP_001166582.1| PREDICTED: staufen isoform 1 [Pan troglodytes] Length = 497 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ G A+G +K+ A++ A Sbjct: 205 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 263 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 264 AENMLEILG 272 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 110 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 167 Query: 223 E 223 Sbjct: 168 L 168 >gi|114682565|ref|XP_514710.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 8 [Pan troglodytes] Length = 577 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ G A+G +K+ A++ A Sbjct: 286 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 344 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 345 AENMLEILG 353 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 191 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 248 Query: 223 E 223 Sbjct: 249 L 249 >gi|114682567|ref|XP_001166711.1| PREDICTED: staufen isoform 4 [Pan troglodytes] gi|114682569|ref|XP_001166741.1| PREDICTED: staufen isoform 5 [Pan troglodytes] gi|114682571|ref|XP_001166806.1| PREDICTED: staufen isoform 6 [Pan troglodytes] gi|114682573|ref|XP_001166840.1| PREDICTED: staufen isoform 7 [Pan troglodytes] Length = 496 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ G A+G +K+ A++ A Sbjct: 205 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 263 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 264 AENMLEILG 272 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 110 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 167 Query: 223 E 223 Sbjct: 168 L 168 >gi|114682579|ref|XP_001166642.1| PREDICTED: staufen isoform 2 [Pan troglodytes] Length = 492 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ G A+G +K+ A++ A Sbjct: 205 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 263 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 264 AENMLEILG 272 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 110 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 167 Query: 223 E 223 Sbjct: 168 L 168 >gi|62088702|dbj|BAD92798.1| staufen isoform b variant [Homo sapiens] Length = 591 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ G A+G +K+ A++ A Sbjct: 300 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 358 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 359 AENMLEILG 367 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 205 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 262 Query: 223 E 223 Sbjct: 263 L 263 >gi|4335947|gb|AAD17530.1| staufen protein [Homo sapiens] gi|4335951|gb|AAD17532.1| staufen protein [Homo sapiens] gi|4335953|gb|AAD17533.1| staufen protein [Homo sapiens] Length = 496 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ G A+G +K+ A++ A Sbjct: 205 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 263 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 264 AENMLEILG 272 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 110 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 167 Query: 223 E 223 Sbjct: 168 L 168 >gi|4335949|gb|AAD17531.1| staufen protein [Homo sapiens] Length = 577 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ G A+G +K+ A++ A Sbjct: 286 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 344 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 345 AENMLEILG 353 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 191 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 248 Query: 223 E 223 Sbjct: 249 L 249 >gi|209364604|ref|NP_001126609.1| double-stranded RNA-binding protein Staufen homolog 1 [Pongo abelii] gi|55732106|emb|CAH92759.1| hypothetical protein [Pongo abelii] Length = 495 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ G A+G +K+ A++ A Sbjct: 204 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 262 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 263 AENMLEILG 271 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 109 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 166 Query: 223 E 223 Sbjct: 167 L 167 >gi|82659083|ref|NP_004593.2| double-stranded RNA-binding protein Staufen homolog 1 isoform a [Homo sapiens] gi|82659085|ref|NP_059346.2| double-stranded RNA-binding protein Staufen homolog 1 isoform a [Homo sapiens] gi|82659089|ref|NP_059348.2| double-stranded RNA-binding protein Staufen homolog 1 isoform a [Homo sapiens] gi|10944134|emb|CAC14084.1| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens] gi|13276703|emb|CAB66536.1| hypothetical protein [Homo sapiens] gi|63102431|gb|AAH95397.1| Staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens] gi|119596075|gb|EAW75669.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_a [Homo sapiens] gi|119596078|gb|EAW75672.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_a [Homo sapiens] gi|119596080|gb|EAW75674.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_a [Homo sapiens] gi|158259179|dbj|BAF85548.1| unnamed protein product [Homo sapiens] Length = 496 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ G A+G +K+ A++ A Sbjct: 205 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 263 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 264 AENMLEILG 272 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 110 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 167 Query: 223 E 223 Sbjct: 168 L 168 >gi|82659087|ref|NP_059347.2| double-stranded RNA-binding protein Staufen homolog 1 isoform b [Homo sapiens] gi|90185286|sp|O95793|STAU1_HUMAN RecName: Full=Double-stranded RNA-binding protein Staufen homolog 1 gi|10944135|emb|CAC14085.1| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens] gi|29792190|gb|AAH50432.1| Staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens] gi|119596077|gb|EAW75671.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_c [Homo sapiens] gi|119596079|gb|EAW75673.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_c [Homo sapiens] gi|168277710|dbj|BAG10833.1| double-stranded RNA-binding protein Staufen homolog 1 [synthetic construct] gi|190690419|gb|ACE86984.1| staufen, RNA binding protein, homolog 1 (Drosophila) protein [synthetic construct] gi|190691797|gb|ACE87673.1| staufen, RNA binding protein, homolog 1 (Drosophila) protein [synthetic construct] Length = 577 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ G A+G +K+ A++ A Sbjct: 286 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 344 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 345 AENMLEILG 353 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 191 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 248 Query: 223 E 223 Sbjct: 249 L 249 >gi|114581966|ref|XP_001156031.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] Length = 270 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 76 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 134 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 135 KQAKRNAAEKFLAK 148 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 1/54 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K P Y+ H P FT V + + G SK+ A+ AA + Sbjct: 2 KTKNIPVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAIN 54 >gi|291391824|ref|XP_002712359.1| PREDICTED: protein kinase, interferon-inducible double stranded RNA dependent activator [Oryctolagus cuniculus] Length = 314 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 120 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 178 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 179 KQAKRNAAEKFLAK 192 Score = 42.4 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ P FT V + + G SK+ A+ Sbjct: 34 KTPIQVLHEYGMKTKNI-PVYECERSDVQIRVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 91 Query: 215 AAAEVLK 221 AA + Sbjct: 92 AAEAAIN 98 >gi|297668947|ref|XP_002812678.1| PREDICTED: LOW QUALITY PROTEIN: interferon-inducible double stranded RNA-dependent protein kinase activator A-like [Pongo abelii] Length = 313 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 177 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 178 KQAKRNAAEKFLAK 191 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ H P FT V + + G SK+ A+ Sbjct: 33 KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90 Query: 215 AAAEVLK 221 AA + Sbjct: 91 AAEAAIN 97 >gi|297746261|emb|CBI16317.3| unnamed protein product [Vitis vinifera] Length = 280 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 6/71 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE A P+Y TFRSG H P FT VE++G+ G +K+ AE+ A Sbjct: 88 YKNLLQEIAQRVGAPLPQY-TTFRSGLGHLPVFTGTVELAGIT-FTGEPAKNKKQAEKNA 145 Query: 216 AAEV---LKRE 223 A LK+ Sbjct: 146 AMAAWSSLKQL 156 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212 K +LQE A P Y R GPDH PRF V +G + R AE Sbjct: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFES---PNYCTTLRQAE 57 Query: 213 QVAAAEVLK 221 AA L Sbjct: 58 HSAAEVALN 66 >gi|225435325|ref|XP_002285171.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 413 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 6/71 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE A P+Y TFRSG H P FT VE++G+ G +K+ AE+ A Sbjct: 88 YKNLLQEIAQRVGAPLPQY-TTFRSGLGHLPVFTGTVELAGIT-FTGEPAKNKKQAEKNA 145 Query: 216 AAEV---LKRE 223 A LK+ Sbjct: 146 AMAAWSSLKQL 156 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212 K +LQE A P Y R GPDH PRF V +G + R AE Sbjct: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFES---PNYCTTLRQAE 57 Query: 213 QVAAAEVLK 221 AA L Sbjct: 58 HSAAEVALN 66 >gi|147853140|emb|CAN80689.1| hypothetical protein VITISV_005501 [Vitis vinifera] Length = 403 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 6/71 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE A P+Y TFRSG H P FT VE++G+ G +K+ AE+ A Sbjct: 88 YKNLLQEIAQRVGAPLPQY-TTFRSGLGHLPVFTGTVELAGIT-FTGEPAKNKKQAEKNA 145 Query: 216 AAEV---LKRE 223 A LK+ Sbjct: 146 AMAAWSSLKQL 156 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212 K +LQE A P Y R GPDH PRF V +G + R AE Sbjct: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFES---PNYCTTLRQAE 57 Query: 213 QVAAAEVLK 221 AA L Sbjct: 58 HSAAEVALN 66 >gi|301766900|ref|XP_002918870.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A-like [Ailuropoda melanoleuca] Length = 313 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 177 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 178 KQAKRNAAEKFLAK 191 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ H P FT V + + G SK+ A+ Sbjct: 33 KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90 Query: 215 AAAEVLK 221 AA + Sbjct: 91 AAEAAIN 97 >gi|194222350|ref|XP_001497407.2| PREDICTED: similar to protein kinase, interferon-inducible double stranded RNA dependent activator [Equus caballus] Length = 364 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 170 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 228 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 229 KQAKRNAAEKFLAK 242 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ H P FT V + + G SK+ A+ Sbjct: 84 KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 141 Query: 215 AAAEVLK 221 AA + Sbjct: 142 AAEAAIN 148 >gi|4505581|ref|NP_003681.1| interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 1 [Homo sapiens] gi|109100224|ref|XP_001098685.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 2 [Macaca mulatta] gi|114581964|ref|XP_515940.2| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 2 [Pan troglodytes] gi|332209454|ref|XP_003253827.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 1 [Nomascus leucogenys] gi|74735517|sp|O75569|PRKRA_HUMAN RecName: Full=Interferon-inducible double stranded RNA-dependent protein kinase activator A; AltName: Full=PKR-associated protein X; AltName: Full=PKR-associating protein X; AltName: Full=Protein activator of the interferon-induced protein kinase; AltName: Full=Protein kinase, interferon-inducible double stranded RNA-dependent activator gi|4927416|gb|AAD33099.1|AF083033_1 PKR-associating protein RAX [Homo sapiens] gi|3290198|gb|AAC25672.1| protein activator of the interferon-induced protein kinase [Homo sapiens] gi|12052756|emb|CAB66550.1| hypothetical protein [Homo sapiens] gi|14495717|gb|AAH09470.1| Protein kinase, interferon-inducible double stranded RNA dependent activator [Homo sapiens] gi|30583325|gb|AAP35907.1| protein kinase, interferon-inducible double stranded RNA dependent activator [Homo sapiens] gi|49065476|emb|CAG38556.1| PRKRA [Homo sapiens] gi|61362125|gb|AAX42165.1| protein kinase interferon-inducible double stranded RNA dependent activator [synthetic construct] gi|61362132|gb|AAX42166.1| protein kinase interferon-inducible double stranded RNA dependent activator [synthetic construct] gi|62630137|gb|AAX88882.1| unknown [Homo sapiens] gi|119631441|gb|EAX11036.1| protein kinase, interferon-inducible double stranded RNA dependent activator, isoform CRA_c [Homo sapiens] gi|158254634|dbj|BAF83290.1| unnamed protein product [Homo sapiens] gi|190689557|gb|ACE86553.1| protein kinase, interferon-inducible double stranded RNA dependent activator protein [synthetic construct] gi|307685745|dbj|BAJ20803.1| protein kinase, interferon-inducible double stranded RNA dependent activator [synthetic construct] Length = 313 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 177 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 178 KQAKRNAAEKFLAK 191 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ H P FT V + + G SK+ A+ Sbjct: 33 KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90 Query: 215 AAAEVLK 221 AA + Sbjct: 91 AAEAAIN 97 >gi|225451531|ref|XP_002275052.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296082307|emb|CBI21312.3| unnamed protein product [Vitis vinifera] Length = 481 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y RSGP H P FT VE++G+ +K+ AE+ AA Sbjct: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPVFTCTVELAGMNFTGESAKTKKQAEKNAA 146 Query: 217 AE---VLKR 222 LKR Sbjct: 147 IAAWSALKR 155 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212 K +LQE A P Y R GPDH PRF V +G S R AE Sbjct: 2 FKNQLQELAQRSCFNLPSYACI-REGPDHAPRFKASVNFNGEIFES---PSYCTTLRQAE 57 Query: 213 QVAAAEVLK 221 AA L Sbjct: 58 HAAAEVALN 66 >gi|147820257|emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera] Length = 552 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y RSGP H P FT VE++G+ +K+ AE+ AA Sbjct: 159 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPVFTCTVELAGMNFTGESAKTKKQAEKNAA 217 Query: 217 AE---VLKR 222 LKR Sbjct: 218 IAAWSALKR 226 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212 K +LQE A P Y R GPDH PRF V +G S R AE Sbjct: 73 FKNQLQELAQRSCFNLPSYACI-REGPDHAPRFKASVNFNGEIFES---PSYCTTLRQAE 128 Query: 213 QVAAAEVLK 221 AA L Sbjct: 129 HAAAEVALN 137 >gi|289807913|ref|ZP_06538542.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 61 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 3/45 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEF 45 M+ + + L++++GY F ++ LL++ALTH S S + ERLEF Sbjct: 20 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEF 61 >gi|114052769|ref|NP_001039335.1| interferon-inducible double stranded RNA-dependent protein kinase activator A [Bos taurus] gi|122135712|sp|Q2HJ92|PRKRA_BOVIN RecName: Full=Interferon-inducible double stranded RNA-dependent protein kinase activator A; AltName: Full=Protein activator of the interferon-induced protein kinase; AltName: Full=Protein kinase, interferon-inducible double stranded RNA-dependent activator gi|87578189|gb|AAI13247.1| Protein kinase, interferon-inducible double stranded RNA dependent activator [Bos taurus] gi|296490704|gb|DAA32817.1| interferon-inducible double stranded RNA-dependent protein kinase activator A [Bos taurus] Length = 313 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 177 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 178 KQAKRNAAEKFLAK 191 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ H P FT V + + G SK+ A+ Sbjct: 33 KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90 Query: 215 AAAEVLK 221 AA + Sbjct: 91 AAEAAIN 97 >gi|30584929|gb|AAP36730.1| Homo sapiens protein kinase, interferon-inducible double stranded RNA dependent activator [synthetic construct] gi|33303847|gb|AAQ02437.1| protein kinase, interferon-inducible double stranded RNA dependent activator [synthetic construct] gi|60653869|gb|AAX29627.1| protein kinase interferon-inducible double stranded RNA dependent activator [synthetic construct] Length = 314 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 177 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 178 KQAKRNAAEKFLAK 191 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ H P FT V + + G SK+ A+ Sbjct: 33 KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90 Query: 215 AAAEVLK 221 AA + Sbjct: 91 AAEAAIN 97 >gi|62897775|dbj|BAD96827.1| protein kinase, interferon-inducible double stranded RNA dependent activator variant [Homo sapiens] Length = 313 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 177 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 178 KQAKRNAAEKFLAK 191 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ H P FT V + + G SK+ A+ Sbjct: 33 KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90 Query: 215 AAAEVLK 221 AA + Sbjct: 91 AAEAAIN 97 >gi|74004908|ref|XP_545545.2| PREDICTED: similar to protein kinase, interferon-inducible double stranded RNA dependent activator [Canis familiaris] gi|194043952|ref|XP_001927740.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A [Sus scrofa] Length = 313 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 177 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 178 KQAKRNAAEKFLAK 191 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ H P FT V + + G SK+ A+ Sbjct: 33 KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90 Query: 215 AAAEVLK 221 AA + Sbjct: 91 AAEAAIN 97 >gi|6755162|ref|NP_036001.1| interferon-inducible double stranded RNA-dependent protein kinase activator A [Mus musculus] gi|81882073|sp|Q9WTX2|PRKRA_MOUSE RecName: Full=Interferon-inducible double stranded RNA-dependent protein kinase activator A; AltName: Full=PKR-associated protein X; AltName: Full=PKR-associating protein X; Short=RAX; AltName: Full=Protein activator of the interferon-induced protein kinase; AltName: Full=Protein kinase, interferon-inducible double stranded RNA-dependent activator gi|4927414|gb|AAD33098.1|AF083032_1 PKR-associating protein RAX [Mus musculus] gi|15030117|gb|AAH11311.1| Protein kinase, interferon inducible double stranded RNA dependent activator [Mus musculus] gi|74196321|dbj|BAE33056.1| unnamed protein product [Mus musculus] gi|123233430|emb|CAM25296.1| protein kinase, interferon inducible double stranded RNA dependent activator [Mus musculus] gi|148695265|gb|EDL27212.1| protein kinase, interferon inducible double stranded RNA dependent activator, isoform CRA_a [Mus musculus] Length = 313 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 177 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 178 KQAKRNAAEKFLAK 191 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ H P FT V + + G SK+ A+ Sbjct: 33 KTPIQVLHEYGMKTKNI-PVYECERSDVQVHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90 Query: 215 AAAEVLK 221 AA + Sbjct: 91 AAEAAIN 97 >gi|67078460|ref|NP_001019951.1| interferon-inducible double stranded RNA-dependent protein kinase activator A [Rattus norvegicus] gi|81908679|sp|Q4V8C7|PRKRA_RAT RecName: Full=Interferon-inducible double stranded RNA-dependent protein kinase activator A; AltName: Full=Protein activator of the interferon-induced protein kinase; AltName: Full=Protein kinase, interferon-inducible double stranded RNA-dependent activator gi|66910624|gb|AAH97446.1| Protein kinase, interferon inducible double stranded RNA dependent activator [Rattus norvegicus] Length = 313 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 177 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 178 KQAKRNAAEKFLAK 191 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ K P Y+ H P FT V + + G SK+ A+ Sbjct: 33 KTPIQVLHEYG-TKTKNIPVYECERSDVQVHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90 Query: 215 AAAEVLK 221 AA + Sbjct: 91 AAEAAIN 97 >gi|297822435|ref|XP_002879100.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata] gi|297324939|gb|EFH55359.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata] Length = 436 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE A P Y TFRSG H P FT VE++G+ G +K+ AE+ A Sbjct: 88 YKNLLQEIAQRVGAPLPRY-TTFRSGLGHQPVFTGTVELAGIT-FTGDPAKNKKQAEKNA 145 Query: 216 AAEV---LKRE 223 A LK+ Sbjct: 146 AMAAWSSLKQL 156 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215 K +LQE A P Y R GPDH PRF V +G CS R AE A Sbjct: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60 Query: 216 AAEVLKRE 223 A L Sbjct: 61 AEVALNAL 68 >gi|149022336|gb|EDL79230.1| protein kinase, interferon inducible double stranded RNA dependent activator, isoform CRA_b [Rattus norvegicus] Length = 313 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 177 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 178 KQAKRNAAEKFLAK 191 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ H P FT V + + G SK+ A+ Sbjct: 33 KTPIQVLHEYGMKTKNI-PVYECERSDVQVHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90 Query: 215 AAAEVLK 221 AA + Sbjct: 91 AAEAAIN 97 >gi|18401724|ref|NP_565672.1| DRB2 (DSRNA-BINDING PROTEIN 2); double-stranded RNA binding [Arabidopsis thaliana] gi|75266001|sp|Q9SKN2|DRB2_ARATH RecName: Full=Double-stranded RNA-binding protein 2; AltName: Full=dsRNA-binding protein 2; Short=AtDRB2 gi|4432839|gb|AAD20688.1| expressed protein [Arabidopsis thaliana] gi|14334606|gb|AAK59481.1| unknown protein [Arabidopsis thaliana] gi|17065634|gb|AAL33811.1| unknown protein [Arabidopsis thaliana] gi|330253020|gb|AEC08114.1| dsRNA-binding protein 2 [Arabidopsis thaliana] Length = 434 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE A P Y TFRSG H P FT VE++G+ G +K+ AE+ A Sbjct: 88 YKNLLQEIAQRVGAPLPRY-TTFRSGLGHQPVFTGTVELAGIT-FTGDPAKNKKQAEKNA 145 Query: 216 AAEV---LKRE 223 A LK+ Sbjct: 146 AMAAWSSLKQL 156 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215 K +LQE A P Y R GPDH PRF V +G CS R AE A Sbjct: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60 Query: 216 AAEVLKRE 223 A L Sbjct: 61 AEVALNAL 68 >gi|4572588|emb|CAB40082.1| staufen protein [Homo sapiens] Length = 496 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ G A+G +K+ A++ A Sbjct: 205 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 263 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 264 AENMLEILG 272 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 110 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 167 Query: 223 E 223 Sbjct: 168 L 168 >gi|195156001|ref|XP_002018889.1| GL26052 [Drosophila persimilis] gi|194115042|gb|EDW37085.1| GL26052 [Drosophila persimilis] Length = 470 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---AQGMDCSKRAAEQ 213 + LQE ++ G+TP Y++ G H+P F V A G SK+ A+ Sbjct: 145 PVSILQEIL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKEKDTPFTAMGAGRSKKEAKH 203 Query: 214 VAAAEVLKRE 223 AA ++ + Sbjct: 204 AAARALIDKL 213 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 1/73 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 K + LQE + P Y G H+ FT+ I G SK+ Sbjct: 251 DKIVGNPIGLLQELCMQRRWPPPTYATETEMGLPHERLFTIACTIL-QYREIGKGKSKKI 309 Query: 211 AEQVAAAEVLKRE 223 A++ AA ++ R Sbjct: 310 AKRSAAHKMWSRL 322 >gi|68476619|ref|XP_717602.1| likely mitochondrial ribosomal protein MRPL3 [Candida albicans SC5314] gi|68476766|ref|XP_717528.1| likely mitochondrial ribosomal protein MRPL3 [Candida albicans SC5314] gi|46439242|gb|EAK98562.1| likely mitochondrial ribosomal protein MRPL3 [Candida albicans SC5314] gi|46439319|gb|EAK98638.1| likely mitochondrial ribosomal protein MRPL3 [Candida albicans SC5314] Length = 404 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 66/224 (29%), Gaps = 50/224 (22%) Query: 46 LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA----------- 94 LG +L ++ L H+ +SL+ S++ + + Sbjct: 144 LGKSLLSYYVTEHLLIHYPRLPMKIHQAAVDSLMGNLALSEIGKTWGIEIDEVSKLDRFL 203 Query: 95 ----SFIRVS------------SDLRKDVCSFMTS-----------------IQADVVES 121 F++ + S A V++ Sbjct: 204 GQESEFMKFGRLRYLYDQDKSDKFYNNNGNYKNVSGIEEVIDEQGKLSQQDLAYASAVKA 263 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHA-KFGVTPEYKVT 178 +I LY G A F++ + R + + + +EL +F ++ Sbjct: 264 IIGGLYTHCGESAAKDFINDHILSRKIPLDQMFEFKRPISELIRLCDKLEFKQPVSIRLI 323 Query: 179 FRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +G H P+F V + +G+ S + A+ A+ L Sbjct: 324 AETGRLSAH-PQFLAGVFVGNDKIGEGIGSSLKEAQIRASINSL 366 >gi|328848596|gb|EGF97802.1| hypothetical protein MELLADRAFT_27059 [Melampsora larici-populina 98AG31] Length = 220 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 66/211 (31%), Gaps = 27/211 (12%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 E L LG+ +LG+L + + + V TC+ V+R + S Sbjct: 2 HNEELATLGNSLLGVLGAEWIDRRYPHLPNKAFQAALTMYVGPRTCADVSRIWGVCSAAG 61 Query: 99 VSSDLRKDVCS-------------------FMTSIQ-----ADVVESLIAALYLDGGIEV 134 +S+ ++ F + A V + + +Y G++ Sbjct: 62 LSNLTIENKPRPGLLRWRRAETALGQKASGFKQGVLYEDAMASVSRAFVGLVYTLSGMKA 121 Query: 135 AGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTV 191 FV W R + G + + L+ P ++ SG F V Sbjct: 122 TREFVAANWLSRKAQVGDLLKFTNPFIVLKYTLAKYDREPPVARLLRESGRASATAMFVV 181 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + S + AE A + L+R Sbjct: 182 GSYSGSMKLGEAYGTSMKMAEYRAHEDALRR 212 >gi|238878780|gb|EEQ42418.1| conserved hypothetical protein [Candida albicans WO-1] Length = 404 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 66/224 (29%), Gaps = 50/224 (22%) Query: 46 LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA----------- 94 LG +L ++ L H+ +SL+ S++ + + Sbjct: 144 LGKSLLSYYVTEHLLIHYPRLPMKIHQAAVDSLMGNLALSEIGKTWGIEIDEVSKLDRFL 203 Query: 95 ----SFIRVS------------SDLRKDVCSFMTS-----------------IQADVVES 121 F++ + S A V++ Sbjct: 204 GQESEFMKFGRLRYLYDQDKSDKFYNNNGNYKNVSGIEEVIDEQGKLSQQDLAYASAVKA 263 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHA-KFGVTPEYKVT 178 +I LY G A F++ + R + + + +EL +F ++ Sbjct: 264 IIGGLYTHCGESAAKDFINDHILSRKIPLDQMFEFKRPISELIRLCDKLEFKQPVSIRLI 323 Query: 179 FRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +G H P+F V + +G+ S + A+ A+ L Sbjct: 324 AETGRLSAH-PQFLAGVFVGNDKIGEGIGSSLKEAQIRASINSL 366 >gi|241998518|ref|XP_002433902.1| staufen, putative [Ixodes scapularis] gi|215495661|gb|EEC05302.1| staufen, putative [Ixodes scapularis] Length = 651 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK P Y + G F + + G QG +K+ A+++A Sbjct: 371 NPISRLIQIQQAKKEPEPSYSLVSERGDPRQREFVLQCVL-GALTTQGAGPNKKTAKRLA 429 Query: 216 AAEVLKREG 224 A +L++ G Sbjct: 430 AEAMLQKLG 438 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 V +Y++ SGP H FTVV+ ++G Q S + Sbjct: 93 NKVALQYRLVEESGPPHKKNFTVVLRLAGNEY-QASGTSIK 132 >gi|218184757|gb|EEC67184.1| hypothetical protein OsI_34054 [Oryza sativa Indica Group] Length = 506 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE A P Y T RSG H P FT VE++G+ G +K+ AE+ A Sbjct: 80 YKNLLQEVAQRVGAPLPSY-TTERSGLGHLPVFTCTVELAGIT-FTGDPAKNKKQAEKNA 137 Query: 216 AAEV---LKRE 223 A+ L++ Sbjct: 138 ASAAWSSLRQL 148 >gi|114107707|gb|AAI22893.1| stau1 protein [Xenopus (Silurana) tropicalis] Length = 686 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+GM +K+ A++ Sbjct: 370 MNPISRLAQIQQAKKDKEPEYILITERGLPRRREFVMQVKV-GNHSAEGMGTNKKVAKRN 428 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 429 AAENMLELLG 438 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K ++ ++VT +GP H F V + G +G SK+ +++ AA VL+ Sbjct: 280 KRNMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGEGEGKSKKISKKNAAISVLEEL 334 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + P YK+ GP H FTV + + + S Sbjct: 89 NKIQPIYKLLSEQGPAHSKMFTVQLTLGDQYW-EAEGTS 126 >gi|62858029|ref|NP_001016542.1| staufen, RNA binding protein, homolog 1 [Xenopus (Silurana) tropicalis] Length = 614 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+GM +K+ A++ Sbjct: 298 MNPISRLAQIQQAKKDKEPEYILITERGLPRRREFVMQVKV-GNHSAEGMGTNKKVAKRN 356 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 357 AAENMLELLG 366 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K ++ ++VT +GP H F V + G +G SK+ +++ AA VL+ Sbjct: 208 KRNMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGEGEGKSKKISKKNAAISVLEEL 262 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + P YK+ GP H FTV + + + S Sbjct: 11 NKIQPVYKLLSEQGPAHSKMFTVQLTLGDQYW-EAEGTS 48 >gi|115482562|ref|NP_001064874.1| Os10g0480500 [Oryza sativa Japonica Group] gi|75261835|sp|Q9AV50|DRB6_ORYSJ RecName: Full=Double-stranded RNA-binding protein 6; AltName: Full=dsRNA-binding protein 5; Short=OsDRB5; AltName: Full=dsRNA-binding protein 6 gi|13384384|gb|AAK21352.1|AC024594_16 putative extensin [Oryza sativa Japonica Group] gi|31432702|gb|AAP54300.1| Double-stranded RNA binding motif family protein, expressed [Oryza sativa Japonica Group] gi|113639483|dbj|BAF26788.1| Os10g0480500 [Oryza sativa Japonica Group] gi|125575161|gb|EAZ16445.1| hypothetical protein OsJ_31914 [Oryza sativa Japonica Group] gi|215694820|dbj|BAG90011.1| unnamed protein product [Oryza sativa Japonica Group] Length = 514 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE A P Y T RSG H P FT VE++G+ G +K+ AE+ A Sbjct: 88 YKNLLQEVAQRVGAPLPSY-TTERSGLGHLPVFTCTVELAGIT-FTGDPAKNKKQAEKNA 145 Query: 216 AAEV---LKRE 223 A+ L++ Sbjct: 146 ASAAWSSLRQL 156 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 K +LQE A P Y R GPDH PRF V +G Sbjct: 2 YKNQLQELAQRSCFNLPAYTCL-REGPDHAPRFKAAVNFNGE 42 >gi|89271756|emb|CAJ83112.1| novel protein similar to staufen [Xenopus (Silurana) tropicalis] Length = 696 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+GM +K+ A++ Sbjct: 380 MNPISRLAQIQQAKKDKEPEYILITERGLPRRREFVMQVKV-GNHSAEGMGTNKKVAKRN 438 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 439 AAENMLELLG 448 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K ++ ++VT +GP H F V + G +G SK+ +++ AA VL+ Sbjct: 290 KRNMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGEGEGKSKKISKKNAAISVLEEL 344 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + P YK+ GP H FTV + + + S Sbjct: 93 NKIQPVYKLLSEQGPAHSKMFTVQLTLGDQYW-EAEGTS 130 >gi|170586588|ref|XP_001898061.1| Double-stranded RNA binding motif family protein [Brugia malayi] gi|158594456|gb|EDP33040.1| Double-stranded RNA binding motif family protein [Brugia malayi] Length = 790 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 3/93 (3%) Query: 135 AGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 A + + + +K + + + L + A+ P++++ G F + Sbjct: 421 APKELKRRTISKDMKMNPEYGHQINPVSRLMQIMQARKQNEPKFQLVAERGQSRYKEFVM 480 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V +G+ +K+ A++ AA VL R G Sbjct: 481 EVICDDGLRCEGIGPNKKLAKRAAAEAVLARIG 513 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 24/48 (50%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 EYK+ SGP H +FTV + ++ G S + A+Q AA L Sbjct: 71 EYKLMDESGPAHKKQFTVSLVLTPDQVFYGKGASIKKAQQSAAETALN 118 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLK 221 + E+ V GP HD + + ++ + A G SK+ A+Q A + +L Sbjct: 337 CALHMRMNVEFLVLKEEGPAHDRHYLLRCKLISAERVISADGEGSSKKIAKQNACSLMLT 396 Query: 222 RE 223 + Sbjct: 397 KL 398 >gi|326495676|dbj|BAJ85934.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 364 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y RSGP H P F VE++GL+ A +K+ AE+ AA Sbjct: 88 YKNLLQETAHRAGLKLPAYTTV-RSGPGHSPVFASSVELAGLSFAGDAARTKKQAEKNAA 146 Query: 217 A---EVLKRE 223 LK+ Sbjct: 147 MTAWSALKQM 156 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 8/71 (11%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD----CSKRAAE 212 K +LQE A P Y T R GPDH PRF V +G + R AE Sbjct: 2 YKNQLQELAQRSCFSLPSYVCT-REGPDHAPRFKATVTFNGETF---HGPTCCTTLRQAE 57 Query: 213 QVAAAEVLKRE 223 AA L R Sbjct: 58 HAAAEVALARL 68 >gi|291409122|ref|XP_002720862.1| PREDICTED: adenosine deaminase, RNA-specific, B2-like [Oryctolagus cuniculus] Length = 734 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y++ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 115 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 171 Query: 217 AEVLK 221 LK Sbjct: 172 ELALK 176 Score = 35.8 bits (82), Expect = 5.1, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 7/67 (10%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQ 202 + R + R+ L E Y + F + V + G + Sbjct: 260 RPRPAPTAPGERNPVVVLNEL-----RSGLRYVCLSETAEKPRAKSFVMAVCVDGRT-FE 313 Query: 203 GMDCSKR 209 G SK+ Sbjct: 314 GSGRSKK 320 >gi|170104597|ref|XP_001883512.1| predicted protein [Laccaria bicolor S238N-H82] gi|164641576|gb|EDR05836.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1046 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%) Query: 141 KYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + + Q + S D L + P Y+V RSGP H +TVVV ++ + Sbjct: 720 RVFNQEGIDSPSPDVLSDPVRTLNDLCQHSGLYPPHYEV-ARSGPAHAEDWTVVVTVNDI 778 Query: 199 APAQGMDCSKRAAEQVAAAEVL 220 +G SK A++ AA L Sbjct: 779 EYGRGTASSKNNAKRAAAEIAL 800 >gi|194691820|gb|ACF79994.1| unknown [Zea mays] Length = 266 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K LQ +A + TP YKV G H P+FT VE+ + G K+ AEQ A Sbjct: 2 HKNRLQSFAERTYKKTPIYKVESE-GQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDA 60 Query: 216 AAEVLK 221 A + Sbjct: 61 ARVAYE 66 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAA 216 K+ L E+A P Y V F +V G A G +K+ AEQ AA Sbjct: 91 KSILIEFAVKTKTTLPSYSVVCVCLKKPLTLFAAIVVFDGNAY-HGESAPNKKDAEQNAA 149 Query: 217 AEVLK 221 V+K Sbjct: 150 RVVIK 154 >gi|212276238|ref|NP_001130203.1| hypothetical protein LOC100191297 [Zea mays] gi|194688536|gb|ACF78352.1| unknown [Zea mays] Length = 323 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K LQ +A + TP YKV G H P+FT VE+ + G K+ AEQ A Sbjct: 59 HKNRLQSFAERTYKKTPIYKVESE-GQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDA 117 Query: 216 AAEVLK 221 A + Sbjct: 118 ARVAYE 123 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAA 216 K+ L E+A P Y V F +V G A G +K+ AEQ AA Sbjct: 148 KSILIEFAVKTKTTLPSYSVVCVCLKKPLTLFAAIVVFDGNAY-HGESAPNKKDAEQNAA 206 Query: 217 AEVLK 221 V+K Sbjct: 207 RVVIK 211 >gi|148695266|gb|EDL27213.1| protein kinase, interferon inducible double stranded RNA dependent activator, isoform CRA_b [Mus musculus] Length = 210 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 16 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 74 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 75 KQAKRNAAEKFLAK 88 >gi|330917728|ref|XP_003297934.1| hypothetical protein PTT_08495 [Pyrenophora teres f. teres 0-1] gi|311329130|gb|EFQ93969.1| hypothetical protein PTT_08495 [Pyrenophora teres f. teres 0-1] Length = 409 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 77/277 (27%), Gaps = 59/277 (21%) Query: 3 ALRYSTLEKRIGYAFANR-SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 +++ L R+ +L + L H S + + L LG ++LG S L Sbjct: 97 SIKLHALRSRLSLPPRFPLQVLARTLVHPSADANPAFNNASLSILGRQLLGYYTSEWLIC 156 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLA--------------SFIRVSSD----- 102 + + + + + + VARE + F R+ + Sbjct: 157 TYPRLPMEVVFAAVEAYIGPKALATVAREWGIEAAAEPGGEVDPGLLQFKRIGAGDALPE 216 Query: 103 ------LRKDVCSFMTSIQADV----------------------------VESLIAALYL 128 + I V +LI AL++ Sbjct: 217 ALRRQVPWNWNVTTTHKIIKSDEFGSNNAGPSPHALEKTPVPVEEAAQSFVRALIGALHV 276 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE---LQEWAHAKFGVTPEYKVTFRSGP-D 184 G + F ++ R L D +T L + P ++ +G Sbjct: 277 HLGSPLVKRFYRDHFLSRHLDISTIF-DFRTPTRDLSWLCRREGFEPPVARLISETGRLS 335 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P F V V + S A A+A LK Sbjct: 336 RHPVFVVGVYSGRDKLGEASGSSLDEARIRASAAALK 372 >gi|213511414|ref|NP_001133664.1| double-stranded RNA-binding protein Staufen homolog 1 [Salmo salar] gi|209154860|gb|ACI33662.1| Double-stranded RNA-binding protein Staufen homolog 1 [Salmo salar] Length = 701 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V + G A+G+ SK+ A++ Sbjct: 380 MNPISRLAQIQQAKKEKEPEYNMLTERGLPRRREFVMQVMVCGQ-CAEGLGPSKKVAKKN 438 Query: 215 AAAEVLKREG 224 AA ++L+ G Sbjct: 439 AAEKMLELLG 448 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 13/102 (12%) Query: 133 EVAGTFVDKYWKQRALKSGKFRRDA--------KTEL-Q--EWAHAKFGVTPEYKVTFRS 181 + A + K+ L + K+E+ Q E A + ++V + Sbjct: 243 DAASKALKTLQKEPILLQQLPEMNGEDTEENLNKSEISQVFEIALKRNMP-VNFEVLKEA 301 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H F V V + G +G SK+ A+++AA VL+ Sbjct: 302 GPPHMKSFMVRVAV-GEFCGEGEGKSKKIAKKLAATAVLEEL 342 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + PEYK+ GP H F+V + + + S + A+ Sbjct: 86 NKIQPEYKLLCEQGPAHSKIFSVRLSLGDQHW-EAEGTSIKKAQ 128 >gi|322797373|gb|EFZ19485.1| hypothetical protein SINV_11443 [Solenopsis invicta] Length = 345 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 1/78 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 L S +A ELQE PEY + GP H FT+ +IS G Sbjct: 99 PPRLPSNVPFFNAVGELQELCAINNLQEPEYLLIKDIGPPHARIFTLRCKISNFEE-DGT 157 Query: 205 DCSKRAAEQVAAAEVLKR 222 +K+ A+ AA +++ R Sbjct: 158 ATTKKQAKHDAAKKMVDR 175 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE K G+ P+Y + G H FT V GL A G K+ A+ AA Sbjct: 5 PVSILQEMM-VKQGMIPDYDLIHDGGGRHVNTFTYRVSCDGLN-ATGTGRCKKDAKHEAA 62 Query: 217 AEVL 220 +L Sbjct: 63 KAML 66 >gi|242034167|ref|XP_002464478.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor] gi|241918332|gb|EER91476.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor] Length = 512 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE A P Y T RSG H P FT VE++G+ G +K+ AE+ A Sbjct: 88 YKNLLQEVAQRVGAPLPLY-TTERSGLGHLPVFTCTVELAGIT-FTGDPAKNKKQAEKNA 145 Query: 216 AAE---VLKRE 223 A+ LK+ Sbjct: 146 ASAAWSALKQL 156 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 K +LQE A P Y R GPDH PRF V +G Sbjct: 2 YKNQLQELAQRSCFNLPAYTCL-REGPDHAPRFKAAVNFNGE 42 >gi|156550835|ref|XP_001601132.1| PREDICTED: similar to RE14437p [Nasonia vitripennis] Length = 394 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 K + LQE ++ P+Y + G H+ +FT+V I G SK+ Sbjct: 178 EEKVVNNPIGSLQEMCMSRHWPPPKYSMEGEEGLPHERQFTIVCSILKYRQ-VGQGKSKK 236 Query: 210 AAEQVAAAEVLK 221 A++ AA ++ + Sbjct: 237 LAKRQAAHKMWQ 248 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG----LAPAQGMDCS 207 + LQE ++ G TP+Y++ G H+P F V ++ + A G S Sbjct: 78 PVSVLQELL-SRRGTTPKYELVQIEGAIHEPTFRYRVTVADVVDPIVSAMGTGRS 131 >gi|302826423|ref|XP_002994689.1| hypothetical protein SELMODRAFT_432592 [Selaginella moellendorffii] gi|300137140|gb|EFJ04244.1| hypothetical protein SELMODRAFT_432592 [Selaginella moellendorffii] Length = 243 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 7/103 (6%) Query: 112 TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 + D++ES+ A++LD G+ + V + + + ELQE + Sbjct: 28 PKVLGDILESIAGAIFLDTGLAADEVWKVFERLLEPMVTPDTLPVHPVRELQERCQQQAE 87 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 EY+ + TV V + G+ + K+ A++ Sbjct: 88 GL-EYRASREGSIA-----TVEVFVDGVQIGCAQNTQKKMAQK 124 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 6/72 (8%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-----QGMD-CSKRAAEQV 214 L + + P+Y++ SGP H RFT V ++ +G S + A+ Sbjct: 163 LNDICLQRQWPMPQYRLLSESGPAHAKRFTYTVRVNTRERGWTDECEGQAMPSMKKAKDS 222 Query: 215 AAAEVLKREGIW 226 AA +L+ W Sbjct: 223 AALVLLEVLKQW 234 >gi|224069354|ref|XP_002302963.1| predicted protein [Populus trichocarpa] gi|222844689|gb|EEE82236.1| predicted protein [Populus trichocarpa] Length = 452 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 12/71 (16%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS------KRA 210 K LQE+ P Y+ GP H PRF V + G S ++A Sbjct: 140 YKNRLQEYTQKSSLQLPVYQTLNE-GPAHMPRFRSTVWVDGARY-----RSQKTFLHRKA 193 Query: 211 AEQVAAAEVLK 221 AEQ A L+ Sbjct: 194 AEQDVANLALE 204 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K+ L E+A P Y G P F + G++ +K+ AEQ+AA Sbjct: 226 KSILNEFAVKVNREKPTYNTVQSPGL--LPVFISTLVFDGVSYTGDAGRNKKEAEQLAAR 283 Query: 218 EVL 220 V+ Sbjct: 284 AVI 286 >gi|36963075|gb|AAQ87664.1| staufen [Mus musculus] Length = 436 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 77/200 (38%), Gaps = 23/200 (11%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELDLASF-- 96 ERLE + G N + ++ E++++ N V+ E+ +QVARE Sbjct: 79 ERLE-----VNGREAEEENLNKSEISQVFEIALKRNLPVNFESFLLTQVARESGPPHMKN 133 Query: 97 --IRVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 RV + + + +++ L + V K+++ + K Sbjct: 134 VVTRVPVGEFVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVER-VKPRIKKKSQPTCK 192 Query: 153 FR--------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ G A+G+ Sbjct: 193 LQTAPDYGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGV 251 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 252 GTNKKVAKRNAAENMLEILG 271 >gi|222619325|gb|EEE55457.1| hypothetical protein OsJ_03618 [Oryza sativa Japonica Group] Length = 351 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 10/69 (14%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-----APAQGMDCSKRAA 211 K++LQ +A K + P Y+ R GP H RF VV + G + + A Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTI-REGPGHASRFKSVVTVDGKAFESPEYF----HTVKEA 141 Query: 212 EQVAAAEVL 220 E AA L Sbjct: 142 ESAAAKLAL 150 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM--DCSKRAAEQV 214 K+ LQE + PEY +GP H P F V ++G+ S + A + Sbjct: 2 YKSRLQELCQQRRWAPPEY-THRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60 Query: 215 AAAEVL 220 AA L Sbjct: 61 AAKAAL 66 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 3/66 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE A P Y T G P F V QG +K+ AE A Sbjct: 170 YKNLLQELAQKHGFSLPVYSTTS-DGSVQVPMFKSTVVFQD-GSFQGEPANTKKQAEMNA 227 Query: 216 AAEVLK 221 A + Sbjct: 228 ARVAFQ 233 >gi|322511164|gb|ADX06477.1| putative ribonuclease III [Organic Lake phycodnavirus 2] Length = 92 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 37/65 (56%) Query: 37 QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 Q S ERLEF+GD IL ++ L+ F A EG ++ + +LV + ++A +L L + Sbjct: 15 QSSNERLEFIGDGILEMITKYYLYKRFPDADEGFMTEKKINLVKNDHIGKLAYKLGLHKW 74 Query: 97 IRVSS 101 + +S Sbjct: 75 LLLSK 79 >gi|189189610|ref|XP_001931144.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187972750|gb|EDU40249.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 949 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 16/151 (10%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--------YQESYERLEFLGDRILGL 53 +A R +E+ IGY F + +AL ++ + + RL LGDR L L Sbjct: 84 AAARVGRVEESIGYTFKYKLYCIEALKQTNSTTPLYFQGVVINTDCNRRLALLGDRALDL 143 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +S + F + + V+ + +++L + +++ + Sbjct: 144 ALSEIWF--YTGNTLANYTAMSLKTVTRAALNTQGLQINLHKNLILATGATSAT----PN 197 Query: 114 IQADVVESLIAALYLDGG--IEVAGTFVDKY 142 A+ E+L+ A+Y+D G +E ++ Sbjct: 198 QVAETFEALLGAVYIDSGHDVEAVKRVINTL 228 >gi|307179783|gb|EFN67973.1| Double-stranded RNA-specific editase Adar [Camponotus floridanus] Length = 1657 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV ++GP H P FT+ V+I G +G +K+ A+ AA L+ Sbjct: 1088 TYKVVGQTGPTHAPIFTIAVQIDGQTY-EGKGRTKKMAKHAAAELALRN 1135 >gi|241779179|ref|XP_002399859.1| tar RNA-binding protein, putative [Ixodes scapularis] gi|215508538|gb|EEC17992.1| tar RNA-binding protein, putative [Ixodes scapularis] Length = 273 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 A++ + LQE P Y+ G H+ F + ++ L+ G Sbjct: 92 PAVEEDGIPGNPVGALQELCMKLRWRPPFYETVIEEGLPHERTFGISCLVNNLSE-MGKG 150 Query: 206 CSKRAAEQVAAAEVLK 221 SKR A++ AA ++++ Sbjct: 151 KSKRLAKRQAAYKMIQ 166 Score = 40.1 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 + LQE A+ +TPEYK+ G H P F Sbjct: 5 PISILQELC-ARNCLTPEYKLLSVEGAVHAPTF 36 >gi|148277633|ref|NP_001091684.1| adenosine deaminase acting on RNA [Apis mellifera] gi|146260809|gb|ABQ14707.1| adenosine deaminase [Apis mellifera] Length = 620 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV ++GP H P FT+ V+I G +G +K+ A+ AA L+ Sbjct: 49 VYKVVDQTGPTHAPIFTIAVQIDGQTY-EGKGRTKKMAKHAAAELALRN 96 >gi|321463676|gb|EFX74690.1| hypothetical protein DAPPUDRAFT_251609 [Daphnia pulex] Length = 282 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 61/193 (31%), Gaps = 43/193 (22%) Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------ 99 +G+LSV +++ +T + +A L ++ Sbjct: 36 PRYNQGQLSVLKSAITCNDTLAVIAVRTGLHLLLQHRLPAKQIEELESFVDHQNKNQHLF 95 Query: 100 ----------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQRA 147 SS+ + + AD E+LI AL D E V V Sbjct: 96 SLEKELVIISSSEGDRVFDIDYPKVYADAFETLIGALLRDCEREDKVIRKVVLNLMGDVI 155 Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +K LQ + + PE+K D F V++++ L G S Sbjct: 156 VKFHNNI--PVCPLQRVNQNR--IKPEFK---EEKNLPDGTFHVILKVKNLQSFHGSGPS 208 Query: 208 KRAAEQVAAAEVL 220 ++A+ AA + Sbjct: 209 MKSAKTAAAKLAI 221 >gi|118085593|ref|XP_418563.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 803 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 137 PKNALVQL--HELKPGLQYKMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 193 Query: 217 AEVLK 221 LK Sbjct: 194 ELALK 198 Score = 37.4 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 7/67 (10%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQ 202 + + + ++ L E Y + H F + V + G + Sbjct: 282 RHKMASKAESEKNPVVLLNEL-----RSGLRYVCLSETVEKQHIKSFVMAVRVDGRT-FE 335 Query: 203 GMDCSKR 209 G SK+ Sbjct: 336 GSGRSKK 342 >gi|15079052|ref|NP_149803.1| 340R [Invertebrate iridescent virus 6] gi|82012085|sp|Q91FI4|340R_IIV6 RecName: Full=DRBM domain-containing protein 340R gi|15042421|gb|AAK82201.1|AF303741_342 340R [Invertebrate iridescent virus 6] Length = 173 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---AQGMDCSKRAAEQVAAA 217 L E+ H P Y ++GPDH P F + I P G S + A++ AA Sbjct: 35 LNEFCHKNKYKPPSYTTLNQNGPDHSPTFNIECRIVDYKPNGKFIGSGLSMKEAKKNAAF 94 Query: 218 EVLKREGIWT 227 + +K + T Sbjct: 95 KTIKELNLLT 104 >gi|147856819|emb|CAN79168.1| hypothetical protein VITISV_028064 [Vitis vinifera] Length = 292 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAA 216 KT LQE H K PEY T + GP H+P F V + GL+ + S + A+ AA Sbjct: 12 KTRLQELCHRKRWNPPEYS-TRKDGPPHNPTFXATVSVGGLSFSTDHPARSSKEAQSNAA 70 Query: 217 AEVLK 221 ++ Sbjct: 71 GLAIQ 75 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE A + P Y T +SG H P F VEI G +K+ AE AA Sbjct: 223 YKNLLQEMARKEGYQLPVYS-TEKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLAEMNAA 281 Query: 217 AEV 219 Sbjct: 282 KAA 284 >gi|322518582|sp|B7E321|DRB5_ORYSJ RecName: Full=Double-stranded RNA-binding protein 5; AltName: Full=dsRNA-binding protein 2; Short=OsDRB2; AltName: Full=dsRNA-binding protein 5 gi|215765071|dbj|BAG86768.1| unnamed protein product [Oryza sativa Japonica Group] Length = 404 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y RSGP H P F+ VE++G++ A +K+ AE+ AA Sbjct: 88 YKNLLQETAHRAGLKLPVYTTV-RSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAA 146 Query: 217 AEV---LKREGIWT 227 LK+ I T Sbjct: 147 MAAWSSLKQSNIRT 160 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 8/73 (10%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAE 212 K +LQE A P Y T R GPDH PRF V +G S R AE Sbjct: 2 YKNQLQELAQRSCFSLPSYVCT-REGPDHAPRFKATVTFNGETF---DGPSNCTTLRQAE 57 Query: 213 QVAAAEVLKREGI 225 AA L R + Sbjct: 58 HAAAEVALARLSL 70 >gi|198476324|ref|XP_001357331.2| GA19915 [Drosophila pseudoobscura pseudoobscura] gi|198137644|gb|EAL34400.2| GA19915 [Drosophila pseudoobscura pseudoobscura] Length = 477 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---AQGMDCSKRAAEQ 213 + LQE ++ G+TP Y++ G H+P F V A G SK+ A+ Sbjct: 152 PVSILQEIL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKEKDTPFTAMGAGRSKKEAKH 210 Query: 214 VAAAEVLKRE 223 AA ++ + Sbjct: 211 AAARALIDKL 220 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 1/73 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 K + LQE + P Y G H+ FT+ I G SK+ Sbjct: 258 DKIVGNPIGLLQELCMQRRWPPPTYATETEMGLPHERLFTIACTIL-QYREIGKGKSKKI 316 Query: 211 AEQVAAAEVLKRE 223 A++ AA ++ R Sbjct: 317 AKRSAAHKMWSRL 329 >gi|301611383|ref|XP_002935222.1| PREDICTED: double-stranded RNA-specific editase B2-like [Xenopus (Silurana) tropicalis] Length = 731 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y+ ++GP H P F+V VE++GL +G +K+ A+ AA Sbjct: 112 PKNALVQL--HELKPDLQYRFVSQTGPVHAPVFSVAVEVNGLT-FEGTGPTKKKAKMRAA 168 Query: 217 AEVLK 221 LK Sbjct: 169 ELALK 173 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 7/79 (8%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQ 202 K + + ++ L E Y + H RF + + + G + Sbjct: 257 KHKMASPAEREKNPVVMLNEL-----RPGLRYVCLSETVEKQHIKRFVMAMRVDGRT-FE 310 Query: 203 GMDCSKRAAEQVAAAEVLK 221 G SK+ A+ AA L+ Sbjct: 311 GSGRSKKLAKAQAAQNALQ 329 >gi|325530262|sp|D2GVP7|STAU1_AILME RecName: Full=Double-stranded RNA-binding protein Staufen homolog 1 gi|281351107|gb|EFB26691.1| hypothetical protein PANDA_000813 [Ailuropoda melanoleuca] Length = 580 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G +K+ A++ Sbjct: 292 MNPISRLAQIQQAKKEKEPEYLLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRN 350 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 351 AAENMLEILG 360 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 198 EIALKRNLP-VNFEVARESGPPHMKSFVTRVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 255 Query: 223 E 223 Sbjct: 256 L 256 >gi|119596076|gb|EAW75670.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_b [Homo sapiens] Length = 317 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ G A+G +K+ A++ A Sbjct: 205 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 263 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 264 AENMLEILG 272 Score = 58.2 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 110 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 167 Query: 223 E 223 Sbjct: 168 L 168 >gi|322795850|gb|EFZ18529.1| hypothetical protein SINV_15805 [Solenopsis invicta] Length = 138 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 13/118 (11%) Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH---- 166 + DV ESL A+YLD G+ + + Y ++ K+ ++E Sbjct: 17 VPKALGDVFESLAGAIYLDSGMSLDAVWSVYYAIMKSEIEQFSTNVPKSPIRELLELEPE 76 Query: 167 -AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 AKFG D R V V++ G +G+ + R A+ AA LK+ Sbjct: 77 TAKFGRP-------EKLADG-RRVRVTVDVFGKGSFKGIGRNYRIAKCTAAKCALKKL 126 >gi|224055781|ref|XP_002298650.1| predicted protein [Populus trichocarpa] gi|222845908|gb|EEE83455.1| predicted protein [Populus trichocarpa] Length = 357 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE AH P Y RSGP H P FT VE++G+ G +K+ AE+ A Sbjct: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPVFTCTVELAGMN-FTGEPAKTKKQAEKNA 145 Query: 216 AAE---VLKR 222 A LKR Sbjct: 146 AIAAWSALKR 155 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212 K +LQE A P Y R GPDH PRF V +G S R AE Sbjct: 2 FKNQLQELAQRSCFNLPSYACI-REGPDHAPRFKASVNFNGEIFES---PSYCTTLRQAE 57 Query: 213 QVAAAEVLK 221 AA L Sbjct: 58 HAAAEVALN 66 >gi|194382068|dbj|BAG58789.1| unnamed protein product [Homo sapiens] Length = 200 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 6 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 64 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 65 KQAKRNAAEKFLAK 78 >gi|149022335|gb|EDL79229.1| protein kinase, interferon inducible double stranded RNA dependent activator, isoform CRA_a [Rattus norvegicus] Length = 230 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G SK Sbjct: 36 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 94 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 95 KQAKRNAAEKFLAK 108 >gi|291222217|ref|XP_002731114.1| PREDICTED: Double-stranded RNA-binding protein Staufen homolog 2-like [Saccoglossus kowalevskii] Length = 668 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%) Query: 158 KTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT L E A P+YK+ SGP H F V + ++ S + A+ Sbjct: 74 KTPMCLLNELA-RYNKTQPQYKLQDESGPAHQKTFNVSLTLNNQVY-DASGSSIKKAQHA 131 Query: 215 AAAEVLKREGI 225 AA L++ G+ Sbjct: 132 AAEIALQKCGL 142 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 1/72 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + + L + AK P + + G F + V I G G+ +K+ A+ Sbjct: 379 LGMNPVSRLVQIQQAKKEKEPVFTLLQERGQPRKREFIMQVTI-GSNQCTGIGPNKKMAK 437 Query: 213 QVAAAEVLKREG 224 + AA +L+ G Sbjct: 438 RAAAEAMLQLLG 449 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E AH + ++V SGP H F I G A+ K+ +++ AAA+VL++ Sbjct: 287 ESAHRRNLP-ISFEVINESGPPHMKTFITRCTI-GEYSAEAEGNGKKVSKKRAAAKVLEQ 344 Query: 223 EGIW 226 + Sbjct: 345 LKVL 348 >gi|91091212|ref|XP_966668.1| PREDICTED: similar to tar RNA binding protein [Tribolium castaneum] gi|270013108|gb|EFA09556.1| hypothetical protein TcasGA2_TC011666 [Tribolium castaneum] Length = 384 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE ++ P Y++ G H+ +FT+ ++ G SK+ A+++AA ++ Sbjct: 172 LQEMCMSRRWPPPSYEMEHEEGLPHERQFTIACQVL-KFKEVGTGKSKKLAKRMAAHKMW 230 Query: 221 KRE 223 + Sbjct: 231 QAL 233 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE ++ G TP+Y++ G H+P F V I+ A G S Sbjct: 66 PVSVLQELL-SRRGATPKYELVQIEGAIHEPIFRYRVFINNDLVATGTGRS 115 >gi|159163148|pdb|1UHZ|A Chain A, Solution Structure Of Dsrna Binding Domain In Staufen Homolog 2 Length = 89 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + L + A+ P+Y + G F + V++ G A G +K+ A++ AA Sbjct: 8 PISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKNAA 66 Query: 217 AEVLKREG 224 +L + G Sbjct: 67 EAMLLQLG 74 >gi|151553859|gb|AAI49062.1| STAU1 protein [Bos taurus] Length = 531 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G +K+ A++ Sbjct: 239 MNPISRLAQIQQAKKEKEPEYLLLAERGLPRRREFVMQVKV-GNHTAEGSGTNKKVAKRN 297 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 298 AAENMLEILG 307 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 145 EIALKRNLP-VNFEVARESGPPHMKSFVTRVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 202 Query: 223 E 223 Sbjct: 203 L 203 >gi|196007066|ref|XP_002113399.1| predicted protein [Trichoplax adhaerens] gi|190583803|gb|EDV23873.1| predicted protein [Trichoplax adhaerens] Length = 1440 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 18/148 (12%) Query: 8 TLEKRIGYAFANRSLLEKAL-----THSSISHSYQESYER-LEFLGDRILGLLISTLLFN 61 ++K + Y F + SLL AL +SI + ++ LE +GD L ++ L+ Sbjct: 28 EIQKNLKYDFKDSSLLLTALGKDNKLDTSIGLPGRYGNQQILEMIGDAWLRFVVLYKLYE 87 Query: 62 --HFDSAKEGELSVRFNSLVSAET-CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 + LVS +T ++ + L L IR + A+ Sbjct: 88 MKEHTDGSAKSFNDATKWLVSNDTVLPEIGKRLGLEKCIR--------NITDKKKYLANY 139 Query: 119 VESLIAALYL-DGGIEVAGTFVDKYWKQ 145 E+++ A + D + + VD+ W Sbjct: 140 TEAILGAAVIDDRNLHRSFQVVDRLWSP 167 >gi|156373860|ref|XP_001629528.1| predicted protein [Nematostella vectensis] gi|156216530|gb|EDO37465.1| predicted protein [Nematostella vectensis] Length = 949 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 8/73 (10%) Query: 155 RDAKTELQEWAHAKFGVTPEYKV-TFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAE 212 + K LQE+A + P Y V T SG F V G+ + S K+AAE Sbjct: 139 KSYKNILQEFAQGSAKLLPSYTVDTTNSG------FIAEVNFEGVRYKSKIAHSTKKAAE 192 Query: 213 QVAAAEVLKREGI 225 Q AA L+ G+ Sbjct: 193 QNAAESALQALGL 205 Score = 55.9 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTF-RSGPD-HDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 K+ LQE+ P Y+ + G + F V G G ++AAEQ Sbjct: 20 FKSLLQEYCQKMKIDYPSYRTSQCDDGTSKYLGHFVSNVLAVGQNFTGGYCSKRKAAEQD 79 Query: 215 AAAEVLKR 222 AA + LK Sbjct: 80 AAKQALKN 87 Score = 51.6 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 7/82 (8%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 Q L S K+ LQE + P Y T+ G VV+ G + G Sbjct: 238 DQLYLSSPAINISYKSYLQEHVVQRGWRGPSYMTTYHQGGA-----QTVVQFCGKSL-TG 291 Query: 204 M-DCSKRAAEQVAAAEVLKREG 224 +K+ +EQ+AA E L G Sbjct: 292 KPASTKKLSEQLAAREALVNLG 313 >gi|125564316|gb|EAZ09696.1| hypothetical protein OsI_31979 [Oryza sativa Indica Group] Length = 357 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 8/73 (10%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAE 212 K +LQE A P Y T R GPDH PRF V +G S R AE Sbjct: 2 YKNQLQELAQRSCFSLPSYVCT-REGPDHAPRFKATVTFNGETF---DGPSNCTTLRQAE 57 Query: 213 QVAAAEVLKREGI 225 AA L R + Sbjct: 58 HAAAEVALARLSL 70 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y RSGP H P F+ VE++G++ A +K+ AE+ AA Sbjct: 88 YKNLLQETAHRAGLKLPVYTTV-RSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAA 146 Query: 217 AEV---LKRE 223 LK+ Sbjct: 147 MAAWSSLKQM 156 >gi|19072786|gb|AAL84638.1|AF484524_1 endoribonuclease Dicer [Mus musculus x Mus spretus] Length = 1539 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1277 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYHDAHEGRLSYMRSKK 1334 Query: 79 VSAETCSQVARELDLASFIRVS 100 VS ++ ++ L S + VS Sbjct: 1335 VSNCNLYRLGKKKGLPSRMVVS 1356 >gi|255542426|ref|XP_002512276.1| hypothetical protein RCOM_1429110 [Ricinus communis] gi|223548237|gb|EEF49728.1| hypothetical protein RCOM_1429110 [Ricinus communis] Length = 568 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 6/71 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE AH P Y RSGP H P F+ VE++G++ G +K+ A++ A Sbjct: 88 YKNLLQETAHRAGLKLPVYTTV-RSGPGHVPVFSCTVELAGMS-FTGEPARTKKQAQKNA 145 Query: 216 AAE---VLKRE 223 A LKR Sbjct: 146 AMAAWSALKRL 156 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVA 215 K +LQE A P Y R GPDH PRF V +G + R AE A Sbjct: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKATVNFNGETFESPAFCSTLRQAEHAA 60 Query: 216 AAEVLK 221 A L Sbjct: 61 AEVALN 66 >gi|327269765|ref|XP_003219663.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2-like [Anolis carolinensis] Length = 721 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ PEY + G F + V++ G+ +K+ A++ Sbjct: 419 MNPISRLAQIQQARREKEPEYLLLSEKGIPRRREFVMQVKVGNY-ITTGIGPNKKIAKRN 477 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 478 AAEVMLLQLG 487 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 11/63 (17%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 + LQ P YK GP H FTV + + + S + A AA Sbjct: 137 SRLQ----------PVYKFLNEQGPAHAKTFTVQLTLGDQTW-EAEGSSIKKAHHSAARR 185 Query: 219 VLK 221 L Sbjct: 186 ALN 188 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++VT SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 327 EIALKRNMP-VSFEVTKESGPPHMKSFVTHVSV-GEFSAEGEGNSKKLSKKRAAIAVLQE 384 Query: 223 E 223 Sbjct: 385 L 385 Score = 38.5 bits (89), Expect = 0.70, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V + + G +++AA AA + L+ Sbjct: 257 KTFHVQLTVGDHEFF-GEGRTRQAARHNAAMKALQ 290 >gi|50511725|gb|AAT77415.1| dsRNA-binding protein LH [Brassica rapa subsp. chinensis] Length = 274 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214 K+ LQE+A TP Y+ GP H P V ++ + G +++AAEQ Sbjct: 16 FKSRLQEYAQRYKLPTPLYETIKE-GPSHKPLIQSTVIVNDVRYDSLPGF-FNRKAAEQS 73 Query: 215 AAAEVLKRE 223 AA L+ Sbjct: 74 AAEVALQEL 82 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 25/63 (39%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y+ P+FT VEI G+ +K+ AE A Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGR 162 Query: 218 EVL 220 L Sbjct: 163 TAL 165 >gi|327357524|gb|EGE86381.1| 60S ribosomal protein L3 [Ajellomyces dermatitidis ATCC 18188] Length = 394 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 86/280 (30%), Gaps = 60/280 (21%) Query: 1 MSALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 +++ + S + R+ L L + L S + Q + + L LG +L S Sbjct: 80 LNSAKLSAIHARLSL-PQRLPLQTLARTLVDESADPTPQFNNKSLSILGGDLLTYYTSEY 138 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA--------------SFIRV----- 99 L + + L S + A+ + + RE L F R+ Sbjct: 139 LISTYPRLPVKVLWAAMYSYIGAKPLAAMTREWGLEFAAEPGPEVDPGLLQFKRLPPDTV 198 Query: 100 ------SSDLRKDVCSFMTS-----IQADVV------------------------ESLIA 124 + LR+D S I D +++ Sbjct: 199 VETNSNGTFLRRDGGVSKRSTSARIIYGDAFGESALPYPVHHEGVTPNRACANFVRAIVG 258 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL G A F +++ R L R +L + + P K+ +G Sbjct: 259 AVYLHAGRPAAKQFYKEHFTSRHLDMASLFSFRQPTRDLSKLCRREGFEDPVAKILSETG 318 Query: 183 P-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + P F V + +G S A AAA LK Sbjct: 319 RLSNRPVFNVGIFSGPDKLGEGAGGSLSEARFRAAASALK 358 >gi|119474301|ref|XP_001259026.1| RNAse III, putative [Neosartorya fischeri NRRL 181] gi|119407179|gb|EAW17129.1| RNAse III, putative [Neosartorya fischeri NRRL 181] Length = 155 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 15/133 (11%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH-------SYQESYERLEFLGDRILGLLISTLLFN 61 +E I Y F NR++L +AL S + + L +GD +L L++ + Sbjct: 15 VEDIIHYDFTNRAILYEAL--RSAGALALTGRAHRSDGNKDLAQIGDAVLRLILVMDGYE 72 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 A G ++ +S+ S +Q + L + I ++ S + A VE+ Sbjct: 73 A--KASRGYINQIVSSMASNPHLAQTGSKAGLENLILINP----SQASVSPGVMAQTVEA 126 Query: 122 LIAALYLDGGIEV 134 ++ A+YLD ++V Sbjct: 127 ILGAVYLDSEMDV 139 >gi|255644888|gb|ACU22944.1| unknown [Glycine max] Length = 401 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 6/71 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE A P+Y TFRSG H P FT VE++G+ G +K+ AE+ A Sbjct: 88 YKNLLQEIAQRVGAPLPQY-FTFRSGLGHLPVFTGTVELAGI-MFTGEPAKNKKQAEKNA 145 Query: 216 AAEV---LKRE 223 A LK+ Sbjct: 146 AMAAWSSLKQL 156 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 10/70 (14%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-----PAQGMDCSKRAA 211 K +LQE A P Y R GPDH PRF V +G + R A Sbjct: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYC----STLRQA 56 Query: 212 EQVAAAEVLK 221 E AA L Sbjct: 57 EHSAAEVALN 66 >gi|74136125|ref|NP_001027924.1| adenosine deaminase ADAR2-a variant [Takifugu rubripes] gi|22506831|gb|AAM97655.1| adenosine deaminase ADAR2-a variant [Takifugu rubripes] Length = 694 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 69 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMSVEVNGQ-LFEGSGPTKKKAKLNAA 125 Query: 217 AEVLK 221 + L+ Sbjct: 126 EKALR 130 Score = 38.5 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 40/150 (26%), Gaps = 15/150 (10%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +A E +++ V + S A D + + + A Sbjct: 134 QFPNASEAHMAMGRTLSVHTDFTSDQA---DFPDMLF--NAFETSTPVDDSFYLASNSNG 188 Query: 122 LIAALYLDGGI--EVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +L ++ + FV S ++ L E +Y Sbjct: 189 SFCSLGIEYPLLPSPVPNFVQAPLPPAPSTYISPTSGKNPVMILNEL-----RPGLKYDF 243 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SG H F + V + QG + Sbjct: 244 VSESGESHAKNFVMSVMVDAQN-FQGSGRN 272 >gi|7798624|gb|AAF69766.1| double-stranded RNA adenosine deaminase RED1A [Takifugu rubripes] Length = 692 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 67 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMSVEVNGQ-LFEGSGPTKKKAKLNAA 123 Query: 217 AEVLK 221 + L+ Sbjct: 124 EKALR 128 Score = 38.5 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 40/150 (26%), Gaps = 15/150 (10%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +A E +++ V + S A D + + + A Sbjct: 132 QFPNASEAHMAMGRTLSVHTDFTSDQA---DFPDMLF--NAFETSTPVDDSFYLASNSNG 186 Query: 122 LIAALYLDGGI--EVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +L ++ + FV S ++ L E +Y Sbjct: 187 SFCSLGIEYPLLPSPVPNFVQAPLPPAPSTYISPTSGKNPVMILNEL-----RPGLKYDF 241 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SG H F + V + QG + Sbjct: 242 VSESGESHAKNFVMSVMVDAQN-FQGSGRN 270 >gi|47226805|emb|CAG06647.1| unnamed protein product [Tetraodon nigroviridis] Length = 678 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 67 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMSVEVNGQ-LFEGSGPTKKKAKLNAA 123 Query: 217 AEVLK 221 + L+ Sbjct: 124 EKALR 128 Score = 36.6 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 1/40 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + +Y SG H F + V + QG + Sbjct: 232 ELRPGLKYDFVSESGESHAKNFVMSVMVDTQN-FQGSGRN 270 >gi|170037804|ref|XP_001846745.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167881149|gb|EDS44532.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 896 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DC 206 +K + + L E+A + P Y + SGP H F V ++GL + + Sbjct: 815 VKINVDGKHPVSILGEYASKRKWNPPRYDLVHESGPGHAKNFVFKVIVNGLEYQPAISNN 874 Query: 207 SKRAAEQVAAAEVLKREGIW 226 +K+ A+ AA L++ GI Sbjct: 875 TKKDAKATAARFCLQQLGIL 894 >gi|156717296|ref|NP_001096190.1| adenosine deaminase, RNA-specific, B1 [Xenopus (Silurana) tropicalis] gi|134024214|gb|AAI36175.1| LOC100124739 protein [Xenopus (Silurana) tropicalis] Length = 719 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 50/160 (31%), Gaps = 12/160 (7%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV-E 120 F +A E L++ V+ + S A D + + K S E Sbjct: 164 QFPNASEAHLAMGRTLSVNTDFTSDQA---DFPDTLF--NGFEKPEQSEHVFFLGSNGNE 218 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 S +A + + F+ +L ++ L E +Y Sbjct: 219 SFNSANDYSLSMIGSSNFIQSPLPTPSLFPPASGKNPVMILNEL-----RPGLKYDFVSE 273 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 SG H F + V + +G +K+ A+ AA L Sbjct: 274 SGESHAKNFVMSVTVDNET-FEGSGRNKKLAKARAAQSAL 312 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 99 PKNALMQL--NEIKPGLQYKLISQTGPVHAPVFIMTVEVNGQV-FEGSGPTKKKAKLNAA 155 Query: 217 AEVLK 221 + L+ Sbjct: 156 EKALR 160 >gi|326921558|ref|XP_003207024.1| PREDICTED: double-stranded RNA-specific editase B2-like [Meleagris gallopavo] Length = 720 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 101 PKNALVQL--HELKPGLQYKMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 157 Query: 217 AEVLK 221 LK Sbjct: 158 ELALK 162 Score = 36.2 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 7/60 (11%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKR 209 + ++ L E Y + H F + V + G +G SK+ Sbjct: 253 AESEKNPVVLLNEL-----RSGLRYVCLSETVEKQHIKSFVMAVRVDGRT-FEGSGRSKK 306 >gi|297460681|ref|XP_591710.4| PREDICTED: staufen, RNA binding protein, homolog 1 (Drosophila) [Bos taurus] gi|297482107|ref|XP_002692543.1| PREDICTED: staufen, RNA binding protein, homolog 1 (Drosophila) [Bos taurus] gi|296480970|gb|DAA23085.1| staufen, RNA binding protein, homolog 1 [Bos taurus] Length = 601 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G +K+ A++ Sbjct: 309 MNPISRLAQIQQAKKEKEPEYLLLAERGLPRRREFVMQVKV-GNHTAEGSGTNKKVAKRN 367 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 368 AAENMLEILG 377 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + PEYK+ GP H FTV + + + S + A+ AAA+ L+ Sbjct: 20 NKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIKKAQHTAAAKALE 71 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 217 EIALKRNLP-VNFEVARESGPPHMKSFVTRVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 274 Query: 223 E 223 Sbjct: 275 L 275 >gi|119571203|gb|EAW50818.1| hCG201528 [Homo sapiens] Length = 288 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 LQE A PEY ++ GP H +T + + G SK+ A++ AA + Sbjct: 105 SLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASKKQAKRNAAEKF 163 Query: 220 LKR 222 L + Sbjct: 164 LAK 166 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ H P FT V + + G SK+ A+ Sbjct: 8 KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 65 Query: 215 AAAEVLK 221 AA + Sbjct: 66 AAEAAIN 72 >gi|307205142|gb|EFN83585.1| Double-stranded RNA-specific editase Adar [Harpegnathos saltator] Length = 661 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV ++GP H P FT+ V+I G +G +K+ A+ AA L+ Sbjct: 91 YKVVGQTGPTHAPIFTIAVQIDGQTY-EGKGRTKKMAKHAAAELALRN 137 >gi|326670793|ref|XP_687110.5| PREDICTED: double-stranded RNA-specific editase 1-like [Danio rerio] Length = 750 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 127 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAA 183 Query: 217 AEVLK 221 + L+ Sbjct: 184 EKALR 188 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 1/40 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + +Y+ SG H F + V + +G + Sbjct: 291 ELRPGLKYEFVSESGESHAKNFVMSVTVDSQ-MFEGSGRN 329 >gi|224044691|ref|XP_002193461.1| PREDICTED: similar to adenosine deaminase, RNA-specific, B2 [Taeniopygia guttata] Length = 744 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 126 PKNALVQL--HELKPGLQYKMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 182 Query: 217 AEVLK 221 LK Sbjct: 183 ELALK 187 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 7/66 (10%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQG 203 + + + ++ L E Y + H F + V + G +G Sbjct: 271 KHRMAKAESEKNPVVLLNEL-----RSGLRYVCLSETVEKQHIKSFVMAVRVDGRT-FEG 324 Query: 204 MDCSKR 209 SK+ Sbjct: 325 SGRSKK 330 >gi|327271788|ref|XP_003220669.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1-like isoform 2 [Anolis carolinensis] Length = 693 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G+ A+GM +K+ A++ Sbjct: 379 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKV-GMHTAEGMGTNKKVAKRN 437 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 438 AAENMLELLG 447 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++VT SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 285 EIALKRNLP-VNFEVTRESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAIAVLEE 342 Query: 223 E 223 Sbjct: 343 L 343 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + PEYK+ GP H FTV + + + S Sbjct: 92 NKIQPEYKLLSEQGPAHSKVFTVQLTLGDQHW-EAEGTS 129 >gi|327271786|ref|XP_003220668.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1-like isoform 1 [Anolis carolinensis] Length = 695 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G+ A+GM +K+ A++ Sbjct: 381 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKV-GMHTAEGMGTNKKVAKRN 439 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 440 AAENMLELLG 449 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 163 EWAHAKFGVT-----PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 E A + P +VT SGP H F V + G +G SK+ +++ AA Sbjct: 281 EIALKRNLPVNFEFFPLKQVTRESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAI 339 Query: 218 EVLKRE 223 VL+ Sbjct: 340 AVLEEL 345 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + PEYK+ GP H FTV + + + S Sbjct: 88 NKIQPEYKLLSEQGPAHSKVFTVQLTLGDQHW-EAEGTS 125 >gi|215764986|dbj|BAG86683.1| unnamed protein product [Oryza sativa Japonica Group] Length = 357 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 8/73 (10%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAE 212 K +LQE A P Y T R GPDH PRF V +G S R AE Sbjct: 2 YKNQLQELAQRSCFSLPSYVCT-REGPDHAPRFKATVTFNGETF---DGPSNCTTLRQAE 57 Query: 213 QVAAAEVLKREGI 225 AA L R + Sbjct: 58 HAAAEVALARLSL 70 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y RSGP H P F+ VE++G++ A +K+ AE+ AA Sbjct: 88 YKNLLQETAHRAGLKLPVYTTV-RSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAA 146 Query: 217 AEV---LKRE 223 LK+ Sbjct: 147 MAAWSSLKQM 156 >gi|42820678|emb|CAF31991.1| possible ribonuclease III [Aspergillus fumigatus] Length = 394 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 53/286 (18%), Positives = 82/286 (28%), Gaps = 74/286 (25%) Query: 2 SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + + + L R+ Y + L L +AL +S + + E L LG +L S L Sbjct: 81 ESAKLAALHARL-YLPSRLPLETLARALVDASADPNPDFNNESLATLGHDLLTNYTSEHL 139 Query: 60 FNHFDSAKEGELSVRFNSL-----VSAETCSQVARELDLASFIRVSSD------------ 102 + L+V F ++ V + L F RVS Sbjct: 140 ICTYPRLP---LTVIFAAMYAEWGVEMAVAPGGEVDPGLLQFRRVSPGTDLNAEPVTGTA 196 Query: 103 -LRKDVCSFMTSI---------------------------------------QADVVESL 122 S+ SI A V ++ Sbjct: 197 RPNDHRKSWRKSITSRVVYDNEFGDPVKEVADSAAQAVSETHGAQGVTAEQASATFVRAV 256 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKFGVTPEYK 176 + A+YL G A F +++ R L + RD L + P K Sbjct: 257 MGAIYLHAGRPAAKRFFEQHILSRHLNISELFNFSQPARD----LTRLCARENFERPVAK 312 Query: 177 VTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + +G P F V + +G S A AA LK Sbjct: 313 IISETGRKSRHPVFVVGIYSGQDKLGEGAGASLMEARSRAAVAALK 358 >gi|327274458|ref|XP_003221994.1| PREDICTED: double-stranded RNA-specific editase B2-like [Anolis carolinensis] Length = 714 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 99 PKNALVQL--HELKPGLQYKMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 155 Query: 217 AEVLK 221 LK Sbjct: 156 ELALK 160 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 7/66 (10%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQG 203 ++ ++ + ++ L E Y + H F + V + G +G Sbjct: 241 KQNKRTAESEKNPVVLLNEL-----RSGLRYVCLSETVEKQHIKSFVMAVRVDGRT-FEG 294 Query: 204 MDCSKR 209 SK+ Sbjct: 295 SGRSKK 300 >gi|148230009|ref|NP_001088561.1| adenosine deaminase, RNA-specific, B1 [Xenopus laevis] gi|54648473|gb|AAH84960.1| LOC495438 protein [Xenopus laevis] Length = 699 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYKLISQTGPVHAPVFIMTVEVNGQG-FEGSGPTKKKAKLNAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 12/160 (7%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV-E 120 F +A E L++ V+ + S A D + + K S E Sbjct: 144 QFPNASEAHLAMGRTLSVNTDFTSDQA---DFPDTLF--NGFEKPEHSEHVFFLGSNGNE 198 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 S A + + F+ +L ++ L E +Y Sbjct: 199 SFNPASDYSLSMIGSSNFIQSPLPTPSLFPPASGKNPVMILNEL-----RPGLKYDFVSE 253 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 SG H F + V + +G +K+ A+ AA L Sbjct: 254 SGESHAKNFVMSVTVDNET-FEGSGRNKKLAKARAAQSAL 292 >gi|302306614|ref|NP_983011.2| ABR065Wp [Ashbya gossypii ATCC 10895] gi|299788601|gb|AAS50835.2| ABR065Wp [Ashbya gossypii ATCC 10895] Length = 344 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 68/223 (30%), Gaps = 33/223 (14%) Query: 33 SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD 92 + + ++ L LG +L L L + L+ ++ + +Q+ R Sbjct: 101 AQNKEQHNRSLNILGKNLLTLHAMRRLVERYPRLPVPVLNAAVDAYIGLPVLAQIGRGWG 160 Query: 93 LA--------SFIRVSSDLRKDVC-SFMTSIQAD--------------------VVESLI 123 + F+R F + + V S++ Sbjct: 161 IESERETVMERFLRQEPSHMTLGRLRFFNNTLKEIDGIRILSSSNMSESASMAMAVRSIV 220 Query: 124 AALYLD-GGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180 AL+ +++ F+D + R L + EL + P K+ Sbjct: 221 GALWASTQDLQLVERFLDAHVMSRKLPITQLFMFEQPTRELARLCSREGLERPVSKLIAE 280 Query: 181 SGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +G P F V V +G S + A+ AA + L + Sbjct: 281 TGRLSKAPVFVVGVFSGEEKLGEGFGSSLKEAKARAATDALMK 323 >gi|121711916|ref|XP_001273573.1| RNAse III, putative [Aspergillus clavatus NRRL 1] gi|119401725|gb|EAW12147.1| RNAse III, putative [Aspergillus clavatus NRRL 1] Length = 160 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 64/134 (47%), Gaps = 9/134 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLF 60 + + +E+ IGY FA+R++L++AL + + + L +GD +L L++ +L Sbjct: 11 KATGVEETIGYKFADRAVLKEALLAPGSVPLAITTERTGNKDLAQIGDAVLRLIL--ILD 68 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + A +++ + +VS + ++ L I + + V + A+ VE Sbjct: 69 GYIAKADRAKINDVVSPMVSNPNLAAKGFKVGLEQHILANPSQQGLVSHG---VMANAVE 125 Query: 121 SLIAALYLDGGIEV 134 +++ A+YLD + Sbjct: 126 AILGAVYLDSNLNT 139 >gi|326931869|ref|XP_003212046.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1-like isoform 2 [Meleagris gallopavo] Length = 684 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G+ A+GM +K+ A++ Sbjct: 369 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKV-GVHTAEGMGTNKKVAKRN 427 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 428 AAENMLEILG 437 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++VT SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 275 EIALKRNLP-VNFEVTKESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAIAVLEE 332 Query: 223 E 223 Sbjct: 333 L 333 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + PEYK+ GP H FTV + + + S Sbjct: 88 NKIQPEYKLLSEQGPAHSKVFTVQLTLGDQHW-EAEGTS 125 >gi|326931867|ref|XP_003212045.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1-like isoform 1 [Meleagris gallopavo] Length = 712 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G+ A+GM +K+ A++ Sbjct: 381 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKV-GVHTAEGMGTNKKVAKRN 439 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 440 AAENMLEILG 449 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 163 EWAHAKFGVT-----PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 E A + P +VT SGP H F V + G +G SK+ +++ AA Sbjct: 281 EIALKRNLPVNFEFFPLKQVTKESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAI 339 Query: 218 EVLKRE 223 VL+ Sbjct: 340 AVLEEL 345 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + PEYK+ GP H FTV + + + S Sbjct: 88 NKIQPEYKLLSEQGPAHSKVFTVQLTLGDQHW-EAEGTS 125 >gi|61098218|ref|NP_001012849.1| double-stranded RNA-binding protein Staufen homolog 1 [Gallus gallus] gi|53136660|emb|CAG32659.1| hypothetical protein RCJMB04_32c1 [Gallus gallus] Length = 712 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G+ A+GM +K+ A++ Sbjct: 381 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKV-GVHTAEGMGTNKKVAKRN 439 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 440 AAENMLEILG 449 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 163 EWAHAKFGVT-----PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 E A + P +VT SGP H F V + G +G SK+ +++ AA Sbjct: 281 EIALKRNLPVNFEFFPLKQVTKESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAI 339 Query: 218 EVLKRE 223 VL+ Sbjct: 340 AVLEEL 345 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + PEYK+ GP H FTV + + + S Sbjct: 88 NKIQPEYKLLSEQGPAHSKVFTVQLTLGDQHW-EAEGTS 125 >gi|161484666|ref|NP_571685.2| adenosine deaminase, RNA-specific, B1 [Danio rerio] gi|148726053|emb|CAN88439.1| adenosine deaminase, RNA-specific, B1 [Danio rerio] Length = 720 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 95 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAA 151 Query: 217 AEVLK 221 + L+ Sbjct: 152 EKALR 156 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + +Y+ SG H F + V + QG + Sbjct: 261 ELRPGLKYEFVAESGESHAKNFIMSVTVD-TQKFQGSGRN 299 >gi|149639039|ref|XP_001507858.1| PREDICTED: similar to adenosine deaminase [Ornithorhynchus anatinus] Length = 699 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 5/80 (6%) Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 K+R G K L + + +YK+ ++GP H P F + VE++G A Sbjct: 65 RIKKRKKTPGPVL--PKNALMQL--NEIKPGLQYKLLSQTGPVHAPMFVMAVEVNGQA-F 119 Query: 202 QGMDCSKRAAEQVAAAEVLK 221 +G +K+ A+ AA + L+ Sbjct: 120 EGTGPTKKKAKLHAAEKALR 139 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 13/161 (8%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +A E L++ V+ + S A D + + + + + Sbjct: 143 QFPNASEAHLAMGRTLSVNTDFTSDQA---DFPDTLF--NGFETPNQTDSSFYLGSNGDG 197 Query: 122 LIAA--LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++ Y VA + + + ++ L E +Y+ Sbjct: 198 SFSSSGDYNLSSATVASSLMQSPLPIPSPYPSSGGKNPVMILNEL-----RPGLKYEFLS 252 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 SG H F + V + G +G +K+ A+ AA L Sbjct: 253 ESGESHAKNFVMAVAVDGQN-FEGSGRNKKLAKARAAQSAL 292 >gi|327270557|ref|XP_003220056.1| PREDICTED: double-stranded RNA-specific editase 1-like [Anolis carolinensis] Length = 698 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G A +G +K+ A+ AA Sbjct: 78 PKNALMQL--NEIKPGLQYKLISQTGPVHAPVFVMAVEVNGQA-FEGSGPTKKKAKLHAA 134 Query: 217 AEVLK 221 + L+ Sbjct: 135 EKALR 139 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 18/163 (11%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +A E L++ V+ + S A D + + + + Sbjct: 143 QFPNASEAHLAMGRTLSVNTDFTSDQA---DFPDTLF--NGFENPAHPDHSFYLDSNGDG 197 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKV 177 ++ D G+ AG V + + ++ L E +Y Sbjct: 198 SFSST-ADYGLSSAG--VSSLSQSSLPAPSPYPSTSGKNPVMILNEL-----RPGLKYDF 249 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 SG H F + V + G +G +K+ A+ AA L Sbjct: 250 LSESGESHAKNFVMAVSVDGHT-FEGSGRNKKLAKARAAQSAL 291 >gi|15593021|gb|AAL02181.1|AF403112_1 adenosine deaminase [Danio rerio] gi|15593015|gb|AAL02179.1| adenosine deaminase [Danio rerio] Length = 720 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 95 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAA 151 Query: 217 AEVLK 221 + L+ Sbjct: 152 EKALR 156 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + +Y+ SG H F + V + QG + Sbjct: 261 ELRPGLKYEFVAESGESHAKNFIMSVTVD-TQKFQGSGRN 299 >gi|296200670|ref|XP_002747678.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 [Callithrix jacchus] Length = 577 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ G A+G +K+ A++ A Sbjct: 286 NPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 344 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 345 AENMLEILG 353 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 191 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 248 Query: 223 E 223 Sbjct: 249 L 249 >gi|212532231|ref|XP_002146272.1| 60S ribosomal protein L3 [Penicillium marneffei ATCC 18224] gi|210071636|gb|EEA25725.1| 60S ribosomal protein L3 [Penicillium marneffei ATCC 18224] Length = 404 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 70/270 (25%), Gaps = 75/270 (27%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L + L +S + L LG +L + + + + + + Sbjct: 102 LARTLRDASADPHPSFNNASLALLGHDLLANYTTEHIICTYPRLPMTVIYAAMYAYIGPR 161 Query: 83 TCSQVARELD--------------LASFIRVSSDLR---------KDVCSFMTSIQADVV 119 T + +A E L F RV + + SI + VV Sbjct: 162 TLAAIAGEWGVEFAAVPGPEVDPGLLQFKRVQPGTEIVQDAKKTTRPNTHWRKSIASSVV 221 Query: 120 E-----------------------------------------SLIAALYLDGGIEVAGTF 138 +L+ +YL G A F Sbjct: 222 HGDIFGDPDLRTKNPKYVESRLPDIDSIPGVTAEKAASTFVQALVGGIYLHAGRPAAKRF 281 Query: 139 VDKYWKQRALKSGKFR------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH-DPRFTV 191 ++ R L K RD L H + P K+ +G +P F V Sbjct: 282 FKEHIISRHLDMTKLFSFTQPARD----LANLCHRENIEPPVAKIISETGRHSRNPVFNV 337 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V +G S A AA LK Sbjct: 338 GVFSGKDKLGEGSGASLIEARTRAAVAALK 367 >gi|148726052|emb|CAN88438.1| adenosine deaminase, RNA-specific, B1 [Danio rerio] Length = 689 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 64 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAA 120 Query: 217 AEVLK 221 + L+ Sbjct: 121 EKALR 125 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + +Y+ SG H F + V + QG + Sbjct: 230 ELRPGLKYEFVAESGESHAKNFIMSVTVD-TQKFQGSGRN 268 >gi|126341352|ref|XP_001373773.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 727 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F V VE++G +G +K+ A+ AA Sbjct: 108 PKNALVQL--HELKPGLQYKMVSQTGPVHAPVFAVAVEVNGFT-FEGTGPTKKKAKMRAA 164 Query: 217 AEVLK 221 LK Sbjct: 165 ELALK 169 Score = 38.5 bits (89), Expect = 0.70, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 7/60 (11%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKR 209 G+ ++ L E Y + H F + V + G +G SK+ Sbjct: 260 GEREKNPVVVLNEL-----RSGLRYICLSETVEKQHAKSFVMAVRVDGRT-FEGSGRSKK 313 >gi|73992227|ref|XP_534450.2| PREDICTED: similar to Double-stranded RNA-binding protein Staufen homolog isoform 1 [Canis familiaris] Length = 684 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 78/195 (40%), Gaps = 18/195 (9%) Query: 46 LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELD---LASFI-RV 99 LG+++ G N + ++ E++++ N V+ E+ QVARE + SF+ +V Sbjct: 268 LGEQVNGRESEEENLNKSEISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKSFVTKV 327 Query: 100 SSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--- 154 S + + + +++ L + V K++ + + Sbjct: 328 SVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPTVER-VKPRIKKKTKSIVRLQSST 386 Query: 155 -----RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + + L + AK PEY + G F + V++ G A+G +K+ Sbjct: 387 DCGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGAGTNKK 445 Query: 210 AAEQVAAAEVLKREG 224 A++ AA +L+ G Sbjct: 446 VAKRNAAENMLEILG 460 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + PEYK+ GP H FTV + + + S + A+ AAA+ L+ Sbjct: 92 NKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIKKAQHTAAAKALE 143 >gi|47225372|emb|CAG11855.1| unnamed protein product [Tetraodon nigroviridis] Length = 1598 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E++ G E+ +T ++GP HD RF V++ ++ SK+AA Q+ Sbjct: 442 KNPVSVLMEYSQ-HSGNAIEFIMTGQAGPPHDTRFMYRVKVGENLFSEASAPSKKAARQL 500 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 501 AAEEAVKEL 509 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 ++ + L E+A G E+ + +SGP HDPRF + V ++G S Sbjct: 310 KNPVSGLMEYAQ-FLGQNCEFLLLDQSGPSHDPRFRMQVMLNGRLFPVAEASS 361 >gi|218283083|ref|ZP_03489178.1| hypothetical protein EUBIFOR_01764 [Eubacterium biforme DSM 3989] gi|218216152|gb|EEC89690.1| hypothetical protein EUBIFOR_01764 [Eubacterium biforme DSM 3989] Length = 81 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Query: 14 GYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62 GY + N + +A THSS ++ + + ERLEF+GD +L + +T LF + Sbjct: 12 GYKYKNEDIYLEACTHSSYANEHHRQMDDNERLEFMGDSVLQIWSATQLFFN 63 >gi|70986266|ref|XP_748627.1| RNAse III [Aspergillus fumigatus Af293] gi|66846256|gb|EAL86589.1| RNAse III, putative [Aspergillus fumigatus Af293] gi|159128228|gb|EDP53343.1| RNAse III, putative [Aspergillus fumigatus A1163] Length = 150 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 15/138 (10%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-------HSYQESYERLEFLGDRILGLLIS 56 R +E I Y F NRS+L +AL S + + L +GD +L L++ Sbjct: 5 ERADVVEDIIHYDFTNRSILYEAL--RSAGALALTGRAHRSDGNKDLAQVGDAVLQLILV 62 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 + G ++ +S S +QV + L S I ++ S + A Sbjct: 63 MDGYEA--KGSRGYINQIVSSTASNPNLAQVGFKAGLESVILINP----SQASVSPGVMA 116 Query: 117 DVVESLIAALYLDGGIEV 134 VE+++ A+YLD ++V Sbjct: 117 QTVEAILGAVYLDSQMDV 134 >gi|332019072|gb|EGI59604.1| Double-stranded RNA-binding protein Staufen-like protein 2 [Acromyrmex echinatior] Length = 358 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 152 KFRRDAKTELQEWAHAKFGVT--PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + LQE+ + T +Y + + G H FTV V + G +G K+ Sbjct: 120 TVGYNYIGMLQEFCQQRQIPTKDIQYDLIYDEGLPHKKIFTVKVSL-GSLCERGTGQCKK 178 Query: 210 AAEQVAAAEVL 220 +A+Q AA ++L Sbjct: 179 SAKQEAAKKML 189 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Query: 157 AKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 AK+E LQE + K G TP Y ++ +F V + G SK+ A+ Sbjct: 2 AKSEINLLQELS-IKRGFTPIYNF-SEKNINYQKQFICNVACA-KLITHGTGNSKKEAKH 58 Query: 214 VAAAEVL 220 AA +L Sbjct: 59 NAAKNML 65 >gi|290463409|sp|Q91550|ILF3A_XENLA RecName: Full=Interleukin enhancer-binding factor 3-A; AltName: Full=CCAAT box transcription factor subunit; AltName: Full=Double-stranded RNA-binding protein 4F.1; Short=DsRNA-binding protein 4F.1 Length = 897 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K + E + G+ +Y++ +G HD RF + VE+ G+ QG +K+ A+ Sbjct: 518 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGVK-FQGSGSNKKVAK 574 Query: 213 QVAAAEVLKRE 223 AA L++ Sbjct: 575 AYAALSALEKL 585 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ + SK+ A+ A +VL+ G+ T Sbjct: 412 QLKPGLQYKLISQTGPVHAPVFTMSVEVDDKT-FEASGPSKKTAKLHVAVKVLQDMGLPT 470 >gi|10834850|gb|AAG22859.1| CCAAT box transcription factor p122 subunit [Xenopus laevis] Length = 896 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K + E + G+ +Y++ +G HD RF + VE+ G+ QG +K+ A+ Sbjct: 518 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGVK-FQGSGSNKKVAK 574 Query: 213 QVAAAEVLKRE 223 AA L++ Sbjct: 575 AYAALSALEKL 585 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ + SK+ A+ A +VL+ G+ T Sbjct: 412 QLKPGLQYKLISQTGPVHAPVFTMSVEVDDKT-FEASGPSKKTAKLHVAVKVLQDMGLPT 470 >gi|147906306|ref|NP_001083930.1| interleukin enhancer-binding factor 3-A [Xenopus laevis] gi|83405079|gb|AAI10712.1| CBTF122 protein [Xenopus laevis] Length = 902 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K + E + G+ +Y++ +G HD RF + VE+ G+ QG +K+ A+ Sbjct: 518 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGVK-FQGSGSNKKVAK 574 Query: 213 QVAAAEVLKRE 223 AA L++ Sbjct: 575 AYAALSALEKL 585 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ + SK+ A+ A +VL+ G+ T Sbjct: 412 QLKPGLQYKLISQTGPVHAPVFTMSVEVDDKT-FEASGPSKKTAKLHVAVKVLQDMGLPT 470 >gi|92097709|gb|AAI15171.1| Adarb1 protein [Danio rerio] Length = 233 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 95 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAA 151 Query: 217 AEVLK 221 + L+ Sbjct: 152 EKALR 156 >gi|15593018|gb|AAL02180.1|AF403111_1 adenosine deaminase [Danio rerio] gi|15593024|gb|AAL02182.1|AF403113_1 adenosine deaminase [Danio rerio] Length = 689 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 64 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAA 120 Query: 217 AEVLK 221 + L+ Sbjct: 121 EKALR 125 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + +Y+ SG H F + V + QG + Sbjct: 230 ELRPGLKYEFVAESGESHAKNFIMSVTVD-TQKFQGSGRN 268 >gi|63101747|gb|AAH95026.1| Adarb1 protein [Danio rerio] Length = 233 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 95 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAA 151 Query: 217 AEVLK 221 + L+ Sbjct: 152 EKALR 156 >gi|149634773|ref|XP_001511395.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 786 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y++ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 165 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 221 Query: 217 AEVLK 221 L+ Sbjct: 222 ELALR 226 Score = 37.0 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 7/65 (10%) Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGM 204 + S + ++ L E Y + H F + V + G +G Sbjct: 314 KTASSVESEKNPVVLLNEL-----RAGLRYVCLSETVEKQHPKSFVMAVRVDGRT-FEGS 367 Query: 205 DCSKR 209 SK+ Sbjct: 368 GRSKK 372 >gi|297685923|ref|XP_002820521.1| PREDICTED: double-stranded RNA-specific editase B2-like, partial [Pongo abelii] Length = 345 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y+ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 63 PKNALVQL--HELRPGLQYRTVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 119 Query: 217 AEVLK 221 L+ Sbjct: 120 ELALR 124 >gi|296206058|ref|XP_002750047.1| PREDICTED: double-stranded RNA-specific editase B2-like [Callithrix jacchus] Length = 998 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y+ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 382 PKNALVQL--HELRPGLQYRTVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 438 Query: 217 AEVLK 221 L+ Sbjct: 439 ELALR 443 >gi|109088041|ref|XP_001118272.1| PREDICTED: double-stranded RNA-specific editase B2, partial [Macaca mulatta] Length = 504 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y+ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 126 PKNALVQL--HELRPGLQYRTVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 182 Query: 217 AEVLK 221 L+ Sbjct: 183 ELALR 187 >gi|291409985|ref|XP_002721271.1| PREDICTED: staufen [Oryctolagus cuniculus] Length = 862 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G +K+ A++ Sbjct: 574 MNPISRLAQIQQAKKEREPEYLLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRN 632 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 633 AAENMLEILG 642 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 482 EIALKRNLP-VNFEVARESGPPHMRNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 539 Query: 223 E 223 Sbjct: 540 L 540 >gi|15529496|gb|AAL01305.1|AF403114_1 adenosine deaminase [Gallus gallus] gi|15529504|gb|AAL01309.1| adenosine deaminase [Gallus gallus] Length = 524 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 80 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMAVEVNGQV-FEGSGPTKKKAKLHAA 136 Query: 217 AEVLK 221 + L+ Sbjct: 137 EKALR 141 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 15/162 (9%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +A E L++ V+ + S A D + + V S + + Sbjct: 145 QFPNASEAHLAMGRTLSVNTDFTSDQA---DFPDTLF--NGFETPVPSDASFYLGSNGDG 199 Query: 122 LIAALYLDGGIE--VAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + + G+ + + + +L ++ L E +Y+ Sbjct: 200 SFGSS-REYGLSSAAVASSLTQLPLPASLPYPTASGKNPVMILNEL-----RPGLKYEFL 253 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 SG H F + V + G +G +K+ A+ AA L Sbjct: 254 SESGESHAKNFVMAVAVDGQT-FEGSGRNKKLAKARAAQSAL 294 >gi|187950663|gb|AAI37478.1| Adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo sapiens] gi|187954983|gb|AAI40853.1| Adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo sapiens] Length = 739 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y+ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 126 PKNALVQL--HELRPGLQYRTVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 182 Query: 217 AEVLK 221 L+ Sbjct: 183 ELALR 187 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + Y F + V + G +G SK+ A AA L+ Sbjct: 285 RLRAGLRYVCLAEPAERRARSFVMAVSVDGRT-FEGSGRSKKLARGQAAQAALQEL 339 >gi|312095371|ref|XP_003148333.1| hypothetical protein LOAG_12772 [Loa loa] gi|307756502|gb|EFO15736.1| hypothetical protein LOAG_12772 [Loa loa] Length = 465 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + + + L + A+ P++++ G F + V +G+ +K+ A+ Sbjct: 263 HQINPVSRLMQVMQARKQNEPKFQLVAERGQSRYKEFVMEVVCDDGLRCEGIGPNKKLAK 322 Query: 213 QVAAAEVLKREG 224 + AA VL R G Sbjct: 323 RAAAEAVLARIG 334 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLK 221 + + E+ V GP HD + + ++ + A G SK+ A+Q A + +L Sbjct: 158 CALQMRMNVEFLVLKEEGPAHDRHYLLRCKLISAEQIISADGEGSSKKIAKQNACSLMLT 217 Query: 222 RE 223 + Sbjct: 218 KL 219 >gi|255569490|ref|XP_002525712.1| double-stranded RNA binding protein, putative [Ricinus communis] gi|223535012|gb|EEF36695.1| double-stranded RNA binding protein, putative [Ricinus communis] Length = 280 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 K LQE A + P Y G H P F VE+ G G +K+ AE A Sbjct: 7 YKNLLQELAQKEGYGLPSYSTV-TFGESHKPTFASTVEVKGE-FFTGQQTRTKKQAEFNA 64 Query: 216 AA---EVLKR 222 A + LK+ Sbjct: 65 AKVAYKALKQ 74 >gi|15529500|gb|AAL01307.1|AF403116_1 adenosine deaminase [Gallus gallus] gi|15529508|gb|AAL01311.1|AF403120_1 adenosine deaminase [Gallus gallus] Length = 503 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 59 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMAVEVNGQV-FEGSGPTKKKAKLHAA 115 Query: 217 AEVLK 221 + L+ Sbjct: 116 EKALR 120 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 15/162 (9%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +A E L++ V+ + S A D + + V S + + Sbjct: 124 QFPNASEAHLAMGRTLSVNTDFTSDQA---DFPDTLF--NGFETPVPSDASFYLGSNGDG 178 Query: 122 LIAALYLDGGIE--VAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + + G+ + + + +L ++ L E +Y+ Sbjct: 179 SFGSS-REYGLSSAAVASSLTQLPLPASLPYPTASGKNPVMILNEL-----RPGLKYEFL 232 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 SG H F + V + G +G +K+ A+ AA L Sbjct: 233 SESGESHAKNFVMAVAVDGQT-FEGSGRNKKLAKARAAQSAL 273 >gi|8922077|ref|NP_061172.1| double-stranded RNA-specific editase B2 [Homo sapiens] gi|33112436|sp|Q9NS39|RED2_HUMAN RecName: Full=Double-stranded RNA-specific editase B2; AltName: Full=RNA-dependent adenosine deaminase 3; AltName: Full=RNA-editing deaminase 2; AltName: Full=RNA-editing enzyme 2; AltName: Full=dsRNA adenosine deaminase B2 gi|8650031|gb|AAF78094.1| double-stranded RNA specific adenosine deaminase [Homo sapiens] gi|55665370|emb|CAH72171.1| adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo sapiens] gi|55665458|emb|CAH73405.1| adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo sapiens] gi|119606914|gb|EAW86508.1| adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo sapiens] Length = 739 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y+ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 126 PKNALVQL--HELRPGLQYRTVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 182 Query: 217 AEVLK 221 L+ Sbjct: 183 ELALR 187 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + Y F + V + G +G SK+ A AA L+ Sbjct: 285 RLRAGLRYVCLAEPAERRARSFVMAVSVDGRT-FEGSGRSKKLARGQAAQAALQEL 339 >gi|222641889|gb|EEE70021.1| hypothetical protein OsJ_29958 [Oryza sativa Japonica Group] Length = 325 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 8/73 (10%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAE 212 K +LQE A P Y T R GPDH PRF V +G S R AE Sbjct: 2 YKNQLQELAQRSCFSLPSYVCT-REGPDHAPRFKATVTFNGETF---DGPSNCTTLRQAE 57 Query: 213 QVAAAEVLKREGI 225 AA L R + Sbjct: 58 HAAAEVALARLSL 70 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y RSGP H P F+ VE++G++ A +K+ AE+ AA Sbjct: 88 YKNLLQETAHRAGLKLPVYTTV-RSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAA 146 Query: 217 AEV---LKRE 223 LK+ Sbjct: 147 MAAWSSLKQM 156 >gi|73992233|ref|XP_867122.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen homolog isoform 7 [Canis familiaris] Length = 600 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + PEYK+ GP H FTV + + + S + A+ AAA+ L+ Sbjct: 20 NKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIKKAQHTAAAKALE 71 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G +K+ A++ Sbjct: 308 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGAGTNKKVAKRN 366 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 367 AAENMLEILG 376 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + ++ + + +++ E A + ++V SGP H F V + G Sbjct: 194 RRLGEQLDEEENLNKSEISQVFEIALKRNLP-VNFEVARESGPPHMKSFVTKVSV-GEFV 251 Query: 201 AQGMDCSKRAAEQVAAAEVLKRE 223 +G SK+ +++ AA VL+ Sbjct: 252 GEGEGKSKKISKKNAAIAVLEEL 274 >gi|312219307|emb|CBX99251.1| hypothetical protein [Leptosphaeria maculans] Length = 425 Score = 66.3 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 71/264 (26%), Gaps = 59/264 (22%) Query: 2 SALRYSTLEKRIGYAFANR-SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 S+ + L R+ +L + L H S + L LG +LG S L Sbjct: 112 SSTKLHALRSRLSLPPRFPLQVLARTLVHPSADPDPAFNNASLSILGRHLLGYYTSEWLL 171 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLA--------------SFIRVSSDL--- 103 ++ L + + + + VA E + F R+ + Sbjct: 172 CNYPRLPMSVLFAAVEAYIGPKALATVASEWGIEAAAEPGGEVEPGLLQFKRIKAGEQLP 231 Query: 104 --------RKDVCSFMTSIQ----------------------------ADVVESLIAALY 127 K + I V +LI AL+ Sbjct: 232 AVLTRQVPWKWNVTTTHKIMRTDEFGSKSAPVGAHTLQKTPVPMEEAAQSFVRALIGALH 291 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE---LQEWAHAKFGVTPEYKVTFRSGPD 184 L G + F ++ R L + D +T L + P ++ +G Sbjct: 292 LHLGSPLVKRFFRDHFLSRHLDISQLF-DFRTPTRDLSRLCAREGLEPPIARLISETGRL 350 Query: 185 HD-PRFTVVVEISGLAPAQGMDCS 207 P F V +G S Sbjct: 351 SAYPVFVAGVYSGRDKLGEGSGSS 374 >gi|73992229|ref|XP_867100.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen homolog isoform 5 [Canis familiaris] Length = 600 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + PEYK+ GP H FTV + + + S + A+ AAA+ L+ Sbjct: 20 NKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIKKAQHTAAAKALE 71 Score = 64.7 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G +K+ A++ Sbjct: 308 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGAGTNKKVAKRN 366 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 367 AAENMLEILG 376 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 214 EIALKRNLP-VNFEVARESGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 271 Query: 223 E 223 Sbjct: 272 L 272 >gi|73992225|ref|XP_867078.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen homolog isoform 4 [Canis familiaris] Length = 577 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + PEYK+ GP H FTV + + + S + A+ AAA+ L+ Sbjct: 20 NKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIKKAQHTAAAKALE 71 Score = 64.7 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G +K+ A++ Sbjct: 308 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGAGTNKKVAKRN 366 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 367 AAENMLEILG 376 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + ++ + + +++ E A + ++V SGP H F V + G Sbjct: 194 RRLGEQLDEEENLNKSEISQVFEIALKRNLP-VNFEVARESGPPHMKSFVTKVSV-GEFV 251 Query: 201 AQGMDCSKRAAEQVAAAEVLKRE 223 +G SK+ +++ AA VL+ Sbjct: 252 GEGEGKSKKISKKNAAIAVLEEL 274 >gi|297259616|ref|XP_001099701.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 3 [Macaca mulatta] Length = 529 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 23/200 (11%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELD---LAS 95 ERLE + G N + ++ E++++ N V+ E+ QVARE + + Sbjct: 113 ERLE-----VNGRESEEENLNKSEISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKN 167 Query: 96 FI-RVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 F+ +VS + + + +++ L + V K++ K Sbjct: 168 FVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVER-VKPRIKKKTKPIVK 226 Query: 153 FRR--------DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ G A+G Sbjct: 227 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGA 285 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 286 GTNKKVAKRNAAENMLEILG 305 >gi|194227228|ref|XP_001917073.1| PREDICTED: similar to Double-stranded RNA-specific editase B2 (dsRNA adenosine deaminase B2) (RNA-dependent adenosine deaminase 3) (RNA-editing deaminase 2) (RNA-editing enzyme 2) [Equus caballus] Length = 732 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y++ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 125 PKNALVQL--HELRPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 181 Query: 217 AEVLK 221 L+ Sbjct: 182 ELALR 186 >gi|28277444|gb|AAH44344.1| Adar protein [Danio rerio] Length = 917 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E + + G ++ T + GP HDPRF V++ + SK+AA Q+ Sbjct: 742 KNPVSVLMEHSQ-RSGHPIQFIKTGQEGPSHDPRFMFRVKVGERLFQEASAPSKKAARQL 800 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 801 AAEEAVKEL 809 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 ++ + L E+A G T E+ + +SGP HDPRF + V + G + Sbjct: 627 KNPVSGLMEFAQ-HLGYTCEFLLLEQSGPSHDPRFRMQVMLDGRRFPAAEGSN 678 Score = 39.3 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 +A + L E+A A+ E ++ +SGP H+P+FT ++ G Sbjct: 865 LNNNAVSGLLEYARARGFAA-EIRLVGQSGPSHEPKFTYQAKLGGR 909 >gi|18858253|ref|NP_571671.1| double-stranded RNA-specific adenosine deaminase [Danio rerio] gi|7770273|gb|AAF69672.1| double-stranded RNA-specific editase [Danio rerio] Length = 1382 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E + + G ++ T + GP HDPRF V++ + SK+AA Q+ Sbjct: 742 KNPVSVLMEHSQ-RSGHPIQFIKTGQEGPSHDPRFMFRVKVGERLFQEASAPSKKAARQL 800 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 801 AAEEAVKEL 809 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 ++ + L E+A G T E+ + +SGP HDPRF + V + G + Sbjct: 627 KNPVSGLMEFAQ-HLGYTCEFLLLEQSGPSHDPRFRMQVMLDGRRFPAAEGSN 678 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 24/46 (52%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++ +SGP H+P+FT ++ G +K+ +Q AA L+ Sbjct: 888 RLVGQSGPSHEPKFTYQAKLGGRWFPAVCASNKKQGKQEAADAALR 933 >gi|145539580|ref|XP_001455480.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124423288|emb|CAK88083.1| unnamed protein product [Paramecium tetraurelia] Length = 822 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 86/255 (33%), Gaps = 48/255 (18%) Query: 11 KRIGYAFANRSLLEKAL-THSS-----------------ISHSYQESYERLEFLGDRILG 52 + I Y F N+ +L ++ S + ++ LE +GD +L Sbjct: 576 EVIEYQFHNKYILYESFRVQGSNMDLDLPLELYYKFLLNSNTPSTRGHQMLELIGDAVLE 635 Query: 53 L-LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL-ASF-----------IRV 99 ++ L L+S S++A ++ +F +++ Sbjct: 636 CYIMCNCFNQIIFKFTPTNLYKIKMVLLSNSFLSKIAICYNIMHNFQDTAILQFIETVKL 695 Query: 100 SSDLRKDVCSFM--TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA-------LKS 150 +F+ + +D E+L+ A+++DGG + F+ K + + Sbjct: 696 DEKFTYYNGNFVRVPKVLSDTFEALVGAIFMDGGWQPVCKFLKKVYLKFIPFVCTYLNDI 755 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 D + +++ +K G +G +F + I G + +R Sbjct: 756 DDHVID---RVHQYSASKQGHMDIKSFKQENG-----QFCYEIRIDGQIVGRFTHEHERV 807 Query: 211 AEQVAAAEVLKREGI 225 A++ A K+ I Sbjct: 808 AKEKACESACKKLKI 822 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 29/162 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S IG R +++A++ +S + +YE LE LGD IL L + + + Sbjct: 353 ISEFANSIGIEPNLR--VQRAISRASYNRDI--NYELLETLGDSILKYLATVSVSLGPQN 408 Query: 66 AKEGELSVRFNSLVSAETCSQVARE---LDLASFIRVSSDLRKDVCSFMTSI-------- 114 E LS + + +V+ + + L ++R K + +I Sbjct: 409 TNENILSDQRSQIVNNNFIGKHLFKYQYFGLFHYVRSLGHQTKWFSPVLQNIHSNHIQPE 468 Query: 115 -------------QADVVESLIAALYLDG-GIEVAGTFVDKY 142 AD+ ESLIA ++LD + F+ Sbjct: 469 PIKQVSATMLVTFLADIFESLIATVFLDKDSLYDVYKFLLHL 510 >gi|27357042|gb|AAN86547.1| adenosine deaminase [Takifugu rubripes] Length = 750 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G +GM +K+ A+ AA Sbjct: 128 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMTVEVNGQ-IFEGMGPTKKKAKLNAA 184 Query: 217 AEVLK 221 + L+ Sbjct: 185 EKALR 189 Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 6/67 (8%) Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 A S ++ L E +Y SG H F + V + Sbjct: 269 PLPPPSAFTSPSSGKNPVMILNEL-----RPGLKYDFVSESGESHAKNFVMSVTVDAQT- 322 Query: 201 AQGMDCS 207 +G + Sbjct: 323 FEGCGRN 329 >gi|74096351|ref|NP_001027865.1| adenosine deaminase ADAR2-b variant [Takifugu rubripes] gi|7798622|gb|AAF69765.1| double stranded RNA adenosine deaminase RED1B [Takifugu rubripes] gi|22506833|gb|AAM97656.1| adenosine deaminase ADAR2-b variant [Takifugu rubripes] Length = 698 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G +GM +K+ A+ AA Sbjct: 76 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMTVEVNGQ-IFEGMGPTKKKAKLNAA 132 Query: 217 AEVLK 221 + L+ Sbjct: 133 EKALR 137 Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 6/67 (8%) Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 A S ++ L E +Y SG H F + V + Sbjct: 217 PLPPPSAFTSPSSGKNPVMILNEL-----RPGLKYDFVSESGESHAKNFVMSVTVDAQT- 270 Query: 201 AQGMDCS 207 +G + Sbjct: 271 FEGCGRN 277 >gi|47220235|emb|CAF99000.1| unnamed protein product [Tetraodon nigroviridis] Length = 810 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G +GM +K+ A+ AA Sbjct: 177 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMTVEVNGQ-IFEGMGPTKKKAKLNAA 233 Query: 217 AEVLK 221 + L+ Sbjct: 234 EKALR 238 >gi|45383650|ref|NP_989571.1| RNA-specific adenosine deaminase B1 [Gallus gallus] gi|161702982|ref|NP_001104544.1| RNA-specific adenosine deaminase B1 [Gallus gallus] gi|15529498|gb|AAL01306.1|AF403115_1 adenosine deaminase [Gallus gallus] gi|15529506|gb|AAL01310.1| adenosine deaminase [Gallus gallus] gi|53127005|emb|CAG31002.1| hypothetical protein RCJMB04_1i12 [Gallus gallus] Length = 701 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 80 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMAVEVNGQV-FEGSGPTKKKAKLHAA 136 Query: 217 AEVLK 221 + L+ Sbjct: 137 EKALR 141 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 15/162 (9%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +A E L++ V+ + S A D + + V S + + Sbjct: 145 QFPNASEAHLAMGRTLSVNTDFTSDQA---DFPDTLF--NGFETPVPSDASFYLGSNGDG 199 Query: 122 LIAALYLDGGIE--VAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + + G+ + + + +L ++ L E +Y+ Sbjct: 200 SFGSS-REYGLSSAAVASSLTQLPLPASLPYPTASGKNPVMILNEL-----RPGLKYEFL 253 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 SG H F + V + G +G +K+ A+ AA L Sbjct: 254 SESGESHAKNFVMAVAVDGQT-FEGSGRNKKLAKARAAQSAL 294 >gi|328705090|ref|XP_003242690.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A homolog A-like [Acyrthosiphon pisum] Length = 341 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 1/66 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 R+ LQE + P Y G H FTV +S G+ SK+ Sbjct: 115 DNDERNPIGMLQELCTSLHLPPPVYITECEDGLPHQRLFTVSCNVSEYKE-TGVGKSKKI 173 Query: 211 AEQVAA 216 A+++AA Sbjct: 174 AKRLAA 179 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T LQ+ + + T +Y++ G P F V G A G SK+ A+Q AA Sbjct: 18 TLLQDVLNKQGVRTVQYELLQIEGAVSAPSFQYRVT-DGRFVAYGQGKSKKEAKQNAAKA 76 Query: 219 VLK 221 +L+ Sbjct: 77 LLR 79 >gi|332024427|gb|EGI64625.1| Double-stranded RNA-specific editase Adar [Acromyrmex echinatior] Length = 673 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y V ++GP H P FT+ V+I G +G +K+ A+ AA L+ Sbjct: 108 TYNVVGQTGPTHAPIFTIAVQIDGQTY-EGKGRTKKMAKHAAAELALRN 155 >gi|291392312|ref|XP_002712549.1| PREDICTED: mitochondrial ribosomal protein L44 [Oryctolagus cuniculus] Length = 332 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 66/191 (34%), Gaps = 11/191 (5%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 + + L G ++ L + + + + L S E VAR L + + Sbjct: 120 KDNQELSTQGSSFSRTCLTQFLEDEYPDLPAEGIESLVDFLTSEEVVCHVARNLAVEQ-L 178 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155 +S+D S+ ++I AL G E F+ + + F Sbjct: 179 TLSADFPVP-----PSVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWK 233 Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212 + L E + PE ++T +SG P + V + A+G + AE Sbjct: 234 IINPMGLLVEELKKRKISAPESRLTRQSGSTTALPLYFVGLYCDKKLIAEGPGETVLVAE 293 Query: 213 QVAAAEVLKRE 223 + AA L++ Sbjct: 294 EEAARVALRKL 304 >gi|126322875|ref|XP_001366516.1| PREDICTED: similar to interleukin enhancer binding factor 3, 90kDa, [Monodelphis domestica] Length = 1084 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K + E + G+ +Y++ +G HD RF + VE+ G QG +K+ A+ Sbjct: 707 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSNKKVAK 763 Query: 213 QVAAAEVLKRE 223 AA L++ Sbjct: 764 AFAALTALEKL 774 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 597 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDG-SSFEASGPSKKTAKLHVAVKVLQDMGLPT 655 >gi|15529502|gb|AAL01308.1|AF403117_1 adenosine deaminase [Gallus gallus] gi|15529510|gb|AAL01312.1| adenosine deaminase [Gallus gallus] Length = 680 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 59 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMAVEVNGQV-FEGSGPTKKKAKLHAA 115 Query: 217 AEVLK 221 + L+ Sbjct: 116 EKALR 120 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 15/162 (9%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +A E L++ V+ + S A D + + V S + + Sbjct: 124 QFPNASEAHLAMGRTLSVNTDFTSDQA---DFPDTLF--NGFETPVPSDASFYLGSNGDG 178 Query: 122 LIAALYLDGGIE--VAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + + G+ + + + +L ++ L E +Y+ Sbjct: 179 SFGSS-REYGLSSAAVASSLTQLPLPASLPYPTASGKNPVMILNEL-----RPGLKYEFL 232 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 SG H F + V + G +G +K+ A+ AA L Sbjct: 233 SESGESHAKNFVMAVAVDGQT-FEGSGRNKKLAKARAAQSAL 273 >gi|195108151|ref|XP_001998656.1| GI24090 [Drosophila mojavensis] gi|193915250|gb|EDW14117.1| GI24090 [Drosophila mojavensis] Length = 873 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEV 219 L E P+Y + SGP H F VEI+G +K+ A+ AA Sbjct: 804 LNELTSKNKWTPPQYTLKDDSGPSHSRMFLFSVEINGQTYTPAQACNNKKEAKLNAAKLC 863 Query: 220 LKREGIW 226 L+ GI Sbjct: 864 LRALGIL 870 >gi|321468964|gb|EFX79946.1| hypothetical protein DAPPUDRAFT_318955 [Daphnia pulex] Length = 311 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 36/165 (21%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T ++++ ++ +RLE LGD +LGLL+S L+ F K G+L ++L ++ + Sbjct: 98 TTANLTSCTVKNGDRLEVLGDAVLGLLVSIGLYRTFTKYKPGDLIRHRSALTCNDSFGVL 157 Query: 88 ARELDLASFIR-VSSDLRKDVCSFMTS--------------------------------- 113 + + + F+ + L + F+ + Sbjct: 158 SVKFGIHKFLLGMPPSLLHNANKFVENQEEASHPYSNKSYSLARSTPQSSIAARCIKVPV 217 Query: 114 IQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRD 156 + ADV ES+ A+++D + ++ + G D Sbjct: 218 VLADVFESVTGAIFIDSKASLTALQNSFQPFFNDANDQYGSCILD 262 Score = 36.6 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%) Query: 9 LEKRIGYAFANRSLLEKALTHS-----SISHSYQESYERLEFLGDRILGLLIS 56 L++ + F N L ALT +++ ++ +RLE LGD +L L Sbjct: 17 LKEILVDRFKNERL-HLALTQPDSTTANLTSCTVKNGDRLEVLGDAVLAYLTC 68 >gi|90076086|dbj|BAE87723.1| unnamed protein product [Macaca fascicularis] Length = 502 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 23/200 (11%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELD---LAS 95 ERLE + G N + ++ E++++ N V+ E+ QVARE + + Sbjct: 86 ERLE-----VNGGESEEENLNKSEISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKN 140 Query: 96 FI-RVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 F+ +VS + + + +++ L + V K++ K Sbjct: 141 FVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVER-VKPRIKKKTKPIVK 199 Query: 153 FRR--------DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ G A+G Sbjct: 200 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGA 258 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 259 GTNKKVAKRNAAENMLEILG 278 >gi|23238148|ref|NP_694466.1| Vp8 [Kadipiro virus] gi|3850247|gb|AAC72049.1| Vp8 [Kadipiro virus] Length = 302 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + K LQE + P Y+ + GPDH P TV + +G+ + S+ AE++ Sbjct: 2 NNVKGMLQELCVKRGLELPVYEKLSKVGPDHAPTITVKLTANGIEVIEA-ASSRAQAEKL 60 Query: 215 AAAEVLKRE 223 AAA + ++ Sbjct: 61 AAATLYEKM 69 >gi|301777794|ref|XP_002924315.1| PREDICTED: double-stranded RNA-specific editase B2-like [Ailuropoda melanoleuca] Length = 1006 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + +Y++ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 426 PKNALVQL--HDLRPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 482 Query: 217 AEVLK 221 L+ Sbjct: 483 ELALR 487 Score = 37.4 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 19/68 (27%), Gaps = 11/68 (16%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD---HDPRFTVVVEISGLAPA 201 R + R+ L E Y P H F + V + G Sbjct: 533 PRPGPTAPGERNPVVVLNEL-----RSGLRYVCLAE--PAEKQHAKSFVMAVSVDGRT-F 584 Query: 202 QGMDCSKR 209 +G SK+ Sbjct: 585 EGSGRSKK 592 >gi|73949198|ref|XP_544281.2| PREDICTED: similar to Double-stranded RNA-specific editase B2 (dsRNA adenosine deaminase B2) (RNA dependent adenosine deaminase 3) (RNA editing deaminase 2) (RNA editing enzyme 2) [Canis familiaris] Length = 784 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + +Y++ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 173 PKNALVQL--HDLRPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 229 Query: 217 AEVLK 221 L+ Sbjct: 230 ELALR 234 >gi|242081359|ref|XP_002445448.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor] gi|241941798|gb|EES14943.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor] Length = 298 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC--SKRAAEQV 214 K LQ +A + P YKV G H P+F VE+ G + K+ AEQ Sbjct: 48 HKNRLQSFAERTYKKPPVYKVESE-GASHQPKFRCTVEVGGQQFSSA-GSFDRKKEAEQD 105 Query: 215 AAAEVLK 221 AA + Sbjct: 106 AARIAYE 112 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K+ L E+A P Y + + P F +V G + +K+ AEQ AA Sbjct: 137 KSILNEFAVKTKTTWPSYSLVYIEKP--LTLFAAIVVFDGNSYTGESARNKKDAEQNAAR 194 Query: 218 EVLK 221 V+K Sbjct: 195 AVIK 198 >gi|224055960|ref|XP_002192699.1| PREDICTED: RNA-specific adenosine deaminase B1 [Taeniopygia guttata] Length = 768 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +YK+ ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 147 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPMFVMAVEVNGQV-FEGSGPTKKKAKLHAA 203 Query: 217 AEVLK 221 + L+ Sbjct: 204 EKALR 208 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 6/71 (8%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 ++ L E +Y+ SG H F + V + G +G +K+ Sbjct: 297 PTASGKNPVMILNEL-----RPGLKYEFLSESGESHAKNFIMAVAVDGQT-FEGSGRNKK 350 Query: 210 AAEQVAAAEVL 220 A+ AA L Sbjct: 351 LAKARAAQSAL 361 >gi|123240384|emb|CAM17303.1| staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus] Length = 485 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 197 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 255 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 256 AAENMLEILG 265 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 103 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 160 Query: 223 E 223 Sbjct: 161 L 161 >gi|51896012|gb|AAH82277.1| Stau1 protein [Mus musculus] Length = 576 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 284 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 342 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 343 AAENMLEILG 352 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 190 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 247 Query: 223 E 223 Sbjct: 248 L 248 >gi|158186639|ref|NP_001103375.1| double-stranded RNA-binding protein Staufen homolog 1 isoform 2 [Mus musculus] gi|14861636|gb|AAK73752.1|AF395842_1 staufen isoform I2 [Mus musculus] gi|12836618|dbj|BAB23736.1| unnamed protein product [Mus musculus] gi|15277960|gb|AAH12959.1| Staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus] gi|123240383|emb|CAM17302.1| staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus] gi|148674544|gb|EDL06491.1| staufen (RNA binding protein) homolog 1 (Drosophila), isoform CRA_a [Mus musculus] Length = 489 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 197 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 255 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 256 AAENMLEILG 265 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 103 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 160 Query: 223 E 223 Sbjct: 161 L 161 >gi|74214463|dbj|BAE31085.1| unnamed protein product [Mus musculus] Length = 489 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 197 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 255 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 256 AAENMLEILG 265 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 103 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 160 Query: 223 E 223 Sbjct: 161 L 161 >gi|74204587|dbj|BAE35365.1| unnamed protein product [Mus musculus] Length = 587 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 295 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 353 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 354 AAENMLEILG 363 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 201 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 258 Query: 223 E 223 Sbjct: 259 L 259 >gi|74198409|dbj|BAE39688.1| unnamed protein product [Mus musculus] Length = 577 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 285 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 343 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 344 AAENMLEILG 353 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 191 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 248 Query: 223 E 223 Sbjct: 249 L 249 >gi|74199026|dbj|BAE30728.1| unnamed protein product [Mus musculus] gi|74220489|dbj|BAE31464.1| unnamed protein product [Mus musculus] Length = 485 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 197 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 255 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 256 AAENMLEILG 265 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 103 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 160 Query: 223 E 223 Sbjct: 161 L 161 >gi|74137731|dbj|BAE24052.1| unnamed protein product [Mus musculus] Length = 579 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 287 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 345 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 346 AAENMLEILG 355 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 193 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 250 Query: 223 E 223 Sbjct: 251 L 251 >gi|6755674|ref|NP_035620.1| double-stranded RNA-binding protein Staufen homolog 1 isoform 3 [Mus musculus] gi|9789804|sp|Q9Z108|STAU1_MOUSE RecName: Full=Double-stranded RNA-binding protein Staufen homolog 1 gi|4335945|gb|AAD17529.1| RNA-binding protein staufen [Mus musculus] gi|123240381|emb|CAM17300.1| staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus] gi|148674545|gb|EDL06492.1| staufen (RNA binding protein) homolog 1 (Drosophila), isoform CRA_b [Mus musculus] Length = 487 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 195 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 253 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 254 AAENMLEILG 263 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 103 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 160 Query: 223 E 223 Sbjct: 161 L 161 >gi|156374036|ref|XP_001629615.1| predicted protein [Nematostella vectensis] gi|156216619|gb|EDO37552.1| predicted protein [Nematostella vectensis] Length = 580 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++ E+++ + GP HD F V V ++G +G SK+ A+ AA + L+ Sbjct: 5 EYKPGLEFRLVSQEGPPHDTTFVVAVTVNGQTY-EGKGSSKQRAKHDAAEKALQ 57 Score = 43.9 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Query: 164 WAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + +Y+ F G +HD F +E++G+ G SK+ A+ VAA + L + Sbjct: 114 YLNELHPTQIDYQ--FEEGTSEHDK-FICNIELNGVE-FSGTGTSKKKAKVVAATKALAK 169 >gi|149639809|ref|XP_001507143.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 719 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V+I G+ +G +K+ A++ Sbjct: 385 MNPISRLAQIQQAKKEREPEYLLVTERGLPRRREFVMQVKI-GVHTTEGAGTNKKVAKRN 443 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 444 AAENMLELLG 453 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + PEYK+ GP H FTV + + Q S + A+ AA + L+ Sbjct: 92 NKIQPEYKLLSEQGPAHSKVFTVQLTLGDQRW-QSEGTSIKKAQHGAATKALQ 143 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F P +VT +GP H F V + G +G SK+ +++ AA VL+ Sbjct: 295 NFEFFPLKQVTKENGPPHMKSFLTKVSV-GEFTGEGEGKSKKISKKNAAIAVLEEL 349 >gi|169595488|ref|XP_001791168.1| hypothetical protein SNOG_00483 [Phaeosphaeria nodorum SN15] gi|111070858|gb|EAT91978.1| hypothetical protein SNOG_00483 [Phaeosphaeria nodorum SN15] Length = 167 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 59/149 (39%), Gaps = 20/149 (13%) Query: 1 MSAL--RYSTLEKRIGYAFANRSLLEKAL------THSSIS--HSYQESYERLEFLGDRI 50 M+ + + + +E+ IGY + ++ + +AL + S+ + LE +GD I Sbjct: 1 MANIEQKIAIIEQIIGYIYTDKLICLEALQMNMDPMYVSLGGIRHLVRKNKNLETVGDAI 60 Query: 51 LGLLISTLLFNHFDSAKEGELS------VRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 + ++ + F + LS + + R + + I +++ Sbjct: 61 IDAVLCKKWYE-FRDSHGHRLSVEQFDSQIRQRNACNNFFTAIGRANGIDACILMNAG-- 117 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIE 133 + A+ VE++I A Y+D G+ Sbjct: 118 -MGNRASDGMVANTVEAVIGAAYIDAGVN 145 >gi|297736909|emb|CBI26110.3| unnamed protein product [Vitis vinifera] Length = 826 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 6/71 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE AH P Y RSGP H P F V+I+ G +K+ A++ A Sbjct: 88 YKNLLQETAHRAGLKLPVYTTV-RSGPGHIPVFFCTVDIA-KMSFTGEPAKTKKQAQKNA 145 Query: 216 AAE---VLKRE 223 A LKR Sbjct: 146 AMAAWSALKRL 156 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215 K +LQE A P Y R GPDH PRF V +G C+ R AE A Sbjct: 2 YKNQLQELAQRSCFNLPSYACI-REGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAA 60 Query: 216 AAEVLK 221 A L Sbjct: 61 AEVALN 66 >gi|225432380|ref|XP_002276654.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 563 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 6/71 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE AH P Y RSGP H P F V+I+ G +K+ A++ A Sbjct: 88 YKNLLQETAHRAGLKLPVYTTV-RSGPGHIPVFFCTVDIA-KMSFTGEPAKTKKQAQKNA 145 Query: 216 AAE---VLKRE 223 A LKR Sbjct: 146 AMAAWSALKRL 156 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215 K +LQE A P Y R GPDH PRF V +G C+ R AE A Sbjct: 2 YKNQLQELAQRSCFNLPSYACI-REGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAA 60 Query: 216 AAEVLK 221 A L Sbjct: 61 AEVALN 66 >gi|255540729|ref|XP_002511429.1| conserved hypothetical protein [Ricinus communis] gi|223550544|gb|EEF52031.1| conserved hypothetical protein [Ricinus communis] Length = 185 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 11/127 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L+K+I N LL +A+TH S S +E+ L +G ++ +S Sbjct: 44 LEALQKQIK---QNVGLLRRAMTHPSFS---EENNRALSVMGSNVIDTFVSLFSLRKDID 97 Query: 66 AKEGELSVRFNSLVSAET-CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EL+ R + ET C+ L L +RVS S ++ +L Sbjct: 98 ISSKELNRRIAEISKVETSCAVDGMRLGLDKVVRVS----YKTNSTAPAVVCGAFRALFG 153 Query: 125 ALYLDGG 131 A+ +D G Sbjct: 154 AIAIDTG 160 >gi|317419725|emb|CBN81761.1| Double-stranded RNA-specific editase B2 [Dicentrarchus labrax] Length = 726 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y++ ++GP H P F++ VE++GL +G +K+ A+ AA Sbjct: 97 PKNALVQL--NELRPGLQYRMVSQTGPVHAPVFSIAVEVNGLT-FEGTGPTKKKAKMRAA 153 Query: 217 AEVLK 221 LK Sbjct: 154 ELALK 158 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F + V + G +G SK+ A+ AA L+ Sbjct: 283 RSFVMAVRVDGR-IFEGCGRSKKLAKNQAAQCALQAL 318 >gi|115298524|ref|YP_762377.1| 47.7 kDa RNAse III [Spodoptera frugiperda ascovirus 1a] gi|114416791|emb|CAL44622.1| 47.7 kDa RNAse III [Spodoptera frugiperda ascovirus 1a] Length = 417 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 76/248 (30%), Gaps = 61/248 (24%) Query: 16 AFANRSLLEK---ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA-----K 67 F + ++K ALT S + +YE E++GD ++ I + ++ Sbjct: 166 TFRDEGNMDKFQAALT--SKEYDNIFNYEYFEYIGDSVINRFIIDYIRENYTDIHNIQQD 223 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRV------SSDLRKDVCSFMT--------- 112 G ++ + V S+ + L FIR L+ F Sbjct: 224 IGVMTKLRSIYVGKWNLSKCCVSIGLNKFIRCQYAGVDGRKLQVYGHRFKRNNASGVQCQ 283 Query: 113 ----------------------SIQADVVESLIAALYLD-----GGIEVAGTFVDKYWKQ 145 S+ DV+ES + AL+ ++ FV Sbjct: 284 PKVCADSVYTDTTSTHIHRDVISLLEDVMESFVGALWCSLMGSPHCTKIVRQFVYGVIGD 343 Query: 146 RALKSGKFRRD---AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG-LAPA 201 A + A+ LQ + FG ++ + PD +T V + G + Sbjct: 344 YAGIVEPSYVNLNSARDRLQIASKELFGDRITWRTV--TNPD--TSYTCSVYMDGDTVIS 399 Query: 202 QGM-DCSK 208 S+ Sbjct: 400 SATAGRSR 407 >gi|102139807|gb|ABF69992.1| double-stranded RNA-binding (DsRBD) domain-containing protein [Musa acuminata] Length = 610 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K LQE AH P Y RSGP H P FT VE++G++ G +K+ A++ A Sbjct: 88 YKNLLQETAHRAGLKLPVYTTV-RSGPGHTPIFTCTVELAGMS-FTGDPAKTKKQAQKNA 145 Query: 216 AAEV 219 A Sbjct: 146 AMAA 149 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215 K +LQE A P Y R GPDH PRF V +G A CS R AE A Sbjct: 2 YKNQLQELAQRSCFNLPSYASI-REGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHSA 60 Query: 216 AAEVLK 221 A L Sbjct: 61 AEVALN 66 >gi|281353109|gb|EFB28693.1| hypothetical protein PANDA_013628 [Ailuropoda melanoleuca] Length = 637 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + +Y++ ++GP H P F V VE++GL +G +K+ A+ AA Sbjct: 63 PKNALVQL--HDLRPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 119 Query: 217 AEVLK 221 L+ Sbjct: 120 ELALR 124 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 11/69 (15%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD---HDPRFTVVVEISGLAP 200 + R + R+ L E Y P H F + V + G Sbjct: 163 EPRPGPTAPGERNPVVVLNEL-----RSGLRYVCLAE--PAEKQHAKSFVMAVSVDGRT- 214 Query: 201 AQGMDCSKR 209 +G SK+ Sbjct: 215 FEGSGRSKK 223 >gi|194665306|ref|XP_581374.4| PREDICTED: adenosine deaminase, RNA-specific [Bos taurus] gi|297472608|ref|XP_002686059.1| PREDICTED: RNA adenosine deaminase-like [Bos taurus] gi|296489763|gb|DAA31876.1| RNA adenosine deaminase-like [Bos taurus] Length = 1149 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ T L E H K G + E+++ R GP HDP+F V + SK+AA+Q+ Sbjct: 562 KNPVTTLLECVH-KLGSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKAAKQM 620 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 621 AAEEAMKAL 629 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 451 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 509 Query: 215 AAAEVL 220 AA + + Sbjct: 510 AAMKAM 515 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 680 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 738 Query: 221 K 221 + Sbjct: 739 R 739 >gi|297798116|ref|XP_002866942.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata] gi|297312778|gb|EFH43201.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata] Length = 537 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 54/166 (32%), Gaps = 14/166 (8%) Query: 21 SLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 +LL A H S + + + RL FLG +L L ++ + G + R Sbjct: 169 TLLYLAFQHPSCDRARARHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVF 228 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +L+ + + L + I D+ K + V +L A+YL G+ Sbjct: 229 ALIGKRYLPKWIKAASLQNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCYGMPEVY 288 Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + + + + ++ + +Y G Sbjct: 289 RVLFEVFG---MDPDADECQPRSR-------RQLEDVDYVSVEFEG 324 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 10/145 (6%) Query: 18 ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + +ERLE++G +I + ++ L A L Sbjct: 394 RNIELGLGLQLCFLHPSKHKFEHPRFCFERLEYVGQKIQDIAMAERLLMKHLDAPGKWLQ 453 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYL 128 + L+ + C + RE L +FI S D ++ V +++ Y Sbjct: 454 EKHRRLLMNKFCGRYLREKRLHNFITYSE-EVHDRYEHNRRLRNPATTAVQQAIHGLAYT 512 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF 153 G + + + ++ Sbjct: 513 IYGKPDVRRLMFEVFDFEQIQPKAV 537 >gi|307191761|gb|EFN75203.1| Interferon-inducible double stranded RNA-dependent protein kinase activator A [Harpegnathos saltator] Length = 336 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 LQ+ PEY GP H FT+ +S + G+ +K+ A+ AA ++ Sbjct: 113 ALQDLCAENNLQEPEYVPVSDVGPPHARVFTIRCVVSNFSE-DGVGTTKKQAKHDAAKKM 171 Query: 220 LKR 222 + + Sbjct: 172 VDK 174 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE K V P Y++ G H FT V G A G K+ A+ AA Sbjct: 5 PVSILQEMMVKKGSV-PNYELIHDGGGTHINTFTYKVTCDGFT-ATGTGRCKKDAKHEAA 62 Query: 217 AEVL 220 +L Sbjct: 63 NAML 66 >gi|208690891|gb|ACI31221.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Ateles geoffroyi] Length = 552 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K EL ++ + V YK SGP HD RFT V I G + SK+ A AA Sbjct: 10 FKEELNKYRQKQGVVL-RYKELPNSGPPHDRRFTFQVIIDGREFPEAEGRSKKEATNAAA 68 Query: 217 A---EVLKREG 224 E+L RE Sbjct: 69 KVAVEILNREN 79 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 A K T Y+ V+ +GP+ F ++ G +K+ A+Q+AA Sbjct: 108 IAQKKRL-TVNYEPCVSGMNGPEG---FHYKCKVGQKEYGIGTGSTKQEAKQLAAKLA 161 >gi|7798620|gb|AAF69764.1| double-stranded RNA adenosine deaminase DRADA [Takifugu rubripes] Length = 1194 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+ G E+ +T ++GP HD RF V++ ++ SK+AA Q+ Sbjct: 580 KNPVSVLMEYGQ-HSGNPIEFIMTGQAGPPHDTRFMYRVKVGENLFSEASAPSKKAARQL 638 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 639 AAEEAVKEL 647 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 +A + L E+A A+ E ++ +SGP H+P+FT ++ G +K+ + Sbjct: 703 LNNNAVSGLLEYAKARGFAA-EIRLVGQSGPPHEPKFTYQAKLGGRWFPAVCASNKKQGK 761 Query: 213 QVAAAEVLK 221 Q AA L+ Sbjct: 762 QEAADAALR 770 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 ++ + L E+A G E+ + +SGP HDPRF + V ++G S Sbjct: 470 KNPVSGLMEYAQ-FLGQNCEFLLLDQSGPSHDPRFRMQVMLNGRQFPVAEASS 521 >gi|7798626|gb|AAF69767.1| double stranded RNA adenosine deaminase RED2 [Takifugu rubripes] Length = 725 Score = 65.1 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y++ ++GP H P F++ VE++GL +G +K+ A+ AA Sbjct: 100 PKNALVQL--NELRPGLQYRMVSQTGPVHAPIFSIAVEVNGLT-FEGTGPTKKKAKMRAA 156 Query: 217 AEVLK 221 LK Sbjct: 157 ELALK 161 Score = 44.7 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 17/168 (10%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +A + L++ +S + + D + + CS SI + ES Sbjct: 165 QFPNAPQAHLAM---GNISNPAADFTSDQADFPDTLF--KEFESSQCSDSLSICSSGKES 219 Query: 122 -LIAALYLDGGIEVAGTFVDKYWKQR----ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 L+++ L G + T Q+ ++ + + L E Y Sbjct: 220 KLLSSELLRHGRLLRHTLDLMVQAQQRLGGMVQEPESPKSPVALLNEL-----RPGLRYA 274 Query: 177 VTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F + V + G +G SK+ A+ AA L+ Sbjct: 275 CLSERAEGRKLRSFVMAVRVDGR-IFEGCGRSKKLAKNQAAQCALRAL 321 >gi|304307735|ref|NP_001182007.1| R2D2 protein [Bombyx mori] gi|300669731|dbj|BAJ11654.1| R2D2 [Bombyx mori] Length = 340 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T LQE K G PEY+ +SGP H F + G + SKR A+Q AA Sbjct: 4 PITVLQEMM-MKLGQIPEYECVAQSGPQHQATFEFRCKALGESV-SASARSKREAKQEAA 61 Query: 217 AEVL 220 +L Sbjct: 62 RAML 65 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 R L+E EY + +GP H F+V I GL +KR A Q Sbjct: 107 RSYVALLKELCEEYKLPGVEYALVADTGPAHMRLFSVRASI-GLHSRDASGTTKRQARQK 165 Query: 215 AAAEV 219 AAA++ Sbjct: 166 AAADL 170 >gi|514259|gb|AAA19960.1| dsRNA-binding protein 4F.1 [Xenopus laevis] Length = 695 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K + E + G+ +Y++ +G HD RF + VE+ G+ QG +K+ A+ Sbjct: 518 LTKHGKNPVMELNEKRRGL--KYEMISETGGSHDKRFVMEVEVDGVK-FQGSGSNKKVAK 574 Query: 213 QVAAAEVLKRE 223 AA L++ Sbjct: 575 AYAALSALEKL 585 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ + SK+ A+ A +VL+ G+ T Sbjct: 412 QLKPGLQYKLISQTGPVHAPVFTMSVEVDDKT-FEASGPSKKTAKLHVAVKVLQDMGLPT 470 >gi|260800185|ref|XP_002595015.1| hypothetical protein BRAFLDRAFT_237436 [Branchiostoma floridae] gi|229280255|gb|EEN51026.1| hypothetical protein BRAFLDRAFT_237436 [Branchiostoma floridae] Length = 634 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + +Y++ +SGP H P F + VE++G +G +K+ A+ AA +VL+ Sbjct: 27 ELKPGLQYRLISQSGPPHAPEFVMSVEMNGQT-FKGRGRTKKEAKLRAAEQVLR 79 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + +Y++ +G H F + V I G +G SK+ A+ AA L+ Sbjct: 167 ELRPGLKYELVSETGESHAKNFVMAVTIDGRT-CEGSGRSKKLAKIRAAQAALQ 219 >gi|242013589|ref|XP_002427485.1| mitochondrial 50S ribosomal protein L44, putative [Pediculus humanus corporis] gi|212511880|gb|EEB14747.1| mitochondrial 50S ribosomal protein L44, putative [Pediculus humanus corporis] Length = 361 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 83/232 (35%), Gaps = 27/232 (11%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ---------------ESYERLEFLGDRILGLLI 55 KR+ F LL +A TH S + +S E L G++I+ + Sbjct: 86 KRLKENFT-PELLVRAFTHRSYVSEQETKLQEVGVSNVDISMKSNEELVSKGEKIISDFV 144 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + + + + L+S + V++ L I +S++ + T Sbjct: 145 PKFVSYFYPRFPMEGIQSIHDYLLSNDVLGHVSKNLGTTDLI-LSAEYPVE-----TETY 198 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGV 171 + ++++I ALY G+ A FV + + +D + E + Sbjct: 199 STTLKAIIGALYECSGLNRANLFVRDFIITQLEGKDIHEFLQIKDPLKIVNEILNRDNRE 258 Query: 172 TPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E ++ +SG + V + + + A ++AA++ L+R Sbjct: 259 PCEPRIICKSGVNTILANYHVGLYSNKELVGHCSGETIDTAIEMAASDALRR 310 >gi|15235580|ref|NP_195467.1| ribonuclease III family protein [Arabidopsis thaliana] gi|4468817|emb|CAB38218.1| putative protein [Arabidopsis thaliana] gi|7270733|emb|CAB80416.1| putative protein [Arabidopsis thaliana] gi|95147308|gb|ABF57289.1| At4g37510 [Arabidopsis thaliana] gi|332661403|gb|AEE86803.1| Ribonuclease III family protein [Arabidopsis thaliana] Length = 537 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 54/166 (32%), Gaps = 14/166 (8%) Query: 21 SLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 +LL A H S + + + RL FLG +L L ++ + G + R Sbjct: 169 TLLYLAFQHPSCDRARARHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVF 228 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +L+ + + L + I D+ K + V +L A+YL G+ Sbjct: 229 ALIGKRYLPKWIKAASLQNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVY 288 Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + + + + ++ + +Y G Sbjct: 289 RVLFEVFG---MDPDADECQPRSR-------RQLEDVDYVSVEFEG 324 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 10/145 (6%) Query: 18 ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + +ERLE++G +I + ++ L A L Sbjct: 394 RNIELGLGLQLCFLHPSKHKFEHPRFCFERLEYVGQKIQDIAMAERLLMKHLDAPGKWLQ 453 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYL 128 + L+ + C + RE L +FI S D ++ V +++ Y Sbjct: 454 EKHRRLLMNKFCGRYLREKRLHNFIIYSE-EVHDRYEHNRRLRNPATTAVQQAIHGLAYT 512 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF 153 G + + + ++ Sbjct: 513 IYGKPDVRRLMFEVFDFEQIQPKAV 537 >gi|258570627|ref|XP_002544117.1| hypothetical protein UREG_03634 [Uncinocarpus reesii 1704] gi|237904387|gb|EEP78788.1| hypothetical protein UREG_03634 [Uncinocarpus reesii 1704] Length = 355 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 72/249 (28%), Gaps = 59/249 (23%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L + L +S S Q + LG+ +L S L + F G L + V + Sbjct: 101 LARTLVDASADPSLQFNNHSFAVLGNHLLTYYTSEHLISTFPRLPMGVLWASMWAYVGPK 160 Query: 83 TCSQVARELD--------------LASFIRVSSDLRKDVCSFMTS----------IQADV 118 + ++RE L F R+ + + T I + Sbjct: 161 ALAAISREWGVEHVAAPGGEVDPGLLQFKRLPPGINPSELAPNTRAVPRGVSGRVIYDNE 220 Query: 119 V------------------------ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR 154 +++ A+YL G +A F +++ R L Sbjct: 221 FGEARTASSQPPTEVSVTHANATFVRAVMGAIYLHCGRPIAKQFFKEHFMSRQLPMADLF 280 Query: 155 ------RDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCS 207 RD L + + P K+ +G P F V + +G S Sbjct: 281 SFSQPTRD----LSKLCAREGFEAPVAKIISETGRLSRHPVFVVGIFSGKDQLGEGSGAS 336 Query: 208 KRAAEQVAA 216 A AA Sbjct: 337 LSEARFRAA 345 >gi|195049901|ref|XP_001992785.1| GH13466 [Drosophila grimshawi] gi|193899844|gb|EDV98710.1| GH13466 [Drosophila grimshawi] Length = 489 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 K + LQE + P Y+ G H+ FT+ I G SK+ Sbjct: 269 DKIVGNPIGLLQEKCMQRRWPPPSYETETEVGLPHERLFTIACTILHYRE-VGKGKSKKI 327 Query: 211 AEQVAAAEVLKRE 223 A+++AA ++ R Sbjct: 328 AKRLAAHKMWTRL 340 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCS 207 + LQE ++ G+TP Y++ G H+P F V A G S Sbjct: 153 PVSMLQEML-SRLGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRS 205 >gi|298204936|emb|CBI34243.3| unnamed protein product [Vitis vinifera] Length = 551 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 6/71 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215 K LQE AH P Y RSGP H P F+ VEI+G++ G +K+ A++ A Sbjct: 88 YKNLLQETAHRAGLNLPVYTTI-RSGPGHVPVFSCTVEIAGMS-FTGEAAKTKKQAQKNA 145 Query: 216 AA---EVLKRE 223 A L++ Sbjct: 146 AMTAWSALRKL 156 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215 K +LQE A P Y R GPDH PRF V +G CS R AE A Sbjct: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAA 60 Query: 216 AAEVLK 221 A L Sbjct: 61 AEVALN 66 >gi|225451189|ref|XP_002271134.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 543 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 6/71 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215 K LQE AH P Y RSGP H P F+ VEI+G++ G +K+ A++ A Sbjct: 88 YKNLLQETAHRAGLNLPVYTTI-RSGPGHVPVFSCTVEIAGMS-FTGEAAKTKKQAQKNA 145 Query: 216 AA---EVLKRE 223 A L++ Sbjct: 146 AMTAWSALRKL 156 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215 K +LQE A P Y R GPDH PRF V +G CS R AE A Sbjct: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAA 60 Query: 216 AAEVLK 221 A L Sbjct: 61 AEVALN 66 >gi|149733337|ref|XP_001503607.1| PREDICTED: staufen, RNA binding protein, homolog 1 (Drosophila) [Equus caballus] Length = 577 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G +K+ A++ Sbjct: 285 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGAGTNKKVAKRN 343 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 344 AAENMLEILG 353 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 191 EIALKRNLP-VNFEVARESGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 248 Query: 223 E 223 Sbjct: 249 L 249 >gi|73992221|ref|XP_867056.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen homolog isoform 2 [Canis familiaris] Length = 697 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G +K+ A++ Sbjct: 405 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGAGTNKKVAKRN 463 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 464 AAENMLEILG 473 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 311 EIALKRNLP-VNFEVARESGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 368 Query: 223 E 223 Sbjct: 369 L 369 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 26/78 (33%) Query: 169 FGVTPEYKVTFRSGPDHDP-------------------------RFTVVVEISGLAPAQG 203 + PEYK+ GP H FTV + + + Sbjct: 92 NKIQPEYKLLREQGPAHCKVNIISAWCGSDFLLKEEAVSEYPHQVFTVQLTLGDQHW-EA 150 Query: 204 MDCSKRAAEQVAAAEVLK 221 S + A+ AAA+ L+ Sbjct: 151 EGTSIKKAQHTAAAKALE 168 >gi|73992231|ref|XP_867111.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen homolog isoform 6 [Canis familiaris] Length = 703 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G +K+ A++ Sbjct: 411 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGAGTNKKVAKRN 469 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 470 AAENMLEILG 479 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 317 EIALKRNLP-VNFEVARESGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 374 Query: 223 E 223 Sbjct: 375 L 375 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 26/78 (33%) Query: 169 FGVTPEYKVTFRSGPDHDP-------------------------RFTVVVEISGLAPAQG 203 + PEYK+ GP H FTV + + + Sbjct: 92 NKIQPEYKLLREQGPAHCKVNIISAWCGSDFLLKEEAVSEYPHQVFTVQLTLGDQHW-EA 150 Query: 204 MDCSKRAAEQVAAAEVLK 221 S + A+ AAA+ L+ Sbjct: 151 EGTSIKKAQHTAAAKALE 168 >gi|224078725|ref|XP_002188609.1| PREDICTED: staufen [Taeniopygia guttata] Length = 697 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 33/70 (47%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V SG+ A+GM +K+ A++ Sbjct: 381 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVGESGVHTAEGMGTNKKVAKRN 440 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 441 AAENMLEILG 450 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 163 EWAHAKFGVT-----PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 E A + P +VT SGP H F V + G +G SK+ +++ AA Sbjct: 281 EIALKRNLPVNFEFFPLKQVTKESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAI 339 Query: 218 EVLKRE 223 VL+ Sbjct: 340 AVLEEL 345 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + PEYK+ GP H FTV + + + S Sbjct: 88 NKIQPEYKLLSEQGPAHSKVFTVQLTLGDQHW-EAEGTS 125 >gi|322798626|gb|EFZ20230.1| hypothetical protein SINV_08208 [Solenopsis invicta] Length = 375 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 156 DAKTELQEWAHAKF--GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + LQE + YK ++ G DH FT+ V + A G K++A+Q Sbjct: 113 NYIGMLQELCQQEKINPKEIHYKDLYQDGQDHQKIFTIEVILGSKK-ATGTGPCKKSAKQ 171 Query: 214 VAAAEVL 220 AA ++L Sbjct: 172 EAARKLL 178 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE K G P Y T + ++ F V + A G SK+ A+ AA +L Sbjct: 11 LQELL-VKKGAVPLYTFTNKRINENRTLFVCNVSYN-KFYASGEGNSKKEAKHTAAENML 68 >gi|311254196|ref|XP_003125793.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like, partial [Sus scrofa] Length = 1171 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ T L E H K G + E+++ R GP HDP+F V + SK+AA+Q+ Sbjct: 584 KNPVTTLLECVH-KLGSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKAAKQL 642 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 643 AAEEAMKAL 651 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 473 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 531 Query: 215 AAAEVL 220 AA + + Sbjct: 532 AAMKAM 537 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 702 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 760 Query: 221 K 221 + Sbjct: 761 R 761 >gi|224613372|gb|ACN60265.1| Double-stranded RNA-binding protein Staufen homolog 1 [Salmo salar] Length = 416 Score = 64.7 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V + G A+GM SK+ A++ Sbjct: 91 MNPISRLAQIQQAKKEKEPEYSMMTERGLPRRREFVMQVTVCGH-CAEGMGPSKKVAKRN 149 Query: 215 AAAEVLKREG 224 AA ++L+ G Sbjct: 150 AAEKMLELLG 159 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++V +GP H F V V + G +G SK+ A+++AA VL+ Sbjct: 6 FEVLKEAGPPHMKSFMVCVSV-GEFCGEGEGKSKKIAKKLAATAVLEEL 53 >gi|223648210|gb|ACN10863.1| Double-stranded RNA-binding protein Staufen homolog 1 [Salmo salar] Length = 706 Score = 64.7 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V + G A+GM SK+ A++ Sbjct: 381 MNPISRLAQIQQAKKEKEPEYSMMTERGLPRRREFVMQVTVCGH-CAEGMGPSKKVAKRN 439 Query: 215 AAAEVLKREG 224 AA ++L+ G Sbjct: 440 AAEKMLELLG 449 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 12/101 (11%) Query: 133 EVAGTFVDKYWKQRALKSGKFRRDA-------KTEL-Q--EWAHAKFGVTPEYKVTFRSG 182 + A + K+ L + K+E+ Q E A + ++V +G Sbjct: 245 DAAAKALKTLQKEPILLQQLPETNGEDTENFNKSEISQVFEIALKRNMP-VNFEVLKEAG 303 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P H F V V + G +G SK+ A+++AA VL+ Sbjct: 304 PPHMKSFMVCVSV-GEFCGEGEGKSKKIAKKLAATAVLEEL 343 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + PEYK+ GP H F+V + + + S + A+ Sbjct: 88 NKIQPEYKLLCEQGPAHSKIFSVRLSLGDQHW-EAEGTSIKKAQ 130 >gi|169598446|ref|XP_001792646.1| hypothetical protein SNOG_02027 [Phaeosphaeria nodorum SN15] gi|111069119|gb|EAT90239.1| hypothetical protein SNOG_02027 [Phaeosphaeria nodorum SN15] Length = 145 Score = 64.7 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 60/145 (41%), Gaps = 13/145 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLL 59 + +++ + Y F + +LL++A S S + + +RL +GD +L L + Sbjct: 4 FKSIQDCVDYHFHDSTLLKEAFLASGAPISNKDIEGPVKGNKRLALVGDAVLRLAVLDEW 63 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F S EG R + + E ++VA +L ++ + + + + A V Sbjct: 64 FESGTSTAEG--HGRVVEVGTNERLAKVAENWNLKKYMIENPCQQGEAPRE---LLASTV 118 Query: 120 ESLIAALYLDG--GIEVAGTFVDKY 142 E+++ A++LD K Sbjct: 119 EAILGAVWLDSYQDFGEVQKVFKKL 143 >gi|297259614|ref|XP_001099908.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 5 [Macaca mulatta] Length = 523 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ G A+G +K+ A++ A Sbjct: 232 NPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGAGTNKKVAKRNA 290 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 291 AENMLEILG 299 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 137 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 194 Query: 223 E 223 Sbjct: 195 L 195 >gi|189241534|ref|XP_969823.2| PREDICTED: similar to adenosine deaminase [Tribolium castaneum] gi|270001017|gb|EEZ97464.1| hypothetical protein TcasGA2_TC011295 [Tribolium castaneum] Length = 580 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + V +Y + GP H P F V VE+ G G+ SK+ A+ AA E LK Sbjct: 27 QLRVGLKYNFIEQRGPSHAPLFKVAVEVDGQTY-YGVGGSKKLAKCKAAEEALK 79 Score = 34.7 bits (79), Expect = 9.5, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 11/40 (27%), Gaps = 2/40 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 Y G + F + V I G SK+ Sbjct: 132 PNVVYTCVENDGSAYAR-FKMTVTIGDEK-FIGTGSSKKQ 169 >gi|109091649|ref|XP_001100004.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 6 [Macaca mulatta] gi|109091651|ref|XP_001100094.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 7 [Macaca mulatta] Length = 577 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ G A+G +K+ A++ A Sbjct: 286 NPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGAGTNKKVAKRNA 344 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 345 AENMLEILG 353 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 191 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 248 Query: 223 E 223 Sbjct: 249 L 249 >gi|167535410|ref|XP_001749379.1| hypothetical protein [Monosiga brevicollis MX1] gi|163772245|gb|EDQ85900.1| predicted protein [Monosiga brevicollis MX1] Length = 234 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 +AK+ LQE A+ P Y+ SGP+H +T + + G SK+ +EQ Sbjct: 35 YNAKSTLQETLAARSLPAPIYE-HRASGPEHSLAWTSTCRLYDQSVYTGYGVSKKMSEQN 93 Query: 215 AAAEV 219 AA Sbjct: 94 AAHNA 98 Score = 44.7 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 7/95 (7%) Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD-HDPRFTV 191 E A F D+ ++ + RD K+ L + + ++ + P H + Sbjct: 138 ETADDFEDQ-YRAPSAPPVPKTRDYKSMLNQLLQRLDCIVADFADAETNVPGVHIRS--I 194 Query: 192 VVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + + + G +KR A+Q AA ++L + Sbjct: 195 GVYVKSRNQVFLGVGSAATKRDADQRAAKDLLHKL 229 >gi|148907218|gb|ABR16750.1| unknown [Picea sitchensis] Length = 388 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 6/70 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQV- 214 K LQE AH P Y T RSGP H P F +V++ G G +K+ AEQ Sbjct: 88 YKNLLQEIAHRAGLSLPVYTTT-RSGPAHLPVFKCIVDVFGTR-FNGKPAATKKQAEQNT 145 Query: 215 --AAAEVLKR 222 AA LK+ Sbjct: 146 AMAAWSALKQ 155 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 29/75 (38%), Gaps = 11/75 (14%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212 K +LQE A P Y R GPDH PRF V +G + R AE Sbjct: 2 YKNQLQELAQRNCFNLPLYGCI-RKGPDHAPRFRATVNFNGEIFES---PNYCSTLRQAE 57 Query: 213 QVAAAEV---LKREG 224 VAA L + G Sbjct: 58 LVAAEVAVNTLSKRG 72 >gi|290463410|sp|Q6DD04|ILF3B_XENLA RecName: Full=Interleukin enhancer-binding factor 3-B; AltName: Full=Double-stranded RNA-binding protein 4F.2; Short=DsRNA-binding protein 4F.2 Length = 898 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 R K + E + G+ +Y++ +G HD RF + VE+ G+ QG +K+ A+ Sbjct: 518 LTRHGKNPVMELNEKRRGL--KYELISETGGSHDKRFIMEVEVDGVK-FQGNGSNKKVAK 574 Query: 213 QVAAAEVLKRE 223 AA L++ Sbjct: 575 AYAALSALEKL 585 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ + SK+ A+ A +VL+ G+ T Sbjct: 412 QLKPGLQYKLISQTGPVHAPIFTMSVEVDDKT-FEASGPSKKTAKLHVAVKVLQDMGLPT 470 >gi|29126828|gb|AAH47984.1| LOC398578 protein [Xenopus laevis] Length = 854 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 R K + E + G+ +Y++ +G HD RF + VE+ G+ QG +K+ A+ Sbjct: 508 LTRHGKNPVMELNEKRRGL--KYELISETGGSHDKRFIMEVEVDGVK-FQGNGSNKKVAK 564 Query: 213 QVAAAEVLKRE 223 AA L++ Sbjct: 565 AYAALSALEKL 575 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ + SK+ A+ A +VL+ G+ T Sbjct: 402 QLKPGLQYKLISQTGPVHAPIFTMSVEVDDKT-FEASGPSKKTAKLHVAVKVLQDMGLPT 460 >gi|514260|gb|AAA19961.1| dsRNA-binding protein 4F.2 [Xenopus laevis] Length = 800 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 R K + E + G+ +Y++ +G HD RF + VE+ G+ QG +K+ A+ Sbjct: 420 LTRHGKNPVMELNEKRRGL--KYELISETGGSHDKRFIMEVEVDGVK-FQGNGSNKKVAK 476 Query: 213 QVAAAEVLKRE 223 AA L++ Sbjct: 477 AYAALSALEKL 487 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ + SK+ A+ A +VL+ G+ T Sbjct: 314 QLKPGLQYKLISQTGPVHAPIFTMSVEVDDKT-FEASGPSKKTAKLHVAVKVLQDMGLPT 372 >gi|50897083|dbj|BAD34722.1| Dicer-related RNase III protein Dcr1p [Tetrahymena thermophila] Length = 1450 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 60/204 (29%), Gaps = 62/204 (30%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHS---------------------------------- 35 + I Y F N LL++ THSS Sbjct: 1157 QNSINYKFNNIGLLQQVFTHSSYKQDMVCSDLNKIFGTLEKSLNDFITEIQKTEKRQSFI 1216 Query: 36 --YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 S + L FLG I ++ L+ + + EL + + +T S ++ + L Sbjct: 1217 QLNDVSNDVLSFLGSIIFSQIVLKRLYTRYSQSNPNELDIFMEIICCEQTKSFLSAKFKL 1276 Query: 94 ASFIRVS----------------------SDLRKDVCSFMT--SIQADVVESLIAALYLD 129 + R ++ SI + + +SL+ A+Y+D Sbjct: 1277 DQYFIYGIQYQQIFQKINHAANLKRQQNIQSFRNIATNYNKDISILSQLFDSLVGAIYID 1336 Query: 130 --GGIEVAGTFVDKYWKQRALKSG 151 E F ++ + + Sbjct: 1337 LQQDFEKTSDFFNQNQHIQLIIKD 1360 >gi|301171314|ref|NP_001180330.1| interleukin enhancer-binding factor 3-B [Xenopus laevis] gi|50414914|gb|AAH77828.1| Unknown (protein for MGC:80491) [Xenopus laevis] Length = 698 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 R K + E + G+ +Y++ +G HD RF + VE+ G+ QG +K+ A+ Sbjct: 518 LTRHGKNPVMELNEKRRGL--KYELISETGGSHDKRFIMEVEVDGVK-FQGNGSNKKVAK 574 Query: 213 QVAAAEVLKRE 223 AA L++ Sbjct: 575 AYAALSALEKL 585 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ + SK+ A+ A +VL+ G+ T Sbjct: 412 QLKPGLQYKLISQTGPVHAPIFTMSVEVDDKT-FEASGPSKKTAKLHVAVKVLQDMGLPT 470 >gi|168043507|ref|XP_001774226.1| double-stranded RNA binding protein [Physcomitrella patens subsp. patens] gi|162674494|gb|EDQ61002.1| double-stranded RNA binding protein [Physcomitrella patens subsp. patens] Length = 683 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE A P Y T RSGP H P FT VE++ ++ + +K+ AE+ AA Sbjct: 153 KNLLQETAQRAGVSLPVYATT-RSGPGHLPVFTCTVEVANMSFSGEAAKTKKQAEKNAAM 211 Query: 218 EV 219 Sbjct: 212 AA 213 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212 K +LQE A P Y R GPDH PRF V +G + R AE Sbjct: 66 YKNQLQELAQRSCFNLPAYACI-REGPDHAPRFKATVNFNGEVFES---PNYCNTLRQAE 121 Query: 213 QVAAAEVLK 221 AA L Sbjct: 122 HAAAEVALN 130 >gi|307169155|gb|EFN61971.1| SON protein [Camponotus floridanus] Length = 883 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E+ K P Y++ F GPDH F V+++G+ + +K+ A+ Sbjct: 809 KHPVSLLGEYCSKKKLGAPVYELCFECGPDHRKNFLFKVKVNGIEYKPSVASPNKKQAKA 868 Query: 214 VAAAEVLKREGIW 226 AA L+ G+ Sbjct: 869 EAAQICLQSLGLL 881 >gi|190690921|gb|ACE87235.1| protein kinase, interferon-inducible double stranded RNA dependent activator protein [synthetic construct] Length = 313 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H + + + G SK Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYATICRLESF-METGKGASK 177 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 178 KQAKRNAAEKFLAK 191 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ H P FT V + + G SK+ A+ Sbjct: 33 KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90 Query: 215 AAAEVLK 221 AA + Sbjct: 91 AAEAAIN 97 >gi|302826370|ref|XP_002994673.1| hypothetical protein SELMODRAFT_432577 [Selaginella moellendorffii] gi|300137177|gb|EFJ04260.1| hypothetical protein SELMODRAFT_432577 [Selaginella moellendorffii] Length = 176 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 53/179 (29%), Gaps = 35/179 (19%) Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-------------- 111 G L+ ++ V+ + +++ L ++ Sbjct: 1 LPPGTLTDLRSAAVNNKWFARLVVRHGLHQHLQHGLVELDCEIRKFVQNVKEKPDASCFE 60 Query: 112 ----TSIQADVVESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA 165 + D++ES+ A+++D ++ + V + R L E Sbjct: 61 DLSAPKVLGDLLESITGAIFVDTNFDLERLWRVVLPLLSP-LVTPATLRFHPVHILMELC 119 Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAEQVAAAEVL 220 K ++ + V V + + S +++A+ AA ++L Sbjct: 120 ARKGMKVSFFRTEATTT-------EVRVTFGEESLVE---TSQEKPRKSAKIDAALKML 168 >gi|195037815|ref|XP_001990356.1| GH18282 [Drosophila grimshawi] gi|193894552|gb|EDV93418.1| GH18282 [Drosophila grimshawi] Length = 833 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEV 219 L E P+Y + SGP H F VEI+G + +K+ A+ AA Sbjct: 764 LNELTSKNRWTPPQYTLRGDSGPSHSRMFLFSVEINGQSYTPAQSCNNKKEAKMNAAKLC 823 Query: 220 LKREGIW 226 L+ GI Sbjct: 824 LRALGIL 830 >gi|326510101|dbj|BAJ87267.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 304 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215 K++LQ +A + P Y R+GP H P F V I G D + + AE A Sbjct: 114 YKSQLQVYAQKRHKDLPSYDTI-RNGPPHAPLFRSTVTIDGRTFESPQDYHTTKEAEFAA 172 Query: 216 AAEVL 220 A L Sbjct: 173 ARVAL 177 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 10/78 (12%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-----APAQ 202 + + + K +LQ +A + P+Y+ T GP H P F V I G Q Sbjct: 198 ISLPGIQINHKLQLQIYAQKRGKQLPKYRRTQE-GPSHAPLFKSTVTIDGQTFESPQYCQ 256 Query: 203 GMDCSKRAAEQVAAAEVL 220 + + +E AA L Sbjct: 257 ----TIKESENAAANLAL 270 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 7/72 (9%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-----AQGMDCSKRAA 211 K +L + + P+Y GP H RF V ++G G +K A Sbjct: 28 FKAQLNQLCQQRRWPAPDYA-HRSEGPAHLLRFRATVAVNGEVYHSPDDGGGSGTAK-EA 85 Query: 212 EQVAAAEVLKRE 223 +AA +R Sbjct: 86 HNLAAKAAFERL 97 >gi|158186644|ref|NP_001103377.1| staufen RNA binding protein homolog 1 isoform 2 [Rattus norvegicus] gi|9755163|gb|AAF98177.1|AF290989_1 staufen isoform Stau-I6 [Rattus norvegicus] gi|74353677|gb|AAI01859.1| Stau1 protein [Rattus norvegicus] gi|149042853|gb|EDL96427.1| staufen RNA binding protein homolog 1 (Drosophila) [Rattus norvegicus] Length = 489 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G +K+ A++ Sbjct: 197 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGAGTNKKVAKRN 255 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 256 AAENMLEILG 265 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 103 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 160 Query: 223 E 223 Sbjct: 161 L 161 >gi|51859122|gb|AAH81755.1| Stau1 protein [Rattus norvegicus] Length = 554 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G +K+ A++ Sbjct: 262 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGAGTNKKVAKRN 320 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 321 AAENMLEILG 330 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E A + ++V SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 168 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 225 Query: 223 E 223 Sbjct: 226 L 226 >gi|149751348|ref|XP_001497601.1| PREDICTED: adenosine deaminase, RNA-specific [Equus caballus] Length = 1145 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ T L E H K G + E+++ R GP HDP+F V + SK+ A+Q+ Sbjct: 558 KNPVTTLLECVH-KLGSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKVAKQM 616 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 617 AAEEAMKAL 625 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V ISG SK+ A+Q Sbjct: 447 KNPISGLLEYAQ-FASQTCEFNLIEQSGPPHEPRFKFQVVISGREFPPAEAGSKKVAKQD 505 Query: 215 AAAEVL 220 AA + + Sbjct: 506 AAMKAM 511 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 676 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 734 Query: 221 K 221 + Sbjct: 735 R 735 >gi|301608714|ref|XP_002933926.1| PREDICTED: interferon-induced, double-stranded RNA-activated protein kinase [Xenopus (Silurana) tropicalis] Length = 534 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 D + L ++ K E+++ + G HDP FTV + I +G SK+AAE++A Sbjct: 3 DPQVVLNKFCARKNLQY-EFRLISKEGSPHDPLFTVHLFIKNEMFGEGQGKSKKAAEKIA 61 Query: 216 AA---EVLKR 222 A L+ Sbjct: 62 ARIGLAALQN 71 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + L E K ++ R GPDH+P+F V E++ +G +K+ A + A Sbjct: 117 NYIGILNELCQKKSWSR-NFRDVDRYGPDHEPKFYCVAEVNKREYPEGWGKNKKQARKKA 175 Query: 216 AAEVLK 221 A L+ Sbjct: 176 AFLALR 181 >gi|242766587|ref|XP_002341200.1| RNAse III, putative [Talaromyces stipitatus ATCC 10500] gi|218724396|gb|EED23813.1| RNAse III, putative [Talaromyces stipitatus ATCC 10500] Length = 142 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 56/128 (43%), Gaps = 14/128 (10%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +++ GY F ++SLL +A+ + + ++ + L G IL + I + Sbjct: 12 VQAIQEITGYTFNDQSLLSEAVEAADFRN--KDGNKDLALPGGAILKVFIIMEGRQRHQN 69 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 ++ S ++ A EL L +I+ ++ + ++ S A +E++I A Sbjct: 70 ---------RKTIASNANLAKKAVELGLKDYIQ-NNPAQGNLISQGP--LATAMEAIIGA 117 Query: 126 LYLDGGIE 133 +Y+D + Sbjct: 118 IYIDSDRD 125 >gi|221361575|emb|CAX18336.1| dicel-like 1 [Nicotiana benthamiana] Length = 79 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%) Query: 46 LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 +GD +L LI+ LF + G L+ + V+ E ++VA + L +R S + Sbjct: 1 VGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHGLHLHLRHGSSALE 60 Query: 106 DVCSFMTS 113 S Sbjct: 61 KQIRDFVS 68 >gi|159123457|gb|EDP48576.1| hypothetical protein AFUB_080110 [Aspergillus fumigatus A1163] Length = 620 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 17/165 (10%) Query: 1 MSALRYSTL-EKRIGYAFANRSLLEKALTHSSISHSYQES------YERLEFLGDRILGL 53 M+ + + + R+GY F N ++L ALT + E RL LG+ ++ Sbjct: 1 MATTKDARFVQDRLGYRFKNEAILRLALT--AAGKGGAEDGANKRGNSRLAHLGNFLMQF 58 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 L++ D + S SA+ C++VA + +L ++ S Sbjct: 59 LLA--WIGFGDDRTRADTSTLATRFNSADHCAKVAEKAELDRCLKY----DMRSGSRSAV 112 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158 + V +++AA+++D + + F D + Sbjct: 113 VLRKAVNAIMAAIFVDS--QDIHQVLMAVTNLGLFGHDDFGVDPR 155 >gi|260785891|ref|XP_002587993.1| hypothetical protein BRAFLDRAFT_125391 [Branchiostoma floridae] gi|229273149|gb|EEN44004.1| hypothetical protein BRAFLDRAFT_125391 [Branchiostoma floridae] Length = 376 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 158 KTE--LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 KT L + P+YK+ +GP H FT+ + ++ S + A+ A Sbjct: 74 KTPMCLINELARYNKIQPQYKLITETGPAHQKTFTISLTLNDKTW-SAEGSSLKKAQHAA 132 Query: 216 AAEVL 220 A++ L Sbjct: 133 ASKAL 137 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K ++ ++V SGP H F ++ A+G K+ +++ AA +VL++ Sbjct: 290 IARKRNMSVSFEVVKESGPPHMKTFVTSCKVGDFV-AEGEGNGKKVSKKRAAQKVLEQLK 348 Query: 225 IW 226 + Sbjct: 349 VL 350 Score = 40.1 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V + I G +++ A AAA+ LK Sbjct: 217 KTFYVSLTIGNRE-FIGEGRTRQQARHNAAAKALK 250 >gi|50294528|ref|XP_449675.1| hypothetical protein [Candida glabrata CBS 138] gi|49528989|emb|CAG62651.1| unnamed protein product [Candida glabrata] Length = 358 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 66/220 (30%), Gaps = 36/220 (16%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA---- 94 L G +L ++ L + L+ +S +S + + + + Sbjct: 118 DNHGLNIFGKNLLTYHVTQYLVKRYPRLPVVVLNAAVDSYLSQRVLASIGKSWGIESEDS 177 Query: 95 ----SF-------IRVSS--------------DLRKDVCSFMTSIQADVVESLIAALYLD 129 + I + L + A V S+IAAL+ Sbjct: 178 PVVNRYLANEPYEITLGKLRFFNNTLKREDGLQLITSKNFSEEAAYALAVRSIIAALWAS 237 Query: 130 ----GGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + A F+ + R L K + + EL + P K+ SG Sbjct: 238 TQNTAKPDSAIHFIKDHILSRKLDVTKIFQFENPTRELAVLCRRENLDLPVSKLIAESGR 297 Query: 184 -DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F V V +G S + A+ AA++ L + Sbjct: 298 LSKAPVFIVGVFSGEEKLGEGYGSSLKEAKARAASDALLK 337 >gi|224130800|ref|XP_002328379.1| predicted protein [Populus trichocarpa] gi|222838094|gb|EEE76459.1| predicted protein [Populus trichocarpa] Length = 159 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y RSGP H P F+ VE++G++ +K+ A++ AA Sbjct: 88 YKNLLQETAHRAGLKLPVYTTI-RSGPGHVPVFSCNVELAGMSFTGESARTKKQAQKNAA 146 Query: 217 AE---VLKR 222 LKR Sbjct: 147 MAAWSALKR 155 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215 K +LQE A P Y R GPDH PRF V +G S R AE A Sbjct: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKSTVNFNGETFESPTFYSTLRLAEHAA 60 Query: 216 AAEVLK 221 A L Sbjct: 61 AEVALN 66 >gi|195454350|ref|XP_002074202.1| GK12745 [Drosophila willistoni] gi|194170287|gb|EDW85188.1| GK12745 [Drosophila willistoni] Length = 845 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 1/82 (1%) Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 A+ + L E P+Y + +GP H F VEI+G Sbjct: 761 PAVPQNNQDKHPVCVLNELTSKNKWTPPQYVLQQNTGPAHMRTFLFSVEINGQKYTPSNG 820 Query: 206 -CSKRAAEQVAAAEVLKREGIW 226 SK+ A+ AA L+ G+ Sbjct: 821 CNSKKEAKLNAAKLCLQALGLL 842 >gi|147906536|ref|NP_001091256.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Xenopus laevis] gi|121308150|emb|CAM07152.1| double stranded RNA activated protein kinase 1 [Xenopus laevis] Length = 578 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + K +L + ++K +GP HDPRFT V ++G +G D K+ AE +A Sbjct: 5 NVKGQLISFCTKNGLSY-QFKKVEATGPSHDPRFTFQVFVNGEKLGEGQDKKKKGAECMA 63 Query: 216 AAEVL 220 A L Sbjct: 64 AKMAL 68 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 2/65 (3%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + L E + R G H P F I + +K+ A++ A Sbjct: 118 NYVGILHELCQKH--TLIVTFLDERHGQPHIPEFFCKAVIGKEEFPKAKGKNKKEAKRKA 175 Query: 216 AAEVL 220 A L Sbjct: 176 AHLAL 180 >gi|72009988|ref|XP_781832.1| PREDICTED: similar to adenosine deaminase [Strongylocentrotus purpuratus] gi|115934907|ref|XP_001189241.1| PREDICTED: similar to adenosine deaminase [Strongylocentrotus purpuratus] Length = 696 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +K ++GP H P F V VE++ +G SK+ A AA Sbjct: 83 PKNALMQL--NEIKPGLVFKTQSQTGPVHAPTFVVSVEVNDQ-LFEGTGRSKKTARMHAA 139 Query: 217 AEVLK 221 LK Sbjct: 140 ELALK 144 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 6/72 (8%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K ++ L E +Y++ SG H FT+ + I G QG +K Sbjct: 227 KEQPSGKNPVMILNEL-----KPGQKYEMQEESGQSHSKNFTMSLTIDGKN-FQGTGRNK 280 Query: 209 RAAEQVAAAEVL 220 + A+Q AA L Sbjct: 281 KLAKQRAAQAAL 292 >gi|270003897|gb|EFA00345.1| hypothetical protein TcasGA2_TC003184 [Tribolium castaneum] Length = 1222 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K+ L ++ P+++V +GP H RF V I G + G +K+ A+ Sbjct: 3 DIKSFLHQFCQKTKKEQPQFEV-RPTGPKHRQRFLCEVRIDGYSYVGAGNSTNKKDAQSN 61 Query: 215 AAAEV---LKREGI 225 AA + L REGI Sbjct: 62 AARDFVSYLVREGI 75 Score = 41.6 bits (97), Expect = 0.084, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGM--DCSKRA 210 +AK++L ++ + + +YK T GPDH F + G +K+ Sbjct: 160 NAKSKLHQFMQSN-KIHADYKYTQV-GPDHSRTFVAEMSFYVKQLGRTITGRDSGSNKQT 217 Query: 211 AEQVAAAEVLKRE 223 A + A ++++ Sbjct: 218 ASKSCALSIIRQL 230 >gi|91078338|ref|XP_973454.1| PREDICTED: similar to maleless protein [Tribolium castaneum] Length = 1220 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K+ L ++ P+++V +GP H RF V I G + G +K+ A+ Sbjct: 3 DIKSFLHQFCQKTKKEQPQFEV-RPTGPKHRQRFLCEVRIDGYSYVGAGNSTNKKDAQSN 61 Query: 215 AAAEV---LKREGI 225 AA + L REGI Sbjct: 62 AARDFVSYLVREGI 75 Score = 41.6 bits (97), Expect = 0.084, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGM--DCSKRA 210 +AK++L ++ + + +YK T GPDH F + G +K+ Sbjct: 160 NAKSKLHQFMQSN-KIHADYKYTQV-GPDHSRTFVAEMSFYVKQLGRTITGRDSGSNKQT 217 Query: 211 AEQVAAAEVLKRE 223 A + A ++++ Sbjct: 218 ASKSCALSIIRQL 230 >gi|254582945|ref|XP_002499204.1| ZYRO0E06490p [Zygosaccharomyces rouxii] gi|238942778|emb|CAR30949.1| ZYRO0E06490p [Zygosaccharomyces rouxii] Length = 380 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 35/219 (15%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD------ 92 L G +L ++ L + L+ ++ + + + V + Sbjct: 141 DNHGLNIFGKNLLTYHVTRKLMTKYPRLPTVILNAAVDAYICEDVLAGVGKSWGVETEKT 200 Query: 93 --LASFIR-------VSS-----------DLRKDVCSFM---TSIQADVVESLIAALY-- 127 L +++ + D + + S S + + S+I AL+ Sbjct: 201 PVLERYLKEEPIQITLGKLRFYNNSLNQEDGIESISSLNFSEKSAYSLAIRSIIGALWAC 260 Query: 128 -LDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + A F+D + R L K + EL + P ++ SG Sbjct: 261 TQETNPQYAFQFIDDHILSRKLDISKMFQFEQPTRELAALCRREGLQKPVSRLLAESGRH 320 Query: 185 -HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F V V +G S + + AA + L + Sbjct: 321 SKAPVFIVGVFSGDEKLGEGFGSSLKEGKARAATDALMK 359 >gi|321468306|gb|EFX79291.1| hypothetical protein DAPPUDRAFT_24493 [Daphnia pulex] Length = 254 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE + P Y + +G H+ F + + G+ SK+ A++ AA + Sbjct: 93 LQELCISHRWAPPSYVLEGENGLPHEREFVITCVVENHQE-IGVGKSKKLAKRQAAYRMQ 151 Query: 221 KRE 223 + Sbjct: 152 MKL 154 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE + K G+ P+Y + G H+P F V + G A G S Sbjct: 5 PVSLLQE-LYVKKGINPKYDLIQIEGAIHEPTFKYRVSV-GELVAMGSGQS 53 >gi|198437680|ref|XP_002131410.1| PREDICTED: similar to mitochondrial ribosomal protein L44 [Ciona intestinalis] Length = 340 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 71/225 (31%), Gaps = 15/225 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNH 62 + + R+ N LL ALT + E Y +L G + + +S + Sbjct: 84 ELTAFKNRLDIEVPN-ELLVSALTEPLFNEPSTEDTGYSKLLKDGSKFVEEFVSHYVKEA 142 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F S + L+ + +A L +++ + A+ + + Sbjct: 143 FPFLTSEGRSSICDFLLLDSNIAYLALNLGYNDLLQL------TGLRSSEKVLAESLVAS 196 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKV 177 I A+ L G A F+ + + + K L E P+ ++ Sbjct: 197 IEAINLSEGPVAAAKFILNFLVPQLVGKDIIDDIWKPSNPMALLTESFKISGKPAPQARL 256 Query: 178 TFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + G P + V + A+ S AE AA LK Sbjct: 257 IQQCGVNTVTPIYYVGLFSGKDLIAKSGAESIVLAETDAAKLALK 301 >gi|149050635|gb|EDM02808.1| rCG61784 [Rattus norvegicus] Length = 513 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +L +++ V YK +GP HD RFT V I +G SK+ A+ AA Sbjct: 12 KLNKYSQIH-KVKIIYKEISVTGPPHDRRFTFQVIIEEREFPEGEGRSKQEAKNNAAKLA 70 Query: 220 LK 221 ++ Sbjct: 71 VE 72 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 16/36 (44%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF +I G +K+ A+Q+AA ++ Sbjct: 125 RFICKCKIGQTTYGTGFGANKKEAKQLAAKNAYQKL 160 >gi|156371296|ref|XP_001628700.1| predicted protein [Nematostella vectensis] gi|156215684|gb|EDO36637.1| predicted protein [Nematostella vectensis] Length = 423 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + + E A A PEY V +GP H F V +++ + +GM + + A+ AA Sbjct: 6 PISLMNELAKANNL-NPEYNVIEETGPAHKKTFKVQLKLGDIGIWEGMANNIKLAKHKAA 64 Query: 217 AEVLKREGI 225 + L+ G+ Sbjct: 65 EKGLENCGL 73 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 + L + + P Y + G FT+ V++ G A G+ +K+ A++ AA Sbjct: 344 SILGQILQRRHDPAPVYSLVEERGHMMKKEFTLRVKV-GSHEALGVGPNKKTAKKNAAEA 402 Query: 219 VLKREG 224 +L+ G Sbjct: 403 MLQLMG 408 Score = 41.2 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP H +F + + G +G K+ A++ AA +L Sbjct: 263 GPAHMKKFKIKATV-GPYMTEGEGNRKKDAKKEAAVRML 300 >gi|302819687|ref|XP_002991513.1| hypothetical protein SELMODRAFT_429800 [Selaginella moellendorffii] gi|300140715|gb|EFJ07435.1| hypothetical protein SELMODRAFT_429800 [Selaginella moellendorffii] Length = 850 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 71/222 (31%), Gaps = 57/222 (25%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +LE ++ Y F NRSLL +A+TH+S + Y+ G L I + N Sbjct: 648 SLESLEHKLQYKFQNRSLLVEAITHASQPNCLL-CYQH----GSVELDCEIRKFVQN--- 699 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 V + + +L + D++ES+ Sbjct: 700 --------------VKEKPDASCFDDLS------------------SPKVLGDLLESITG 727 Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+++D ++ + V + R L E K ++ + Sbjct: 728 AIFVDTNFDLEKLWRVVLPLLSP-LVTPATLRFHPVRILMELCARKGMKVSFFRTEATTT 786 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCS----KRAAEQVAAAEVL 220 V V + + S +++A+ AA ++L Sbjct: 787 -------EVRVTFGEESLVE---TSQEKPRKSAKIDAALKML 818 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +A+T S + SYE LE LGD L +++ LF +D EG+LS R N+ + + Sbjct: 573 EAIT--SKKCHEEFSYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRNTYATKNS 629 >gi|9506993|ref|NP_062208.1| interferon-induced, double-stranded RNA-activated protein kinase [Rattus norvegicus] gi|81910551|sp|Q63184|E2AK2_RAT RecName: Full=Interferon-induced, double-stranded RNA-activated protein kinase; AltName: Full=Eukaryotic translation initiation factor 2-alpha kinase 2; Short=eIF-2A protein kinase 2; AltName: Full=Interferon-inducible RNA-dependent protein kinase; AltName: Full=Protein kinase RNA-activated; Short=PKR gi|468373|gb|AAA61926.1| RNA-dependent initiation factor-2 kinase [Rattus norvegicus] Length = 513 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +L +++ V YK +GP HD RFT V I +G SK+ A+ AA Sbjct: 12 KLNKYSQIH-KVKIIYKEISVTGPPHDRRFTFQVIIEEREFPEGEGRSKQEAKNNAAKLA 70 Query: 220 LK 221 ++ Sbjct: 71 VE 72 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 16/36 (44%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF +I G +K+ A+Q+AA ++ Sbjct: 125 RFICKCKIGQTTYGTGFGANKKEAKQLAAKNAYQKL 160 >gi|291397874|ref|XP_002715382.1| PREDICTED: adenosine deaminase, RNA-specific [Oryctolagus cuniculus] Length = 1150 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+ Sbjct: 560 KSPVTTLLECVH-KLGSSCEFRLLSKEGPAHDPKFQYCVAVGSQTFPTASAPSKKVAKQM 618 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 619 AAEEAMKAL 627 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V ISG SK+ A+Q Sbjct: 449 KNPISGLLEYAQ-FASQTCEFNLIEQSGPPHEPRFKFQVVISGREFPPAEAGSKKVAKQD 507 Query: 215 AAAEVL 220 AA + + Sbjct: 508 AAMKAM 513 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 678 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 736 Query: 221 K 221 + Sbjct: 737 R 737 >gi|169858496|ref|XP_001835893.1| hypothetical protein CC1G_02981 [Coprinopsis cinerea okayama7#130] gi|116503063|gb|EAU85958.1| hypothetical protein CC1G_02981 [Coprinopsis cinerea okayama7#130] Length = 299 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 10/136 (7%) Query: 19 NRSLLEKALTHSSIS------HSYQESYERLEFLGDRILGLLI-STLLFNHFDSAKEGEL 71 + LL TH S+ + +RL LG +L +++ + S +L Sbjct: 13 DVELLLDVFTHKSLRMTGAPLNEDYGDTDRLAELGAYVLQMVVATHWFHAKNPSLPADQL 72 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL--D 129 S R +S T L + +R++ + + T ++ V E+ + A+Y Sbjct: 73 SARIKESLSDTTVDTWMNAYGLKTKLRIAPSEMERSMNSSTEMRK-VFETYVGAVYFRNR 131 Query: 130 GGIEVAGTFVDKYWKQ 145 G++ ++ + Sbjct: 132 NGLKEIQQWISRLIDP 147 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 A+ GV Y +SGP H P + V ++G +G S++ A++ AA + G Sbjct: 240 AQNGVHVTYPA-EQSGPPHAPLWHVRCCLNGKEYGRGTGRSQKIAKEEAARQAWTAMG 296 >gi|320167293|gb|EFW44192.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 326 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 68/205 (33%), Gaps = 20/205 (9%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L++AL + +Q +R+ LG L + +F F L S++ A Sbjct: 104 LKRALM---SNDKWQSPSQRMSALGQGYFHALFAEHVFQRFPRLPGPALQSITESVMDAP 160 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 + SQ AR L F + + ++IAA+ GI VD Sbjct: 161 SISQYARAFGLHQF------------AQSDLLLRSSFFAVIAAIVEVKGIAGVRQIVDDV 208 Query: 143 WKQRALKSGK----FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISG 197 ++ + + + LQ +K+ +G P F V Sbjct: 209 AQKEFAAARPADSILITNPQRLLQSCLEDANQEPLTFKLHKEAGRTTATPTFVVGAYSGS 268 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKR 222 A+G S A++ A+ L + Sbjct: 269 QLLAEGTAASMSKAKREASRNSLTK 293 >gi|308489344|ref|XP_003106865.1| hypothetical protein CRE_17085 [Caenorhabditis remanei] gi|308252753|gb|EFO96705.1| hypothetical protein CRE_17085 [Caenorhabditis remanei] Length = 725 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + + + L + +K P +++ G F + V+ +G +KR A+ Sbjct: 402 HQINPVSRLIQVIQSKNQEHPTFELVAEHGASKYKEFVIRVKCGDEMR-EGRGPNKRLAK 460 Query: 213 QVAAAEVLKREG 224 + AA +L+ G Sbjct: 461 RAAAEAMLETIG 472 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 23/47 (48%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y + SGP H FTV + ++ +G S + A+Q +A LK Sbjct: 84 YDLQDESGPAHKKLFTVKLVLTPEESFEGSGPSIKRAQQASAEAALK 130 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLK 221 + ++V GP HD ++ V A G K+ A+Q A A+++K Sbjct: 296 LKLNVVFEVLKEEGPPHDRQYVVRCAFVTSAQVVKAEGIGRGKKKKIAQQEACAQLIK 353 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 17/30 (56%) Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V+V I G A G+ + A+Q AAA+ L Sbjct: 221 VMVHIDGKPVATGVGETYPLAKQDAAAKAL 250 >gi|332256664|ref|XP_003277436.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 5 [Nomascus leucogenys] Length = 674 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|332256660|ref|XP_003277434.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 3 [Nomascus leucogenys] Length = 741 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|332256658|ref|XP_003277433.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 2 [Nomascus leucogenys] Length = 729 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 107 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 163 Query: 217 AEVLK 221 + L+ Sbjct: 164 EKALR 168 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 270 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 321 >gi|311270262|ref|XP_003132836.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific editase 1-like [Sus scrofa] Length = 816 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 241 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 297 Query: 217 AEVLK 221 + L+ Sbjct: 298 EKALR 302 >gi|297708140|ref|XP_002830837.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2 [Pongo abelii] Length = 674 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|297708138|ref|XP_002830836.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1 [Pongo abelii] Length = 740 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 118 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 174 Query: 217 AEVLK 221 + L+ Sbjct: 175 EKALR 179 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 281 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 332 >gi|296232315|ref|XP_002761540.1| PREDICTED: double-stranded RNA-specific editase 1 [Callithrix jacchus] Length = 740 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 118 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 174 Query: 217 AEVLK 221 + L+ Sbjct: 175 EKALR 179 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 281 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 332 >gi|239985464|ref|NP_001155267.1| RNA-specific adenosine deaminase B1 isoform 4 [Pan troglodytes] Length = 674 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|239985462|ref|NP_001155266.1| RNA-specific adenosine deaminase B1 isoform 2 [Pan troglodytes] Length = 741 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|239985460|ref|NP_001155265.1| RNA-specific adenosine deaminase B1 isoform 3 [Pan troglodytes] Length = 714 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|239985458|ref|NP_001122104.2| RNA-specific adenosine deaminase B1 isoform 1 [Pan troglodytes] Length = 701 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|119629763|gb|EAX09358.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform CRA_b [Homo sapiens] Length = 700 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + +Y SG H F + V + G +G +K+ A+ Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285 >gi|41351285|gb|AAH65545.1| Adenosine deaminase, RNA-specific, B1 (RED1 homolog rat) [Homo sapiens] Length = 701 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + +Y SG H F + V + G +G +K+ A+ Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285 >gi|21954729|gb|AAM83100.1|AF525422_1 adenosine deaminase ADAR2 [Homo sapiens] gi|23266659|gb|AAN10291.1| adenosine deaminase [Homo sapiens] Length = 729 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 107 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 163 Query: 217 AEVLK 221 + L+ Sbjct: 164 EKALR 168 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + +Y SG H F + V + G +G +K+ A+ Sbjct: 270 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 313 >gi|22506829|gb|AAM97654.1| adenosine deaminase ADAR2 variant [Homo sapiens] Length = 701 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + +Y SG H F + V + G +G +K+ A+ Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285 >gi|2114493|gb|AAB58300.1| RNA editase [Homo sapiens] Length = 741 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + +Y SG H F + V + G +G +K+ A+ Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285 >gi|119629762|gb|EAX09357.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform CRA_a [Homo sapiens] Length = 729 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 107 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 163 Query: 217 AEVLK 221 + L+ Sbjct: 164 EKALR 168 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + +Y SG H F + V + G +G +K+ A+ Sbjct: 270 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 313 >gi|7669479|ref|NP_056649.1| double-stranded RNA-specific editase 1 isoform 3 [Homo sapiens] gi|2039302|gb|AAC51242.1| dsRNA adenosine deaminase DRADA2c [Homo sapiens] gi|119629766|gb|EAX09361.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform CRA_e [Homo sapiens] Length = 714 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + +Y SG H F + V + G +G +K+ A+ Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285 >gi|237681091|ref|NP_001153702.1| double-stranded RNA-specific editase 1 isoform 7 [Homo sapiens] gi|71274097|dbj|BAE16329.1| adenosine deaminase acting on RNA type2d [Homo sapiens] Length = 674 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + +Y SG H F + V + G +G +K+ A+ Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285 >gi|4379098|emb|CAB09392.1| RNA editing deaminase 1 [Homo sapiens] Length = 699 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + +Y SG H F + V + G +G +K+ A+ Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285 >gi|7669477|ref|NP_056648.1| double-stranded RNA-specific editase 1 isoform 2 [Homo sapiens] gi|2829669|sp|P78563|RED1_HUMAN RecName: Full=Double-stranded RNA-specific editase 1; AltName: Full=RNA-editing deaminase 1; AltName: Full=RNA-editing enzyme 1; AltName: Full=dsRNA adenosine deaminase gi|1707502|emb|CAA67611.1| double-stranded RNA-specific editase [Homo sapiens] gi|1766056|gb|AAB61687.1| double stranded RNA-specific editase 1 hRED1-L [Homo sapiens] gi|2039300|gb|AAC51241.1| dsRNA adenosine deaminase DRADA2b [Homo sapiens] gi|7717441|emb|CAB90493.1| human dsRNA adenosine deaminase DRADA2b, EC 3.5 [Homo sapiens] gi|119629765|gb|EAX09360.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform CRA_d [Homo sapiens] Length = 741 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + +Y SG H F + V + G +G +K+ A+ Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285 >gi|4501919|ref|NP_001103.1| double-stranded RNA-specific editase 1 isoform 1 [Homo sapiens] gi|1707504|emb|CAA67762.1| double-stranded RNA-specific editase [Homo sapiens] gi|1766054|gb|AAB61686.1| double stranded RNA-specific editase 1 hRED1-S [Homo sapiens] gi|2039298|gb|AAC51240.1| dsRNA adenosine deaminase DRADA2a [Homo sapiens] gi|71274091|dbj|BAE16326.1| adenosine deaminase acting on RNA type2a [Homo sapiens] gi|71274093|dbj|BAE16327.1| adenosine deaminase acting on RNA type2a [Homo sapiens] gi|71274095|dbj|BAE16328.1| adenosine deaminase acting on RNA type2a [Homo sapiens] gi|119629764|gb|EAX09359.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform CRA_c [Homo sapiens] Length = 701 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + +Y SG H F + V + G +G +K+ A+ Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285 >gi|332256656|ref|XP_003277432.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 1 [Nomascus leucogenys] gi|332256662|ref|XP_003277435.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 4 [Nomascus leucogenys] Length = 701 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|328865213|gb|EGG13599.1| putative RNA helicase [Dictyostelium fasciculatum] Length = 760 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 AK LQE+ P Y VT + DH +F V++ G +K+ AE+ AA Sbjct: 7 AKNSLQEYCQKNKLTLPTYDVT-TTCQDHAKKFMCKVKVQGHQYNSLWMDNKKDAEKHAA 65 Query: 217 AEVL 220 L Sbjct: 66 TVAL 69 >gi|297287382|ref|XP_002803150.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2 [Macaca mulatta] Length = 740 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 118 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 174 Query: 217 AEVLK 221 + L+ Sbjct: 175 EKALR 179 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 281 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 332 >gi|15807272|ref|NP_296002.1| hypothetical protein DR_2281 [Deinococcus radiodurans R1] gi|6460094|gb|AAF11833.1|AE002060_12 hypothetical protein DR_2281 [Deinococcus radiodurans R1] Length = 164 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + +AK +L + TP ++ GP H+ F V V SG A +K+ AE Sbjct: 24 YPMNAKGDLIARLVSLGLGTPTFEA-EAHGPAHERTFHVKVWSSGQVIATAEGRTKKDAE 82 Query: 213 QVAAAEVLKRE 223 ++AA L+ Sbjct: 83 RLAAELALREL 93 >gi|297287384|ref|XP_001118216.2| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1 [Macaca mulatta] Length = 674 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|168043471|ref|XP_001774208.1| double-stranded RNA binding protein [Physcomitrella patens subsp. patens] gi|162674476|gb|EDQ60984.1| double-stranded RNA binding protein [Physcomitrella patens subsp. patens] Length = 577 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 6/69 (8%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAA 216 K LQE A P Y T RSGP H P FT VE++ G +K+ AE+ AA Sbjct: 107 KNLLQETAQRAGVSLPVYSTT-RSGPGHLPVFTCTVELA-KMTFSGEAAKTKKQAEKNAA 164 Query: 217 AE---VLKR 222 LK+ Sbjct: 165 MAAWSALKQ 173 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212 K +LQE A P Y R GPDH PRF V +G + R AE Sbjct: 20 YKNQLQELAQRSCINLPAYACI-REGPDHAPRFKATVSFNGEIFES---PNYCNTLRQAE 75 Query: 213 QVAAAEVLK 221 AA L Sbjct: 76 HAAAEVALN 84 >gi|327262381|ref|XP_003216003.1| PREDICTED: interferon-induced, double-stranded RNA-activated protein kinase-like [Anolis carolinensis] Length = 439 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 1/78 (1%) Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 A + + L E+A + E+ + + GPDH P F+ +I G G Sbjct: 104 PAANITAVSTNYISLLNEYALKNKKI-VEFGLESKDGPDHKPVFSQSCKIDGEILGVGTG 162 Query: 206 CSKRAAEQVAAAEVLKRE 223 +K A+ AA ++ Sbjct: 163 NNKNIAKFNAAKMAYEKL 180 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +L E+ EY GP HD FTV V+I + Q +K+ A+ AA Sbjct: 14 KLHEYCQRNRLQL-EYLELDIRGPPHDRIFTVAVQIDKIQYRQCEGKTKKEAKAHAAVLA 72 Query: 220 LK 221 + Sbjct: 73 WE 74 >gi|7770277|gb|AAF69674.1| double-stranded RNA-specific editase [Tetraodon fluviatilis] Length = 1255 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 10/131 (7%) Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------- 154 + + + + L G V + RA+ G + Sbjct: 566 EEMQSGAGSKDKDNGASMNQVTGHLANTSGSAEVAMCVTGTPEGRAVAEGPPQPLSRSLP 625 Query: 155 --RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ + L +++ G E+ +T ++GP HD RF V++ ++ SK+AA Sbjct: 626 GGKNPVSVLMDYSQ-HSGNAIEFIMTGQAGPPHDTRFMYRVKVGENLFSEASAPSKKAAR 684 Query: 213 QVAAAEVLKRE 223 Q+AA E +K Sbjct: 685 QLAAEEAVKEL 695 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 +A + L E+A A+ E ++ +SGP H+P+FT ++ G +K+ + Sbjct: 751 LNNNAVSGLLEYAKARGFAA-EIRLVGQSGPPHEPKFTYQAKLGGRWFPPVCASNKKQGK 809 Query: 213 QVAAAEVLK 221 Q AA L+ Sbjct: 810 QEAADAALR 818 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 ++ + L E+A G E+ + +SGP HDPRF + V ++G S Sbjct: 497 KNPVSGLMEYAQ-FLGQNCEFLLLDQSGPSHDPRFRMQVMLNGRLFPVAEASS 548 >gi|7229534|gb|AAF42866.1|AF225925_1 staufen [Musca domestica] Length = 985 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSG---PDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + T+L EW P +K+ +G +F V V L +G+ SK++A Sbjct: 724 NPITKLVEWCQHNKEKEPIFKIITEAGGKERARQRQFVVEVCTKDLTV-RGVGNSKKSAR 782 Query: 213 QVAAAEVLKREGIWT 227 + AA +L G+ T Sbjct: 783 RNAAQNMLLALGVDT 797 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 8/79 (10%) Query: 151 GKFRRDAKTE-------LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 GK D K+ L ++ +Y++T +GP H RFTV +++ Sbjct: 276 GKESNDFKSSREKTPMCLVNDLARFNKISFQYRLTGENGPAHCKRFTVTLKLGDEEY-MA 334 Query: 204 MDCSKRAAEQVAAAEVLKR 222 + A+ +AA E + + Sbjct: 335 EGFKIKEAQHMAAKEAILK 353 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K + ++K+ GP H FT + G + K+ +++ AA ++L+ Sbjct: 590 KRNLPVDFKILREDGPAHMRTFTTACIV-GQIVTEAEGTGKKISKKKAAQKMLEEL 644 >gi|296806447|ref|XP_002844033.1| conserved hypothetical protein [Arthroderma otae CBS 113480] gi|238845335|gb|EEQ34997.1| conserved hypothetical protein [Arthroderma otae CBS 113480] Length = 156 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 6/124 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E + Y+F ++ L+ +AL+ S +Y + L +GD + L I + Sbjct: 17 EAVEGILDYSFKDKCLVLQALSLPG-SSAYSTGNKGLAQVGDAAVRLHIISEGHQR--GM 73 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 G++S + + ++V + +L I ++ R V S A VE+L+ A+ Sbjct: 74 SRGQISAILGRVSNNNNLAEVGVKKNLGESIFIN---RSQVGSISPGSMATTVEALLGAV 130 Query: 127 YLDG 130 Y+D Sbjct: 131 YIDS 134 >gi|255937045|ref|XP_002559549.1| Pc13g11310 [Penicillium chrysogenum Wisconsin 54-1255] gi|211584169|emb|CAP92200.1| Pc13g11310 [Penicillium chrysogenum Wisconsin 54-1255] Length = 372 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 75/242 (30%), Gaps = 44/242 (18%) Query: 3 ALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + + + L R+ Y + + L + L +S + + L G +L + L Sbjct: 88 SAKLAALHARL-YLPSRLPIETLARTLVDTSADPNPNFNNASLATFGHDLLSYYATEHLI 146 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELD---------------------------- 92 + + + V +T + +ARE Sbjct: 147 CTYPRLPLTVIFAAMYAYVGPKTLAAMAREWGPTHPTARPYETQKNWRKTVTSKIFYDDE 206 Query: 93 LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 ++ + V + S A+ V +++ A+YL G A F ++++ R L + Sbjct: 207 FGDPLKGAKHSAAGVTTEQAS--AEFVRAVMGAIYLHAGRAAAKRFFEQHFLSRHLNISE 264 Query: 153 FR------RDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMD 205 RD L + P KV +G P F V + +G Sbjct: 265 LFNFQAPARD----LTRLCARESFERPVAKVISETGRKSRHPVFVVGIFSGQDKLGEGAG 320 Query: 206 CS 207 S Sbjct: 321 AS 322 >gi|302819689|ref|XP_002991514.1| hypothetical protein SELMODRAFT_429802 [Selaginella moellendorffii] gi|300140716|gb|EFJ07436.1| hypothetical protein SELMODRAFT_429802 [Selaginella moellendorffii] Length = 569 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 57/222 (25%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +LE ++ Y F NRSLL +A+TH+S + Y+ G L I + N Sbjct: 386 SLESLEHKLQYKFQNRSLLVEAITHASQPNCLL-CYQH----GSVELDCEIRKFVQN--- 437 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 V + + +L + D++ES+ Sbjct: 438 --------------VKEKPDASCFEDLS------------------APKVLGDLLESITG 465 Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+++D ++ + V + G R L E + ++ + Sbjct: 466 AIFVDTNFDLEKLWRVVLPLLSP-LVTPGTLRFHPVRILMELCARQGMKVSFFRTEATTT 524 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCS----KRAAEQVAAAEVL 220 V V + + S +++A+ AA ++L Sbjct: 525 -------EVRVTFGEESLVE---TSQEKPRKSAKIDAALKML 556 >gi|297462872|ref|XP_002702377.1| PREDICTED: adenosine deaminase, RNA-specific, B1 (RED1 homolog rat) [Bos taurus] gi|297471374|ref|XP_002685172.1| PREDICTED: adenosine deaminase, RNA-specific, B1 (RED1 homolog rat) [Bos taurus] gi|296490897|gb|DAA33010.1| adenosine deaminase, RNA-specific, B1 [Bos taurus] Length = 748 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 8/94 (8%) Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 LD G F K+R G K L + + +Y + ++GP H P Sbjct: 55 LDEGSNGHAKF---RLKKRRRAPGPAL--PKNALMQL--NEIKPGLQYTLLSQTGPVHAP 107 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F + VE++G +G +K+ A+ AA + L+ Sbjct: 108 LFLMSVEVNGQV-FEGSGPTKKKAKLHAAEKALR 140 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 47/162 (29%), Gaps = 15/162 (9%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE- 120 F +A E L++ + +A+ S A D + + S + + Sbjct: 144 QFPNASEAHLAMGRSLSTNADFTSDQA---DFPDALF--NGFETPDRSEVPFYLGSNGDD 198 Query: 121 --SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 S L L V ++ L E +Y Sbjct: 199 SFSSSGDLSLAAS-PVPAGLAQPPLPGPPPFPPPSGKNPVMILNEL-----RPGLKYDFL 252 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 SG H F + V + G +G +K+ A+ AA L Sbjct: 253 SESGESHAKNFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|170085495|ref|XP_001873971.1| predicted protein [Laccaria bicolor S238N-H82] gi|164651523|gb|EDR15763.1| predicted protein [Laccaria bicolor S238N-H82] Length = 367 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 4/128 (3%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F ++SL +A T SS + + ERL LG L + ++ +LFN K E+S + Sbjct: 50 FTHKSL-RRA-TRSSTNLDDFDDNERLTELGKAALNVAVAHVLFNKRPMLKPSEMSSQHK 107 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 ++S E + +L +R +L + + + + + + +Y + G E Sbjct: 108 HILSDENINNWVTFYNLRMKLRCHPNLYPRLNTPQET--CSIFYAYVGGVYAESGQEAVR 165 Query: 137 TFVDKYWK 144 ++D + Sbjct: 166 EWIDLLVE 173 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 ++ VT EY F SGP H R+TV ++G+ G SK+ A++ AA + G Sbjct: 307 TASQRRVTVEYPAEF-SGPSHAGRWTVKCVVNGIPKGVGTGGSKQVAKEEAARQAYYAMG 365 Query: 225 IWT 227 WT Sbjct: 366 -WT 367 >gi|170042672|ref|XP_001849041.1| ribonuclease iii [Culex quinquefasciatus] gi|167866168|gb|EDS29551.1| ribonuclease iii [Culex quinquefasciatus] Length = 300 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 22/152 (14%) Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L++ ++S V+ + + +L + S+ S+ AD++E+ + ALY+D Sbjct: 109 LTLLWSSQVNNRNQAVICDDLGMTSYAVYSNKQADLKTKER----ADLLEAFLGALYVDK 164 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 G+ A +RA S D LQ V +GP + +T Sbjct: 165 GLNTAKRSPTTGMTRRASCSRAGHSD----LQ--------------VIECNGPTNTRVYT 206 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + V G A S + E AA + L+ Sbjct: 207 MAVYFRGKHLACCNGHSMQQVEINAAKQALEN 238 >gi|224074235|ref|XP_002304313.1| predicted protein [Populus trichocarpa] gi|222841745|gb|EEE79292.1| predicted protein [Populus trichocarpa] Length = 535 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 19/166 (11%) Query: 9 LEKR--IGY------AFANRS-------LLEKALTHSSI----SHSYQESYERLEFLGDR 49 LE + +GY F + + LL A H S + + + RL FLG Sbjct: 135 LEAKQALGYPLEPSDRFGDDNPAKQFDTLLYLAFQHPSCERTNARHVRSGHSRLCFLGQY 194 Query: 50 ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 +L L + + L R L+ + + L + I ++ K Sbjct: 195 VLELAFAEYFLQRYPRESPAPLRERVFGLIGKRNLPKWIKAASLHNLIFPYDNMDKLQRK 254 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 V ++ A+YL G+ + + ++ + Sbjct: 255 EREPPVKSVFWAVFGAIYLCFGMPEVYRVLFEVFEMDPEAEDCQPK 300 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 10/136 (7%) Query: 18 ANRSL---LEKALTHSS-ISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + YERLE++G +I ++++ L A L Sbjct: 392 RNIELGLGLQLCFLHPSNYKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQ 451 Query: 73 VRFNSLVSAETCSQVARELDLASFI----RVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 + ++ + C + RE L +I +V + S V SL Y Sbjct: 452 EKHRRVLMNKFCGRYLREKHLHKYITYADKVQDAYEHNRRLRNPST-TAVNHSLHGLSYT 510 Query: 129 DGGIEVAGTFVDKYWK 144 G + + Sbjct: 511 IYGKPDVRRLMFDVFD 526 >gi|307203953|gb|EFN82860.1| SON protein [Harpegnathos saltator] Length = 891 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E+ K P Y + F GPDH F V+++G+ + +K+ A+ Sbjct: 817 KHPVSLLGEYCSKKKLGAPVYDLCFECGPDHRKNFLFKVKVNGIEYKPSVASPNKKQAKA 876 Query: 214 VAAAEVLKREGIW 226 AA L+ G+ Sbjct: 877 EAAQICLQTLGLL 889 >gi|291414566|ref|XP_002723530.1| PREDICTED: RNA-specific adenosine deaminase B1 isoform 2 [Oryctolagus cuniculus] Length = 715 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G A +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQA-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|291414564|ref|XP_002723529.1| PREDICTED: RNA-specific adenosine deaminase B1 isoform 1 [Oryctolagus cuniculus] Length = 701 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G A +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQA-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|242021000|ref|XP_002430935.1| tar RNA binding protein, putative [Pediculus humanus corporis] gi|212516153|gb|EEB18197.1| tar RNA binding protein, putative [Pediculus humanus corporis] Length = 335 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE+ + P Y++ H+P F V ++ L G SKR A+ AA Sbjct: 6 PVSVLQEYLVSLKQC-PSYELLHNGVGTHNPLFIYRVHVNDL-FEDGKGKSKREAKHNAA 63 Query: 217 AEVLKREGI 225 +LK+ + Sbjct: 64 ENMLKKLNV 72 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 2/93 (2%) Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 ++ + V K + + + L+E+ P Y+V SG H F Sbjct: 71 NVDETNSSVPKKQYDKYDEMDPGE-NYVGMLKEYCLMNPYPEPTYQVEEESGQPHCKVFK 129 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V +S G+ +K+ A+Q+ A ++L+R Sbjct: 130 MVCFVS-QLQEYGISSTKKGAKQIGAFKMLERL 161 >gi|325181016|emb|CCA15426.1| AlNc14C11G1368 [Albugo laibachii Nc14] Length = 841 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 77/224 (34%), Gaps = 40/224 (17%) Query: 25 KALTHSSISHSYQESYERLE-----FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +ALT + E LE LGD ++ ++++ L + F +K+ L + + Sbjct: 628 QALTRPT---------EALESLWIMHLGDAMINMVVAAFLIHTFPCSKDELLLHVQSHVT 678 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL--DGGIEVAGT 137 S E AR+ +A + + D ++ + A V + + L+L DG + Sbjct: 679 SNEQRILAARKAGIAHLLPLLCDEYEEEQINGSDKLARVFNTTLGFLFLENDGNVPFMTQ 738 Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEW---AHAKFGVTPEY-------------KVTFRS 181 + L R EW + + ++ S Sbjct: 739 ILKHIMFPDILAVIDRR--------EWQRSTQSFGHYLLSWDKQNHKRTRCTFKRLRDSS 790 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 FTV + ++ A+G S A+ A + L+ G+ Sbjct: 791 ADSKHGHFTVALYVNDHMVARGRGISMSTAQDAACMKALRMFGL 834 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 1/101 (0%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S +RL FLG+ L L + L + + + S+V ET + + + L S ++ Sbjct: 453 SQDRLAFLGNHALKFLAAFSLSFKIADGSDNPM-EQAPSVVLDETVRDITQSVGLDSLLQ 511 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 + +L S+ + + +L+ A+YL GIE TF+ Sbjct: 512 CAFNLSTLKSDVKQSMFENCIRALVGAIYLASGIEACQTFL 552 >gi|296229001|ref|XP_002760089.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform 1 [Callithrix jacchus] Length = 1226 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNLIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560 Query: 215 AAAEVL 220 AA + + Sbjct: 561 AAMKAM 566 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V++ SK+ A+Q+ Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQM 671 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 672 AAEEAMKAL 680 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789 Query: 221 K 221 + Sbjct: 790 R 790 >gi|126321042|ref|XP_001367821.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 569 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A A G+ SK+ A++ Sbjct: 305 MNPVSCLAQILQAKKEKEPDYALLSDRGKSRRREFLMQVKV-GSAVATGIGLSKKIAKRN 363 Query: 215 AAAEVLKREGIWT 227 AA +L G T Sbjct: 364 AAEAMLLHLGYKT 376 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V P+YK+ GP H F+V + + Q S + A+ AA + L+ Sbjct: 20 NRVQPQYKLLNERGPAHCKMFSVQLTLGEQTW-QSEGSSIKKAQHAAANKALR 71 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K + ++V SGP H F V + G A+G SK+ +++ AA+ +L+ Sbjct: 217 KRNMPVTFEVIKESGPPHMKNFVTRVSV-GEFSAEGEGNSKKLSKKRAASSILQEL 271 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 144 KVFYVQLTVGNNEFF-GEGKTRQAARHNAATKALQAL 179 >gi|121711409|ref|XP_001273320.1| RNase3 domain protein [Aspergillus clavatus NRRL 1] gi|119401471|gb|EAW11894.1| RNase3 domain protein [Aspergillus clavatus NRRL 1] Length = 421 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 10/128 (7%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E+ GY F + LL +A+T + + + L +G L F Sbjct: 6 KIEQISGYRFRDERLLHEAMTAAGADENNHDGNRPL-----AQVGKSFVELCSVKFGYLN 60 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 E ++ + C+ +A+E+ + + R + + V +LI A+ Sbjct: 61 RTER-ALKIQNINNDRCALIAKEIGIDQHLTYCP--RHQG--YSKKVLNIAVNALIGAIN 115 Query: 128 LDGGIEVA 135 +D E Sbjct: 116 IDSDSEEV 123 >gi|296229003|ref|XP_002760090.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform 2 [Callithrix jacchus] Length = 1200 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNLIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560 Query: 215 AAAEVL 220 AA + + Sbjct: 561 AAMKAM 566 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V++ SK+ A+Q+ Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQM 671 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 672 AAEEAMKAL 680 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789 Query: 221 K 221 + Sbjct: 790 R 790 >gi|296229005|ref|XP_002760091.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform 3 [Callithrix jacchus] Length = 1181 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNLIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560 Query: 215 AAAEVL 220 AA + + Sbjct: 561 AAMKAM 566 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V++ SK+ A+Q+ Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQM 671 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 672 AAEEAMKAL 680 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 712 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 770 Query: 221 K 221 + Sbjct: 771 R 771 >gi|168048373|ref|XP_001776641.1| double-stranded RNA binding protein [Physcomitrella patens subsp. patens] gi|162671933|gb|EDQ58477.1| double-stranded RNA binding protein [Physcomitrella patens subsp. patens] Length = 1053 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE A P Y T RSGP H P FT VE++ + + +K+ AE+ AA Sbjct: 345 KNLLQETAQRAGVSLPVYATT-RSGPGHLPVFTCTVEVASMTFSGEAAKTKKQAEKNAAM 403 Query: 218 E---VLKR 222 LK+ Sbjct: 404 AAWSALKQ 411 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212 K +LQE A P Y R GPDH PRF V +G + R AE Sbjct: 231 YKNQLQELAQRSCFNLPAYACI-REGPDHAPRFKATVNFNGEVFES---PNYCNTLRQAE 286 Query: 213 QVAAAEVLK 221 AA L Sbjct: 287 HAAAEVALN 295 >gi|125603259|gb|EAZ42584.1| hypothetical protein OsJ_27148 [Oryza sativa Japonica Group] Length = 125 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 6/84 (7%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 L + + K++LQE+ P Y T G H +F V + G + Sbjct: 27 PAPLHTPPPHCNYKSKLQEYLQQANKQLPIY-CTKCKGEHHQLKFKSTVMVDGEEFSSTF 85 Query: 205 DCSK-RAAEQVAAAEV----LKRE 223 + + AEQ AA L+R+ Sbjct: 86 CHRRVKDAEQDAAKVAYDTLLERK 109 >gi|312079805|ref|XP_003142331.1| hypothetical protein LOAG_06747 [Loa loa] gi|307762503|gb|EFO21737.1| hypothetical protein LOAG_06747 [Loa loa] Length = 215 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 24/48 (50%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 EYK+ SGP H +FTV + ++ G S + A+Q AA L Sbjct: 71 EYKLMDESGPAHKKQFTVSLVLTPDQVFYGKGASIKKAQQSAAETALN 118 >gi|301767390|ref|XP_002919107.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2 [Ailuropoda melanoleuca] Length = 741 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYALLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|301767388|ref|XP_002919106.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1 [Ailuropoda melanoleuca] Length = 701 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYALLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|281341190|gb|EFB16774.1| hypothetical protein PANDA_007702 [Ailuropoda melanoleuca] Length = 718 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 69 PKNALMQL--NEIKPGLQYALLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 125 Query: 217 AEVLK 221 + L+ Sbjct: 126 EKALR 130 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 232 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 283 >gi|74001569|ref|XP_544931.2| PREDICTED: similar to RNA-specific adenosine deaminase B1 isoform DRADA2a [Canis familiaris] Length = 746 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 124 PKNALMQL--NEIKPGLQYALLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 180 Query: 217 AEVLK 221 + L+ Sbjct: 181 EKALR 185 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 46/162 (28%), Gaps = 15/162 (9%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE- 120 F +A E L++ + + S A D + + S + + Sbjct: 189 QFPNASEAHLAMGRTLSANTDFTSDQA---DFPDTLF--NGFETPDRSEVPFYLGSNGDD 243 Query: 121 --SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 S L L AG ++ L E +Y Sbjct: 244 SFSSSGDLSLAASPAPAG-LAQPPLPGPPPFPPPSGKNPVMILNEL-----RPGLKYDFL 297 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 SG H F + V + G +G +K+ A+ AA L Sbjct: 298 SESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 338 >gi|9633838|ref|NP_051918.1| gp029L [Rabbit fibroma virus] gi|6578557|gb|AAF17911.1|AF170722_29 gp029L [Rabbit fibroma virus] Length = 116 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Query: 155 RDAKTELQEWAHAKFGVTPEYKV-TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ T L E+ E+ + R+G H+P FT VV +SG + +K+ A + Sbjct: 42 KNPCTVLNEYCQITSR---EWSINVTRTGQSHNPTFTAVVTVSGYSFKSATGSNKKEARK 98 Query: 214 VAAAEVL 220 AA E + Sbjct: 99 NAAKEAM 105 >gi|201068|gb|AAA40150.1| serine/threonine-specific protein kinase [Mus musculus] Length = 518 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 20/53 (37%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GV YK SGP HD RFT V I + SK A AA Sbjct: 18 QMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFGEAKGRSKTEARNAAAKLA 70 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 17/37 (45%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF +I G +K+ A+Q+AA E ++ Sbjct: 124 QRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKL 160 >gi|156554944|ref|XP_001601978.1| PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] Length = 900 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E+ + P Y++ F GPDH F V+++G+ + +K+ A+ Sbjct: 827 KHPVSLLGEYCSKRKFGAPVYELCFECGPDHKKNFLFKVKVNGVEYKPAVASPNKKLAKA 886 Query: 214 VAAAEVLKREGIW 226 AA L+ G+ Sbjct: 887 EAAQVCLQSIGLL 899 >gi|156551920|ref|XP_001607288.1| PREDICTED: similar to GA15248-PA [Nasonia vitripennis] Length = 330 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 80/238 (33%), Gaps = 37/238 (15%) Query: 15 YAFANR-------SLLEKALTHSSISHSYQESYERL-------------EFL--GDRILG 52 YAF NR LLE+A H S +E +++ E + G I+ Sbjct: 67 YAFNNRLSEQFDTDLLEQAFIHRSYVIREEEDQKKVGIEDPQLDLTDNREMIDEGREIVS 126 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV--SSDLRKDVCSF 110 L+I L A + + L+S + A + I S + + Sbjct: 127 LVIDNYLSQSLPLAPQECIYAFKQYLLSTPVLANTASGIGAKDLILSADSPLEEETI--- 183 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAH 166 A+ +L +AL +E G FV + + + L + Sbjct: 184 -----ANTFYALTSALNRSVDLEHTGLFVRDILIAQLVAKDLMEIWCPEEPVEILNDILD 238 Query: 167 AKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + E ++ ++G + P + + V + G + AE++AA L+R Sbjct: 239 REHRELAEPRIIAQNGVNTLLPVYNIAVYSNQEFLGSGFGETIEEAEKMAAINALQRM 296 >gi|156842019|ref|XP_001644379.1| hypothetical protein Kpol_1064p1 [Vanderwaltozyma polyspora DSM 70294] gi|156115021|gb|EDO16521.1| hypothetical protein Kpol_1064p1 [Vanderwaltozyma polyspora DSM 70294] Length = 377 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 70/227 (30%), Gaps = 35/227 (15%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S++ + L G +L ++ L + L+ ++ +S + + + + Sbjct: 130 SVNTNNYFDNFGLNIFGKNLLTFHVTHHLLQKYPRLPTVVLNAAVDAYISEKVLASIGKS 189 Query: 91 LD--------LASFIR-------VSS------------DLRKDVCSFMTS--IQADVVES 121 L F R + + +S A V S Sbjct: 190 WGIETENTSVLDRFTRNEPINITLGKLRFMNNSLNKEDGIEYVSGQLQSSDAAYALAVRS 249 Query: 122 LIAALYLDGGI---EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYK 176 +IA L+ ++ F++ R L + + + EL + P + Sbjct: 250 IIATLWASTQKTQPDLVIKFINDNILSRKLDITRMFQFENPTRELATLCRREGFEQPISR 309 Query: 177 VTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + SG P F + V +G S + A+ AA + L + Sbjct: 310 LLAESGRLSKAPVFIIGVFSGNEKLGEGFGSSLKEAKARAATDALMK 356 >gi|125561394|gb|EAZ06842.1| hypothetical protein OsI_29078 [Oryza sativa Indica Group] Length = 310 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 6/73 (8%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQV 214 + K++LQE+ P Y T G H +F V + G + + + AEQ Sbjct: 36 NYKSKLQEYLQQANKQLPIY-CTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQD 94 Query: 215 AAAEV----LKRE 223 AA L+R+ Sbjct: 95 AAKVAYDTLLERK 107 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 8/67 (11%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSG---PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 K+ L E+ PEY VT G P + V +G G +K+ AEQ Sbjct: 128 KSILHEYTTKTKTDQPEYSVTKTEGSVTP-----YVSSVSFAGHTYTGGAARNKKDAEQK 182 Query: 215 AAAEVLK 221 AA +K Sbjct: 183 AARAAVK 189 >gi|115476208|ref|NP_001061700.1| Os08g0384100 [Oryza sativa Japonica Group] gi|75225116|sp|Q6YW64|DRB4_ORYSJ RecName: Full=Double-stranded RNA-binding protein 4; AltName: Full=dsRNA-binding protein 4 gi|40253891|dbj|BAD05825.1| unknown protein [Oryza sativa Japonica Group] gi|113623669|dbj|BAF23614.1| Os08g0384100 [Oryza sativa Japonica Group] Length = 312 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 6/73 (8%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQV 214 + K++LQE+ P Y T G H +F V + G + + + AEQ Sbjct: 38 NYKSKLQEYLQQANKQLPIY-CTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQD 96 Query: 215 AAAEV----LKRE 223 AA L+R+ Sbjct: 97 AAKVAYDTLLERK 109 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 8/67 (11%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSG---PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 K+ L E+ PEY VT G P + V +G G +K+ AEQ Sbjct: 130 KSILHEYTTKTKTDQPEYSVTKTEGSVTP-----YVSSVSFAGHTYTGGAARNKKDAEQK 184 Query: 215 AAAEVLK 221 AA +K Sbjct: 185 AARAAVK 191 >gi|303272367|ref|XP_003055545.1| predicted protein [Micromonas pusilla CCMP1545] gi|226463519|gb|EEH60797.1| predicted protein [Micromonas pusilla CCMP1545] Length = 348 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 73/211 (34%), Gaps = 27/211 (12%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE------------GELSVRFNS 77 S+ E+ ERL F GD++L ++ L+ +E G +S S Sbjct: 101 RSVPRDGAET-ERLAFFGDKVLNHAVAMSLYAQQVRMRERPGHEDDASYCVGRMSTLVAS 159 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL-----DGGI 132 S + +++ L I + + ++E+ A++L D G Sbjct: 160 ARSNKLFTRLLARLLRDDMIAAVPPGALEKGRAHS--VGTMIEA---AVFLVHEGSDEG- 213 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 + A V + ++A + + K E E E K PD F Sbjct: 214 QTAVDEVGLFLLEQAEEMAAEVFNFKGEFYELVAKGVEGEMEVKTLKEDRPD--EYFMAY 271 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + G+ A +K AE AA VL+R Sbjct: 272 ATLDGVK-ANARGRNKLEAEHGAAKAVLERL 301 >gi|145234665|ref|XP_001389981.1| RNAse III [Aspergillus niger CBS 513.88] gi|134057653|emb|CAK38052.1| unnamed protein product [Aspergillus niger] Length = 154 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 11/144 (7%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKAL----THSSISHSYQESYERLEFLGDRILGLLIST 57 A R TL+ IGY F + + +AL H + + +++L +GD +L ++++ Sbjct: 7 PAERAQTLQSLIGYIFNDPNRAMEALVAAGVHMPGLINRTDGHKQLALVGDAVLRMILAL 66 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 + +E S+ ++ +Q R L L + V+ + A Sbjct: 67 DGYEA-RKGREFTNSIL-STKAGNTYIAQAGRNLGLDKLVIVNP---AQAGMVADKVMAS 121 Query: 118 VVESLIAALYL--DGGIEVAGTFV 139 VE++I A+++ DG +E + Sbjct: 122 AVEAIIGAVFMDSDGSVESVRPVL 145 >gi|170051370|ref|XP_001861732.1| ribonuclease iii [Culex quinquefasciatus] gi|167872669|gb|EDS36052.1| ribonuclease iii [Culex quinquefasciatus] Length = 186 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 41/163 (25%) Query: 62 HFDSAKEGELSVRFNSLVSA-ETCSQVA-RELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F ++G L+ + E+ S++ +L + S+ S T +AD++ Sbjct: 1 MFPDLEKGGLATYRAAAFQEDESLSKIWSDDLGITSYAVYS----NKKADLKTKDRADLL 56 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+ + ALY+D G+ A V Sbjct: 57 EAFLGALYVDKGLNTAKRSAT-----------------------------------CVIE 81 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP + +T+ V G A S + A+ AA + L+ Sbjct: 82 CNGPTNTRVYTMAVYFRGKHLACSNGHSIQEAKINAAKQALEN 124 >gi|301774246|ref|XP_002922574.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific adenosine deaminase-like [Ailuropoda melanoleuca] Length = 1144 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ T L E H K G + E+++ R GP HDP+F V + SK+ A+Q+ Sbjct: 560 KNPVTTLLECVH-KLGSSCEFRLLSREGPAHDPKFQYCVAMGAHTFPTASAPSKKVAKQM 618 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 619 AAEEAVKAL 627 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + + GP H+PRF V I G SK+ A+Q Sbjct: 449 KNPISGLLEYAQ-FASQTCEFNLLEQRGPPHEPRFKFQVIIGGREFPPAEAGSKKVAKQD 507 Query: 215 AAAEVL 220 AA + + Sbjct: 508 AALKAM 513 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 678 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 736 Query: 221 K 221 + Sbjct: 737 R 737 >gi|12849779|dbj|BAB28477.1| unnamed protein product [Mus musculus] Length = 313 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K K + + LQE A PEY ++ GP H +T + + G S Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASN 177 Query: 209 RAAEQVAAAEVLKR 222 + A++ AA + L + Sbjct: 178 KQAKRNAAEKFLAK 191 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ H P FT V + + G SK+ A+ Sbjct: 33 KTPIQVLHEYGMKTKNI-PVYECERSDVQVHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90 Query: 215 AAAEVLK 221 AA + Sbjct: 91 AAEAAIN 97 >gi|73696282|gb|AAZ80928.1| nuclear RNase III Drosha [Macaca mulatta] Length = 174 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 40/82 (48%) Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F S +EG L+ ++V + + +A++L+L F+ + S + A+ E+L Sbjct: 2 FPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEAL 61 Query: 123 IAALYLDGGIEVAGTFVDKYWK 144 I A+YL+G +E A + Sbjct: 62 IGAVYLEGSLEEAKQLFGRLLF 83 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLIST 57 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + Sbjct: 120 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATE 174 >gi|322786514|gb|EFZ12948.1| hypothetical protein SINV_03181 [Solenopsis invicta] Length = 289 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 82/236 (34%), Gaps = 31/236 (13%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERL-------------EFL--GDRILG 52 KR+ +F + LE+A TH S ++ + EF+ GD + Sbjct: 44 AFNKRLSESF-DMEKLEQAFTHRSYIIQEEQRQREMGIEDPTLAIQDNTEFVRKGDELTS 102 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 + + L +A E + + L+S E ++ A + I + +K Sbjct: 103 QFVQSYLSQILPNASEDVIISLHDYLLSEEILAKAAFHIGTKDIILTEAMTQKT------ 156 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK-TE----LQEWAHA 167 AD +L+AAL + A FV + + K T+ L + Sbjct: 157 --LADTFLALVAALAESVDVNHAANFVKDFLIVILAEKDLLEI-WKPTQPVEHLNDVLQK 213 Query: 168 KFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + E ++ +G + + V + G + + A+ VAA +L R Sbjct: 214 QNRSPVEPRLIGHTGQNTLLVVYHVAMYSDKEFLGSGFGQTIQEAKNVAALNILSR 269 >gi|260833280|ref|XP_002611585.1| hypothetical protein BRAFLDRAFT_117159 [Branchiostoma floridae] gi|229296956|gb|EEN67595.1| hypothetical protein BRAFLDRAFT_117159 [Branchiostoma floridae] Length = 351 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 69/227 (30%), Gaps = 28/227 (12%) Query: 19 NRSLLEKALTHSSISHSYQ-----------------ESYERLEFLGDRILGLLISTLLFN 61 N S L A S + + +L G ++ I + L Sbjct: 98 NLSTLRAAFIDRSYVKEEEERRRELSLPLEDVKLDMQDNSQLAEQGWQVTTNYIHSFLRA 157 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F + + + + + +A L + IR S+ + V + Sbjct: 158 EFPLLPDEGVKAIHDYVTQEDMLVWIANHLGVKDLIRCSTFPIP------PPVTKQVFLA 211 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHAKFGVTPEYKV 177 +I A+ D G + A TFV + + + + L E PE +V Sbjct: 212 VIGAVNHDQGSQRAETFVHDFVVAQLVGKDVNAMWDIPNPMGMLAEMLQKAGKGEPEPRV 271 Query: 178 TFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SG + P F V V + + + A + AA L Sbjct: 272 INQSGANTVTPVFFVGVYSNKELLGEASGDTMPLAVEEAARVALANM 318 >gi|17568157|ref|NP_508196.1| STAUfen (dsRNA binding protein) homolog family member (stau-1) [Caenorhabditis elegans] gi|1519663|gb|AAB07566.1| Hypothetical protein F55A4.5 [Caenorhabditis elegans] Length = 705 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + + + L + AK P +++ G F + V+ +G +KR A+ Sbjct: 410 HQINPVSRLIQVTQAKSKEHPTFELVAEHGVSKYKEFIIQVKYGDDVQ-EGKGPNKRLAK 468 Query: 213 QVAAAEVLKREG 224 + AA +L+ G Sbjct: 469 RAAAEAMLESIG 480 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 23/48 (47%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y + SGP H FTV + ++ +G S + A+Q +A LK Sbjct: 95 VYNLQDESGPAHKKLFTVKLVLTEAETFEGSGTSIKRAQQASAEAALK 142 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQ--GMDCSKRAAEQVAAAEVL 220 + V ++V GP HD ++ V + A+ G K++A+Q A ++L Sbjct: 303 QLKVNVVFEVLKEEGPPHDRQYVVRCAFVTSGNVVKAEAVGKGKKKKSAQQEACTQLL 360 Score = 37.0 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 19/30 (63%) Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V+V I+G + A G+ + A+Q AAA+ L Sbjct: 233 VIVNINGKSIATGIGETYPLAKQDAAAKAL 262 >gi|58265282|ref|XP_569797.1| hypothetical protein CNC05030 [Cryptococcus neoformans var. neoformans JEC21] gi|134109217|ref|XP_776723.1| hypothetical protein CNBC2140 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259403|gb|EAL22076.1| hypothetical protein CNBC2140 [Cryptococcus neoformans var. neoformans B-3501A] gi|57226029|gb|AAW42490.1| hypothetical protein CNC05030 [Cryptococcus neoformans var. neoformans JEC21] Length = 422 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 49/289 (16%), Positives = 81/289 (28%), Gaps = 91/289 (31%) Query: 23 LEKALTHSSI-----------------SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L LTH S + + +E+ E L LG+ +LGL S L + Sbjct: 64 LVTCLTHPSFVPAAQQDSELQAGPGSAAPATKETNELLATLGNSLLGLFASEHLSTIYPY 123 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDL--------------------ASFIRVSS---- 101 L + V +C VAR L + +R S Sbjct: 124 LPTKPLQQAVTAYVGPASCLSVARSLGVAVQGGGNTGLPGLGAGSSSAGVAVRWSKTAVA 183 Query: 102 --------DLRKDV-------CSFMTSIQ-------------------ADVVESLIAALY 127 F I+ A V + + +Y Sbjct: 184 ERNWRDTRGEAAQGPLKVPVGKRFRKYIKQEDQDVTVQARRETHEDVVASAVRAFVGLIY 243 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA-------------HAKFGVTPE 174 + GI A F ++ RAL +Q + + + Sbjct: 244 QEQGIHAARAFTHAHFLSRALDLPSLIT-PINPMQVLSSVVSSHLSAAGVPASSSHTLIQ 302 Query: 175 YKVTFRSGPDH-DPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLK 221 ++ +G P F + + + G+ A+G SK A+ AA L+ Sbjct: 303 PRLLASTGTASQAPLFLIGLFLPSGIKLAEGHGSSKAMAQHRAAVNALQ 351 >gi|18640118|ref|NP_570192.1| SPV032 putative PKR inhibitor host range protein [Swinepox virus] gi|18448525|gb|AAL69771.1| SPV032 putative PKR inhibitor host range protein [Swinepox virus] Length = 177 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ T L E+ + SG H P FT + +SG+ G +K+ A+Q Sbjct: 102 NKNPITVLNEYCQITQRDWII-DIIS-SGQSHCPIFTASITVSGIKCKTGKGSTKKEAKQ 159 Query: 214 VAAAEVLK 221 +AA E + Sbjct: 160 IAARETMN 167 >gi|170051377|ref|XP_001861735.1| ribonuclease iii [Culex quinquefasciatus] gi|167872672|gb|EDS36055.1| ribonuclease iii [Culex quinquefasciatus] Length = 217 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 40/175 (22%) Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSSDLRKDV 107 +L L S A G + R + E+ S++ +L + S+ S+ Sbjct: 20 SVLPLTASVTGHVRGPRACCGLATYRAAAFQEDESLSKIWSDDLGITSYAVYSNK----K 75 Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 T +AD++E+ + ALY+D G+ A Sbjct: 76 ADLKTKDRADLLEAFLGALYVDKGLNTAKRSAT--------------------------- 108 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V +GP + +T+ V G A S + A+ AA + L+ Sbjct: 109 --------CVIECNGPTNTRVYTMAVYFRGKHLACSNGHSIQEAKINAAKQALEN 155 >gi|145349136|ref|XP_001418996.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579226|gb|ABO97289.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 656 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 75/202 (37%), Gaps = 33/202 (16%) Query: 34 HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 H E +GD+I G + + + GE + +++ + S + +Q+ E L Sbjct: 382 HVSTSDVEMHALIGDKIFGAALLEEIVGNRLCKDTGEATRQYSEVASNASMAQLVSEC-L 440 Query: 94 ASFIRVSSD-LRKDVCSFMTSIQADVVESLIAALYL----DGGIEVAGTFVDKYWKQRAL 148 ++ + + + AA+Y+ GG + + K++ + Sbjct: 441 PQHVQGGREVEEHSAGTLVE-----------AAVYMVNQMAGGPQAVQQ-LAKWFVYNVV 488 Query: 149 KSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP----- 200 GK +R + K + E G T +++ DH+P F AP Sbjct: 489 VEGKKQRRFTNPKGLIIEL----NGHTMSHRIEGT--ADHEPAFQARCVWPKEAPREQQR 542 Query: 201 -AQGMDCSKRAAEQVAAAEVLK 221 + SK+ AE AA E+L+ Sbjct: 543 ETTAIGKSKKEAEANAAKEMLE 564 >gi|328852770|gb|EGG01913.1| hypothetical protein MELLADRAFT_66687 [Melampsora larici-populina 98AG31] Length = 460 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 19/126 (15%) Query: 10 EKRIGYAFANRSLLEKALT--HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 ++++ Y F N +LL KALT H LE++GD +L + + + H K Sbjct: 333 QEKLNYRFRNPNLLRKALTLDHPEFRL--------LEWIGDSVLDVWAAMEITKHRKGHK 384 Query: 68 EGELSVRFNSLVSAETCSQ-VARELDLASFIRVSSDLRKDVCSFMTSI-QADVVESLIAA 125 + + RF L + E Q V I F+ + VE+LI A Sbjct: 385 VSKANERFMDLTNNEFLGQRVTDSFKSLKHII-------QKPRFLGKLWLGKFVEALIGA 437 Query: 126 LYLDGG 131 ++LD Sbjct: 438 VFLDRN 443 >gi|159163524|pdb|1X49|A Chain A, Solution Structure Of The First Dsrm Domain In Interferon- Induced, Double-Stranded Rna-Activated Protein Kinase Length = 97 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +L ++ GV YK SGP HD RFT V I + SK+ A AA Sbjct: 19 KLNKYRQ-MHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLA 77 >gi|313233857|emb|CBY10026.1| unnamed protein product [Oikopleura dioica] Length = 500 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 + LQE + P YK +GP FT+V +I ++ + SK+ A+ AA+ Sbjct: 228 SVLQEMMQKRGASVPIYKTKGGAGPP----FTIVCQIDDMS-TEATGNSKKEAKHRAASS 282 Query: 219 VLKRE 223 +LK Sbjct: 283 MLKNL 287 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCS 207 K+ + R +ELQE+ + P Y G +H FT I L + Sbjct: 402 KNHEVNRHPVSELQEYLQQRHISAPAYFFIPHDGGYEHLKEFTCKCTIDELNLQV-KERR 460 Query: 208 K--RAAEQVAAAEVLK 221 K + A + AA ++LK Sbjct: 461 KNQKIARKAAATQMLK 476 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 8/74 (10%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQV 214 + LQE TPEYK SG + P F+ V + K A+ Sbjct: 324 NPVGLLQELMQKNGLQTPEYK----SGGEACPPFSWHVRLPHTGQSCTASGNKKAEAKGN 379 Query: 215 AAAEV---LKREGI 225 AA + LK GI Sbjct: 380 AARRMIAQLKEHGI 393 >gi|242775084|ref|XP_002478573.1| 60S ribosomal protein L3 [Talaromyces stipitatus ATCC 10500] gi|218722192|gb|EED21610.1| 60S ribosomal protein L3 [Talaromyces stipitatus ATCC 10500] Length = 384 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 69/270 (25%), Gaps = 75/270 (27%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L + L +S + L LG +L + + + + + + Sbjct: 83 LARTLRDASADPHPHFNNASLAVLGHDLLAQYTTEHIICTYPRLPMTVIYAAMYAYIGPR 142 Query: 83 TCSQVARELD--------------LASFIRVSSDLR---------KDVCSFMTSIQADVV 119 T + +A E L F RV + + SI + VV Sbjct: 143 TLATIAGEWGVELAAVPGPEVDPGLLQFKRVQPGTEIVQDPKKTTRPNTHWRKSIASSVV 202 Query: 120 E-----------------------------------------SLIAALYLDGGIEVAGTF 138 +++ +YL G A F Sbjct: 203 HGDIFGEPDLKTKNPKYVRPQLPDLESLPGVTAEKATSTFVQAVVGGIYLHAGRPAAKRF 262 Query: 139 VDKYWKQRALKSGKFR------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH-DPRFTV 191 ++ R L K RD L H + P K+ +G P F V Sbjct: 263 FKEHIVSRHLDMSKLFSFTQPARD----LATLCHRENIEPPVAKIISETGRHSRHPVFNV 318 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V +G S A AA LK Sbjct: 319 GVFSGQDKLGEGSGASLIEARTRAAVAALK 348 >gi|297818244|ref|XP_002877005.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata] gi|297322843|gb|EFH53264.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata] Length = 356 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y RSGP H P F+ VE++G++ +K+ AE+ AA Sbjct: 88 YKNLLQETAHRAGLDLPVYTSV-RSGPGHIPTFSCTVELAGMSFNGESAKTKKQAEKNAA 146 Query: 217 AEV---LKRE 223 L++ Sbjct: 147 IAAWFSLRKM 156 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 27/71 (38%), Gaps = 8/71 (11%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212 K +LQE A P Y T R GPDH PRF V +G + R AE Sbjct: 2 YKNQLQELAQRSCFNLPSYTCT-REGPDHAPRFKASVNFNGEIFES---PTYCSTLRQAE 57 Query: 213 QVAAAEVLKRE 223 AA L Sbjct: 58 HSAAEVALSAL 68 >gi|291241464|ref|XP_002740631.1| PREDICTED: RNA-specific adenosine deaminase B1-like [Saccoglossus kowalevskii] Length = 713 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + ++K +SGP H P F + VE++G +G+ +K+ A+ AA Sbjct: 94 PKNALMQL--NEIRPGLQFKFVSQSGPVHAPTFVMSVEVNGQ-MFEGIGTTKKKAKLQAA 150 Query: 217 AEVLK 221 + L+ Sbjct: 151 EKALR 155 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 6/60 (10%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 L S ++ L E +Y+ +G H F + V I G G + Sbjct: 244 LSSPPQGKNPIMLLNEL-----RPGLKYEFVSETGESHAKNFVMSVVIDGQN-FTGSARN 297 >gi|310689634|pdb|2L3J|A Chain A, The Solution Structure Of The Adar2 Dsrbm-Rna Complex Reveals A Sequence-Specific Read Out Of The Minor Groove Length = 236 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 6 PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 62 Query: 217 AEVLK 221 + L+ Sbjct: 63 EKALR 67 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 169 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 220 >gi|310689632|pdb|2L3C|A Chain A, Solution Structure Of Adar2 Dsrbm1 Bound To Lsl Rna Length = 74 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 6 PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 62 Query: 217 AEVLK 221 + L+ Sbjct: 63 EKALR 67 >gi|161377407|ref|NP_037026.2| double-stranded RNA-specific editase 1 isoform 1 [Rattus norvegicus] gi|149043657|gb|EDL97108.1| adenosine deaminase, RNA-specific, B1, isoform CRA_b [Rattus norvegicus] Length = 711 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|161377409|ref|NP_001104525.1| double-stranded RNA-specific editase 1 isoform 2 [Rattus norvegicus] gi|149043658|gb|EDL97109.1| adenosine deaminase, RNA-specific, B1, isoform CRA_c [Rattus norvegicus] Length = 701 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|161377411|ref|NP_001104526.1| double-stranded RNA-specific editase 1 isoform 3 [Rattus norvegicus] gi|149043659|gb|EDL97110.1| adenosine deaminase, RNA-specific, B1, isoform CRA_d [Rattus norvegicus] Length = 687 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 55 PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 111 Query: 217 AEVLK 221 + L+ Sbjct: 112 EKALR 116 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 218 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 269 >gi|161377413|ref|NP_001104527.1| double-stranded RNA-specific editase 1 isoform 4 [Rattus norvegicus] gi|149043660|gb|EDL97111.1| adenosine deaminase, RNA-specific, B1, isoform CRA_e [Rattus norvegicus] Length = 677 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 55 PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 111 Query: 217 AEVLK 221 + L+ Sbjct: 112 EKALR 116 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 218 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 269 >gi|149043656|gb|EDL97107.1| adenosine deaminase, RNA-specific, B1, isoform CRA_a [Rattus norvegicus] Length = 695 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 73 PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 129 Query: 217 AEVLK 221 + L+ Sbjct: 130 EKALR 134 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 236 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 287 >gi|148699868|gb|EDL31815.1| adenosine deaminase, RNA-specific, B1, isoform CRA_f [Mus musculus] Length = 707 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 85 PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 141 Query: 217 AEVLK 221 + L+ Sbjct: 142 EKALR 146 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 248 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 299 >gi|148699867|gb|EDL31814.1| adenosine deaminase, RNA-specific, B1, isoform CRA_e [Mus musculus] Length = 717 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 85 PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 141 Query: 217 AEVLK 221 + L+ Sbjct: 142 EKALR 146 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 248 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 299 >gi|93278801|pdb|2B7T|A Chain A, Structure Of Adar2 Dsrbm1 Length = 73 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 6 PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 62 Query: 217 AEVLK 221 + L+ Sbjct: 63 EKALR 67 >gi|13272337|gb|AAK17102.1|AF291049_1 RNA adenosine deaminase 2 [Mus musculus] Length = 701 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|67625743|ref|NP_570965.2| double-stranded RNA-specific editase 1 isoform 1 [Mus musculus] gi|15529488|gb|AAL01301.1|AF403106_1 adenosine deaminase [Mus musculus] gi|148699869|gb|EDL31816.1| adenosine deaminase, RNA-specific, B1, isoform CRA_g [Mus musculus] gi|183396845|gb|AAI65982.1| Adenosine deaminase, RNA-specific, B1 [synthetic construct] Length = 701 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|15529494|gb|AAL01304.1|AF403109_1 adenosine deaminase [Mus musculus] gi|148699864|gb|EDL31811.1| adenosine deaminase, RNA-specific, B1, isoform CRA_b [Mus musculus] Length = 687 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 55 PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 111 Query: 217 AEVLK 221 + L+ Sbjct: 112 EKALR 116 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 218 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 269 >gi|15529492|gb|AAL01303.1|AF403108_1 adenosine deaminase [Mus musculus] gi|148699865|gb|EDL31812.1| adenosine deaminase, RNA-specific, B1, isoform CRA_c [Mus musculus] Length = 677 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 55 PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 111 Query: 217 AEVLK 221 + L+ Sbjct: 112 EKALR 116 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 218 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 269 >gi|21954727|gb|AAM83099.1|AF525421_1 adenosine deaminase ADAR2 [Mus musculus] gi|27357040|gb|AAN86546.1| adenosine deaminase [Mus musculus] gi|148699863|gb|EDL31810.1| adenosine deaminase, RNA-specific, B1, isoform CRA_a [Mus musculus] Length = 695 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 73 PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 129 Query: 217 AEVLK 221 + L+ Sbjct: 130 EKALR 134 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 236 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 287 >gi|74209845|dbj|BAE23623.1| unnamed protein product [Mus musculus] Length = 376 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|1710075|sp|P51400|RED1_RAT RecName: Full=Double-stranded RNA-specific editase 1; AltName: Full=RNA-editing deaminase 1; AltName: Full=RNA-editing enzyme 1; AltName: Full=dsRNA adenosine deaminase gi|1177853|gb|AAA96755.1| double-stranded RNA-specific editase [Rattus norvegicus] gi|1586827|prf||2204394A RNA-editing enzyme Length = 711 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|67625747|ref|NP_001020008.1| double-stranded RNA-specific editase 1 isoform 2 [Mus musculus] gi|68684375|sp|Q91ZS8|RED1_MOUSE RecName: Full=Double-stranded RNA-specific editase 1; AltName: Full=RNA-editing deaminase 1; AltName: Full=RNA-editing enzyme 1; AltName: Full=dsRNA adenosine deaminase gi|15529490|gb|AAL01302.1|AF403107_1 adenosine deaminase [Mus musculus] gi|74181126|dbj|BAE27830.1| unnamed protein product [Mus musculus] gi|74202480|dbj|BAE24831.1| unnamed protein product [Mus musculus] gi|148699866|gb|EDL31813.1| adenosine deaminase, RNA-specific, B1, isoform CRA_d [Mus musculus] Length = 711 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|260835858|ref|XP_002612924.1| hypothetical protein BRAFLDRAFT_227842 [Branchiostoma floridae] gi|229298306|gb|EEN68933.1| hypothetical protein BRAFLDRAFT_227842 [Branchiostoma floridae] Length = 280 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + ++K +SGP H P F + VE++G +G +K+ A+ AA Sbjct: 38 PKNALMQL--NELRPGLQFKFVSQSGPVHAPEFIMSVEVNGQT-FEGRGGTKKKAKLHAA 94 Query: 217 AEVLK 221 + L+ Sbjct: 95 EQALR 99 Score = 42.0 bits (98), Expect = 0.062, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 1/40 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + +Y+ +G H F + V I G +G + Sbjct: 194 ELRPGLKYEFVSETGESHAKNFVMAVTIDGQT-FEGSGRN 232 >gi|1657636|gb|AAB18134.1| RNA adenosine deaminase [Homo sapiens] Length = 711 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 79 PKNALMQL--DEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135 Query: 217 AEVLK 221 + L+ Sbjct: 136 EKALR 140 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 49/168 (29%), Gaps = 15/168 (8%) Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + F F +A E L++ V+ + S A D + + L S Sbjct: 138 ALRYFVQFPNASEAHLAMGRTLSVNTDFTSDQA---DFPDTLF--NGLETPDKSEPPFYV 192 Query: 116 ADVVE---SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 + S + L V + ++ L E Sbjct: 193 GSNGDDSFSSSGDVSLSAS-PVPASLTQPPLPIPPPFPPSSGKNPVMILNEL-----RPG 246 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 247 LKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|79420704|ref|NP_189329.3| DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA binding [Arabidopsis thaliana] gi|145322916|ref|NP_001030779.2| DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA binding [Arabidopsis thaliana] gi|75273549|sp|Q9LJF5|DRB3_ARATH RecName: Full=Double-stranded RNA-binding protein 3; AltName: Full=dsRNA-binding protein 3; Short=AtDRB3 gi|11994159|dbj|BAB01188.1| unnamed protein product [Arabidopsis thaliana] gi|45773934|gb|AAS76771.1| At3g26932 [Arabidopsis thaliana] gi|62321583|dbj|BAD95129.1| putative protein [Arabidopsis thaliana] gi|332643724|gb|AEE77245.1| dsRNA-binding protein 3 [Arabidopsis thaliana] gi|332643725|gb|AEE77246.1| dsRNA-binding protein 3 [Arabidopsis thaliana] Length = 359 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y RSGP H P F+ VE++G++ +K+ AE+ AA Sbjct: 88 YKNLLQETAHRAGLDLPVYTSV-RSGPGHIPTFSCTVELAGMSFNGESAKTKKQAEKNAA 146 Query: 217 AEV---LKRE 223 L++ Sbjct: 147 IAAWFSLRKM 156 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215 K +LQE A P Y T R GPDH PRF V +G CS R AE A Sbjct: 2 YKNQLQELAQRSCFSLPSYTCT-REGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60 Query: 216 AAEVLKRE 223 A L Sbjct: 61 AEVALSAL 68 >gi|195036694|ref|XP_001989803.1| GH18997 [Drosophila grimshawi] gi|193893999|gb|EDV92865.1| GH18997 [Drosophila grimshawi] Length = 321 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 75/237 (31%), Gaps = 39/237 (16%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55 KR+ F LL+ A T + +H QE +L G I I Sbjct: 72 KRLNEDFQ-LPLLQTAFTQRTYAHQEQERQRKLGIAEADLQMGDNSQLATKGVHIAKAYI 130 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 L N + L+S ET + V L I + Sbjct: 131 EAYLQNALPKVPPVGQQAIASYLLSTETLAHVCTHLGAKELIF------STEYPPSSETL 184 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQ---EWAHA 167 A + ++I AL G+E A FV + ++ L+ + LQ E Sbjct: 185 AQTLHAIIGALSDSSGVERAFLFVRDFICTQLNQKDLLEIWTPEQ----PLQLLGEICTQ 240 Query: 168 KFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K PE ++ G + + V + + +G + A + AA + L+ Sbjct: 241 KKLGEPEPRLLGDCGK--NTVLAAYHVGIYANRQLLGKGFGEDLQMATETAAIDALQ 295 >gi|332220545|ref|XP_003259416.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform 3 [Nomascus leucogenys] Length = 1234 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 555 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 613 Query: 215 AAAEVL 220 AA + + Sbjct: 614 AAMKAM 619 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 666 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 724 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 725 AAEEAMKAL 733 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 765 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 823 Query: 221 K 221 + Sbjct: 824 R 824 >gi|332220543|ref|XP_003259415.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform 2 [Nomascus leucogenys] Length = 1253 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 555 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 613 Query: 215 AAAEVL 220 AA + + Sbjct: 614 AAMKAM 619 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 666 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 724 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 725 AAEEAMKAL 733 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 784 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 842 Query: 221 K 221 + Sbjct: 843 R 843 >gi|332220541|ref|XP_003259414.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform 1 [Nomascus leucogenys] Length = 1279 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 555 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 613 Query: 215 AAAEVL 220 AA + + Sbjct: 614 AAMKAM 619 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 666 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 724 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 725 AAEEAMKAL 733 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 784 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 842 Query: 221 K 221 + Sbjct: 843 R 843 >gi|297663358|ref|XP_002810142.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 1 [Pongo abelii] Length = 1226 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560 Query: 215 AAAEVL 220 AA + + Sbjct: 561 AAMKAM 566 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 672 AAEEAMKAL 680 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789 Query: 221 K 221 + Sbjct: 790 R 790 >gi|297280147|ref|XP_002801844.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 3 [Macaca mulatta] Length = 1180 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 501 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 559 Query: 215 AAAEVL 220 AA + + Sbjct: 560 AAMKAM 565 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 612 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 670 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 671 AAEEAMKAL 679 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 711 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 769 Query: 221 K 221 + Sbjct: 770 R 770 >gi|297280145|ref|XP_001111902.2| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 1 [Macaca mulatta] Length = 1199 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 501 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 559 Query: 215 AAAEVL 220 AA + + Sbjct: 560 AAMKAM 565 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 612 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 670 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 671 AAEEAMKAL 679 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 730 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 788 Query: 221 K 221 + Sbjct: 789 R 789 >gi|297280143|ref|XP_002801843.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 2 [Macaca mulatta] Length = 1225 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 501 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 559 Query: 215 AAAEVL 220 AA + + Sbjct: 560 AAMKAM 565 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 612 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 670 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 671 AAEEAMKAL 679 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 730 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 788 Query: 221 K 221 + Sbjct: 789 R 789 >gi|62089368|dbj|BAD93128.1| adenosine deaminase, RNA-specific isoform ADAR-a variant [Homo sapiens] Length = 1244 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 520 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 578 Query: 215 AAAEVL 220 AA + + Sbjct: 579 AAMKAM 584 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 631 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 689 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 690 AAEEAMKAL 698 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 749 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 807 Query: 221 K 221 + Sbjct: 808 R 808 >gi|34364836|emb|CAE45853.1| hypothetical protein [Homo sapiens] Length = 1278 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 533 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 591 Query: 215 AAAEVL 220 AA + + Sbjct: 592 AAMKAM 597 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 644 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 702 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 703 AAEEAMKAL 711 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 762 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 820 Query: 221 K 221 + Sbjct: 821 R 821 >gi|31874703|emb|CAD98075.1| hypothetical protein [Homo sapiens] Length = 1257 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 533 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 591 Query: 215 AAAEVL 220 AA + + Sbjct: 592 AAMKAM 597 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 644 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 702 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 703 AAEEAMKAL 711 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 762 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 820 Query: 221 K 221 + Sbjct: 821 R 821 >gi|297663360|ref|XP_002810143.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 2 [Pongo abelii] Length = 1200 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560 Query: 215 AAAEVL 220 AA + + Sbjct: 561 AAMKAM 566 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 672 AAEEAMKAL 680 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789 Query: 221 K 221 + Sbjct: 790 R 790 >gi|114326369|ref|NP_001041600.1| interferon-induced, double-stranded RNA-activated protein kinase [Canis lupus familiaris] gi|62002572|gb|AAX58777.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Canis lupus familiaris] Length = 532 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 1/62 (1%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 EL + V +Y + GP H+ RFT I + SK+ A AA Sbjct: 13 ELNIFCQKHRKVL-KYNELSKEGPAHNLRFTFQAIIDEREYPEAEGKSKKEARNTAAKLA 71 Query: 220 LK 221 L+ Sbjct: 72 LE 73 Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 6/61 (9%) Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 A + + Y+ GP+ RF +I G +K+ A+ +AA + Sbjct: 111 LAQKEQL-SVNYEQWELKDCGPE---RFHCRCKIGQKEYDIGKGATKQEAKHLAAKFAYE 166 Query: 222 R 222 + Sbjct: 167 Q 167 >gi|149742267|ref|XP_001489941.1| PREDICTED: similar to RNA-specific adenosine deaminase B1 [Equus caballus] Length = 833 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y + ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 211 PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 267 Query: 217 AEVLK 221 + L+ Sbjct: 268 EKALR 272 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 47/162 (29%), Gaps = 15/162 (9%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE- 120 F +A E L++ + + S A D + + S + + Sbjct: 276 QFPNASEAHLAMGRTLSANTDFTSDQA---DFPDTLF--NGFETPDRSDVPFYLGSNGDD 330 Query: 121 --SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 S L L V + V ++ L E +Y Sbjct: 331 SFSSSGDLSLSAS-PVPASLVQPPLPVPPPFPPPSGKNPVMILNEL-----RPGLKYDFL 384 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 SG H F + V + G +G +K+ A+ AA L Sbjct: 385 SESGESHAKNFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 425 >gi|21430030|gb|AAM50693.1| GM01981p [Drosophila melanogaster] Length = 489 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEV 219 L E + P+YK+ GP H+ F VEI+G +K+ A+ AAA Sbjct: 420 LNELTSKNKWMPPQYKLRQDIGPAHNRSFLFSVEINGQTFTPDRGSNNKKEAKLNAAALC 479 Query: 220 LKREGIW 226 L+ GI Sbjct: 480 LRSLGIL 486 >gi|25009833|gb|AAN71087.1| AT18855p [Drosophila melanogaster] Length = 886 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEV 219 L E + P+YK+ GP H+ F VEI+G +K+ A+ AAA Sbjct: 817 LNELTSKNKWMPPQYKLRQDIGPAHNRSFLFSVEINGQTFTPDRGSNNKKEAKLNAAALC 876 Query: 220 LKREGIW 226 L+ GI Sbjct: 877 LRSLGIL 883 >gi|24645429|ref|NP_649914.1| CG8273 [Drosophila melanogaster] gi|7299212|gb|AAF54409.1| CG8273 [Drosophila melanogaster] Length = 874 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEV 219 L E + P+YK+ GP H+ F VEI+G +K+ A+ AAA Sbjct: 805 LNELTSKNKWMPPQYKLRQDIGPAHNRSFLFSVEINGQTFTPDRGSNNKKEAKLNAAALC 864 Query: 220 LKREGIW 226 L+ GI Sbjct: 865 LRSLGIL 871 >gi|2326526|emb|CAA55968.1| IFI-4 [Homo sapiens] Length = 1226 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560 Query: 215 AAAEVL 220 AA + + Sbjct: 561 AAMKAM 566 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 672 AAEEAMKAL 680 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789 Query: 221 K 221 + Sbjct: 790 R 790 >gi|297663362|ref|XP_002810144.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 3 [Pongo abelii] Length = 1181 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560 Query: 215 AAAEVL 220 AA + + Sbjct: 561 AAMKAM 566 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 672 AAEEAMKAL 680 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 712 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 770 Query: 221 K 221 + Sbjct: 771 R 771 >gi|221044884|dbj|BAH14119.1| unnamed protein product [Homo sapiens] Length = 970 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560 Query: 215 AAAEVL 220 AA + + Sbjct: 561 AAMKAM 566 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 672 AAEEAMKAL 680 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789 Query: 221 K 221 + Sbjct: 790 R 790 >gi|70166852|ref|NP_001102.2| double-stranded RNA-specific adenosine deaminase isoform a [Homo sapiens] gi|577170|gb|AAB06697.1| double-stranded RNA adenosine deaminase [Homo sapiens] gi|23398522|gb|AAH38227.1| Adenosine deaminase, RNA-specific [Homo sapiens] gi|119573571|gb|EAW53186.1| adenosine deaminase, RNA-specific, isoform CRA_d [Homo sapiens] gi|157928608|gb|ABW03600.1| adenosine deaminase, RNA-specific [synthetic construct] gi|157929250|gb|ABW03910.1| adenosine deaminase, RNA-specific [synthetic construct] Length = 1226 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560 Query: 215 AAAEVL 220 AA + + Sbjct: 561 AAMKAM 566 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 672 AAEEAMKAL 680 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789 Query: 221 K 221 + Sbjct: 790 R 790 >gi|915284|gb|AAC13782.1| p136 [Homo sapiens] gi|2795791|gb|AAB97118.1| RNA adenosine deaminase [Homo sapiens] Length = 1226 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560 Query: 215 AAAEVL 220 AA + + Sbjct: 561 AAMKAM 566 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 672 AAEEAMKAL 680 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789 Query: 221 K 221 + Sbjct: 790 R 790 >gi|313104303|sp|P55265|DSRAD_HUMAN RecName: Full=Double-stranded RNA-specific adenosine deaminase; Short=DRADA; AltName: Full=136 kDa double-stranded RNA-binding protein; Short=p136; AltName: Full=Interferon-inducible protein 4; Short=IFI-4; AltName: Full=K88DSRBP gi|55666219|emb|CAH71908.1| adenosine deaminase, RNA-specific [Homo sapiens] gi|55960913|emb|CAI16185.1| adenosine deaminase, RNA-specific [Homo sapiens] gi|55961273|emb|CAI17376.1| adenosine deaminase, RNA-specific [Homo sapiens] Length = 1226 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560 Query: 215 AAAEVL 220 AA + + Sbjct: 561 AAMKAM 566 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 672 AAEEAMKAL 680 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789 Query: 221 K 221 + Sbjct: 790 R 790 >gi|12711291|emb|CAA67170.1| dsRNA adenosine deaminase [Homo sapiens] Length = 1221 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 497 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 555 Query: 215 AAAEVL 220 AA + + Sbjct: 556 AAMKAM 561 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 608 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 666 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 667 AAEEAMKAL 675 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 726 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 784 Query: 221 K 221 + Sbjct: 785 R 785 >gi|242014081|ref|XP_002427726.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212512167|gb|EEB14988.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 865 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + TP++++ F GPDH F V ++G+ + +K+ A+ Sbjct: 789 KHPVSLLNELCSRRKYGTPQFELCFECGPDHKKNFLFKVIVNGVEYTPTIASPNKKQAKV 848 Query: 214 VAAAEVLKREGI 225 AAA L+ GI Sbjct: 849 EAAAVCLRALGI 860 >gi|163916108|gb|AAI57422.1| Double stranded RNA activated protein kinase 1 [Xenopus laevis] Length = 578 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + K +L + ++K +GP HDPRFT V ++G +G D K+ AE +A Sbjct: 5 NVKGQLISFCTKNGLSY-QFKKVESTGPSHDPRFTFQVFVNGEKLGEGQDKKKKGAEYMA 63 Query: 216 AAEVL 220 A L Sbjct: 64 AKMAL 68 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 2/65 (3%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + L E + R G H P F I + +K+ A++ A Sbjct: 118 NYVGILHELCQKH--TLIVTFLDERHGQPHIPEFFCKAVIGKEEFPKAKGKNKKEAKRKA 175 Query: 216 AAEVL 220 A L Sbjct: 176 AHLAL 180 >gi|70998456|ref|XP_753950.1| dsRNA-specific ribonuclease III [Aspergillus fumigatus Af293] gi|66851586|gb|EAL91912.1| dsRNA-specific ribonuclease III, putative [Aspergillus fumigatus Af293] gi|159126317|gb|EDP51433.1| dsRNA-specific ribonuclease III, putative [Aspergillus fumigatus A1163] Length = 142 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 60/136 (44%), Gaps = 13/136 (9%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ +GY F + +++ +A+ +E RL FLGD+++GL++ + + S + Sbjct: 11 IEEILGYTFQDPTIVYEAV--------SRERNPRLAFLGDKVVGLILLDIWYRTETSCAQ 62 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G R + + + A L L +F + + T +E+L+AA ++ Sbjct: 63 GY--SRLQDYATNKAMAHQAIRLHLDAFAAPGPS-QSQRATLGTHGLGTEIEALVAATWI 119 Query: 129 DG--GIEVAGTFVDKY 142 D EV + + Sbjct: 120 DSRRNFEVVKSVMKNL 135 >gi|70166944|ref|NP_056655.2| double-stranded RNA-specific adenosine deaminase isoform b [Homo sapiens] gi|119573575|gb|EAW53190.1| adenosine deaminase, RNA-specific, isoform CRA_f [Homo sapiens] Length = 1200 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560 Query: 215 AAAEVL 220 AA + + Sbjct: 561 AAMKAM 566 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 672 AAEEAMKAL 680 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789 Query: 221 K 221 + Sbjct: 790 R 790 >gi|2795789|gb|AAB97116.1| RNA adenosine deaminase [Homo sapiens] Length = 1200 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560 Query: 215 AAAEVL 220 AA + + Sbjct: 561 AAMKAM 566 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 672 AAEEAMKAL 680 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789 Query: 221 K 221 + Sbjct: 790 R 790 >gi|297663364|ref|XP_002810145.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 4 [Pongo abelii] gi|297663366|ref|XP_002810146.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 5 [Pongo abelii] Length = 931 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 207 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 265 Query: 215 AAAEVL 220 AA + + Sbjct: 266 AAMKAM 271 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 318 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 376 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 377 AAEEAMKAL 385 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 436 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 494 Query: 221 K 221 + Sbjct: 495 R 495 >gi|9633665|ref|NP_051743.1| m29L [Myxoma virus] gi|6523884|gb|AAF14917.1|AF170726_33 m29L [Myxoma virus] gi|170664495|gb|ACB28652.1| m29L [Myxoma virus] gi|170664667|gb|ACB28823.1| m29L [recombinant virus 6918VP60-T2] gi|301134555|gb|ADK63669.1| m29L [Myxoma virus] Length = 115 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Query: 155 RDAKTELQEWAHAKFGVTPEYKV-TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ T L E+ F E+ + R+G H P FT VV +SG + +K+ A + Sbjct: 41 KNPCTVLNEYCQITFR---EWSINVTRAGQSHSPTFTAVVTVSGYSFKSATGSNKKEARK 97 Query: 214 VAAAEVL 220 AA E + Sbjct: 98 NAAKEAM 104 >gi|292609374|ref|XP_694356.4| PREDICTED: hypothetical protein LOC565999 [Danio rerio] Length = 1079 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 60/186 (32%), Gaps = 23/186 (12%) Query: 45 FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 F G +L S L N A + + VS + F+ +R Sbjct: 890 FTGSTGAQVLSSDELSNSGPQAWIKKDQFLRAAPVSG----------GMGEFL-----MR 934 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTE 160 K E + + +D + VA + + + + Sbjct: 935 KMGWRSGEG-LGKHREGTVEPIIIDFKTDRKGLVAEGEKTQKSGNIVVMKDLLGKHPVSA 993 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG--LAPAQGMDCSKRAAEQVAAAE 218 L E + K PE+ + SGPDH F V ++G P +K+ A+ +AA Sbjct: 994 LMEMCNKKKWPQPEFVMVHHSGPDHRKNFLFKVVVNGSDYQPQSAS-PNKKHAKAMAATV 1052 Query: 219 VLKREG 224 L+ G Sbjct: 1053 ALQAMG 1058 >gi|40788412|dbj|BAD07039.1| hypothetical protein [Oryza sativa Japonica Group] Length = 397 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 28/73 (38%), Gaps = 8/73 (10%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAE 212 K +LQE A P V R GPDH PRF V +G S R AE Sbjct: 25 YKNQLQELAQRSCFSLPS-NVCTREGPDHAPRFKATVTFNGETF---DGPSNCTTLRQAE 80 Query: 213 QVAAAEVLKREGI 225 AA L R + Sbjct: 81 HAAAEVALARLSL 93 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 K LQE AH P Y RSGP H P F+ VE++G++ A +K+ AE+ Sbjct: 111 YKNLLQETAHRAGLKLPVYTTV-RSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKE 167 >gi|2795790|gb|AAB97117.1| RNA adenosine deaminase [Homo sapiens] Length = 1181 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560 Query: 215 AAAEVL 220 AA + + Sbjct: 561 AAMKAM 566 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 672 AAEEAMKAL 680 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 712 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 770 Query: 221 K 221 + Sbjct: 771 R 771 >gi|70167032|ref|NP_056656.2| double-stranded RNA-specific adenosine deaminase isoform c [Homo sapiens] gi|119573570|gb|EAW53185.1| adenosine deaminase, RNA-specific, isoform CRA_c [Homo sapiens] Length = 1181 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560 Query: 215 AAAEVL 220 AA + + Sbjct: 561 AAMKAM 566 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 672 AAEEAMKAL 680 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 712 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 770 Query: 221 K 221 + Sbjct: 771 R 771 >gi|108802827|gb|ABG21364.1| eukaryotic translation initiation factor 2 alpha kinase 2 [Mesocricetus auratus] Length = 473 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 26/54 (48%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 H K VT YK F +GP HD RFT V I G + +K+ A+ AA Sbjct: 17 HQKHRVTITYKHLFTTGPPHDRRFTFQVIIDGEEFPEAEGKTKQEAKNAAAKLA 70 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 16/37 (43%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF I G +K+ A+Q+AA E ++ Sbjct: 122 QRFCYKCIIGLKTYGIGSGATKQEAKQLAAKEAYQKL 158 >gi|332810381|ref|XP_513841.3| PREDICTED: double-stranded RNA-specific adenosine deaminase [Pan troglodytes] Length = 931 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 207 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 265 Query: 215 AAAEVL 220 AA + + Sbjct: 266 AAMKAM 271 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 318 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 376 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 377 AAEEAMKAL 385 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 436 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 494 Query: 221 K 221 + Sbjct: 495 R 495 >gi|170095525|ref|XP_001878983.1| predicted protein [Laccaria bicolor S238N-H82] gi|164646287|gb|EDR10533.1| predicted protein [Laccaria bicolor S238N-H82] Length = 232 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 12/133 (9%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +S L +A + +++ + LEF+GDR++ L S L+ + + + + V L Sbjct: 35 KSRLRRA---QNSVKRSKDNNDLLEFIGDRVVNLACS-LIVDKVKESSDHHMFVGR-VLS 89 Query: 80 SAETCSQVARELDLASFIRVSS--DLRKDVCSFMTSI-----QADVVESLIAALYLDGGI 132 + +T ++A +LDL + D + +I AD+ ES A+Y + G Sbjct: 90 NNDTLGRIAYQLDLHKSAHLDQRDDFEVTEWNPRHAISPPKALADLFESYAGAVYEEHGW 149 Query: 133 EVAGTFVDKYWKQ 145 E ++ + + Sbjct: 150 ERVMDWLKQIFTP 162 >gi|195391980|ref|XP_002054637.1| GJ24564 [Drosophila virilis] gi|194152723|gb|EDW68157.1| GJ24564 [Drosophila virilis] Length = 321 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 77/237 (32%), Gaps = 39/237 (16%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55 KR+ F LL+ A T + +H QE +L G I + Sbjct: 72 KRLNEEFQ-LPLLQTAFTQRTYAHQEQERQRMLGIAEADLQTADNSQLAAKGAHIAKAYV 130 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 L + + L+ ET + V+ L I + Sbjct: 131 EAYLQHALPKVPSAGHQAIASYLLGTETLAHVSTHLGTKELIF------STEYPPSSETL 184 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQ---EWAHA 167 A ++++I AL G+E A FV + ++ L+ + LQ E Sbjct: 185 AQTLQAIIGALADSSGVERAFLFVRDFICTQLNQKDLLEIWTPEQ----PLQLLSEVCTE 240 Query: 168 KFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + PE ++ G + F V + + +G + + A + AA + L+ Sbjct: 241 RQLGEPEPRLLGDCGK--NTVLAAFQVGIYANRQLLGKGFGENVQTATETAAIDALQ 295 >gi|2326524|emb|CAA55967.1| IFI-4 [Homo sapiens] gi|12711292|emb|CAA67169.1| dsRNA adenosine deaminase [Homo sapiens] Length = 931 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 207 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 265 Query: 215 AAAEVL 220 AA + + Sbjct: 266 AAMKAM 271 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 318 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 376 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 377 AAEEAMKAL 385 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 436 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 494 Query: 221 K 221 + Sbjct: 495 R 495 >gi|70167113|ref|NP_001020278.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo sapiens] gi|301601658|ref|NP_001180424.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo sapiens] gi|55666218|emb|CAH71907.1| adenosine deaminase, RNA-specific [Homo sapiens] gi|55960911|emb|CAI16183.1| adenosine deaminase, RNA-specific [Homo sapiens] gi|55961272|emb|CAI17375.1| adenosine deaminase, RNA-specific [Homo sapiens] gi|119573568|gb|EAW53183.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens] gi|119573572|gb|EAW53187.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens] Length = 931 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 207 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 265 Query: 215 AAAEVL 220 AA + + Sbjct: 266 AAMKAM 271 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 318 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 376 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 377 AAEEAMKAL 385 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 436 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 494 Query: 221 K 221 + Sbjct: 495 R 495 >gi|195045715|ref|XP_001992024.1| GH24441 [Drosophila grimshawi] gi|193892865|gb|EDV91731.1| GH24441 [Drosophila grimshawi] Length = 633 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E YK+ ++GP H P FT+ VE+ G G SK+ A AAA L Sbjct: 63 LNELRQGL-----IYKLESQTGPVHAPLFTISVEVDGQKY-MGQGRSKKVARIEAAATAL 116 Query: 221 K 221 + Sbjct: 117 R 117 >gi|225438954|ref|XP_002284222.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 542 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 4/139 (2%) Query: 21 SLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 +LL A H S + + + RL FLG +L L + + + R Sbjct: 171 ALLYLAFQHPSCDRANARHVRSGHSRLWFLGQYVLELAFAEYFLQRYPRESPAPMRERVF 230 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 L+ Q + L + + D+ + + V +L A+YL G+ Sbjct: 231 ELIGKRNLPQWIKAASLQNLVFPFDDMDRLIRKEREPPVKSVFWALFGAIYLCYGMPEVY 290 Query: 137 TFVDKYWKQRALKSGKFRR 155 + + + + Sbjct: 291 RVLFEVFGMDPEHEDCQPK 309 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 10/147 (6%) Query: 18 ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + YERLE++G +I ++++ L A L Sbjct: 396 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQ 455 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFMTSIQADVVESLIAALYL 128 + L+ + C + R+ L FI S + + V +++ YL Sbjct: 456 EKHRRLLMNKFCGRYLRDKYLHRFIIYSEQVQDSYEHNRRLRNPAT-TAVQQAIHGLSYL 514 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR 155 G + + + ++ R Sbjct: 515 VYGKPDVRRLMFEVFDFEQIQPKPVLR 541 >gi|119573573|gb|EAW53188.1| adenosine deaminase, RNA-specific, isoform CRA_e [Homo sapiens] Length = 905 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 207 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 265 Query: 215 AAAEVL 220 AA + + Sbjct: 266 AAMKAM 271 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 318 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 376 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 377 AAEEAMKAL 385 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 436 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 494 Query: 221 K 221 + Sbjct: 495 R 495 >gi|297481628|ref|XP_002692232.1| PREDICTED: adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Bos taurus] gi|296481330|gb|DAA23445.1| adenosine deaminase, RNA-specific, B2 [Bos taurus] Length = 785 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + ++++ ++GP H P F V V+++GL +G +K+ A+ AA Sbjct: 126 PKNALVQL--HELRPGLQFRMVSQTGPVHAPIFAVAVDVNGLT-FEGTGPTKKKAKMRAA 182 Query: 217 AEVLK 221 L+ Sbjct: 183 ELALR 187 >gi|194744759|ref|XP_001954860.1| GF18480 [Drosophila ananassae] gi|190627897|gb|EDV43421.1| GF18480 [Drosophila ananassae] Length = 871 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 1/67 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEV 219 L E P Y + +GP H F VEI+G +K+ A+ AA Sbjct: 802 LNELTSKNKWTPPHYTLRENTGPPHSRTFLFSVEINGQTYTPDRGCNNKKEAKLNAAKLC 861 Query: 220 LKREGIW 226 L GI Sbjct: 862 LCALGIL 868 >gi|316973020|gb|EFV56654.1| conserved hypothetical protein [Trichinella spiralis] Length = 400 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 85/224 (37%), Gaps = 23/224 (10%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ RIG + L +AL S +E ER + L D + ++ + Sbjct: 91 ALKSRIGTNLND-DTLRRALIDRSYV--IREIDERKQLL-DASSNVEFASSVLTDIQDNT 146 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 + + + S E ++++R+L + + D + S+ + + S++ A+ Sbjct: 147 DFIRKAAHDFITSEEKLAKISRQLGIYDLL------MADNFPYNNSLMSSSLRSIVGAIL 200 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGK----FRRDA-K--TELQEWAHAKFGVTPEYKVTFR 180 DG AG FV + + + + ++ K T L E TPE ++ Sbjct: 201 FDGNEAEAGYFVQDFVLTQLINVDINELWYFKEPLKILTALLE---KNDRGTPEPRILRS 257 Query: 181 SGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SG P + V + A G S A ++AA + LK Sbjct: 258 SGEFTVTPVYVVGIYCDKKLIAAGE--SVLIATEMAARDCLKNL 299 >gi|321463701|gb|EFX74715.1| hypothetical protein DAPPUDRAFT_108624 [Daphnia pulex] Length = 257 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL-ISTLLFNHF 63 LE + Y F N+ L +AL H S + ES ++ EFLGD+ LG + + L + Sbjct: 96 ELEKLETILKYKFTNKLFLLQALRHPSAVSALDESNDKFEFLGDKQLGNINVQHKLISRA 155 Query: 64 DSAKEGELSVRFNSLVSAETCS 85 LS V +++ Sbjct: 156 TFLWPPTLS--RADPVVSDSLH 175 >gi|326480181|gb|EGE04191.1| hypothetical protein TEQG_03222 [Trichophyton equinum CBS 127.97] Length = 604 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 7/135 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E +GY F ++ LL KALT + S + RL LG ++ L+ + + + Sbjct: 10 VEDIVGYKFKSKPLLLKALTAAGSELSDYDGNRRLAQLGTALVEFLLVYIGYRQ--NVPR 67 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G + S E C+ V + + S+I SS ++ A V +IAA ++ Sbjct: 68 GYTTRFKIRFGSNEHCAAVIKRTGIDSYISYSSKP----GVKAPTVLAKSVNVIIAATFV 123 Query: 129 DG-GIEVAGTFVDKY 142 D I VA + + Sbjct: 124 DSRDISVALRTMLRL 138 >gi|147815305|emb|CAN72245.1| hypothetical protein VITISV_028705 [Vitis vinifera] Length = 518 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 4/139 (2%) Query: 21 SLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 +LL A H S + + + RL FLG +L L + + + R Sbjct: 171 ALLYLAFQHPSCDRANARHVRSGHSRLWFLGQYVLELAFAEYFLQRYPRESPAPMRERVF 230 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 L+ Q + L + + D+ + + V +L A+YL G+ Sbjct: 231 ELIGKRNLPQWIKAASLQNLVFPFDDMDRLIRKEREPPVKSVFWALFGAIYLCYGMPEVY 290 Query: 137 TFVDKYWKQRALKSGKFRR 155 + + + + Sbjct: 291 RVLFEVFGMDPEHEDCQPK 309 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 5/99 (5%) Query: 18 ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + YERLE++G +I ++++ L A L Sbjct: 388 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQ 447 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 + L+ + C + R+ L FI S ++ Sbjct: 448 EKHRRLLMNKFCGRYLRDKYLHRFIIYSEQVQDSYEHNR 486 >gi|328784563|ref|XP_003250468.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 [Apis mellifera] Length = 763 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 158 KTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT L E A + +Y++T GP H RFTV +++ S + A+ Sbjct: 182 KTPMCLLNELA-RFNKIQHQYRLTNEQGPAHKKRFTVTLKLGEEEY-VAEGPSIKKAQHS 239 Query: 215 AAAEVLKR 222 AA E L + Sbjct: 240 AATEALTK 247 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 1/72 (1%) Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + Y + R+ + + L + AK P Y + G F + V + Sbjct: 497 RNLIKVYQEPRSESDAAEEVNPVSRLDQIQQAKREKEPVYNLIEEKGAPRRKEFVMEVTM 556 Query: 196 SGLAPAQGMDCS 207 G AQG+ + Sbjct: 557 -GQHSAQGIGPN 567 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 2/79 (2%) Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 A + + + E A + ++V G H F + G Sbjct: 393 EAKDPIAELKSPVSLVHEKALKRGLP-VSFEVVSEIGKPHIRTFRTKCTVGDKV-TLGEG 450 Query: 206 CSKRAAEQVAAAEVLKREG 224 SK+ +++ AA +L+ Sbjct: 451 PSKKVSKKHAAEFMLEELN 469 >gi|328720070|ref|XP_003246941.1| PREDICTED: hypothetical protein LOC100572663 [Acyrthosiphon pisum] Length = 474 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 13/86 (15%) Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR------FTVVVEIS 196 + S + T L E+A V P Y + HD F V + Sbjct: 7 IDPQDAYSSSSDKSPITILNEYAAQNHLVVPHYSLI------HDGSSLSIVSFKYSVNLD 60 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKR 222 A+G SK+ A+Q+AA+ +LK+ Sbjct: 61 -KFVAEGKGSSKKEAKQLAASNLLKK 85 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 + + S + T L E+A V P Y + + + F V + A+ Sbjct: 246 QQDTHVDSSLSNKQPVTILNEYATKNHLV-PHYNLIYDGSSLNIASFKYSVNLD-KFVAE 303 Query: 203 GMDCSKRAAEQVAAAEVLKR 222 G SK+ A+ +AA+ +LK+ Sbjct: 304 GEATSKKEAKHLAASNLLKK 323 Score = 41.6 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E+A V P Y + + + F V + A+G SKR A+ AA +LK+ Sbjct: 147 EYATKNHFV-PHYNLIYDGSSLNIASFKYSVNLD-KIVAEGEGFSKREAKLWAATNLLKK 204 >gi|119573569|gb|EAW53184.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens] gi|119573574|gb|EAW53189.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens] Length = 886 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 207 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 265 Query: 215 AAAEVL 220 AA + + Sbjct: 266 AAMKAM 271 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP H+P+F V + SK+ A+Q+ Sbjct: 318 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 376 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 377 AAEEAMKAL 385 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 417 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 475 Query: 221 K 221 + Sbjct: 476 R 476 >gi|307213091|gb|EFN88613.1| Double-stranded RNA-binding protein Staufen-like protein 2 [Harpegnathos saltator] Length = 797 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 158 KTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT L E A V +Y++T GP H RFTV +++ S + A+ Sbjct: 192 KTPMCLLNELA-RFNRVQHQYRLTNEQGPAHKKRFTVTLKLGEEEY-IAEGPSIKKAQHS 249 Query: 215 AAAEVLKR 222 AA E L + Sbjct: 250 AATEALTK 257 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K G+ ++V SG H F + G SK+ +++ AA +L+ Sbjct: 427 KRGLPVSFEVVSESGKPHIRTFMTKCTVGDKV-TVGEGSSKKVSKKRAAELMLEEL 481 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 1/72 (1%) Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + Y + R+ + + L + AK P Y + G F + V + Sbjct: 510 RNLIKVYQEPRSENEAAEEVNPVSRLVQIQQAKREREPVYNLIDEKGAPRRREFVMEVTM 569 Query: 196 SGLAPAQGMDCS 207 G AQG+ + Sbjct: 570 -GQHSAQGIGPN 580 >gi|109101248|ref|XP_001108840.1| PREDICTED: 39S ribosomal protein L44, mitochondrial [Macaca mulatta] Length = 332 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 11/191 (5%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 +S + L G ++ L + F + + L E VAR L + + Sbjct: 120 KSNQELSEQGTSFSQTCLTQFLEDEFPDLPTEGIRNLVDFLTGEEVVCHVARNLAVEQ-L 178 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155 +S + ++ ++I AL G E F+ + + F Sbjct: 179 TLSEEFPVP-----PTVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWK 233 Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212 D L E + PE ++T +SG P + V + A+G + AE Sbjct: 234 IIDPMGLLVEELKKRNISAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAE 293 Query: 213 QVAAAEVLKRE 223 + AA L++ Sbjct: 294 EEAARVALRKL 304 >gi|321463679|gb|EFX74693.1| hypothetical protein DAPPUDRAFT_251616 [Daphnia pulex] Length = 233 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 67/196 (34%), Gaps = 47/196 (23%) Query: 50 ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS-------------- 95 +L LL+ST LF++ + LS +++ S + +A + Sbjct: 2 LLSLLVSTHLFDYSEEYTPSHLSRFRSAITSNDCFGVLAVKFGFHKDLRGAPIEVQQRVN 61 Query: 96 -----FIRV----SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG------TFVD 140 F+R+ ++ + + AD+ E++ A+Y D G F+ Sbjct: 62 EFADLFLRLKATPNNGYATTESLVVPGVLADLFEAVAGAIYKDSGFSRIAVLGSFNPFLR 121 Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + +L + E T ++G +F+ + I Sbjct: 122 QAYDHFSLPAD-----------EILQELKPAMITEISTLKNG-----KFSCKISIDNND- 164 Query: 201 AQGMDCSKRAAEQVAA 216 G SKR A ++AA Sbjct: 165 FIGAGTSKRNA-KLAA 179 >gi|114583638|ref|XP_526045.2| PREDICTED: 39S ribosomal protein L44, mitochondrial [Pan troglodytes] Length = 332 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 11/191 (5%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 +S + L G ++ L + + + + L E VAR L + + Sbjct: 120 KSNQELSEQGTSFSQTCLTQFLEDEYPDMPTEGIKNLVDFLTGEEVVCHVARNLAVEQ-L 178 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155 +S + ++ ++I AL G E F+ + + F Sbjct: 179 TLSEEFPVP-----PTVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWK 233 Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212 + L E + PE ++T +SG P + V + A+G + AE Sbjct: 234 IINPMGLLVEELKKRNVSPPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAE 293 Query: 213 QVAAAEVLKRE 223 + AA L++ Sbjct: 294 EEAARVALRKL 304 >gi|224084072|ref|XP_002188254.1| PREDICTED: adenosine deaminase, RNA-specific [Taeniopygia guttata] Length = 926 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L E+ K G E+++ + GP HDPRF+ V++ + SK+ A+Q+ Sbjct: 329 KHPISILMEYGQ-KSGNIIEFQLLSQEGPPHDPRFSYCVKMGDQIFPAVVGNSKKGAKQM 387 Query: 215 AAAEVLK 221 AA +K Sbjct: 388 AAEVAVK 394 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ + L E++ + ++ + ++GP H+PRF I+G SK+ A+Q Sbjct: 213 EKNPVSGLTEYSQYTYQHC-DFIMLEQNGPSHEPRFKFQAVINGRQFPPAEAGSKKLAKQ 271 Query: 214 VAAAEVLK 221 AAA +K Sbjct: 272 EAAANAMK 279 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + + L E+A + E+K+ +SGP HDP+F ++ G +K+ + Sbjct: 443 LNVNPVSGLLEYARSNGFAA-EFKLIDQSGPPHDPKFVYQAKVGGRWFPAVTAHNKKQGK 501 Query: 213 QVAAAEVLK 221 Q AA L+ Sbjct: 502 QEAADAALR 510 >gi|300797105|ref|NP_001179517.1| double-stranded RNA-specific editase B2 [Bos taurus] Length = 734 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + ++++ ++GP H P F V V+++GL +G +K+ A+ AA Sbjct: 126 PKNALVQL--HELRPGLQFRMVSQTGPVHAPIFAVAVDVNGLT-FEGTGPTKKKAKMRAA 182 Query: 217 AEVLK 221 L+ Sbjct: 183 ELALR 187 >gi|170101705|ref|XP_001882069.1| predicted protein [Laccaria bicolor S238N-H82] gi|164642884|gb|EDR07138.1| predicted protein [Laccaria bicolor S238N-H82] Length = 76 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +L P Y+ RSGP H + ++V I + +G +++ A++ AA Sbjct: 7 QLNNKCQHYRKEMPIYE-EKRSGPAHAEVWNIIVTIKEIEYGRGEGSNRKRAKEAAAEVA 65 Query: 220 LKRE 223 LKR Sbjct: 66 LKRL 69 >gi|288923600|ref|ZP_06417710.1| double-stranded RNA binding domain protein [Frankia sp. EUN1f] gi|288345062|gb|EFC79481.1| double-stranded RNA binding domain protein [Frankia sp. EUN1f] Length = 110 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV-- 219 QE P+Y VT +GPDH RFT ++G +G SK+ AEQ AAA Sbjct: 2 QEQTALLGLGPPDYVVT-EAGPDHAKRFTAFARVAGEVLGEGEGGSKKEAEQRAAATAFA 60 Query: 220 -LKR 222 L++ Sbjct: 61 MLEK 64 >gi|194902968|ref|XP_001980797.1| GG16917 [Drosophila erecta] gi|190652500|gb|EDV49755.1| GG16917 [Drosophila erecta] Length = 892 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEV 219 L E P+YK+ GP H+ F VEI+G +K+ A+ AA Sbjct: 823 LNELTSKNKWTPPQYKLRQDIGPAHNRSFLFSVEINGQTYTPDRGCNNKKEAKLNAATLC 882 Query: 220 LKREGIW 226 L+ GI Sbjct: 883 LRALGIL 889 >gi|156396886|ref|XP_001637623.1| predicted protein [Nematostella vectensis] gi|156224737|gb|EDO45560.1| predicted protein [Nematostella vectensis] Length = 332 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 12/94 (12%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRIL--------GLL 54 A++ EKRIGY F+N+ L +ALTH+S S + + + F G +L + Sbjct: 190 AVQLQGFEKRIGYEFSNKLYLIQALTHASYSQNSPKHH----FFGHALLAEREGSNKKQV 245 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88 +++ F + + L + + A Sbjct: 246 VASFATTTFVTLALCLANNLRCVLTRYYSLATYA 279 >gi|322800091|gb|EFZ21197.1| hypothetical protein SINV_10966 [Solenopsis invicta] Length = 804 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +Y++T GP H RFTV +++ S + A+ AA E L + Sbjct: 217 QYRLTNEQGPAHKKRFTVTLKLGEEEY-VAEGPSIKKAQHSAATEALTK 264 Score = 55.1 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 1/72 (1%) Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + Y + RA + + L + AK P Y + G F + V + Sbjct: 516 RNLIKVYQEPRAENEAAEEVNPVSRLVQIQQAKREREPVYNLIDEKGAPRRREFVMEVTM 575 Query: 196 SGLAPAQGMDCS 207 G AQG+ + Sbjct: 576 -GQHSAQGIGPN 586 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K G+ ++V SG H F + G G SK+ +++ AA +L Sbjct: 433 KRGLPVSFEVVSESGKPHIRTFMTKCTV-GEKVTVGEGSSKKVSKKRAAELMLDEL 487 >gi|297624883|ref|YP_003706317.1| double-stranded RNA binding domain-containing protein [Truepera radiovictrix DSM 17093] gi|297166063|gb|ADI15774.1| double-stranded RNA binding domain protein [Truepera radiovictrix DSM 17093] Length = 157 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + K L E P + T GPDH+PRF V I G +G +KR AE+ Sbjct: 2 QHPKGTLIERCKQLRLGAPSFN-TRNLGPDHEPRFESEVLIQGEVYGRGEAGTKRDAERR 60 Query: 215 A 215 A Sbjct: 61 A 61 >gi|195383442|ref|XP_002050435.1| stau [Drosophila virilis] gi|194145232|gb|EDW61628.1| stau [Drosophila virilis] Length = 1100 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 3/88 (3%) Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVV 193 + K++ + + T+L + + P +++ ++G + R F + V Sbjct: 764 RKRLSAPLKEKTILELDDAENPITKLIQLQQTRKEKEPIFELIAKNGNETSRRREFVMEV 823 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLK 221 SG + A+G SK+ A++ AA +L+ Sbjct: 824 SASG-SIARGTGNSKKLAKRNAAQALLE 850 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++T GP H FTV +++ + A+ +AA++ ++ Sbjct: 394 QYRLTGERGPAHCKTFTVTLKLGEEEY-SADGFKIKKAQHLAASKAIE 440 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K +T +KV GP H F + G +G K+ +++ AA ++L Sbjct: 661 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKLSKKRAAEKMLSEL 715 >gi|7229532|gb|AAF42865.1|AF225924_1 staufen [Drosophila virilis] Length = 1062 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 3/88 (3%) Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVV 193 + K++ + + T+L + + P +++ ++G + R F + V Sbjct: 721 RKRLSAPLKEKTILELDDAENPITKLIQLQQTRKEKEPIFELIAKNGNETSRRREFVMEV 780 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLK 221 SG + A+G SK+ A++ AA +L+ Sbjct: 781 SASG-SIARGTGNSKKLAKRNAAQALLE 807 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++T GP H FTV +++ + A+ +AA++ ++ Sbjct: 351 QYRLTGERGPAHCKTFTVTLKLGEEEY-SADGFKIKKAQHLAASKAIE 397 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K +T +KV GP H F + G +G K+ +++ AA ++L Sbjct: 618 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKLSKKRAAEKMLSEL 672 >gi|195499487|ref|XP_002096969.1| GE25964 [Drosophila yakuba] gi|194183070|gb|EDW96681.1| GE25964 [Drosophila yakuba] Length = 908 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEV 219 L E P+YK+ GP H+ F VEI+G +K+ A+ AA Sbjct: 839 LNELTSKNKWTPPQYKLRQDIGPAHNRSFLFSVEINGQTYTPDRGCNNKKEAKLNAATLC 898 Query: 220 LKREGIW 226 L+ GI Sbjct: 899 LRALGIL 905 >gi|321254347|ref|XP_003193044.1| hypothetical protein CGB_C7350C [Cryptococcus gattii WM276] gi|317459513|gb|ADV21257.1| hypothetical protein CNC05030 [Cryptococcus gattii WM276] Length = 409 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 77/276 (27%), Gaps = 82/276 (29%) Query: 27 LTHSSISHSYQES-------YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LTH S +S E L LG+ +LGL S L + L + V Sbjct: 64 LTHPSYRSQQLDSAELAAQTNELLATLGNSLLGLFASEHLSAVYPYLPTKPLQHAVTAYV 123 Query: 80 SAETCSQVARELDL--------------------ASFIRVSS------------DLRKD- 106 +C VAR L + +R S Sbjct: 124 GPASCLSVARSLGVAVQGGGNTGLPGLGAGSSSAGVAVRWSKTALAERNWRDTRGEAAQG 183 Query: 107 ------VCSFMTSIQ-------------------ADVVESLIAALYLDGGIEVAGTFVDK 141 F I+ A V + + +Y + GI A F Sbjct: 184 PLKVPVGKRFKKYIKEEDQDVTVQARRETHEDVVASAVRAFVGLIYQEQGIHAARAFTHA 243 Query: 142 YWKQRALKSGKFRRDAKTELQEWA--------------HAKFGVTPEYKVTFRSGPDH-D 186 ++ RAL +Q + + + ++ +G Sbjct: 244 HFLSRALDLSSLIT-PTNPMQTLSSVVSSHLSSTAGVPASSSHTLIQPRLLASTGTASQA 302 Query: 187 PRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLK 221 P F + + + G+ A+G SK A+ AA L+ Sbjct: 303 PLFLIGLFLPSGIKLAEGHGSSKAMAQHRAAVNALQ 338 >gi|255729534|ref|XP_002549692.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240132761|gb|EER32318.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 390 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 48/229 (20%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD------ 92 + L+ LG +L ++ L + + +SL+ ++ S++++ Sbjct: 126 NNFGLKVLGKSLLTYYVTEYLLLTYPRLPTAIHNAAVDSLMGSQALSEISKSWGIEVDSI 185 Query: 93 --LASFI-------------RVSSDLRKDV--CSFMTSI-------------------QA 116 L F+ +S + + D + + Sbjct: 186 SKLDRFLGKESEFMKFGRLRYLSENEKSDNFYSKGNAKVDGVVEVINNEGVVTPEDMAYS 245 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHA-KFGVTP 173 V ++I LY G A F+ + R + + + EL +F Sbjct: 246 TVTTAVIGGLYTHCGESAAKEFIKDHILSRKVPLDQMFQFNQPVKELVRLCDKLEFKEPV 305 Query: 174 EYKVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 ++ +G H P+F V + +G+ S + AE A L Sbjct: 306 SIRLIAETGRLSAH-PQFLAGVFVGSEKLGEGIGGSLKEAETRATVNAL 353 >gi|200210|gb|AAA39885.1| 65 kD protein kinase [Mus musculus] Length = 515 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 21/53 (39%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GV YK SGP HD RFT V I + SK+ A AA Sbjct: 18 QMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLA 70 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 16/37 (43%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF +I G K+ A+Q+AA E ++ Sbjct: 124 QRFICKCKIGQTMYGTGSGVIKQEAKQLAAKEAYQKL 160 >gi|332031602|gb|EGI71074.1| Double-stranded RNA-binding protein Staufen-like protein 2 [Acromyrmex echinatior] Length = 804 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +Y++T GP H RFTV +++ S + A+ AA E L + Sbjct: 216 QYRLTNEQGPAHKKRFTVTLKLGEEEY-VAEGPSIKKAQHSAATEALTK 263 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 1/72 (1%) Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + Y + RA + + L + AK P Y + G F + V + Sbjct: 516 RNLIKVYQEPRAENEAAEEVNPVSRLVQIQQAKREREPVYNLIDEKGAPRRREFVMEVTM 575 Query: 196 SGLAPAQGMDCS 207 G AQG+ + Sbjct: 576 -GQHSAQGIGPN 586 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K G+ ++V SG H F + G G SK+ +++ AA +L Sbjct: 433 KRGLPVSFEVVSESGKPHIRTFMTKCTV-GEKVTVGEGSSKKVSKKRAAELMLDEL 487 >gi|255584888|ref|XP_002533159.1| RNA binding protein, putative [Ricinus communis] gi|223527031|gb|EEF29218.1| RNA binding protein, putative [Ricinus communis] Length = 532 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 4/139 (2%) Query: 21 SLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 +LL A H S + + + RL FLG +L L + + R Sbjct: 164 TLLYLAFQHPSCERTNARHVKYGHSRLCFLGQYVLELAFCEFFLQRYPRESPAPMRERVF 223 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +L+ + + L + I D+ K + V +L A+YL G+ Sbjct: 224 ALIGKRNLPKWIKAASLQNLIFPYDDIDKLLRKDREPPVKSVFWALFGAIYLCFGMPEVY 283 Query: 137 TFVDKYWKQRALKSGKFRR 155 + + + + Sbjct: 284 RVLFEVFGMDPEAEDCQPK 302 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 8/144 (5%) Query: 18 ANRSL---LEKALTHSS-ISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + YERLEF+G +I L+++ L A L Sbjct: 389 RNIELGLGLQLCFLHPSKYKFEHPRFCYERLEFVGQKIQDLVLAERLLMKHLDAPGKWLQ 448 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSS---DLRKDVCSFMTSIQADVVESLIAALYLD 129 R L+ + C + R+ L FI S D ++ V ++L Y Sbjct: 449 ERHRRLLMNKFCGRYLRDKHLHHFIVYSEQVIDAYENNRRLRNPATTAVQQALHGLSYTV 508 Query: 130 GGIEVAGTFVDKYWKQRALKSGKF 153 G + + + ++ Sbjct: 509 YGKPDVRRLMFEVFDFEQIQPKAV 532 >gi|156387816|ref|XP_001634398.1| predicted protein [Nematostella vectensis] gi|156221481|gb|EDO42335.1| predicted protein [Nematostella vectensis] Length = 118 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 157 AKTELQEWA--HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT + E + G+ +++ G H+ FT+ + G SK+ A+Q Sbjct: 32 PKTPISELLELAVQMGIKVDFEQVSAVGMPHNQTFTINCKAGDFT-GIGTGPSKKKAKQN 90 Query: 215 AAAEVLKR 222 AA+ L++ Sbjct: 91 AASATLEK 98 >gi|193787107|dbj|BAG52313.1| unnamed protein product [Homo sapiens] Length = 579 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 54/160 (33%), Gaps = 25/160 (15%) Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD---VVESLIA----AL 126 + V+ + + R++ R L K+ I D + L+A A Sbjct: 419 LRAAPVTGGMGAVLMRKMGW----REGEGLEKNKEGNKEPILVDFKTDRKGLVAVGERAQ 474 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 G A + + L E + + PE+ + SGPDH Sbjct: 475 KRSGNFSAAMK-------------DLSGKHPVSALMEICNKRRWQPPEFLLVHDSGPDHR 521 Query: 187 PRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKREGI 225 F V I+G A +K+ A+ AA VL+ G+ Sbjct: 522 KHFLFRVLINGSAYQPSFASPNKKHAKATAATVVLQAMGL 561 >gi|6755160|ref|NP_035293.1| interferon-induced, double-stranded RNA-activated protein kinase [Mus musculus] gi|2507204|sp|Q03963|E2AK2_MOUSE RecName: Full=Interferon-induced, double-stranded RNA-activated protein kinase; AltName: Full=Eukaryotic translation initiation factor 2-alpha kinase 2; Short=eIF-2A protein kinase 2; AltName: Full=Interferon-inducible RNA-dependent protein kinase; AltName: Full=P1/eIF-2A protein kinase; AltName: Full=Protein kinase RNA-activated; Short=PKR; AltName: Full=Serine/threonine-protein kinase TIK; AltName: Full=p68 kinase gi|536918|gb|AAC24729.1| interferon-inducible RNA-dependent protein kinase [Mus musculus] gi|26324546|dbj|BAC26027.1| unnamed protein product [Mus musculus] Length = 515 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 21/53 (39%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GV YK SGP HD RFT V I + SK+ A AA Sbjct: 18 QMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLA 70 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 17/37 (45%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF +I G +K+ A+Q+AA E ++ Sbjct: 124 QRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKL 160 >gi|224129272|ref|XP_002328933.1| predicted protein [Populus trichocarpa] gi|222839363|gb|EEE77700.1| predicted protein [Populus trichocarpa] Length = 133 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212 K +LQE A P Y R GPDH PRF V +G S R AE Sbjct: 2 FKNQLQELAQRSCFNLPAYACI-REGPDHAPRFKASVNFNGEIFES---PSYCTTLRQAE 57 Query: 213 QVAAAEVLK 221 AA L Sbjct: 58 HAAAEVALN 66 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 133 EVAGTFVDKYWKQRALKSGKFRRD----AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 EVA + R+L + +D K LQE AH P Y RSGP H P Sbjct: 62 EVALNVLSSRGPARSLTARVLMKDETGIYKNLLQETAHRAGLNLPAYTTV-RSGPGHVPV 120 Query: 189 FTVVVEISG 197 FT VE++G Sbjct: 121 FTCTVELAG 129 >gi|327291984|ref|XP_003230700.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like, partial [Anolis carolinensis] Length = 404 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 1/97 (1%) Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LY D + A + + ++ + L E+A V E+++ + GP Sbjct: 52 SLYEDSSLSEAELQAEPEPSSLTPQLCTTGKNPVSALMEYAQKSGSVC-EFQLLAQDGPP 110 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 HDP+F V+I + SK+ A+Q+AA ++ Sbjct: 111 HDPKFKYCVKIGDQVFPAVVSNSKKGAKQMAAEAAIR 147 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L E+A A E+K+ ++GP HDP+F ++ G SK+ +Q A Sbjct: 193 NPVSGLLEYARANAFAA-EFKLIEQTGPPHDPKFVFQAKVGGRWFPAVTAHSKKQGKQEA 251 Query: 216 AAEVLK 221 A L+ Sbjct: 252 ADAALR 257 >gi|307184289|gb|EFN70747.1| Double-stranded RNA-binding protein Staufen-like protein 2 [Camponotus floridanus] Length = 607 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +Y++T GP H RFTV +++ S + A+ AA E L + Sbjct: 22 QYRLTNEQGPAHKKRFTVTLKLGEEEY-VAEGPSIKKAQHSAATEALTK 69 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K G++ ++V SG H F + G SK+ +++ AA +L+ Sbjct: 238 KRGLSVSFEVVSESGKPHIRTFMTKCTVGDKV-TVGEGSSKKVSKKRAAELMLEEL 292 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 1/72 (1%) Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + Y + R+ + + L + AK P Y + G F + V + Sbjct: 321 RNLIKVYQEPRSESEAAEEVNPVSRLVQIQQAKREREPVYNLIDEKGAPRRREFVMEVTM 380 Query: 196 SGLAPAQGMDCS 207 G AQG+ + Sbjct: 381 -GQHSAQGIGPN 391 >gi|1932815|gb|AAB51688.1| dsRNA adenosine deaminase [Xenopus laevis] Length = 1124 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ + L E K G E+++ + GP HDP+FT V+I + SK+ A+Q Sbjct: 531 NKNPISVLMEHGQ-KSGSMCEFQLVQQEGPPHDPKFTYTVKIGNQTFPPVVANSKKMAKQ 589 Query: 214 VAAAEVLKRE 223 +AA ++ Sbjct: 590 LAAEAAVREL 599 Score = 58.2 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 5/70 (7%) Query: 154 RRDAKTELQEWAH--AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 ++ + L E+ H ++ ++ + +SGP HDPRF + I G SK+ A Sbjct: 426 EKNPVSGLLEFTHYCSQQC---DFVLLNQSGPSHDPRFKIQAVIDGRHFPVAEASSKKTA 482 Query: 212 EQVAAAEVLK 221 ++ AA+ L+ Sbjct: 483 KKDAASLALR 492 Score = 40.4 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + + L E+A AK E+K+ ++GP HDP+F ++ G Sbjct: 650 NPVSGLLEYARAKGFAA-EFKMVNQTGPPHDPKFVFQAKVGGR 691 >gi|195152501|ref|XP_002017175.1| GL22164 [Drosophila persimilis] gi|194112232|gb|EDW34275.1| GL22164 [Drosophila persimilis] Length = 322 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 76/233 (32%), Gaps = 31/233 (13%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55 KR+G F L ++A T S +H +E + L +G I + Sbjct: 72 KRLGENFELPQL-QEAFTQRSYAHQEEEKQRKLGIEEGDLKIADNQELAKMGSHIARAYV 130 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 L + + L+S ET + V+ L I Sbjct: 131 EAFLKQSLPKVPKEGQEAIASYLLSTETLANVSSHLGTKDLI------FTTEYPPSPESL 184 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGV 171 A+ ++++I AL G+E A FV + Q+ L + L+E + Sbjct: 185 AESLQAVIGALADSSGVERAFLFVRDFICTQLNQKDLLDLWTPKQPVQLLEEICQQRKLG 244 Query: 172 TPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 E ++ G + + V + + +G A + AA + L+ Sbjct: 245 EVEPRLLGDCGK--NTVLAAYHVGIYANRQLLGKGFGEDVPTATETAALDALQ 295 >gi|198453837|ref|XP_001359359.2| GA15248 [Drosophila pseudoobscura pseudoobscura] gi|198132536|gb|EAL28505.2| GA15248 [Drosophila pseudoobscura pseudoobscura] Length = 322 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 76/233 (32%), Gaps = 31/233 (13%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55 KR+G F L ++A T S +H +E + L +G I + Sbjct: 72 KRLGENFELPQL-QEAFTQRSYAHQEEEKQRKLGIEEGDLKIADNQELAKMGSHIARAYV 130 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 L + + L+S ET + V+ L I Sbjct: 131 EAFLKQSLPKVPKEGQEAIASYLLSTETLANVSSHLGTKDLI------FTTEYPPSPESL 184 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGV 171 A+ ++++I AL G+E A FV + Q+ L + L+E + Sbjct: 185 AESLQAVIGALADSSGVERAFLFVRDFICTQLNQKDLLDLWTPKQPVQLLEEICQQRKLG 244 Query: 172 TPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 E ++ G + + V + + +G A + AA + L+ Sbjct: 245 EVEPRLLGDCGK--NTVLAAYHVGIYANRQLLGKGFGEDVPTATETAALDALQ 295 >gi|326935945|ref|XP_003214024.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like [Meleagris gallopavo] Length = 852 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ + L E++ + E+ + +SGP H+PRF I+G SK+ A+Q Sbjct: 139 EKNPVSGLTEYSQFTYQHC-EFTMLEQSGPSHEPRFKFQALINGRPFPPAEAGSKKLAKQ 197 Query: 214 VAAAEVLK 221 AAA +K Sbjct: 198 EAAANAMK 205 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L E+ K G T E+ + + GP HDPRF+ V++ + SK+ A+Q+ Sbjct: 255 KHPISVLMEYGQ-KSGNTIEFLLLSQDGPSHDPRFSYCVKMGDQIFPAVVGNSKKGAKQM 313 Query: 215 AAAEVLK 221 AA +K Sbjct: 314 AAEVAVK 320 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + + L E+A + E+K+ ++GP HDP+F ++ G SK+ + Sbjct: 370 LNVNPVSGLLEYARSNGFAA-EFKLIDQTGPPHDPKFVYQAKVGGRWFPAVTAHSKKQGK 428 Query: 213 QVAAAEVLK 221 Q AA L+ Sbjct: 429 QEAADAALR 437 >gi|332246671|ref|XP_003272476.1| PREDICTED: 39S ribosomal protein L44, mitochondrial-like [Nomascus leucogenys] Length = 340 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 11/191 (5%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 +S + L G ++ L + + + + L E VAR L + + Sbjct: 120 KSNQELSEQGTSFSQTCLTQFLEDEYPDLPTEGIKNLTDFLTGEEVVCHVARNLAVEQ-L 178 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155 +S + ++ ++I AL G E F+ + + F Sbjct: 179 TLSEEFPVP-----PTVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWK 233 Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212 + L E + PE ++T +SG P + V + A+G + AE Sbjct: 234 IINPMGLLVEELKKRNISAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAE 293 Query: 213 QVAAAEVLKRE 223 + AA L++ Sbjct: 294 EEAARVALRKL 304 >gi|16741143|gb|AAH16422.1| Eif2ak2 protein [Mus musculus] gi|117616338|gb|ABK42187.1| Prkr [synthetic construct] gi|148706522|gb|EDL38469.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Mus musculus] Length = 515 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 21/53 (39%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GV YK SGP HD RFT V I + SK+ A AA Sbjct: 18 QMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGKSKQEARNAAAKLA 70 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 17/37 (45%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF +I G +K+ A+Q+AA E ++ Sbjct: 124 QRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKL 160 >gi|299756242|ref|XP_001829190.2| hypothetical protein CC1G_01870 [Coprinopsis cinerea okayama7#130] gi|298411587|gb|EAU92825.2| hypothetical protein CC1G_01870 [Coprinopsis cinerea okayama7#130] Length = 252 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 89/241 (36%), Gaps = 52/241 (21%) Query: 19 NRSLLEKALTHSSISHSYQESYE-----RLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 + ++ +A H++ + + RL+ +G ++L + ++ F+ + E+ Sbjct: 12 DLEIILEAF-HATAQSTDLNQRQWGDKARLQEIGVQVLHMALTAHYFSVKPNLSATEIQS 70 Query: 74 RFNSLVSAETCSQVARELD-LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + + + + D L F+ + KD + + E+ + AL+ G+ Sbjct: 71 KVSEVRHGGRIHEWVGRYDNLIRFV-----MDKDSPAER----GQLFEAYVGALWYSKGM 121 Query: 133 EVAGTFVDKYWKQRA---LKSGKFRRD-----AKTELQ---------------------- 162 + ++ + +D +++ Q Sbjct: 122 KATQKWISDLLGDNVYVKDEPDDTAQDVTGDSSQSPPQYSPTATTTSGPPHPSVAPAIPL 181 Query: 163 ----EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 E A A+ + ++ +F SGP H P +TV ++G + +G + +K+ A+ AA+ Sbjct: 182 AHVNELA-AQRKINMTWEASF-SGPPHMPIWTVRCLVNGQSYGEGTNANKKKAQAEAASN 239 Query: 219 V 219 Sbjct: 240 A 240 >gi|157118092|ref|XP_001659004.1| mitochondrial ribosomal protein, L44, putative [Aedes aegypti] gi|108875856|gb|EAT40081.1| mitochondrial ribosomal protein, L44, putative [Aedes aegypti] Length = 327 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 79/239 (33%), Gaps = 39/239 (16%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ---------------ESYERLEFLGDRILGLLI 55 KR+ F + ++L++A TH S + + L LG+R++ + Sbjct: 70 KRLSEQF-DTAVLQQAFTHRSFIAQEEQRQVDVGIEKPELGLKDNRELVQLGERLIEEYV 128 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + + + L S E + V++ L I + D S+ Sbjct: 129 EAFVLTALPRLPNEGIRSIVSGLTSQEKLANVSKHLGTKDIILAAEFPVTD------SLL 182 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE------LQEWAHAKF 169 AD +++ AL G E A FV + + S + D T L+E+ K Sbjct: 183 ADTFCAVVGALQKSSGDERAFLFVRDFVCTQL--SQQDVNDYWTIESPLDLLREYCKEKK 240 Query: 170 GVTPEYKVTFRSG-----PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE + G H V + + G A AA + L++ Sbjct: 241 LGEPEPRSIGLVGKNTLLAAH----RVGIYCNKQFVGSGYGEDIDTAIDEAARDCLRQL 295 >gi|197100516|ref|NP_001127183.1| 39S ribosomal protein L44, mitochondrial precursor [Pongo abelii] gi|68053049|sp|Q5REY8|RM44_PONAB RecName: Full=39S ribosomal protein L44, mitochondrial; Short=L44mt; Short=MRP-L44; Flags: Precursor gi|55725777|emb|CAH89669.1| hypothetical protein [Pongo abelii] Length = 332 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 11/191 (5%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 +S + L G ++ L + + + L + VAR L + + Sbjct: 120 KSNQELSEQGTSFSQTCLTQFLEDEYPDLPTEGIKNLVEFLTGEDVVCHVARNLAVEQ-L 178 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155 +S + ++ ++I AL G E F+ + + F Sbjct: 179 TLSEEFPVP-----PTVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWK 233 Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212 + L E + PE ++T +SG P + V + A+G + AE Sbjct: 234 IINPMGLLVEELKKRNISAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAE 293 Query: 213 QVAAAEVLKRE 223 + AA L++ Sbjct: 294 EEAARVALRKL 304 >gi|321470822|gb|EFX81797.1| hypothetical protein DAPPUDRAFT_211106 [Daphnia pulex] Length = 605 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + ++ G H P +T V I P +G SK+ A+ AA L++ Sbjct: 130 RLKPGIKIEIVKEEGSPHLPIYTARVVIGDQ-PFEGTGSSKKQAKNEAAQAALQK 183 >gi|296087161|emb|CBI33535.3| unnamed protein product [Vitis vinifera] Length = 333 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAEQVA 215 K LQE+ P Y+ G H P+F V + G S ++AAEQ Sbjct: 23 HKNRLQEYTQRSAIPLPIYQTVNE-GFQHAPKFRSTVLVDGATYTSPNTFSHRKAAEQDV 81 Query: 216 AAEVLK 221 A L+ Sbjct: 82 ARLALE 87 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K+ L E+A P Y G P F + +G+ +K+ AEQ+AA Sbjct: 109 KSILNEFAVKMNLEKPTYTTVQPEGL--LPVFVSSLVFNGVTYTGDAGRNKKEAEQLAAR 166 Query: 218 EVL 220 V+ Sbjct: 167 TVI 169 >gi|225453150|ref|XP_002272597.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 671 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAEQVA 215 K LQE+ P Y+ G H P+F V + G S ++AAEQ Sbjct: 361 HKNRLQEYTQRSAIPLPIYQTVNE-GFQHAPKFRSTVLVDGATYTSPNTFSHRKAAEQDV 419 Query: 216 AAEVLK 221 A L+ Sbjct: 420 ARLALE 425 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K+ L E+A P Y G P F + +G+ +K+ AEQ+AA Sbjct: 447 KSILNEFAVKMNLEKPTYTTVQPEGL--LPVFVSSLVFNGVTYTGDAGRNKKEAEQLAAR 504 Query: 218 EVL 220 V+ Sbjct: 505 TVI 507 >gi|195347707|ref|XP_002040393.1| GM19166 [Drosophila sechellia] gi|194121821|gb|EDW43864.1| GM19166 [Drosophila sechellia] Length = 602 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YK+ ++GP H P FT+ VE+ G SK+ A AAA L+ Sbjct: 67 YKLESQTGPVHAPLFTISVEVDDQKY-YGQGRSKKIARIEAAATALR 112 >gi|241718568|ref|XP_002403965.1| adenosine deaminase acting on RNA (adar)-1, putative [Ixodes scapularis] gi|215505279|gb|EEC14773.1| adenosine deaminase acting on RNA (adar)-1, putative [Ixodes scapularis] Length = 503 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 ++ + E+ + V + + GP H+PRF V + A+ D +K+ Sbjct: 10 ASLTKNPVSAFHEFGQMQH-VEAKIDIVATDGPPHNPRFKAVAFLDKKPVAEAWDKTKKE 68 Query: 211 AEQVAAAEVLKRE 223 A+ AA ++ Sbjct: 69 AKHQAAELAFRKL 81 >gi|254572081|ref|XP_002493150.1| Mitochondrial ribosomal protein of the large subunit [Pichia pastoris GS115] gi|238032948|emb|CAY70971.1| Mitochondrial ribosomal protein of the large subunit [Pichia pastoris GS115] gi|328352834|emb|CCA39232.1| 54S ribosomal protein L3, mitochondrial [Pichia pastoris CBS 7435] Length = 355 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 68/238 (28%), Gaps = 38/238 (15%) Query: 23 LEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 L + LT S ++ L G +L + L + L+ +S + Sbjct: 87 LARGLTCRSNTNKENGLADNFGLSLFGKNLLTYYATEYLIVKYPRLPLSILNAAVDSYIG 146 Query: 81 AETCSQVAREL---------DLASFIRV-------------SSDLRKDVC---------- 108 + + + DL ++ SS K+ Sbjct: 147 KYALLDLGKNIWGIEEDTKSDLTKYLNNEPKEYAFGKLRYDSSVEEKEDGIVAISKESAL 206 Query: 109 -SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWA 165 S A V S+IA +Y G F++ + R L +L Sbjct: 207 KMDKASAYASAVRSIIAGIYAHDGESETKKFINSHILSRKLDIASMFEFTQPIRQLSRLL 266 Query: 166 HAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + P ++ +G +P F V + +G S A+ A LK+ Sbjct: 267 QRENLPAPTSRLIAENGRLSSNPIFIVGIFSGNDKLGEGQGPSILKAKTDACINSLKQ 324 >gi|159473675|ref|XP_001694959.1| dicer-like protein [Chlamydomonas reinhardtii] gi|158276338|gb|EDP02111.1| dicer-like protein [Chlamydomonas reinhardtii] Length = 1927 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 20/103 (19%) Query: 15 YAFANRSLLEKALTHSSIS------------------HSYQESYERLEFLGDRILGLLIS 56 Y F + +L ALTH S Y+ LEFLGD ++GLL S Sbjct: 1650 YQFHDPALALCALTHVSWPVPPVSSSGKGLDAGAGSGGGSGGHYQLLEFLGDAVVGLLAS 1709 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 L+ + ++S+ LV +T + L++ +RV Sbjct: 1710 --LWAYSLGGSPRDMSMTREMLVRNDTLAACCLGSRLSTALRV 1750 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 18/103 (17%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAK---EGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLE LGD +L L + ++ EG +S + + LV+ E A E L + Sbjct: 1402 ERLETLGDAVLKYLATLYVYGTERDVPVSHEGVMSYKRDQLVANEALYGRALEAGLQHHM 1461 Query: 98 RVSS--DLRKDVCSF-------------MTSIQADVVESLIAA 125 R R AD VE+L+ Sbjct: 1462 RALPYDMERVLRGRHWNTGEEAARAQEVRGKRLADCVEALVGC 1504 >gi|169665428|gb|ACA63429.1| dicer-like 1 protein [Chlamydomonas reinhardtii] Length = 2243 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 20/103 (19%) Query: 15 YAFANRSLLEKALTHSSIS------------------HSYQESYERLEFLGDRILGLLIS 56 Y F + +L ALTH S Y+ LEFLGD ++GLL S Sbjct: 1842 YQFHDPALALCALTHVSWPVPPVSSSGKGLDAGAGSGGGSGGHYQLLEFLGDAVVGLLAS 1901 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 L+ + ++S+ LV +T + L++ +RV Sbjct: 1902 --LWAYSLGGSPRDMSMTREMLVRNDTLAACCLGSRLSTALRV 1942 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 18/103 (17%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAK---EGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLE LGD +L L + ++ EG +S + + LV+ E A E L + Sbjct: 1594 ERLETLGDAVLKYLATLYVYGTERDVPVSHEGVMSYKRDQLVANEALYGRALEAGLQHHM 1653 Query: 98 RVSS--DLRKDVCSF-------------MTSIQADVVESLIAA 125 R R AD VE+L+ Sbjct: 1654 RALPYDMERVLRGRHWNTGEEAARAQEVRGKRLADCVEALVGC 1696 >gi|198470865|ref|XP_001355419.2| GA11711 [Drosophila pseudoobscura pseudoobscura] gi|198145657|gb|EAL32477.2| GA11711 [Drosophila pseudoobscura pseudoobscura] Length = 633 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 72 YKLESQTGPVHAPLFTISVEVDGQKY-MGQGRSKKVARIEAAATALR 117 >gi|195403581|ref|XP_002060356.1| GJ18414 [Drosophila virilis] gi|194147402|gb|EDW63114.1| GJ18414 [Drosophila virilis] Length = 633 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 72 YKLESQTGPVHAPLFTISVEVDGQKY-MGQGRSKKVARIEAAATALR 117 >gi|195162123|ref|XP_002021905.1| GL14352 [Drosophila persimilis] gi|194103803|gb|EDW25846.1| GL14352 [Drosophila persimilis] Length = 619 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 72 YKLESQTGPVHAPLFTISVEVDGQKY-MGQGRSKKVARIEAAATALR 117 >gi|195133919|ref|XP_002011386.1| GI16028 [Drosophila mojavensis] gi|193907361|gb|EDW06228.1| GI16028 [Drosophila mojavensis] Length = 633 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 72 YKLESQTGPVHAPLFTISVEVDGQKY-MGQGRSKKVARIEAAATALR 117 >gi|189182361|gb|ACD81882.1| dicer-like nuclease 1 [Chlamydomonas reinhardtii] Length = 2236 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 20/103 (19%) Query: 15 YAFANRSLLEKALTHSSIS------------------HSYQESYERLEFLGDRILGLLIS 56 Y F + +L ALTH S Y+ LEFLGD ++GLL S Sbjct: 1842 YQFHDPALALCALTHVSWPVPPVSSSGKGLDAGAGSGGGSGGHYQLLEFLGDAVVGLLAS 1901 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 L+ + ++S+ LV +T + L++ +RV Sbjct: 1902 --LWAYSLGGSPRDMSMTREMLVRNDTLAACCLGSRLSTALRV 1942 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 18/103 (17%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAK---EGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLE LGD +L L + ++ EG +S + + LV+ E A E L + Sbjct: 1594 ERLETLGDAVLKYLATLYVYGTERDVPVSHEGVMSYKRDQLVANEALYGRALEAGLQHHM 1653 Query: 98 RVSS--DLRKDVCSF-------------MTSIQADVVESLIAA 125 R R AD VE+L+ Sbjct: 1654 RALPYDMERVLRGRHWNTGEEAARAQEVRGKRLADCVEALVGC 1696 >gi|12597661|ref|NP_075066.1| 39S ribosomal protein L44, mitochondrial precursor [Homo sapiens] gi|51316917|sp|Q9H9J2|RM44_HUMAN RecName: Full=39S ribosomal protein L44, mitochondrial; Short=L44mt; Short=MRP-L44; Flags: Precursor gi|10434358|dbj|BAB14234.1| unnamed protein product [Homo sapiens] gi|15082305|gb|AAH12058.1| Mitochondrial ribosomal protein L44 [Homo sapiens] gi|48146703|emb|CAG33574.1| MRPL44 [Homo sapiens] gi|62822376|gb|AAY14925.1| unknown [Homo sapiens] gi|119591225|gb|EAW70819.1| mitochondrial ribosomal protein L44, isoform CRA_a [Homo sapiens] gi|119591226|gb|EAW70820.1| mitochondrial ribosomal protein L44, isoform CRA_a [Homo sapiens] gi|325463573|gb|ADZ15557.1| mitochondrial ribosomal protein L44 [synthetic construct] Length = 332 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 11/191 (5%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 +S + L G ++ L + + + + L E VAR L + + Sbjct: 120 KSNQELSEQGTSFSQTCLTQFLEDEYPDMPTEGIKNLVDFLTGEEVVCHVARNLAVEQ-L 178 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155 +S + ++ ++I AL G E F+ + + F Sbjct: 179 TLSEEFPVP-----PAVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWK 233 Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212 + L E + PE ++T +SG P + V + A+G + AE Sbjct: 234 IINPMGLLVEELKKRNVSAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAE 293 Query: 213 QVAAAEVLKRE 223 + AA L++ Sbjct: 294 EEAARVALRKL 304 >gi|73961632|ref|XP_547564.2| PREDICTED: similar to adenosine deaminase, RNA-specific isoform b [Canis familiaris] Length = 1119 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ T L E H K G + E+++ R GP HDP+F V + SK+ A+Q+ Sbjct: 532 KNPVTTLLECVH-KLGSSCEFRLLSREGPAHDPKFQYCVAMGAHTFPTVSAPSKKVAKQM 590 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 591 AAEEAMKAL 599 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T E+ + +SGP H+PRF V I G SK+ A+Q Sbjct: 421 KNPISGLLEYAQ-FASQTCEFNLLEQSGPPHEPRFKFQVIIGGREFPPAEAGSKKVAKQD 479 Query: 215 AAAEVL 220 AA + + Sbjct: 480 AALKAM 485 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 650 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 708 Query: 221 K 221 + Sbjct: 709 R 709 >gi|145551869|ref|XP_001461611.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124429446|emb|CAK94238.1| unnamed protein product [Paramecium tetraurelia] Length = 313 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 35/242 (14%) Query: 16 AFANRSLLEKAL---THSS-ISHSYQE-----SYERLEFLGDRILGLLISTL-LFNHFDS 65 F N+ LL +AL H + + + E G +++ L F + Sbjct: 7 EFRNQKLLVQALSNKIHETEYFQKTGKLYQYGNNEEFSIDGQQLIEFYFYDYMLLQGFPN 66 Query: 66 -----AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 K ++ L++ + S++A L+L + + V + + + +D ++ Sbjct: 67 QQSQFKKPSDIIQLRQRLINDKYLSEIATLLNLQNLVSVGN---QKSLKNNPKVLSDCLK 123 Query: 121 SLIAALYLD--GGIEVAGTFVDKYWKQ-----RALKSGKFRRDAKTELQEWA-HAKFGVT 172 S+I A Y D +EV + Q + + K++ + K+ E+ K + Sbjct: 124 SVIGAHYYDKQNDLEVLRDLIHPIIAQLLNKGQEIGLKKWKYNPKSSFLEFLNQYKGQLG 183 Query: 173 PEYKVTFRSGPD------HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 K+T D ++ + + +E++ Q + +KR EQ E L++ Sbjct: 184 INPKLTIEWKKDDTILNQNNSYYQITLELNSNFQIQKIGINKRETEQNVYQEALVYLRKL 243 Query: 224 GI 225 I Sbjct: 244 NI 245 >gi|189236536|ref|XP_975506.2| PREDICTED: similar to neuron-specific staufen [Tribolium castaneum] Length = 425 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 2/73 (2%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K + T + E A E+ V SG H F ++ +G SK Sbjct: 224 KLKDDLKSPITRVHEAAQLNNLAL-EFNVISESGKPHQRNFVTECKLGDYV-TEGEGRSK 281 Query: 209 RAAEQVAAAEVLK 221 + +++VAA ++L+ Sbjct: 282 KESKRVAAEKMLQ 294 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 2/48 (4%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 E A + Y + GP H F V + + +G S + Sbjct: 24 ELAQFN-EIECSYTLISEEGPPHAKIFKVSLHLGDELY-EGSGSSLKK 69 >gi|315046170|ref|XP_003172460.1| hypothetical protein MGYG_05052 [Arthroderma gypseum CBS 118893] gi|311342846|gb|EFR02049.1| hypothetical protein MGYG_05052 [Arthroderma gypseum CBS 118893] Length = 636 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 7/142 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S +E +GY F ++ LL KALT + + + RL LG ++ L+ + + Sbjct: 3 SKTSIRPVEDIVGYTFKSKPLLLKALTAAGSELNDYDGNRRLAQLGTALVEFLLVYIGYR 62 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + ++ + VA+ + S+I SS + ++ A + + Sbjct: 63 Q--NVPRDHTTRFKIRFGGSKHRAAVAKRTGIDSYISYSS----RSGAKAPTVLAKSLNA 116 Query: 122 LIAALYLDG-GIEVAGTFVDKY 142 +IAA ++D I VA + + Sbjct: 117 IIAATFVDSRDIAVAFRAMLRL 138 >gi|201023367|ref|NP_001128425.1| R2D2 protein [Tribolium castaneum] gi|270009455|gb|EFA05903.1| hypothetical protein TcasGA2_TC008716 [Tribolium castaneum] Length = 320 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 154 RRDAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 R++ KT LQE+ + PEY + H+ F V ++ G SK+ Sbjct: 3 RQNTKTPAMVLQEFTMKRGFSPPEYILVMSKTGTHENEFHYKVNVAN-VCGLGFGRSKQV 61 Query: 211 AEQVAAAEVLK 221 A+ AA++ L+ Sbjct: 62 AKHNAASKALE 72 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 PE+K GP H FT I+ + Q +K+ A+Q+AA E+L++ Sbjct: 121 KLPYPEFKEISDVGPPHCREFTYECCIASIT-TQATANTKKQAKQLAAREMLEK 173 >gi|10436325|dbj|BAB14802.1| unnamed protein product [Homo sapiens] Length = 332 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 11/191 (5%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 +S + L G ++ L + + + + L E VAR L + + Sbjct: 120 KSNQELSEQGTSFSQTCLTQFLEDEYPDMPTEGIKNLVDFLTGEEVVCHVARNLAVEQ-L 178 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155 +S + ++ ++I AL G E F+ + + F Sbjct: 179 TLSEEFPVP-----PAVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMRK 233 Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212 + L E + PE ++T +SG P + V + A+G + AE Sbjct: 234 IINPMGLLVEELKKRNVSAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAE 293 Query: 213 QVAAAEVLKRE 223 + AA L++ Sbjct: 294 EEAARVALRKL 304 >gi|242059029|ref|XP_002458660.1| hypothetical protein SORBIDRAFT_03g037610 [Sorghum bicolor] gi|241930635|gb|EES03780.1| hypothetical protein SORBIDRAFT_03g037610 [Sorghum bicolor] Length = 529 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 6/128 (4%) Query: 22 LLEKALTH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 LL A H + + + + RL FLG +L L + G + R Sbjct: 160 LLYLAFQHLDPSSERTRTRHVRNGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERV 219 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 +L+ + + + L + + DL K + V +L A+YL G+ Sbjct: 220 FALIGKKVLPRWLKAASLHNLVFPYDDLDKMIRKDREPPSKAVFWALFGAIYLCFGMPEV 279 Query: 136 GTFVDKYW 143 + + + Sbjct: 280 YRVLFEAF 287 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 10/145 (6%) Query: 18 ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + YERLE++G +I L+++ L A L+ Sbjct: 386 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDLVMAERLLMKHLDAPGRWLA 445 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFMTSIQADVVESLIAALYL 128 + + + C + R+ L +I + S V ++L Y Sbjct: 446 EKHRRTLMNKYCGRYLRDKHLQHYIIYGETVQDRFEHNRRLRNPST-TSVQQALHGLAYC 504 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF 153 G + + + ++ Sbjct: 505 VYGKPDVRRLMFEVFDFEQVQPKAV 529 >gi|195027427|ref|XP_001986584.1| GH20445 [Drosophila grimshawi] gi|193902584|gb|EDW01451.1| GH20445 [Drosophila grimshawi] Length = 1053 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 3/88 (3%) Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVV 193 ++ K++ + T+L + + P +++ ++G + R F + V Sbjct: 719 RKRLNATVKEKPAVELDEDENPITKLIQLQQTRKEKEPIFELIAKNGNESSRRREFVIEV 778 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLK 221 SG A+G SK+ A++ AA +L+ Sbjct: 779 CASGN-IARGTGNSKKLAKRNAAQALLE 805 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++T GP H FTV +++ + A+ +AA++ ++ Sbjct: 343 QYRLTGERGPAHCKTFTVTLKLGEEEY-SADGFKIKKAQHLAASKAIE 389 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +T +KV GP H F + G +G K+ +++ +A ++L Sbjct: 613 RRNMTVHFKVLREEGPAHMKNFITACIV-GAIVTEGEGNGKKLSKKRSAEKML 664 >gi|158285608|ref|XP_308394.4| AGAP007478-PA [Anopheles gambiae str. PEST] gi|157020074|gb|EAA04622.5| AGAP007478-PA [Anopheles gambiae str. PEST] Length = 1149 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 3/93 (3%) Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTV 191 A K++++ + + + L + A+ P Y + P +FT+ Sbjct: 856 TAKKKARNLIKEKSVADVAEKENPISRLMQIQQARKEKQPVYTLQENDRPAVGRRRQFTI 915 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V G A G+ +K+AA+ AA +L G Sbjct: 916 EVSAGGRQ-ATGVGMTKKAAKWNAAEALLIELG 947 Score = 58.2 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +Y++T SGP H FTV++++ S + A+ AA + + Sbjct: 440 QYRLTGESGPAHKKHFTVMLKLGDEEY-TAEGASIKKAQHKAAGDAI 485 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 2/76 (2%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 L + + + E A + + ++V GP H F ++ G +G Sbjct: 739 LDPNAELKSPISLVHEIAVQRSL-SVVFEVISEKGPPHMTVFVTQCKV-GTIVTEGEGTG 796 Query: 208 KRAAEQVAAAEVLKRE 223 K+ +++ AA ++L+ Sbjct: 797 KKLSKKRAAEKMLEEL 812 >gi|261201536|ref|XP_002627982.1| 60S ribosomal protein L3 [Ajellomyces dermatitidis SLH14081] gi|239590079|gb|EEQ72660.1| 60S ribosomal protein L3 [Ajellomyces dermatitidis SLH14081] Length = 400 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 85/284 (29%), Gaps = 67/284 (23%) Query: 1 MSALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 +++ + S + R+ L L + L S + Q + + L LG +L S Sbjct: 117 LNSAKLSAIHARLSL-PQRLPLQTLARTLVDESADPTPQFNNKSLSILGGDLLTYYTSEY 175 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA--------------SFIRV----- 99 L + + L S + A+ + + RE L F R+ Sbjct: 176 LISTYPRLPVKVLWAAMYSYIGAKPLAAMTREWGLEFAAEPGPEVDPGLLQFKRLPPDTV 235 Query: 100 ------SSDLRKDVCSFMTS-----IQADVV------------------------ESLIA 124 + LR+D S I D +++ Sbjct: 236 VETNSNGTFLRRDGGLSKRSTSARIIYGDAFGESALPYPVHREGVTPNRACANFVRAIVG 295 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL G A F +++ R L R +L + + P K+ +G Sbjct: 296 AVYLHAGRPAAKQFYKEHFTSRHLDMASLFSFRQPTRDLSKLCRREGFEDPVAKILSETG 355 Query: 183 P-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + P F V + +G S + L+ G+ Sbjct: 356 RLSNRPVFNVGIFSGPDKLGEGAGGSLK-------RSALQSRGV 392 >gi|301766360|ref|XP_002918599.1| PREDICTED: 39S ribosomal protein L44, mitochondrial-like [Ailuropoda melanoleuca] gi|281343634|gb|EFB19218.1| hypothetical protein PANDA_007087 [Ailuropoda melanoleuca] Length = 330 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 11/191 (5%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 + + L G ++ L + + + + L E VAR L + + Sbjct: 118 KDNQELSEQGTSFSKTCLTQFLEDAYPDLPREGIKSLVDFLTGEEVVCHVARNLAVEQ-L 176 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155 +S++ + + ++I AL G E F+ + + F Sbjct: 177 TLSAEFPV-----LPPVLQRTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEIWK 231 Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212 + L E + PE ++T +SG P F V + A+G + AE Sbjct: 232 IINPMGLLVEELKKRNISAPESRLTRQSGSTTALPVFFVGLYCDKKLIAEGPGETVLVAE 291 Query: 213 QVAAAEVLKRE 223 + AA L++ Sbjct: 292 EEAARVALRKL 302 >gi|254693019|gb|ACT79359.1| RE17094p [Drosophila melanogaster] Length = 392 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 71 YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116 >gi|240268596|gb|ACS52172.1| ADARe2 [Drosophila melanogaster] gi|260166757|gb|ACX32990.1| LD32961p [Drosophila melanogaster] Length = 392 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 71 YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116 >gi|240268594|gb|ACS52171.1| ADARe1 [Drosophila melanogaster] Length = 355 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 71 YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116 >gi|195469794|ref|XP_002099821.1| GE16707 [Drosophila yakuba] gi|194187345|gb|EDX00929.1| GE16707 [Drosophila yakuba] Length = 632 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 71 YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116 >gi|194912620|ref|XP_001982542.1| GG12877 [Drosophila erecta] gi|190648218|gb|EDV45511.1| GG12877 [Drosophila erecta] Length = 632 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 71 YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116 >gi|156357520|ref|XP_001624265.1| predicted protein [Nematostella vectensis] gi|156211031|gb|EDO32165.1| predicted protein [Nematostella vectensis] Length = 118 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKR 209 K + + LQE K P++++ F GP H +F V ++G Q + +K+ Sbjct: 36 EKPGKHPISMLQEICARKKWQLPDFQLIFDHGPPHSKQFLFKVAVNGYEYQPQVVSSNKK 95 Query: 210 AAEQVAAAEVLKREG 224 A+ A LK G Sbjct: 96 QAKAQCALYALKAIG 110 >gi|4164311|emb|CAA22774.1| EG:BACN35H14.1 [Drosophila melanogaster] Length = 653 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 71 YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116 >gi|7546827|gb|AAF63703.1| double-stranded RNA-specific adenosine deaminase a [Drosophila melanogaster] Length = 632 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 71 YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116 >gi|7546826|gb|AAF63702.1| alternative double-stranded RNA-specific adenosine deaminase b [Drosophila melanogaster] Length = 669 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 71 YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116 >gi|85724778|ref|NP_001033821.1| adenosine deaminase acting on RNA, isoform C [Drosophila melanogaster] gi|84798392|gb|ABC67164.1| adenosine deaminase acting on RNA, isoform C [Drosophila melanogaster] gi|294712595|gb|ADF29633.1| SD06892p [Drosophila melanogaster] Length = 186 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 71 YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116 >gi|45551201|ref|NP_726761.2| adenosine deaminase acting on RNA, isoform B [Drosophila melanogaster] gi|45446775|gb|AAN09057.2| adenosine deaminase acting on RNA, isoform B [Drosophila melanogaster] Length = 628 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 67 YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 112 >gi|24639162|ref|NP_569940.2| adenosine deaminase acting on RNA, isoform A [Drosophila melanogaster] gi|13448047|gb|AAK26850.1| pre-mRNA adenosine deaminase [Drosophila melanogaster] gi|22831515|gb|AAF45665.2| adenosine deaminase acting on RNA, isoform A [Drosophila melanogaster] Length = 632 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 71 YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116 >gi|61218669|sp|Q9NII1|ADAR_DROME RecName: Full=Double-stranded RNA-specific editase Adar; AltName: Full=Adenosine deaminase that act on RNA; AltName: Full=Pre-mRNA adenosine deaminase; AltName: Full=RNA-editing deaminase 1; AltName: Full=RNA-editing enzyme 1; AltName: Full=dADAR; AltName: Full=dsRNA adenosine deaminase Length = 676 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 78 YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 123 >gi|320333355|ref|YP_004170066.1| double-stranded RNA-binding domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319754644|gb|ADV66401.1| double-stranded RNA binding domain protein [Deinococcus maricopensis DSM 21211] Length = 148 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 AK EL P + V + GP HDP F + + A G +KR AE+VA+ Sbjct: 3 AKGELINRLRHLGLDAPHFDV-QQDGPAHDPHFRADIRVGSQILASGEGRTKRDAERVAS 61 Query: 217 AEVL 220 L Sbjct: 62 EAAL 65 >gi|321253836|ref|XP_003192868.1| hypothetical protein CGB_C5540W [Cryptococcus gattii WM276] gi|317459337|gb|ADV21081.1| hypothetical protein CNC03670 [Cryptococcus gattii WM276] Length = 972 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 61/196 (31%), Gaps = 38/196 (19%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + +GY F + E A + S + ++ ER + +G+ +L L + LL + + Sbjct: 699 EVLGYKFKDNKKFEDAFS-LSPAQQTKKIRERYKMMGNALLDLYVIELLMDTYPDEGPAS 757 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIR----VSSDLRKDVCSFMTS------------- 113 LSV S + +A EL + I S K FM Sbjct: 758 LSVMKLSRTTEGLRCALAVELGMPDLIIDGDDHSRSELKRATHFMQKAKAQADENLNESE 817 Query: 114 --------------IQADVVESLIAALYLDGGI--EVAGTF----VDKYWKQRALKSGKF 153 + ++E L A++ D E V + + S F Sbjct: 818 QGGVHYWEEVVISRVNGSILEILFGAIFDDCNFSLEPTQKIFSERVAPFLAKYCRGSNGF 877 Query: 154 RRDAKTELQEWAHAKF 169 K L W K Sbjct: 878 DPHPKAMLTRWMQKKG 893 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 66/182 (36%), Gaps = 42/182 (23%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MSA ++++ + L +A+T + + + +YERLE LGD +L + + + Sbjct: 489 MSAKEFNSIL--------DPELALQAITAAEGLNVPRWTYERLEILGDTLLKFITTLHFY 540 Query: 61 NHFDSA-KEGELSVR---FNSLVSAETCSQVARELDLASFIRVSSDLRK----------- 105 A E +++ + L+S T + A + L +IR K Sbjct: 541 LLGGGADSEVDMNKVWQDRHMLISNRTLTANAVKQGLVKYIRNKKFKVKEWTPRDWELDL 600 Query: 106 ---------------DVCSFM---TSIQADVVESLIAALYL-DGGIEVAGTFVDKYWKQR 146 D + AD++E++I A Y+ + ++ + Sbjct: 601 PPGQFTPKKAMPTSFDGPESRTLGDKVIADIIEAIIGASYVHNKDLDNVIAILHNLMVPL 660 Query: 147 AL 148 L Sbjct: 661 NL 662 >gi|327506438|gb|AEA92657.1| RNase3 [Sweet potato chlorotic stunt virus] Length = 228 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 78/218 (35%), Gaps = 37/218 (16%) Query: 29 HS--SISHS--YQESYERLEFLGDRILGLLISTLLFNHFD-SAKEGELSVRFNSLVSAET 83 H SI HS +R E LGD + ++ +L + F +A LS+ +S Sbjct: 21 HRLDSIVHSVCTSGDRDRYEILGDWAVASYVTRMLTDLFKHNADAESLSLLRAHNISNVM 80 Query: 84 CSQVARELDL--ASFIRVSSDLRK------DVCSF----MTSIQADVVESLIAALYLDGG 131 ++V E L ++ ++ D + A+ E ++ L + Sbjct: 81 FAKVMVESKLFEDFYLWLTPDQMQLCRKTFAGGRGLYEVNVKFLANYFERIVGWLVVHDC 140 Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT----PEYKVTFRSGPDHDP 187 E F+D + K S ++ A++ L+EWA EY V Sbjct: 141 SESVEKFLDLFLKPHM--SFHIKKPARSILEEWAMKNNKRLDIHTGEYNVNK-------- 190 Query: 188 RFTVVVEISGLAPAQGMDC-SKRAAEQVA---AAEVLK 221 V V + G ++ D SK+ A A A E L Sbjct: 191 --VVYVLVDGQKVSRASDLISKKRAISKAVSIAVEALN 226 >gi|242069681|ref|XP_002450117.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor] gi|241935960|gb|EES09105.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor] Length = 292 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Query: 158 KTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE+A P Y T + SGP F VEI G+ +K+ AE AA Sbjct: 94 KNLLQEYAQKMNYAIPSYICTKQASGP-----FICSVEIGGILYIGAAARTKKGAEIKAA 148 Query: 217 AEVL 220 L Sbjct: 149 RTAL 152 >gi|296205725|ref|XP_002749884.1| PREDICTED: 39S ribosomal protein L44, mitochondrial-like [Callithrix jacchus] Length = 331 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 11/191 (5%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 +S + L G ++ L + F + + L E VAR L + + Sbjct: 120 KSNQELSEQGTSFSKTCLTQFLEDEFPDLPTEGIRSLVDFLTGEEVVCHVARNLAVEQ-L 178 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155 +S + ++ +++ AL G E F+ + + F Sbjct: 179 TLSEEFPVP-----PTVLQQTFFAVVGALLQSSGPERTALFIRDFLITQMTGKELFEMWK 233 Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212 + L E + PE ++T +SG P + V + A+G + AE Sbjct: 234 IINPMGLLVEELKKRNISLPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAE 293 Query: 213 QVAAAEVLKRE 223 + AA L++ Sbjct: 294 EEAARVALRKL 304 >gi|126307762|ref|XP_001373191.1| PREDICTED: similar to adenosine deaminase, RNA-specific [Monodelphis domestica] Length = 1131 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 F ++ + L E G T E+ + + GP HDP+F V++ M SK+AA+ Sbjct: 544 FGKNPISVLMEHVQKN-GSTCEFLLISQEGPAHDPKFKYCVKMGSQTFPTMMANSKKAAK 602 Query: 213 QVAAAEVLKRE 223 Q+AA +K Sbjct: 603 QMAAEVAVKAL 613 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 +++ + L E+A T E+ + +SGP H+PRF ISG SK+ A Q Sbjct: 433 QKNPISGLLEYAQFT-CQTCEFTLLEQSGPSHEPRFKYQAVISGRRFPPAEAGSKKLARQ 491 Query: 214 VAAAEVL 220 AAA+ + Sbjct: 492 DAAAKAM 498 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q A Sbjct: 654 NPISGLFEYARSNGFAA-EFKLVDQSGPPHEPKFIYQAKVGGRWFPAVSAHSKKQGKQEA 712 Query: 216 AAEVLK 221 A L+ Sbjct: 713 ADAALR 718 >gi|22550319|ref|NP_689397.1| putative ribonuclease III [Sweet potato chlorotic stunt virus] gi|22535415|emb|CAD21943.1| putative ribonuclease III [Sweet potato chlorotic stunt virus] gi|158323836|gb|ABW34422.1| RNase3 class I protein [Sweet potato chlorotic stunt virus] Length = 228 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 78/218 (35%), Gaps = 37/218 (16%) Query: 29 HS--SISHS--YQESYERLEFLGDRILGLLISTLLFNHFD-SAKEGELSVRFNSLVSAET 83 H SI HS +R E LGD + ++ +L + F +A LS+ +S Sbjct: 21 HRLDSIVHSICTSGDRDRYEILGDWAVASYVTRMLTDLFKHNADAESLSLLRAHNISNVM 80 Query: 84 CSQVARELDL--ASFIRVSSDLRK------DVCSF----MTSIQADVVESLIAALYLDGG 131 ++V E L ++ ++ D + A+ E ++ L + Sbjct: 81 FAKVMVESKLFEDFYLWLTPDQMQLCRKTFAGGRSLYEVNVKFLANYFERIVGWLVVHDC 140 Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT----PEYKVTFRSGPDHDP 187 E F+D + K S ++ A++ L+EWA EY V Sbjct: 141 SESVEKFLDLFLKPHM--SFHIKKPARSILEEWAMKNNKRLDIHTGEYNVNK-------- 190 Query: 188 RFTVVVEISGLAPAQGMDC-SKRAAEQVA---AAEVLK 221 V V + G ++ D SK+ A A A E L Sbjct: 191 --VVYVLVDGQEVSRASDLISKKRAISKAVSFAVEALN 226 >gi|73953912|ref|XP_868235.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 4 [Canis familiaris] Length = 133 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 20/47 (42%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K GP H +TV V G G S + AE AA + L++ Sbjct: 44 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 90 >gi|84616741|emb|CAJ47419.1| RNA-specific adenosine deaminase [Gallus gallus] Length = 853 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ + L E++ + E+ + +SGP H+PRF I+G SK+ A+Q Sbjct: 140 EKNPVSGLTEYSQFTYQHC-EFTMLEQSGPSHEPRFKFQAVINGRPFPPAEAGSKKLAKQ 198 Query: 214 VAAAEVLK 221 AAA ++ Sbjct: 199 EAAANAMR 206 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L E+ K G E+ + + GP HDPRF+ V++ + SK+ A+Q+ Sbjct: 256 KHPISVLMEYGQ-KSGNMIEFLLLSQDGPPHDPRFSYCVKMGDQIFPAVVGNSKKGAKQM 314 Query: 215 AAAEVLK 221 AA +K Sbjct: 315 AAEVAVK 321 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + + L E+A + E+K+ ++GP HDP+F ++ G SK+ + Sbjct: 371 LNVNPVSGLLEYARSNGFAA-EFKLIDQTGPPHDPKFVYQAKVGGRWFPAVTAHSKKQGK 429 Query: 213 QVAAAEVLK 221 Q AA L+ Sbjct: 430 QEAADAALR 438 >gi|118102165|ref|XP_001232162.1| PREDICTED: similar to RNA-specific adenosine deaminase [Gallus gallus] Length = 853 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ + L E++ + E+ + +SGP H+PRF I+G SK+ A+Q Sbjct: 140 EKNPVSGLTEYSQFTYQHC-EFTMLEQSGPSHEPRFKFQAVINGRPFPPAEAGSKKLAKQ 198 Query: 214 VAAAEVLK 221 AAA ++ Sbjct: 199 EAAANAMR 206 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L E+ K G E+ + + GP HDPRF+ V++ + SK+ A+Q+ Sbjct: 256 KHPISVLMEYGQ-KSGNMIEFLLLSQDGPPHDPRFSYCVKMGDQIFPAVVGNSKKGAKQM 314 Query: 215 AAAEVLK 221 AA +K Sbjct: 315 AAEVAVK 321 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + + L E+A + E+K+ ++GP HDP+F ++ G SK+ + Sbjct: 371 LNVNPVSGLLEYARSNGFAA-EFKLIDQTGPPHDPKFVYQAKVGGRWFPAVTAHSKKQGK 429 Query: 213 QVAAAEVLK 221 Q AA L+ Sbjct: 430 QEAADAALR 438 >gi|45383189|ref|NP_989818.1| interferon-induced, double-stranded RNA-activated protein kinase [Gallus gallus] gi|38194196|dbj|BAD01484.1| double-stranded RNA-activated protein kinase [Gallus gallus] Length = 550 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 D + L +++ +Y R+G H P ++ ISG G S A+Q A Sbjct: 99 DYISLLNKYSQKT-LQLVDYNNINRTGDPHAPMYSCSCVISGHVYGNGKGNSLAVAKQAA 157 Query: 216 AAEVLK 221 A E + Sbjct: 158 AKEAYE 163 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 + +Y GP HDP F VVV+I+G+ G+ Sbjct: 12 YCQKNKYKL-DYVDVDMRGPSHDPEFEVVVKINGVKYGTGVGK 53 >gi|47209094|emb|CAF93170.1| unnamed protein product [Tetraodon nigroviridis] Length = 673 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 7/93 (7%) Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 I+ + K +A+ S + L + +Y++ +SGP H P FT+ Sbjct: 323 IKKMKRNLRKVLDSKAIDSNQ----PMNALMRLNQIR--PGLQYRLLSQSGPVHAPVFTM 376 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V++ G + SK+ A+ A +VL+ G Sbjct: 377 SVDVDGTVY-EASGSSKKTAKLHVAVKVLQAMG 408 Score = 43.9 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y + SG HD RF + VE+ G +G + Sbjct: 465 KNPVMELNEKRRGL--KYDLISESGGSHDKRFVMEVEVDGQK-FRGAGPN 511 >gi|270006021|gb|EFA02469.1| hypothetical protein TcasGA2_TC008157 [Tribolium castaneum] Length = 480 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 2/73 (2%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K + T + E A E+ V SG H F ++ +G SK Sbjct: 224 KLKDDLKSPITRVHEAAQLNNLAL-EFNVISESGKPHQRNFVTECKLGDYV-TEGEGRSK 281 Query: 209 RAAEQVAAAEVLK 221 + +++VAA ++L+ Sbjct: 282 KESKRVAAEKMLQ 294 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 2/48 (4%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 E A + Y + GP H F V + + +G S + Sbjct: 24 ELAQFN-EIECSYTLISEEGPPHAKIFKVSLHLGDELY-EGSGSSLKK 69 >gi|115640588|ref|XP_787414.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115965191|ref|XP_001180563.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 878 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%) Query: 158 KTE---LQEWAHAKFGVT-PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 KT L E A+F P+Y++ GP H+ F+V + + S + A+ Sbjct: 105 KTSMCLLNEL--ARFNKLQPKYELVSEKGPPHEKIFSVCLTLGPQKYDS-SGASIKKAQH 161 Query: 214 VAAAEVLKREGI 225 AAA L++ G+ Sbjct: 162 GAAASALEKCGL 173 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 3/76 (3%) Query: 150 SGKFRRDAKT--ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SG R+ K+ L A + +KV G H F + + G + S Sbjct: 439 SGGEERNVKSDISLIYEAANLHNLNVVFKVLDERGQPHLKIFKLQCTV-GEFNTESEGPS 497 Query: 208 KRAAEQVAAAEVLKRE 223 K+ A++ AA +L + Sbjct: 498 KKDAKRKAAELMLPKL 513 >gi|195121068|ref|XP_002005043.1| GI19273 [Drosophila mojavensis] gi|193910111|gb|EDW08978.1| GI19273 [Drosophila mojavensis] Length = 1100 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 3/88 (3%) Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVV 193 + + K+++ + T+L + + P +++ ++G + R F + V Sbjct: 741 RKRLSAHQKEKSTADQDDAENPITKLIQLQQTRKEKEPIFELIAKNGNESCRRREFVMEV 800 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLK 221 SG A+G SK+ A++ +A +L+ Sbjct: 801 SASGRT-ARGTGNSKKQAKRNSAQALLE 827 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++T GP H FTV +++ + A+ +AA++ ++ Sbjct: 371 QYRLTGERGPAHCKTFTVTLKLGEEEY-SADGFKIKKAQHLAASKAIE 417 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +T +KV GP H F + G ++G K+ +++ AA ++L Sbjct: 637 RRNMTVHFKVLREEGPAHMKNFITACIV-GSIVSEGEGNGKKISKKRAAEKML 688 >gi|190346846|gb|EDK39024.2| hypothetical protein PGUG_03122 [Meyerozyma guilliermondii ATCC 6260] Length = 338 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 75/248 (30%), Gaps = 56/248 (22%) Query: 23 LEKAL---THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 L +AL H +++++ L LG +L +S L + G + ++ + Sbjct: 60 LSQALNMRKHGGLANNFG-----LSTLGKTLLSYYVSEYLLVRYPRLPMGVHNAAVDAYM 114 Query: 80 SAETCSQVARELD--------LASFI------------RVS----------------SDL 103 AET ++ R L ++ R S+ Sbjct: 115 GAETLGEMGRSWGIEVDNSDRLEKYLAKEPEFMQYGKLRFGDNRTNFTDREDGVTELSEA 174 Query: 104 RKDVCSFMTSI------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + A V S+I LY G F++ + R + + + + Sbjct: 175 EMARLRNNVNTSDETQAYASAVRSIIGGLYTHCGEGATKQFINDHVLSRKVPLEQMFQFS 234 Query: 158 K--TELQEWAHAKFGVTP-EYKVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 K EL P E ++ +G H + G +G+ S + A+ Sbjct: 235 KPTRELVRLCDKLGFKDPVEIRLIAETGRLSAHA-IYVAGAFTGGEKLGEGIGSSIQEAK 293 Query: 213 QVAAAEVL 220 A L Sbjct: 294 TRAVVNAL 301 >gi|146418856|ref|XP_001485393.1| hypothetical protein PGUG_03122 [Meyerozyma guilliermondii ATCC 6260] Length = 338 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 75/248 (30%), Gaps = 56/248 (22%) Query: 23 LEKAL---THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 L +AL H +++++ L LG +L +S L + G + ++ + Sbjct: 60 LSQALNMRKHGGLANNFG-----LSTLGKTLLSYYVSEYLLVRYPRLPMGVHNAAVDAYM 114 Query: 80 SAETCSQVARELD--------LASFI------------RVS----------------SDL 103 AET ++ R L ++ R S+ Sbjct: 115 GAETLGEMGRSWGIEVDNSDRLEKYLAKEPEFMQYGKLRFGDNRTNFTDREDGVTELSEA 174 Query: 104 RKDVCSFMTSI------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + A V S+I LY G F++ + R + + + + Sbjct: 175 EMARLRNNVNTSDETQAYASAVRSIIGGLYTHCGEGATKQFINDHVLSRKVPLEQMFQFS 234 Query: 158 K--TELQEWAHAKFGVTP-EYKVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 K EL P E ++ +G H + G +G+ S + A+ Sbjct: 235 KPTRELVRLCDKLGFKDPVEIRLIAETGRLSAHA-IYVAGAFTGGEKLGEGIGSSIQEAK 293 Query: 213 QVAAAEVL 220 A L Sbjct: 294 TRAVVNAL 301 >gi|156537077|ref|XP_001602214.1| PREDICTED: similar to tRNA-dihydrouridine synthase [Nasonia vitripennis] Length = 505 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 46/160 (28%), Gaps = 26/160 (16%) Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG------ 131 + +T Q+ L + R +D E + L L G Sbjct: 346 FLDTQTLEQICEVWGLDEYCRTKQKEHRDRGF------GGRFEVVPERLSLIDGNGGAGK 399 Query: 132 --IEVAGTFVD---KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 ++ + + + K+ L +W P Y D Sbjct: 400 RKLDEEEDVLLMRCAFLRNNYADDTSL---PKSRLAKWTRDNRKKLPIYVTHHE-----D 451 Query: 187 PRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGI 225 F VV++ G + SK+ AEQ AA L G+ Sbjct: 452 KLFRSVVQVDGRKYGSSFWEKSKKWAEQGAALACLCALGV 491 >gi|118405094|ref|NP_001072537.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Xenopus (Silurana) tropicalis] gi|112418622|gb|AAI22034.1| double-stranded RNA activated protein kinase 1 [Xenopus (Silurana) tropicalis] gi|168984501|emb|CAO98764.1| double-stranded RNA activated protein kinase 1 [Xenopus (Silurana) tropicalis] Length = 552 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 +AK +L + + +GP HDPRFT V ++ +G D K+ AE +A Sbjct: 5 NAKGQLITFCIKNGLAY-HFNEVEATGPSHDPRFTSQVFVNQEKLGEGQDKKKKGAENIA 63 Query: 216 AAEVL 220 A L Sbjct: 64 AKMAL 68 Score = 44.7 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 2/65 (3%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + +L E + + G H P F V I + +K+ A++ A Sbjct: 118 NYVGKLHELCQKHKLICKFFD--ECYGLPHIPEFWCKVVIGEEEFHKVKGNNKKEAKRKA 175 Query: 216 AAEVL 220 A L Sbjct: 176 AYFAL 180 >gi|21668316|emb|CAC84469.1| putative ribonuclease III [Spodoptera frugiperda ascovirus 1a] Length = 348 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 48/173 (27%) Query: 16 AFANRSLLEK---ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA-----K 67 F + ++K ALT S + +YE E++GD ++ I + ++ Sbjct: 166 TFRDEGNMDKFQAALT--SKEYDNIFNYEYFEYIGDSVINRFIIDYIRENYTDIHNIQQD 223 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRV------SSDLRKDVCSFMT--------- 112 G ++ + V S+ + L FIR L+ F Sbjct: 224 IGVMTKLRSIYVGKWNLSKCCVSIGLNKFIRCQYAGVDGRKLQVYGHRFKRNNASGVQCQ 283 Query: 113 ----------------------SIQADVVESLIAALYLD-GGIEVAGTFVDKY 142 S+ DV+ES + AL+ G V ++ Sbjct: 284 PKVCADSVYTDTTSTHIHRDVISLLEDVMESFVGALWCSLMGSPHCTKIVRQF 336 >gi|254571879|ref|XP_002493049.1| Mitochondrial ribosomal protein of the large subunit [Pichia pastoris GS115] gi|238032847|emb|CAY70870.1| Mitochondrial ribosomal protein of the large subunit [Pichia pastoris GS115] Length = 208 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 13/147 (8%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL--- 71 Y+ + LL + LTH S +H + E+L +G ++L L S + + S L Sbjct: 59 YSIPDNELLLQILTHKSFAHGLKPYNEKLSVIGFQLLKLQSSVHVISK-PSDSPYALNGK 117 Query: 72 ------SVRFNSLVSAETCSQVARELDLASFI---RVSSDLRKDVCSFMTSIQADVVESL 122 S+ S+ + ++ ++ A+E + + L S ++ V +L Sbjct: 118 NFDCLGSLLTKSIGNHKSLARFAKEKQFDQLVFWKKRDPTLEDPATSGEDTVLGKTVLAL 177 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK 149 I A+ L G +VA F++ ++ Sbjct: 178 IGAINLTHGKKVATEFIETELMPLLVE 204 >gi|158323842|gb|ABW34426.1| RNase3 class I protein [Sweet potato chlorotic stunt virus] Length = 228 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 78/218 (35%), Gaps = 37/218 (16%) Query: 29 HS--SISHS--YQESYERLEFLGDRILGLLISTLLFNHFD-SAKEGELSVRFNSLVSAET 83 H SI HS +R E LGD + ++ +L + F +A LS+ +S Sbjct: 21 HRLDSIVHSICTSGDRDRYEILGDWAVASYVTRMLTDLFKHNADAESLSLLRAHNISNVM 80 Query: 84 CSQVARELDL--ASFIRVSSDLRK------DVCSF----MTSIQADVVESLIAALYLDGG 131 ++V E L ++ ++ D + A+ E ++ L + Sbjct: 81 FAKVMVESKLFEDFYLWLTPDQMQLCRKTFAGGRSLYEVNVKFLANYFERIVGWLVVHDC 140 Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT----PEYKVTFRSGPDHDP 187 E F+D + K S ++ A++ L+EWA EY V Sbjct: 141 SESVEKFLDLFLKPHM--SFHIKKPARSILEEWAMKNNKRLDIHTGEYNVNK-------- 190 Query: 188 RFTVVVEISGLAPAQGMDC-SKRAAEQVA---AAEVLK 221 V V + G ++ D SK+ A A A + L Sbjct: 191 --VVYVLVDGQEVSRASDLISKKRAISKAVSFAVKALN 226 >gi|149048041|gb|EDM00617.1| adenosine deaminase, RNA-specific, isoform CRA_b [Rattus norvegicus] Length = 1175 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T ++ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 452 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 510 Query: 215 AAAEVL 220 AA + + Sbjct: 511 AAVKAM 516 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+ Sbjct: 563 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPSVSAPSKKVAKQM 621 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 622 AAEEAMKAL 630 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 677 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 735 Query: 221 K 221 + Sbjct: 736 R 736 >gi|226371679|ref|NP_062629.3| double-stranded RNA-specific adenosine deaminase isoform 1 [Mus musculus] gi|148683238|gb|EDL15185.1| adenosine deaminase, RNA-specific, isoform CRA_a [Mus musculus] Length = 1152 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T ++ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 455 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 513 Query: 215 AAAEVL 220 AA + + Sbjct: 514 AAVKAM 519 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+ Sbjct: 566 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 624 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 625 AAEEAMKAL 633 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 680 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 738 Query: 221 K 221 + Sbjct: 739 R 739 >gi|226371677|ref|NP_001139768.1| double-stranded RNA-specific adenosine deaminase isoform 3 [Mus musculus] gi|38372251|sp|Q99MU3|DSRAD_MOUSE RecName: Full=Double-stranded RNA-specific adenosine deaminase; Short=DRADA; AltName: Full=RNA adenosine deaminase 1 gi|148683239|gb|EDL15186.1| adenosine deaminase, RNA-specific, isoform CRA_b [Mus musculus] Length = 1178 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T ++ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 455 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 513 Query: 215 AAAEVL 220 AA + + Sbjct: 514 AAVKAM 519 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+ Sbjct: 566 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 624 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 625 AAEEAMKAL 633 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 680 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 738 Query: 221 K 221 + Sbjct: 739 R 739 >gi|13272339|gb|AAK17103.1|AF291050_1 RNA adenosine deaminase 1 [Mus musculus] Length = 1152 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T ++ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 455 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 513 Query: 215 AAAEVL 220 AA + + Sbjct: 514 AAVKAM 519 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+ Sbjct: 566 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 624 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 625 AAEEAMKAL 633 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ Q AA L Sbjct: 680 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGXQDAADAAL 738 Query: 221 K 221 + Sbjct: 739 R 739 >gi|13236214|gb|AAK16102.1|AF291876_1 RNA adenosine deaminase 1 [Mus musculus] Length = 1178 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T ++ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 455 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 513 Query: 215 AAAEVL 220 AA + + Sbjct: 514 AAVKAM 519 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+ Sbjct: 566 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 624 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 625 AAEEAMKAL 633 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 680 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 738 Query: 221 K 221 + Sbjct: 739 R 739 >gi|2981097|gb|AAC06233.1| double-stranded RNA-specific adenosine deaminase [Mus musculus] Length = 1152 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T ++ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 455 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 513 Query: 215 AAAEVL 220 AA + + Sbjct: 514 AAVKAM 519 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+ Sbjct: 566 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 624 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 625 AAEEAMKAL 633 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ Q AA L Sbjct: 680 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGRQDAADAAL 738 Query: 221 K 221 + Sbjct: 739 R 739 >gi|27768964|gb|AAH42505.1| Adenosine deaminase, RNA-specific [Mus musculus] Length = 1152 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T ++ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 455 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 513 Query: 215 AAAEVL 220 AA + + Sbjct: 514 AAVKAM 519 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+ Sbjct: 566 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 624 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 625 AAEEAMKAL 633 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 680 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 738 Query: 221 K 221 + Sbjct: 739 R 739 >gi|13591904|ref|NP_112268.1| double-stranded RNA-specific adenosine deaminase [Rattus norvegicus] gi|1706533|sp|P55266|DSRAD_RAT RecName: Full=Double-stranded RNA-specific adenosine deaminase; Short=DRADA gi|755817|gb|AAA65039.1| double-stranded RNA-specific adenosine deaminase [Rattus norvegicus] Length = 1175 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T ++ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 452 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 510 Query: 215 AAAEVL 220 AA + + Sbjct: 511 AAVKAM 516 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+ Sbjct: 563 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPSVSAPSKKVAKQM 621 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 622 AAEEAMKAL 630 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 677 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 735 Query: 221 K 221 + Sbjct: 736 R 736 >gi|74140777|dbj|BAC40888.2| unnamed protein product [Mus musculus] Length = 1173 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T ++ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 455 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 513 Query: 215 AAAEVL 220 AA + + Sbjct: 514 AAVKAM 519 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+ Sbjct: 566 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 624 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 625 AAEEAMKAL 633 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 680 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 738 Query: 221 K 221 + Sbjct: 739 R 739 >gi|71059975|emb|CAJ18531.1| Adar [Mus musculus] Length = 1152 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T ++ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 455 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 513 Query: 215 AAAEVL 220 AA + + Sbjct: 514 AAVKAM 519 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+ Sbjct: 566 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 624 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 625 AAEEAMKAL 633 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 680 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 738 Query: 221 K 221 + Sbjct: 739 R 739 >gi|226374645|gb|ACO52474.1| RNA transcript variant a adenosine deaminase [Loligo opalescens] Length = 786 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + E+++ ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 165 PKNALMQL--NEIKPGLEFQLMGQTGPVHAPTFNMKVEVNGEV-FEGAGPTKKKAKLQAA 221 Query: 217 AEVLK 221 + L+ Sbjct: 222 EKALR 226 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 14/69 (20%) Query: 148 LKSGKFRRDAK----TE-----LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + + ++ K T+ L E Y++ SGP HD F + V+I+ Sbjct: 25 IDNADPNKEPKPTITTKNPVMYLNELL----PEPLVYELVSESGPPHDRNFVMSVKINDD 80 Query: 199 APAQGMDCS 207 QG S Sbjct: 81 NV-QGAGRS 88 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 6/64 (9%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 ++ L ++ L E +Y+ SG H F + V + G+ +G Sbjct: 289 QKSTLPPQPPGKNPVMILNEL-----RPGLKYEFISESGESHTKTFVMQVTVDGVD-FEG 342 Query: 204 MDCS 207 + Sbjct: 343 SGRN 346 >gi|195447262|ref|XP_002071135.1| GK25300 [Drosophila willistoni] gi|194167220|gb|EDW82121.1| GK25300 [Drosophila willistoni] Length = 720 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YK+ ++GP H P FT+ V + G G SK+ A AAA L+ Sbjct: 158 TYKMESQTGPVHAPLFTISVVVDGQKY-MGQGRSKKVARIEAAATALR 204 >gi|226374647|gb|ACO52475.1| RNA transcript variant b adenosine deaminase [Loligo opalescens] Length = 687 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + E+++ ++GP H P F + VE++G +G +K+ A+ AA Sbjct: 66 PKNALMQL--NEIKPGLEFQLMGQTGPVHAPTFNMKVEVNGEV-FEGAGPTKKKAKLQAA 122 Query: 217 AEVLK 221 + L+ Sbjct: 123 EKALR 127 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 6/64 (9%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 ++ L ++ L E +Y+ SG H F + V + G+ +G Sbjct: 190 QKSTLPPQPPGKNPVMILNEL-----RPGLKYEFISESGESHTKTFVMQVTVDGVD-FEG 243 Query: 204 MDCS 207 + Sbjct: 244 SGRN 247 >gi|226371684|ref|NP_001033676.2| double-stranded RNA-specific adenosine deaminase isoform 2 [Mus musculus] Length = 930 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T ++ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 207 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 265 Query: 215 AAAEVL 220 AA + + Sbjct: 266 AAVKAM 271 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+ Sbjct: 318 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 376 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 377 AAEEAMKAL 385 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 432 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 490 Query: 221 K 221 + Sbjct: 491 R 491 >gi|74188545|dbj|BAE28026.1| unnamed protein product [Mus musculus] Length = 930 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T ++ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 207 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 265 Query: 215 AAAEVL 220 AA + + Sbjct: 266 AAVKAM 271 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+ Sbjct: 318 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 376 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 377 AAEEAMKAL 385 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 432 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 490 Query: 221 K 221 + Sbjct: 491 R 491 >gi|328710263|ref|XP_003244208.1| PREDICTED: hypothetical protein LOC100575225 [Acyrthosiphon pisum] Length = 407 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K T Y + +G H P FT + + + A G SK+ A+Q AAA++ ++ Sbjct: 5 EKKPFTVSYVLVAITGHAHKPIFTYMCQTHNMK-ALGEGKSKKEAKQNAAAQMCEKL 60 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 3/85 (3%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY--KVTFRSGPDHDPRFTVVVEISG 197 + +K A++ + LQE P Y ++ + + + V E+ Sbjct: 114 LQQFKYEAVQIAHCDMNPIGALQELCTTYKWTPPFYSFEILKKDLSEFKVLYKVTCEVFH 173 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKR 222 L G D K+ A++ AA + ++ Sbjct: 174 L-HTMGTDSFKKGAKRKAARLMYEK 197 >gi|328708088|ref|XP_001949570.2| PREDICTED: 39S ribosomal protein L44, mitochondrial-like [Acyrthosiphon pisum] Length = 348 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 82/241 (34%), Gaps = 35/241 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILG 52 KR+G F N +LL++ALT S +E + L G + Sbjct: 64 AFSKRLGEEFNN-NLLQQALTERSYIIREEERQKNVGIEQPTLNLSDNKELVSKGSDFID 122 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFM 111 ++ L E + L S ET S V+ + + I + + K Sbjct: 123 DIVKRYLRTVLPRLPEEGIIGIHKYLTSIETLSHVSFHIGTSELILCAEFPVEKPT---- 178 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHA 167 ++V++S+IAAL G A FV + + + + L E Sbjct: 179 ---LSNVLKSIIAALIESSGDSRAALFVRDFIITQIADKDLHQFWEPEEPIKLLSEILAR 235 Query: 168 KFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLA--PAQGMDCSKRAAEQVAAAEVLKR 222 +PE ++ SG + F V + G + A ++AA + L++ Sbjct: 236 DGIQSPEPRLIGCSGK--NTILACFRVGLYTPDNKRMIGLGFGETVDIAHEMAARDSLRQ 293 Query: 223 E 223 Sbjct: 294 L 294 >gi|301768411|ref|XP_002919630.1| PREDICTED: protein SON-like [Ailuropoda melanoleuca] Length = 2336 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2247 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2306 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2307 TAATVVLQAMGL 2318 >gi|297287594|ref|XP_001093086.2| PREDICTED: protein SON-like [Macaca mulatta] Length = 2140 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2051 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2110 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2111 TAATVVLQAMGL 2122 >gi|296491682|gb|DAA33715.1| SON DNA-binding protein [Bos taurus] Length = 2136 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2047 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2106 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2107 TAATVVLQAMGL 2118 >gi|296232103|ref|XP_002807816.1| PREDICTED: LOW QUALITY PROTEIN: protein SON-like [Callithrix jacchus] Length = 2360 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2271 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2330 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2331 TAATVVLQAMGL 2342 >gi|167427274|gb|ABZ80253.1| SON DNA-binding protein isoform F (predicted) [Callithrix jacchus] Length = 2454 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2365 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2424 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2425 TAATVVLQAMGL 2436 >gi|149711170|ref|XP_001495912.1| PREDICTED: similar to mitochondrial ribosomal protein L44 [Equus caballus] Length = 332 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 11/191 (5%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 E L G ++ L F L L E VAR L + + Sbjct: 120 EDNRELSEQGSSFSQTCLTQFLEEAFPDLPTEGLQSLVGFLTGEEVVCHVARNLAVEQ-L 178 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155 +S++ ++ +++ AL G A F+ + + F Sbjct: 179 TLSAEFPVP-----PTVLQRTFFAVVGALLQSSGAGRAALFIRDFLITQMTGKELFEIWK 233 Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212 + L E + PE ++T +SG P + V + A+G + AE Sbjct: 234 IINPMGLLVEELKKRNIPAPESRLTRQSGSTTALPLYFVGLYCDKKLIAEGPGETVLVAE 293 Query: 213 QVAAAEVLKRE 223 + AA L++ Sbjct: 294 EEAARVALRKL 304 >gi|119630222|gb|EAX09817.1| SON DNA binding protein, isoform CRA_d [Homo sapiens] Length = 2482 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2393 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2452 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2453 TAATVVLQAMGL 2464 >gi|119630227|gb|EAX09822.1| SON DNA binding protein, isoform CRA_h [Homo sapiens] Length = 2459 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2429 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2430 TAATVVLQAMGL 2441 >gi|114683930|ref|XP_531438.2| PREDICTED: SON DNA-binding protein isoform 10 [Pan troglodytes] Length = 2459 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2429 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2430 TAATVVLQAMGL 2441 >gi|114683936|ref|XP_001165875.1| PREDICTED: similar to SON DNA binding protein isoform A isoform 7 [Pan troglodytes] Length = 2140 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2051 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2110 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2111 TAATVVLQAMGL 2122 >gi|74001159|ref|XP_857396.1| PREDICTED: similar to SON DNA-binding protein isoform A isoform 19 [Canis familiaris] Length = 2145 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2056 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2115 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2116 TAATVVLQAMGL 2127 >gi|74001165|ref|XP_535583.2| PREDICTED: similar to SON protein (SON3) (Negative regulatory element-binding protein) (NRE-binding protein) (DBP-5) (Bax antagonist selected in saccharomyces 1) (BASS1) isoform 2 [Canis familiaris] Length = 2464 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2375 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2434 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2435 TAATVVLQAMGL 2446 >gi|74001153|ref|XP_857275.1| PREDICTED: similar to SON DNA-binding protein isoform G isoform 16 [Canis familiaris] Length = 1442 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 1353 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 1412 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 1413 TAATVVLQAMGL 1424 >gi|139948494|ref|NP_001077163.1| SON DNA-binding protein [Bos taurus] gi|61966462|emb|CAG47115.1| SON DNA-binding protein [Bos taurus] Length = 2136 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2047 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2106 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2107 TAATVVLQAMGL 2118 >gi|17046373|gb|AAL34497.1|AF380179_1 SON DNA binding protein isoform A [Homo sapiens] Length = 2140 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2051 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2110 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2111 TAATVVLQAMGL 2122 >gi|47223534|emb|CAF98021.1| unnamed protein product [Tetraodon nigroviridis] Length = 687 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + P+YK+ GP H FTV + + + S + A+ AA L+ Sbjct: 20 NRIQPQYKLLSERGPAHAKIFTVQLALGEQVW-EAEGTSIKKAQHSTAARALE 71 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV--- 219 E A + ++V SGP H F V + G A+G SK+ +++ AA + Sbjct: 276 EIALKRNLC-VNFEVLKESGPPHMKSFLTRVTV-GEFSAEGEGNSKKLSKKRAAISILQD 333 Query: 220 LKREGI 225 LK+ I Sbjct: 334 LKKLPI 339 Score = 35.1 bits (80), Expect = 8.7, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 11/132 (8%) Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 E++++ N V+ E + + RV+ + + ++ ++ D Sbjct: 276 EIALKRNLCVNFEVLKESGPPHMKSFLTRVTVGEFSAEGEGNSKKLSKKRAAI--SILQD 333 Query: 130 GGIEVAGTFVDK---YWKQR---ALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFR 180 V+K ++K+R LK+G + + L + AK PEY + Sbjct: 334 LKKLPIIPAVEKPKLHYKKRTKTILKTGPDYGQGMNPISRLAQIQQAKKEKEPEYVLLSE 393 Query: 181 SGPDHDPRFTVV 192 G F + Sbjct: 394 RGMPRRREFIMQ 405 >gi|36546|emb|CAA45282.1| son-a [Homo sapiens] Length = 1523 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 1363 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 1422 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 1423 TAATVVLQAMGL 1434 >gi|328352939|emb|CCA39337.1| Ribonuclease 3 [Pichia pastoris CBS 7435] Length = 196 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 13/147 (8%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL--- 71 Y+ + LL + LTH S +H + E+L +G ++L L S + + S L Sbjct: 47 YSIPDNELLLQILTHKSFAHGLKPYNEKLSVIGFQLLKLQSSVHVISK-PSDSPYALNGK 105 Query: 72 ------SVRFNSLVSAETCSQVARELDLASFI---RVSSDLRKDVCSFMTSIQADVVESL 122 S+ S+ + ++ ++ A+E + + L S ++ V +L Sbjct: 106 NFDCLGSLLTKSIGNHKSLARFAKEKQFDQLVFWKKRDPTLEDPATSGEDTVLGKTVLAL 165 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK 149 I A+ L G +VA F++ ++ Sbjct: 166 IGAINLTHGKKVATEFIETELMPLLVE 192 >gi|224047671|ref|XP_002191239.1| PREDICTED: eukaryotic translation initiation factor 2-alpha kinase 2 [Taeniopygia guttata] Length = 561 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 R+ T++ + + Y+ +GP H P FTVVV+I+G G S Sbjct: 1 MDREYMTKINHYCQTRKLKL-VYETVDMTGPSHYPEFTVVVKINGQKYGTGTGKS 54 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + L ++ +Y R+G DH P +TV ISG +G + Sbjct: 99 NYVGRLNNFSQRTGL-LVDYPNRNRTGGDHAPTYTVSCTISGYVYGRGAGPT 149 >gi|321468042|gb|EFX79029.1| hypothetical protein DAPPUDRAFT_319983 [Daphnia pulex] Length = 130 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 5/79 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY-ERLEFLGDRILGLLIS-TLLFNHFDSA 66 E+ + Y F ++ +L +ALT +S + +RLE +GD L L + Sbjct: 55 FEEVLSYTFNDKEVLLEALT---YGNSIRSLNDQRLEVIGDAALEFLAALQFFKQSSLYH 111 Query: 67 KEGELSVRFNSLVSAETCS 85 G++S ++ V + S Sbjct: 112 SAGDISQLRSACVCDDIFS 130 >gi|239790094|dbj|BAH71631.1| ACYPI001280 [Acyrthosiphon pisum] Length = 348 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 81/241 (33%), Gaps = 35/241 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILG 52 KR+G F N LL++ALT S +E + L G + Sbjct: 64 AFSKRLGEEFNN-DLLQQALTERSYIIREEERQKNVGIEQPTLNLSDNKELVSKGSDFID 122 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFM 111 ++ L E + L S ET S V+ + + I + + K Sbjct: 123 DIVKRYLRTVLPRLPEEGIIGIHKYLTSIETLSHVSFHIGTSELILCAEFPVEKPT---- 178 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHA 167 ++V++S+IAAL G A FV + + + + L E Sbjct: 179 ---LSNVLKSIIAALIESSGDSRAALFVRDFIITQIADKDLHQFWEPEEPIKLLSEILAR 235 Query: 168 KFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLA--PAQGMDCSKRAAEQVAAAEVLKR 222 +PE ++ SG + F V + G + A ++AA + L++ Sbjct: 236 DGIQSPEPRLIGCSGK--NTILACFRVGLYTPDNKRMIGLGFGETVDIAHEMAARDSLRQ 293 Query: 223 E 223 Sbjct: 294 L 294 >gi|170031452|ref|XP_001843599.1| ribonuclease 3 [Culex quinquefasciatus] gi|167870165|gb|EDS33548.1| ribonuclease 3 [Culex quinquefasciatus] Length = 835 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 39/121 (32%), Gaps = 55/121 (45%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES-------------------------- 39 LEK I Y F NR L+ ALTH S ++ + Sbjct: 710 LDALEKYIDYTFTNRYTLQLALTHPSYKENFGTNPDHARNSLTNCGIRQPEYGDRKIHFM 769 Query: 40 --------------------YE---------RLEFLGDRILGLLISTLLFNHFDSAKEGE 70 YE RLEFLGD ++ + S LF+ F +EG Sbjct: 770 NTRKRGINTLISIMSRFGKEYETDSNITHNERLEFLGDAVVEFITSIHLFHMFPDLEEGR 829 Query: 71 L 71 + Sbjct: 830 M 830 >gi|291448524|ref|ZP_06587914.1| predicted protein [Streptomyces roseosporus NRRL 15998] gi|291351471|gb|EFE78375.1| predicted protein [Streptomyces roseosporus NRRL 15998] Length = 775 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 78/223 (34%), Gaps = 40/223 (17%) Query: 23 LEKALTHSSISHS--------YQESYERLEFLGDRILGLLISTLLFNH------FDSAKE 68 L +ALTHSS H +Q + L G +L L E Sbjct: 467 LTQALTHSSYVHENRTDVAAHHQRDNQLLAHHGSLVLNHLAKHARVGRILAHGLVPDEDE 526 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 + + + +T +++ L LA +R S S AD +S+ A + Sbjct: 527 ARMH----TPANEDT-ARLGTALALADGMRTGRGED----SQRRSTVADAAQSVAATAWR 577 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G + L +++ + T L FG+T Y+ R+G DH Sbjct: 578 LHGTRLLRR--RPAVLDGWLSELQYQHEPVTALN-LLTTMFGMTHHYE-YERTGLDHLQT 633 Query: 189 FTVVVEISGLAPAQG---------MD-CSKRAAEQVAAAEVLK 221 FT + +S A+G SK A++ A +VL+ Sbjct: 634 FTSTLVLSD---ARGRVHRWAVPPEGPSSKSDADKTTAQDVLE 673 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 13/167 (7%) Query: 46 LGDRILGLLIST-LLFNHFDSAKEGELSVR-FNSLVSAETCSQVARELDLASFIRVSSDL 103 LG + +++ + + S S + Q A E L +++ + Sbjct: 244 LGRSTIDVILIDAWIAQRQPEKVGTQASEHNRRSTEARRLLGQWATERGL---VQMGAGE 300 Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQ 162 + S+ V + L L G E+A VD + + D TE Q Sbjct: 301 AQ---RPAPSVAEGVARQIFGLLSLTGAHEIARRLVDVICVGLDHGTDQIGGADPLTEAQ 357 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 Y+ GPDHD R+ + G A+G +K+ Sbjct: 358 TLFAKDGL---SYE-YAEEGPDHDKRYIAIARTGGGRSARGEGRNKK 400 >gi|240277193|gb|EER40702.1| 60S ribosomal protein L3 [Ajellomyces capsulatus H143] gi|325094013|gb|EGC47323.1| 60S ribosomal protein [Ajellomyces capsulatus H88] Length = 394 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 71/242 (29%), Gaps = 57/242 (23%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L + L S S Q + + L LG +L + L + + L S + A+ Sbjct: 103 LARTLVDESADPSPQFNNKSLSILGSDLLTYYTAEHLISTYPRLPVKVLWAAMYSYIGAK 162 Query: 83 TCSQVARELDL-------------------------------ASFIRVSSDLRKD----- 106 + + RE L +F+R ++ K Sbjct: 163 PLAAMTREWGLEYAAEPGPEVDPGLLQFKRLPPDTGFETKSNGTFLRRDENMAKRSTSAR 222 Query: 107 ---VCSFMTSIQADVVE---------------SLIAALYLDGGIEVAGTFVDKYWKQRAL 148 +F S V +++ A+YL G A F +++ R L Sbjct: 223 IIYGGAFGESTLPYPVHHEGVTPNRACANFIRAVVGAVYLHAGRPAAKQFFKEHFMSRHL 282 Query: 149 KSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMD 205 R +L + + P K+ +G + P F V + +G Sbjct: 283 DMASLFSFRQPTRDLSKLCRREGFEDPVAKILSETGRHSNRPVFNVGIFSGPDKLGEGAG 342 Query: 206 CS 207 S Sbjct: 343 GS 344 >gi|225558238|gb|EEH06522.1| 60S ribosomal protein L3 [Ajellomyces capsulatus G186AR] Length = 394 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 71/242 (29%), Gaps = 57/242 (23%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L + L S S Q + + L LG +L + L + + L S + A+ Sbjct: 103 LARTLVDESADPSPQFNNKSLSILGSDLLTYYTAEHLISTYPRLPVKVLWAAMYSYIGAK 162 Query: 83 TCSQVARELDL-------------------------------ASFIRVSSDLRKD----- 106 + + RE L +F+R ++ K Sbjct: 163 PLAAMTREWGLEYAAEPGPEVDPGLLQFKRLPPDTGFETKSNGTFLRRDENMAKRSTSAR 222 Query: 107 ---VCSFMTSIQADVVE---------------SLIAALYLDGGIEVAGTFVDKYWKQRAL 148 +F S V +++ A+YL G A F +++ R L Sbjct: 223 IIYGGAFGESTLPYPVHHEGVTPNRACANFIRAVVGAVYLHAGRPAAKQFFKEHFMSRHL 282 Query: 149 KSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMD 205 R +L + + P K+ +G + P F V + +G Sbjct: 283 DMASLFSFRQPTRDLSKLCRREGFEDPVAKILSETGRHSNRPVFNVGIFSGPDKLGEGAG 342 Query: 206 CS 207 S Sbjct: 343 GS 344 >gi|224143644|ref|XP_002336064.1| predicted protein [Populus trichocarpa] gi|222869865|gb|EEF06996.1| predicted protein [Populus trichocarpa] Length = 61 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 A + P Y T +SG H P F VEI G+ +K+ AE AA Sbjct: 1 MAQREGCGLPTY-FTEKSGEAHAPTFISTVEIDGVIFTGKEARTKKQAEMSAAKTA 55 >gi|154285866|ref|XP_001543728.1| hypothetical protein HCAG_00774 [Ajellomyces capsulatus NAm1] gi|150407369|gb|EDN02910.1| hypothetical protein HCAG_00774 [Ajellomyces capsulatus NAm1] Length = 370 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 71/242 (29%), Gaps = 57/242 (23%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L + L S S Q + + L LG +L + L + + L S + A+ Sbjct: 79 LARTLVDESADPSPQFNNKSLSILGSDLLTYYTAEHLISTYPRLPVKVLWAAMYSYIGAK 138 Query: 83 TCSQVARELDL-------------------------------ASFIRVSSDLRKD----- 106 + + RE L +F+R ++ K Sbjct: 139 PLAAMTREWGLEYAAEPGPEVDPGLLQFKRLPPDTGFETKSNGTFLRRDENMAKRSTSAR 198 Query: 107 ---VCSFMTSIQADVVE---------------SLIAALYLDGGIEVAGTFVDKYWKQRAL 148 +F S V +++ A+YL G A F +++ R L Sbjct: 199 IIYGGAFGESTLPYPVHHEGVTPNRACANFIRAVVGAVYLHAGRPAAKQFFKEHFMSRHL 258 Query: 149 KSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMD 205 R +L + + P K+ +G + P F V + +G Sbjct: 259 DMASLFSFRQPTRDLSKLCRREGFEDPVAKILSETGRHSNRPVFNVGIFSGPDKLGEGAG 318 Query: 206 CS 207 S Sbjct: 319 GS 320 >gi|328857530|gb|EGG06646.1| hypothetical protein MELLADRAFT_63275 [Melampsora larici-populina 98AG31] Length = 400 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 7/131 (5%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 A + LE + Y F N++LL+K L + ++ +LE++GD +LGL + L Sbjct: 239 KASDLNALETSLKYRFHNKTLLQKVL----WPDPAERTFRKLEWIGDCLLGLWSAERLAE 294 Query: 62 HFDSAKEGE-LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ + L + F L T + A L ++ + A++VE Sbjct: 295 MGTETQKKKGLGLAFIELNCNTTLAAWADRW-LHPHKQLVKPKIGT-GDKVCKASANMVE 352 Query: 121 SLIAALYLDGG 131 L+ L++D G Sbjct: 353 CLVFVLFIDCG 363 >gi|302881925|ref|XP_003039873.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256720740|gb|EEU34160.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 383 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 68/259 (26%), Gaps = 60/259 (23%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +AL S + + L FLG + + L + L + E Sbjct: 89 LARALVVPSADKNPSFNNSNLAFLGSTFINYHVLEYLVCKWPRLPMSLLYEALRAYAGKE 148 Query: 83 TCSQVARELDLAS---------------------------FIRVSSDLR----------- 104 + Q+AR + + ++R +SD+ Sbjct: 149 SLHQIARRWGVEAAAAPGEEVDPGLLQWKPEASGLQTRWGYVRANSDITDRYVERRGISS 208 Query: 105 ---------------KDVCSFMTSIQADVVESLIAAL----YLDGGIEVAGTFVDKYWKQ 145 K Q + S + A+ Y G + FV + Sbjct: 209 RVVLDDEFGDMVAMPKTGEEGYKYYQHEAYASFVQAVVGAIYTHCGRDATRDFVKSHILS 268 Query: 146 RALKSGKFRRD--AKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQ 202 R + + EL + P ++ +G P F V V + Sbjct: 269 RDVDVSSMFQFQLPTRELAMLCAREGFEAPIARLESETGRLSRTPVFVVGVYSGPEKLGE 328 Query: 203 GMDCSKRAAEQVAAAEVLK 221 G S A A+ LK Sbjct: 329 GSGPSLDIARWNASMNALK 347 >gi|326913278|ref|XP_003202966.1| PREDICTED: hypothetical protein LOC100542052 [Meleagris gallopavo] Length = 847 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 53/162 (32%), Gaps = 21/162 (12%) Query: 44 EFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 +F G +L S L N A + + V+ +Q+ R++ R L Sbjct: 658 QFTGSTGAQILSSDELTNSGPQAWIRKDQFLRAAPVTGGMGAQLMRKMGW----REGEGL 713 Query: 104 RKDVCSFMTSIQADVVESLIAALYLD-----GGIEVAGTFVDKYWKQRALKSGKFRRDAK 158 K+ E + + +D G+ G K + + Sbjct: 714 GKNK------------EGSVEPIMVDFKTDRKGLVAVGEKAQKRSGHYVVMKDLSGKHPV 761 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + L E + + PE+ + SGPDH F V ++G Sbjct: 762 SALMEICNKRRWSPPEFVLVDDSGPDHRKHFIFKVRVNGNEY 803 >gi|145543444|ref|XP_001457408.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124425224|emb|CAK90011.1| unnamed protein product [Paramecium tetraurelia] Length = 327 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 63/154 (40%), Gaps = 28/154 (18%) Query: 16 AFANRSLLEKALTHS------------SISHSYQES-----YERLEF-LGDRILGLLIST 57 F N++LL +ALT+ + + E + LEF D +L S+ Sbjct: 7 QFKNKNLLIRALTNKIHELEYNQKSNQTYVYGNNEDLTVAGQQFLEFYFYDYMLLQGYSS 66 Query: 58 LLFNHFDS-----AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L F + K ++ L++ + +++ +L+L +F++V + ++ Sbjct: 67 FLAFRFPNQLSYFKKPNDIIQLRQRLINDQYLAEIGLQLNLQNFLKVGNQIQL---KTNQ 123 Query: 113 SIQADVVESLIAALYLD--GGIEVAGTFVDKYWK 144 + AD +++LI A Y D +E + + Sbjct: 124 KVLADTIKALIIAQYYDKYQDLESLRDLLYPVME 157 >gi|158323830|gb|ABW34418.1| RNase3 class I protein [Sweet potato chlorotic stunt virus] Length = 228 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 78/218 (35%), Gaps = 37/218 (16%) Query: 29 HS--SISHS--YQESYERLEFLGDRILGLLISTLLFNHFD-SAKEGELSVRFNSLVSAET 83 H SI HS +R E LGD + ++ +L + F +A LS+ +S Sbjct: 21 HRLDSIVHSVCTSGDRDRYEILGDWAVASYVTRMLTDLFKHNADAESLSLLRAHNISNVM 80 Query: 84 CSQVARELDL--ASFIRVSSDLRK------DVCSF----MTSIQADVVESLIAALYLDGG 131 ++V E + ++ ++ D + A+ E ++ L + Sbjct: 81 FAKVMVESKIFEDFYLWLTPDQMQLCRKTFAGGRGLYEVNVKFLANYFERIVGWLVVHDC 140 Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT----PEYKVTFRSGPDHDP 187 E F+D + K S ++ A++ L+EWA EY V Sbjct: 141 SESVEKFLDLFLKPHM--SFHIKKPARSILEEWAMKNNKRLDIHTGEYNVNK-------- 190 Query: 188 RFTVVVEISGLAPAQGMDC-SKRAAEQVA---AAEVLK 221 V V + G ++ D SK+ A A A E L Sbjct: 191 --VVYVLVDGQKVSRASDLISKKRAISKAVSIAVEALN 226 >gi|145545985|ref|XP_001458676.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124426497|emb|CAK91279.1| unnamed protein product [Paramecium tetraurelia] Length = 313 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 82/237 (34%), Gaps = 32/237 (13%) Query: 16 AFANRSLLEKALT---H------SSISHSYQESYERLEFLGDRILGLLISTL-LFNHFDS 65 F N LL +A T H + + E G ++L L F + Sbjct: 7 EFRNTKLLVQAFTNKIHEIEYFQKTGQQYQYGNNEDFSIAGQQLLEFYFYDYMLLQGFPN 66 Query: 66 -----AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 K ++ L++ + S++A L + + + + + + + +D V+ Sbjct: 67 QQSQFKKPSDIIQLRQRLINDKYLSEIAILLSIQNLLNIGN---QKSLKNNPKVLSDCVK 123 Query: 121 SLIAALYLD--GGIEVAGTFVDKYWKQRALKSGKFRR-----DAKTELQEWAHAKFGVT- 172 S+I A Y D +E + Q K + R + K+ E+ ++ G Sbjct: 124 SIIGAHYYDKQNDLEALRDIIHPIVVQLLNKGEQITRTQWKYNPKSSFLEYLNSYKGELN 183 Query: 173 ------PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 E+K + + + +E++ Q + +KR EQ E L + Sbjct: 184 INPKLTIEWKKDDSILNQNKSLYLISLELNSTMKVQKVGINKRETEQSVYLEALLQL 240 >gi|239945065|ref|ZP_04697002.1| hypothetical protein SrosN15_29015 [Streptomyces roseosporus NRRL 15998] gi|239991527|ref|ZP_04712191.1| hypothetical protein SrosN1_29757 [Streptomyces roseosporus NRRL 11379] Length = 591 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 78/223 (34%), Gaps = 40/223 (17%) Query: 23 LEKALTHSSISHS--------YQESYERLEFLGDRILGLLISTLLFNH------FDSAKE 68 L +ALTHSS H +Q + L G +L L E Sbjct: 283 LTQALTHSSYVHENRTDVAAHHQRDNQLLAHHGSLVLNHLAKHARVGRILAHGLVPDEDE 342 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 + + + +T +++ L LA +R S S AD +S+ A + Sbjct: 343 ARMH----TPANEDT-ARLGTALALADGMRTGRGED----SQRRSTVADAAQSVAATAWR 393 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G + L +++ + T L FG+T Y+ R+G DH Sbjct: 394 LHGTRLLRR--RPAVLDGWLSELQYQHEPVTALN-LLTTMFGMTHHYE-YERTGLDHLQT 449 Query: 189 FTVVVEISGLAPAQG---------MD-CSKRAAEQVAAAEVLK 221 FT + +S A+G SK A++ A +VL+ Sbjct: 450 FTSTLVLSD---ARGRVHRWAVPPEGPSSKSDADKTTAQDVLE 489 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 13/167 (7%) Query: 46 LGDRILGLLIST-LLFNHFDSAKEGELSVR-FNSLVSAETCSQVARELDLASFIRVSSDL 103 LG + +++ + + S S + Q A E L +++ + Sbjct: 60 LGRSTIDVILIDAWIAQRQPEKVGTQASEHNRRSTEARRLLGQWATERGL---VQMGAGE 116 Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQ 162 + S+ V + L L G E+A VD + + D TE Q Sbjct: 117 AQ---RPAPSVAEGVARQIFGLLSLTGAHEIARRLVDVICVGLDHGTDQIGGADPLTEAQ 173 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 Y+ GPDHD R+ + G A+G +K+ Sbjct: 174 TLFAKDGL---SYE-YAEEGPDHDKRYIAIARTGGGRSARGEGRNKK 216 >gi|255970532|gb|ACU45742.1| dicer-like protein 1 [Sporothrix schenckii] Length = 1021 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 28/68 (41%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 + +YERLE LGD L + + L+ E E V ++ + A E Sbjct: 784 NFQAGMGRNYERLELLGDSFLKMASTIALYTLAPDKNEFEYHVERMCMICNKNLFNNALE 843 Query: 91 LDLASFIR 98 + L +IR Sbjct: 844 IGLEEYIR 851 Score = 38.5 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%) Query: 13 IGYAFANRSLLEKALTHSSIS--HSYQESYERL 43 +GY F LL A+ H S + SY+RL Sbjct: 989 VGYTFTYPRLLRCAVMHPSYPRVYEQLPSYQRL 1021 >gi|194898749|ref|XP_001978930.1| GG11001 [Drosophila erecta] gi|190650633|gb|EDV47888.1| GG11001 [Drosophila erecta] Length = 321 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 80/238 (33%), Gaps = 35/238 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILG 52 KR+G +F + S L++A T S + ++ L G RI Sbjct: 69 AFSKRLGESF-DLSELQRAFTEKSFAQREEDRRRQLGIEESDLQIPHNSDLVEKGQRIAR 127 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 + L + L + L+S ET + V+ L I + Sbjct: 128 AYVEAFLQHQLPKVPNDGLQAIASFLLSTETLAHVSSHLGTKDLI--------QSTEYPP 179 Query: 113 SI--QADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAH 166 S A + ++I AL GIE A FV + Q+ L ++ L++ Sbjct: 180 SAESMAKSLHAVIGALASSSGIEKAFLFVRDFICTQLNQKDLLEVWTPQEPIQVLEKICQ 239 Query: 167 AKFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + E ++ G + + V + + +G + A + AA + L+ Sbjct: 240 ERKLGEAEPRLLGDCGK--NTVLAAYQVGIYANRQLLGKGFGEDLKTATETAAIDALQ 295 >gi|26324344|dbj|BAC25926.1| unnamed protein product [Mus musculus] Length = 125 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P+YK+ SGP H F+V + + S + A+Q A + L Sbjct: 20 HSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70 >gi|313212829|emb|CBY36745.1| unnamed protein product [Oikopleura dioica] Length = 596 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 1/84 (1%) Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 K+ +S + L + A P Y+V F + ++ Sbjct: 389 NVIKETEKQSPDISLHPVSRLAQIQQAAKEREPIYQVISEKSVQRKKEFIMQCIVNDKV- 447 Query: 201 AQGMDCSKRAAEQVAAAEVLKREG 224 +QG+ +K+ A+++AA +L G Sbjct: 448 SQGIGPNKKTAKKIAAEAMLVIMG 471 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 13/67 (19%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR-------------AAEQVA 215 + P+Y +T GP H FTV +E+ +G S + A+ A Sbjct: 81 NKLAPKYTLTGEEGPPHHKTFTVTLELGPGEKYEGSGTSIKKVNHLFCSKNNLFKAQHSA 140 Query: 216 AAEVLKR 222 A + ++ Sbjct: 141 AKKAIEN 147 Score = 40.1 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 12/72 (16%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG-----------LAPAQGMDCSKRAA 211 E A + T +++ GP H +++ + + A+G SK+ A Sbjct: 294 ELALKRNL-TVQFEKISEEGPPHLKHYSIRLHVGNPEEQEDNEQITYFTAEGQAQSKKLA 352 Query: 212 EQVAAAEVLKRE 223 + AA VL Sbjct: 353 RRKAAITVLDEM 364 Score = 38.1 bits (88), Expect = 1.00, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V + + G +++ A+ AA + L+ Sbjct: 222 KLFVVELTV-GEKVFHAEGRTRQQAKHSAATQALE 255 >gi|207111610|ref|ZP_03245772.1| ribonuclease III [Helicobacter pylori HPKX_438_CA4C1] Length = 43 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 18/41 (43%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 ++ GPDH F + + I A SK+ AEQ A Sbjct: 1 QLLKEKGPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 41 >gi|74192520|dbj|BAE43048.1| unnamed protein product [Mus musculus] Length = 705 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ + L E+A T ++ + +SGP H+PRF V I+G SK+ A+Q Sbjct: 8 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 66 Query: 215 AAAEVL 220 AA + + Sbjct: 67 AAVKAM 72 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+ Sbjct: 119 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 177 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 178 AAEEAMKAL 186 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 233 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 291 Query: 221 K 221 + Sbjct: 292 R 292 >gi|227206366|dbj|BAH57238.1| AT1G09700 [Arabidopsis thaliana] Length = 403 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAE 212 K+ LQE+A TP Y++ GP H F V + G+ G +++AAE Sbjct: 16 FKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGVRYNSLPGF-FNRKAAE 71 Score = 51.6 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 24/63 (38%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y+ +FT VEI G+ +K+ AE A Sbjct: 87 KNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGR 146 Query: 218 EVL 220 L Sbjct: 147 TAL 149 >gi|85719268|ref|YP_460036.1| VP11 [Liao ning virus] gi|56785927|gb|AAW29094.1| VP11 [Liao ning virus] Length = 198 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 QE+A P Y+ GP H+ FT+ +G+ SK+ A VAA ++L Sbjct: 15 QEYAIKLSESAPSYEDVGFEGPPHNRSFTISATFRDKKY-EGIGPSKKVARSVAANKIL 72 >gi|313237061|emb|CBY25144.1| unnamed protein product [Oikopleura dioica] Length = 1307 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 1/84 (1%) Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 K+ +S + L + A P Y+V F + ++ Sbjct: 1100 NVIKETEKQSPDISLHPVSRLAQIQQAAKEREPIYQVISEKSVQRKKEFIMQCIVNDKV- 1158 Query: 201 AQGMDCSKRAAEQVAAAEVLKREG 224 +QG+ +K+ A+++AA +L G Sbjct: 1159 SQGIGPNKKTAKKIAAEAMLVIMG 1182 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 13/67 (19%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR-------------AAEQVA 215 + P+Y +T GP H FTV +E+ +G S + A+ A Sbjct: 792 NKLAPKYTLTGEEGPPHHKTFTVTLELGPGEKYEGSGTSIKKVNHLFCSKNNLFKAQHSA 851 Query: 216 AAEVLKR 222 A + ++ Sbjct: 852 AKKAIEN 858 Score = 39.7 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 12/72 (16%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG-----------LAPAQGMDCSKRAA 211 E A + T +++ GP H +++ + + A+G SK+ A Sbjct: 1005 ELALKRNL-TVQFEKISEEGPPHLKHYSIRLHVGNPEEQEDNEQITYFTAEGQAQSKKLA 1063 Query: 212 EQVAAAEVLKRE 223 + AA VL Sbjct: 1064 RRKAAITVLDEM 1075 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V + + G +++ A+ AA + L+ Sbjct: 933 KLFVVELTV-GEKVFHAEGRTRQQAKHSAATQALE 966 >gi|297806101|ref|XP_002870934.1| hypothetical protein ARALYDRAFT_486948 [Arabidopsis lyrata subsp. lyrata] gi|297316771|gb|EFH47193.1| hypothetical protein ARALYDRAFT_486948 [Arabidopsis lyrata subsp. lyrata] Length = 770 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE + G EY+ + + F+V V +G GM +K+ A Q AA Sbjct: 659 SALQEIG-RRCGSKVEYRTVIST----NKELQFSVEVLFTGEKIGIGMGKTKKDAHQQAA 713 Query: 217 AEVLK 221 L+ Sbjct: 714 ENALR 718 >gi|312379836|gb|EFR25996.1| hypothetical protein AND_08191 [Anopheles darlingi] Length = 1167 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +Y++T +GP H RFTV +++ S + A+ AA + + Sbjct: 366 QYRLTGETGPAHSKRFTVTLKLGDEEYTS-EGASIKKAQHKAAGDAI 411 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 5/99 (5%) Query: 130 GGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGP--DH 185 GG+ K++++ G + + + L + A+ P Y + P Sbjct: 850 GGVATLKKKARNLIKEKSVAEGGLSEKENPISRLMQIQQARKEKQPVYALVEGDRPTTGR 909 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +FT+ V +G A G+ +K+AA+ AA +L G Sbjct: 910 RKQFTIEVTAAGKR-AVGVGMTKKAAKWTAAEALLIELG 947 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + + + E A + + ++V GP H F ++ G +G K Sbjct: 727 DPNAELKSPISLVHEMAVQRQL-SVVFEVISEKGPPHMTVFVTQCKV-GTIVTEGEGTGK 784 Query: 209 RAAEQVAAAEVLKRE 223 + +++ AA ++L++ Sbjct: 785 KLSKKRAAEKMLEQL 799 >gi|195572230|ref|XP_002104099.1| GD18627 [Drosophila simulans] gi|194200026|gb|EDX13602.1| GD18627 [Drosophila simulans] Length = 899 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEV 219 L E + P+YK+ GP ++ F VE++G +K+ A+ AAA Sbjct: 830 LNELTSKNKWMPPQYKLREDIGPAYNRSFLFSVEVNGQTFTPDRGCNNKKEAKLNAAALC 889 Query: 220 LKREGIW 226 L+ GI Sbjct: 890 LRALGIL 896 >gi|195330360|ref|XP_002031872.1| GM23818 [Drosophila sechellia] gi|194120815|gb|EDW42858.1| GM23818 [Drosophila sechellia] Length = 899 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEV 219 L E + P+YK+ GP ++ F VE++G +K+ A+ AAA Sbjct: 830 LNELTSKNKWMPPQYKLREDIGPAYNRSFLFSVEVNGQTFTPDRGCNNKKEAKLNAAALC 889 Query: 220 LKREGIW 226 L+ GI Sbjct: 890 LRALGIL 896 >gi|125777342|ref|XP_001359575.1| GA20947 [Drosophila pseudoobscura pseudoobscura] gi|54639322|gb|EAL28724.1| GA20947 [Drosophila pseudoobscura pseudoobscura] Length = 851 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC---SKRAAEQVAAA 217 L E P+Y + SGP H F VEI+G + D +K+ A+ AA Sbjct: 782 LNELTSKNRWTPPQYILQQESGPSHIRSFLFSVEINGQSYTP--DRPCNNKKEAKLNAAK 839 Query: 218 EVLKREGIW 226 L+ GI Sbjct: 840 LCLESLGIL 848 >gi|74001137|ref|XP_856935.1| PREDICTED: similar to SON DNA-binding protein isoform A isoform 9 [Canis familiaris] Length = 152 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 63 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 122 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 123 TAATVVLQAMGL 134 >gi|296416003|ref|XP_002837671.1| hypothetical protein [Tuber melanosporum Mel28] gi|295633552|emb|CAZ81862.1| unnamed protein product [Tuber melanosporum] Length = 321 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 57/125 (45%), Gaps = 11/125 (8%) Query: 15 YAFANRSL---LEKALTH-SSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 Y F+++ L L ++ H S + ++++E L ++G +L L + LL + F ++K+ Sbjct: 23 YDFSSKELEQLLYASVVHERSFASSPEQRDTFEALTWVGGSVLRGLTTVLLASMFPTSKK 82 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 L+ +L + ++R L L + I + I + + + + A+ Sbjct: 83 NVLNDIRQALEDKTFYAHLSRRLGLHNHISL-----TYPAGESDHILSGLFTAYVGAIQR 137 Query: 129 DGGIE 133 + G++ Sbjct: 138 ELGVD 142 Score = 37.0 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 26/65 (40%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + L E+A P + T ++ + ++G A + +K A+ +A+ Sbjct: 226 YTSRLMEYAAKCKLPQPSFNFTDNGCQGAAIQWCATINMNGADIASAVASTKLEAKHLAS 285 Query: 217 AEVLK 221 + L+ Sbjct: 286 KDALQ 290 >gi|17046379|gb|AAL34500.1|AF380182_1 SON DNA binding protein isoform D [Homo sapiens] Length = 147 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 58 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 117 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 118 TAATVVLQAMGL 129 >gi|327264051|ref|XP_003216830.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 2 [Anolis carolinensis] Length = 890 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G+ + SK+ A+ A +VL+ G+ T Sbjct: 409 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGITY-EASGPSKKTAKLHVAVKVLQDMGLPT 467 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 520 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 571 >gi|327264049|ref|XP_003216829.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 1 [Anolis carolinensis] Length = 835 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G+ + SK+ A+ A +VL+ G+ T Sbjct: 409 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGITY-EASGPSKKTAKLHVAVKVLQDMGLPT 467 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 520 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 571 >gi|111185526|gb|AAH60382.2| LOC398937 protein [Xenopus laevis] Length = 426 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K ++ ++VT +GP H F V + G G SK+ +++ AA VL+ Sbjct: 280 KRNMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGNGEGKSKKISKKNAAIAVLEEL 334 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + + L + AK PEY + G F + V++ G A+G + Sbjct: 370 MNPISRLAQIQQAKKDKEPEYILITERGLPRRREFVMQVKV-GNHTAEGTGTN 421 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + P YK+ GP H FTV + + + S Sbjct: 89 NKIQPLYKLLSEKGPAHSKMFTVQLTLGDQYW-EAEGTS 126 >gi|68533781|gb|AAH99038.1| LOC398937 protein [Xenopus laevis] Length = 380 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K ++ ++VT +GP H F V + G G SK+ +++ AA VL+ Sbjct: 303 KRNMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGNGEGKSKKISKKNAAIAVLEEL 357 >gi|242092788|ref|XP_002436884.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor] gi|241915107|gb|EER88251.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor] Length = 243 Score = 58.2 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K + + D KT+L +A V P YK+ GP H PRF V I G + Sbjct: 73 KPFESKTDFKTQLSVYAQKLGKVPPLYKLIQE-GPAHAPRFNAEVTIDGQTFGR 125 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRA 210 K+EL K PE+ V GP H P FT V ++ G SK+ Sbjct: 2 YKSELHALCSKKHCPKPEF-VHTCEGPVHSPVFTATVTLNEKKFCAGEGTPSKKE 55 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 3/71 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVA 215 K +QE A + + P Y + ++ + V+I +G SK+ AE A Sbjct: 163 YKNFIQEIAQKEGILLPVYNTVPTN-KEYSTAYKSSVQIK-CEIFEGEPRTSKKQAEMNA 220 Query: 216 AAEVLKREGIW 226 A + Sbjct: 221 AKIAYHHLALL 231 >gi|195153156|ref|XP_002017495.1| GL22329 [Drosophila persimilis] gi|194112552|gb|EDW34595.1| GL22329 [Drosophila persimilis] Length = 854 Score = 58.2 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC---SKRAAEQVAAA 217 L E P+Y + SGP H F VEI+G + D +K+ A+ AA Sbjct: 785 LNELTSKNRWTPPQYILQQESGPSHIRSFLFSVEINGQSYTP--DRPCNNKKEAKLNAAK 842 Query: 218 EVLKREGIW 226 L+ GI Sbjct: 843 LCLESLGIL 851 >gi|141795447|gb|AAI34870.1| Sb:cb627 protein [Danio rerio] Length = 658 Score = 58.2 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 4/87 (4%) Query: 139 VDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + + ++ L S + L + +YK+ +SGP H P FT+ V++ G Sbjct: 384 MKRNLRKAVLDSKAIDSNQPMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDG 441 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKREG 224 + SK+ A+ A +VL+ G Sbjct: 442 TVY-EASGSSKKTAKLHVAVKVLQAMG 467 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ SG HD RF + VE+ G +G + Sbjct: 525 KNPVMELNEKRRGL--KYELISESGGSHDKRFVMEVEVDGQK-FRGAGPN 571 >gi|326671063|ref|XP_707047.3| PREDICTED: spermatid perinuclear RNA-binding protein isoform 2 [Danio rerio] Length = 690 Score = 58.2 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 4/87 (4%) Query: 139 VDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + + ++ L S + L + +YK+ +SGP H P FT+ V++ G Sbjct: 384 MKRNLRKAVLDSKAIDSNQPMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDG 441 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKREG 224 + SK+ A+ A +VL+ G Sbjct: 442 TVY-EASGSSKKTAKLHVAVKVLQAMG 467 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ SG HD RF + VE+ G +G + Sbjct: 525 KNPVMELNEKRRGL--KYELISESGGSHDKRFVMEVEVDGQK-FRGAGPN 571 >gi|297805542|ref|XP_002870655.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata] gi|297316491|gb|EFH46914.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata] Length = 394 Score = 58.2 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 8/65 (12%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212 K +LQE A P Y R GPDH PRF V +G + R AE Sbjct: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFES---PTYCSTLRQAE 57 Query: 213 QVAAA 217 AA Sbjct: 58 HAAAE 62 Score = 55.9 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y RSG H P F+ VE++G++ +K+ AE+ AA Sbjct: 88 YKNLLQETAHRAGLDLPMYTSV-RSGSCHFPGFSCTVELAGMSFTGESAKTKKQAEKNAA 146 Query: 217 AEV---LKRE 223 LKR Sbjct: 147 IAAWSSLKRM 156 >gi|30693732|ref|NP_198923.2| DRB5 (DSRNA-BINDING PROTEIN 5); double-stranded RNA binding [Arabidopsis thaliana] gi|75244423|sp|Q8GY79|DRB5_ARATH RecName: Full=Double-stranded RNA-binding protein 5; AltName: Full=dsRNA-binding protein 5; Short=AtDRB5 gi|26450682|dbj|BAC42450.1| unknown protein [Arabidopsis thaliana] gi|32189297|gb|AAP75803.1| At5g41070 [Arabidopsis thaliana] gi|332007250|gb|AED94633.1| dsRNA-binding protein 5 [Arabidopsis thaliana] Length = 393 Score = 58.2 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 8/65 (12%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212 K +LQE A P Y R GPDH PRF V +G + R AE Sbjct: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFES---PTYCSTLRQAE 57 Query: 213 QVAAA 217 AA Sbjct: 58 HAAAE 62 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y RSG H P F+ VE++G+ +K+ AE+ AA Sbjct: 88 YKNLLQETAHRAGLDLPMYTSV-RSGSCHFPGFSCTVELAGMTFTGESAKTKKQAEKNAA 146 Query: 217 AEV---LKRE 223 LK+ Sbjct: 147 IAAWSSLKKM 156 >gi|149048040|gb|EDM00616.1| adenosine deaminase, RNA-specific, isoform CRA_a [Rattus norvegicus] Length = 634 Score = 58.2 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+ Sbjct: 48 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPSVSAPSKKVAKQM 106 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 107 AAEEAMKAL 115 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 162 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 220 Query: 221 K 221 + Sbjct: 221 R 221 >gi|9759153|dbj|BAB09709.1| unnamed protein product [Arabidopsis thaliana] Length = 384 Score = 58.2 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 8/65 (12%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212 K +LQE A P Y R GPDH PRF V +G + R AE Sbjct: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFES---PTYCSTLRQAE 57 Query: 213 QVAAA 217 AA Sbjct: 58 HAAAE 62 Score = 55.1 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K LQE AH P Y RSG H P F+ VE++G+ +K+ AE+ AA Sbjct: 88 YKNLLQETAHRAGLDLPMYTSV-RSGSCHFPGFSCTVELAGMTFTGESAKTKKQAEKNAA 146 Query: 217 AEV---LKRE 223 LK++ Sbjct: 147 IAAWSSLKKK 156 >gi|119183947|ref|XP_001242948.1| hypothetical protein CIMG_06844 [Coccidioides immitis RS] Length = 238 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 11/113 (9%) Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKF 169 A V++L+ A+YL G VA F +++ R L RD L + + Sbjct: 94 ATFVQALMGAIYLHCGRPVAKQFFKEHFMSRQLPVADLFSFAQPTRD----LTKLCAREG 149 Query: 170 GVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P ++ +G P F V + +G S A AA LK Sbjct: 150 FERPVARIISETGRLSRHPVFVVGIFSGQDLLGEGSGPSLTEARFRAAVAALK 202 >gi|157130321|ref|XP_001655660.1| hypothetical protein AaeL_AAEL011753 [Aedes aegypti] gi|108871912|gb|EAT36137.1| conserved hypothetical protein [Aedes aegypti] Length = 318 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 16/135 (11%) Query: 102 DLRKDVCSFMTSIQADVVESL------IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKF 153 D + + + V +L I D + A + +++ + Sbjct: 34 GEEIDGGNPNSKVFTTSVLALGFTSSGIGRSKKDSKHDAAYKLLKLLFEKGLSDIDVDND 93 Query: 154 RR-------DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 D TE+++ + PE+ SGP H P F I + +G+ Sbjct: 94 EHFLAVLSSDKVTEVRDICVQRNFEMPEFNCVRSSGPSHAPEFEYECRIGAIVR-RGIHK 152 Query: 207 SKRAAEQVAAAEVLK 221 +K+ A+Q A E++K Sbjct: 153 TKKGAKQAACNEMIK 167 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRS---GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 TELQE +K P Y T G + FT V G + G+ SK+ ++ Sbjct: 12 PITELQELCVSKKAPHPLYTFTGEEIDGGNPNSKVFTTSVLALGFT-SSGIGRSKKDSKH 70 Query: 214 VAAAEVLK 221 AA ++LK Sbjct: 71 DAAYKLLK 78 >gi|47523704|ref|NP_999484.1| double stranded RNA-dependent protein kinase [Sus scrofa] gi|29292936|dbj|BAC66439.1| double stranded RNA-dependent protein kinase [Sus scrofa] Length = 537 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 24/56 (42%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K V +Y+ ++GP H+ RFT V I + SK+ A+ A + Sbjct: 18 QQKNDVILKYRELCKTGPAHNLRFTYQVVIDEKEFPKAEGRSKKEAKNAAVKLAFE 73 Score = 55.1 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 20/44 (45%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G D +F +I G+ +K+ A+Q+AA + ++ Sbjct: 122 EPGEDGPEKFHYKCKIGRKVYGSGVGSTKQEAKQLAAKQAYEKL 165 >gi|302410091|ref|XP_003002879.1| RNase III domain-containing protein [Verticillium albo-atrum VaMs.102] gi|261357903|gb|EEY20331.1| RNase III domain-containing protein [Verticillium albo-atrum VaMs.102] Length = 279 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 21/145 (14%) Query: 25 KALTHSSISHSYQESYERLEFLG---------DRIL------GLLISTLLFNHFDSAKEG 69 A+TH S + + +RL FLG IL G +++ Sbjct: 133 LAVTHKSFDYGRRGFNDRLAFLGRQAVVLEVAQSILSAAPKPGAVVADEFNRQPFEHPAL 192 Query: 70 ELSVRFNS-----LVSAETCSQVARELDLASFIRVSSDL-RKDVCSFMTSIQADVVESLI 123 FN+ +VS E Q+A ++ L +R L S + + V ++I Sbjct: 193 ARLDNFNAQLPHDVVSREKIEQLAIDVGLDKVLRWKPRLPENLAGSGVQVVLNGAVHAII 252 Query: 124 AALYLDGGIEVAGTFVDKYWKQRAL 148 A+ L G EVAG V + + + Sbjct: 253 GAISLQHGAEVAGKIVRERILSQLV 277 >gi|312080789|ref|XP_003142750.1| hypothetical protein LOAG_07168 [Loa loa] gi|307762087|gb|EFO21321.1| hypothetical protein LOAG_07168 [Loa loa] Length = 397 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 81/233 (34%), Gaps = 30/233 (12%) Query: 12 RIGYAFANRSLLEKALTHSSI-------------------SHSYQESYERLEFLGDRILG 52 RIG ++++L +ALT +S S+ +E E+L LG +L Sbjct: 69 RIGAPETDKNVLIQALTDNSFYQRADIAEESANAQPSKQESYEMKEHNEQLIQLGSELLW 128 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L A E +S L+S E + +A L + + IR F Sbjct: 129 KSTCAYLRYGLPHAPEELISSLALKLISDEQIATLATYLGINNLIR--------TAEFPP 180 Query: 113 SI--QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 S + ++LIA L I + + ++ + L+ + G Sbjct: 181 SNASLCNAFKALIATLPYQRAIALIRNVIMAQLVDLDIEEVFPLAEPLAVLRFVIFSSTG 240 Query: 171 VTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + E ++ +G +P F + + QG + A +AA L R Sbjct: 241 MEVEPRLLRSAGEISAEPIFIAGIYANKRLIGQGPGETISIAVDMAAMNALMR 293 >gi|218189252|gb|EEC71679.1| hypothetical protein OsI_04153 [Oryza sativa Indica Group] Length = 559 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 6/128 (4%) Query: 22 LLEKALTH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 LL A H + + + + RL FLG +L L + G + R Sbjct: 164 LLYLAFQHLDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERV 223 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 +L+ + + L + + DL K + V +L A+YL G+ Sbjct: 224 FALIGKRAIPKWIKAASLHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEV 283 Query: 136 GTFVDKYW 143 + + + Sbjct: 284 YRVLFEAF 291 >gi|241954798|ref|XP_002420120.1| RNase III, putative; ribonuclease III, putative [Candida dubliniensis CD36] gi|223643461|emb|CAX42340.1| RNase III, putative [Candida dubliniensis CD36] Length = 666 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 78/234 (33%), Gaps = 36/234 (15%) Query: 22 LLEKALTHSSISHS-----------YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 LL + +T S + RL G I+ L + +L + + + Sbjct: 160 LLIRIMTDRSYRQPSDFIESSSSDYNKSHNGRLVLRGRAIMQLCLVEVLEESYPRLLDED 219 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 + + L++ ++ A +L ++ + + D I ++ + + L +G Sbjct: 220 IQFISHKLMTPIILTKFAFGYNLVDHLKYNFSVDADY-EEKLQIIGNIFLAYMGGLKTEG 278 Query: 131 -GIEVAGTFVDKYWKQRALKSGKFRRD---AKTELQEW-------AHAKFGV--TPEYKV 177 + FV + ++ + + ++ +K L E + + Y++ Sbjct: 279 YDLNDLKLFVKRLYEP--VIADYMNKNDVLSKVALVELDLLFKSVTNMLYLPRENIRYEI 336 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKREG----IW 226 H + + G+ S A+ AA ++L +G IW Sbjct: 337 IQVESDPH----VARILVDNEELGSGVSSVSFEEAKCRAAQDILNDQGRIMKIW 386 Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K +AK +L TP+Y+ + P+ + V+V + G+ G D +K+ A Sbjct: 591 KVDTNAKNDLYSKLGKAKISTPQYE--DKISPE--KVYHVLVSVKGIYLGGGFDLNKKLA 646 Query: 212 EQVAAAEVL 220 Q AA L Sbjct: 647 AQKAAMCAL 655 >gi|222619424|gb|EEE55556.1| hypothetical protein OsJ_03820 [Oryza sativa Japonica Group] Length = 511 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 6/128 (4%) Query: 22 LLEKALTH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 LL A H + + + + RL FLG +L L + G + R Sbjct: 142 LLYLAFQHLDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERV 201 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 +L+ + + L + + DL K + V +L A+YL G+ Sbjct: 202 FALIGKRAIPKWIKAASLHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEV 261 Query: 136 GTFVDKYW 143 + + + Sbjct: 262 YRVLFEAF 269 >gi|326427167|gb|EGD72737.1| hypothetical protein PTSG_04466 [Salpingoeca sp. ATCC 50818] Length = 2717 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 18/151 (11%) Query: 6 YSTLEKRIGYA--FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G+ NR+LL +ALTH S ++ + E+L +G + LL Sbjct: 2120 IAPLAEHLGFTGPSCNRALLLEALTHRSFLNNQLGNNEKLALIGRLCVRLLCIDKFVQTQ 2179 Query: 64 DSAKE-GELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDL-------RKDVCSFMTSI 114 D+A + +VS E Q A + + +I S + Sbjct: 2180 DNAPSVSSWDDICDEVVSTELLVQKAVDMFGMLPYILHDSGEFAELAASCAHAVRHRLPL 2239 Query: 115 QADVVE------SLIAALYLDGGIE-VAGTF 138 A E S+ A+++ G++ +A + Sbjct: 2240 PAGAEEVASFTLSVFGAVFMHYGLDGLAERW 2270 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 E L LGD L + L+ + S G + + L S S+ ++EL Sbjct: 1956 EHLAMLGDAYLQFAAAVHLYLKYPSRAVGPMCAQIAWLRSDGYLSKRSQELGF 2008 >gi|198457607|ref|XP_001360731.2| GA19106 [Drosophila pseudoobscura pseudoobscura] gi|198136042|gb|EAL25306.2| GA19106 [Drosophila pseudoobscura pseudoobscura] Length = 1008 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGMDCSKRAAEQ 213 + T+L + + P +++ ++G + R F + V SG A+G SK+ A++ Sbjct: 718 NPITKLIQLQQTRKEKEPIFELIAKNGNEASRRREFVMEVSASG-TTARGTGNSKKLAKR 776 Query: 214 VAAAEVLK 221 AA +L+ Sbjct: 777 SAAQALLE 784 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 6/75 (8%) Query: 150 SGKFRRDAKTEL---QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 SG+ +D KT + E A +T +Y++T GP H FTV +++ Sbjct: 307 SGRSGKD-KTPMCLVNELA-RYNKITHQYRLTGERGPAHCKTFTVTLKLGDEEY-SADGF 363 Query: 207 SKRAAEQVAAAEVLK 221 + A+ +AA+ ++ Sbjct: 364 KIKKAQHMAASRAIE 378 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 K +T +KV GP H F + G +G K+ +++ +A ++L Sbjct: 596 KRNMTVHFKVLREDGPAHMKNFITACVV-GSIVTEGEGNGKKLSKKRSAEKML 647 >gi|195150825|ref|XP_002016351.1| GL10536 [Drosophila persimilis] gi|194110198|gb|EDW32241.1| GL10536 [Drosophila persimilis] Length = 638 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGMDCSKRAAEQ 213 + T+L + + P +++ ++G + R F + V SG A+G SK+ A++ Sbjct: 348 NPITKLIQLQQTRKEKEPIFELIAKNGNEASRRREFVMEVSASG-TTARGTGNSKKLAKR 406 Query: 214 VAAAEVLK 221 AA +L+ Sbjct: 407 SAAQALLE 414 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 K +T +KV GP H F + G +G K+ +++ +A ++L Sbjct: 226 KRNMTVHFKVLREDGPAHMKNFITACVV-GSIVTEGEGNGKKLSKKRSAEKML 277 >gi|195335472|ref|XP_002034389.1| GM19927 [Drosophila sechellia] gi|194126359|gb|EDW48402.1| GM19927 [Drosophila sechellia] Length = 1035 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 4/80 (5%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPA 201 K + + + T+L + + P +++ ++G + R F + V SG + A Sbjct: 702 KDKLIDMDDAD-NPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASG-STA 759 Query: 202 QGMDCSKRAAEQVAAAEVLK 221 +G SK+ A++ AA + + Sbjct: 760 RGTGNSKKLAKRNAAQALFE 779 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++T GP H FTV + + + A+ +AA++ ++ Sbjct: 330 QYRLTGERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAASKAIE 376 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 K +T +KV GP H F + G +G K+ +++ AA ++L Sbjct: 591 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKML 642 >gi|24654775|ref|NP_725748.1| staufen, isoform B [Drosophila melanogaster] gi|7302673|gb|AAF57753.1| staufen, isoform B [Drosophila melanogaster] gi|27819870|gb|AAO24983.1| LP08764p [Drosophila melanogaster] Length = 914 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 4/80 (5%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPA 201 K + + + T+L + + P +++ ++G + R F + V SG + A Sbjct: 588 KDKLIDMDDAD-NPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASG-STA 645 Query: 202 QGMDCSKRAAEQVAAAEVLK 221 +G SK+ A++ AA + + Sbjct: 646 RGTGNSKKLAKRNAAQALFE 665 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++T GP H FTV + + + A+ +AA++ ++ Sbjct: 216 QYRLTEERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAASKAIE 262 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 K +T +KV GP H F + G +G K+ +++ AA ++L Sbjct: 477 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKML 528 >gi|241600828|ref|XP_002405209.1| ATP-dependent RNA helicase, putative [Ixodes scapularis] gi|215502478|gb|EEC11972.1| ATP-dependent RNA helicase, putative [Ixodes scapularis] Length = 1095 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAA 216 KT L W K VTP+Y+ +GP H RF V + G G +K+ A+ AA Sbjct: 6 KTFLYAWC-GKNKVTPQYEF-KNTGPRHRQRFLCEVRVEGYDYVGAGNSTNKKDAQTNAA 63 Query: 217 AEVLK 221 + L+ Sbjct: 64 RDFLQ 68 Score = 39.7 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV----VE-ISGLAPAQGMDCSKRA 210 +AK+ L ++ + +Y GP H+ F V ++ A+ +K+ Sbjct: 154 NAKSRLHQFMQ-MNKINADY-TYSEIGPSHNKSFIAEMAIFVRKLNMKVHAREQGSNKQI 211 Query: 211 AEQVAAAEVLKRE 223 A + A ++++ Sbjct: 212 ASKSCALSLVRQL 224 >gi|115440603|ref|NP_001044581.1| Os01g0810100 [Oryza sativa Japonica Group] gi|20160696|dbj|BAB89639.1| unknown protein [Oryza sativa Japonica Group] gi|113534112|dbj|BAF06495.1| Os01g0810100 [Oryza sativa Japonica Group] gi|215701330|dbj|BAG92754.1| unnamed protein product [Oryza sativa Japonica Group] gi|215704464|dbj|BAG93898.1| unnamed protein product [Oryza sativa Japonica Group] Length = 533 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 6/128 (4%) Query: 22 LLEKALTH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 LL A H + + + + RL FLG +L L + G + R Sbjct: 164 LLYLAFQHLDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERV 223 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 +L+ + + L + + DL K + V +L A+YL G+ Sbjct: 224 FALIGKRAIPKWIKAASLHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEV 283 Query: 136 GTFVDKYW 143 + + + Sbjct: 284 YRVLFEAF 291 >gi|92097815|gb|AAI15333.1| Sb:cb627 protein [Danio rerio] Length = 658 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 412 RIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTVY-EASGSSKKTAKLHVAVKVLQAMG 467 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ SG HD RF + VE+ G +G + Sbjct: 525 KNPVMELNEKRRGL--KYELISESGGSHDKRFVMEVEVDGQK-FRGAGPN 571 >gi|71834292|ref|NP_001025236.1| interleukin enhancer binding factor 3a [Danio rerio] gi|66911683|gb|AAH96956.1| Zgc:113842 [Danio rerio] Length = 820 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 3/72 (4%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 R++ L + + G YK+ ++GP+H+P+F++ VE+ G+ + SKR+A+ Sbjct: 456 RKEPPNALMKLNQLRPGT--VYKLASQTGPEHEPQFSMTVEVDGVTY-EATGPSKRSAKL 512 Query: 214 VAAAEVLKREGI 225 A +VL G+ Sbjct: 513 HVAQKVLVALGV 524 Score = 39.3 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 3/54 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 + K + E + + +Y++ G +D FT+ V++ G QG Sbjct: 567 LTKHGKNPVMELNEKRR--SLKYELVSVKGRFNDKTFTIEVDVDGQK-FQGSGS 617 >gi|195584465|ref|XP_002082027.1| GD25416 [Drosophila simulans] gi|194194036|gb|EDX07612.1| GD25416 [Drosophila simulans] Length = 1035 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 4/80 (5%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPA 201 K + + + T+L + + P +++ ++G + R F + V SG + A Sbjct: 702 KDKLIDMDDAD-NPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASG-STA 759 Query: 202 QGMDCSKRAAEQVAAAEVLK 221 +G SK+ A++ AA + + Sbjct: 760 RGTGNSKKLAKRNAAQALFE 779 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++T GP H FTV + + + A+ +AA++ ++ Sbjct: 330 QYRLTGERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAASKAIE 376 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 K +T +KV GP H F + G +G K+ +++ AA ++L Sbjct: 591 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKML 642 >gi|71019739|ref|XP_760100.1| hypothetical protein UM03953.1 [Ustilago maydis 521] gi|46099865|gb|EAK85098.1| hypothetical protein UM03953.1 [Ustilago maydis 521] Length = 281 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 16/150 (10%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI-----STLLFNHFDSAKEGELS 72 +N L +A+TH S ++ + R FLG R L LL + L A +S Sbjct: 112 SNPDLALRAVTHESYLNAREGHNRRFAFLGRRTLKLLTTLYLHARLQSTTKGDAAHNYIS 171 Query: 73 VRFNSLVSAETCS-------QVARELDLASFIRVSSDLRKDVCSFMT----SIQADVVES 121 S ++ ++ REL L + +R + + ++ VE+ Sbjct: 172 RLLESPTGVDSILTTHRLGDKIGRELGLENVMRWTPAVSDGQVGPRETGLFKVRGVAVEA 231 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 L+ A+Y G A F ++ L G Sbjct: 232 LVGAIYHQKGASEASKFFQRWILPSLLHDG 261 >gi|50286821|ref|XP_445840.1| hypothetical protein [Candida glabrata CBS 138] gi|49525146|emb|CAG58759.1| unnamed protein product [Candida glabrata] Length = 226 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 6/129 (4%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL-S 72 G ++ ++L + LTH S +H + E+L LG + L L + + + G L + Sbjct: 70 GIELSDAAIL-QCLTHKSFAHGSRPYNEKLNLLGSQYLKLQAA--MHSVGPENSFGNLGT 126 Query: 73 VRFNSLVSAETCSQ--VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 LVS +T ++ +A+ L+ F +VS L + + + V+ S I A+ L Sbjct: 127 PVSKGLVSYQTAAEYVIAKNLEPLVFWKVSDPLNDGPIKGKSKVMSTVLNSFIGAILLQQ 186 Query: 131 GIEVAGTFV 139 G + A F+ Sbjct: 187 GEKKASQFI 195 >gi|256076242|ref|XP_002574422.1| hypothetical protein [Schistosoma mansoni] gi|238659627|emb|CAZ30655.1| expressed protein [Schistosoma mansoni] Length = 351 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 77/241 (31%), Gaps = 27/241 (11%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH-----------SYQESYERLEFLGDRILGL 53 S RIG + L+E LT S S + L LG + Sbjct: 68 ELSAFLSRIGEKLE-KDLIEVVLTDRSYSSFWSVKKAESDSKIIQDNSELAALGFSVSEN 126 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 + L + + E + L S + +A L + + S + +++ Sbjct: 127 FLYPFLRSVYPQFPEEWIMTIVQYLKSPSELAFIAAHLGIKDIVLYSDQVDYSSNKIISA 186 Query: 114 -----IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEW 164 + A + +L+ AL D +E A F+ + R + LQ Sbjct: 187 PPNLDVLAHALMALVGALAKDK-MEKAHLFIRDFILTRLSDIDLTELISIPNPLPLLQGI 245 Query: 165 AHAKFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++ PE ++ ++S + F V + + S AE+ A + +K Sbjct: 246 LQSEGRGPPETRLLYQS--SMNTVLACFEVGIYSDCQLVGEAPGESILIAEEEALRQSIK 303 Query: 222 R 222 Sbjct: 304 N 304 >gi|145611132|ref|XP_001410972.1| hypothetical protein [Magnaporthe oryzae 70-15] gi|145018454|gb|EDK02733.1| predicted protein [Magnaporthe oryzae 70-15] Length = 305 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 12/143 (8%) Query: 11 KRIGYAF--ANRSLLEKALTHSSISHSYQES------YERLEFLGDRILGLLISTLLFNH 62 K I Y F A+ L +AL ++I + Y S + L GD + + N+ Sbjct: 70 KIINYHFDAAHVLLAIEALETTTIPYRYTNSKREMRTNQVLAIYGDVVSAAQLCEFWINN 129 Query: 63 FDSAK--EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI--QADV 118 + G S L+ + ++V + L + + K+V S T + A Sbjct: 130 RPAHGLVPGNWSTLQMQLLGNQNLARVGKNAGLGTCMINGPIGNKEVVSKKTKMIRMATT 189 Query: 119 VESLIAALYLDGGIEVAGTFVDK 141 VE+++ A++ GG +++ Sbjct: 190 VEAILGAVHKAGGPRALRAVMER 212 >gi|145489315|ref|XP_001430660.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|74830695|emb|CAI39097.1| Dicer-like ribonuclease with mutated helicase and Rnase III domains [Paramecium tetraurelia] gi|124397759|emb|CAK63262.1| unnamed protein product [Paramecium tetraurelia] Length = 1596 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 79/245 (32%), Gaps = 72/245 (29%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI--------------------------------- 32 +S+LE +I Y F + LL +A+T S Sbjct: 1295 FSSLEYKIKYQFKHFELLFQAMTDISFKFVINNKLKFKYYEQFQKKEEFQGMIQEQQWIE 1354 Query: 33 --------SHSYQESYER--LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 + + Q +YE L LG + L +L + + + + L Sbjct: 1355 FKSQFECMNETDQNNYENSLLAMLGKALWNYLTIKILNEN--NLDCFAIKIVGKILSKTP 1412 Query: 83 TCSQVARELDLASFIR---------VSSDLRKD--------VCSFMTSIQADVVE----S 121 + +A +L L ++ ++S++ K + SI +E + Sbjct: 1413 FLAYLAIQLGLQQYLNSIYSTILLNLASEVEKCKDSSLAFKIGKIQKSIHTQCLETAFFA 1472 Query: 122 LIAALYLDGG------IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 L+ A+YLD ++ A +D Q+ +R K + +W + G + Sbjct: 1473 LVGAIYLDSNCSSNIVMQWATLILDNVQVQQFYSPDFIKRQPKYQFYQWYQSNIGNPFNF 1532 Query: 176 KVTFR 180 + Sbjct: 1533 NLIKI 1537 >gi|281363621|ref|NP_001163185.1| staufen, isoform C [Drosophila melanogaster] gi|33636635|gb|AAQ23615.1| LD13210p [Drosophila melanogaster] gi|272432536|gb|ACZ94457.1| staufen, isoform C [Drosophila melanogaster] Length = 1025 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 4/80 (5%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPA 201 K + + + T+L + + P +++ ++G + R F + V SG + A Sbjct: 700 KDKLIDMDDAD-NPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASG-STA 757 Query: 202 QGMDCSKRAAEQVAAAEVLK 221 +G SK+ A++ AA + + Sbjct: 758 RGTGNSKKLAKRNAAQALFE 777 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++T GP H FTV + + + A+ +AA++ ++ Sbjct: 328 QYRLTEERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAASKAIE 374 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 K +T +KV GP H F + G +G K+ +++ AA ++L Sbjct: 589 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKML 640 >gi|47227654|emb|CAG09651.1| unnamed protein product [Tetraodon nigroviridis] Length = 850 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +Y++ +SGP H P FT+ V++ G Q SKR A+ A + L+ G Sbjct: 525 QYRLLSQSGPVHAPVFTMSVDVQGNTY-QATGNSKRTAKLQVALKALQALG 574 Score = 40.8 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K + E + G+ +Y++ SG +D RF + VE+ +G Sbjct: 663 KNPVMELNEKRRGL--KYELISESGSSYDKRFIIEVEVD-KQVFRGTGP 708 >gi|158506|gb|AAA73062.1| unnamed protein product [Drosophila melanogaster] Length = 1026 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 4/80 (5%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPA 201 K + + + T+L + + P +++ ++G + R F + V SG + A Sbjct: 700 KDKLIDMDDAD-NPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASG-STA 757 Query: 202 QGMDCSKRAAEQVAAAEVLK 221 +G SK+ A++ AA + + Sbjct: 758 RGTGNSKKLAKRNAAQALFE 777 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++T GP H FTV + + + A+ +AA++ ++ Sbjct: 328 QYRLTEERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAASKAIE 374 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 K +T +KV GP H F + G +G K+ +++ AA ++L Sbjct: 589 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKML 640 >gi|17136520|ref|NP_476751.1| staufen, isoform A [Drosophila melanogaster] gi|71153175|sp|P25159|STAU_DROME RecName: Full=Maternal effect protein staufen gi|7302672|gb|AAF57752.1| staufen, isoform A [Drosophila melanogaster] Length = 1026 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 4/80 (5%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPA 201 K + + + T+L + + P +++ ++G + R F + V SG + A Sbjct: 700 KDKLIDMDDAD-NPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASG-STA 757 Query: 202 QGMDCSKRAAEQVAAAEVLK 221 +G SK+ A++ AA + + Sbjct: 758 RGTGNSKKLAKRNAAQALFE 777 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++T GP H FTV + + + A+ +AA++ ++ Sbjct: 328 QYRLTEERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAASKAIE 374 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 K +T +KV GP H F + G +G K+ +++ AA ++L Sbjct: 589 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKML 640 >gi|170083875|ref|XP_001873161.1| predicted protein [Laccaria bicolor S238N-H82] gi|164650713|gb|EDR14953.1| predicted protein [Laccaria bicolor S238N-H82] Length = 193 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 13/116 (11%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 SSI ++ E +RLEF+GD ++ +S L+ G + ++L + T + + Sbjct: 41 SSICNNSAER-DRLEFVGDALMSGTVSEELYRIRIQGSPGFYTNARSALTANSTFAHLMH 99 Query: 90 ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 L D E++IAA + E + + Q Sbjct: 100 RLGHHDM------------RDKVKPAGDAFETIIAAYRNETSAEAFQQWFRDNFTQ 143 >gi|162463399|ref|NP_001106055.1| ribonuclease III domain protein1 [Zea mays] gi|149980667|gb|ABR53724.1| chloroplast ribonuclease III domain protein [Zea mays] gi|194704042|gb|ACF86105.1| unknown [Zea mays] gi|195647406|gb|ACG43171.1| RNA binding protein [Zea mays] gi|223950477|gb|ACN29322.1| unknown [Zea mays] Length = 525 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 6/128 (4%) Query: 22 LLEKALTH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 L A H + + + RL FLG +L L + G + R Sbjct: 156 LFYLAFQHLDPSSERTRMRHVRNGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERV 215 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 +L+ + + + L + + DL K + V ++ A+YL G+ Sbjct: 216 FALIGKKVLPRWLKAASLHNLVFPYDDLDKMIRKDREPPSKAVFWAIFGAIYLCFGMPEV 275 Query: 136 GTFVDKYW 143 + + + Sbjct: 276 YRVLFEAF 283 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 10/145 (6%) Query: 18 ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + YERLE++G +I L+++ L A L+ Sbjct: 382 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDLVMAERLLMKHLDAPGRWLA 441 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFMTSIQADVVESLIAALYL 128 + + + C + R+ L +I + S V ++L Y Sbjct: 442 EKHRRTLMNKYCGRYLRDKHLQHYIIYGETVQDRFEHNRRLRNPST-TSVQQALHGLAYC 500 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF 153 G + + + ++ Sbjct: 501 VYGKPDVRRLMFEVFDFEQVQPKAV 525 >gi|49257953|gb|AAH74107.1| Unknown (protein for IMAGE:6866473) [Xenopus laevis] Length = 477 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ + SK+ A+ A +VL+ G+ T Sbjct: 412 QLKPGLQYKLISQTGPVHAPVFTMSVEVDDKT-FEASGPSKKTAKLHVAVKVLQDMGLPT 470 >gi|255569488|ref|XP_002525711.1| hypothetical protein RCOM_1321840 [Ricinus communis] gi|223535011|gb|EEF36694.1| hypothetical protein RCOM_1321840 [Ricinus communis] Length = 162 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 KT+LQE H K PEY T G DH+P F V ++G Sbjct: 2 YKTKLQELCHQKTWSLPEYSTTKV-GQDHNPIFHATVIVNG 41 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 1/66 (1%) Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 A ++ +L + K LQ +A + P Y R GP H F V Sbjct: 60 AAKLAFDHFSSVSLPPDVQQHLYKNLLQSYAQKRGLPLPMYSC-ERQGPPHASLFKCKVT 118 Query: 195 ISGLAP 200 I G + Sbjct: 119 IDGKSY 124 >gi|157818491|ref|NP_001099651.1| tRNA-dihydrouridine synthase 2-like [Rattus norvegicus] gi|149038072|gb|EDL92432.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) (predicted), isoform CRA_a [Rattus norvegicus] gi|165971659|gb|AAI58729.1| Dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) [Rattus norvegicus] Length = 493 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 16/142 (11%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI-EVAGTFVDKYWK 144 ++ L +F D +++ + + A E++ GI ++A F + + Sbjct: 309 EICEAFGLGTF---YEDTIRELDARRADLLAKTPEAVEEPAEDTSGIIKMAIRFDRRAYP 365 Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQG 203 + KT L EW + P Y+ R D F VV ++ + Sbjct: 366 PQIT--------PKTCLLEWCRREKLPQPVYETVQR---PIDRMFCSVVTVAEQKYQSTL 414 Query: 204 MDCSKRAAEQVAAAEVLKREGI 225 D SK+ AEQ AA L+ +G+ Sbjct: 415 WDKSKKLAEQTAAIVCLRSQGL 436 >gi|327276491|ref|XP_003223003.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Anolis carolinensis] Length = 488 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 K L EW P Y+ R D F VV ++ + + SK+ AEQ A Sbjct: 368 PKMHLLEWCRKGKLPQPVYETIER---PRDRLFCSVVTVAEQKYSSTLWEKSKKLAEQAA 424 Query: 216 AAEVLKREGI 225 A L+ G+ Sbjct: 425 AIACLRALGL 434 >gi|326915415|ref|XP_003204013.1| PREDICTED: interferon-induced, double-stranded RNA-activated protein kinase-like [Meleagris gallopavo] Length = 545 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 1/49 (2%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 ++L + +Y GP HDP FTV V I G S Sbjct: 7 SKLNSYCQRNKYKL-DYIDVDMRGPSHDPEFTVTVRIDNKEYGTGTGKS 54 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 D + L +++ + +Y R+G H P ++ ISG G+ S Sbjct: 99 DYVSLLNKYSQ-RTLQLVDYNNINRTGDAHAPMYSCSCTISGHVYGNGIGNS 149 >gi|224157911|ref|XP_002199819.1| PREDICTED: similar to interleukin enhancer binding factor 3, 90kDa, partial [Taeniopygia guttata] Length = 755 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VEI G + + SK+ A+ A +VL+ G+ T Sbjct: 408 QLKPGLQYKLVSQTGPVHAPIFTMSVEIDG-STFEASGPSKKTAKLHVAVKVLQDMGLPT 466 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 523 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 574 >gi|312067398|ref|XP_003136724.1| double-stranded RNA binding domain-containing protein family protein [Loa loa] gi|307768110|gb|EFO27344.1| double-stranded RNA binding domain-containing protein family protein [Loa loa] Length = 445 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 51/156 (32%), Gaps = 10/156 (6%) Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--TSIQADVVESLIAALY-LDGGIE 133 + V A +L + K + M ++ ++E + + L E Sbjct: 110 AFVEMPNL--FAIRCELYGIHTIGHGRTKKIAKQMAAKNMLKKMIEKESFSDFELGKTKE 167 Query: 134 VAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 A ++ ++ R + ++ E + Y+ GP + F Sbjct: 168 EALASLENLTIDFQNRGSGDDSVAENWVGKVNERCQKLKLSSVNYE-IDEEGPPNHRIFI 226 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 ++ G G +K+ A+ +AA ++ + W Sbjct: 227 ATCKM-GKVHVVGHGKTKKIAKTLAAQKMYAQLENW 261 >gi|195109694|ref|XP_001999418.1| GI24499 [Drosophila mojavensis] gi|193916012|gb|EDW14879.1| GI24499 [Drosophila mojavensis] Length = 321 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 77/231 (33%), Gaps = 29/231 (12%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55 KR+ F +L+ A T + ++ QE ++L+ G I + Sbjct: 72 KRLNEEFQ-LPILQIAFTQQAYANQEQERQRKLGIAEADLQISDNKQLKAKGAHITRAYV 130 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 L + + L+S ET + V+ L I + Sbjct: 131 EAYLQHSLPKLPPAGQKAITSYLLSTETLAHVSMHLGTKELIF------STEYPPNSETL 184 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFG 170 A+ ++++I AL G++ A FV + ++ L + L E + + Sbjct: 185 AETLQAIIGALADSSGVDRAFLFVRDFICTQLNQKDLLDIWTPEQ-PLELLSEICNQRKL 243 Query: 171 VTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 PE ++ G + F V + +G + + A + AA L Sbjct: 244 GEPEPRLLGDCGKNTLLAAFQVGIYADRQLLGKGFGENVQTATETAAICAL 294 >gi|115976356|ref|XP_001183590.1| PREDICTED: similar to dsRNA adenosine deaminase [Strongylocentrotus purpuratus] Length = 1733 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 ++ + L E+A A+ + +SGP H+PRF + G SK+ Sbjct: 1244 AAINKNPVSALTEYAQARHLP-VSIDLLQQSGPPHNPRFVFAACVGGRRFQHVTSRSKKD 1302 Query: 211 AEQVAAAEVLK 221 + AA L+ Sbjct: 1303 GRREAADMALR 1313 >gi|115722979|ref|XP_789034.2| PREDICTED: similar to dsRNA adenosine deaminase, partial [Strongylocentrotus purpuratus] Length = 1069 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 ++ + L E+A A+ + +SGP H+PRF + G SK+ Sbjct: 580 AAINKNPVSALTEYAQARHLP-VSIDLLQQSGPPHNPRFVFAACVGGRRFQHVTSRSKKD 638 Query: 211 AEQVAAAEVLK 221 + AA L+ Sbjct: 639 GRREAADMALR 649 >gi|157107677|ref|XP_001649886.1| ATP-dependent RNA helicase [Aedes aegypti] gi|108879498|gb|EAT43723.1| ATP-dependent RNA helicase [Aedes aegypti] Length = 1131 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213 +D K+ EW K TP ++V +GP + RF V + A G +K+ AE+ Sbjct: 1 KDIKSFFYEWCQ-KGSFTPSFEV-RPTGPKNRQRFLCEVRVPSEAYVGAGNSTNKKDAER 58 Query: 214 VAAAE 218 AA + Sbjct: 59 NAARD 63 Score = 42.4 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-----AQGMDCSKRA 210 +AK +L +W + P+YK T GPDH F + I + +K++ Sbjct: 170 NAKAKLNQWLQ-MNRMNPDYKYTAV-GPDHARSFMAEMTIYVKQLSRNITGRESGSNKQS 227 Query: 211 AEQVAAAEVLKRE 223 A + A ++++ Sbjct: 228 ASKSCALSLVRQL 240 >gi|317030485|ref|XP_001392667.2| 60S ribosomal protein L3 [Aspergillus niger CBS 513.88] Length = 406 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 11/113 (9%) Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKF 169 A V +++ A+YL G A F ++++ R L RD L + Sbjct: 262 ATFVRAVMGAIYLHAGRPAAKRFFEQHFLSRHLNISDLFNFSQPARD----LARLCAREN 317 Query: 170 GVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P ++ +G P F V + +G S A AA LK Sbjct: 318 FEQPVARIISETGRKSRHPVFVVGIYSGQDKLGEGAGASLLEARSRAAVAALK 370 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 3/96 (3%) Query: 2 SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + + + L R+ Y + L L ++L +S + + + E L LG +L S L Sbjct: 81 ESAKLAALHARL-YLPSRLPLETLARSLVDASADPNPKFNNESLATLGHDLLTHYTSEYL 139 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95 + + + V +T + +ARE + S Sbjct: 140 ICTYPRLPLTVIFAAMYAYVGPKTLAAMAREWGVES 175 >gi|194880953|ref|XP_001974617.1| GG20993 [Drosophila erecta] gi|190657804|gb|EDV55017.1| GG20993 [Drosophila erecta] Length = 1034 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 4/80 (5%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPA 201 K + + + T+L + + P +++ ++G + R F + V SG + A Sbjct: 701 KDKLIDLDDAD-NPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASG-STA 758 Query: 202 QGMDCSKRAAEQVAAAEVLK 221 +G SK+ A++ AA + + Sbjct: 759 RGTGNSKKLAKRNAAQALFE 778 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++T GP H FTV + + + A+ +AA++ ++ Sbjct: 329 QYRLTGERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAASKAIE 375 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 K +T +KV GP H F + G +G K+ +++ AA ++L Sbjct: 590 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKML 641 >gi|332853012|ref|XP_001166193.2| PREDICTED: interleukin enhancer-binding factor 3 isoform 3 [Pan troglodytes] Length = 690 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|332112807|gb|AEE02020.1| NF110b [Homo sapiens] Length = 898 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576 >gi|332112805|gb|AEE02019.1| NF90b [Homo sapiens] Length = 706 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576 >gi|332112803|gb|AEE02018.1| NF90a [Homo sapiens] Length = 702 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|332253325|ref|XP_003275796.1| PREDICTED: LOW QUALITY PROTEIN: interleukin enhancer-binding factor 3-like [Nomascus leucogenys] Length = 898 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576 >gi|311248674|ref|XP_003123290.1| PREDICTED: interleukin enhancer-binding factor 3-like [Sus scrofa] Length = 856 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 523 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 574 >gi|301772006|ref|XP_002921413.1| PREDICTED: interleukin enhancer-binding factor 3-like [Ailuropoda melanoleuca] Length = 897 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 408 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 466 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 522 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 573 >gi|297703573|ref|XP_002828712.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 2 [Pongo abelii] Length = 669 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 378 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 436 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 488 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 539 >gi|297703571|ref|XP_002828711.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 1 [Pongo abelii] Length = 861 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 378 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 436 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 488 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 539 >gi|297276121|ref|XP_002801113.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 3 [Macaca mulatta] Length = 764 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|297276119|ref|XP_001102411.2| PREDICTED: interleukin enhancer-binding factor 3-like isoform 1 [Macaca mulatta] Length = 690 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|297276117|ref|XP_002801112.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 2 [Macaca mulatta] Length = 706 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576 >gi|296232891|ref|XP_002807844.1| PREDICTED: LOW QUALITY PROTEIN: interleukin enhancer-binding factor 3-like [Callithrix jacchus] Length = 895 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|291414148|ref|XP_002723321.1| PREDICTED: interleukin enhancer binding factor 3 [Oryctolagus cuniculus] Length = 896 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 408 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 466 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 522 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 573 >gi|281337392|gb|EFB12976.1| hypothetical protein PANDA_010307 [Ailuropoda melanoleuca] Length = 896 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 A + + K + E + G+ +Y++ +G HD RF + VE+ G QG Sbjct: 512 DPTAEQGPILTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQG 568 Query: 204 MDCS 207 + Sbjct: 569 AGSN 572 >gi|194376558|dbj|BAG57425.1| unnamed protein product [Homo sapiens] Length = 506 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 215 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 273 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 325 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 376 >gi|194375538|dbj|BAG56714.1| unnamed protein product [Homo sapiens] Length = 288 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 9 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 67 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 119 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 170 >gi|194213163|ref|XP_001491016.2| PREDICTED: interleukin enhancer binding factor 3, 90kDa [Equus caballus] Length = 702 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|158255846|dbj|BAF83894.1| unnamed protein product [Homo sapiens] Length = 702 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|119604539|gb|EAW84133.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_c [Homo sapiens] Length = 858 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576 >gi|119604543|gb|EAW84137.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_f [Homo sapiens] Length = 589 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 146 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 204 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 256 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 307 >gi|119604541|gb|EAW84135.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_e [Homo sapiens] Length = 765 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|212549553|ref|NP_060090.2| interleukin enhancer-binding factor 3 isoform d [Homo sapiens] gi|119604538|gb|EAW84132.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_b [Homo sapiens] gi|261859362|dbj|BAI46203.1| interleukin enhancer binding factor 3, 90kDa [synthetic construct] Length = 898 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576 >gi|114675403|ref|XP_001166543.1| PREDICTED: interleukin enhancer binding factor 3 isoform 9 [Pan troglodytes] Length = 896 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 404 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 462 Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%) Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 A V +W + + K + E + G+ +Y++ +G HD RF + VE Sbjct: 506 ATAEVSTWWNVKQQGP-ILTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVE 562 Query: 195 ISGLAPAQGMDCS 207 + G QG + Sbjct: 563 VDGQK-FQGAGSN 574 >gi|114675419|ref|XP_512380.2| PREDICTED: interleukin enhancer binding factor 3 isoform 12 [Pan troglodytes] Length = 895 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 408 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 466 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 522 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 573 >gi|114675409|ref|XP_001166345.1| PREDICTED: interleukin enhancer-binding factor 3 isoform 5 [Pan troglodytes] Length = 706 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576 >gi|114675405|ref|XP_001166048.1| PREDICTED: interleukin enhancer binding factor 3 isoform 1 [Pan troglodytes] Length = 860 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576 >gi|114675415|ref|XP_001166283.1| PREDICTED: interleukin enhancer binding factor 3 isoform 4 [Pan troglodytes] Length = 698 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576 >gi|114675397|ref|XP_001166471.1| PREDICTED: interleukin enhancer binding factor 3 isoform 7 [Pan troglodytes] gi|114675399|ref|XP_001166503.1| PREDICTED: interleukin enhancer binding factor 3 isoform 8 [Pan troglodytes] gi|114675401|ref|XP_001166614.1| PREDICTED: interleukin enhancer-binding factor 3 isoform 11 [Pan troglodytes] Length = 898 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576 >gi|114675407|ref|XP_001166580.1| PREDICTED: interleukin enhancer binding factor 3 isoform 10 [Pan troglodytes] Length = 777 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576 >gi|114675413|ref|XP_001166155.1| PREDICTED: interleukin enhancer binding factor 3 isoform 2 [Pan troglodytes] Length = 725 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576 >gi|114675417|ref|XP_001166386.1| PREDICTED: interleukin enhancer binding factor 3 isoform 6 [Pan troglodytes] Length = 764 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|5762315|gb|AAD51099.1| nuclear factor associated with dsRNA NFAR-2 [Homo sapiens] Length = 894 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|212549555|ref|NP_001131145.1| interleukin enhancer-binding factor 3 isoform e [Homo sapiens] gi|40674401|gb|AAH64836.1| ILF3 protein [Homo sapiens] gi|158256666|dbj|BAF84306.1| unnamed protein product [Homo sapiens] Length = 706 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576 >gi|5006602|gb|AAD37575.1|AF141870_1 translational control protein 80 [Homo sapiens] Length = 764 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|12746295|gb|AAK07424.1| 90 kDa NFAR protein [Homo sapiens] Length = 702 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|9081982|gb|AAF82686.1| dsRNA binding protein NFAR-1/DRB76 [Homo sapiens] Length = 515 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 224 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 282 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 334 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 385 >gi|9081981|gb|AAF82685.1|AF202445_1 dsRNA binding protein NFAR-2/MPP4 [Homo sapiens] Length = 709 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 224 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 282 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 334 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 385 >gi|4929371|gb|AAD33966.1|AF147209_1 double-stranded RNA-binding nuclear protein DRBP76 [Homo sapiens] Length = 702 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|12746296|gb|AAK07425.1| 110 kDa NFAR protein [Homo sapiens] Length = 894 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|9081983|gb|AAF82687.1| dsRNA binding protein TCP-80 isoform [Homo sapiens] Length = 576 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 224 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 282 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 334 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 385 >gi|5762313|gb|AAD51098.1| nuclear factor associated with dsRNA NFAR-1 [Homo sapiens] Length = 702 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|73986772|ref|XP_854061.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform a isoform 2 [Canis familiaris] Length = 896 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 A + + K + E + G+ +Y++ +G HD RF + VE+ G QG Sbjct: 512 DPTAEQGPILTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQG 568 Query: 204 MDCS 207 + Sbjct: 569 AGSN 572 >gi|73986770|ref|XP_868155.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform a isoform 12 [Canis familiaris] Length = 896 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|73986760|ref|XP_868135.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform a isoform 7 [Canis familiaris] Length = 888 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576 >gi|73986756|ref|XP_868127.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform a isoform 5 [Canis familiaris] Length = 631 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 146 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 204 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 A + + K + E + G+ +Y++ +G HD RF + VE+ G QG Sbjct: 247 DPTAEQGPILTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQG 303 Query: 204 MDCS 207 + Sbjct: 304 AGSN 307 >gi|73986762|ref|XP_868138.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform a isoform 8 [Canis familiaris] Length = 900 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576 >gi|73986758|ref|XP_868130.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform a isoform 6 [Canis familiaris] Length = 873 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 384 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 442 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 498 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 549 >gi|73986766|ref|XP_868145.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform a isoform 10 [Canis familiaris] Length = 845 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576 >gi|73986774|ref|XP_542066.2| PREDICTED: similar to interleukin enhancer binding factor 3 isoform a isoform 1 [Canis familiaris] Length = 900 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576 >gi|73986752|ref|XP_868121.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform b isoform 3 [Canis familiaris] Length = 702 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 A + + K + E + G+ +Y++ +G HD RF + VE+ G QG Sbjct: 512 DPTAEQGPILTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQG 568 Query: 204 MDCS 207 + Sbjct: 569 AGSN 572 >gi|73986764|ref|XP_868141.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform a isoform 9 [Canis familiaris] Length = 874 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 389 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 447 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 A + + K + E + G+ +Y++ +G HD RF + VE+ G QG Sbjct: 490 DPTAEQGPILTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQG 546 Query: 204 MDCS 207 + Sbjct: 547 AGSN 550 >gi|73986768|ref|XP_868151.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform a isoform 11 [Canis familiaris] Length = 876 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 391 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 449 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 A + + K + E + G+ +Y++ +G HD RF + VE+ G QG Sbjct: 492 DPTAEQGPILTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQG 548 Query: 204 MDCS 207 + Sbjct: 549 AGSN 552 >gi|24234753|ref|NP_004507.2| interleukin enhancer-binding factor 3 isoform b [Homo sapiens] gi|9714268|emb|CAC01405.1| double-stranded RNA binding nuclear protein DRBP76 [Homo sapiens] gi|119604537|gb|EAW84131.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_a [Homo sapiens] Length = 702 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|24234750|ref|NP_036350.2| interleukin enhancer-binding factor 3 isoform a [Homo sapiens] gi|62512150|sp|Q12906|ILF3_HUMAN RecName: Full=Interleukin enhancer-binding factor 3; AltName: Full=Double-stranded RNA-binding protein 76; Short=DRBP76; AltName: Full=M-phase phosphoprotein 4; Short=MPP4; AltName: Full=Nuclear factor associated with dsRNA; Short=NFAR; AltName: Full=Nuclear factor of activated T-cells 90 kDa; Short=NF-AT-90; AltName: Full=Translational control protein 80; Short=TCP80 gi|119604540|gb|EAW84134.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_d [Homo sapiens] gi|119604542|gb|EAW84136.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_d [Homo sapiens] Length = 894 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|9714266|emb|CAC01404.1| DRBP76 alpha [Homo sapiens] Length = 564 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 277 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 335 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 391 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 442 >gi|24234756|ref|NP_703194.1| interleukin enhancer-binding factor 3 isoform c [Homo sapiens] gi|9714270|emb|CAC01406.1| double-stranded RNA binding nuclear protein DRBP76 delta [Homo sapiens] Length = 690 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|532315|gb|AAA20994.1| NF90 protein [Homo sapiens] Length = 671 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 412 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 470 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 526 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 577 >gi|1770458|emb|CAA66918.1| M-phase phosphoprotein 4 [Homo sapiens] Length = 611 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|9714272|emb|CAC01407.1| double stranded RNA binding nuclear protein, ILF3 [Homo sapiens] Length = 591 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 108 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 166 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 218 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 269 >gi|149020494|gb|EDL78299.1| interleukin enhancer binding factor 3, isoform CRA_a [Rattus norvegicus] gi|149020495|gb|EDL78300.1| interleukin enhancer binding factor 3, isoform CRA_a [Rattus norvegicus] gi|149020496|gb|EDL78301.1| interleukin enhancer binding factor 3, isoform CRA_a [Rattus norvegicus] Length = 910 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 424 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-STFEASGPSKKTAKLHVAVKVLQDMGLPT 482 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 534 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 585 >gi|16758150|ref|NP_445864.1| interleukin enhancer-binding factor 3 [Rattus norvegicus] gi|6911241|gb|AAF31446.1|AF220102_1 interleukin enhancer binding factor 3 [Rattus norvegicus] Length = 910 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 424 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-STFEASGPSKKTAKLHVAVKVLQDMGLPT 482 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 534 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 585 >gi|62512127|sp|Q9JIL3|ILF3_RAT RecName: Full=Interleukin enhancer-binding factor 3 Length = 897 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-STFEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|149038073|gb|EDL92433.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) (predicted), isoform CRA_b [Rattus norvegicus] Length = 380 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 16/142 (11%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI-EVAGTFVDKYWK 144 ++ L +F D +++ + + A E++ GI ++A F + + Sbjct: 196 EICEAFGLGTF---YEDTIRELDARRADLLAKTPEAVEEPAEDTSGIIKMAIRFDRRAYP 252 Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQG 203 + KT L EW + P Y+ R D F VV ++ + Sbjct: 253 PQIT--------PKTCLLEWCRREKLPQPVYETVQR---PIDRMFCSVVTVAEQKYQSTL 301 Query: 204 MDCSKRAAEQVAAAEVLKREGI 225 D SK+ AEQ AA L+ +G+ Sbjct: 302 WDKSKKLAEQTAAIVCLRSQGL 323 >gi|71009980|ref|XP_758335.1| hypothetical protein UM02188.1 [Ustilago maydis 521] gi|46098077|gb|EAK83310.1| hypothetical protein UM02188.1 [Ustilago maydis 521] Length = 1255 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 32/140 (22%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA--- 94 E +ERLE LGD I+ + L + + EG L+ N + + RE LA Sbjct: 900 EDHERLEQLGDSIVNMSSRLLAYLSYPDVNEGSLTRLSNYPTQNNFLALLFRECGLAARR 959 Query: 95 ----SFIRVSSDL-------RKDVCSFMTSIQ----------------ADVVESLIAALY 127 +R +K C T + AD+ E+ AA++ Sbjct: 960 DELCRELRGQHGHDDDASTTQKQACRKCTRTRQTDEEMAQLPLLIKRDADMFEAYAAAVF 1019 Query: 128 LDGG--IEVAGTFVDKYWKQ 145 L G V ++ ++ Sbjct: 1020 LSHGNDFNVVHNWLCHLFRP 1039 >gi|195487615|ref|XP_002091980.1| GE13936 [Drosophila yakuba] gi|194178081|gb|EDW91692.1| GE13936 [Drosophila yakuba] Length = 1037 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 4/80 (5%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPA 201 K + + + T+L + + P +++ ++G + R F + V SG + A Sbjct: 704 KDKLIDLDDAD-NPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASG-STA 761 Query: 202 QGMDCSKRAAEQVAAAEVLK 221 +G SK+ A++ AA + + Sbjct: 762 RGTGNSKKLAKRNAAQALFE 781 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++T GP H FTV + + + A+ +AA++ ++ Sbjct: 332 QYRLTGERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAASKAIE 378 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 K +T +KV GP H F + G +G K+ +++ AA ++L Sbjct: 593 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKML 644 >gi|321461921|gb|EFX72948.1| hypothetical protein DAPPUDRAFT_253785 [Daphnia pulex] Length = 222 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 8/67 (11%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV------AAAEVL 220 + + + G H FT V I P +G SK+ AE+ AA L Sbjct: 129 KHLKLGIKIETVKEEGSPHLLIFTARVVIGDQ-PFEGTGSSKKQAEEAESKKNEAAQAAL 187 Query: 221 KR-EGIW 226 + EG+W Sbjct: 188 QSTEGVW 194 Score = 38.9 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 SGP H + V ++G D +K+ A+ A +L Sbjct: 14 IAASGPPHARIYVASVTLNGKTY-SAKDTTKKTAKAKVARMIL 55 >gi|291241541|ref|XP_002740673.1| PREDICTED: RNA-specific adenosine deaminase B1-like [Saccoglossus kowalevskii] Length = 618 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 A Y SG H+ +T+ V++ A QG +K + AA L + Sbjct: 169 LLAAYNPGPIIYDTLSESGNGHEKMYTMAVKVGD-AVFQGTGANKHQGKMAAARAALSQL 227 Query: 224 GI 225 + Sbjct: 228 NV 229 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 RSGP H P F + V++ G +G CS + A+ + A + LK Sbjct: 88 VSRSGPPHAPVFVMGVKVDGQ-YFEGKGCSIKQAKHIVAKQALK 130 >gi|90660297|gb|ABD97411.1| double-stranded RNA binding protein [Cowpox virus] Length = 194 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 9/112 (8%) Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK-----TELQEWAHAKFGV 171 + +S+ ++ D E + K + + K D K T + E+ Sbjct: 79 AMADSMADSIIDDASREKSMREDHKSFDD--VIPAKKIIDWKDANPVTIINEYCQITKRD 136 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +++ GP + P F V+I G + SKR A+ AA + + Sbjct: 137 W-SFRIESV-GPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 186 >gi|330417941|ref|NP_001193424.1| interleukin enhancer-binding factor 3 [Bos taurus] Length = 899 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SSFEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576 >gi|296485875|gb|DAA27990.1| interleukin enhancer binding factor 3, 90kDa [Bos taurus] Length = 954 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 470 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SSFEASGPSKKTAKLHVAVKVLQDMGLPT 528 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 580 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 631 >gi|170577089|ref|XP_001893878.1| hypothetical protein Bm1_12040 [Brugia malayi] gi|158599853|gb|EDP37292.1| hypothetical protein Bm1_12040 [Brugia malayi] Length = 381 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 83/225 (36%), Gaps = 26/225 (11%) Query: 18 ANRSLLEKALTHSSI-------------------SHSYQESYERLEFLGDRILGLLISTL 58 ++ +L +ALT SS S+ +E ++L LG+ +L Sbjct: 59 TDKDVLIRALTDSSFYQRADIAEESSNAQPSKQESYEIKEHNKQLIQLGNELLWKSTCAY 118 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L +A E + L + E + +A L + + IR + +V + Sbjct: 119 LRYGLLNAPEELIISLALKLTADEQIANLATYLGINNLIRTAEFPPSNVS------LCNA 172 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++LIAAL + I + V ++ + L+ + ++ G+ E ++ Sbjct: 173 FKALIAALPYERAIALIRNVVMAQLVDLDIEEVFPLAEPLAVLRCFMSSRSGMEIEPRLL 232 Query: 179 FRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +G +P F + + QG + A +AA + L R Sbjct: 233 RSAGEISAEPVFIAGIYANKKLIGQGPGETISIAVDMAAMDALMR 277 >gi|47220271|emb|CAG03305.1| unnamed protein product [Tetraodon nigroviridis] Length = 570 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 ++ EY++T ++GP H+P FT+VV+++G + SK+AA+ A + Sbjct: 393 QYKRGLEYRLTSQTGPVHEPVFTMVVDVNGKTY-EATGPSKKAAKLNVATKA 443 Score = 42.4 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 ++ K + E + + +Y+++ +G H+ F + VE+ G +G + Sbjct: 500 LTKNGKNPVMELNEKRR--SLKYELSEETGGSHEKCFIMEVEVDGQK-FKGRGST 551 >gi|312374421|gb|EFR21981.1| hypothetical protein AND_15950 [Anopheles darlingi] Length = 306 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + PE+++ GP H P F I + +G +K+ A+Q+A E++K Sbjct: 119 ICVQRNFPLPEFELVRSYGPSHAPVFEFECRIRDIVR-RGSHSTKKGAKQIACQEMIK 175 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 17/84 (20%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRS----GPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 T LQE K TP Y+ S GP + F V G A G+ SK+ ++ Sbjct: 13 PVTMLQEICMGKRVPTPTYQYLGESTSPLGP-NVKTFQHKVLTMGQE-AMGLGRSKQDSK 70 Query: 213 QVAAAEVL-----------KREGI 225 AA +++ +REG+ Sbjct: 71 HEAAWQMIRLLLDIPPDEDEREGV 94 >gi|114052563|ref|NP_001039786.1| 39S ribosomal protein L44, mitochondrial precursor [Bos taurus] gi|116256057|sp|Q2KIS2|RM44_BOVIN RecName: Full=39S ribosomal protein L44, mitochondrial; Short=L44mt; Short=MRP-L44; Flags: Precursor gi|86827383|gb|AAI12532.1| Mitochondrial ribosomal protein L44 [Bos taurus] gi|296490187|gb|DAA32300.1| mitochondrial ribosomal protein L44 precursor [Bos taurus] Length = 332 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 65/192 (33%), Gaps = 13/192 (6%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 + + L G ++ + F + + L E VAR L + + Sbjct: 120 KDNQELSEQGTSFSQTCLTQFFEDAFPDLPTEGVKSLVDYLTGEEVVCHVARNLAVEQ-L 178 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155 +S+D ++ ++I AL G E F+ + + F Sbjct: 179 TLSADFPVP-----PAVLRQTFFAVIGALLHSSGPERTSLFIRDFLITQMTGKELFEIWK 233 Query: 156 --DAKTEL-QEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAA 211 + L QE + PE ++T +SG P + V + A+G + A Sbjct: 234 IINPMGLLVQE-LKKRNISVPESRLTRQSGSTTALPVYFVGLYCDKKLIAEGPGETVLVA 292 Query: 212 EQVAAAEVLKRE 223 E+ AA L++ Sbjct: 293 EEEAARVALRKL 304 >gi|34978642|gb|AAQ83572.1| VP11 [Liao ning virus] Length = 198 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 QE+A P Y+ GP H+ FT+V +G+ SK+ A +AA +++ Sbjct: 15 QEYAIKLSESAPSYEDVGFEGPPHNRSFTIVATFRDKKY-EGIGPSKKVARSIAANKII 72 >gi|322695413|gb|EFY87222.1| 60S ribosomal protein L3 [Metarhizium acridum CQMa 102] Length = 392 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 72/259 (27%), Gaps = 60/259 (23%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA---------------- 66 L +AL S + + L FLG I+ + L + Sbjct: 98 LARALITPSADANGSFNNANLAFLGSTIINYHVLEYLVCKWPRLPMAILYEALRAFSGQE 157 Query: 67 ------------------------------KEGELSVRFNSLVSAETCSQVARELDLASF 96 +L R V +E + ++S Sbjct: 158 SLQQVARRWGVEAAAAPGEEVDAGLLQWRADGEQLVNRRWGYVRSEVEKGSSYRRGMSSR 217 Query: 97 IRV-------SSDLRKDVCSFMTSIQADVV----ESLIAALYLDGGIEVAGTFVDKYWKQ 145 + + S + S+Q + ++++ ++Y G E A +FV + Sbjct: 218 VVLDDVFGDALSKPEIAGRQGVDSLQNEAFASFVQAVVGSIYAHCGREAAKSFVTSHILS 277 Query: 146 RALKSGKFRRD--AKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQ 202 R + EL + +P ++ +G P + V + + Sbjct: 278 RHFDPSVLFQFQLPTRELAMLCAREGFESPVARLESETGRLSRTPVYVVGIYSGKEKLGE 337 Query: 203 GMDCSKRAAEQVAAAEVLK 221 G S A + A+ LK Sbjct: 338 GAGPSLDIARRKASMNALK 356 >gi|94486111|gb|ABF25216.1| double-stranded RNA binding protein [Variola virus] gi|94486314|gb|ABF25418.1| double-stranded RNA binding protein [Variola virus] gi|94486517|gb|ABF25620.1| double-stranded RNA binding protein [Variola virus] gi|94486719|gb|ABF25821.1| double-stranded RNA binding protein [Variola virus] gi|94487125|gb|ABF26225.1| double-stranded RNA binding protein [Variola virus] gi|94490151|gb|ABF29236.1| double-stranded RNA binding protein [Variola virus] gi|109724086|gb|ABG43212.1| double-stranded RNA binding protein [Variola virus] gi|109725104|gb|ABG44225.1| double-stranded RNA binding protein [Variola virus] gi|109725309|gb|ABG44429.1| double-stranded RNA binding protein [Variola virus] gi|109725512|gb|ABG44631.1| double-stranded RNA binding protein [Variola virus] gi|109725716|gb|ABG44834.1| double-stranded RNA binding protein [Variola virus] gi|109725919|gb|ABG45036.1| double-stranded RNA binding protein [Variola virus] gi|109726529|gb|ABG45643.1| double-stranded RNA binding protein [Variola virus] Length = 190 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 9/108 (8%) Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK-----TELQEWAHAKFGVTPEY 175 ++ A+ D E + K + + K D K T + E+ + Sbjct: 79 AMADAIIDDVSREKSMREDHKSFDD--VIPAKKIIDWKNANPVTIINEYCQITKRDW-SF 135 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ GP + P F V+I G + SKR A+ AA + + Sbjct: 136 RIESV-GPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182 >gi|213627304|gb|AAI71078.1| hypothetical protein LOC100135229 [Xenopus (Silurana) tropicalis] Length = 698 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 7/86 (8%) Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + K +A+ S + L + +YK+ +SGP H P FT+ V++ G Sbjct: 375 LRKVLDSKAIDSNQ----PMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGT 428 Query: 199 APAQGMDCSKRAAEQVAAAEVLKREG 224 + SK+ A+ A +VL+ G Sbjct: 429 TH-EASGPSKKTAKLHVAVKVLQAMG 453 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 K + E + G+ +Y++ SG HD RF + VE+ +G +K+ Sbjct: 512 KNPVMELNEKRRGL--KYELISESGGSHDKRFVMEVEVDAQK-FRGAGPNKK 560 >gi|169642169|gb|AAI60423.1| LOC100135229 protein [Xenopus (Silurana) tropicalis] Length = 675 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 7/86 (8%) Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + K +A+ S + L + +YK+ +SGP H P FT+ V++ G Sbjct: 375 LRKVLDSKAIDSNQ----PMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGT 428 Query: 199 APAQGMDCSKRAAEQVAAAEVLKREG 224 + SK+ A+ A +VL+ G Sbjct: 429 TH-EASGPSKKTAKLHVAVKVLQAMG 453 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 K + E + G+ +Y++ SG HD RF + VE+ +G +K+ Sbjct: 512 KNPVMELNEKRRGL--KYELISESGGSHDKRFVMEVEVDAQK-FRGAGPNKK 560 >gi|6969701|gb|AAF33913.1| TE3L [Vaccinia virus Tian Tan] Length = 115 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 3/110 (2%) Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 + + +++I + + + D + + + T + E+ Sbjct: 1 MLMLMADAIIDDVSREKSMREDHKSFDDVIPAKKI-IDWKDANPVTIINEYCQITKRDW- 58 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +++ GP + P F V+I G + SKR A+ AA + + Sbjct: 59 SFRIESV-GPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 107 >gi|240142575|ref|YP_002967088.1| hypothetical protein MexAM1_META2p0952 [Methylobacterium extorquens AM1] gi|240012522|gb|ACS43747.1| Hypothetical protein MexAM1_META2p0952 [Methylobacterium extorquens AM1] Length = 690 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI--SGLAPAQ--GMDCSKRAAE 212 A+T L+ + P ++V GP H P FT V + G SK+ AE Sbjct: 610 ARTRLETACRKRKWPMPRFEVKG-DGPSHAPTFTAVARLRAGGRDLVTPACAGRSKKEAE 668 Query: 213 QVAAAEVL 220 +VAA +L Sbjct: 669 RVAARAML 676 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 5/67 (7%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPA- 201 R + + + LQE+ P Y+V GP HD F V + G + Sbjct: 502 PRPAPAAGPELNPRNRLQEYCAGAKHPAPTYEV-SERGPPHDRVFEAVATVRVGGRTISS 560 Query: 202 -QGMDCS 207 S Sbjct: 561 PSASARS 567 >gi|195497348|ref|XP_002096060.1| GE25279 [Drosophila yakuba] gi|194182161|gb|EDW95772.1| GE25279 [Drosophila yakuba] Length = 321 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 76/238 (31%), Gaps = 35/238 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILG 52 +R+G +F S L++A T S + ++ L G I Sbjct: 69 AFSQRLGESFK-VSQLQRAFTEKSFAQREEDRRRQLGIEESDLQMPHNSDLVEKGQHIAH 127 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 + L + + L+S ET + V+ L I + Sbjct: 128 AYVEAFLQHQLPKVPNDGHHAITSFLLSTETLAHVSSHLGTKDLI--------QSTVYPP 179 Query: 113 SI--QADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAH 166 S A + ++I AL GIE A FV + QR L +D L+ Sbjct: 180 SAESLAKSLYAVIGALASSSGIEKAFLFVRDFICTQLNQRDLLEVWTPQDPIQLLENICQ 239 Query: 167 AKFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + E ++ G + + V + + +G + A + AA + L+ Sbjct: 240 ERKLGEAEPRLLADCGK--NTVLGAYQVGIYANRQLLGKGFGEDLKTATETAAIDALQ 295 >gi|326927225|ref|XP_003209793.1| PREDICTED: tRNA-dihydrouridine synthase 2-like, partial [Meleagris gallopavo] Length = 497 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 K L EW + P Y+ R D F VV ++ D SK+ AEQ A Sbjct: 367 PKMYLLEWCRKEKHPQPVYETVQR---PLDKLFCSVVTVADQKYRSALWDKSKKLAEQAA 423 Query: 216 AAEVLKREGI 225 A L+ G+ Sbjct: 424 AIVCLRTLGV 433 >gi|121701443|ref|XP_001268986.1| 60S ribosomal protein L3 [Aspergillus clavatus NRRL 1] gi|119397129|gb|EAW07560.1| 60S ribosomal protein L3 [Aspergillus clavatus NRRL 1] Length = 406 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 38/113 (33%), Gaps = 11/113 (9%) Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKF 169 A V +++ A+YL G A F +++ R L RD L + Sbjct: 262 ATFVRAVMGAIYLHAGRPAAKRFFEQHILSRHLNISDLFNFSQPARD----LTRLCAREN 317 Query: 170 GVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P K+ +G P F V + +G S A AA LK Sbjct: 318 FEPPVAKIISETGRKSRHPVFVVGIFSGQDKLGEGAGASLLEARSRAAVAALK 370 Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 3/90 (3%) Query: 5 RYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + L R+ Y + L L ++L +S S + E L LG +L S L Sbjct: 84 KLAALHARL-YLPSRLPLETLARSLVDASADPSPDFNNESLATLGHDLLTHYASEHLVCT 142 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELD 92 + + + V +T + +ARE Sbjct: 143 YPRLPLTVIFAAMYAYVGPKTLAAMAREWG 172 >gi|33875035|gb|AAH10169.1| STAU1 protein [Homo sapiens] Length = 196 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 163 EWAHAKFGVT-----PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 E A + P +V SGP H F V + G +G SK+ +++ AA Sbjct: 110 EIALKRNLPVNFESFPLKQVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAI 168 Query: 218 EVLKRE 223 VL+ Sbjct: 169 AVLEEL 174 >gi|195116871|ref|XP_002002975.1| GI17670 [Drosophila mojavensis] gi|193913550|gb|EDW12417.1| GI17670 [Drosophila mojavensis] Length = 96 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 39/82 (47%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +EG L++ ++V + C+ +A++L L F+ + L + E Sbjct: 1 MFPEQEEGGLAMYSAAIVQNQHCALLAKKLQLEEFMLYAQGLDMCHELELRHAMVSCFED 60 Query: 122 LIAALYLDGGIEVAGTFVDKYW 143 L+ A+ LDGGI VA ++W Sbjct: 61 LMGAILLDGGIMVADEVFTRFW 82 >gi|54020805|ref|NP_001005648.1| interleukin enhancer-binding factor 3 [Xenopus (Silurana) tropicalis] gi|82183774|sp|Q6GL57|ILF3_XENTR RecName: Full=Interleukin enhancer-binding factor 3 gi|49257941|gb|AAH74653.1| interleukin enhancer binding factor 3, 90kDa [Xenopus (Silurana) tropicalis] Length = 698 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ + SK+ A+ A +VL+ G+ T Sbjct: 412 QLKPGLQYKLISQTGPVHAPIFTMSVEVDEKT-FEASGPSKKTAKLHVAVKVLQDMGLPT 470 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G+ QG + Sbjct: 517 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGVK-FQGSGSN 568 >gi|295659761|ref|XP_002790438.1| 54S ribosomal protein L3 [Paracoccidioides brasiliensis Pb01] gi|226281615|gb|EEH37181.1| 54S ribosomal protein L3 [Paracoccidioides brasiliensis Pb01] Length = 429 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 84/266 (31%), Gaps = 60/266 (22%) Query: 1 MSALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 +++ + + L R+ L L + L S+ S Q + + L LG +L S Sbjct: 115 LNSPKLAALHARLSL-PRRLPLQTLARTLVDESVDPSPQFNNKSLSILGGDLLTYYTSEH 173 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL------------------------- 93 L + + L S + A+ + + RE L Sbjct: 174 LISTYPRLPIKVLWAAMYSYIGAKPLAAMTREWGLECVADPGAEVDPGFLQFKRLPPDTE 233 Query: 94 ------ASFIRVSSDLRKD--------VCSFMTSIQ---------------ADVVESLIA 124 +F+R + +L K +F S A+ V +++ Sbjct: 234 VKTNANGTFLRPNGNLSKRSTSARIIYGDAFGESALPYPVQYEGVTPNRACANFVRAVMG 293 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL G A F +++ R L R +L + + P K+ +G Sbjct: 294 AVYLHAGRPAAKQFFKEHFMSRYLNMASLFSFRQPTRDLSKLCRREGFEDPVAKILSETG 353 Query: 183 P-DHDPRFTVVVEISGLAPAQGMDCS 207 + P F V + +G S Sbjct: 354 RLSNRPVFNVGIFSGPDKLGEGAGGS 379 >gi|189193171|ref|XP_001932924.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187978488|gb|EDU45114.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 184 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 6/144 (4%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH---FDSA 66 ++++GY F N++ +A+ H+ + L +G + ++ + Sbjct: 19 QQKLGYTFMNKANAFRAIKHAKNPFGPGFVNDSLAVIGSVKMANVLCNWWSLRPDFYGQE 78 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLI 123 E ++ + + + +AR L L S +R F + A++ ++++ Sbjct: 79 SAAEWTMVTHDKLGLTALANLARSLSLDSCLRNPKMFTFADLRFPLMVEKTLANMTKAIM 138 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA 147 A++LDG E + K + Sbjct: 139 GAVFLDGAEEAFVGVMKKLQFDQH 162 >gi|57208665|emb|CAI42821.1| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens] Length = 199 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 163 EWAHAKFGVT-----PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 E A + P +V SGP H F V + G +G SK+ +++ AA Sbjct: 110 EIALKRNLPVNFESFPLKQVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAI 168 Query: 218 EVLKRE 223 VL+ Sbjct: 169 AVLEEL 174 >gi|168054513|ref|XP_001779675.1| predicted protein [Physcomitrella patens subsp. patens] gi|162668873|gb|EDQ55471.1| predicted protein [Physcomitrella patens subsp. patens] Length = 461 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 5/128 (3%) Query: 21 SLLEKALTHSSISHSYQESY-----ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 +LL A H + + Y RL FLG+ +L L ++ L+ F G L R Sbjct: 93 TLLYLAFQHPDSVRARKAPYVRKAHSRLAFLGEYVLELAMAELVLQMFPRELVGSLRERV 152 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 L + + + + I D + S V +++AA+YL G+ Sbjct: 153 FGLTNKKVLPDWLKNASMDRLIYPDGDWGEIKWSDKLKPCKSVFHAIVAAIYLTLGMPEV 212 Query: 136 GTFVDKYW 143 + + + Sbjct: 213 YRVLFEAF 220 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 22/163 (13%) Query: 9 LEKRIGY------------AFANRSL---LEKALTHSSI--SHSYQESYERLEFLGDRIL 51 +E+ +GY + N L L+ H S + + ERLE+LG ++ Sbjct: 297 VERTLGYPQPVRDDNPVLESARNIELQLGLQLCFLHPSAHKAEHPRFCNERLEYLGSKVQ 356 Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 ++++ + A + R L+ C R L L I S D R+++ Sbjct: 357 DVIMAEKILMKHLDAPGAWIEERHRRLLLNRLCGLYLRNLKLHHHIVYS-DERRELYVKS 415 Query: 112 TSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 ++ V +++ Y G + + L+S Sbjct: 416 RKLRNFSTTGVSQAIHGLAYTVYGRPDVRRIMFRVMNFEQLES 458 >gi|134105965|gb|ABO60959.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Macaca mulatta] Length = 554 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 6/59 (10%) Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 A K T Y+ + GP+ F +I G SK+ A+Q+AA L Sbjct: 108 IAQKKRL-TVNYEQCTSGVHGPEG---FHYKCKIGDKEYGIGTGSSKQEAKQLAAKLAL 162 Score = 36.6 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 EL ++ + Y+ +GP HD RFT V + S Sbjct: 13 ELNKYRQKQGISL-SYQELPNTGPPHDRRFTFQVVTDRRTFPEAEGRS 59 >gi|195568430|ref|XP_002102219.1| GD19616 [Drosophila simulans] gi|194198146|gb|EDX11722.1| GD19616 [Drosophila simulans] Length = 321 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 78/235 (33%), Gaps = 35/235 (14%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55 KR+G +F S L++A T S + ++ L G I + Sbjct: 72 KRLGESFE-LSELQRAFTEKSFAEREEDRRRQLGIEESDLQMPHNSDLVEKGQHIGRAYV 130 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI- 114 L + L + L+S ET + V+ L I + S Sbjct: 131 EAFLQHQLPKVPNEGLQAIASFLLSTETLAHVSSHLGTKDLI--------QSTEYPPSAE 182 Query: 115 -QADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKF 169 A + ++I AL GIE A FV + Q+ L ++ L++ + Sbjct: 183 SLAKSLHAVIGALASSSGIERAFLFVRDFICTQLNQKDLLDVWTPQEPIQLLEKICQERK 242 Query: 170 GVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 E ++ G + + V + + +G + A + AA + L+ Sbjct: 243 LGEVEPRLLGDCGK--NTVLAAYQVGIYANRQLLGKGFGEDVKTATETAALDALQ 295 >gi|145301625|ref|NP_001077417.1| interferon-induced, double-stranded RNA-activated protein kinase [Macaca mulatta] gi|134105963|gb|ABO60958.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Macaca mulatta] Length = 554 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 6/59 (10%) Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 A K T Y+ + GP+ F +I G SK+ A+Q+AA L Sbjct: 108 IAQKKRL-TVNYEQCTSGVHGPEG---FHYKCKIGDKEYGIGTGSSKQEAKQLAAKLAL 162 Score = 36.6 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 EL ++ + Y+ +GP HD RFT V + S Sbjct: 13 ELNKYRQKQGISL-SYQELPNTGPPHDRRFTFQVVTDRRTFPEAEGRS 59 >gi|13236216|gb|AAK16103.1|AF291877_1 RNA adenosine deaminase 1 [Mus musculus] Length = 660 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+ Sbjct: 48 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 106 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 107 AAEEAMKAL 115 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 162 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 220 Query: 221 K 221 + Sbjct: 221 R 221 >gi|148683240|gb|EDL15187.1| adenosine deaminase, RNA-specific, isoform CRA_c [Mus musculus] Length = 700 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+ Sbjct: 88 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 146 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 147 AAEEAMKAL 155 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 202 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 260 Query: 221 K 221 + Sbjct: 261 R 261 Score = 36.6 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 16/33 (48%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 RF V I+G SK+ A+Q AA + + Sbjct: 9 RFKFQVVINGREFPPAEAGSKKVAKQDAAVKAM 41 >gi|325115276|emb|CBZ50831.1| putative helicase [Neospora caninum Liverpool] Length = 4082 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F LL A I E+YERLE+LGD ++G L++ LF+ F + +EG LS N Sbjct: 3868 FHLPGLLTVARNRDVILPGLAETYERLEYLGDSVIGFLVTDWLFSRFPAFREGPLSEAKN 3927 Query: 77 SLVSAETCSQ 86 L+S + ++ Sbjct: 3928 VLLSNQFFAR 3937 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 7/91 (7%) Query: 47 GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----RVSSD 102 G L +L F EG LS ++ + R L + + V Sbjct: 3319 GGSPLSVLTQERADAFFGGVGEGTLSRLRQHYIANDYLRFAMRRFRLQAHLVAFPFVGHK 3378 Query: 103 LRKDVCSFMT---SIQADVVESLIAALYLDG 130 +QADVVE+LI A+YL Sbjct: 3379 KSLADLREQPVSEKMQADVVEALIGAIYLAN 3409 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Query: 39 SYERLEFLGDRILGLLISTLLFNH-FDSAKEG 69 +RLE LGD +L ++ST LF H A Sbjct: 3175 HSQRLELLGDAVLKFIVSTYLFFHVHGDAPPP 3206 >gi|166157977|ref|NP_001107398.1| spermatid perinuclear RNA binding protein [Xenopus (Silurana) tropicalis] gi|163916317|gb|AAI57348.1| LOC100135229 protein [Xenopus (Silurana) tropicalis] Length = 698 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 7/86 (8%) Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + K + + S + L + +YK+ +SGP H P FT+ V++ G Sbjct: 375 LRKVLDSKVIDSNQ----PMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGT 428 Query: 199 APAQGMDCSKRAAEQVAAAEVLKREG 224 + SK+ A+ A +VL+ G Sbjct: 429 TH-EASGPSKKTAKLHVAVKVLQAMG 453 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 K + E + G+ +Y++ SG HD RF + VE+ +G +K+ Sbjct: 512 KNPVMELNEKRRGL--KYELISESGGSHDKRFVMEVEVDAQK-FRGAGPNKK 560 >gi|208690887|gb|ACI31219.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Macaca mulatta] Length = 554 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 6/59 (10%) Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 A K T Y+ + GP+ F +I G SK+ A+Q+AA L Sbjct: 108 IAQKKRL-TVNYEQCTSGVHGPEG---FHYKCKIGDKEYGIGTGSSKQEAKQLAAKLAL 162 Score = 36.6 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 EL ++ + Y+ +GP HD RFT V + S Sbjct: 13 ELNKYRQKQGISL-SYQELPNTGPPHDRRFTFQVVTDRRTFPEAEGRS 59 >gi|62421274|gb|AAX82394.1| ribonuclease III [Orange-spotted grouper iridovirus] Length = 265 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 74/232 (31%), Gaps = 41/232 (17%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG-------E 70 N + TH S +H +YE E LGD I+ ++ F Sbjct: 37 KNTQVFHSVFTH-SKAHPVN-NYEWYEKLGDAIIASVMPQYYMERFPKLAHDPSAAVART 94 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQADVVESLIAALYLD 129 +S + S T S +A+++ ++ + D E+++ A+ + Sbjct: 95 VSQLAITYQSGTTMSTIAQKMGFLKWVVAHRDGAAPASYKEQQRLLEDTFEAMVGAISIT 154 Query: 130 ---------GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT----PEY- 175 G F+ + ++ D K+ L+E V EY Sbjct: 155 MDDATGVKCSGHIACYRFLKYAYGLINMRLDGLI-DNKSMLKELIDMHSSVLDSFTFEYT 213 Query: 176 ----KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +T H V ++ L SKR E+V A +VL + Sbjct: 214 NNVMTLTV----AHGKYMVSEVNVNNL--------SKRELEKVLAGKVLAQL 253 >gi|148693237|gb|EDL25184.1| interleukin enhancer binding factor 3, isoform CRA_a [Mus musculus] Length = 553 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 435 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SNFEASGPSKKTAKLHVAVKVLQDMGLPT 493 >gi|148693238|gb|EDL25185.1| interleukin enhancer binding factor 3, isoform CRA_b [Mus musculus] Length = 909 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 422 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SNFEASGPSKKTAKLHVAVKVLQDMGLPT 480 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 532 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 583 >gi|148693240|gb|EDL25187.1| interleukin enhancer binding factor 3, isoform CRA_d [Mus musculus] Length = 919 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 435 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SNFEASGPSKKTAKLHVAVKVLQDMGLPT 493 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 545 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 596 >gi|148693239|gb|EDL25186.1| interleukin enhancer binding factor 3, isoform CRA_c [Mus musculus] Length = 727 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 435 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SNFEASGPSKKTAKLHVAVKVLQDMGLPT 493 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 545 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 596 >gi|111607436|ref|NP_001036174.1| interleukin enhancer-binding factor 3 isoform 4 [Mus musculus] gi|71044413|gb|AAZ20652.1| nuclear factor 90 [Mus musculus] Length = 703 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SNFEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|111607434|ref|NP_001036173.1| interleukin enhancer-binding factor 3 isoform 3 [Mus musculus] gi|28704095|gb|AAH47272.1| Interleukin enhancer binding factor 3 [Mus musculus] gi|71044411|gb|AAZ20651.1| nuclear factor 90 [Mus musculus] Length = 716 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 424 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SNFEASGPSKKTAKLHVAVKVLQDMGLPT 482 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 534 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 585 >gi|111607430|ref|NP_034691.2| interleukin enhancer-binding factor 3 isoform 1 [Mus musculus] gi|27764511|gb|AAO23054.1| interleukin enhancer binding factor 3 [Mus musculus] gi|148693241|gb|EDL25188.1| interleukin enhancer binding factor 3, isoform CRA_e [Mus musculus] Length = 911 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 424 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SNFEASGPSKKTAKLHVAVKVLQDMGLPT 482 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 534 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 585 >gi|3834675|gb|AAC71052.1| interleukin enhancer binding factor 3 [Mus musculus] Length = 911 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 424 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SNFEASGPSKKTAKLHVAVKVLQDMGLPT 482 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 534 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 585 >gi|62859019|ref|NP_001016230.1| dihydrouridine synthase 2-like, SMM1 homolog [Xenopus (Silurana) tropicalis] gi|89268176|emb|CAJ82133.1| similar to dus2l (dihydrouridine synthase 2-like) [Xenopus (Silurana) tropicalis] Length = 495 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 K L EW + P Y R D F VV++ + A D SK+ AEQ A Sbjct: 367 PKMLLLEWCRKRKLPQPVYHTVQR---PVDKFFQSVVKVDEMQYASTLWDKSKKLAEQSA 423 Query: 216 AAEVLKREGI 225 A L G+ Sbjct: 424 AIVCLHTLGL 433 >gi|111607432|ref|NP_001036172.1| interleukin enhancer-binding factor 3 isoform 2 [Mus musculus] gi|62512154|sp|Q9Z1X4|ILF3_MOUSE RecName: Full=Interleukin enhancer-binding factor 3 gi|21070213|gb|AAM34210.1|AF506968_1 interleukin enhancer binding factor 3 [Mus musculus] gi|26339136|dbj|BAC33239.1| unnamed protein product [Mus musculus] gi|27764513|gb|AAO23055.1| interleukin enhancer binding factor 3 [Mus musculus] Length = 898 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 411 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SNFEASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572 >gi|26346424|dbj|BAC36863.1| unnamed protein product [Mus musculus] Length = 528 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 424 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SNFEASGPSKKTAKLHVAVKVLQDMGLPT 482 >gi|13236212|gb|AAK16101.1|AF291875_1 RNA adenosine deaminase 1 [Mus musculus] Length = 634 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+ Sbjct: 48 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 106 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 107 AAEEAMKAL 115 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 162 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 220 Query: 221 K 221 + Sbjct: 221 R 221 >gi|148683241|gb|EDL15188.1| adenosine deaminase, RNA-specific, isoform CRA_d [Mus musculus] Length = 674 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L E H K G + E+++ + GP HDP+F V + SK+ A+Q+ Sbjct: 88 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 146 Query: 215 AAAEVLKRE 223 AA E +K Sbjct: 147 AAEEAMKAL 155 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + E+K+ +SGP H+P+F ++ G SK+ +Q AA L Sbjct: 202 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 260 Query: 221 K 221 + Sbjct: 261 R 261 Score = 36.6 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 16/33 (48%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 RF V I+G SK+ A+Q AA + + Sbjct: 9 RFKFQVVINGREFPPAEAGSKKVAKQDAAVKAM 41 >gi|118096265|ref|XP_414079.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 518 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 K L EW + P Y+ R D F VV ++ D SK+ AEQ A Sbjct: 395 PKMYLLEWCRKEKHPQPVYETVQR---PLDRLFCSVVTVADQKYRSALWDKSKKLAEQAA 451 Query: 216 AAEVLKREGI 225 A L+ G+ Sbjct: 452 AIVCLRTLGV 461 >gi|5830605|emb|CAB54644.1| C3L protein [Variola minor virus] gi|94484303|gb|ABF23417.1| double-stranded RNA binding protein [Variola virus] Length = 192 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 9/108 (8%) Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK-----TELQEWAHAKFGVTPEY 175 S+ A+ D E + K + + K D K T + E+ + Sbjct: 81 SMADAIIDDVSREKSMREDHKSFDD--VIPAKKIIDWKNANPVTIINEYCQITKRDW-SF 137 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ GP + P F V+I G + SKR A+ AA + + Sbjct: 138 RIESV-GPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 184 >gi|226481549|emb|CAX73672.1| Protein DGCR8 (DiGeorge syndrome critical region 8) [Schistosoma japonicum] Length = 369 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+ P Y+ T D +P + + V I+G G SK+ A AA + L Sbjct: 84 LHEYCQNVIRHPPTYQTTVLE-NDKNP-YQMTVFINGTPYGTGTGQSKKCARLEAARKAL 141 Query: 221 K 221 + Sbjct: 142 E 142 >gi|159164237|pdb|2DMY|A Chain A, Solution Structure Of Dsrm Domain In Spermatid Perinuclear Rna-Bind Protein Length = 97 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 8/80 (10%) Query: 150 SGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 SG+ D+K L + +YK+ +SGP H P FT+ V++ G + Sbjct: 6 SGRKILDSKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EAS 62 Query: 205 DCSKRAAEQVAAAEVLKREG 224 SK+ A+ A +VL+ G Sbjct: 63 GPSKKTAKLHVAVKVLQAMG 82 >gi|117558547|gb|AAI27296.1| LOC548984 protein [Xenopus (Silurana) tropicalis] Length = 451 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 K L EW + P Y R D F VV++ + A D SK+ AEQ A Sbjct: 323 PKMLLLEWCRKRKLPQPVYHTVQR---PVDKFFQSVVKVDEMQYASTLWDKSKKLAEQSA 379 Query: 216 AAEVLKREGI 225 A L G+ Sbjct: 380 AIVCLHTLGL 389 >gi|158323839|gb|ABW34424.1| RNase3 class I protein [Sweet potato chlorotic stunt virus] Length = 220 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 48/218 (22%), Positives = 77/218 (35%), Gaps = 37/218 (16%) Query: 29 HS--SISHS--YQESYERLEFLGDRILGLLISTLLFNHFD-SAKEGELSVRFNSLVSAET 83 H SI HS +R E LGD + ++ +L + F +A LS+ +S Sbjct: 13 HRLDSIVHSICTSGDRDRYEILGDWAVASYVTRMLTDLFKHNADAESLSLLRAHNISNVM 72 Query: 84 CSQVARELDL-ASFIRVSSDLRKDVCSF-----------MTSIQADVVESLIAALYLDGG 131 ++V E L F + + +C A+ E ++ L + Sbjct: 73 FAKVMVESKLFEDFSLWLTPDQMQLCRKTFAGGRSLYEVNVKFLANYFERIVGWLVVHDC 132 Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT----PEYKVTFRSGPDHDP 187 E F+D + K S ++ A++ L+EWA EY V Sbjct: 133 SESVEKFLDLFLKPHM--SFHIKKPARSILEEWAMKNNKRLDIHTGEYNVNK-------- 182 Query: 188 RFTVVVEISGLAPAQGMDC-SKRAAEQVA---AAEVLK 221 V V + G ++ D SK+ A A A E L Sbjct: 183 --VVYVLVDGQEVSRASDLISKKRAISKAVSFAVEALN 218 >gi|311252821|ref|XP_003125284.1| PREDICTED: interferon-induced, double-stranded RNA-activated protein kinase-like [Sus scrofa] Length = 242 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 20/44 (45%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G D +F +I G+ +K+ A+Q+AA + ++ Sbjct: 122 EPGEDGPEKFHYKCKIGRKVYGSGVGSTKQEAKQLAAKQAYEKL 165 Score = 44.7 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 18/42 (42%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K V +Y+ ++GP H+ RFT V I + S Sbjct: 18 QQKNDVILKYRELCKTGPAHNLRFTYQVVIDEKEFPKAEGRS 59 >gi|327396952|dbj|BAK14318.1| RNase III-like ribonuclease [Red sea bream iridovirus] Length = 265 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 78/233 (33%), Gaps = 43/233 (18%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG-------E 70 N + TH S +H +YE E LGD I+ ++ F Sbjct: 37 KNTQVFHSVFTH-SKAHPVN-NYEWYEKLGDAIIASVMPQYYMERFPKLAHDPSATVART 94 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQADVVESLIAALYLD 129 +S + S T S +A+++ ++ + D E+++ A+ + Sbjct: 95 VSQLAITYQSGTTMSTIAQKMGFLKWVVAHRDGAAPASYKEQQRLLEDTFEAMVGAISIT 154 Query: 130 ---------GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT----PEY- 175 G F+ + ++ D K+ L+E V EY Sbjct: 155 MDDATGVKCSGHIACYRFLKYAYGLINMRLDGLI-DNKSMLKELIDMHSSVLDSFTFEYT 213 Query: 176 ----KVTFRSGPDHDPRFTV-VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +T G ++TV V ++ L SKR E+V A +VL + Sbjct: 214 NNVMTLTVAHG-----KYTVSEVNVNNL--------SKRELEKVLAGKVLAQL 253 >gi|154296416|ref|XP_001548639.1| predicted protein [Botryotinia fuckeliana B05.10] gi|150843395|gb|EDN18588.1| predicted protein [Botryotinia fuckeliana B05.10] Length = 319 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 14/160 (8%) Query: 9 LEKRIGYAFANRSLLEKAL-THSSISHSYQES-------YERLEFLGDRILGLLIST-LL 59 L+ + Y F N +LE+AL T + +S E L LG+ + L++ Sbjct: 160 LQSFLSYTFNNPDILEEALETPKNGVTCVGKSMRICLDGNEGLAKLGETAIRLVMREQFY 219 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS-----SDLRKDVCSFMTSI 114 + ++ R S VS +A + I +S +++D T I Sbjct: 220 LFSIPEVQASQILNRILSRVSLSAYPTIASCIRPQPSIPMSFRNIIELVKEDTREDNTRI 279 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR 154 + V ++I A+YLDGGIE A ++ L G R Sbjct: 280 ISRAVRAVIGAVYLDGGIESAKKIMENLQMGIKLPPGSKR 319 >gi|111184243|gb|ABH08163.1| HSPV060 [Horsepox virus] Length = 190 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 103 DVIPAKKIIDWKDANPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182 >gi|94488139|gb|ABF27234.1| double-stranded RNA binding protein [Variola virus] gi|94488339|gb|ABF27433.1| double-stranded RNA binding protein [Variola virus] gi|109726123|gb|ABG45239.1| double-stranded RNA binding protein [Variola virus] Length = 192 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 105 DVIPAKKIIDWKNANPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 162 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 163 KADGKSKRDAKNNAAKLAVDKL 184 >gi|37551503|gb|AAQ93155.1| double-stranded RNA binding protein [Vaccinia virus] Length = 190 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 103 DVIPAKKIIDWKDANPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182 >gi|88900676|gb|ABD57588.1| VACV056 [Vaccinia virus] Length = 190 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 103 DVIPAKKIIDWKDANPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182 >gi|30519433|emb|CAD90608.1| F3L protein [Cowpox virus] Length = 190 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 103 DVIPAKKIIDWKDANPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182 >gi|544827|gb|AAB29618.1| E3L product [variola virus VAR, India-1967, Peptide, 190 aa] Length = 190 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 103 DVIPAKKIIDWKNAMPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182 >gi|18640289|ref|NP_570445.1| CMLV055 [Camelpox virus] gi|18482965|gb|AAL73762.1|AF438165_52 putative dsRNA-binding PKR inhibitor [Camelpox virus M-96] gi|19717992|gb|AAG37517.1| CMP55L [Camelpox virus CMS] Length = 190 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 103 DVIPAKKIIDWKNTNPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182 >gi|2772689|gb|AAB96428.1| dsRNA dependent PK inhibitor [Vaccinia virus] gi|38348925|gb|AAR17901.1| double-stranded RNA binding protein [Vaccinia virus] gi|47088378|gb|AAT10448.1| double-stranded RNA binding protein [Vaccinia virus] gi|90819719|gb|ABD98529.1| VACV-DUKE-067 [Vaccinia virus] gi|160857941|emb|CAM58229.1| double-stranded RNA binding protein [Vaccinia virus Ankara] Length = 190 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 103 DVIPAKKIIDWKDANPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182 >gi|438962|gb|AAA60792.1| homolog of vaccinia virus CDS E3L (interferon resistance factor); putative [Variola major virus] gi|94483894|gb|ABF23010.1| double-stranded RNA binding protein [Variola virus] gi|94484097|gb|ABF23212.1| double-stranded RNA binding protein [Variola virus] gi|94484507|gb|ABF23620.1| double-stranded RNA binding protein [Variola virus] gi|94484704|gb|ABF23816.1| double-stranded RNA binding protein [Variola virus] gi|94484902|gb|ABF24013.1| double-stranded RNA binding protein [Variola virus] gi|94485100|gb|ABF24210.1| double-stranded RNA binding protein [Variola virus] gi|94485302|gb|ABF24411.1| double-stranded RNA binding protein [Variola virus] gi|94485505|gb|ABF24613.1| double-stranded RNA binding protein [Variola virus] gi|94485910|gb|ABF25016.1| double-stranded RNA binding protein [Variola virus] gi|94486922|gb|ABF26023.1| double-stranded RNA binding protein [Variola virus] gi|94487328|gb|ABF26427.1| double-stranded RNA binding protein [Variola virus] gi|94487531|gb|ABF26629.1| double-stranded RNA binding protein [Variola virus] gi|94487732|gb|ABF26829.1| double-stranded RNA binding protein [Variola virus] gi|94488539|gb|ABF27632.1| double-stranded RNA binding protein [Variola virus] gi|94488740|gb|ABF27832.1| double-stranded RNA binding protein [Variola virus] gi|94488941|gb|ABF28032.1| double-stranded RNA binding protein [Variola virus] gi|94489141|gb|ABF28231.1| double-stranded RNA binding protein [Variola virus] gi|94489340|gb|ABF28429.1| double-stranded RNA binding protein [Variola virus] gi|94489543|gb|ABF28631.1| double-stranded RNA binding protein [Variola virus] gi|94489742|gb|ABF28829.1| double-stranded RNA binding protein [Variola virus] gi|94489947|gb|ABF29033.1| double-stranded RNA binding protein [Variola virus] gi|109724290|gb|ABG43415.1| double-stranded RNA binding protein [Variola virus] gi|109724492|gb|ABG43616.1| double-stranded RNA binding protein [Variola virus] gi|109724697|gb|ABG43820.1| double-stranded RNA binding protein [Variola virus] gi|109724901|gb|ABG44023.1| double-stranded RNA binding protein [Variola virus] gi|109726326|gb|ABG45441.1| double-stranded RNA binding protein [Variola virus] Length = 192 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 105 DVIPAKKIIDWKNANPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 162 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 163 KADGKSKRDAKNNAAKLAVDKL 184 >gi|137621|sp|P21081|VE03_VACCC RecName: Full=Protein E3; AltName: Full=p25 gi|335388|gb|AAA48040.1| putative E3L [Vaccinia virus Copenhagen] Length = 190 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 103 DVIPAKKIIDWKDANPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182 >gi|9627565|ref|NP_042088.1| double-strand RNA-binding protein [Variola virus] gi|465071|sp|P33863|VE03_VAR67 RecName: Full=Protein E3 gi|297225|emb|CAA48985.1| E3L [Variola virus] gi|745160|prf||2015436AY E3L gene Length = 190 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 103 DVIPAKKIIDWKNANPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182 >gi|327267093|ref|XP_003218337.1| PREDICTED: 39S ribosomal protein L44, mitochondrial-like [Anolis carolinensis] Length = 321 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 66/223 (29%), Gaps = 29/223 (13%) Query: 5 RYSTLEKRIGYAFANRSLLEKALT-HSSISHSYQ----------------ESYERLEFLG 47 RI F+ LL+ A H I H + L G Sbjct: 60 EIQAFSHRIHEKFS-LDLLKTAFVNHCYIKHEESRRQVLGLEKEAIALNLKDNHELYLQG 118 Query: 48 DRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 + L + + + N L S E S +A+ L L + Sbjct: 119 NSFSHLYLRQCFEEAYPKMPPAGIEALVNFLTSEELVSYLAQNLSLQDLTLCAEFPVPT- 177 Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQE 163 ++ ++I AL G + FV ++ + + F + L E Sbjct: 178 -----NVLQQTFFAVIGALLQSSGSQRTKLFVRDFFIPQLIGKELFEMWNVINPMGLLME 232 Query: 164 WAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMD 205 + PE ++T +SG P + V + + A+G Sbjct: 233 ELTKRNISAPEPRLTRQSGASTALPLYFVGLYCNKKLLAEGTG 275 >gi|317018626|gb|ADU86891.1| E3L [Vaccinia virus] Length = 179 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 97 DVIPAKKIIDWKSANPVTIINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 154 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 155 KADGKSKRDAKNNAAKLAVDKL 176 >gi|156401537|ref|XP_001639347.1| predicted protein [Nematostella vectensis] gi|156226475|gb|EDO47284.1| predicted protein [Nematostella vectensis] Length = 880 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 157 AKTELQEWAHAKFGVTPEY---KVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAE 212 K +LQE+ P Y KV + D +F + + G + C +K+ +E Sbjct: 810 YKNQLQEYCDKNKKGAPIYDSKKVELQV----DGKFVCDLLVDGFT-FRAKGCQTKKGSE 864 Query: 213 QVAAAEVLKREGIW 226 Q AA L+R G+ Sbjct: 865 QSAARIALQRFGVL 878 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 4/78 (5%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K LQE+A K P Y S + VV + G+ Sbjct: 575 IPGDDNFISFKNSLQEFAQKKGIPVPRY----FSKKAQIGMMSTVVISDHKFHSTGLHKD 630 Query: 208 KRAAEQVAAAEVLKREGI 225 K+ +EQ AA LK+ GI Sbjct: 631 KKQSEQNAAWFALKKLGI 648 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 16/70 (22%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFR------SGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 K++L E+ P+Y+ + + + V + +K+A Sbjct: 688 YKSQLNEFCQKFHLAIPQYRTQREARGYVCTMLYNKKVYHSTVPL----------KNKKA 737 Query: 211 AEQVAAAEVL 220 AEQ A VL Sbjct: 738 AEQNVAQYVL 747 >gi|77434241|gb|ABA82144.1| double-stranded RNA-binding protein [Vaccinia virus] gi|77434344|gb|ABA82147.1| double-stranded RNA-binding protein [Vaccinia virus] Length = 179 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 97 DVIPAKKIIDWKDANPVTIINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 154 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 155 KADGKSKRDAKNNAAKLAVDKL 176 >gi|91084595|ref|XP_974201.1| PREDICTED: similar to 39S ribosomal protein L44 [Tribolium castaneum] gi|270008900|gb|EFA05348.1| hypothetical protein TcasGA2_TC015512 [Tribolium castaneum] Length = 294 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 82/236 (34%), Gaps = 41/236 (17%) Query: 11 KRIGYAFANRSLLEKALTHSSI-SHSYQESYER-LEF-----------LGDRILGLLIST 57 KR+ F +R +L++ALTH S + ++ E+ LEF G ++ + Sbjct: 73 KRLREEF-DRKVLKQALTHRSYVTREEDKAKEKGLEFETIECNHQLIKQGGALISQCVRN 131 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L + L ++ + + V L L ++ + ++ AD Sbjct: 132 ELGGKYPKDVVEALHGHLTTV---DMLAHVGLHLGLKDIVQTAEFPVENE------TLAD 182 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRA-------LKSGKFRRDA-KTEL--QEWAHA 167 ++++AAL + G E FV + + + + D ++ L QE Sbjct: 183 TFKAVVAALEVSQGQERVQLFVKDFLLSQLNGKDVYDVWAPDSPLDYLRSLLPKQEIESR 242 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + + V + + G S A+ AA + ++R Sbjct: 243 LCNKSAVNTILA--------NYQVGLYCNKKLLGLGWGESVEIAKDTAALDAIQRL 290 >gi|55140600|gb|AAV41839.1| putative double-stranded RNA binding protein [Cantagalo virus] Length = 190 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 103 DVIPAKKIIDWKDANPVTIINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182 >gi|297821192|ref|XP_002878479.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4 [Arabidopsis lyrata subsp. lyrata] gi|297324317|gb|EFH54738.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4 [Arabidopsis lyrata subsp. lyrata] Length = 343 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 A + + P Y T SGP H P F VE +G +K+ AE AA Sbjct: 80 IAQKENSMLPVYA-TATSGPSHSPTFISTVEFAGKVFTGDEAKTKKLAEMSAAKIA 134 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 10/69 (14%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-----APAQGMDCSKRAA 211 K +LQ +A P Y R GP H PRF V G + ++A Sbjct: 5 YKGQLQAYALKHNLELPVYA-NEREGPPHAPRFRCKVTFCGQTFQSLEFF----PTLKSA 59 Query: 212 EQVAAAEVL 220 E AA L Sbjct: 60 EHAAAKIAL 68 >gi|213626233|gb|AAI70035.1| Unknown (protein for MGC:196762) [Xenopus laevis] Length = 1313 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ + L E + E+++ + GP HDP+FT V+I + +K+ A+ Sbjct: 720 NKNPISLLMEHGQKSGNMC-EFQLVSQEGPPHDPKFTYTVKIGNQTFPPVVANNKKMAKH 778 Query: 214 VAAAEVLKRE 223 +AA ++ Sbjct: 779 LAAEAAVREL 788 Score = 40.4 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + + L E+A AK E+K+ ++GP HDP+F ++ G Sbjct: 839 NPVSGLLEYARAKGFAA-EFKMVNQTGPPHDPKFVFQAKVGGR 880 Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%) Query: 154 RRDAKTELQEWAH--AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 ++ + L E+ H ++ ++ + +SGP HDPRF + I G S Sbjct: 616 EKNPVSGLLEFTHYCSQQC---DFALLNQSGPSHDPRFKIQAVIDGRRFPVAEANS 668 >gi|148233972|ref|NP_001081675.1| adenosine deaminase, RNA-specific [Xenopus laevis] gi|1932813|gb|AAB51687.1| dsRNA adenosine deaminase [Xenopus laevis] Length = 1270 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ + L E + E+++ + GP HDP+FT V+I + +K+ A+ Sbjct: 677 NKNPISLLMEHGQKSGNMC-EFQLVSQEGPPHDPKFTYTVKIGNQTFPPVVANNKKMAKH 735 Query: 214 VAAAEVLKRE 223 +AA ++ Sbjct: 736 LAAEAAVREL 745 Score = 40.4 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + + L E+A AK E+K+ ++GP HDP+F ++ G Sbjct: 796 NPVSGLLEYARAKGFAA-EFKMVNQTGPPHDPKFVFQAKVGGR 837 Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%) Query: 154 RRDAKTELQEWAH--AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 ++ + L E+ H ++ ++ + +SGP HDPRF + I G S Sbjct: 572 EKNPVSGLLEFTHYCSQQC---DFALLNQSGPSHDPRFKIQAVIDGRRFPVAEANS 624 >gi|21357105|ref|NP_649541.1| mitochondrial ribosomal protein L44 [Drosophila melanogaster] gi|7296746|gb|AAF52025.1| mitochondrial ribosomal protein L44 [Drosophila melanogaster] Length = 321 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 80/235 (34%), Gaps = 35/235 (14%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55 KR+G +F S L++A T S + ++ L G +I + Sbjct: 72 KRLGESFE-LSELQRAFTEKSFAEREEDRRRQLGIEESDLQMPHNSDLVEKGQQIARAYV 130 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI- 114 L + L + L+S ET + V+ L I + S Sbjct: 131 EAFLQHQLPKVPNEGLQAIASYLLSTETLAHVSTHLGTKDLI--------QSTEYPPSAE 182 Query: 115 -QADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKF 169 QA + ++I AL GIE A FV + Q+ L ++ L++ + Sbjct: 183 SQAKSLHAVIGALASSSGIERAFIFVRDFICTQLNQKDLLEVWTPQEPIQLLEKICQERK 242 Query: 170 GVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 E ++ G + + V + + +G + A + AA + L+ Sbjct: 243 LGEAEPRLLGDCGK--NTVLAAYQVGIYANRQLLGKGFGEDVKTATETAALDALQ 295 >gi|328865991|gb|EGG14377.1| hypothetical protein DFA_12149 [Dictyostelium fasciculatum] Length = 336 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMDCSKRA 210 + + K LQE P Y + + FT V+ S + G +K+ Sbjct: 26 QENYKGVLQELCQKTKEPVPIYSESVQHYEGGQNLFTSEVKCSMKGVSFVNSGKGKTKKE 85 Query: 211 AEQVAAAEVLK 221 AE+ +A L+ Sbjct: 86 AEKNSAFSTLQ 96 >gi|94483690|gb|ABF22807.1| double-stranded RNA binding protein [Variola virus] gi|94485708|gb|ABF24815.1| double-stranded RNA binding protein [Variola virus] gi|94487937|gb|ABF27033.1| double-stranded RNA binding protein [Variola virus] Length = 192 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 105 DVIPAKKIIDWKNANPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFN 162 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 163 KADGKSKRDAKNNAAKLAVDKL 184 >gi|66802830|ref|XP_635258.1| hypothetical protein DDB_G0291496 [Dictyostelium discoideum AX4] gi|60463547|gb|EAL61732.1| hypothetical protein DDB_G0291496 [Dictyostelium discoideum AX4] Length = 357 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 34 HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 +++E +E LEF GD L LIST L N+ L+ + S + +L Sbjct: 26 KTHKERFEILEFHGDSTLSYLISTYLLNYKTYYNPHLLTKLRSLASSNQLLCDFFNLFEL 85 Query: 94 ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 F+ S+ +AD+VE LI+ L + + K + +G+ Sbjct: 86 EDFL---SEEELPRDCKNIKPRADIVECLISE--LSQSKDSEAELLLKGIVGFLISAGEK 140 Query: 154 RRD 156 D Sbjct: 141 ELD 143 >gi|50237565|gb|AAT71898.1| dsRNA-specific ribonuclease [Rock bream iridovirus] Length = 265 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 79/233 (33%), Gaps = 43/233 (18%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG-------E 70 N + TH S +H +YE E LGD I+ ++ F Sbjct: 37 KNTQVFHSVFTH-SKAHPVN-NYEWYEKLGDAIIASVMPQYYMERFPKLAHDPSATVART 94 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQADVVESLIAALYLD 129 +S + S T S +A+++ ++ + + D E+++ A+ + Sbjct: 95 VSQLAITYQSGTTMSTIAQKMGFLKWVVAHRDGVAPASYKEQQRLLEDTFEAMVGAISIT 154 Query: 130 ---------GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT----PEY- 175 G F+ + ++ D K+ L+E V EY Sbjct: 155 MDDATGVKCSGHIACYRFLKYAYGLINMRLDGLI-DNKSMLKELIDMHSSVLDSFTFEYT 213 Query: 176 ----KVTFRSGPDHDPRFTV-VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +T G ++TV V ++ L SKR E+V A +VL + Sbjct: 214 NNVMTLTVAHG-----KYTVSEVNVNNL--------SKRELEKVLAGKVLAQL 253 >gi|259488709|tpe|CBF88369.1| TPA: 60S ribosomal protein L3 (AFU_orthologue; AFUA_1G12730) [Aspergillus nidulans FGSC A4] Length = 406 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 11/113 (9%) Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKF 169 A V +++ A+YL G A F +++ R L RD L + + Sbjct: 262 AAFVRAIMGAIYLHAGRAAAKRFFEQHILSRHLDISSLFNFSLPTRD----LAQLCAREN 317 Query: 170 GVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P K+ +G P F V + +G S A AA LK Sbjct: 318 YEPPVAKIISETGRRSRHPVFVVGIFSGQDKLGEGAGASLPEARSRAAVAALK 370 >gi|242025570|ref|XP_002433197.1| staufen, putative [Pediculus humanus corporis] gi|212518738|gb|EEB20459.1| staufen, putative [Pediculus humanus corporis] Length = 767 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +Y++T GP H FTV + + S + A+ AAAE L + Sbjct: 132 QYRLTNEHGPAHKKSFTVTLTLGTEEY-TADAPSIKKAQHSAAAEALAK 179 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 1/56 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + ++L + K P Y + G F + V IS L A G S Sbjct: 443 DDNMNPISKLIKIQQVKKEKEPLYTILEERGSSKKKEFLMEVSISNLK-ATGTGPS 497 >gi|67517561|ref|XP_658601.1| hypothetical protein AN0997.2 [Aspergillus nidulans FGSC A4] gi|40746409|gb|EAA65565.1| hypothetical protein AN0997.2 [Aspergillus nidulans FGSC A4] Length = 464 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 11/113 (9%) Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKF 169 A V +++ A+YL G A F +++ R L RD L + + Sbjct: 320 AAFVRAIMGAIYLHAGRAAAKRFFEQHILSRHLDISSLFNFSLPTRD----LAQLCAREN 375 Query: 170 GVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P K+ +G P F V + +G S A AA LK Sbjct: 376 YEPPVAKIISETGRRSRHPVFVVGIFSGQDKLGEGAGASLPEARSRAAVAALK 428 >gi|332022056|gb|EGI62381.1| 39S ribosomal protein L44, mitochondrial [Acromyrmex echinatior] Length = 314 Score = 55.9 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 78/235 (33%), Gaps = 29/235 (12%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ---------------ESYERLEFLGDRILG 52 +R+ +F N LE+A T+ S + + L G+++ Sbjct: 68 AFNERLSESF-NMEKLEQAFTNRSYFIQEEQKQKEMGIENPVLDIKDNTELIIKGEKLTS 126 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 ++ L A E + + L+S E ++ A + I + +K Sbjct: 127 EIVQAYLVQVLPQASEDVIISLHDYLLSEEILAKAAFHIGTKDIILTEAIAQKT------ 180 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAK 168 AD +L+AAL + FV + ++ L + L + + Sbjct: 181 --LADTFFALVAALAESVDVNHTANFVRDFLIVILAEKDLTEIWKPANPVELLNDILRKQ 238 Query: 169 FGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E ++ + G + + + + + G + + A+ AA VL R Sbjct: 239 NRSLAEPRLIAQVGENTLEVVYHIALYCDKEFLGSGFGQTIQEAKNTAAINVLSR 293 >gi|242037143|ref|XP_002465966.1| hypothetical protein SORBIDRAFT_01g049110 [Sorghum bicolor] gi|241919820|gb|EER92964.1| hypothetical protein SORBIDRAFT_01g049110 [Sorghum bicolor] Length = 178 Score = 55.9 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 6/74 (8%) Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 + ELQE + EYK R+G TV V + G+ + Sbjct: 1 MVTPDTLPMHPVRELQERCQQQAEGL-EYKA-SRTGN----VATVEVFVDGIQIGVAQNP 54 Query: 207 SKRAAEQVAAAEVL 220 K+ A+++AA L Sbjct: 55 QKKMAQKLAARNAL 68 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214 L + + P+Y+ GP H RF V ++ + + S + A+ Sbjct: 99 LNDICLRRQWPMPQYRCINEGGPAHAKRFVYAVRVNTSDRGWTDECIGEPMPSVKKAKDS 158 Query: 215 AAAEVLK 221 AA +L+ Sbjct: 159 AAVLLLE 165 >gi|194755679|ref|XP_001960111.1| GF13203 [Drosophila ananassae] gi|190621409|gb|EDV36933.1| GF13203 [Drosophila ananassae] Length = 1036 Score = 55.9 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 42/88 (47%), Gaps = 4/88 (4%) Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVV 193 ++ K++ ++ + T++ + + P +++ ++G + R F + V Sbjct: 707 RKRLNVAIKEKTVELDDAE-NPITKVIQLQQMRKEKEPIFELIAKNGNETSRRREFVMEV 765 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLK 221 SG + A+G SK+ A++ AA +L+ Sbjct: 766 TASG-STARGTGNSKKLAKRNAAQALLE 792 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++T GP H FTV +++ + A+ +AA++ ++ Sbjct: 334 QYRLTGERGPAHCKTFTVTLKLGEEEY-SADGFKIKKAQHLAASKAIE 380 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 K +T +KV GP H F + G +G K+ +++ AA ++L Sbjct: 596 KRSMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKLSKKRAAEKML 647 >gi|208690889|gb|ACI31220.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Cercocebus torquatus atys] Length = 554 Score = 55.9 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 6/59 (10%) Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 A K T Y+ + GP+ F +I G SK+ A+Q+AA L Sbjct: 108 IAQKKRL-TVNYEQCTSGVHGPEG---FHYKCKIGDKEYGIGTGSSKQEAKQLAAKLAL 162 Score = 37.0 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 EL ++ + G+T Y+ +GP HD RFT V + S Sbjct: 13 ELNKYRQKQ-GITLSYQELPNTGPPHDRRFTFQVVTDRRKFPEAEGRS 59 >gi|27820005|gb|AAL39540.2| LD10028p [Drosophila melanogaster] Length = 334 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 80/235 (34%), Gaps = 35/235 (14%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55 KR+G +F S L++A T S + ++ L G +I + Sbjct: 85 KRLGESFE-LSELQRAFTEKSFAEREEDRRRQLGIEESDLQMPHNSDLVEKGQQIARAYV 143 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI- 114 L + L + L+S ET + V+ L I + S Sbjct: 144 EAFLQHQLPKVPNEGLQAIASYLLSTETLAHVSTHLGTKDLI--------QSTEYPPSAE 195 Query: 115 -QADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKF 169 QA + ++I AL GIE A FV + Q+ L ++ L++ + Sbjct: 196 SQAKSLHAVIGALASSSGIERAFIFVRDFICTQLNQKDLLEVWTPQEPIQLLEKICQERK 255 Query: 170 GVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 E ++ G + + V + + +G + A + AA + L+ Sbjct: 256 LGEAEPRLLGDCGK--NTVLAAYQVGIYANRQLLGKGFGEDVKTATETAALDALQ 308 >gi|323347128|gb|EGA81403.1| Mrpl3p [Saccharomyces cerevisiae Lalvin QA23] Length = 390 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 69/220 (31%), Gaps = 37/220 (16%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD------ 92 L +G +L ++ + + L+ N+ +S + +A+ Sbjct: 151 DNHGLNIMGKNLLSYHVTKSIIQKYPRLPTVVLNAAVNAYISEAVLAHIAKYWGIEVETT 210 Query: 93 --LASFIRVSSDLRKDVCSFM----------------------TSIQADVVESLIAALYL 128 L+ ++++ + TS A V S+IAA++ Sbjct: 211 SVLSRYLKM-EPFEFTLGRLKFFNNSLNSKDGIELITGKNFSETSALAMSVRSIIAAIWA 269 Query: 129 ---DGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + F+D + R L K + EL + P K+ SG Sbjct: 270 VTEQKDSQAVYRFIDDHIMSRKLDITKMFQFEQPTRELAMLCRREGLEKPVSKLVAESGR 329 Query: 184 -DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F V V +G S + A+ AA + L + Sbjct: 330 LSKSPVFIVHVFSGEEXLGEGYGSSLKEAKARAATDALMK 369 >gi|332229969|ref|XP_003264158.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 3 [Nomascus leucogenys] Length = 490 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 217 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 270 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 330 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 376 >gi|332229967|ref|XP_003264157.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 2 [Nomascus leucogenys] Length = 658 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 385 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 438 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 498 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 544 >gi|332229965|ref|XP_003264156.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 1 [Nomascus leucogenys] Length = 672 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558 >gi|327288450|ref|XP_003228939.1| PREDICTED: spermatid perinuclear RNA-binding protein-like [Anolis carolinensis] Length = 694 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 418 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 471 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 531 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 577 >gi|326930520|ref|XP_003211394.1| PREDICTED: spermatid perinuclear RNA-binding protein-like [Meleagris gallopavo] Length = 672 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 398 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 451 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 511 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 557 >gi|301769247|ref|XP_002920042.1| PREDICTED: spermatid perinuclear RNA-binding protein-like [Ailuropoda melanoleuca] Length = 672 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558 >gi|297270177|ref|XP_001084509.2| PREDICTED: spermatid perinuclear RNA-binding protein isoform 4 [Macaca mulatta] Length = 658 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 385 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 438 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 498 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 544 >gi|291408373|ref|XP_002720487.1| PREDICTED: spermatid perinuclear RNA binding protein [Oryctolagus cuniculus] Length = 696 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 423 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 476 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 536 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 582 >gi|281350170|gb|EFB25754.1| hypothetical protein PANDA_008719 [Ailuropoda melanoleuca] Length = 672 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558 >gi|224073921|ref|XP_002190904.1| PREDICTED: spermatid perinuclear RNA binding protein [Taeniopygia guttata] Length = 673 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 398 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 451 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558 >gi|194225808|ref|XP_001500803.2| PREDICTED: spermatid perinuclear RNA binding protein [Equus caballus] Length = 672 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558 >gi|149047906|gb|EDM00522.1| spermatid perinuclear RNA binding protein, isoform CRA_b [Rattus norvegicus] Length = 648 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558 >gi|132626573|ref|NP_445868.2| spermatid perinuclear RNA-binding protein [Rattus norvegicus] gi|149047905|gb|EDM00521.1| spermatid perinuclear RNA binding protein, isoform CRA_a [Rattus norvegicus] Length = 672 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558 >gi|126294271|ref|XP_001371295.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 704 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 431 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 484 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 544 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 590 >gi|119607972|gb|EAW87566.1| spermatid perinuclear RNA binding protein, isoform CRA_d [Homo sapiens] Length = 648 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558 >gi|119607969|gb|EAW87563.1| spermatid perinuclear RNA binding protein, isoform CRA_a [Homo sapiens] Length = 490 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 217 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 270 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 330 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 376 >gi|114626614|ref|XP_001139686.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] Length = 686 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 404 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 457 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 526 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 572 >gi|114626618|ref|XP_001139454.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] Length = 615 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558 >gi|114626612|ref|XP_001139859.1| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes] Length = 677 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 404 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 457 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 517 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 563 >gi|114626620|ref|XP_520244.2| PREDICTED: hypothetical protein isoform 7 [Pan troglodytes] Length = 592 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558 >gi|114626616|ref|XP_001139781.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes] Length = 676 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 404 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 457 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 516 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 562 >gi|297270175|ref|XP_001084032.2| PREDICTED: spermatid perinuclear RNA-binding protein isoform 1 [Macaca mulatta] Length = 672 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558 >gi|71897299|ref|NP_001025851.1| spermatid perinuclear RNA-binding protein [Gallus gallus] gi|75571231|sp|Q5ZIL4|STRBP_CHICK RecName: Full=Spermatid perinuclear RNA-binding protein gi|53135487|emb|CAG32429.1| hypothetical protein RCJMB04_25e3 [Gallus gallus] Length = 672 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 398 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 451 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 511 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 557 >gi|38114853|gb|AAH02693.2| STRBP protein [Homo sapiens] Length = 615 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 342 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 395 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 455 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 501 >gi|26347661|dbj|BAC37479.1| unnamed protein product [Mus musculus] Length = 300 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 27 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 80 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 140 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 186 >gi|114842377|ref|NP_033287.2| spermatid perinuclear RNA-binding protein [Mus musculus] gi|81879604|sp|Q91WM1|STRBP_MOUSE RecName: Full=Spermatid perinuclear RNA-binding protein gi|15928464|gb|AAH14710.1| Spermatid perinuclear RNA binding protein [Mus musculus] gi|123229640|emb|CAM21472.1| spermatid perinuclear RNA binding protein [Mus musculus] gi|148676766|gb|EDL08713.1| spermatid perinuclear RNA binding protein, isoform CRA_a [Mus musculus] Length = 672 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558 >gi|13377630|gb|AAK20832.1|AF333337_1 spermatid perinuclear RNA-binding protein [Homo sapiens] Length = 673 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 400 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 453 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 513 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 559 >gi|81872622|sp|Q9JKU6|STRBP_RAT RecName: Full=Spermatid perinuclear RNA-binding protein; AltName: Full=74 kDa double-stranded RNA-binding protein; Short=p74 gi|7329162|gb|AAF59924.1|AF226864_1 double-stranded RNA-binding protein p74 [Rattus norvegicus] Length = 671 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +Y++ +G HD RF + VE+ G +G +K+ A++V L++ Sbjct: 527 KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPNKKVAKEV--QRTLEKL 573 >gi|80478568|gb|AAI08732.1| STRBP protein [Homo sapiens] Length = 589 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558 >gi|115496278|ref|NP_001069207.1| spermatid perinuclear RNA-binding protein [Bos taurus] gi|122132446|sp|Q08E27|STRBP_BOVIN RecName: Full=Spermatid perinuclear RNA-binding protein gi|115305044|gb|AAI23454.1| Spermatid perinuclear RNA binding protein [Bos taurus] gi|296482172|gb|DAA24287.1| spermatid perinuclear RNA-binding protein [Bos taurus] Length = 672 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558 >gi|73968135|ref|XP_863842.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 8 [Canis familiaris] Length = 640 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 367 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 420 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 480 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 526 >gi|73968131|ref|XP_863799.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 6 [Canis familiaris] Length = 656 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 383 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 436 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 496 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 542 >gi|73968127|ref|XP_863753.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 4 [Canis familiaris] Length = 678 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 404 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 457 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 518 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 564 >gi|73968122|ref|XP_863686.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 2 [Canis familiaris] Length = 648 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558 >gi|73968137|ref|XP_863863.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 9 [Canis familiaris] Length = 490 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 217 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 270 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 330 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 376 >gi|73968139|ref|XP_863888.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 10 [Canis familiaris] Length = 676 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 403 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 456 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 516 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 562 >gi|73968125|ref|XP_863730.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 3 [Canis familiaris] Length = 678 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 410 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 463 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 518 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 564 >gi|73968129|ref|XP_863778.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 5 [Canis familiaris] Length = 615 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558 >gi|57092117|ref|XP_537853.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 1 [Canis familiaris] Length = 672 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558 >gi|197099302|ref|NP_001126458.1| spermatid perinuclear RNA-binding protein [Pongo abelii] gi|75054828|sp|Q5R6Y5|STRBP_PONAB RecName: Full=Spermatid perinuclear RNA-binding protein gi|55731530|emb|CAH92475.1| hypothetical protein [Pongo abelii] Length = 672 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558 >gi|673454|emb|CAA59167.1| spermatid perinuclear RNA binding protein [Mus musculus] gi|148676767|gb|EDL08714.1| spermatid perinuclear RNA binding protein, isoform CRA_b [Mus musculus] Length = 648 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558 >gi|283806705|ref|NP_001164608.1| spermatid perinuclear RNA-binding protein isoform 2 [Homo sapiens] gi|114626610|ref|XP_001139946.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 5 [Pan troglodytes] gi|296190783|ref|XP_002743339.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 2 [Callithrix jacchus] gi|12053237|emb|CAB66800.1| hypothetical protein [Homo sapiens] gi|55664365|emb|CAH70299.1| spermatid perinuclear RNA binding protein [Homo sapiens] gi|119607971|gb|EAW87565.1| spermatid perinuclear RNA binding protein, isoform CRA_c [Homo sapiens] Length = 658 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 385 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 438 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 498 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 544 >gi|7023885|dbj|BAA92120.1| spermatid perinuclear RNA-binding protein. [Homo sapiens] Length = 490 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 217 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 270 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 330 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 376 >gi|21361745|ref|NP_060857.2| spermatid perinuclear RNA-binding protein isoform 1 [Homo sapiens] gi|114626608|ref|XP_001140028.1| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes] gi|296190781|ref|XP_002743338.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 1 [Callithrix jacchus] gi|332832824|ref|XP_003312319.1| PREDICTED: spermatid perinuclear RNA-binding protein [Pan troglodytes] gi|74752134|sp|Q96SI9|STRBP_HUMAN RecName: Full=Spermatid perinuclear RNA-binding protein gi|14042893|dbj|BAB55434.1| unnamed protein product [Homo sapiens] gi|17389385|gb|AAH17732.1| Spermatid perinuclear RNA binding protein [Homo sapiens] gi|55664366|emb|CAH70300.1| spermatid perinuclear RNA binding protein [Homo sapiens] gi|117644880|emb|CAL37906.1| hypothetical protein [synthetic construct] gi|119607970|gb|EAW87564.1| spermatid perinuclear RNA binding protein, isoform CRA_b [Homo sapiens] gi|168278000|dbj|BAG10978.1| spermatid perinuclear RNA-binding protein [synthetic construct] Length = 672 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558 >gi|10436629|dbj|BAB14873.1| unnamed protein product [Homo sapiens] Length = 405 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G Sbjct: 132 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 185 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 245 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 291 >gi|255931063|ref|XP_002557088.1| Pc12g01930 [Penicillium chrysogenum Wisconsin 54-1255] gi|211581707|emb|CAP79820.1| Pc12g01930 [Penicillium chrysogenum Wisconsin 54-1255] Length = 153 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 11/126 (8%) Query: 9 LEKR-IG--YAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 EK +G Y F +R+ + +AL S +H Q++ L +GD IL + Sbjct: 15 FEKLVLGQAYRFTDRAFIREALQGPSIYNHDGQKT---LALVGDAILRQSLVEQGRER-- 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S E+ + S L L FI + T A +E++I Sbjct: 70 SETPEEIQNVITKVASNINLYYRGIALGLDPFIVKNPGQLGITAGRKT--MATTMEAIIG 127 Query: 125 ALYLDG 130 A++ D Sbjct: 128 AVFYDS 133 >gi|242083576|ref|XP_002442213.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor] gi|241942906|gb|EES16051.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor] Length = 198 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 3/64 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K +QE A + P Y + ++ + V+I G +G SK+ AE A Sbjct: 118 YKNFIQEIAQKEGISLPVYNTVPTN-KENSTAYKSSVQIKGE-IFEGEPGTSKKQAEMNA 175 Query: 216 AAEV 219 A Sbjct: 176 AKIA 179 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K+ +R + + D KT+L +A V P YK GP H PRF V I G Sbjct: 19 KKWKARRDHVVKESKTDFKTQLSVYAQKLSKVPPLYKHIQE-GPAHAPRFNAEVTIDGQT 77 Query: 200 PAQ 202 + Sbjct: 78 FGR 80 >gi|93278802|pdb|2B7V|A Chain A, Structure Of Adar2 Dsrbm2 gi|310689630|pdb|2L2K|B Chain B, Solution Nmr Structure Of The RG STEM LOOP RNA-Adar2 Dsrbm2 Complex Length = 71 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +Y SG H F + V + G +G +K+ A+ AA L Sbjct: 12 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 63 >gi|242014706|ref|XP_002428026.1| Double-stranded RNA-specific editase Adar, putative [Pediculus humanus corporis] gi|212512545|gb|EEB15288.1| Double-stranded RNA-specific editase Adar, putative [Pediculus humanus corporis] Length = 669 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 EYK + ++GP + P FT V+I+G+ G +K+ A+ AA L Sbjct: 59 EYKFSVQNGPGNSPIFTTTVDINGVRY-IGRGKNKKLAKHNAAEAAL 104 >gi|145301789|gb|ABP52434.1| double-stranded RNA-binding protein [Vaccinia virus] Length = 189 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 102 DVIPAKKIIDWKDANPVTVINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 159 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 160 KADGKSKRDAKNNAAKLAVDKL 181 >gi|56713422|gb|AAW23462.1| double-stranded RNA-specific adenosine [Vaccinia virus] gi|56713706|gb|AAW23744.1| double-stranded RNA-specific adenosine [Vaccinia virus] Length = 190 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 103 DVIPAKKIIDWKDANPVTVINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182 >gi|167412541|gb|ABZ79975.1| double-stranded RNA binding protein [Vaccinia virus GLV-1h68] Length = 190 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 103 DVIPAKKIIDWKDANPVTVINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182 >gi|88854099|gb|ABD52517.1| double-stranded RNA-specific adenosine deaminase-like protein p25 [Vaccinia virus] Length = 190 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 103 DVIPAKKIIDWKDANPVTVINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182 >gi|104642088|gb|ABF73314.1| double-stranded RNA-binding protein [Vaccinia virus] Length = 189 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 102 DVIPAKKIIDWKGANPVTVINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 159 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 160 KADGKSKRDAKNNAAKLAVDKL 181 >gi|77434212|gb|ABA82143.1| double-stranded RNA-binding protein [Vaccinia virus] gi|77434276|gb|ABA82145.1| double-stranded RNA-binding protein [Vaccinia virus] gi|77434313|gb|ABA82146.1| double-stranded RNA-binding protein [Vaccinia virus] gi|77434422|gb|ABA82148.1| double-stranded RNA-binding protein [Vaccinia virus] gi|82408803|gb|ABB73195.1| double-stranded RNA-binding protein [Vaccinia virus] gi|317018624|gb|ADU86890.1| E3L [Vaccinia virus] Length = 179 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 97 DVIPAKKIIDWKGANPVTVINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 154 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 155 KADGKSKRDAKNNAAKLAVDKL 176 >gi|67937802|gb|AAY83357.1| putative double-stranded RNA binding protein [Vaccinia virus] Length = 190 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 103 DVIPAKKIIDWKGANPVTVINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182 >gi|44971411|gb|AAS49761.1| RPXV048 [Rabbitpox virus] Length = 190 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 103 DVIPAKKIIDWKGANPVTVINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182 >gi|400554|gb|AAA02759.1| double-stranded RNA-binding protein [Vaccinia virus] Length = 190 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 103 DVIPAKKIIDWKGANPVTVINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182 >gi|66275856|ref|YP_232941.1| double-stranded RNA binding protein [Vaccinia virus] gi|137622|sp|P21605|VE03_VACCV RecName: Full=Protein E3; AltName: Full=p25 gi|335750|gb|AAB59823.1| ORF2 [Vaccinia virus] gi|29692165|gb|AAO89338.1| double-stranded RNA binding protein [Vaccinia virus WR] Length = 190 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 103 DVIPAKKIIDWKGANPVTVINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182 >gi|256600044|gb|ACV04762.1| Dicer [Patiria miniata] Length = 663 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + ERLE LGD L ++ L+ + EG+LS + VS ++ + D+ ++ Sbjct: 375 NLERLEMLGDSFLKQAVTIYLYCTYPRRHEGKLSYMRSKQVSNFNLYRLGKRKDIGRKMQ 434 Query: 99 V 99 V Sbjct: 435 V 435 >gi|301628882|ref|XP_002943575.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific adenosine deaminase-like [Xenopus (Silurana) tropicalis] Length = 1170 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 30/57 (52%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +K G E+++ + GP HDP+FT V I + SK+ A+Q+AA ++ Sbjct: 587 SKSGSMCEFQLVSQEGPPHDPKFTYTVRIGNQTFPPVVANSKKMAKQLAAEAAVREL 643 Score = 41.2 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 14/80 (17%) Query: 132 IEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAH--AKFGVTPEYKVTFRSGPDHDP 187 E F ++K R ++ + L E+ H ++ ++ + +SGP HDP Sbjct: 444 YEPVKEFNRLEKLLACR-------EKNPVSGLLEFTHYCSQHC---DFVLLNQSGPSHDP 493 Query: 188 RFTVVVEISGLAPAQGMDCS 207 RF + I G + S Sbjct: 494 RFKIQAVIDGRSFPVAEASS 513 Score = 40.4 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + + L E+A AK E+K+ ++GP HDP+F ++ G Sbjct: 694 NPVSGLLEYARAKGFAA-EFKMVNQTGPPHDPKFVFQAKVGGR 735 >gi|113195237|ref|YP_717367.1| double-stranded RNA binding protein [Taterapox virus] gi|90660513|gb|ABD97626.1| double-stranded RNA binding protein [Taterapox virus] Length = 190 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 103 DVIPAKKIIDWKNANPVTIINEYCQITKRDW-SFRIESV-GPSNSPIFYACVDIDGRVFD 160 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + SKR A+ AA + + Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182 >gi|156554791|ref|XP_001606035.1| PREDICTED: similar to staufen [Nasonia vitripennis] Length = 587 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 1/72 (1%) Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + Y + R + + L + AK P Y + G F + V + Sbjct: 284 RNLIKVYQEPRTEADSSEEVNPISRLVQIQQAKREREPVYNLVEEKGAPRRREFVMEVSV 343 Query: 196 SGLAPAQGMDCS 207 G AQG + Sbjct: 344 -GQHSAQGTGPN 354 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K G++ + V +G H F + G SK+ +++ AA +L+ Sbjct: 201 KRGLSVSFDVVSETGKPHIRTFMTRCTVGDKV-TLGEGSSKKVSKKRAAELMLEEL 255 >gi|302788362|ref|XP_002975950.1| hypothetical protein SELMODRAFT_104739 [Selaginella moellendorffii] gi|300156226|gb|EFJ22855.1| hypothetical protein SELMODRAFT_104739 [Selaginella moellendorffii] Length = 479 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 6/140 (4%) Query: 23 LEKALTHSS-ISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 L+ H S + + YERLEF+G +I ++++ L A L+ + Sbjct: 323 LQLCFMHPSAYKNDHPRFCYERLEFIGSKIQDVVMAERLLMKHLDAPAIFLNRIHRGITI 382 Query: 81 AETCSQVARELDLASFIRVSSD---LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 C + R L FI + + ++L Y+ G Sbjct: 383 NRICGRRLRMKRLHKFITYGEERQLEFARCHRLRNFTHSATQQALHGLGYIVYGKAEVRR 442 Query: 138 FVDKYWK-QRALKSGKFRRD 156 + ++ ++ L + D Sbjct: 443 LMFDVFEFEKPLPTQADFND 462 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 21/146 (14%) Query: 23 LEKALTHS-SIS-----HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 L A H S H+ Y RL FLG+ +L L ++ LL + L R Sbjct: 93 LYLAFQHEESYRAKRMRHTRVGHY-RLAFLGEFVLDLAMAELLLQMYPRDTPASLRERAF 151 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD--VVESLIAALYLDGGIEV 134 ++ + ++ + L + D VC F V +LIAA+YL G+ Sbjct: 152 AVTNKRGLERILSDAGLHQ-LAFPEDENFHVCLFS---LPCRSVFLALIAAVYLSLGMSE 207 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTE 160 + + + F DAK+ Sbjct: 208 VYKLLFETF--------AFDLDAKSA 225 >gi|76155250|gb|AAX26507.2| SJCHGC08817 protein [Schistosoma japonicum] Length = 167 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 12/116 (10%) Query: 110 FMTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWA- 165 + D+ ESL A++LD + K+R + + + +L E Sbjct: 39 EIPKALGDIFESLAGAIFLDSNFSLDTVWQVFYPIMKERIERYTACIPKSPVRQLLELEP 98 Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P V D R +V + G G+ + R A+ +AA L+ Sbjct: 99 EGTKFERPRRMV--------DGRISVCAHVLGKGRFYGVGRNYRLAKSLAAKRALR 146 >gi|116326694|ref|YP_803231.1| ribonuclease III [Trichoplusia ni ascovirus 2c] gi|102231702|gb|ABF70525.1| ribonuclease III [Trichoplusia ni ascovirus 2c] Length = 678 Score = 55.1 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 31/120 (25%) Query: 39 SYERLEFLGDRILGLLISTLLFNHF-----DSAKEGELSVRFNSLVSAETCSQVARELDL 93 +YE E++GD I+ I + + + S G ++ + V S+ + + L Sbjct: 157 NYEFFEYIGDAIINRYIIEYIRHKYVGIANTSHNIGIMTKLRSVFVGKRNLSKCSIRIGL 216 Query: 94 ASFIRV------------------SSDLRKDV--------CSFMTSIQADVVESLIAALY 127 F+ S + C + S+ D++ES I L+ Sbjct: 217 HKFLNCAFPLDMVRLEQYAQTIHDSPNEIDTQFDEPNFALCRELESLMEDLLESFIGVLW 276 >gi|29292938|dbj|BAC66440.1| double stranded RNA-dependent protein kinase [Bos taurus] Length = 533 Score = 55.1 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + G + L + K Y+ G D F + +I G+ + Sbjct: 92 IPEGPPIENYIGRLNTISQKKNLC-VTYEECKSKG-DGPEGFHYICKIGQEEYGSGVGST 149 Query: 208 KRAAEQVAAAEVLKR 222 K+ A+Q+AA ++ Sbjct: 150 KQEAKQLAAKLAYEK 164 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 17/42 (40%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV Y ++GP H+ RFT V I + S Sbjct: 18 QQKNGVEVRYCELAKTGPPHNFRFTYQVIIDDKEYPKAEGRS 59 >gi|302770230|ref|XP_002968534.1| hypothetical protein SELMODRAFT_145591 [Selaginella moellendorffii] gi|300164178|gb|EFJ30788.1| hypothetical protein SELMODRAFT_145591 [Selaginella moellendorffii] Length = 473 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 6/140 (4%) Query: 23 LEKALTHSS-ISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 L+ H S + + YERLEF+G +I ++++ L A L+ + Sbjct: 317 LQLCFMHPSAYKNDHPRFCYERLEFIGSKIQDVVMAERLLMKHLDAPAIFLNRIHRGITI 376 Query: 81 AETCSQVARELDLASFIRVSSD---LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 C + R L FI + + ++L Y+ G Sbjct: 377 NRICGRRLRMKRLHKFITYGEERQLEFARCHRLRNFTHSATQQALHGLGYIVYGKAEVRR 436 Query: 138 FVDKYWK-QRALKSGKFRRD 156 + ++ ++ L + D Sbjct: 437 LMFDVFEFEKPLPTQADFND 456 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 19/145 (13%) Query: 23 LEKALTHS-SIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 L A H S + + RL FLG+ +L L ++ LL + L R + Sbjct: 87 LYLAFQHEESYRAKRMRHTRVGHYRLAFLGEFVLDLAMAELLLQMYPRDTPASLRERAFA 146 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD--VVESLIAALYLDGGIEVA 135 + + ++ + L + D VC F V +LIAA+YL G+ Sbjct: 147 VTNKRGLERILSDAGLHQ-LAFPEDENFHVCLFS---LPCRSVFLALIAAVYLSLGMSEV 202 Query: 136 GTFVDKYWKQRALKSGKFRRDAKTE 160 + + + F DAK+ Sbjct: 203 YKLLFETF--------AFDLDAKSA 219 >gi|298256111|gb|ADI71334.1| RNase III-like protein [Bohle iridovirus] Length = 225 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 62/192 (32%), Gaps = 25/192 (13%) Query: 50 ILGLLISTLLFNHFDSAKEG----ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 + + F ++ S ++ S +A L FIR S Sbjct: 2 VASYFFPSYFLKRFPQLNSPKGVKTVARLKIYYGSKKSFSSIADSLGFWKFIR--SGPVP 59 Query: 106 DVCSFMTSIQADVVESLIAA--------LYLDG-GIEVAGTFVDKYWKQRALKSG-KFRR 155 S S+ D E+ + A +DG G VA + + + Sbjct: 60 VNPSTRESLLEDTFEAFLGAVCMAVDDEYSIDGLGAVVAYKIMADIFDDMDISLEYTALF 119 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQV 214 D T L+E K V V G T V+ + G + KR A++ Sbjct: 120 DTVTRLKELMDVKKDVLGGDVVYNHRGD------TTVITLKGRVIGKATGAIKRDRAKEA 173 Query: 215 A--AAEVLKREG 224 A A ++L+REG Sbjct: 174 AGQALDLLRREG 185 >gi|117935051|ref|NP_835210.2| interferon-induced, double-stranded RNA-activated protein kinase [Bos taurus] gi|117306699|gb|AAI26647.1| Eukaryotic translation initiation factor 2-alpha kinase 2 [Bos taurus] gi|296482562|gb|DAA24677.1| protein kinase, interferon-inducible double stranded RNA dependent [Bos taurus] Length = 533 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + G + L + K Y+ G D F + +I G+ + Sbjct: 92 IPEGPPIENYIGRLNTISQKKNLC-VTYEECKSKG-DGPEGFHYICKIGQEEYGSGVGST 149 Query: 208 KRAAEQVAAAEVLKR 222 K+ A+Q+AA ++ Sbjct: 150 KQEAKQLAAKLAYEK 164 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 17/42 (40%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV Y ++GP H+ RFT V I + S Sbjct: 18 QQKNGVEVRYCELAKTGPPHNFRFTYQVIIDDKEYPKAEGRS 59 >gi|298256127|gb|ADI71342.1| RNase III-like protein [Short-finned eel ranavirus] Length = 225 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 60/194 (30%), Gaps = 25/194 (12%) Query: 50 ILGLLISTLLFNHFDSAKEG----ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 + + F ++ S ++ S +A L FIR S Sbjct: 2 VASYFFPSYFLKRFPQLNSPKGVKTVARLKIYYGSKKSFSSIANSLGFWKFIR--SGPVP 59 Query: 106 DVCSFMTSIQADVVESLIAALYL----DGGIEVAGTFVDKYWKQRALKSGKFRRDA---- 157 S S+ D E+ + A+ + I+ G V D Sbjct: 60 VNPSARESLLEDTFEAFLGAVCTAVDDEYSIDGLGAVVSYKIMADIFDDMDISLDYTALF 119 Query: 158 --KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQV 214 T L+E K V V G T V+ + G + KR A++ Sbjct: 120 DTVTRLKELMDVKKDVLGGDAVYDHRGD------TTVITLKGRVIGKATGAIKRDRAKEA 173 Query: 215 A--AAEVLKREGIW 226 A A ++L+REG + Sbjct: 174 AGQALDLLRREGYF 187 >gi|293334879|ref|NP_001167729.1| hypothetical protein LOC100381417 [Zea mays] gi|223943645|gb|ACN25906.1| unknown [Zea mays] Length = 178 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 6/74 (8%) Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 + ELQE + EYK R+G TV V + G+ + Sbjct: 1 MVTPDTLPMHPVRELQERCQQQAEGL-EYKA-SRTGN----VATVEVLVDGIQIGVAQNP 54 Query: 207 SKRAAEQVAAAEVL 220 K+ A+++AA L Sbjct: 55 QKKMAQKLAARNAL 68 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214 L + + P+Y+ GP H RF V ++ + + S + A+ Sbjct: 99 LNDICLRRQWPMPQYRCINEGGPAHAKRFVYAVRVNTSDSGWTDECIGEPMPSVKKAKDS 158 Query: 215 AAAEVLK 221 AA +L+ Sbjct: 159 AAVLLLE 165 >gi|47227705|emb|CAG09702.1| unnamed protein product [Tetraodon nigroviridis] Length = 842 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 552 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVIIDGVTYGTGTASSKKLAK 609 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 610 NKAARATLE 618 >gi|221109699|ref|XP_002169974.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 349 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVA 215 K LQE+ TP YKV SGP + V + L + AE A Sbjct: 144 YKNSLQEYCQKSRLPTPSYKVVL-SGPG---MYIGNVTFNNTLVHGTVAYRIIKEAENNA 199 Query: 216 AAEVLKREG 224 A E LK+ G Sbjct: 200 AFEALKQLG 208 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 15/97 (15%) Query: 125 ALYL-DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ++Y+ G++ + D ++ ++ K++L E A + TP Y+ + +G Sbjct: 214 SIYIPIAGVKRSNDTQDPWYSKK--PKPALCSSFKSKLNELAQKRHLGTPTYQTIYSAGG 271 Query: 184 DHDPRFTVVVEISGLAPAQGMDCS----KRAAEQVAA 216 + V +G S K+ AEQ AA Sbjct: 272 -----YLSTVVFNGREF---KGMSPCMKKKDAEQNAA 300 >gi|28502787|gb|AAH47175.1| Ilf3 protein [Danio rerio] Length = 612 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + SKR A+ A +VL+ G+ T Sbjct: 415 QLKPGLQYKLISQTGPVHVPVFTMSVEVDGKN-FEASGPSKRTAKLHVAVKVLQDMGLPT 473 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VEI G QG + Sbjct: 524 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEIDGQK-FQGTGSN 575 >gi|47086831|ref|NP_997764.1| interleukin enhancer-binding factor 3 homolog [Danio rerio] gi|45501209|gb|AAH67172.1| Interleukin enhancer binding factor 3 [Danio rerio] Length = 833 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + SKR A+ A +VL+ G+ T Sbjct: 415 QLKPGLQYKLISQTGPVHVPVFTMSVEVDGKN-FEASGPSKRTAKLHVAVKVLQDMGLPT 473 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VEI G QG + Sbjct: 524 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEIDGQK-FQGTGSN 575 >gi|62510785|sp|Q6NXA4|ILF3_DANRE RecName: Full=Interleukin enhancer-binding factor 3 homolog Length = 833 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + SKR A+ A +VL+ G+ T Sbjct: 415 QLKPGLQYKLISQTGPVHVPVFTMSVEVDGKN-FEASGPSKRTAKLHVAVKVLQDMGLPT 473 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VEI G QG + Sbjct: 524 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEIDGQK-FQGTGSN 575 >gi|171688648|ref|XP_001909264.1| hypothetical protein [Podospora anserina S mat+] gi|170944286|emb|CAP70396.1| unnamed protein product [Podospora anserina S mat+] Length = 432 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 3/113 (2%) Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKF 169 A+ +++ A+Y G A +FV + R L + + EL + Sbjct: 259 EKAHANFARAVVGAVYTHCGRAAAKSFVKAHVLCRELDLERLFAFKHPTLELAMLCAREE 318 Query: 170 GVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P ++ +G P F V V +G + A AA LK Sbjct: 319 FEPPVARLLSETGRLSRTPVFVVGVYSGNDKLGEGQGATLEQARLKAAMHALK 371 Score = 38.1 bits (88), Expect = 0.98, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 3/73 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 + + + S L R+ + L L + L +S + + L FLG I+ S Sbjct: 89 LESAKLSALHARLSLSPK-IPLQTLARTLVDASADPNPLFNNSSLAFLGATIINYHASEW 147 Query: 59 LFNHFDSAKEGEL 71 H+ L Sbjct: 148 FMVHYPRLPMDVL 160 >gi|149019784|gb|EDL77932.1| DiGeorge syndrome critical region gene 8 (predicted), isoform CRA_b [Rattus norvegicus] Length = 620 Score = 55.1 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 566 NKAARATLE 574 >gi|148665097|gb|EDK97513.1| DiGeorge syndrome critical region gene 8, isoform CRA_b [Mus musculus] Length = 611 Score = 55.1 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 566 NKAARATLE 574 >gi|114685159|ref|XP_001167112.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 1 [Pan troglodytes] Length = 700 Score = 55.1 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 566 NKAARATLE 574 >gi|159163522|pdb|1X47|A Chain A, Solution Structure Of Dsrm Domain In Dgcr8 Protein Length = 98 Score = 55.1 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 71 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 72 NKAARATLE 80 >gi|73995913|ref|XP_543542.2| PREDICTED: similar to DiGeorge syndrome critical region gene 8 [Canis familiaris] Length = 782 Score = 55.1 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 489 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 546 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 547 NKAARATLE 555 >gi|21226646|ref|NP_632568.1| exoribonuclease II [Methanosarcina mazei Go1] gi|20904927|gb|AAM30240.1| Exoribonuclease II [Methanosarcina mazei Go1] Length = 605 Score = 55.1 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +D LQE+ AK P Y G + P FT G + + G K+ A Sbjct: 532 NTSKDPIFALQEYCQAKKLPLPAYSFEME-GATNRPIFTCTCTF-GSSTSTGQAGKKQRA 589 Query: 212 EQVAAAEVL 220 +++AA ++ Sbjct: 590 KRLAARAMI 598 >gi|307169925|gb|EFN62434.1| tRNA-dihydrouridine synthase 2-like [Camponotus floridanus] Length = 467 Score = 55.1 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 45/171 (26%), Gaps = 45/171 (26%) Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVC---------------------SFMTSIQ 115 + ++T Q+ L + R + +D S I Sbjct: 305 KFLDSQTLEQICEVWGLGDYCRSKNKEFRDKGLLGRFQVMPVMLDKDAKDNNVSHKRKIY 364 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 + SL+ +L KT L +W P Y Sbjct: 365 EENDVSLMRCAFLRNSYTTDSEL------------------PKTRLLKWTKENRKKMPIY 406 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGI 225 D F VV + G + +K+ AEQ AA L G+ Sbjct: 407 NTQQE-----DKLFCSVVTVDGRKYGSSFWEKNKKWAEQGAALVCLYFLGV 452 >gi|153792023|ref|NP_001093309.1| MLE protein [Bombyx mori] gi|147883246|gb|ABQ51917.1| MLE protein [Bombyx mori] Length = 1308 Score = 55.1 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213 D K+ L W AK G+TP + +GP H RF V + G + G +K+ A+ Sbjct: 1 MDIKSFLYTWC-AKKGLTPLFD-IRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQM 58 Query: 214 VAAAE 218 AA + Sbjct: 59 NAAKD 63 Score = 38.1 bits (88), Expect = 0.99, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 21/121 (17%) Query: 122 LIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFR------------RDAKTELQEWAHA 167 +I Y G E F +D+ +Q+ ++ + +AK++L ++ Sbjct: 117 VIGPAYQAYGGENDKKFSYIDRMQQQKNVEEAEDLDINSSLHGNWTMENAKSKLHQFLQ- 175 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + +Y V GPDH F + I + +K+ A + A ++++ Sbjct: 176 MNKINADY-VYKAVGPDHTRSFACELTIYVSQLGRNVTGRETASNKQTASKSCALSIVRQ 234 Query: 223 E 223 Sbjct: 235 L 235 >gi|195343659|ref|XP_002038413.1| GM10632 [Drosophila sechellia] gi|194133434|gb|EDW54950.1| GM10632 [Drosophila sechellia] Length = 321 Score = 55.1 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 76/235 (32%), Gaps = 35/235 (14%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ---------------ESYERLEFLGDRILGLLI 55 KR+G +F S L++A T S + + L G I + Sbjct: 72 KRLGESFE-LSELQRAFTEKSFAEREENRRRQLGIEESDLQMPHNSDLVEKGQHIARAYV 130 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI- 114 L + L + L+S ET + V+ L I + S Sbjct: 131 EAFLQHQLPKVPNEGLQAIASFLLSTETLAHVSSHLGTKDLI--------QSTEYPPSAE 182 Query: 115 -QADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKF 169 A + ++I AL GIE A FV + Q+ L + L++ + Sbjct: 183 SLAKSLHAVIGALASSSGIERAFIFVRDFICTQLNQKDLLDVWTPQKPIQLLEKICQERK 242 Query: 170 GVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 E ++ G + + V + + +G + A + AA + L+ Sbjct: 243 LGEAEPRLLGDCGK--NTVLAAYQVGIYANRQLLGKGFGEDVKTATETAALDALQ 295 >gi|157786750|ref|NP_001099335.1| microprocessor complex subunit DGCR8 [Rattus norvegicus] gi|149019782|gb|EDL77930.1| DiGeorge syndrome critical region gene 8 (predicted), isoform CRA_a [Rattus norvegicus] gi|149019783|gb|EDL77931.1| DiGeorge syndrome critical region gene 8 (predicted), isoform CRA_a [Rattus norvegicus] Length = 773 Score = 55.1 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 566 NKAARATLE 574 >gi|147898439|ref|NP_001085043.1| hypothetical protein LOC432110 [Xenopus laevis] gi|47506884|gb|AAH70985.1| MGC78846 protein [Xenopus laevis] Length = 772 Score = 55.1 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I+G+ G SK+ A+ Sbjct: 507 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVIINGVTYGTGTASSKKLAK 564 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 565 NKAARATLE 573 >gi|213512963|ref|NP_001133959.1| Spermatid perinuclear RNA-binding protein [Salmo salar] gi|209155962|gb|ACI34213.1| Spermatid perinuclear RNA-binding protein [Salmo salar] Length = 718 Score = 54.7 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 7/93 (7%) Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 I+ + K +A+ + + L + +YK+ +SGP H P FT+ Sbjct: 411 IKKMKRNLRKVLDSKAIDTNQ----PMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTM 464 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V++ + SK+ A+ A +VL+ G Sbjct: 465 SVDVDSTVH-EASGSSKKTAKLHVAVKVLQAMG 496 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ SG HD RF + VE+ G +G + Sbjct: 551 KNPVMELNEKRRGL--KYELISESGGSHDKRFAMEVEVDGQK-FRGAGPN 597 >gi|190345739|gb|EDK37673.2| hypothetical protein PGUG_01771 [Meyerozyma guilliermondii ATCC 6260] Length = 617 Score = 54.7 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 78/215 (36%), Gaps = 19/215 (8%) Query: 19 NRSLLEKALTHSSISH------------SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 N +L ++ TH S Q E+L G +L + + LL F A Sbjct: 152 NTNLRKRVFTHKSYRQISDFLEADSAEEFAQAHNEKLVLHGRSLLNVALLHLLDKKFPKA 211 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 + ++ L S+ +++A +L+ ++ + + + V + + AL Sbjct: 212 QAEDIESMKVRLSSSVVLTKMAMGYNLSQHLKHNISKELSN-EGKVLVLSTVFLAYLGAL 270 Query: 127 YLDG-GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 + +G ++ +++K + + + L ++ KF + P K +SG H Sbjct: 271 FSEGYSMDEICLWIEKLYDPIVAEFDSEHMHSARPL-AYSELKFLLDPHLKF-KQSG--H 326 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 DP FT G K A V + L Sbjct: 327 DP-FTFKAYYRDTVIGIGSHSDKMMARIVTSENAL 360 >gi|149431138|ref|XP_001511149.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus] Length = 197 Score = 54.7 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 4/72 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 K L EW H + P Y+ R + F VV ++ D SK+ AEQ A Sbjct: 98 PKMCLLEWCHKEKLPQPVYETVQR---PSNGLFCSVVTVAEQKYKSSMWDKSKKLAEQAA 154 Query: 216 AAEVLKREGIWT 227 A LK G+ T Sbjct: 155 AIVCLKALGLPT 166 >gi|124487075|ref|NP_001074679.1| 39S ribosomal protein L44, mitochondrial precursor [Mus musculus] gi|74142583|dbj|BAE33863.1| unnamed protein product [Mus musculus] gi|148684323|gb|EDL16270.1| mCG21676 [Mus musculus] Length = 333 Score = 54.7 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 76/234 (32%), Gaps = 29/234 (12%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQ-----------------ESYERLEFLGDRILGLL 54 R+ F+ LL+ A +S S + + + L G Sbjct: 78 RLQETFS-LDLLKTAFINSCYIKSEEAKRQSLGIEKEAALLNLKDNQELFEQGLSFSHRC 136 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ++ L + F + L VAR L + + +S++ + + Sbjct: 137 LTQFLEDEFPDLPAEGTESLVSFLTGEAVVCHVARNLAVEQ-LTLSAEFPVPLP-----V 190 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHAKFG 170 ++I AL G E A F+ + + F + L E + Sbjct: 191 LRQTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWTVVNPMGLLVEELKKRNI 250 Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 251 SAPESRLTRQSGSTTALPLYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKL 304 >gi|20178435|ref|NP_619856.1| CPXV069 protein [Cowpox virus] gi|20153053|gb|AAM13514.1|AF482758_65 CPXV069 protein [Cowpox virus] gi|14488159|emb|CAC42100.1| dsRNA binding protein [Cowpox virus] Length = 190 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 9/105 (8%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK-----TELQEWAHAKFGVTPE 174 +++ ++ D E + K + + K D K T + E+ Sbjct: 78 DAMADSIIDDASREKSMREDHKSFDD--VIPAKKIIDWKDANPVTIINEYCQITKRDW-S 134 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +++ GP + P F V+I G + SKR A+ AA Sbjct: 135 FRIESV-GPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLA 178 >gi|114685157|ref|XP_001167234.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 2 [Pan troglodytes] Length = 783 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 566 NKAARATLE 574 >gi|116787066|gb|ABK24361.1| unknown [Picea sitchensis] Length = 346 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 ++ + K L++ A K P YK + G H P FT +VEI+G A S Sbjct: 76 IEEVILPKKPKNVLEDIALKKNMPPPSYKFSKE-GEAHCPTFTAIVEINGAFYAGDPANS 134 Query: 208 KRAAEQVAAAEVLK 221 K+ A AA + ++ Sbjct: 135 KKDATNKAACKAIR 148 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 1/54 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 K LQE+ P Y G DH PRF V ++G + + Sbjct: 2 FKGRLQEYTQKNSFPLPVYDTVNE-GQDHIPRFKCTVTVNGARYDSPPGFNHKK 54 >gi|119479385|ref|XP_001259721.1| RNase III domain protein [Neosartorya fischeri NRRL 181] gi|119407875|gb|EAW17824.1| RNase III domain protein [Neosartorya fischeri NRRL 181] Length = 259 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 22/145 (15%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV----------- 73 A+TH S + +RL FLG RI+ L S L + +A Sbjct: 109 LAVTHKSFDQGRRGFNDRLAFLGKRIVQLQASLALVQNPGNASSSSTPDSFGREPFAHPA 168 Query: 74 ----------RFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESL 122 + L S +++A++ +L +R S + S M + A + ++ Sbjct: 169 LDGLKNLSPSTKSFLTSKPKLAELAQKYELQKVLRWSPRKPNNLASSGMELVLAHTMYAI 228 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA 147 I A+ L+ G VA + + Sbjct: 229 IGAIALEKGGHVANKVARERVLEPL 253 >gi|170172601|ref|NP_001116221.1| microprocessor complex subunit DGCR8 [Danio rerio] gi|122890881|emb|CAM13120.1| novel protein [Danio rerio] Length = 782 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 517 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVIIDGVTYGTGTASSKKLAK 574 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 575 NKAARATLE 583 >gi|298256121|gb|ADI71339.1| RNase III-like protein [Pike-perch iridovirus] Length = 225 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 62/192 (32%), Gaps = 25/192 (13%) Query: 50 ILGLLISTLLFNHFDSAKEG----ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 + + F ++ S ++ S +A L FIR S Sbjct: 2 VASYFFPSYFLKRFPQLNSPKGVKTVARLKIYYGSKKSFSSIADSLGFWKFIR--SGPVP 59 Query: 106 DVCSFMTSIQADVVESLIAA--------LYLDG-GIEVAGTFVDKYWKQRALKSG-KFRR 155 S S+ D E+ + A +DG G VA + + + Sbjct: 60 VNPSTRESLLEDTFEAFLGAVCMAVDDEYSIDGLGAVVAYKIMADIFDDMDISLEYTALF 119 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQV 214 D T L+E K V V G T V+ + G + KR A++ Sbjct: 120 DTVTRLKELMDVKKDVLGGDAVYDHRGD------TTVITLKGRVIGKATGAIKRDRAKEA 173 Query: 215 A--AAEVLKREG 224 A A ++L+REG Sbjct: 174 AGQALDLLRREG 185 >gi|298256115|gb|ADI71336.1| RNase III-like protein [European catfish virus] gi|298256117|gb|ADI71337.1| RNase III-like protein [Epizootic haematopoietic necrosis virus] gi|298256119|gb|ADI71338.1| RNase III-like protein [European sheatfish virus] Length = 225 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 62/192 (32%), Gaps = 25/192 (13%) Query: 50 ILGLLISTLLFNHFDSAKEG----ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 + + F ++ S ++ S +A L FIR S Sbjct: 2 VASYFFPSYFLKRFPQLNSPKGVKTVARLKIYYGSKKSFSSIADSLGFWKFIR--SGPVP 59 Query: 106 DVCSFMTSIQADVVESLIAA--------LYLDG-GIEVAGTFVDKYWKQRALKSG-KFRR 155 S S+ D E+ + A +DG G VA + + + Sbjct: 60 VNPSTRESLLEDTFEAFLGAVCTAVDDEYSIDGLGAVVAYKIMADIFDDMDISLEYTALF 119 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQV 214 D T L+E K V V G T V+ + G + KR A++ Sbjct: 120 DTVTRLKELMDVKKDVLGGDAVYDHRGD------TTVITLKGRVIGKATGAIKRDRAKEA 173 Query: 215 A--AAEVLKREG 224 A A ++L+REG Sbjct: 174 AGQALDLLRREG 185 >gi|41152099|ref|NP_201581.2| microprocessor complex subunit DGCR8 [Mus musculus] gi|50403798|sp|Q9EQM6|DGCR8_MOUSE RecName: Full=Microprocessor complex subunit DGCR8; AltName: Full=DiGeorge syndrome critical region 8 homolog; AltName: Full=Gy1 gi|38566065|gb|AAH62919.1| DiGeorge syndrome critical region gene 8 [Mus musculus] gi|40645099|dbj|BAD06468.1| Dgcr8 protein [Mus musculus] gi|42490933|gb|AAH66118.1| DiGeorge syndrome critical region gene 8 [Mus musculus] gi|117646832|emb|CAL37531.1| hypothetical protein [synthetic construct] gi|148665096|gb|EDK97512.1| DiGeorge syndrome critical region gene 8, isoform CRA_a [Mus musculus] gi|148665099|gb|EDK97515.1| DiGeorge syndrome critical region gene 8, isoform CRA_a [Mus musculus] Length = 773 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 566 NKAARATLE 574 >gi|38488720|ref|NP_073557.3| microprocessor complex subunit DGCR8 isoform 1 [Homo sapiens] gi|114685149|ref|XP_001167363.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 5 [Pan troglodytes] gi|114685151|ref|XP_001167389.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 6 [Pan troglodytes] gi|114685153|ref|XP_001167420.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 7 [Pan troglodytes] gi|23813990|sp|Q8WYQ5|DGCR8_HUMAN RecName: Full=Microprocessor complex subunit DGCR8; AltName: Full=DiGeorge syndrome critical region 8 gi|18147097|dbj|BAB83032.1| DGCR8 protein [Homo sapiens] gi|47678243|emb|CAG30242.1| Em:AC006547.4 [Homo sapiens] gi|109451272|emb|CAK54497.1| DGCR8 [synthetic construct] gi|109451850|emb|CAK54796.1| DGCR8 [synthetic construct] gi|119623403|gb|EAX02998.1| DiGeorge syndrome critical region gene 8, isoform CRA_a [Homo sapiens] gi|168279077|dbj|BAG11418.1| DiGeorge syndrome critical region gene 8 [synthetic construct] Length = 773 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 566 NKAARATLE 574 >gi|297708300|ref|XP_002830907.1| PREDICTED: microprocessor complex subunit DGCR8-like isoform 1 [Pongo abelii] gi|297708302|ref|XP_002830908.1| PREDICTED: microprocessor complex subunit DGCR8-like isoform 2 [Pongo abelii] Length = 773 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 566 NKAARATLE 574 >gi|332634877|ref|NP_001193848.1| DiGeorge syndrome critical region gene 8 [Sus scrofa] Length = 773 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 566 NKAARATLE 574 >gi|302565592|ref|NP_001181679.1| microprocessor complex subunit DGCR8 [Macaca mulatta] gi|297260575|ref|XP_002798321.1| PREDICTED: microprocessor complex subunit DGCR8-like isoform 2 [Macaca mulatta] Length = 773 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 566 NKAARATLE 574 >gi|332262731|ref|XP_003280412.1| PREDICTED: microprocessor complex subunit DGCR8-like isoform 1 [Nomascus leucogenys] Length = 773 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 566 NKAARATLE 574 >gi|298256125|gb|ADI71341.1| RNase III-like protein [Rana esculenta virus] Length = 225 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 63/192 (32%), Gaps = 25/192 (13%) Query: 50 ILGLLISTLLFNHFDSAKEG----ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 + + F ++ S ++ S +A L FIR S Sbjct: 2 VASYFFPSYFLKRFPQLNSPKGVKTVARLKIYYGSKKSFSSIADSLGFWKFIR--SGPVP 59 Query: 106 DVCSFMTSIQADVVESLIAA--------LYLDG-GIEVAGTFVDKYWKQRALKSG-KFRR 155 S S+ D E+ + A +DG G VA + + + Sbjct: 60 VNPSTRESLLEDTFEAFLGAVCMAVDDEYSIDGLGAVVAYKIMADIFDDMDISLEYTALF 119 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQV 214 D T L+E K V V SG T ++ + G + KR A++ Sbjct: 120 DTVTRLKELMDVKKDVLGGDAVYNHSGD------TTIITLKGRVIGKATGAIKRDRAKEA 173 Query: 215 A--AAEVLKREG 224 A A ++L+REG Sbjct: 174 AGQALDLLRREG 185 >gi|226958738|ref|NP_001153011.1| DiGeorge syndrome critical region gene 8 [Xenopus (Silurana) tropicalis] gi|169261414|gb|ACA52287.1| DiGeorge syndrome critical region 8 [Xenopus tropicalis] Length = 772 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 507 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVIIDGVTYGTGTASSKKLAK 564 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 565 NKAARATLE 573 >gi|126304888|ref|XP_001373897.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 495 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 K L EW + P Y+ R D F VV +S D SK+ AEQ A Sbjct: 368 PKMCLLEWCRKEKLAQPVYETIQR---PVDRLFCSVVTVSERKYRSALWDKSKKLAEQAA 424 Query: 216 AAEVLKREGI 225 A L+ G+ Sbjct: 425 AIVCLRSLGL 434 >gi|74222039|dbj|BAE26840.1| unnamed protein product [Mus musculus] Length = 308 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 76/234 (32%), Gaps = 29/234 (12%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQ-----------------ESYERLEFLGDRILGLL 54 R+ F+ LL+ A +S S + + + L G Sbjct: 53 RLQETFS-LDLLKTAFINSCYIKSEEAKRQSLGIEKEAALLNLKDNQELFEQGLSFSHRC 111 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ++ L + F + L VAR L + + +S++ + + Sbjct: 112 LTQFLEDEFPDLPAEGTESLVSFLTGEAVVCHVARNLAVEQ-LTLSAEFPVPLP-----V 165 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHAKFG 170 ++I AL G E A F+ + + F + L E + Sbjct: 166 LRQTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWTVVNPMGLLVEELKKRNI 225 Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 226 SAPESRLTRQSGSTTALPLYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKL 279 >gi|224146029|ref|XP_002325853.1| predicted protein [Populus trichocarpa] gi|222862728|gb|EEF00235.1| predicted protein [Populus trichocarpa] Length = 291 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + P Y T +SG H P F VEI G++ +K+ AE AA Sbjct: 234 REGCGFPTY-CTEKSGEAHAPTFISTVEIDGVSFTGKEARTKKQAEMSAAKIA 285 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVA 215 K+ LQ H + P Y+VT + G DH P F+ V ++ + S + A+ A Sbjct: 2 YKSNLQAVCHQRGWELPAYQVTKQ-GQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSDA 60 Query: 216 AAEV 219 A Sbjct: 61 AKLA 64 >gi|296191370|ref|XP_002806593.1| PREDICTED: LOW QUALITY PROTEIN: microprocessor complex subunit DGCR8-like [Callithrix jacchus] Length = 773 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 566 NKAARATLE 574 >gi|291413067|ref|XP_002722795.1| PREDICTED: DiGeorge syndrome critical region gene 8 [Oryctolagus cuniculus] Length = 773 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 566 NKAARATLE 574 >gi|307178016|gb|EFN66877.1| Protein DGCR8 [Camponotus floridanus] Length = 643 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 12/93 (12%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 D G A ++ + L E+ P YK F+ + Sbjct: 346 DNGQRPAKHWI----------MNPSGKSYVCILHEYVQHALKKQPTYK--FKELENAATP 393 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++ VV I+ + G SK+ A+ AA + L+ Sbjct: 394 YSAVVCINDMEYGSGFGSSKKQAKANAARKTLE 426 >gi|322787500|gb|EFZ13588.1| hypothetical protein SINV_13344 [Solenopsis invicta] Length = 1224 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 12/93 (12%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 D G A ++ + L E+ P YK F+ + Sbjct: 927 DNGQRPAKHWI----------MNPSGKSYVCILHEYVQHALKKQPTYK--FKELENAATP 974 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++ VV I+ + G SK+ A+ AA + L+ Sbjct: 975 YSAVVCINDMEYGSGFGSSKKQAKANAARKTLE 1007 >gi|76156576|gb|AAX27760.2| SJCHGC04824 protein [Schistosoma japonicum] Length = 334 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 78/234 (33%), Gaps = 27/234 (11%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS-----------HSYQESYERLEFLGDRILGL 53 + RIG ++ L+E +T S + ++ ++ L G I Sbjct: 55 ELTAFLSRIGEKI-DKDLIEVIMTDQSYTSFWSVEKSKSINNIMQNNIELANFGFSITEN 113 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF--- 110 +S L + + E ++ L S + +A L + + S + Sbjct: 114 FLSAFLRSVYSHFPEEWITTIVQYLKSTSELAFIAGHLGIKDIVLYSDQVDYSSTKIISA 173 Query: 111 --MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEW 164 I A+V+ +L+ AL D +E A F+ + R + LQ Sbjct: 174 PPNPDILANVLMALVGALAKDK-VERAHLFIRDFILARLTDLDLTELISIPEPLPLLQGI 232 Query: 165 AHAKFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVA 215 ++ PE ++ ++S + F V + + + AEQ A Sbjct: 233 LKSEGRGPPETRLLYQS--SMNTVLACFQVGIYSDRQLIGEAPGETLLIAEQEA 284 >gi|209154768|gb|ACI33616.1| Interleukin enhancer-binding factor 3 homolog [Salmo salar] Length = 683 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SKR A+ A +VL+ G+ T Sbjct: 412 QLKPGLQYKLLSQTGPVHVPVFTMAVEVDGKS-FEASGPSKRTAKLHVAVKVLQDMGLPT 470 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VEI QG + Sbjct: 527 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEIDEQK-FQGTGSN 578 >gi|213511536|ref|NP_001135193.1| interleukin enhancer-binding factor 3 homolog [Salmo salar] gi|209152728|gb|ACI33127.1| Interleukin enhancer-binding factor 3 homolog [Salmo salar] Length = 843 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + +YK+ ++GP H P FT+ VE+ G + + SKR A+ A +VL+ G+ T Sbjct: 412 QLKPGLQYKLLSQTGPVHVPVFTMAVEVDGKS-FEASGPSKRTAKLHVAVKVLQDMGLPT 470 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VEI QG + Sbjct: 527 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEIDEQK-FQGTGSN 578 >gi|195430156|ref|XP_002063122.1| GK21754 [Drosophila willistoni] gi|194159207|gb|EDW74108.1| GK21754 [Drosophila willistoni] Length = 1401 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213 D K+ L E+ +K P+++V +GP H RF V + + A G +K+ AE+ Sbjct: 1 MDIKSFLFEYC-SKNHTEPKFEV-RPTGPKHRQRFLCEVRVEKCSYVAVGNSTNKKDAEK 58 Query: 214 VAAAEV---LKREG 224 A+ + L R G Sbjct: 59 NASRDFVNYLVRMG 72 Score = 38.1 bits (88), Expect = 0.89, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210 +AK L + A +YK T GPDH F + I A+ +K++ Sbjct: 183 NAKDRLNIYKQANNIRD-DYKYTPV-GPDHARSFMAELSIFVPALKRKVTARNTGSNKKS 240 Query: 211 AEQVAAAEVLKRE 223 A + A ++++ Sbjct: 241 ASKSCALSLVRQL 253 >gi|240848923|ref|NP_001155644.1| protein kinase, interferon inducible double stranded RNA dependent activator-like [Acyrthosiphon pisum] gi|239790447|dbj|BAH71784.1| ACYPI005748 [Acyrthosiphon pisum] Length = 339 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +L + PE+ + G H FT+ ++ +K+ A+ +AA ++ Sbjct: 123 QLNDICTNNKLGLPEFNLVREEGQAHAKLFTISCHVA-KMIETATHKTKKQAKHLAAVQM 181 Query: 220 LKRE 223 + + Sbjct: 182 VNKL 185 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + +QE+A AK + P+Y + +G H F + + A G SK+ A+ VAA Sbjct: 25 SIVQEYA-AKNRLVPQYDLIH-NGVSHSKVSFKYSLTLDDYV-AVGDGSSKKEAKHVAAL 81 Query: 218 EVLK 221 +LK Sbjct: 82 NLLK 85 >gi|149758673|ref|XP_001488087.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8 [Equus caballus] Length = 773 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 566 NKAARATLE 574 >gi|149412383|ref|XP_001508965.1| PREDICTED: similar to 65 kD protein kinase [Ornithorhynchus anatinus] Length = 546 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 L E+ + Y+ ++GPDH+ +FT+ V I G + S Sbjct: 14 LHEYCQKRGLKL-VYRDVSKTGPDHNLQFTIQVIIEGREFPEASGSS 59 >gi|158341217|ref|YP_001522419.1| hypothetical protein AM1_F0115 [Acaryochloris marina MBIC11017] gi|158311458|gb|ABW33069.1| hypothetical protein AM1_F0115 [Acaryochloris marina MBIC11017] Length = 157 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 8/80 (10%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS-GPDHDPRFTVVVEISGLAPAQ 202 Q + + ++ +LQE + P Y+ + S G F +V+ GL Sbjct: 72 DQPISQVDEQVKNPIGQLQELCQKQQISLPRYEFSEISEG------FRCLVQSMGLQ-GV 124 Query: 203 GMDCSKRAAEQVAAAEVLKR 222 G SK+ A+ AA +LKR Sbjct: 125 GEGASKKKAKMGAAEMLLKR 144 >gi|300863100|ref|NP_001025431.2| 39S ribosomal protein L44, mitochondrial [Danio rerio] Length = 332 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 11/173 (6%) Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S N F + + ++ L +E VAR L + + +S++ I Sbjct: 136 SDWCKNSFPNLPDEGVAAIAGHLTGSEVICHVARNLAVEE-LTMSAEFPVP-----DHIL 189 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHAKFGV 171 ++I AL G AG F+ + + + F D L E K Sbjct: 190 QGTFFAVIGALEQSSGPVRAGLFIRDFLVTQLIGKDLFDMWKVVDPMGLLVEELTRKGVA 249 Query: 172 TPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++ +G P + V + AQG + AE+ AA L++ Sbjct: 250 LPEPRLIRSAGASTVLPLYFVGLYSDRKLLAQGPGETVLIAEEEAARVALRKL 302 >gi|148665098|gb|EDK97514.1| DiGeorge syndrome critical region gene 8, isoform CRA_c [Mus musculus] Length = 588 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 323 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 380 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 381 NKAARATLE 389 >gi|126631560|gb|AAI33991.1| Zgc:114114 protein [Danio rerio] Length = 332 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 11/173 (6%) Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S N F + + ++ L +E VAR L + + +S++ I Sbjct: 136 SDWCKNSFPNLPDEGVAAIAGHLTGSEVICHVARNLAVEE-LTMSAEFPVP-----DHIL 189 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHAKFGV 171 ++I AL G AG F+ + + + F D L E K Sbjct: 190 QGTFFAVIGALEQSSGPVRAGLFIRDFLVTQLIGKDLFDMWKVVDPMGLLVEELTRKGVA 249 Query: 172 TPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++ +G P + V + AQG + AE+ AA L++ Sbjct: 250 LPEPRLIRSAGASTVLPLYFVGLYSDRKLLAQGPGETVLIAEEEAARVALRKL 302 >gi|312377844|gb|EFR24577.1| hypothetical protein AND_10726 [Anopheles darlingi] Length = 199 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K+ W V P ++V +GP H RF V + G G+ S K+ +E+ Sbjct: 3 DMKSFFMIWCQKNV-VEPSFEV-RPTGPKHRQRFLCEVRLPGYNY-TGVGNSTNKKDSEK 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 >gi|242023479|ref|XP_002432161.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517543|gb|EEB19423.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 652 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+ L E+ P Y TF+ + + VV I + G+ SK+ A+ Sbjct: 375 NGKSYVCILHEYVQRALKDQPVY--TFKELENTATPYLAVVSIGNIQYGTGVGSSKKQAK 432 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 433 HDAAKATLE 441 >gi|115680274|ref|XP_001190439.1| PREDICTED: similar to tRNA-dihydrouridine synthase [Strongylocentrotus purpuratus] gi|115717831|ref|XP_001201154.1| PREDICTED: similar to tRNA-dihydrouridine synthase [Strongylocentrotus purpuratus] Length = 499 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 K L E+ HAK P Y + + F V + A SK+ +EQ A Sbjct: 327 FKGVLIEYCHAKKLHPPHYTLEEDI---ENRVFRSSVIVDDQEYATTLWCTSKKYSEQGA 383 Query: 216 AAEVLKREGI 225 AA ++ G+ Sbjct: 384 AAVCCQQLGL 393 >gi|51342212|gb|AAU01256.1| MPXV-WRAIR046 [Monkeypox virus] gi|58220516|gb|AAW67804.1| MPXV-SL-046 [Monkeypox virus] gi|59858852|gb|AAX09147.1| MPXV-COP-046 [Monkeypox virus] gi|68448726|gb|AAY96849.1| double-stranded RNA binding protein [Monkeypox virus] gi|68449329|gb|AAY97449.1| double-stranded RNA binding protein [Monkeypox virus] gi|68449528|gb|AAY97647.1| double-stranded RNA binding protein [Monkeypox virus] Length = 153 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ +++ GP + P F V+I G + SKR A+ A Sbjct: 80 NPVTVINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 137 Query: 216 AAEVLKRE 223 A + + Sbjct: 138 AKLAVDKL 145 >gi|17974965|ref|NP_536479.1| F3L [Monkeypox virus Zaire-96-I-16] gi|17529832|gb|AAL40510.1|AF380138_52 F3L [Monkeypox virus Zaire-96-I-16] gi|68448928|gb|AAY97050.1| double-stranded RNA binding protein [Monkeypox virus] gi|68449129|gb|AAY97250.1| double-stranded RNA binding protein [Monkeypox virus] gi|300872673|gb|ADK39075.1| double-stranded RNA binding protein [Monkeypox virus] gi|323098461|gb|ADX22699.1| double-stranded RNA binding protein [Monkeypox virus] gi|323098658|gb|ADX22895.1| double-stranded RNA binding protein [Monkeypox virus] Length = 153 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ +++ GP + P F V+I G + SKR A+ A Sbjct: 80 NPVTVINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 137 Query: 216 AAEVLKRE 223 A + + Sbjct: 138 AKLAVDKL 145 >gi|195505492|ref|XP_002099528.1| GE10954 [Drosophila yakuba] gi|194185629|gb|EDW99240.1| GE10954 [Drosophila yakuba] Length = 643 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+ L E+ P Y+ F+ + ++ V ++ L G SK+ A+ Sbjct: 367 NGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSATVSVNNLKYGTGYGTSKKQAK 424 Query: 213 QVAAAEVLK 221 AA E L+ Sbjct: 425 SEAARETLE 433 >gi|195036498|ref|XP_001989707.1| GH18644 [Drosophila grimshawi] gi|193893903|gb|EDV92769.1| GH18644 [Drosophila grimshawi] Length = 654 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+ L E+ P Y+ F+ + ++ V ++ L G SK+ A+ Sbjct: 378 NGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSATVSVNNLKYGTGYGTSKKQAK 435 Query: 213 QVAAAEVLK 221 AA E L+ Sbjct: 436 SEAARETLE 444 >gi|74151695|dbj|BAE29642.1| unnamed protein product [Mus musculus] gi|74199060|dbj|BAE30743.1| unnamed protein product [Mus musculus] Length = 292 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 76/234 (32%), Gaps = 29/234 (12%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQ-----------------ESYERLEFLGDRILGLL 54 R+ F+ LL+ A +S S + + + L G Sbjct: 37 RLQETFS-LDLLKTAFINSCYIKSEEAKRQSLGIEKEAALLNLKDNQELFEQGLSFSHRC 95 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ++ L + F + L VAR L + + +S++ + + Sbjct: 96 LTQFLEDEFPDLPAEGTESLVSFLTGEAVVCHVARNLAVEQ-LTLSAEFPVPLP-----V 149 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHAKFG 170 ++I AL G E A F+ + + F + L E + Sbjct: 150 LRQTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWTVVNPMGLLVEELKKRNI 209 Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 210 SAPESRLTRQSGSTTALPLYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKL 263 >gi|320590885|gb|EFX03328.1| 60S ribosomal protein l3 [Grosmannia clavigera kw1407] Length = 471 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 44/138 (31%), Gaps = 10/138 (7%) Query: 88 ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147 A LDL S A+ V ++ A+Y GG E FV + R Sbjct: 304 ASALDLG-----GSMDAGTKTRIADDAHANFVRAVAGAVYAHGGREPVRAFVRAHVLSRQ 358 Query: 148 LKSGKFRRDAK---TELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQG 203 L + R K EL + P ++ +G P F V + +G Sbjct: 359 LDLERLFR-FKLPTRELAYLCARENFEPPVARLEAETGRQSRTPVFVVGIYSGNDKLGEG 417 Query: 204 MDCSKRAAEQVAAAEVLK 221 S A AA LK Sbjct: 418 AAASLDHARAKAAMNSLK 435 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 3/92 (3%) Query: 3 ALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + + + L R+G + L L +AL +S S + + L +LG ++ +S L Sbjct: 127 SAKLAALHARLGLS-QRLPLETLARALVDTSADPSLRFNNASLAYLGATLIHYHVSEWLM 185 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELD 92 + L + + + VA + Sbjct: 186 CRYPRLPMVILYAAMKAYAGPQALADVAHQWG 217 >gi|158339696|ref|YP_001520703.1| hypothetical protein AM1_A0044 [Acaryochloris marina MBIC11017] gi|158309937|gb|ABW31553.1| hypothetical protein AM1_A0044 [Acaryochloris marina MBIC11017] Length = 157 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 8/80 (10%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS-GPDHDPRFTVVVEISGLAPAQ 202 Q + + ++ +LQE + P Y+ + S G F +V+ GL Sbjct: 72 DQPISQVDEQVKNPIGQLQELCQKQQISLPRYEFSEISEG------FRCLVQSMGLQ-GV 124 Query: 203 GMDCSKRAAEQVAAAEVLKR 222 G SK+ A+ AA +LKR Sbjct: 125 GEGASKKKAKMGAAEMLLKR 144 >gi|224159933|ref|XP_002338148.1| predicted protein [Populus trichocarpa] gi|222871054|gb|EEF08185.1| predicted protein [Populus trichocarpa] Length = 83 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 K++LQ+ + + P +VT G +H P F V + + + S + A+ A Sbjct: 2 YKSKLQQLSQQRGWEIPTSEVTKE-GQEHSPLFYATVTVDATLFSTPLPSSSSKEAQNAA 60 Query: 216 AAEV 219 A + Sbjct: 61 AKQA 64 >gi|39645186|gb|AAH09323.2| DGCR8 protein [Homo sapiens] Length = 517 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 252 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 309 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 310 NKAARATLE 318 >gi|52546044|emb|CAE46205.2| hypothetical protein [Homo sapiens] Length = 492 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 227 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 284 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 285 NKAARATLE 293 >gi|155372129|ref|NP_001094674.1| microprocessor complex subunit DGCR8 [Bos taurus] gi|259645217|sp|A6QR44|DGCR8_BOVIN RecName: Full=Microprocessor complex subunit DGCR8; AltName: Full=DiGeorge syndrome critical region 8 homolog gi|151554704|gb|AAI50110.1| DGCR8 protein [Bos taurus] gi|296478289|gb|DAA20404.1| DiGeorge syndrome critical region gene 8 [Bos taurus] Length = 760 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 495 NGKSEVCILHEYMQRVLKVRPVYSFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 552 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 553 NKAARATLE 561 >gi|321457593|gb|EFX68676.1| hypothetical protein DAPPUDRAFT_329837 [Daphnia pulex] Length = 120 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLIS-TLLFNHFDSA 66 E+ + Y F ++ +L +ALT +S + +Y+RLE +GD L L + Sbjct: 55 FEEVLSYTFNDKEVLLEALT---YGNSIRSLNYQRLEVIGDAALEFLAALQFFKQSSLYH 111 Query: 67 KEGELSVRF 75 G++S Sbjct: 112 SAGDISQLR 120 >gi|119623404|gb|EAX02999.1| DiGeorge syndrome critical region gene 8, isoform CRA_b [Homo sapiens] Length = 490 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 225 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 282 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 283 NKAARATLE 291 >gi|114685161|ref|XP_001167301.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 3 [Pan troglodytes] Length = 489 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 224 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 281 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 282 NKAARATLE 290 >gi|10438086|dbj|BAB15165.1| unnamed protein product [Homo sapiens] Length = 490 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 225 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 282 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 283 NKAARATLE 291 >gi|301770469|ref|XP_002920627.1| PREDICTED: microprocessor complex subunit DGCR8-like [Ailuropoda melanoleuca] Length = 773 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 566 NKAARATLE 574 >gi|158323833|gb|ABW34420.1| RNase3 class I protein [Sweet potato chlorotic stunt virus] Length = 228 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 15/153 (9%) Query: 37 QESYERLEFLGDRILGLLISTLLFNHFD-SAKEGELSVRFNSLVSAETCSQVARELDLAS 95 E ++ E LGD + ++++L + F A LS+ +S ++V E Sbjct: 33 SEDRDKYEILGDWAITTYVTSMLTDLFKHDADAESLSLLRAHNISNFMFAKVMVESRFYE 92 Query: 96 ------------FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 R++ K+V A+ E ++ L ++ E F+D + Sbjct: 93 DFSIWLTPDQLQLCRMTFGGGKNVYEVNVKFLANYFERVVGWLVINDSSESIKMFLDLFL 152 Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 K L S + ++ A++ LQEWA Y Sbjct: 153 KP--LMSFRIKKPARSILQEWAVKNNKRLDIYT 183 >gi|21357163|ref|NP_651879.1| partner of drosha [Drosophila melanogaster] gi|7302074|gb|AAF57175.1| partner of drosha [Drosophila melanogaster] gi|16197965|gb|AAL13753.1| LD23072p [Drosophila melanogaster] gi|220945782|gb|ACL85434.1| pasha-PA [synthetic construct] gi|220955486|gb|ACL90286.1| pasha-PA [synthetic construct] Length = 642 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+ L E+ P Y+ F+ + ++ V ++ L G SK+ A+ Sbjct: 366 NGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSATVSVNNLKYGTGYGTSKKQAK 423 Query: 213 QVAAAEVLK 221 AA E L+ Sbjct: 424 SEAARETLE 432 >gi|296087343|emb|CBI33717.3| unnamed protein product [Vitis vinifera] Length = 286 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 10/147 (6%) Query: 18 ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + YERLE++G +I ++++ L A L Sbjct: 140 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQ 199 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFMTSIQADVVESLIAALYL 128 + L+ + C + R+ L FI S + + V +++ YL Sbjct: 200 EKHRRLLMNKFCGRYLRDKYLHRFIIYSEQVQDSYEHNRRLRNPAT-TAVQQAIHGLSYL 258 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR 155 G + + + ++ R Sbjct: 259 VYGKPDVRRLMFEVFDFEQIQPKPVLR 285 >gi|170574540|ref|XP_001892859.1| Double-stranded RNA binding motif family protein [Brugia malayi] gi|158601386|gb|EDP38310.1| Double-stranded RNA binding motif family protein [Brugia malayi] Length = 369 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 8/96 (8%) Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 A + K ++ + KT L + Y+ GP + F Sbjct: 93 AAKDMLKKMIEKESFSDFGLG---KTKEEALANLCQKLKLLNATYE-IDEEGPTNQRIFI 148 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 + G +K+ A+ +AA ++ + W Sbjct: 149 ATCTV-GKIHVVAHGKTKKIAKTLAAQKMCTQLENW 183 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F E+ G+ G +K+ A+Q+AA ++LK+ Sbjct: 68 FATRCELYGI-YTMGYGRTKKIAKQMAAKDMLKKM 101 >gi|332022933|gb|EGI63201.1| Microprocessor complex subunit DGCR8 [Acromyrmex echinatior] Length = 650 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 12/93 (12%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 D G A ++ + L E+ P YK F+ + Sbjct: 353 DNGQRPAKHWI----------MNPSGKSYVCILHEYVQHALKKQPTYK--FKELENAATP 400 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++ VV I+ + G SK+ A+ AA + L+ Sbjct: 401 YSAVVCINDMEYGSGFGSSKKQAKANAARKTLE 433 >gi|281353794|gb|EFB29378.1| hypothetical protein PANDA_009401 [Ailuropoda melanoleuca] Length = 753 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 566 NKAARATLE 574 >gi|62897151|dbj|BAD96516.1| DiGeorge syndrome critical region gene 8 variant [Homo sapiens] Length = 570 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 305 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 362 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 363 NKAARATLE 371 >gi|218194135|gb|EEC76562.1| hypothetical protein OsI_14382 [Oryza sativa Indica Group] Length = 176 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 9/146 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +TL+ +I Y F LL +A+TH+S S + L LG + Sbjct: 34 LATLQNQIAYRFHAPDLLRRAMTHASYSRENGRA---LAVLGLAASQSAAALRALAADHD 90 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A +S R C A + + S +RV++ + + + +LI A Sbjct: 91 ASASPVSRRARDASGEAACVAAAARVGIPSIVRVAAGTKPTA----PPVVCGALRALIGA 146 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG 151 + +D A V +WK L + Sbjct: 147 VAVDANSTHAAEEV--FWKLHVLTAA 170 >gi|194904820|ref|XP_001981066.1| GG11821 [Drosophila erecta] gi|190655704|gb|EDV52936.1| GG11821 [Drosophila erecta] Length = 642 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+ L E+ P Y+ F+ + ++ V ++ L G SK+ A+ Sbjct: 366 NGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSATVSVNNLKYGTGYGTSKKQAK 423 Query: 213 QVAAAEVLK 221 AA E L+ Sbjct: 424 SEAARETLE 432 >gi|225679540|gb|EEH17824.1| 60S ribosomal protein L3 [Paracoccidioides brasiliensis Pb03] Length = 394 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 83/266 (31%), Gaps = 60/266 (22%) Query: 1 MSALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 +++ + + L R+ L L + L S+ S Q + + L LG +L S Sbjct: 80 LNSPKLAALHARLSL-PRRLPLQTLARTLVDESVDPSPQFNNKSLSILGGDLLTYYTSEH 138 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL------------------------- 93 L + + L S + A+ + + RE L Sbjct: 139 LISTYPRLPIKVLWAAMYSYIGAKPLAAMTREWGLEFIADPGAEVDPGFLQFKRLPPDTE 198 Query: 94 ------ASFIRVSSDLRKD--------VCSFMTSIQ---------------ADVVESLIA 124 +F+R +L K +F S A+ V +++ Sbjct: 199 VKTNANGTFLRPDGNLSKRSTSARIIYGDAFGESALPYPVQYEGVTPNRACANFVRAVMG 258 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL G A F +++ R L R +L + + P K+ +G Sbjct: 259 AVYLHAGRPAAKLFFKEHFMSRYLNMASLFSFRQPTRDLSKLCRREGFEDPVAKILSETG 318 Query: 183 P-DHDPRFTVVVEISGLAPAQGMDCS 207 + P F V + +G S Sbjct: 319 RLSNRPVFNVGIFSGPDKLGEGAGGS 344 >gi|240278441|gb|EER41947.1| conserved hypothetical protein [Ajellomyces capsulatus H143] Length = 141 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 11/131 (8%) Query: 8 TLEKRIGYAFANRSLLEKAL-THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +EK GY F N SL KAL T + Q+S L +GD L L + T+ + A Sbjct: 14 EIEKATGYTFTNPSLCLKALQTAGCAAAGGQKS---LAQVGDAALRLALVTIGYGK--GA 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 G++ + S + E + R + A V++++ A+ Sbjct: 69 SRGQIDSALRTKASNSHLADQGFERGFDGCVY-----RIGGVDVSMKMMATAVQAVLGAV 123 Query: 127 YLDGGIEVAGT 137 +LD + + Sbjct: 124 FLDCNKNIYRS 134 >gi|166796315|gb|AAI59182.1| dgcr8 protein [Xenopus (Silurana) tropicalis] Length = 550 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 285 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVIIDGVTYGTGTASSKKLAK 342 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 343 NKAARATLE 351 >gi|158339712|ref|YP_001520718.1| hypothetical protein AM1_A0060 [Acaryochloris marina MBIC11017] gi|158309953|gb|ABW31569.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 157 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 6/71 (8%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SG + LQE + P Y+ F + P+ F V+ GL G SK+ Sbjct: 78 SGDVVENPIGTLQELCQRQQISMPSYE--FETIPEG---FRCSVQAMGLR-GVGEGVSKK 131 Query: 210 AAEQVAAAEVL 220 A+ AA ++L Sbjct: 132 KAKMGAARKLL 142 >gi|68053231|sp|Q9CY73|RM44_MOUSE RecName: Full=39S ribosomal protein L44, mitochondrial; Short=L44mt; Short=MRP-L44; Flags: Precursor Length = 333 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 76/234 (32%), Gaps = 29/234 (12%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQ-----------------ESYERLEFLGDRILGLL 54 R+ F+ LL+ A +S S + + + L G Sbjct: 78 RLQETFS-LDLLKTAFINSCYIKSEEAKRQSLGIEKEAALLNLKDNQELFEQGLSFSHRC 136 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ++ L + F + L VAR L + + +S++ + + Sbjct: 137 LTQFLEDEFPDLPAEGTESLVSFLTGEAVVCHVARNLAVEQ-LTLSAEFPVPLP-----V 190 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHAKFG 170 ++I AL G E A F+ + + F + L E + Sbjct: 191 LRQTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWPVVNPMGLLVEELKKRDI 250 Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 251 SAPESRLTRQSGSTTALPLYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKL 304 >gi|328722856|ref|XP_001948677.2| PREDICTED: microprocessor complex subunit DGCR8-like [Acyrthosiphon pisum] Length = 472 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 8/70 (11%) Query: 155 RDAKTELQEWAHAKFGVTPEYK---VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 + + L E+ P Y+ + P + V + G+ G+ SK+ A Sbjct: 229 KSYVSILHEYIQRVLKTQPSYEFKELENARYP-----YLATVILDGMQYGIGIGSSKKQA 283 Query: 212 EQVAAAEVLK 221 + AA L+ Sbjct: 284 KLDAARATLE 293 >gi|298256123|gb|ADI71340.1| RNase III-like protein [Ranavirus maxima/9995205/DNK] Length = 225 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 61/192 (31%), Gaps = 25/192 (13%) Query: 50 ILGLLISTLLFNHFDSAKEG----ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 + + F ++ S ++ S +A L FIR S Sbjct: 2 VASYFFPSYFIKRFPQLNSPKGVKTVARLKIYYGSKKSFSSIADSLGFWKFIR--SGPVP 59 Query: 106 DVCSFMTSIQADVVESLIAA--------LYLDG-GIEVAGTFVDKYWKQRALKSG-KFRR 155 S S+ D E+ + A +DG G V + + + Sbjct: 60 VNPSTRESLLEDTFEAFLGAVCTAVDDEYSIDGLGAVVVYKIMADIFDNMDISLEYTALF 119 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQV 214 D T L+E K V V G T V+ + G + KR A++ Sbjct: 120 DTVTRLKELMDVKKDVLGGDAVYDHRGD------TTVITLKGRVIGKATGAIKRDRAKEA 173 Query: 215 A--AAEVLKREG 224 A A ++L+REG Sbjct: 174 AGQALDLLRREG 185 >gi|298256113|gb|ADI71335.1| RNase III-like protein [Cod iridovirus/15/04.11.92/DNK] Length = 225 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 61/192 (31%), Gaps = 25/192 (13%) Query: 50 ILGLLISTLLFNHFDSAKEG----ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 + + F ++ S ++ S +A L FIR S Sbjct: 2 VASYFFPSYFIKRFPQLNSPKGVKTVARLKIYYGSKKSFSSIADSLGFWKFIR--SGPVP 59 Query: 106 DVCSFMTSIQADVVESLIAA--------LYLDG-GIEVAGTFVDKYWKQRALKSG-KFRR 155 S S+ D E+ + A +DG G V + + + Sbjct: 60 VNPSTRESLLEDTFEAFLGAVCTAVDDEYSIDGLGAVVVYKIMADIFDNMDISLEYTALF 119 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQV 214 D T L+E K V V G T V+ + G + KR A++ Sbjct: 120 DTVTRLKELMDVKKDVLGGDAVYDHRGD------TTVITLKGRVIGKATGAIKRDRAKEA 173 Query: 215 A--AAEVLKREG 224 A A ++L+REG Sbjct: 174 AGQALDLLRREG 185 >gi|134287183|ref|YP_001110879.1| RNaseIII [Heliothis virescens ascovirus 3e] gi|133722091|gb|ABO37213.1| RNaseIII [Heliothis virescens ascovirus 3e] Length = 728 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 41/130 (31%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSA-----KEGELSVRFNSLVSAETCSQVARELDL 93 +YE E++GD ++ I + +++ G ++ + V S+ L L Sbjct: 207 NYEYFEYIGDSVVNRFIIDYIRDNYHGICNTAQNIGIMTKLRSIYVGKWNLSKCCVSLGL 266 Query: 94 ASFIR---VSSDLRK---------------------------------DVCSFMTSIQAD 117 +IR ++SD+RK +V S+ D Sbjct: 267 HRYIRSNNINSDVRKLQAYAHRSKRNAMSNTNQPKVNADSVYTDETAANVHRDTISLLED 326 Query: 118 VVESLIAALY 127 V+E+ + AL+ Sbjct: 327 VMEAFVGALW 336 >gi|169780854|ref|XP_001824891.1| RNase III domain protein [Aspergillus oryzae RIB40] gi|238504942|ref|XP_002383700.1| RNase III domain protein [Aspergillus flavus NRRL3357] gi|83773631|dbj|BAE63758.1| unnamed protein product [Aspergillus oryzae] gi|220689814|gb|EED46164.1| RNase III domain protein [Aspergillus flavus NRRL3357] Length = 255 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 54/144 (37%), Gaps = 21/144 (14%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN-------------------HFDS 65 A+TH S + +RL FLG RI+ L S + + Sbjct: 108 LAVTHKSFDQGRRGFNDRLAFLGRRIVELQASLAMVQSPGSAASTAAPDEFDRVPFTHPA 167 Query: 66 AKE-GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLI 123 + L+ N L+ +++A++ +L +R S + S + + A + +++ Sbjct: 168 LEGLENLTRHKNYLIGKAQLAELAQKYELQKVLRWSPRKPNNLASSGIELVLAHTMYAIV 227 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA 147 A+ L+ G VA + + Sbjct: 228 GAISLEKGGLVANKVTRERILEPL 251 >gi|292659036|gb|ADE34424.1| ORF80R [Turbot reddish body iridovirus] Length = 267 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 77/233 (33%), Gaps = 43/233 (18%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG-------E 70 N + TH S +H +YE E LGD I+ ++ F Sbjct: 39 KNTQVFHSVFTH-SKAHPVN-NYEWYEKLGDAIIASVMPQYYMERFPKLAHDPSATVART 96 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQADVVESLIAALYLD 129 +S + S T S +A+++ ++ + D E+++ A+ + Sbjct: 97 VSQLAITYQSGTTMSTIAQKMGFLKWVVAHRDGAAPASYKEQQRLLEDTFEAMVGAISIT 156 Query: 130 ---------GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT----PEY- 175 G F+ + ++ D K+ L+E V EY Sbjct: 157 MDDATGVKCSGHIACYRFLKYAYGLINMRLDGLI-DNKSMLKELIDMHSSVLDSFTFEYT 215 Query: 176 ----KVTFRSGPDHDPRFTV-VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +T G ++TV ++ L SKR E+V A +VL + Sbjct: 216 NNVMTLTVAQG-----KYTVSEANVNNL--------SKRELEKVLAGKVLAQL 255 >gi|195575342|ref|XP_002105638.1| GD21592 [Drosophila simulans] gi|194201565|gb|EDX15141.1| GD21592 [Drosophila simulans] Length = 642 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+ L E+ P Y+ F+ + ++ V ++ L G SK+ A+ Sbjct: 366 NGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSATVSVNNLKYGTGYGTSKKQAK 423 Query: 213 QVAAAEVLK 221 AA E L+ Sbjct: 424 SEAARETLE 432 >gi|170051834|ref|XP_001861946.1| R2D2 [Culex quinquefasciatus] gi|167872902|gb|EDS36285.1| R2D2 [Culex quinquefasciatus] Length = 314 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V PE++ SGP H P F + + +G+ +K+ A+QVA E+LK Sbjct: 107 CVQRNFEV-PEFECVRSSGPSHAPEFEFECRVGNIVR-RGVHNTKKGAKQVACNEMLK 162 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 7/68 (10%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDH---DPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 TELQE + P Y+ +G D+ F+ V G G SK+ ++ Sbjct: 12 PVTELQEICARRKVPLPIYE---SAGEDNSTPAKIFSTSVTALGQT-CVGHGRSKKDSKH 67 Query: 214 VAAAEVLK 221 AA +LK Sbjct: 68 AAALHMLK 75 >gi|195354476|ref|XP_002043723.1| GM16438 [Drosophila sechellia] gi|194128923|gb|EDW50966.1| GM16438 [Drosophila sechellia] Length = 642 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+ L E+ P Y+ F+ + ++ V ++ L G SK+ A+ Sbjct: 366 NGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSATVSVNNLKYGTGYGTSKKQAK 423 Query: 213 QVAAAEVLK 221 AA E L+ Sbjct: 424 SEAARETLE 432 >gi|70997880|ref|XP_753672.1| RNase III domain protein [Aspergillus fumigatus Af293] gi|66851308|gb|EAL91634.1| RNase III domain protein [Aspergillus fumigatus Af293] gi|159126595|gb|EDP51711.1| RNase III domain protein [Aspergillus fumigatus A1163] Length = 259 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 22/145 (15%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL------------- 71 A+TH S + +RL FLG RI+ L S L + +A Sbjct: 109 LAVTHKSFDQGRRGFNDRLAFLGKRIVQLQASLALVQNPGNASSSTTPDSFGREPFAHPA 168 Query: 72 --------SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESL 122 + + L S +++A++ +L +R S + S + + A + ++ Sbjct: 169 LEGLKNLSASTKSILTSKPKLAELAQKYELQKVLRWSPRKPNNLASSGIELVLAHTMYAI 228 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA 147 I A+ L+ G VA + + Sbjct: 229 IGAIALERGGHVANKVARERVLEPL 253 >gi|321457595|gb|EFX68678.1| hypothetical protein DAPPUDRAFT_329840 [Daphnia pulex] Length = 154 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLIS-TLLFNHFDSA 66 E+ + Y F ++ +L +ALT +S + +Y+RLE +GD L L + Sbjct: 89 FEEVLSYTFNDKEVLLEALT---YGNSIRSLNYQRLEVIGDAALEFLAALQFFKQSSLYH 145 Query: 67 KEGELSVRF 75 G++S Sbjct: 146 SAGDISQLR 154 >gi|195436531|ref|XP_002066221.1| GK22054 [Drosophila willistoni] gi|194162306|gb|EDW77207.1| GK22054 [Drosophila willistoni] Length = 1106 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++T GP H FTV +++ + A+ +AA++ ++ Sbjct: 369 QYRLTGERGPAHCKTFTVTLKLGDEEY-SADGFKIKKAQHLAASKAIE 415 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPA 201 K++ L+ + T+L + + P +++ ++G D R F + V +G + A Sbjct: 771 KEKLLEQLDDAENPITKLIQLQQNRKDKEPIFELIAKNGNDTSRRREFVMEVSANG-STA 829 Query: 202 QGMDCSKRAAEQV 214 +G SK+ A++ Sbjct: 830 RGTGNSKKLAKRN 842 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 K +T +KV GP H F + G +G K+ +++ +A ++L Sbjct: 661 KRSMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKISKKRSAEKML 712 >gi|195144392|ref|XP_002013180.1| GL23989 [Drosophila persimilis] gi|194102123|gb|EDW24166.1| GL23989 [Drosophila persimilis] Length = 387 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 5/80 (6%) Query: 145 QRALKSGKFRRDAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 RA K + K+ L E+ P Y+ F+ + ++ +V ++ L Sbjct: 101 PRARKEWIMNPNGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSAIVSVNNLKYG 158 Query: 202 QGMDCSKRAAEQVAAAEVLK 221 G SK+ A+ AA E L+ Sbjct: 159 TGYGTSKKQAKSEAARETLE 178 >gi|221129317|ref|XP_002161468.1| PREDICTED: similar to SON DNA binding protein [Hydra magnipapillata] Length = 173 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 1/82 (1%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 + A + + + L E + P+Y F G + F + V ++ + Sbjct: 88 RPPAPVANINGKHPVSALAELCVKRKLGIPDYTCVFEHGLAQNKNFLMKVTVANVDYQAS 147 Query: 204 MDC-SKRAAEQVAAAEVLKREG 224 + +K+ A+ AA L+ G Sbjct: 148 VASPNKKHAKANAAIVALRAMG 169 >gi|47228159|emb|CAF97788.1| unnamed protein product [Tetraodon nigroviridis] Length = 189 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + Y VT RSGP H P F V V+++G+ +G + + A+ AA L+ Sbjct: 18 ELRPGLSYHVTSRSGPLHAPLFAVGVDVNGVR-FEGRGPTVKRAKLRAAELALR 70 >gi|219124437|ref|XP_002182510.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405856|gb|EEC45797.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|225382102|gb|ACN89263.1| putative dicer-like protein [Phaeodactylum tricornutum] Length = 963 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 27/129 (20%) Query: 21 SLLEKALT-HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA--KEGELSVRFNS 77 LL +A T H Q YERLEFLGD +LG ++ S EL + ++ Sbjct: 508 RLLLEATTVHP------QPFYERLEFLGDAVLGFCLALNAMTRNASLEYDWEELGLVISN 561 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV------------------V 119 + + + DL + + + K SI+A+V V Sbjct: 562 AGKNKALAAICHRADLEALVTYPNYRWKSAYRPGQSIKANVSLESQKTSDTSRFAPHEIV 621 Query: 120 ESLIAALYL 128 ES+IA++YL Sbjct: 622 ESVIASVYL 630 >gi|195390456|ref|XP_002053884.1| GJ23095 [Drosophila virilis] gi|194151970|gb|EDW67404.1| GJ23095 [Drosophila virilis] Length = 659 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+ L E+ P Y+ F+ + ++ V ++ L G SK+ A+ Sbjct: 383 NGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSATVSVNNLKYGTGYGTSKKQAK 440 Query: 213 QVAAAEVLK 221 AA E L+ Sbjct: 441 SEAARETLE 449 >gi|289619592|emb|CBI53875.1| unnamed protein product [Sordaria macrospora] Length = 441 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK---TELQEWAHAKFGVTPEYKV 177 +++ A+Y G E A FV + R L K + K EL + P ++ Sbjct: 300 AVVGAIYAHCGREAAKAFVKGHIMSRTLDIAKLF-EFKYPTRELAALCAREDFEPPVARL 358 Query: 178 TFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +G P F V + +G S A AA LK Sbjct: 359 VSETGRQSRTPVFVVGIYSGSDKLGEGAGASLDHARFKAAMNALK 403 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 3/96 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 +++ + + L R+ + L L + L +S + Q + L F+G ++ I+ Sbjct: 80 LTSAKLAALHARLNLSPK-IPLQTLARTLVDASADENPQFNNANLAFVGQTLINYHIAEW 138 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94 L + +G L + + Q+AR + Sbjct: 139 LLCKYPRLPQGILFSAMKAYAGPKPLLQIARSWGVD 174 >gi|195445903|ref|XP_002070536.1| GK12111 [Drosophila willistoni] gi|194166621|gb|EDW81522.1| GK12111 [Drosophila willistoni] Length = 649 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+ L E+ P Y+ F+ + ++ V ++ L G SK+ A+ Sbjct: 373 NGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSATVSVNNLKYGTGYGTSKKQAK 430 Query: 213 QVAAAEVLK 221 AA E L+ Sbjct: 431 SEAARETLE 439 >gi|2415555|emb|CAA04303.1| ribonuclease III [Campylobacter jejuni] Length = 73 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE-LSV 73 YAF + + ALTH S SY + ERL +GD +L L++ LF++ + Sbjct: 1 YAFPDTNHFIPALTHKSFKKSY--NNERLVLIGDAVLDLVVGEYLFHNIRQRCRRRFILS 58 Query: 74 RFNSLVSAETCSQVA 88 +V+ ++ + +A Sbjct: 59 LEQVVVNEKSFATIA 73 >gi|294655348|ref|XP_457483.2| DEHA2B12166p [Debaryomyces hansenii CBS767] gi|199429888|emb|CAG85487.2| DEHA2B12166p [Debaryomyces hansenii] Length = 611 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 78/232 (33%), Gaps = 38/232 (16%) Query: 18 ANRSLLEKALTHSSISHS------------YQESYERLEFLGDRILGLLISTLLFNHFDS 65 +N SLL K LT S + +L G R+L + +L Sbjct: 152 SNESLLNKILTDKSFRQPADFLESNDANDFNRSHNAKLGLRGKRLLEFALIEILDEKLPD 211 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 E +L LVS +++A +LA + ++ + +++ + I Sbjct: 212 IHEDDLYYLQFKLVSTSILTKLAFGYNLADNYKFHFSKEMNLDDKLAK-LSNIFLAYIGG 270 Query: 126 LYLDG-GIEVAGTFVDKYWKQRALKSGKFRRD-----AKTELQEWAHAKFGVTPEYKV-- 177 L LDG ++ K ++ ++ D K L E + VT Y + Sbjct: 271 LALDGYSFAEIKLWIAKLYEP-IIQDFNENNDTLKPLNKLALIELSFLFKQVTNMYYIPQ 329 Query: 178 --------TFRSGPDHDPRFTVVVEISGLAPAQGMDCSK--RAAEQVAAAEV 219 T + P + V + I+G G S A+ AA++ Sbjct: 330 QQTTLQFDTLETDP-----YVVKLSINGQTLGIGT-SSIGVEEAKVRAASDA 375 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 6/76 (7%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +AK L + TP Y+ + G D F V + ++ + +D +K+AA Sbjct: 536 PLDNNAKNTLYAVLGSNHL-TPVYRFSKV-GND----FQVSILVNDIVIGTSVDSNKKAA 589 Query: 212 EQVAAAEVLKREGIWT 227 Q AA L + + Sbjct: 590 SQRAAMNALSNKSLLN 605 >gi|195108545|ref|XP_001998853.1| GI23404 [Drosophila mojavensis] gi|193915447|gb|EDW14314.1| GI23404 [Drosophila mojavensis] Length = 655 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+ L E+ P Y+ F+ + ++ V ++ L G SK+ A+ Sbjct: 379 NGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSATVSVNNLKYGTGYGTSKKQAK 436 Query: 213 QVAAAEVLK 221 AA E L+ Sbjct: 437 SEAARETLE 445 >gi|224143640|ref|XP_002336063.1| predicted protein [Populus trichocarpa] gi|222869864|gb|EEF06995.1| predicted protein [Populus trichocarpa] Length = 155 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVA 215 K++LQ + P Y+VT + G DH+P F+ V ++ + S + A+ A Sbjct: 2 YKSKLQAVCQQRGWELPTYQVTKQ-GKDHNPLFSATVTVNATSFSSPSPSSSSKTAQSDA 60 Query: 216 AAEV 219 A Sbjct: 61 AKLA 64 >gi|115313587|gb|AAI24420.1| Dgcr8 protein [Danio rerio] Length = 578 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G+ SK+ A+ Sbjct: 313 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVIIDGVTYGTGIASSKKLAK 370 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 371 NKAARATLE 379 >gi|242005452|ref|XP_002423579.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis] gi|212506727|gb|EEB10841.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis] Length = 409 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 6/71 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 KT+L WA + P+Y T D F +V ++G + +KR AEQ A Sbjct: 332 PKTKLLTWARHRNLEPPKYTTTQE-----DKLFQSIVTVNGKNYGSSYWEKNKRWAEQSA 386 Query: 216 AAEVLKREGIW 226 A L G+ Sbjct: 387 AIVGLVNLGLL 397 >gi|159795592|pdb|2YT4|A Chain A, Crystal Structure Of Human Dgcr8 Core Length = 232 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P F V I G+ G SK+ A+ Sbjct: 20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPSEP--FGASVTIDGVTYGSGTASSKKLAK 77 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 78 NKAARATLE 86 >gi|158290824|ref|XP_312385.4| AGAP002554-PA [Anopheles gambiae str. PEST] gi|157018083|gb|EAA08039.4| AGAP002554-PA [Anopheles gambiae str. PEST] Length = 648 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+ L E+ P Y+ F+ + ++ V I+ L G SK+ A+ Sbjct: 373 NGKSYVCILHEYVQHALRKQPTYE--FKELENAATPYSATVTINELKYGTGYGTSKKQAK 430 Query: 213 QVAAAEVLK 221 AA E L+ Sbjct: 431 SEAARETLE 439 >gi|22164648|ref|NP_671561.1| EVM043 [Ectromelia virus] gi|22123789|gb|AAM92347.1|AF523264_43 EVM043 [Ectromelia virus] gi|14488161|emb|CAC42116.1| dsRNA binding protein [Ectromelia virus] Length = 190 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K D K T + E+ +++ GP + P F V+I G Sbjct: 103 DVIPAKKIIDWKNANPVTIINEYCQITKRDW-SFRIESV-GPSNSPIFYACVDIDGRVFD 160 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 + +KR A+ AA + + Sbjct: 161 KADGKTKRDAKNNAAKLAVDKL 182 >gi|126324741|ref|XP_001376883.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8 [Monodelphis domestica] Length = 907 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 642 NGKSEVCILHEYMQRVLKVRPVYTFFECENPS-EP-FGASVTIDGVTYGAGTASSKKLAK 699 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 700 NKAARATLE 708 >gi|195475660|ref|XP_002090102.1| GE19435 [Drosophila yakuba] gi|194176203|gb|EDW89814.1| GE19435 [Drosophila yakuba] Length = 1283 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L E+ AK V P++ ++GP + RF V + + G +K+ AE+ Sbjct: 1 MDIKSFLYEFC-AKSRVEPKFD-IRQTGPKNRQRFLCEVRVDPNIYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 Score = 36.6 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210 +AK L + A +YK T GPDH F + I A+ +K++ Sbjct: 169 NAKDRLNMYKQANNIRD-DYKYTPV-GPDHARSFMAELSIYVPALKRKVTARETGSNKKS 226 Query: 211 AEQVAAAEVLKRE 223 A + A ++++ Sbjct: 227 ASKSCALSLVRQL 239 >gi|168984491|emb|CAO98759.1| double-stranded RNA activated protein kinase 1 [Gasterosteus aculeatus] Length = 497 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 1/51 (1%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 L E + V Y+ G DH FTV + G G+ +KR Sbjct: 5 RLNELTQKQRLV-VRYEDVGCVGLDHIKTFTVRAVVDGKPYPDGVGKNKRE 54 >gi|114685163|ref|XP_514988.2| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 8 [Pan troglodytes] Length = 416 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P F V I G+ G SK+ A+ Sbjct: 151 NGKSEVCILHEYMQRVLKVRPVYNFFECENPSEP--FGASVTIDGVTYGSGTASSKKLAK 208 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 209 NKAARATLE 217 >gi|194741724|ref|XP_001953337.1| GF17708 [Drosophila ananassae] gi|190626396|gb|EDV41920.1| GF17708 [Drosophila ananassae] Length = 321 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 84/240 (35%), Gaps = 43/240 (17%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55 KR+G +F LL++A T + + +E E L G I + Sbjct: 72 KRLGESFQ-LPLLQRAFTEKAFARVEEEKRRKLGIEENDLHILDNEDLVEKGRHISKAYV 130 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 L + + L N L+S +T + V+ L I + S Sbjct: 131 EAFLQHQMPKVPKEGLVEISNHLLSTDTLAHVSSHLGTKDLIH-----STEYPPSKES-L 184 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQ---EWAHAK 168 A+ ++++I AL G+E A FV + Q+ L + LQ + + Sbjct: 185 AESLQAVIGALADSSGVERAFLFVRDFICTQLNQKDLLDIWTPEEP---LQLLEKICAER 241 Query: 169 FGVTPEYKVTFRSGPDHDPRFTV----VVEISG--LAPAQGMDCSKRAAEQVAAAEVLKR 222 PE ++ G + TV V I G QG + A + AA + L+R Sbjct: 242 KLGDPEPRLLGDCGKN-----TVLAAYQVGIYGNRQLLGQGFGEDVQTATETAAIDALQR 296 >gi|224064274|ref|XP_002192167.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) [Taeniopygia guttata] Length = 490 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K L EW + P Y+ R D F VV ++ + D SK+ AEQ A Sbjct: 367 PKMYLLEWCRKEKHPQPVYETVQR---PLDRLFCSVVTVAEQKYRSTLWDKSKKLAEQAA 423 Query: 216 AAEVLKREGI 225 A L+ G+ Sbjct: 424 AIVCLRTLGV 433 >gi|221114347|ref|XP_002163095.1| PREDICTED: similar to SON DNA-binding protein isoform F (predicted) [Hydra magnipapillata] Length = 629 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 1/82 (1%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 + A + + + L E + P+Y F G + F + V ++ + Sbjct: 544 RPPAPVANINGKHPVSALAELCVKRKLGIPDYTCVFEHGLAQNKNFLMKVTVANVDYQAS 603 Query: 204 MDC-SKRAAEQVAAAEVLKREG 224 + +K+ A+ AA L+ G Sbjct: 604 VASPNKKHAKANAAIVALRAMG 625 >gi|194864148|ref|XP_001970794.1| GG10841 [Drosophila erecta] gi|190662661|gb|EDV59853.1| GG10841 [Drosophila erecta] Length = 1304 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L E+ AK + P++ ++GP + RF V + + G +K+ AE+ Sbjct: 1 MDIKSFLYEFC-AKSRIEPKFD-IRQTGPKNRQRFLCEVRVDPNIYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|170063939|ref|XP_001867321.1| partner of drosha [Culex quinquefasciatus] gi|167881396|gb|EDS44779.1| partner of drosha [Culex quinquefasciatus] Length = 683 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+ L E+ P Y+ F+ + ++ V I+ L G SK+ A+ Sbjct: 396 NGKSYVCILHEYVQHALRKQPSYE--FKELENAATPYSATVSINELKYGTGYGTSKKQAK 453 Query: 213 QVAAAEVLK 221 AA E L+ Sbjct: 454 SEAARETLE 462 Score = 39.3 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 8/66 (12%) Query: 159 TELQEWAHAKFG---VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 T LQ FG V +Y V ++G FT+ V G A + +KR +Q A Sbjct: 530 TILQTCLQRNFGLGDVQIQYDV--KTGKHRKNEFTMTV---GKHTATVVCKNKRDGKQQA 584 Query: 216 AAEVLK 221 A ++L+ Sbjct: 585 AQKILQ 590 >gi|326929530|ref|XP_003210916.1| PREDICTED: microprocessor complex subunit DGCR8-like [Meleagris gallopavo] Length = 709 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 444 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVIIDGVTYGAGTASSKKLAK 501 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 502 NKAARATLE 510 >gi|328778714|ref|XP_397444.4| PREDICTED: microprocessor complex subunit DGCR8-like [Apis mellifera] Length = 638 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+ P YK F+ + ++ VV I+ + G SK+ A+ AA + L Sbjct: 363 LHEYVQHALKKQPTYK--FKELENAATPYSAVVCINDMEYGSGFGSSKKQAKANAARKTL 420 Query: 221 K 221 + Sbjct: 421 E 421 >gi|157129346|ref|XP_001655380.1| double-stranded binding protein, putative [Aedes aegypti] gi|108882115|gb|EAT46340.1| double-stranded binding protein, putative [Aedes aegypti] Length = 564 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+ L E+ P Y+ F+ + ++ V I+ L G SK+ A+ Sbjct: 286 NGKSYVCILHEYVQHALRKQPSYE--FKELENAATPYSATVSINELKYGTGYGTSKKQAK 343 Query: 213 QVAAAEVLK 221 AA E L+ Sbjct: 344 SEAARETLE 352 >gi|71415984|ref|XP_810039.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70874513|gb|EAN88188.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 220 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 27/168 (16%) Query: 7 STLEKRIGYAF-----ANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLL 59 S L +R+ F + L +A H S S + + +G+ +L + L+ Sbjct: 52 SELSRRLQKQFPEIKRQHHVLYLRAFIHPSFTTSDAMNSTMNATTSIGEALLASVGECLI 111 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRV--------SSDLRKDVC-- 108 N F K E+ + + L+S T S V R ++ + LR Sbjct: 112 VNAFRDLKRDEVLLLMSFLLSDATLSSVLRYHWEMEDMVLTDASVQLFQGKTLRSTAGLM 171 Query: 109 ---SFMTSIQ------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147 S Q A V+S+I A+YLD G+E A F+ K+ Q Sbjct: 172 QWLSSNGKQQTPDPYCAGCVKSMIGAVYLDRGLEEAAAFIYKHVLQNI 219 >gi|198452925|ref|XP_001358999.2| GA14761 [Drosophila pseudoobscura pseudoobscura] gi|198132136|gb|EAL28142.2| GA14761 [Drosophila pseudoobscura pseudoobscura] Length = 651 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 5/80 (6%) Query: 145 QRALKSGKFRRDAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 RA K + K+ L E+ P Y+ F+ + ++ +V ++ L Sbjct: 365 PRARKEWIMNPNGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSAIVSVNNLKYG 422 Query: 202 QGMDCSKRAAEQVAAAEVLK 221 G SK+ A+ AA E L+ Sbjct: 423 TGYGTSKKQAKSEAARETLE 442 >gi|170101206|ref|XP_001881820.1| predicted protein [Laccaria bicolor S238N-H82] gi|164643175|gb|EDR07428.1| predicted protein [Laccaria bicolor S238N-H82] Length = 157 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G P+Y +T SG H P +T + G G SKR A+ AA + + Sbjct: 69 GYLPQYALT-VSGTRHQPIWTCAASLDGQMIGLGEGRSKRVAQDEAARQAIINL 121 >gi|10438400|dbj|BAB15238.1| unnamed protein product [Homo sapiens] gi|37779134|gb|AAO86726.1| LP4941 protein [Homo sapiens] Length = 303 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P F V I G+ G SK+ A+ Sbjct: 38 NGKSEVCILHEYMQRVLKVRPVYNFFECENPSEP--FGASVTIDGVTYGSGTASSKKLAK 95 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 96 NKAARATLE 104 >gi|226291271|gb|EEH46699.1| 54S ribosomal protein L3 [Paracoccidioides brasiliensis Pb18] Length = 394 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 83/266 (31%), Gaps = 60/266 (22%) Query: 1 MSALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 +++ + + L R+ L L + L S+ S Q + + L LG +L S Sbjct: 80 LNSPKLAALHARLSL-PRRLPLQTLARTLVDESVDPSPQFNNKSLSILGGDLLTYYTSEH 138 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL------------------------- 93 L + + L S + A+ + + RE L Sbjct: 139 LISTYPRLPIKVLWAAMYSYIGAKPLAAMTREWGLEFIADPGAEVDPGFLQFKRLPPDTE 198 Query: 94 ------ASFIRVSSDLRKD--------VCSFMTSIQ---------------ADVVESLIA 124 +F++ +L K +F S A+ V +++ Sbjct: 199 VKTNANGTFLKPDGNLSKRSTSARIIYGDAFGESALPYPVQYEGVTPNRACANFVRAVMG 258 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL G A F +++ R L R +L + + P K+ +G Sbjct: 259 AVYLHAGRPAAKLFFKEHFMSRYLNMASLFSFRQPTRDLSKLCRREGFEDPVAKILSETG 318 Query: 183 P-DHDPRFTVVVEISGLAPAQGMDCS 207 + P F V + +G S Sbjct: 319 RLSNRPVFNVGIFSGPDKLGEGAGGS 344 >gi|256052736|ref|XP_002569908.1| hypothetical protein [Schistosoma mansoni] gi|227284660|emb|CAY17406.1| expressed protein [Schistosoma mansoni] Length = 732 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+ P Y+ T + +P + + V I+G G SK+ A AA + L Sbjct: 447 LHEYCQNVIRRPPTYQTTVLE-NEKNP-YQMTVFINGNPYGTGAGQSKKCARLEAARKAL 504 Query: 221 K 221 + Sbjct: 505 E 505 >gi|146420287|ref|XP_001486100.1| hypothetical protein PGUG_01771 [Meyerozyma guilliermondii ATCC 6260] Length = 617 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 19/203 (9%) Query: 19 NRSLLEKALTHSSISHSY------------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 N +L ++ TH S Q E+L G +L + + LL F A Sbjct: 152 NTNLRKRVFTHKSYRQISDFLEADSAEEFAQAHNEKLVLHGRSLLNVALLHLLDKKFPKA 211 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 + ++ + L S+ +++A +L+ ++ + + V + + AL Sbjct: 212 QAEDIELMKVRLSSSVVLTKMAMGYNLSQHLKHNISKELSN-EGKVLVLLTVFLAYLGAL 270 Query: 127 YLDG-GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 + +G ++ +++K + + + L ++ KF + P K +SG H Sbjct: 271 FSEGYSMDEICLWIEKLYDPIVAEFDSEHMHSARPL-AYSELKFLLDPHLKF-KQSG--H 326 Query: 186 DPRFTVVVEISGLAPAQGMDCSK 208 DP FT G K Sbjct: 327 DP-FTFKAYYRDTVIGIGSHSDK 348 >gi|58264878|ref|XP_569595.1| hypothetical protein CNC03680 [Cryptococcus neoformans var. neoformans JEC21] gi|57225827|gb|AAW42288.1| hypothetical protein CNC03680 [Cryptococcus neoformans var. neoformans JEC21] Length = 839 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 66/182 (36%), Gaps = 42/182 (23%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MSA ++++ + L +A+T + + + +YERLE LGD +L + + + Sbjct: 489 MSAKEFNSIL--------DPELALQAITAAEGLNVPRWTYERLEILGDTLLKFMTTLHFY 540 Query: 61 NHFDSA-KEGELSVR---FNSLVSAETCSQVARELDLASFIRVSSDLRK----------- 105 A E +++ + L+S T + A + L ++R K Sbjct: 541 LLGGGADSEDDMNKVWQDRHMLISNRTLTANAVKQGLVKYVRNKKFKVKEWTPRDWELDL 600 Query: 106 ---------------DVCSFM---TSIQADVVESLIAALYL-DGGIEVAGTFVDKYWKQR 146 D + AD++E++I A Y+ + ++ + Sbjct: 601 LPGQFAPKKTMPTSFDGPESRVLGDKVIADIIEAIIGASYMPNKDLDSVIAILHHLMVPL 660 Query: 147 AL 148 L Sbjct: 661 NL 662 Score = 51.6 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 5/116 (4%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + +GY F + E A + + + + ER + +G+ +L L + LL + + Sbjct: 699 EVLGYKFKDNKKFEDAFSLA-PAQQTRRIRERYKMMGNALLDLYVIELLMDSYPDEGPAS 757 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIR----VSSDLRKDVCSFMTSIQADVVESL 122 LS+ S + +A EL ++ I S K FM +A E L Sbjct: 758 LSIMKLSRTTEGLRCALAVELGMSDLIIDGDDHSRSELKRATHFMQKAKAQADEDL 813 >gi|134109495|ref|XP_776862.1| hypothetical protein CNBC3530 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259542|gb|EAL22215.1| hypothetical protein CNBC3530 [Cryptococcus neoformans var. neoformans B-3501A] Length = 839 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 66/182 (36%), Gaps = 42/182 (23%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MSA ++++ + L +A+T + + + +YERLE LGD +L + + + Sbjct: 489 MSAKEFNSIL--------DPELALQAITAAEGLNVPRWTYERLEILGDTLLKFMTTLHFY 540 Query: 61 NHFDSA-KEGELSVR---FNSLVSAETCSQVARELDLASFIRVSSDLRK----------- 105 A E +++ + L+S T + A + L ++R K Sbjct: 541 LLGGGADSEDDMNKVWQDRHMLISNRTLTANAVKQGLVKYVRNKKFKVKEWTPRDWELDL 600 Query: 106 ---------------DVCSFM---TSIQADVVESLIAALYL-DGGIEVAGTFVDKYWKQR 146 D + AD++E++I A Y+ + ++ + Sbjct: 601 LPGQFAPKKTMPTSFDGPESRVLGDKVIADIIEAIIGASYMPNKDLDSVIAILHHLMVPL 660 Query: 147 AL 148 L Sbjct: 661 NL 662 Score = 51.6 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 5/116 (4%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + +GY F + E A + + + + ER + +G+ +L L + LL + + Sbjct: 699 EVLGYKFKDNKKFEDAFSLA-PAQQTRRIRERYKMMGNALLDLYVIELLMDSYPDEGPAS 757 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIR----VSSDLRKDVCSFMTSIQADVVESL 122 LS+ S + +A EL ++ I S K FM +A E L Sbjct: 758 LSIMKLSRTTEGLRCALAVELGMSDLIIDGDDHSRSELKRATHFMQKAKAQADEDL 813 >gi|328854071|gb|EGG03206.1| hypothetical protein MELLADRAFT_109487 [Melampsora larici-populina 98AG31] Length = 534 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 7/126 (5%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE ++ Y F + +LL AL S RL++LG+ IL + L + + Sbjct: 379 KELEAKLKYKFNDINLLRNAL-----SRKNLRENRRLKWLGEAILDDWTTYALKDVLVKS 433 Query: 67 KEGELSVRFNSLVSAETCSQVAREL--DLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + T S AR + + +T QAD+V LIA Sbjct: 434 PRRRPLHALAYMHWNATLSTWARRWLQPIKGLVESKIFEVNKDGRALTKTQADLVLVLIA 493 Query: 125 ALYLDG 130 + +D Sbjct: 494 VMCIDC 499 >gi|159163360|pdb|1WHN|A Chain A, Solution Structure Of The Dsrbd From Hypothetical Protein Bab26260 Length = 128 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K L EW + P Y+ R+ D F VV ++ + D SK+ AEQ A Sbjct: 28 PKMCLLEWCRREKLPQPVYETVQRTI---DRMFCSVVTVAEQKYQSTLWDKSKKLAEQTA 84 Query: 216 AAEVLKREGI 225 A L+ +G+ Sbjct: 85 AIVCLRSQGL 94 >gi|58332600|ref|NP_001011374.1| mitochondrial ribosomal protein L44 [Xenopus (Silurana) tropicalis] gi|56789566|gb|AAH88549.1| hypothetical LOC496841 [Xenopus (Silurana) tropicalis] Length = 322 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 74/221 (33%), Gaps = 31/221 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ-----------------ESYERLEFLGDRI 50 +R+ +F+ LL+ A + + + + E L +G Sbjct: 64 AFSQRLNESFS-IQLLKTAFVNKTYVEQEEQRRQELGLDKEMAMLNLQDNEELAGVGSDF 122 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 + L + F + + + L S E + VA+ L + S + + Sbjct: 123 TATYLQKTLEHGFPNLPPDGIKSLVDHLSSQEVINHVAQNLAVEDLALGSECPLDPLTVY 182 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTEL-QEWA 165 T ++I AL G + AG F+ + + + F D + L QE + Sbjct: 183 RT------FFAIIGALLQSSGTQRAGLFIRDFLLAQLIGKDLFDIWLIADPMSLLVQELS 236 Query: 166 HAKFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMD 205 H + PE ++T G P + V + A+G Sbjct: 237 H-RNLPLPEPRLTRECGAATVLPVYFVGLYCDKKLIAEGPG 276 >gi|110625595|ref|NP_079794.1| tRNA-dihydrouridine synthase 2-like [Mus musculus] gi|73620836|sp|Q9D7B1|DUS2L_MOUSE RecName: Full=tRNA-dihydrouridine synthase 2-like gi|12844161|dbj|BAB26260.1| unnamed protein product [Mus musculus] gi|109733553|gb|AAI16937.1| Dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Mus musculus] gi|109733887|gb|AAI16935.1| Dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Mus musculus] gi|148679394|gb|EDL11341.1| mCG20459, isoform CRA_b [Mus musculus] Length = 493 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K L EW + P Y+ R+ D F VV ++ + D SK+ AEQ A Sbjct: 370 PKMCLLEWCRREKLPQPVYETVQRTI---DRMFCSVVTVAEQKYQSTLWDKSKKLAEQTA 426 Query: 216 AAEVLKREGI 225 A L+ +G+ Sbjct: 427 AIVCLRSQGL 436 >gi|50756249|ref|XP_415079.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8 [Gallus gallus] Length = 775 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 510 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVIIDGVTYGAGTASSKKLAK 567 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 568 NKAARATLE 576 >gi|85108136|ref|XP_962512.1| hypothetical protein NCU08299 [Neurospora crassa OR74A] gi|28924120|gb|EAA33276.1| hypothetical protein NCU08299 [Neurospora crassa OR74A] Length = 439 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK---TELQEWAHAKFGVTPEYKV 177 +++ A+Y G E A FV + R L K + K EL + P ++ Sbjct: 298 AVVGAIYAHCGREAAKAFVKAHIMSRTLDIAKLF-EFKYPTRELAALCAREDFEPPVARL 356 Query: 178 TFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +G P F V + +G S A AA LK Sbjct: 357 LSETGRQSRTPVFVVGIYSGSDKLGEGAASSLDHARFKAAMNALK 401 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 3/96 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 +++ + + L R+ + L L + L +S + Q + L F+G ++ I+ Sbjct: 80 LTSAKLAALHARLNLSPK-IPLQTLARTLVDASADENPQFNNANLAFVGQTLINYHIAEW 138 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94 L + +G L + + Q+AR + Sbjct: 139 LLCKYPRLPQGILFSAMKAYAGPKPLLQIARSWGVD 174 >gi|71668496|ref|XP_821128.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70886497|gb|EAN99277.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 220 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 27/168 (16%) Query: 7 STLEKRIGYAF-----ANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLL 59 S L +R+ F + L +A H S S + + +G+ +L + L+ Sbjct: 52 SELSRRLQKQFPEIKRQHHVLYLRAFIHPSFTTSDAMNSTMNATTSIGEALLASVGECLI 111 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSI---- 114 N F K E+ + + L+S T S V R ++ + + ++ + S Sbjct: 112 VNAFRDLKRDEVLLLMSFLLSDATLSSVLRYHWEMEDMVLTDASVQLFQGKTLRSTAGLM 171 Query: 115 ---------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147 A V+S+I A+YLD G+E A F+ K+ Q Sbjct: 172 QWLSSSGKQQTPDPYCAGCVKSMIGAVYLDRGLEEAAAFIYKHVLQNI 219 >gi|47218120|emb|CAG09992.1| unnamed protein product [Tetraodon nigroviridis] Length = 302 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 17/36 (47%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 LQE A + PEY + +GP H FTV + Sbjct: 125 LQELALQRGWPLPEYTLLTEAGPPHMREFTVSCRLE 160 Score = 41.6 bits (97), Expect = 0.087, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 5/53 (9%) Query: 158 KTELQEWAHA---KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 KT +Q H + GV P Y + G H P F V+I G S Sbjct: 29 KTPIQ-ILHEYGIRSGVLPVYVMERAEGEAHQPSFVFTVKIQ-EVTCTGQGPS 79 >gi|72392539|ref|XP_847070.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62175606|gb|AAX69739.1| hypothetical protein Tb927.8.2370 [Trypanosoma brucei] gi|70803100|gb|AAZ13004.1| hypothetical protein Tb927.8.2370 [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 1648 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 18/129 (13%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 +++LL+ A T +++YE LEF+GD I+ ++ + E L Sbjct: 715 DKTLLKWATTRE--CEDKEQNYEILEFIGDAIMDFIV----VSDSFLLGEPWHKDVNTKL 768 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDG-GIEVA 135 E + + I ++AD+VES++ A+Y G G++ Sbjct: 769 CCNEVLATL---------IPPGLSEELSRVYDEVHYKVKADMVESILGAVYQSGMGLDEV 819 Query: 136 GTFVDKYWK 144 + ++++ Sbjct: 820 RKQLRRFFR 828 >gi|169624489|ref|XP_001805650.1| hypothetical protein SNOG_15504 [Phaeosphaeria nodorum SN15] gi|160705181|gb|EAT77169.2| hypothetical protein SNOG_15504 [Phaeosphaeria nodorum SN15] Length = 198 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 20/137 (14%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK----------------- 67 A+TH S H + +RL +LG RI+ L S L + A+ Sbjct: 48 LAVTHKSFEHGKRGFNDRLAYLGRRIVELQTSQALISSPQEAQAETDEFGRIPFQHPALI 107 Query: 68 --EGELSVRFNSLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTSIQADVVESLIA 124 +G + ++ +Q+A L R + S + S+ + +++ Sbjct: 108 GLQGLSDEAQSKILDKARLAQIAERYGLDKVTRWTPKRADNLQGSGIESVLMTSLYAIVG 167 Query: 125 ALYLDGGIEVAGTFVDK 141 A+ L+ G E A V + Sbjct: 168 AIALERGGEAANKVVQE 184 >gi|261330250|emb|CBH13234.1| T. brucei spp.-specific protein [Trypanosoma brucei gambiense DAL972] Length = 1648 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 18/129 (13%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 +++LL+ A T +++YE LEF+GD I+ ++ + E L Sbjct: 715 DKTLLKWATTRE--CEDKEQNYEILEFIGDAIMDFIV----VSDSFLLGEPWHKDVNTKL 768 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDG-GIEVA 135 E + + I ++AD+VES++ A+Y G G++ Sbjct: 769 CCNEVLATL---------IPPGLSEELSRVYDEVHYKVKADMVESILGAVYQSGMGLDEV 819 Query: 136 GTFVDKYWK 144 + ++++ Sbjct: 820 RKQLRRFFR 828 >gi|226502082|ref|NP_001146877.1| RNA binding protein [Zea mays] gi|195604576|gb|ACG24118.1| RNA binding protein [Zea mays] Length = 179 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 9/145 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + L+ R+GYAF +LL +A+THSS SH + L + Sbjct: 37 LAALQSRVGYAFRAPALLRRAMTHSSYSHENGRALAVLGL---AAAESAAALRALAADAD 93 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A +S + S C++ + + +RVS + ++ + +L+ A Sbjct: 94 AAPSAVSRAASEAASGPACARAGARIGIPDVVRVS----GQTSAAAPTVVCSALRALVGA 149 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS 150 + +D A V +W+ AL S Sbjct: 150 VAVDANSTDAAGEV--FWRLHALTS 172 >gi|189241606|ref|XP_972567.2| PREDICTED: similar to adenosine deaminase [Tribolium castaneum] gi|270000868|gb|EEZ97315.1| hypothetical protein TcasGA2_TC011126 [Tribolium castaneum] Length = 850 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + D KT E + +Y + GP H P F + V+++ G SK Sbjct: 87 EPEIDNIDLKTS--EISIDDLKSVLKYTLVEEIGPSHAPTFKMAVKVNEKIY-YGKGGSK 143 Query: 209 RAA 211 + A Sbjct: 144 QKA 146 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 7/79 (8%) Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 ++ ++ + D K + +Y++ ++GPDH P F + ++ Sbjct: 247 QKLINDNLINVQIEPMTVKTDPK-----YV-ENTYSLLKYRLVEQTGPDHKPTFKMAAKV 300 Query: 196 SGLAPAQGMDCSKRAAEQV 214 + G+ SK A+ Sbjct: 301 NEKIY-YGVGGSKVKAQMN 318 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 6/55 (10%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 K +L E+ ++ + + GP H P F + +++G G SK+ A+ Sbjct: 186 KNKL-EYL----KPLLKFTLIEQIGPSHAPTFKMAAKVNGKLYF-GNGGSKQKAQ 234 >gi|157131542|ref|XP_001655871.1| tRNA-dihydrouridine synthase [Aedes aegypti] gi|108871488|gb|EAT35713.1| tRNA-dihydrouridine synthase [Aedes aegypti] Length = 461 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 6/70 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 K++L + P+Y+V D F +V++ + + SK+ AEQ A Sbjct: 383 PKSKLYIYTVRNNLKLPKYEVI-----HKDKLFRAIVQVGDEKYSSSFWEKSKKYAEQSA 437 Query: 216 AAEVLKREGI 225 A L GI Sbjct: 438 ALTSLLHLGI 447 >gi|148679393|gb|EDL11340.1| mCG20459, isoform CRA_a [Mus musculus] Length = 380 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K L EW + P Y+ R+ D F VV ++ + D SK+ AEQ A Sbjct: 257 PKMCLLEWCRREKLPQPVYETVQRTI---DRMFCSVVTVAEQKYQSTLWDKSKKLAEQTA 313 Query: 216 AAEVLKREGI 225 A L+ +G+ Sbjct: 314 AIVCLRSQGL 323 >gi|6467479|gb|AAF13156.1| double stranded RNA activated protein kinase [Homo sapiens] Length = 551 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 22/44 (50%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 K GV +Y+ SGP HD RFT V I G +G SK+ Sbjct: 19 QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKE 62 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 L K +T Y+ + GP+ F ++ + G +K+ A+Q+AA Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160 Query: 219 V 219 Sbjct: 161 A 161 >gi|115758842|ref|XP_001203807.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8, partial [Strongylocentrotus purpuratus] gi|115943248|ref|XP_001198796.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8, partial [Strongylocentrotus purpuratus] Length = 417 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Query: 158 KTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT L E+A P+Y V S P F +VEI G+ +G SKR A+ Sbjct: 172 KTPVCILHEYAQRVMRTQPQY-VFGESRNASAP-FEALVEIKGMKYGRGEATSKRLAKAE 229 Query: 215 AAAEVL 220 AA + L Sbjct: 230 AAKKTL 235 >gi|332002938|gb|AED90321.1| RNA polymerase II C-terminal domain phosphatase-like 2 [Arabidopsis thaliana] Length = 774 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE + G E++ + + F+V V +G GM +K+ A Q AA Sbjct: 659 SALQEIG-RRCGSKVEFRTVIST----NKELQFSVEVLFTGEKIGIGMAKTKKDAHQQAA 713 Query: 217 AEVLK 221 L+ Sbjct: 714 ENALR 718 >gi|79503115|ref|NP_195747.2| CPL2; double-stranded RNA binding / phosphatase [Arabidopsis thaliana] gi|49175307|gb|AAT52023.1| C-terminal domain phosphatase-like 2 [Arabidopsis thaliana] gi|332002937|gb|AED90320.1| RNA polymerase II C-terminal domain phosphatase-like 2 [Arabidopsis thaliana] Length = 770 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE + G E++ + + F+V V +G GM +K+ A Q AA Sbjct: 659 SALQEIG-RRCGSKVEFRTVIST----NKELQFSVEVLFTGEKIGIGMAKTKKDAHQQAA 713 Query: 217 AEVLK 221 L+ Sbjct: 714 ENALR 718 >gi|238055325|sp|Q5YDB5|CPL2_ARATH RecName: Full=RNA polymerase II C-terminal domain phosphatase-like 2; Short=FCP-like 2; AltName: Full=Carboxyl-terminal phosphatase-like 2; Short=AtCPL2; Short=CTD phosphatase-like 2 gi|6759450|emb|CAB69855.1| hypothetical protein [Arabidopsis thaliana] Length = 771 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE + G E++ + + F+V V +G GM +K+ A Q AA Sbjct: 660 SALQEIG-RRCGSKVEFRTVIST----NKELQFSVEVLFTGEKIGIGMAKTKKDAHQQAA 714 Query: 217 AEVLK 221 L+ Sbjct: 715 ENALR 719 >gi|115704787|ref|XP_795846.2| PREDICTED: similar to DiGeorge syndrome critical region gene 8 [Strongylocentrotus purpuratus] gi|115951896|ref|XP_001182584.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8 [Strongylocentrotus purpuratus] Length = 416 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Query: 158 KTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT L E+A P+Y V S P F +VEI G+ +G SKR A+ Sbjct: 171 KTPVCILHEYAQRVMRTQPQY-VFGESRNASAP-FEALVEIKGMKYGRGEATSKRLAKAE 228 Query: 215 AAAEVL 220 AA + L Sbjct: 229 AAKKTL 234 >gi|91084275|ref|XP_971282.1| PREDICTED: similar to double-stranded binding protein, putative [Tribolium castaneum] gi|270008749|gb|EFA05197.1| hypothetical protein TcasGA2_TC015332 [Tribolium castaneum] Length = 563 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+ L E+ P YK T + + V I+ + G SK+ A+ Sbjct: 287 NGKSYVCILHEYVQHALKKQPTYKFTELE--NAATPYAATVSINDMQYGVGYGTSKKQAK 344 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 345 SEAARATLE 353 >gi|307202941|gb|EFN82161.1| Protein DGCR8 [Harpegnathos saltator] Length = 659 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+ P YK F+ + ++ VV I+ + G SK+ A+ AA + L Sbjct: 384 LHEYVQHALKKQPTYK--FKELENAATPYSAVVCINDMEYGSGFGSSKKQAKANAARKTL 441 Query: 221 K 221 + Sbjct: 442 E 442 >gi|170094987|ref|XP_001878714.1| predicted protein [Laccaria bicolor S238N-H82] gi|164646018|gb|EDR10264.1| predicted protein [Laccaria bicolor S238N-H82] Length = 281 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 14/123 (11%) Query: 26 ALTHSSISHSYQESYER---LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 AL H +R LE LGD ++ L I+ LL N S LVS + Sbjct: 24 ALHHLDW-DLISADMQRRNCLETLGDAVMSLSITNLLQNLLPDRSLQVYSAIRPPLVSNQ 82 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 T I ++ + + E + A G + A ++ + Sbjct: 83 TF----------QHILANAGISHGHPQTKCKEAGNAFEIYVGAFSETEGFDAANGWIAEL 132 Query: 143 WKQ 145 + Sbjct: 133 FAP 135 >gi|326495340|dbj|BAJ85766.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326503490|dbj|BAJ86251.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326520661|dbj|BAJ92694.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 527 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 6/128 (4%) Query: 22 LLEKALTH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 LL H + + + + RL FLG +L L + G + R Sbjct: 158 LLYLVFQHLDPSSERTRTRHVRNGHSRLWFLGQFVLELAFCEFFLQRYPRESPGPMRERV 217 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 +L+ + + + L + + DL K + V +L A+YL G+ Sbjct: 218 FALIGKKMLPKWIKAASLHNLVFPYDDLDKMLRKDREPPTKAVFWALFGAIYLCFGMPEV 277 Query: 136 GTFVDKYW 143 + + + Sbjct: 278 YRVLFEAF 285 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 10/145 (6%) Query: 18 ANRSL---LEKALTHSS-ISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + +ERLE++G +I L+++ L A LS Sbjct: 384 RNIELGLGLQLCFMHPSKYKFEHPRFCFERLEYVGQKIQDLVLAERLLMKHLDAPGRWLS 443 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFMTSIQADVVESLIAALYL 128 + L+ + C + R L +I + S V +++ Y Sbjct: 444 EKHRRLLMNKYCGRYLRGKHLHHYIIYGETVQDRFEHNRRLRNPST-TAVQQAIHGLSYC 502 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF 153 G + + + ++ Sbjct: 503 VYGKPDVRRLMFEVFDFEQVQPKAV 527 >gi|291240590|ref|XP_002740205.1| PREDICTED: RIKEN cDNA 1810030O07-like [Saccoglossus kowalevskii] Length = 838 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 8/70 (11%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV---EISGLAPAQGMD---CSKR 209 + K LQE TP+Y+ T D+ +FT V+ + +K+ Sbjct: 535 NYKNILQEHCQKNRFDTPKYESTKIQ--DNPAQFTTVLTYKTLGNTVKYSSEGLTHSNKK 592 Query: 210 AAEQVAAAEV 219 +EQ AA Sbjct: 593 ESEQSAAKVA 602 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 20/88 (22%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 + +L ++ + K LQE +P+Y+ T P+F + + Sbjct: 396 EPVSLSVEEYFVNYKNVLQEHCQKTGLHSPDYETTKIKEDP--PQFIAWLTY------KA 447 Query: 204 MDCSK------------RAAEQVAAAEV 219 + SK + AEQ AA Sbjct: 448 IGKSKKYLSESLIHTSAKKAEQSAAKVA 475 Score = 36.6 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 8/75 (10%) Query: 156 DAKTELQEWAHAKFGVT-PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC--SKRAAE 212 + K +LQE+ P Y+ T D +F ++ Q SKR AE Sbjct: 683 NYKGKLQEFLTKAGVTNRPVYETTQV-----DMKFISTFKLDTKYAIQTTTPFESKRKAE 737 Query: 213 QVAAAEVLKREGIWT 227 + A ++L+ I T Sbjct: 738 EHLAKQILQSLKIET 752 >gi|94985992|ref|YP_605356.1| double-stranded RNA binding [Deinococcus geothermalis DSM 11300] gi|94556273|gb|ABF46187.1| double-stranded RNA binding protein [Deinococcus geothermalis DSM 11300] Length = 176 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + K +L A P + T GP H+ F V+V SG QG SKR Sbjct: 46 MNPKGDLIARLMALGLGAPTFDATAE-GPPHERVFHVMVSASGRVLGQGEGRSKRD 100 >gi|170037802|ref|XP_001846744.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167881148|gb|EDS44531.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 351 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%) Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 +++ ++ + L+E++ + P Y+ GP HD F V + G+ Sbjct: 264 KSINLVTEGKNPISILEEYSTKRKLQPPRYETVVDEGPVHDKTFVFKVIVDGVDY 318 >gi|149457864|ref|XP_001511059.1| PREDICTED: similar to Mitochondrial ribosomal protein L44, partial [Ornithorhynchus anatinus] Length = 275 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 79/241 (32%), Gaps = 29/241 (12%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-----------------ESYERLEFLG 47 +R+ F+ LL+ A + S + + + L G Sbjct: 11 EIQAFSRRLHENFS-LELLKTAFVNRCYIQSEEARRQELGVEEQAAALKLKDNQELSEQG 69 Query: 48 DRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 ++ L + F + ++ L E VAR L + + +S+D Sbjct: 70 AAFSHTYLTQLFEDTFPNMPPEGVAALVGFLTGPEVVCHVARNLAVEE-LTLSADFPVP- 127 Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQE 163 ++ +++ AL G + F+ + + F + L++ Sbjct: 128 ----QTVLRQTFFAVLGALLKSDGPQRTAVFIRDFLIPQMTGKELFEMWKVVNPMGLLED 183 Query: 164 WAHAKFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 184 EMTKRNVPIPEPRLTRQSGSSTVLPVYFVGLYCDQKLIAEGPGETVLVAEEEAARVALRK 243 Query: 223 E 223 Sbjct: 244 L 244 >gi|19881492|ref|NP_612309.1| putative ribonuclease [Infectious spleen and kidney necrosis virus] gi|19773697|gb|AAL98811.1|AF371960_87 putative ribonuclease [infectious spleen and kidney necrosis virus] Length = 256 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 77/233 (33%), Gaps = 43/233 (18%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG-------E 70 N + TH S +H +YE E LGD I+ ++ F Sbjct: 28 KNTQVFHSVFTH-SKAHPVN-NYEWYEKLGDAIIASVMPQYYMERFPKLAHDPSATVART 85 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQADVVESLIAALYLD 129 +S + S T S +A+ + ++ + + D E+++ A+ + Sbjct: 86 VSQLAITYQSGTTMSNIAQRMGFLKWVVAHRDGVAPASYKEQQRLLEDTFEAMVGAISIT 145 Query: 130 ---------GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT----PEY- 175 G F+ + ++ D K+ L+E V EY Sbjct: 146 MDNATGVKCSGHIACYRFLKYAYGLINMRLDGLI-DNKSMLKELIDMHSSVLDSFTFEYT 204 Query: 176 ----KVTFRSGPDHDPRFTV-VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +T G ++TV ++ L SKR E+V A +VL + Sbjct: 205 NNVMTLTVAHG-----KYTVSEANVNNL--------SKRELEKVLAGKVLAQL 244 >gi|156364733|ref|XP_001626500.1| predicted protein [Nematostella vectensis] gi|156213378|gb|EDO34400.1| predicted protein [Nematostella vectensis] Length = 237 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 2/92 (2%) Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 + + + + + L ++ + L E A+ G+ ++ S D FT Sbjct: 33 NTSTSVMKQRVLKAVLVQVLMTKNPISALMEAC-AQAGLKVTFQEYDESLRGFDKIFTCD 91 Query: 193 VEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + G L+ + +K+ A+ AA + ++ Sbjct: 92 VTVDGVLSSCRAYGPTKKEAKGNAARKAIEEL 123 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + LQE+ A TP+Y G DH F V Sbjct: 164 NYIGTLQEYTAAHRWPTPKYS-EDMRGQDHCKEFIVKC 200 >gi|208690903|gb|ACI31227.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Miopithecus talapoin talapoin] Length = 550 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 6/59 (10%) Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 A K T Y+ GP+ F +I + G +K+ A+Q+AA L Sbjct: 108 IAQKKRL-TVNYEQCTLGVHGPEG---FHYKCKIGDKEYSIGTGSTKQEAKQLAAKLAL 162 Score = 37.0 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 EL ++ + G+T Y+ +GP HD RFT V + S Sbjct: 13 ELNKYRQKQ-GITFSYQELPNTGPPHDRRFTFRVVTDRREFPEAEGRS 59 >gi|326506566|dbj|BAJ91324.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 493 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 6/128 (4%) Query: 22 LLEKALTH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 LL H + + + + RL FLG +L L + G + R Sbjct: 158 LLYLVFQHLDPSSERTRTRHVRNGHSRLWFLGQFVLELAFCEFFLQRYPRESPGPMRERV 217 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 +L+ + + + L + + DL K + V +L A+YL G+ Sbjct: 218 FALIGKKMLPKWIKAASLHNLVFPYDDLDKMLRKDREPPTKAVFWALFGAIYLCFGMPEV 277 Query: 136 GTFVDKYW 143 + + + Sbjct: 278 YRVLFEAF 285 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 5/89 (5%) Query: 18 ANRSL---LEKALTHSS-ISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + +ERLE++G +I L+++ L A LS Sbjct: 384 RNIELGLGLQLCFMHPSKYKFEHPRFCFERLEYVGQKIQDLVLAERLLMKHLDAPGRWLS 443 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSS 101 + L+ + C + R L +I Sbjct: 444 EKHRRLLMNKYCGRYLRGKHLHHYIIYGE 472 >gi|302423216|ref|XP_003009438.1| 54S ribosomal protein L3 [Verticillium albo-atrum VaMs.102] gi|261352584|gb|EEY15012.1| 54S ribosomal protein L3 [Verticillium albo-atrum VaMs.102] Length = 413 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 7/116 (6%) Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK---TELQEWAHA 167 + A V +L+ ALY+ GG E +FVD + R + K EL Sbjct: 264 RQNANAAFVRALVGALYVHGGRESVRSFVDAHILARRVDLESLF-SFKLPTRELAMLCAR 322 Query: 168 KFGVTPEYKVTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + P ++ +G H P F V + +G S A A+ LK Sbjct: 323 EGFEAPVARLLSETGR-HSRTPVFVVGIYSGQDKLGEGTGASLDFARLKASMNALK 377 >gi|328787042|ref|XP_393745.3| PREDICTED: tRNA-dihydrouridine synthase 2-like [Apis mellifera] Length = 460 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 58/165 (35%), Gaps = 13/165 (7%) Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS----IQADVVES 121 +E + S +S++T Q+ DL+ + + ++ S ++ D ++ Sbjct: 290 LREQQESTLGKKFLSSQTLEQICNLWDLSDYFYLKKKEFEEKGLLGRSQVSPMKEDEKQT 349 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + E + + + + KT L +W + P Y T + Sbjct: 350 QLCNKRKILEEEDVILMHCAFLRNNYITDLEL---PKTVLHKWTQTQRKKMPNYN-TQQK 405 Query: 182 GPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGI 225 G F +V + G + +K+ AEQ AA L G+ Sbjct: 406 G----KLFRSIVTVDGRKYGSSFWEKNKKWAEQGAALVCLFSLGL 446 >gi|224161117|ref|XP_002338294.1| predicted protein [Populus trichocarpa] gi|222871751|gb|EEF08882.1| predicted protein [Populus trichocarpa] Length = 196 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVA 215 K+ LQ + P Y+VT + G DH P F+ V ++ + S + A+ A Sbjct: 2 YKSNLQAVCQQRGWELPTYQVTKQ-GQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSEA 60 Query: 216 AAEV 219 A Sbjct: 61 AKLA 64 >gi|198423460|ref|XP_002126266.1| PREDICTED: similar to SON DNA-binding protein [Ciona intestinalis] Length = 140 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + P +++ SGPDH F V I+G +K+ A+ Sbjct: 64 KHPVSALMEICSKRKWSQPNFQLVHNSGPDHQRFFMFKVTINGQEYQPSTPSVNKKLAKA 123 Query: 214 VAAAEVLKREGI 225 +A+ L+ G+ Sbjct: 124 NSASVALQGMGL 135 >gi|327283189|ref|XP_003226324.1| PREDICTED: microprocessor complex subunit DGCR8-like isoform 1 [Anolis carolinensis] Length = 773 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+E L E+ V P Y P +P F V I G+ G SK+ A+ Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVIIDGVTYGAGTASSKKLAK 565 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 566 NKAARATLE 574 >gi|260834651|ref|XP_002612323.1| hypothetical protein BRAFLDRAFT_265495 [Branchiostoma floridae] gi|229297700|gb|EEN68332.1| hypothetical protein BRAFLDRAFT_265495 [Branchiostoma floridae] Length = 444 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 KT L W+ ++ P Y+ + D +F VV + A +K+ AEQ A Sbjct: 373 PKTILLNWSRTEYLPQPTYETVKQ---GSDTKFNSVVTVGDKRYASSFWHKAKKLAEQAA 429 Query: 216 AAEVLKREGI 225 A+ L+ G+ Sbjct: 430 ASVCLRTLGL 439 >gi|296044644|gb|ADG85736.1| type 2 double stranded RNA activated protein kinase [Gadus morhua] Length = 624 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 19/34 (55%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 RFT V ++G +G+ +K+ A Q AA L+ Sbjct: 5 RFTQRVILNGKPYPEGVGKNKKEARQNAAKHALE 38 Score = 36.6 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 7/28 (25%), Positives = 14/28 (50%) Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + G G +K+ A++ AA V ++ Sbjct: 108 LDGTEYPSGSGRTKKEAKEDAARLVYEK 135 >gi|195373462|ref|XP_002046012.1| GM19663 [Drosophila sechellia] gi|194122928|gb|EDW44971.1| GM19663 [Drosophila sechellia] Length = 267 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 E+ P Y+ F+ + ++ V ++ L G SK+ A+ AA E L+ Sbjct: 1 EYVQHALKTQPTYE--FKELQNAATPYSATVSVNNLKYGTGYGTSKKQAKSEAARETLE 57 >gi|240978634|ref|XP_002403002.1| 39S ribosomal protein L44, putative [Ixodes scapularis] gi|215491266|gb|EEC00907.1| 39S ribosomal protein L44, putative [Ixodes scapularis] Length = 337 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 77/242 (31%), Gaps = 38/242 (15%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEF---LGD---------------- 48 KR+G +++ +L A S E R E LGD Sbjct: 73 AFAKRLGETWSDETL-RTAFVQQSFVEREAEH--RRELGMPLGDDGTLSLTPNTDLARAG 129 Query: 49 -RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS--SDLRK 105 ++ L F ++ L+S + S V++ + + I + + Sbjct: 130 RQLCDSYADEYLVREFPQLPREGVNAVKEHLMSDQVLSHVSKNIGTSDLILCADFPPEQT 189 Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---D-AKTEL 161 A+V+ +L+ L D G + A FV + + + D L Sbjct: 190 T--------LANVLMALVGGLARDCGKDRACLFVRDFVLAQLVGKDVNELWVVDKPIERL 241 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + E ++ + SG + + V + + A+++AA + L Sbjct: 242 ASLLQGQGMSPAEPRLLWDSGRTTLEASYCVGFYSDKKLLGSSVGETVEIAQEMAARDAL 301 Query: 221 KR 222 +R Sbjct: 302 RR 303 >gi|322782637|gb|EFZ10516.1| hypothetical protein SINV_13804 [Solenopsis invicta] Length = 401 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 52/159 (32%), Gaps = 23/159 (14%) Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + A+T Q+ L + R S ++ + I LD I+ + Sbjct: 243 KFLDAQTLEQICEVWGLDDYCRAKSKEFQNKG------LLGRFQ--ITPEILDKDIDNSI 294 Query: 137 TFVDKYWKQRA-LKSGKFRRD--------AKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 + K ++ L F R+ KT L +W P Y + Sbjct: 295 SHKRKIQEEDVSLMRCAFLRNSYVTDSDLPKTRLLKWTKENRKKMPIYNTRQE-----NK 349 Query: 188 RFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGI 225 F VV + G + +K+ AEQ AA L GI Sbjct: 350 LFCSVVTVDGRKYGSSFWEKNKKWAEQGAALVCLYFLGI 388 >gi|37231562|gb|AAH58431.1| Dus2l protein [Mus musculus] Length = 289 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K L EW + P Y+ R+ D F VV ++ + D SK+ AEQ A Sbjct: 166 PKMCLLEWCRREKLPQPVYETVQRTI---DRMFCSVVTVAEQKYQSTLWDKSKKLAEQTA 222 Query: 216 AAEVLKREGI 225 A L+ +G+ Sbjct: 223 AIVCLRSQGL 232 >gi|189210018|ref|XP_001941341.1| RNase III domain containing protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187977434|gb|EDU44060.1| RNase III domain containing protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 269 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 50/145 (34%), Gaps = 28/145 (19%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---------------------HF 63 A+TH S H Q +RL +LG RI+ L S L + Sbjct: 111 LAVTHKSFQHGKQGFNDRLAYLGRRIVELQTSQALMSAPQEYQWPRDEMGKPKPDEFGRK 170 Query: 64 DSAKE-----GELSVRFNSLV-SAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQA 116 LS SLV S + +A L R D S + ++ Sbjct: 171 PYLHPALNGLQGLSDEAESLVLSKSRLAPIAERYGLDKVTRWKPKRADDLKGSGIETVLM 230 Query: 117 DVVESLIAALYLDGGIEVAGTFVDK 141 + +++ A+ L+ G EVA V + Sbjct: 231 TTLYAIVGAVALERGGEVANKLVQE 255 >gi|195356071|ref|XP_002044505.1| GM13239 [Drosophila sechellia] gi|194131807|gb|EDW53741.1| GM13239 [Drosophila sechellia] Length = 101 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E P Y+ G H+ FT+ + G +K+ A+++AA + R Sbjct: 39 EMCVQLRWPPPLYETEAEVGLPHERVFTIACSVLEHRV-MGKGTTKKIAKRLAAHSMFVR 97 Query: 223 E 223 Sbjct: 98 L 98 >gi|212545454|ref|XP_002152881.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224] gi|210065850|gb|EEA19944.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224] Length = 155 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 53/150 (35%), Gaps = 17/150 (11%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLL 54 M A + + ++ I Y+ + L+ +AL S +Q RL GD Sbjct: 1 MEA-KVAACQRIIQYSVTDMRLILEALNMSGQGLFFQGQWMKLPKNTRLAVYGDS----A 55 Query: 55 ISTLLFNHFDSAK--EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 + + + + + + ++ + + L + ++ Sbjct: 56 AAHYMCRRWVEMPLTKEQWTGIRKHVLGNSILGRTGIRMGLNYCLNLNPG----TTEVSH 111 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKY 142 + A VE+++ A++LDGG + + + Sbjct: 112 DMMATSVEAILGAVHLDGGDQALASVMTAL 141 >gi|157107592|ref|XP_001649849.1| hypothetical protein AaeL_AAEL004808 [Aedes aegypti] gi|108879546|gb|EAT43771.1| conserved hypothetical protein [Aedes aegypti] Length = 919 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 +K + + L E+ + + P Y + SGP H F V ++GL Sbjct: 838 VKINTDGKHPVSILGEYCSKRKWMPPRYDLVHESGPGHAKNFVFKVIVNGLEY 890 >gi|328713081|ref|XP_003244986.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A-like isoform 4 [Acyrthosiphon pisum] Length = 443 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 EY + +G H+P F V ++ A G SK+ A++ AA +L + Sbjct: 144 KKQVVEYGLISITGHVHNPVFRF-VAVNDGIYAYGDGLSKKEAKKNAAIALLDKL 197 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV-TFRSGPDHDPRFTVVVEISGLAPA 201 + + + + + LQE A+ P+Y H+ ++VV + L + Sbjct: 223 YSKENVLDEISKVNPIGVLQELCMARRWELPDYDFPQDERNEAHNVWYSVVCSLRDLK-S 281 Query: 202 QGMDCSKRAAEQVAAAEV 219 G +K+AA++ AA + Sbjct: 282 VGEGKTKQAAKRQAAHIM 299 >gi|328713075|ref|XP_001942593.2| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A-like isoform 1 [Acyrthosiphon pisum] gi|328713077|ref|XP_003244984.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A-like isoform 2 [Acyrthosiphon pisum] gi|328713079|ref|XP_003244985.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A-like isoform 3 [Acyrthosiphon pisum] Length = 427 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 EY + +G H+P F V ++ A G SK+ A++ AA +L + Sbjct: 128 KKQVVEYGLISITGHVHNPVFRF-VAVNDGIYAYGDGLSKKEAKKNAAIALLDKL 181 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV-TFRSGPDHDPRFTVVVEISGLAPA 201 + + + + + LQE A+ P+Y H+ ++VV + L + Sbjct: 207 YSKENVLDEISKVNPIGVLQELCMARRWELPDYDFPQDERNEAHNVWYSVVCSLRDLK-S 265 Query: 202 QGMDCSKRAAEQVAAAEV 219 G +K+AA++ AA + Sbjct: 266 VGEGKTKQAAKRQAAHIM 283 >gi|332022994|gb|EGI63259.1| tRNA-dihydrouridine synthase 2-like protein [Acromyrmex echinatior] Length = 461 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 6/70 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 KT L +W P Y S F VV + G + +K+ AEQ A Sbjct: 384 PKTRLLKWTKENRKKMPVYNTRQES-----KLFCSVVTVDGRKYGSSFWEKNKKWAEQGA 438 Query: 216 AAEVLKREGI 225 A L GI Sbjct: 439 ALVCLYFLGI 448 >gi|260817370|ref|XP_002603560.1| hypothetical protein BRAFLDRAFT_79093 [Branchiostoma floridae] gi|229288879|gb|EEN59571.1| hypothetical protein BRAFLDRAFT_79093 [Branchiostoma floridae] Length = 1211 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 6/80 (7%) Query: 149 KSGKFRRD---AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + +D K LQ+ + +P YK G ++ TV + G + Sbjct: 799 REATVSKDSVPYKDILQKHVQDQKLPSPRYK--DVKGEENTLS-TVSFKTRGAYQTKEPA 855 Query: 206 CSKRAAEQVAAAEVLKREGI 225 SK+ AEQ AA VL+ + Sbjct: 856 KSKKEAEQNAAKAVLEMLKV 875 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 12/72 (16%) Query: 155 RDAKTELQEWAHAKF--GVTPEYK--VTFRSGPDHDPRFTVVVEIS--GLAPAQGMDCSK 208 R+ K LQ+ + P+Y +T F V G + SK Sbjct: 1060 RNYKAILQQHVQKQRLQLPPPKYNDSITEE------KTFLSTVRFETAGAFLTTEVAPSK 1113 Query: 209 RAAEQVAAAEVL 220 + +EQ AA V+ Sbjct: 1114 KDSEQNAAKSVI 1125 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 15/80 (18%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL------APAQGMD 205 + D KT L+ + P YK + P+ D F V PA+G Sbjct: 556 EDNTDYKTVLKGHVKKQKLPAPFYK----TQPEGD-VFKSTVTFQTRGAYQTTEPAKG-- 608 Query: 206 CSKRAAEQVAAAEVLKREGI 225 K+ AEQ AA EV++ GI Sbjct: 609 --KKEAEQNAAKEVVRMLGI 626 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 8/76 (10%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QG 203 ++ + + ELQE+ K G P+ +V F+ V ++G A QG Sbjct: 440 KKVAIQKAYPTHFRAELQEYL-KKQGQDPDIEVIQDE-----QGFSAQVRMTGRAEFPQG 493 Query: 204 -MDCSKRAAEQVAAAE 218 +K+ AEQ AA + Sbjct: 494 DTSSTKKEAEQSAAEK 509 Score = 40.8 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 12/79 (15%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEIS-GLAPAQGMDC--SKRAAEQ 213 K LQE+ + P+Y G P FT V + A + SK+ A Q Sbjct: 386 KNNLQEYLDKEKLPKPKYVRIEGEGANAGQPPFTYRVVLQYKNALCRPEGGFASKKVAIQ 445 Query: 214 VA------A--AEVLKREG 224 A A E LK++G Sbjct: 446 KAYPTHFRAELQEYLKKQG 464 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 19/105 (18%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA-KFGVTPEYKVTFRSGPDHDP 187 D A + +D + R+ R+ K LQ++A P+Y+ G Sbjct: 1115 DSEQNAAKSVID-LLEHRSDN----ERNYKGVLQQYAIKLDSADVPKYQTYSSEGG---- 1165 Query: 188 RFTVVVEISG-------LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 F VV ++ SK+ A+Q AA ++ I Sbjct: 1166 -FKTVVSCRAITKTASFEVTSEAC-NSKKEAQQRAARRAVELLDI 1208 >gi|312871873|ref|ZP_07731957.1| hypothetical protein HMPREF9219_0396 [Lactobacillus iners LEAF 3008A-a] gi|311092595|gb|EFQ50955.1| hypothetical protein HMPREF9219_0396 [Lactobacillus iners LEAF 3008A-a] Length = 35 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 17/34 (50%), Positives = 24/34 (70%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 FTV + ++G +QG+ SK+AAEQVAA+ LK Sbjct: 1 FTVQLIVAGENISQGIGRSKKAAEQVAASVALKN 34 >gi|322705596|gb|EFY97181.1| hypothetical protein MAA_07477 [Metarhizium anisopliae ARSEF 23] Length = 200 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 20/132 (15%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTLLFN 61 + +E + Y F + +LLE+AL + ++ + L +GD +L L++ + Sbjct: 4 NQIEHALQYKFKDPALLEEALVAAGAGPKKAKTAREKGNKVLALIGDALLRLVLVD--DS 61 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 G+ S R + +E +LA FI+ K+ + + A +E+ Sbjct: 62 VVAGQAPGKGSRRK----------VLQQEWELARFIKT---PFKNKGNVPRTTGAATMEA 108 Query: 122 LIAALYLDGGIE 133 L+ A++LD G + Sbjct: 109 LVGAVWLDSGRD 120 >gi|145550957|ref|XP_001461156.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|74830689|emb|CAI39096.1| Dicer-like ribonuclease with mutated helicase and Rnase III domains [Paramecium tetraurelia] gi|124428989|emb|CAK93783.1| unnamed protein product [Paramecium tetraurelia] Length = 1566 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 78/258 (30%), Gaps = 84/258 (32%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESY-ERL----EF----------- 45 Y E+ I Y F + LL +ALT S ++ Q+ Y E+ EF Sbjct: 1265 YQKFEEIIKYQFNSFELLFQALTDVSFKMIINNEVQQQYMEKFQSKDEFQGWISESELQE 1324 Query: 46 -----------------------LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 LG + + +L S L + L Sbjct: 1325 YIKQIDQMNSIAQSSYQNSDLAILGKSLWDYALMKILNEM--SLDNASLVTLYKILKGIS 1382 Query: 83 TCSQVARELDLASFIRVS-------------SDLRKDVCSFMTSI--------QADVVES 121 + A +L + ++ S + + ++SI + + Sbjct: 1383 FLTYAAIKLKIHQYLNSSFQKQLQSFVDLYEKTKDQSITFHISSIPYNENSIMLRNAFLA 1442 Query: 122 LIAALYLDGGIEVAGTF-----------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 L+ A+Y+D E+A VD+ ++ L+S + + +W FG Sbjct: 1443 LVGAIYIDSDFELAVVLEWIKSLFTQINVDELYQPEFLQSRQRYQFY-----QWYQKHFG 1497 Query: 171 VTPEYKVTFRSGPDHDPR 188 + + P D + Sbjct: 1498 NPFNFDLIKI--PHQDQK 1513 >gi|325073735|gb|ADY76788.1| PP120 [Orf virus] Length = 183 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG A SK+ A A Sbjct: 109 NPVSAVNEFCMMTHRPL-EFCETRSGGEDHCPRFTCTITISGKVVAAANGASKKLARHAA 167 Query: 216 AAEVL 220 A L Sbjct: 168 CASAL 172 >gi|193661999|ref|XP_001947403.1| PREDICTED: microprocessor complex subunit DGCR8-like [Acyrthosiphon pisum] Length = 650 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 8/74 (10%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYK---VTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 + + L E+ P Y+ + P ++ V ++ + G+ Sbjct: 375 MNPNGKSYVSILHEYLQQALKTQPWYEFKELENTETP-----YSATVVLNDVQYGVGLGN 429 Query: 207 SKRAAEQVAAAEVL 220 SK+ A+ AA L Sbjct: 430 SKKQAKLNAAQATL 443 >gi|82582943|gb|ABB84397.1| interferon resistance protein [Orf virus] Length = 166 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG A SK+ A A Sbjct: 92 NPVSAVNEFCMMTHRPL-EFCETRSGGEDHCPRFTCTITISGKVVAAANGASKKLARHAA 150 Query: 216 AAEVL 220 A L Sbjct: 151 CASAL 155 >gi|82582925|gb|ABB84388.1| interferon resistance protein [Orf virus] gi|82582927|gb|ABB84389.1| interferon resistance protein [Orf virus] Length = 166 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG A SK+ A A Sbjct: 92 NPVSAVNEFCMMTHRPL-EFCETRSGGEDHCPRFTCTITISGKVVAAANGASKKLARHAA 150 Query: 216 AAEVL 220 A L Sbjct: 151 CASAL 155 >gi|82582941|gb|ABB84396.1| interferon resistance protein [Orf virus] Length = 166 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG A SK+ A A Sbjct: 92 NPVSAVNEFCMMTHRPL-EFCETRSGGEDHCPRFTCTITISGKVVAAANGASKKLARHAA 150 Query: 216 AAEVL 220 A L Sbjct: 151 CASAL 155 >gi|330844167|ref|XP_003294006.1| hypothetical protein DICPUDRAFT_84511 [Dictyostelium purpureum] gi|325075596|gb|EGC29463.1| hypothetical protein DICPUDRAFT_84511 [Dictyostelium purpureum] Length = 373 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K +L E+ + + YK T G +H F ++ ++G + +K+ +E+ A Sbjct: 4 KVQLNEYLNKRKLPYATYK-TETRGSEHKKDFRSILTVNGRDISSSWKKTKKDSEKECAK 62 Query: 218 EVLK 221 VL+ Sbjct: 63 NVLE 66 >gi|82582945|gb|ABB84398.1| interferon resistance protein [Orf virus] Length = 166 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG A SK+ A A Sbjct: 92 NPVSAVNEFCMMTHRPL-EFSETRAGGEDHCPRFTCTITISGKVVAVADGASKKLARHTA 150 Query: 216 AAEVL 220 A L Sbjct: 151 CASAL 155 >gi|301620037|ref|XP_002939389.1| PREDICTED: hypothetical protein LOC100485785 [Xenopus (Silurana) tropicalis] Length = 1537 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 18/160 (11%) Query: 44 EFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 +F G +L + + N A + + V+ + + R++ L Sbjct: 1347 QFTGSTGAQVLSADEISNSGPQAWLKKDQFLKAAPVTGGRGALLMRKMGWKE----GKGL 1402 Query: 104 RKDVCSFMTSIQ---ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 + + I + L+A G + + K + + Sbjct: 1403 GRHNEGNVDPILIDFKTDRKGLVA-----DGEKASNKLALPMMK------DLSGKHPISA 1451 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 L E + K PE+ + +GP+H RF V ++G Sbjct: 1452 LMELCNKKKWSPPEFVLVDDTGPEHRKRFLFRVTVNGGVY 1491 >gi|82582935|gb|ABB84393.1| interferon resistance protein [Orf virus] Length = 166 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG SK+ A A Sbjct: 92 NPVSAVNEFCMMTHRPL-EFSETRAGGEDHCPRFTCTITISGKVVTVADGASKKLARHNA 150 Query: 216 AAEVL 220 A L Sbjct: 151 CASAL 155 >gi|289183784|ref|YP_003457325.1| dsRNA-binding interferon resistance protein [Pseudocowpox virus] gi|288804256|gb|ADC53921.1| dsRNA-binding interferon resistance protein [Pseudocowpox virus] Length = 180 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH P FT + +SG A SK+ A A Sbjct: 106 NPVSAVNEFCMITHRTL-EFCETRSGGQDHCPNFTCTIVVSGKVIATATGTSKKLARHAA 164 Query: 216 AAEVL 220 A L Sbjct: 165 CATAL 169 >gi|312374197|gb|EFR21805.1| hypothetical protein AND_16335 [Anopheles darlingi] Length = 358 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+ L E+ P Y+ F+ + ++ V I+ L G SK+ A+ Sbjct: 288 NGKSYVCILHEYVQHALRKQPAYE--FKELENAATPYSATVTINELKYGTGYGTSKKQAK 345 Query: 213 QVAAAEVLK 221 AA E L+ Sbjct: 346 SEAARETLE 354 >gi|126722609|ref|NP_001075682.1| interferon-induced, double-stranded RNA-activated protein kinase [Oryctolagus cuniculus] gi|71068410|gb|AAZ23127.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Oryctolagus cuniculus] Length = 547 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 161 LQEWAHAKFGVTPEYKVTF--RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 L K +T Y+ GP RF I G+ +K+ A+Q+AA Sbjct: 104 LINRVAQKAKLTVNYEPCELWEQGP---KRFQYKCRIGLKVYGTGIGSTKQEAKQLAAKS 160 Query: 219 VLKR 222 + Sbjct: 161 AYHK 164 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 EL ++ K + +Y +SGP HD FT V I+ + Sbjct: 13 ELNKYRQ-KHSILLKYHELPQSGPPHDVTFTFKVIINEREFPEAEG 57 >gi|212528380|ref|XP_002144347.1| RNAse III, putative [Penicillium marneffei ATCC 18224] gi|210073745|gb|EEA27832.1| RNAse III, putative [Penicillium marneffei ATCC 18224] Length = 142 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 14/127 (11%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 ++ + SLL ++ + S ++ + L GD L + + Sbjct: 15 IQGLTNRPPNDESLLWESFQAAGYSS--RDGNKNLALPGDAALKFYLI---------MEG 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 ++ +S+ S + S+ EL L +I+ A +E++I A+++ Sbjct: 64 QRINDVVSSIASNDNLSRKGFELGLERYIQ---GNPAQRGKVSNGTMATTLEAIIGAMFI 120 Query: 129 DGGIEVA 135 D G + A Sbjct: 121 DSGFDYA 127 >gi|72255535|ref|NP_001026820.1| 39S ribosomal protein L44, mitochondrial [Rattus norvegicus] gi|71051110|gb|AAH98715.1| Mitochondrial ribosomal protein L44 [Rattus norvegicus] gi|149016242|gb|EDL75488.1| mitochondrial ribosomal protein L44 [Rattus norvegicus] Length = 332 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 11/191 (5%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 + + L G ++ L + F + + N L VA L + + Sbjct: 120 KDNQELFEQGLSFSHRCLTQFLEDEFPNLPTEGIESLVNFLTGEAVVCHVASNLAVEQ-L 178 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155 +S++ + ++I AL G E A F+ + + F Sbjct: 179 TLSAEFPVPQP-----VLRRTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWT 233 Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212 + L E + PE ++T +SG P + V + A+G + AE Sbjct: 234 IVNPMGLLVEELKKRNISAPESRLTRQSGSTTALPLYFVGLYCDKRLIAEGPGETVLVAE 293 Query: 213 QVAAAEVLKRE 223 + AA L++ Sbjct: 294 EEAARVALRKL 304 >gi|115955350|ref|XP_001193629.1| PREDICTED: similar to Staufen, RNA binding protein, homolog 2 (Drosophila), partial [Strongylocentrotus purpuratus] Length = 486 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 3/76 (3%) Query: 150 SGKFRRDAKT--ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SG R+ K+ L A + +KV G H F + + G + S Sbjct: 260 SGGEERNVKSDISLIYEAANLHNLNVVFKVLDERGQPHLKIFKLQCTV-GEFNTESEGPS 318 Query: 208 KRAAEQVAAAEVLKRE 223 K+ A++ AA +L + Sbjct: 319 KKDAKRKAAELMLPKL 334 >gi|115714507|ref|XP_001196524.1| PREDICTED: similar to Staufen, RNA binding protein, homolog 2 (Drosophila), partial [Strongylocentrotus purpuratus] Length = 396 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 3/76 (3%) Query: 150 SGKFRRDAKT--ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SG R+ K+ L A + +KV G H F + + G + S Sbjct: 260 SGGEERNVKSDISLIYEAANLHNLNVVFKVLDERGQPHLKIFKLQCTV-GEFNTESEGPS 318 Query: 208 KRAAEQVAAAEVLKRE 223 K+ A++ AA +L + Sbjct: 319 KKDAKRKAAELMLPKL 334 >gi|321451683|gb|EFX63253.1| hypothetical protein DAPPUDRAFT_335709 [Daphnia pulex] gi|321454090|gb|EFX65276.1| hypothetical protein DAPPUDRAFT_333337 [Daphnia pulex] Length = 121 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 24/42 (57%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLG 47 LE I Y F N+ +L +A TH + + SYE+LE+LG Sbjct: 20 LDQLEIIINYKFNNQLILLEASTHGTFHNPLCSSYEKLEYLG 61 >gi|170056263|ref|XP_001863951.1| ribonuclease iii [Culex quinquefasciatus] gi|167876020|gb|EDS39403.1| ribonuclease iii [Culex quinquefasciatus] Length = 239 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 46/152 (30%) Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L++ ++SLV+ + + +L + S+ S T +AD++E+ + ALY+D Sbjct: 72 LTLLWSSLVNNRNQAVICDDLGMTSYAVYS----NKKADLKTKERADLLEAFLGALYVDK 127 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 G+ A K+ +GP + +T Sbjct: 128 GLNTA----------------------------------------KLIECNGPTNTRVYT 147 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + V A S + E AA + L+ Sbjct: 148 MAVYF--RLLACCNGHSMQQVEINAAKQALEN 177 >gi|154293120|ref|XP_001547110.1| hypothetical protein BC1G_14512 [Botryotinia fuckeliana B05.10] gi|150845657|gb|EDN20850.1| hypothetical protein BC1G_14512 [Botryotinia fuckeliana B05.10] Length = 397 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 3/114 (2%) Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAK 168 M + A V++LI A+YL G A TF++++ R L K + +L + Sbjct: 243 MNNAYASFVKALIGAVYLHAGRAAAKTFIEQHILSRHLDLDKLFQFSQPVRDLARLCARE 302 Query: 169 FGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P ++ +G P F V + + S A A+ LK Sbjct: 303 DFEAPVARILSETGRHSRSPVFVVGIYSGREKLGEAPGASLNEARIRASVAGLK 356 >gi|190346940|gb|EDK39128.2| hypothetical protein PGUG_03225 [Meyerozyma guilliermondii ATCC 6260] Length = 230 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 18/139 (12%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL--- 71 YA ++ L + LTH S + + E+L +G ++L L + + +A E + Sbjct: 71 YAISD-ELALQVLTHKSFGNGIKPYNEKLSAMGSKVLNLYCAKYTTDTPTTANENAIDGK 129 Query: 72 ------SVRFNSLVSAETCSQVARELDLASFIR-----VSSDLRKDVCSFMTSIQADVVE 120 S L A+ L + S + A ++ Sbjct: 130 NVDVLGSPMAKELAGRLALGLFAKSHKLNQVLFWKSYNHSLGFEASG---EMKVSAQMMY 186 Query: 121 SLIAALYLDGGIEVAGTFV 139 +LI A+ G VA F+ Sbjct: 187 ALIGAVTFTHGKTVAEEFI 205 >gi|256074989|ref|XP_002573804.1| tar rna binding protein (trbp) [Schistosoma mansoni] gi|238658992|emb|CAZ30036.1| tar rna binding protein (trbp), putative [Schistosoma mansoni] Length = 356 Score = 51.6 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE K G+TP Y++ GP H+P + + +G A SK+ A+ A+ Sbjct: 10 PISILQEVC-VKKGITPIYELVSNEGPVHEPLYVFLCT-AGPFSATSKGASKKRAKHQAS 67 Query: 217 AEVLKRE 223 +L + Sbjct: 68 YLILLKM 74 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 4/59 (6%) Query: 160 ELQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 LQ+ P Y+ +S P + ++ V + G SK++A++ AA Sbjct: 130 RLQDLCQKNTWPPPSYEFLTIPQSTPSGN-EYSCKVRLW-KWTHTGFGNSKKSAKRRAA 186 >gi|226480664|emb|CAX73429.1| Trans-activation-responsive RNA-binding protein [Schistosoma japonicum] Length = 358 Score = 51.6 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE K G+TP Y++ GP H+P + + +G A SK+ A+ A+ Sbjct: 10 PISILQEVC-VKKGITPLYELVSSEGPIHEPLYVFLCT-AGPFSATSKGASKKRAKHQAS 67 Query: 217 AEVLKRE 223 +L + Sbjct: 68 YLILLKM 74 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 11/97 (11%) Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK-VTFR 180 ++ + ++D +V + KQ + LQE P Y+ +T + Sbjct: 98 VLGSDFMDSLDDVELDGLPNRIKQEE------EGNFVGRLQELCQKNIWPPPSYEFLTIQ 151 Query: 181 SGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAA 216 S P + ++ G SK++A++ AA Sbjct: 152 STPSGN---EYGCKVRLWKWTHTGFGNSKKSAKRRAA 185 >gi|33415077|gb|AAQ18046.1| double-stranded RNA-binding protein [Bovine papular stomatitis virus] Length = 182 Score = 51.6 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH P FT + +SG A SK+ A A Sbjct: 108 NPVSAVNEFCMITHRPL-EFCETRSGGQDHCPNFTCTIMVSGKVIATADGTSKKMARHAA 166 Query: 216 AAEVL 220 A L Sbjct: 167 CATAL 171 >gi|33415075|gb|AAQ18045.1| double-stranded RNA-binding protein [Tillquist parapoxvirus] Length = 180 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH P FT + +SG A S++ A A Sbjct: 106 NPVSAVNEFCMITHRPL-EFCETRSGGQDHCPNFTCTIVVSGKLIATATGTSRKLARHAA 164 Query: 216 AAEVL 220 A L Sbjct: 165 CATAL 169 >gi|292628574|ref|XP_001342694.3| PREDICTED: tRNA-dihydrouridine synthase 2-like [Danio rerio] Length = 504 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K L EW+ + P Y+ RS D F V ++ + + SK+ AEQ A Sbjct: 373 PKMFLLEWSRKEKLEQPVYETEQRSQ---DRGFQSTVIVADKKYRSTLWEKSKKFAEQAA 429 Query: 216 AAEVLKREGI 225 A L+ G+ Sbjct: 430 ALVCLRTLGL 439 >gi|261190696|ref|XP_002621757.1| RNAse III [Ajellomyces dermatitidis SLH14081] gi|239591180|gb|EEQ73761.1| RNAse III [Ajellomyces dermatitidis SLH14081] Length = 152 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 9/126 (7%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 R S E+ GY F N L AL + ++ ++ L +GD L L++ + + Sbjct: 15 RLSNTEEATGYIFTNPELCLDAL--RTAGYTPGGGHKGLAQVGDAALRLVLVMVGYEK-- 70 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A +++ S ++ E L + + + I A V++++ Sbjct: 71 GASREQINDALRVRASNIHLARQGFEKCLEKCVYRTEGVVVS-----QKIMATTVQAVLG 125 Query: 125 ALYLDG 130 A+Y+D Sbjct: 126 AVYIDC 131 >gi|254577996|ref|XP_002494984.1| ZYRO0B00704p [Zygosaccharomyces rouxii] gi|238937874|emb|CAR26051.1| ZYRO0B00704p [Zygosaccharomyces rouxii] Length = 244 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 18/140 (12%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL---------- 71 L+ + TH S +H + E+L LG + L + H D Sbjct: 81 LVLQCFTHKSFAHGSKPYNEKLNVLGSQFLKYQAAIHSLRHKDQLSPVPSDNVQQPLNGL 140 Query: 72 ------SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--TSIQADVVESLI 123 + ++S + +Q +E L S I + ++ + +L+ Sbjct: 141 NFTNLGTAVAKLIISKISTAQYIKEKQLDSLIFWKMRDATKDGRYNGENTVFTSALNALV 200 Query: 124 AALYLDGGIEVAGTFVDKYW 143 A+ + G E A FV + Sbjct: 201 GAILISNGPEKAANFVQQVL 220 >gi|158293152|ref|XP_314491.4| AGAP010518-PA [Anopheles gambiae str. PEST] gi|157016821|gb|EAA09936.5| AGAP010518-PA [Anopheles gambiae str. PEST] Length = 849 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 22/53 (41%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 LK + + L E+A P Y++ SGP H F V ++GL Sbjct: 768 LKINTDGKHPVSILCEYATKHKWNAPMYELVHESGPGHAKNFIFKVLVNGLEY 820 >gi|326471909|gb|EGD95918.1| hypothetical protein TESG_03381 [Trichophyton tonsurans CBS 112818] gi|326477227|gb|EGE01237.1| hypothetical protein TEQG_00290 [Trichophyton equinum CBS 127.97] Length = 160 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 6/127 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 R +E + Y F +++L AL + + L +G ++ L + T ++ Sbjct: 15 RTKAMEDLLEYRFKDKTLPLSALNLPG-RRTSIKDNTGLAQVGKAVMELFLITDGYDK-- 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +S ++ + + L + +R + A V++L+ Sbjct: 72 DMDPENISTLLTFVLDNSKLADIGTNKGLGRCMM---GMRSSTANLTPLYTARTVQALMG 128 Query: 125 ALYLDGG 131 A+YLD Sbjct: 129 AVYLDSD 135 >gi|126338334|ref|XP_001374261.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 332 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 76/241 (31%), Gaps = 29/241 (12%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-----------------ESYERLEFLG 47 R+ F+ LL+ A + S + + L G Sbjct: 72 EVQAFCHRLHENFS-LELLKTAFINRCYIESEETRRQKLGVDKEAVALNLRDNQELSEQG 130 Query: 48 DRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 ++ L + + S + + L S + VAR L + + +S++ Sbjct: 131 RAFSQTCLTQFLGDAYPSLPSEGIKAIVDFLTSEDIVCHVARNLAVEQ-LTLSAEFPVPQ 189 Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQE 163 + ++I AL G + F+ + + F + L + Sbjct: 190 M-----VLQQTFFAVIGALLQSSGPQKTSIFIRDFLITQMTGKELFEMWKVVNPMGLLVD 244 Query: 164 WAHAKFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 245 ELTKRNISAPEPRITRQSGSSTVLPLYFVGLYCEKKLIAEGPGETVLVAEEEAARVALRK 304 Query: 223 E 223 Sbjct: 305 L 305 >gi|239614866|gb|EEQ91853.1| RNAse III [Ajellomyces dermatitidis ER-3] gi|327352306|gb|EGE81163.1| RNAse III [Ajellomyces dermatitidis ATCC 18188] Length = 152 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 9/126 (7%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 R S E+ GY F N L AL + ++ ++ L +GD L L++ + + Sbjct: 15 RLSDTEEATGYIFTNPELCLDAL--RTAGYTPGGGHKGLAQVGDAALRLVLVMVGYEK-- 70 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A +++ S ++ E L + + + I A V++++ Sbjct: 71 GASREQINDALRVRASNIHLARQGFEKCLEKCVYRTEGVVVS-----QKIMATTVQAVLG 125 Query: 125 ALYLDG 130 A+Y+D Sbjct: 126 AVYIDC 131 >gi|307207077|gb|EFN84886.1| tRNA-dihydrouridine synthase 2-like [Harpegnathos saltator] Length = 512 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 6/70 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 KT L +W P Y +D F VV + G + +K+ AEQ A Sbjct: 433 PKTRLCKWTKDHHKKMPVYDTRK-----NDKLFCSVVTVDGRKYGSSFWEKNKKWAEQGA 487 Query: 216 AAEVLKREGI 225 A L GI Sbjct: 488 ALVCLYFLGI 497 >gi|145501763|ref|XP_001436862.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124404006|emb|CAK69465.1| unnamed protein product [Paramecium tetraurelia] Length = 177 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 25/166 (15%) Query: 16 AFANRSLLEKALT----HSSISHSYQES------YERLEFLG-DRILGLLISTLLFNHFD 64 F + LL+KA+T H +++ E L LG D I F Sbjct: 16 EFRHPELLKKAMTFKQYHQEYMSRNKDNPLKQGINENLIELGQDLIDFYYNDFFFFQDLP 75 Query: 65 SAKE------GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 + E+ ++S + + +A +L L S + VS + D + I A Sbjct: 76 NKTHKTFKTYSEIRRLKQLVLSEKNLADIAVQLGLKSQMFVSINPNSD-LKNNSKILAQT 134 Query: 119 VESLIAALYLD--GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 ++++I A Y D + V + + S K LQ Sbjct: 135 LKAVIGAQYFDKKKDLNVLRDLLQVLFLDLIKISLV-----KNSLQ 175 >gi|330930517|ref|XP_003303063.1| hypothetical protein PTT_15099 [Pyrenophora teres f. teres 0-1] gi|311321187|gb|EFQ88819.1| hypothetical protein PTT_15099 [Pyrenophora teres f. teres 0-1] Length = 269 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 28/145 (19%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---------------------HF 63 A+TH S H Q +RL +LG RI+ L S L + Sbjct: 111 LAVTHKSFEHGKQGFNDRLAYLGRRIVELQTSQALISAPQEYQWPRDAMGKPKPDEFGRK 170 Query: 64 DSAKE------GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQA 116 G + + ++S + +A + L R + S + ++ Sbjct: 171 PYLHPALNGLQGLTNEAESLILSKSRLAPIAEQYGLDKVTRWKPMRADNLKGSGIETVLM 230 Query: 117 DVVESLIAALYLDGGIEVAGTFVDK 141 + +++ A+ L+ G EVA V + Sbjct: 231 TTLYAIVGAVALERGGEVANKLVQE 255 >gi|194210388|ref|XP_001489530.2| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Equus caballus] Length = 1272 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +FT V + G GM S K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFTCEVRVEGYNY-TGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 238 AAQSCALSLVRQL 250 >gi|194758212|ref|XP_001961356.1| GF13828 [Drosophila ananassae] gi|190622654|gb|EDV38178.1| GF13828 [Drosophila ananassae] Length = 1339 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L E+ +K + P+ V ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYEYC-SKSRIEPKLDV-RQTGPKNRQRFLCEVRVDQNNYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210 +AK L + A +YK T GPDH F + I A+ +K+A Sbjct: 172 NAKDRLNMYKQANNIRD-DYKYTPV-GPDHARSFMAELSIFVPALKRKVTARETGSNKKA 229 Query: 211 AEQVAAAEVLKRE 223 A + A ++++ Sbjct: 230 ASKSCALSLVRQL 242 >gi|221114051|ref|XP_002158541.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 615 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 14/101 (13%) Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ---EWAHAKFGVTPEYKVTFR-- 180 +Y D + +++ K LQ E+ F T + Sbjct: 356 IYTDADFDEQAALTTDNQRKKKQAVPVI----KNPLQKLYEYCQLHFKKTIAFNKLDECF 411 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 SG F V V + L G +K+ A+ AA L+ Sbjct: 412 SG-----LFYVEVLVGFLRYGVGQGDNKKNAKYAAAQATLE 447 >gi|326429032|gb|EGD74602.1| DEAH box polypeptide 34 [Salpingoeca sp. ATCC 50818] Length = 1912 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 4/78 (5%) Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS--GL 198 + ++ + + + AK+ + E+ A P+ V ++GP FT + Sbjct: 804 ELYRPPRMPRAEAGKTAKSVVMEYCQALKRTKPK-VVVKQTGPQEASTFTAYCRVDWFDQ 862 Query: 199 AP-AQGMDCSKRAAEQVA 215 QG D K+ AE A Sbjct: 863 PIVFQGTDKRKKDAEHRA 880 Score = 44.7 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 16/42 (38%) Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H P F V + L K+ A Q A + ++ Sbjct: 28 GPPHMPTFECTVSVGSLVSCSARGGGKKTAMQDACKQAVEAL 69 >gi|145486836|ref|XP_001429424.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|74830341|emb|CAI39051.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia] gi|124396516|emb|CAK62026.1| unnamed protein product [Paramecium tetraurelia] Length = 725 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 13/121 (10%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N +E+A++ S + Q +Y+ LE LGD ++ L S +LF E LS L Sbjct: 343 NLDRVEEAISCPSFNS--QRNYQNLEMLGDVVIKYLTSAMLFEDSKYKTENTLSSARVRL 400 Query: 79 VSAETCSQVARELDLASFI------RVSSDLRKDVCSFMTSIQ-----ADVVESLIAALY 127 ++ + S + L L + ++ + + + S AD+ E+L A Y Sbjct: 401 ITNKHLSSIYGNLKLNAMNFKINSKKLLNHMMMIINEHEDSKLSQKQQADIYEALCGACY 460 Query: 128 L 128 + Sbjct: 461 I 461 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 61/183 (33%), Gaps = 54/183 (29%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI-------STL 58 + + +G +L+ +A+T + +ERLEF GD IL LL+ Sbjct: 530 FEEFQDYLGCK---LNLIAEAMT--------VDQFERLEFFGDAILELLVIVNVHKECEK 578 Query: 59 LFNHFDS--------------AKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDL 103 L+ + G L SL+ + +A + + R + ++ Sbjct: 579 LYYNPRQQQLCREGKITQKLLLCPGMLHTAKISLLDSGFMGTMAIYHNFHQYARNLPKEI 638 Query: 104 RKDVCS---------------------FMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 + + + I +D+ ES+ A + ++ G E + Sbjct: 639 QNSIKKALALLRQDQFTDFRRINQYSQQIPKIMSDLWESVAACILVEYGWEKVIEIYGEM 698 Query: 143 WKQ 145 +K Sbjct: 699 YKP 701 >gi|208690885|gb|ACI31218.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Erythrocebus patas] Length = 550 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 6/59 (10%) Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 A K T YK + GP+ F +I + G +K+ A+Q+AA L Sbjct: 108 IAQKKRL-TVNYKQCTSGVHGPEG---FHYKCKIGEKEYSIGTGSTKQEAKQLAAKLAL 162 Score = 37.0 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 EL ++ + G+T Y+ +GP HD RFT V + S Sbjct: 13 ELNKYRQKQ-GITFSYQELPNTGPPHDRRFTFRVVTDRREFPEAEGRS 59 >gi|208690873|gb|ACI31212.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Chlorocebus aethiops] Length = 550 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 6/59 (10%) Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 A K T YK + GP+ F +I + G +K+ A+Q+AA L Sbjct: 108 IAQKKRL-TVNYKQCTSGVHGPEG---FHYKCKIGEKEYSIGTGSTKQEAKQLAAKLAL 162 Score = 37.0 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 EL ++ + G+T Y+ +GP HD RFT V + S Sbjct: 13 ELNKYRQKQ-GITFSYQELPNTGPPHDRRFTFRVVTDRREFPEAEGRS 59 >gi|54289574|gb|AAV32090.1| interferon-induced dsRNA-dependent protein kinase [Chlorocebus aethiops] Length = 550 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 6/59 (10%) Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 A K T YK + GP+ F +I + G +K+ A+Q+AA L Sbjct: 108 IAQKKRL-TVNYKQCTSGVHGPEG---FHYKCKIGEKEYSIGTGSTKQEAKQLAAKLAL 162 Score = 37.0 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 EL ++ + GVT Y+ +GP HD RFT V + S Sbjct: 13 ELNKYRQKQ-GVTFSYQELPNTGPPHDRRFTFRVVTDRREFPEAEGRS 59 >gi|326469157|gb|EGD93166.1| 60S ribosomal protein L3 [Trichophyton tonsurans CBS 112818] Length = 375 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 3/95 (3%) Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTP 173 A+ V +L+ A+YL GG A TF ++++K R L + +L + + P Sbjct: 246 ANFVRALMGAVYLHGGRRAAKTFFEEHFKSRQLPIADLFGFTEPTRDLSKLCKREGFEAP 305 Query: 174 EYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCS 207 KV +G P F V + +G S Sbjct: 306 VAKVISETGRLSRHPVFIVGIFSGKDKLGEGAGSS 340 >gi|156554948|ref|XP_001602039.1| PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] Length = 350 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQ 213 + + L E+ + P Y+ GPD + +V ++G+ + +K+ A+ Sbjct: 277 KHPVSLLGEYCSKRKYGAPRYQEFCECGPDKKKSYLFMVVVNGITYKPAVANPNKKLAKV 336 Query: 214 VAAAEVLKREGIW 226 AA L+ G+ Sbjct: 337 EAAQLCLQSLGVL 349 >gi|194764929|ref|XP_001964580.1| GF22976 [Drosophila ananassae] gi|190614852|gb|EDV30376.1| GF22976 [Drosophila ananassae] Length = 649 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K+ L E+ P Y+ F+ + ++ V + L G SK+ A+ Sbjct: 373 NGKSYVCILHEYVQHALKTQPTYE--FKELQNAATPYSATVSVKNLKYGTGFGTSKKQAK 430 Query: 213 QVAAAEVLK 221 AA L+ Sbjct: 431 SEAARITLE 439 >gi|326485368|gb|EGE09378.1| 54S ribosomal protein L3 [Trichophyton equinum CBS 127.97] Length = 390 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 3/95 (3%) Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTP 173 A+ V +L+ A+YL GG A TF ++++K R L + +L + + P Sbjct: 246 ANFVRALMGAVYLHGGRRAAKTFFEEHFKSRQLPIADLFGFTEPTRDLSKLCKREGFEAP 305 Query: 174 EYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCS 207 KV +G P F V + +G S Sbjct: 306 VAKVISETGRLSRHPVFIVGIFSGKDKLGEGAGSS 340 >gi|312371610|gb|EFR19749.1| hypothetical protein AND_21879 [Anopheles darlingi] Length = 1007 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 + +K + + L E+A + P Y++ SGP H F V ++GL Sbjct: 918 RSRFPPNQVKVCTEGKHPVSILGEYASKRKWNAPMYELVHESGPGHAKNFIFKVLVNGLE 977 Query: 200 P 200 Sbjct: 978 Y 978 >gi|315049681|ref|XP_003174215.1| 54S ribosomal protein L3 [Arthroderma gypseum CBS 118893] gi|311342182|gb|EFR01385.1| 54S ribosomal protein L3 [Arthroderma gypseum CBS 118893] Length = 391 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 3/95 (3%) Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTP 173 A+ V +L+ A+YL GG A F ++++K R L + +L + + P Sbjct: 247 ANFVRALMGAVYLHGGRRAAKAFFEEHFKSRQLPIADLFGFTEPTRDLSKLCKREGFEAP 306 Query: 174 EYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCS 207 KV +G P F V + +G S Sbjct: 307 VAKVISETGRLSRHPVFIVGIFSGKDKLGEGAGSS 341 >gi|158341011|ref|YP_001522178.1| exoribonuclease II [Acaryochloris marina MBIC11017] gi|158311252|gb|ABW32864.1| exoribonuclease II [Acaryochloris marina MBIC11017] Length = 623 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 8/68 (11%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVA 215 + L E E+++ H+ F + + G+ SK+ A+ A Sbjct: 547 SLLMELCQGLQWPQAEFEIVE-----HEQGFHCECRLKVDDEVIIGSGIASSKKTAKHRA 601 Query: 216 AAEVLKRE 223 A V+++ Sbjct: 602 ARPVVEQL 609 >gi|296863416|pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular Implications Processing Length = 76 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 24/63 (38%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y+ +FT VEI G+ +K+ AE A Sbjct: 7 KNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGR 66 Query: 218 EVL 220 L Sbjct: 67 TAL 69 >gi|302505978|ref|XP_003014946.1| hypothetical protein ARB_06705 [Arthroderma benhamiae CBS 112371] gi|302660380|ref|XP_003021870.1| hypothetical protein TRV_04047 [Trichophyton verrucosum HKI 0517] gi|291178517|gb|EFE34306.1| hypothetical protein ARB_06705 [Arthroderma benhamiae CBS 112371] gi|291185788|gb|EFE41252.1| hypothetical protein TRV_04047 [Trichophyton verrucosum HKI 0517] Length = 390 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 3/95 (3%) Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTP 173 A+ V +L+ A+YL GG A TF ++++K R L + +L + + P Sbjct: 246 ANFVRALMGAVYLHGGRRAAKTFFEEHFKSRQLPIADLFGFTEPTRDLSKLCKREGFEAP 305 Query: 174 EYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCS 207 KV +G P F V + +G S Sbjct: 306 VAKVISETGRLSRHPVFIVGIFSGKDKLGEGAGSS 340 >gi|297740221|emb|CBI30403.3| unnamed protein product [Vitis vinifera] Length = 853 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%) Query: 161 LQEWAHAKFGVTPEYK-VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 LQE + E++ V S D +F+V V +G GM +++ A+Q AA Sbjct: 679 LQEIG-RRCSSKVEFRSVVSTSK---DLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENA 734 Query: 220 L 220 L Sbjct: 735 L 735 >gi|225440662|ref|XP_002274594.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 859 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%) Query: 161 LQEWAHAKFGVTPEYK-VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 LQE + E++ V S D +F+V V +G GM +++ A+Q AA Sbjct: 685 LQEIG-RRCSSKVEFRSVVSTSK---DLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENA 740 Query: 220 L 220 L Sbjct: 741 L 741 >gi|146419064|ref|XP_001485497.1| hypothetical protein PGUG_03225 [Meyerozyma guilliermondii ATCC 6260] Length = 230 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 18/145 (12%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL--- 71 YA ++ L + LTH S + + E+L +G ++L L + + +A E + Sbjct: 71 YAISD-ELALQVLTHKSFGNGIKPYNEKLSAMGLKVLNLYCAKYTTDTPTTANENAIDGK 129 Query: 72 ------SVRFNSLVSAETCSQVARELDLASFIR-----VSSDLRKDVCSFMTSIQADVVE 120 S L A+ L + S + A ++ Sbjct: 130 NVDVLGSPMAKELAGRLALGLFAKSHKLNQVLFWKSYNHSLGFEASG---EMKVSAQMMY 186 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ 145 +LI A+ G VA F+ + + Sbjct: 187 ALIGAVTFTHGKTVAEEFILEKLMK 211 >gi|322786736|gb|EFZ13103.1| hypothetical protein SINV_10097 [Solenopsis invicta] Length = 159 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE K G P Y +S D +F V L A G+ SK+ A+Q AA +L Sbjct: 11 LQEVL-IKEGCAPSYNFEEKSTNTIDRQFLCNVSCKELN-ASGIGISKKEAKQNAAKNML 68 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 4/44 (9%) Query: 156 DAKTELQEWAHAKFGVTPE---YKVTFRSGPDHDPRFTVVVEIS 196 + +LQE+ + + P+ Y++ GP H FT+ V + Sbjct: 114 NYVGKLQEFCQQQ-KINPKDILYELISEEGPRHLRTFTIRVNVG 156 >gi|33322517|gb|AAQ06986.1|AF496312_1 ribonuclease III [Lactobacillus delbrueckii subsp. lactis] Length = 41 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 17/34 (50%) Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V V + G A G +K+ AEQ AA+ L+ Sbjct: 1 VEVLVDGKKXASGEGRNKKKAEQDAASHALEHLN 34 >gi|82582931|gb|ABB84391.1| interferon resistance protein [Orf virus] Length = 166 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG + SK+ A A Sbjct: 92 NPVSAVNEFCMMTRRPL-EFCETRSGGEDHCPRFTCTITISGKVVSVADGASKKLARHAA 150 Query: 216 AAEVL 220 A L Sbjct: 151 CASAL 155 >gi|82582929|gb|ABB84390.1| interferon resistance protein [Orf virus] Length = 166 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG SK+ A A Sbjct: 92 NPVSAVNEFCMMTHRPL-EFSETRAGGEDHCPRFTCTITISGKVVTVADGASKKLARHTA 150 Query: 216 AAEVL 220 A L Sbjct: 151 CASAL 155 >gi|82582921|gb|ABB84386.1| interferon resistance protein [Orf virus] gi|82582923|gb|ABB84387.1| interferon resistance protein [Orf virus] Length = 166 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG SK+ A A Sbjct: 92 NPVSAVNEFCMMTHRPL-EFSETRAGGEDHCPRFTCTITISGKVVTVADGASKKLARHTA 150 Query: 216 AAEVL 220 A L Sbjct: 151 CASAL 155 >gi|82582939|gb|ABB84395.1| interferon resistance protein [Orf virus] Length = 166 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG SK+ A A Sbjct: 92 NPVSAVNEFCMMTHRPL-EFSETRAGGEDHCPRFTCTITISGKVVTVADGASKKLARHTA 150 Query: 216 AAEVL 220 A L Sbjct: 151 CASAL 155 >gi|82582937|gb|ABB84394.1| interferon resistance protein [Orf virus] Length = 166 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG SK+ A A Sbjct: 92 NPVSAVNEFCMMTHRPL-EFSETRAGGEDHCPRFTCTITISGKVVTVADGASKKLARHTA 150 Query: 216 AAEVL 220 A L Sbjct: 151 CASAL 155 >gi|316962794|gb|EFV48776.1| ribosome biogenesis protein BOP1 [Trichinella spiralis] Length = 292 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + L E K G+TP Y++ G D F + I + + G SK+ A+Q AA Sbjct: 207 SLLHEIC-GKKGLTPMYELLTSQGQGVDSLFVYRLCIDSVV-STGRGKSKKLAKQNAA 262 >gi|293335075|ref|NP_001167848.1| hypothetical protein LOC100381550 [Zea mays] gi|223944409|gb|ACN26288.1| unknown [Zea mays] Length = 264 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 15/89 (16%) Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 Q+ R+ A++ L E A + PE+++ GP H +FT V I Sbjct: 164 INQKEYHGDMVRKTARSFLYELCAANYWKPPEFELCNDEGPSHLRKFTCKVLIE----IT 219 Query: 203 GMDCS-----------KRAAEQVAAAEVL 220 G S KRAA++ AA L Sbjct: 220 GTSVSLLECYSDPKLQKRAAQEHAAEGAL 248 Score = 38.5 bits (89), Expect = 0.75, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 8/71 (11%) Query: 156 DAKTELQEWAHAKF--GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAE 212 D EL+E PE T +G H V V I+G + + + + A Sbjct: 4 DPMRELRETCQYNGFDLGLPE--PTKYNGEFHVK---VEVNINGKMISCTAANRNSKDAR 58 Query: 213 QVAAAEVLKRE 223 +VAA E L + Sbjct: 59 KVAAQETLSKL 69 >gi|2984731|gb|AAC08018.1| interferon resistance determinant protein [Orf virus] gi|74230732|gb|ABA00537.1| DsRNA-binding, interferon resistance [Orf virus] Length = 183 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG A SK+ A A Sbjct: 109 NPVSAVNEFCMMTHRPL-EFCETRAGGEDHCPRFTCTITISGKVVAVADGASKKLARHTA 167 Query: 216 AAEVL 220 + L Sbjct: 168 CSSAL 172 >gi|282856560|ref|ZP_06265833.1| double-stranded RNA-binding domain protein [Pyramidobacter piscolens W5455] gi|282585603|gb|EFB90898.1| double-stranded RNA-binding domain protein [Pyramidobacter piscolens W5455] Length = 365 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%) Query: 146 RALKSGKFRRDA--KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 R L+ + K LQ P Y G +P F V +++SG G Sbjct: 81 RDLELAGLKNSPELKGRLQTCCERLGIGQPHYVDLPSPG-GKNPLFFVELQLSGEPIVNG 139 Query: 204 MDCSKRAAEQVAAAEVLK 221 SKRAA Q AA ++L+ Sbjct: 140 SGQSKRAAGQAAAWKMLQ 157 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 8/53 (15%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA------E--QVAAAE 218 EY++ + GP+H P FT +G A+ SK+ A E + AA + Sbjct: 20 EYRIVAKEGPEHKPVFTAAAFRNGARVAEAGGPSKKDALKALVREVGKAAARQ 72 >gi|256080367|ref|XP_002576453.1| hypothetical protein [Schistosoma mansoni] gi|238661721|emb|CAZ32690.1| expressed protein [Schistosoma mansoni] Length = 764 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-----GMDCSKRAAEQVAAAEVLK 221 SGP H+ F V V I+ + G+ S + A ++AA L+ Sbjct: 33 EESGPFHNKVFRVSVIINHHSLKSSEIYYGVGSSVKEARRMAAESALQ 80 >gi|221113037|ref|XP_002167363.1| PREDICTED: similar to neuron-specific staufen [Hydra magnipapillata] Length = 493 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + L E A + P YKV SGP H F V + + P +G+ S Sbjct: 8 SILYELA-KTNRLLPVYKVVADSGPPHQKTFQVHLYVGCHGPFEGIGNS 55 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVA 215 + L E A + SGP H F V E++ + M K+ A+ +A Sbjct: 199 YISLLYEKA-VLHNFQIHFTTIHESGPAHLRFFHVKCEVNDKETVGEAMG--KKNAKNIA 255 Query: 216 AAEVLK 221 A ++LK Sbjct: 256 AEKMLK 261 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 2/71 (2%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + T L + + Y + G F + I+ + G SKR A+ Sbjct: 291 NPVTYLTQLIQLRKEPPVTYTMKAIPGDQSGALLFQIEAAITNFK-SVGCGHSKREAKAN 349 Query: 215 AAAEVLKREGI 225 AA +LK GI Sbjct: 350 AAMNLLKSLGI 360 >gi|164658275|ref|XP_001730263.1| hypothetical protein MGL_2645 [Malassezia globosa CBS 7966] gi|159104158|gb|EDP43049.1| hypothetical protein MGL_2645 [Malassezia globosa CBS 7966] Length = 294 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 55/150 (36%), Gaps = 20/150 (13%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA--------KEGELS 72 +L+ ALTH S H Q RL F+G R L +S F+ + A L Sbjct: 117 TLVSHALTHESWMHGMQGHNRRLAFIGRRALKTYLSLFFFDILEHARRTNSSVSDVEYLQ 176 Query: 73 VRFNS------LVSAETCSQV-ARELDLASFIRVSSDLRKDVCSFMT-----SIQADVVE 120 +S + S V A L L +R S +R D S ++ VE Sbjct: 177 NLLSSQQHVDDIASTHHLGIVSAANLCLEKVMRWHSTVRMDPVSGPQESGLFKVRGSCVE 236 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 LI A+Y G +VA F ++ Sbjct: 237 GLIGAIYHYKGAQVAQQFFLSRILLPLTEA 266 >gi|327268577|ref|XP_003219073.1| PREDICTED: hypothetical protein LOC100565234 [Anolis carolinensis] Length = 1126 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 14/183 (7%) Query: 45 FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 F G +L S L N A + + VS +Q+ R++ R L Sbjct: 938 FTGSTGAQVLSSEQLSNSGPQAWVKKDQFLRAAPVSGGMGAQLMRKMGW----REGEGLG 993 Query: 105 KDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 K+ I D ++ D G+ G K + + + L E Sbjct: 994 KNKEGNKEPILVD-FKT-------DRKGLVAVGEKTQKRRGPFSAVKDLSGKHPVSALLE 1045 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 + + P + + + P++ F V ++G+ + +K+ A+ VAA L+ Sbjct: 1046 VCNKRRWSPPVFVLVNDNRPEYRKNFLFKVMVNGVEHKPTFVSPNKKHAKAVAATVALQA 1105 Query: 223 EGI 225 G+ Sbjct: 1106 LGL 1108 >gi|331219058|ref|XP_003322206.1| ATP-dependent RNA helicase A [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309301196|gb|EFP77787.1| ATP-dependent RNA helicase A [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1575 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 3/92 (3%) Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH-DPRF--TVVV 193 + K+W ++ ++ K L + P+Y P P F TV + Sbjct: 83 QEIRKFWTANLPPRPEWSQNPKGILNNFCQHLTHPLPKYHSQQVILPGFTQPLFRATVHL 142 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 EI+ G D SK+ AE++AA V + G+ Sbjct: 143 EIAPDIVGIGDDLSKKEAEKIAALSVCFQLGM 174 >gi|301170840|dbj|BAJ12034.1| virus interferon resistance [Orf virus] Length = 183 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG A SK+ A A Sbjct: 109 NPVSAVNEFCMMTHRPL-EFSETRAGGEDHCPRFTCTITISGKVVAAADGASKKLARHTA 167 Query: 216 AAEVL 220 + L Sbjct: 168 CSSAL 172 >gi|118090288|ref|XP_420624.2| PREDICTED: similar to testis nuclear RNA binding protein [Gallus gallus] Length = 570 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 D + K + + L +A ++ + ++K T +G F + + G+ Sbjct: 79 DAWLADLIAGYEKGTVNPVSALHRFAQ-RYSMQLDFKETGVAGHAISSYFGISAVLDGVY 137 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ SK+ ++Q AA L Sbjct: 138 YKTGLGRSKKESKQSAAKLALDEL 161 >gi|311246431|ref|XP_003122205.1| PREDICTED: spermatid perinuclear RNA-binding protein-like [Sus scrofa] Length = 619 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 +YK+ +SGP H P FT+ V++ G + SK+ A+ Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAK 440 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 459 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 505 >gi|73968133|ref|XP_863822.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 7 [Canis familiaris] Length = 619 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 +YK+ +SGP H P FT+ V++ G + SK+ A+ Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAK 440 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 459 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 505 >gi|302698221|ref|XP_003038789.1| expressed protein [Schizophyllum commune H4-8] gi|300112486|gb|EFJ03887.1| expressed protein [Schizophyllum commune H4-8] Length = 409 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 62/161 (38%), Gaps = 11/161 (6%) Query: 25 KALTHSSISHS-YQESYERLEFLGDRILGLLISTLLF-NHFDSAKEGELSVRFNSLVSAE 82 +A TH S+S + +L LG +L ++ LLF + E+ + L++ + Sbjct: 117 EAFTHRSLSRPGHIIDGSQLAVLGLSVLDTTMTILLFRQQLPLLTDAEMVAKREELLTLD 176 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q L +R + + + + V ++ A+Y+D GI ++ + Sbjct: 177 KIEQWTVAYGLMDKLRCAPAAYASLKTAPERYR--VFLAVAGAIYVDHGILTMQNWLGQL 234 Query: 143 WKQRALKSGKFRRDAKTEL-----QEWAHAKFGVT--PEYK 176 + + + + Q+++ + T PEY+ Sbjct: 235 VYGESYAEEVAPPEPASTMPPQKKQKFSRGRGCSTRPPEYQ 275 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 7/61 (11%) Query: 168 KFGVTPEYKVTFRSGP----DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K GV EY+ + GP H + +V + +G+ +G +K+ A++ AA + Sbjct: 350 KRGVRVEYETEGQMGPNQTTAH---WIMVCKANGIPKGRGFGKTKQIAKEFAARQAFTAL 406 Query: 224 G 224 G Sbjct: 407 G 407 >gi|66807247|ref|XP_637346.1| hypothetical protein DDB_G0287135 [Dictyostelium discoideum AX4] gi|60465766|gb|EAL63842.1| hypothetical protein DDB_G0287135 [Dictyostelium discoideum AX4] Length = 398 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 23/147 (15%) Query: 8 TLEKRIGYAFAN--------RSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTL 58 L K + F+ ++ +LTH S+ + +++ +L F G+ IS Sbjct: 126 KLLKDLNIKFSKNGNDDFEIPKIIIDSLTHCPSLQNEAEQN--KLRFFGELCYRHSISDS 183 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 F+ E S+ S+ + +++ L+ FIR + + SF SI Sbjct: 184 -EFSFNDQSIFE--EFRESIKSSYFLRERCKDIGLSEFIRF----QINSNSFYKSIYFSH 236 Query: 119 VE-----SLIAALYLDGGIEVAGTFVD 140 I ALYL+ + F+ Sbjct: 237 YSYRCLIKFIGALYLETDFKTVRNFIH 263 >gi|301170812|dbj|BAJ12020.1| virus interferon resistance [Orf virus] gi|301170814|dbj|BAJ12021.1| virus interferon resistance [Orf virus] gi|301170820|dbj|BAJ12024.1| virus interferon resistance [Orf virus] gi|301170822|dbj|BAJ12025.1| virus interferon resistance [Orf virus] gi|301170834|dbj|BAJ12031.1| virus interferon resistance [Orf virus] gi|301170836|dbj|BAJ12032.1| virus interferon resistance [Orf virus] gi|301170838|dbj|BAJ12033.1| virus interferon resistance [Orf virus] gi|301170842|dbj|BAJ12035.1| virus interferon resistance [Orf virus] gi|301170844|dbj|BAJ12036.1| virus interferon resistance [Orf virus] gi|301170846|dbj|BAJ12037.1| virus interferon resistance [Orf virus] gi|301170848|dbj|BAJ12038.1| virus interferon resistance [Orf virus] gi|301170850|dbj|BAJ12039.1| virus interferon resistance [Orf virus] Length = 183 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG A SK+ A A Sbjct: 109 NPVSAVNEFCMMTHRPL-EFCETRSGGEDHCPRFTCTITISGKVVAAADGASKKLARHTA 167 Query: 216 AAEVL 220 + L Sbjct: 168 CSSAL 172 >gi|37594908|gb|AAQ94313.1| interferon resistance protein [Orf virus] Length = 183 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG A SK+ A A Sbjct: 109 NPVSAVNEFCMMTHRPL-EFCETRSGGEDHCPRFTCTITISGKVVAAADGASKKLARHTA 167 Query: 216 AAEVL 220 + L Sbjct: 168 CSSAL 172 >gi|37594906|gb|AAQ94312.1| interferon resistance protein [Orf virus] Length = 183 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG A SK+ A A Sbjct: 109 NPVSAVNEFCMMTHRPL-EFCETRSGGEDHCPRFTCTITISGKVVAAADGASKKLARHTA 167 Query: 216 AAEVL 220 + L Sbjct: 168 CSSAL 172 >gi|307776249|pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1 Length = 77 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 24/63 (38%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 K LQE+A P Y+ +FT VEI G+ +K+ AE A Sbjct: 10 KNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGR 69 Query: 218 EVL 220 L Sbjct: 70 TAL 72 >gi|121712950|ref|XP_001274086.1| RNase III domain protein [Aspergillus clavatus NRRL 1] gi|119402239|gb|EAW12660.1| RNase III domain protein [Aspergillus clavatus NRRL 1] Length = 259 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 22/141 (15%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH-------------------FDS 65 A+TH S + +RL F+G RI+ L S L + + Sbjct: 109 LAVTHKSFDQGRRGFNDRLAFIGKRIVQLQASLALVQNPGNASSSAASDSLGREPFAHPA 168 Query: 66 AKE-GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESL 122 + LS + L+S +++A++ +L +R S + S M + A + +L Sbjct: 169 LEGLNNLSGNTKSFLMSKSKLAELAQKYELDKVLRWSPRKPNNLASSGMELVLAHTMYAL 228 Query: 123 IAALYLDGGIEVAGTFVDKYW 143 + A+ L+ G VA + Sbjct: 229 VGAIALEKGGHVANKVAQERI 249 >gi|270005018|gb|EFA01466.1| hypothetical protein TcasGA2_TC007013 [Tribolium castaneum] Length = 4051 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE A+ P Y + G F V+ G A G SK+ A+ +A Sbjct: 6 PISLLQELMAARGISLPVY-IEEGFGTS----FKCTVKAGG-VTACGYGTSKKNAKHESA 59 Query: 217 AEVLKRE 223 L + Sbjct: 60 KNALVKL 66 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 20/146 (13%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL-IAALYLDGGIEVAGTFVDKY-- 142 AR + L +I SF +++A V + + E A + K Sbjct: 14 MAARGISLPVYI-----EEGFGTSFKCTVKAGGVTACGYGTSKKNAKHESAKNALVKLRR 68 Query: 143 ------WKQRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTFRSGPDHDPRFTVVVEI 195 K RA ++ R+ EL E+A +++G P Y S D F Sbjct: 69 EDKSPEIKPRA-ENNNLFRNFVGELNEYAASRYGAKYPSYDFLTVS---VDGEFFFKCSF 124 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLK 221 + + G +K+ A+Q +A ++L+ Sbjct: 125 ANEE-SIGEGMNKKDAKQDSARKMLE 149 >gi|194695624|gb|ACF81896.1| unknown [Zea mays] Length = 181 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 10/145 (6%) Query: 18 ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + YERLE++G +I L+++ L A L+ Sbjct: 38 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDLVMAERLLMKHLDAPGRWLA 97 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFMTSIQADVVESLIAALYL 128 + + + C + R+ L +I + S V ++L Y Sbjct: 98 EKHRRTLMNKYCGRYLRDKHLQHYIIYGETVQDRFEHNRRLRNPST-TSVQQALHGLAYC 156 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF 153 G + + + ++ Sbjct: 157 VYGKPDVRRLMFEVFDFEQVQPKAV 181 >gi|189236895|ref|XP_967977.2| PREDICTED: C3PO protein [Tribolium castaneum] Length = 3759 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + LQE A+ P Y + G F V+ G A G SK+ A+ +A Sbjct: 6 PISLLQELMAARGISLPVY-IEEGFGTS----FKCTVKAGG-VTACGYGTSKKNAKHESA 59 Query: 217 AEVLKRE 223 L + Sbjct: 60 KNALVKL 66 >gi|154297473|ref|XP_001549163.1| hypothetical protein BC1G_12333 [Botryotinia fuckeliana B05.10] gi|150858529|gb|EDN33721.1| hypothetical protein BC1G_12333 [Botryotinia fuckeliana B05.10] Length = 144 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 15/147 (10%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFN 61 + ++ ++ Y F LL +AL S + + RL +GD ++ L L++ Sbjct: 5 TYVKNKLDYDFKEDELLTEALVTSGVVFGANSTVERQGNRRLALIGDALIRL---ELVYT 61 Query: 62 HFDSAKEGELSVRF-NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + E S + + S + ++ L + + +K A VE Sbjct: 62 KYLDGATLETSQKCVSKNASNRNLGAIGQQNGLIDQMIFPVNQQKPG----EYTVATTVE 117 Query: 121 SLIAALYLDG--GIEVAGTFVDKYWKQ 145 +LI A++LD V G + + Sbjct: 118 ALIGAIWLDSEQDFGVIGRVIRALHIE 144 >gi|195434340|ref|XP_002065161.1| GK14818 [Drosophila willistoni] gi|194161246|gb|EDW76147.1| GK14818 [Drosophila willistoni] Length = 303 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 8/71 (11%) Query: 155 RDAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 DAK+ LQE+ PEY G D F + + A G SKR A Sbjct: 1 MDAKSAVSALQEFCAKTKNGPPEYNYID--GEDGG--FVCKASLLDME-AFGNGRSKRDA 55 Query: 212 EQVAAAEVLKR 222 + +AA +L++ Sbjct: 56 KHLAAVNILRK 66 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217 EL+++ P ++ +SG + P F ++ + S K+ A Q AA Sbjct: 96 ELRDYCVRHEMPLPVIEIVQQSGSPNAPEFVACCTVASITR---YGKSDKKKDARQRAAI 152 Query: 218 EVL 220 E+L Sbjct: 153 EML 155 >gi|297722713|ref|NP_001173720.1| Os03g0854400 [Oryza sativa Japonica Group] gi|255675058|dbj|BAH92448.1| Os03g0854400 [Oryza sativa Japonica Group] Length = 176 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 9/146 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +TL+ +I Y F LL +A+TH+S S + L LG + Sbjct: 34 LATLQNQIAYRFHAPDLLRRAMTHASYSRENGRA---LAVLGLAASQSAAALRALAADHD 90 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A +S R C A + + S +RV++ + + + +LI A Sbjct: 91 ASASAVSRRARDASGEAACVAAAARVGIPSIVRVAAGTKPTA----PPVVCGALRALIGA 146 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG 151 + +D A V +WK L + Sbjct: 147 VAVDANSTHAAEEV--FWKLHVLTAA 170 >gi|169625366|ref|XP_001806087.1| hypothetical protein SNOG_15956 [Phaeosphaeria nodorum SN15] gi|111055674|gb|EAT76794.1| hypothetical protein SNOG_15956 [Phaeosphaeria nodorum SN15] Length = 577 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 27/131 (20%) Query: 2 SALRYSTLEKRIGYAFANR-SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 S+ +E I Y F ++ L KALT + + +E ++ E I+ Sbjct: 3 SSASAQAVENIIAYKFQSKHDFLPKALT---AAGAVEEDWDAFE--------AGITRAYA 51 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F + + S E + VAR+ ++ IR + + S+ A V Sbjct: 52 SDF-----------KSKVSSNEQRAFVARQTGISRHIRFNERE----GAQSPSVLAKAVN 96 Query: 121 SLIAALYLDGG 131 ++I ++LD G Sbjct: 97 AIIGVVFLDCG 107 >gi|211956314|ref|YP_002302383.1| DsRNA binding PKR inhibitor [Deerpox virus W-1170-84] gi|115503109|gb|ABI99027.1| DsRNA binding PKR inhibitor [Deerpox virus W-1170-84] Length = 199 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ + L E+ Y SGP H P FT + ISG+ + +K+ A+ Sbjct: 124 DKNPCSVLNEYCQYTSRD--WYIDIISSGPIHKPLFTATLCISGVKFRSAIGSTKKEAKT 181 Query: 214 VAAAEVL 220 A + Sbjct: 182 NATRMAM 188 >gi|41057456|ref|NP_957929.1| ORF020 dsRNA-binding PKR inhibitor [Bovine papular stomatitis virus] gi|41018772|gb|AAR98377.1| ORF020 dsRNA-binding PKR inhibitor [Bovine papular stomatitis virus] Length = 195 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ ++ G DH P FT V +S + CSK+AA A Sbjct: 121 NPVSAVNEYCMRVHRPL-VFQECRTGGHDHCPLFTCTVVVSNKTVSTASGCSKKAARNAA 179 Query: 216 AAEVL 220 + L Sbjct: 180 CTDAL 184 >gi|296816815|ref|XP_002848744.1| 54S ribosomal protein L3 [Arthroderma otae CBS 113480] gi|238839197|gb|EEQ28859.1| 54S ribosomal protein L3 [Arthroderma otae CBS 113480] Length = 390 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 3/95 (3%) Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTP 173 A+ V +L+ A+YL GG A +F ++++K R L + +L + + P Sbjct: 246 ANFVRALMGAIYLHGGRRAAKSFFEEHFKSRQLPIADLFGFTEPTRDLSKLCKREGFEAP 305 Query: 174 EYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCS 207 KV +G P F V + +G S Sbjct: 306 VAKVISETGRLSRHPVFIVGIFSGKDKLGEGAGAS 340 >gi|207342841|gb|EDZ70480.1| YLR312W-Ap-like protein [Saccharomyces cerevisiae AWRI1631] gi|256270407|gb|EEU05604.1| Mrpl15p [Saccharomyces cerevisiae JAY291] gi|259148294|emb|CAY81541.1| Mrpl15p [Saccharomyces cerevisiae EC1118] gi|323336359|gb|EGA77627.1| Mrpl15p [Saccharomyces cerevisiae Vin13] gi|323347380|gb|EGA81652.1| Mrpl15p [Saccharomyces cerevisiae Lalvin QA23] Length = 253 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 13/133 (9%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILG-LLISTLLFNHFDSAK--EGELSVRFNS 77 L+ + LTH S +H + E+L LG + L L N + G+LS++F++ Sbjct: 85 ELILQCLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCENGQLSLQFSN 144 Query: 78 --------LVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAALY 127 L S T + +L FI ++ ++ + T+I A V+ + I A+ Sbjct: 145 LGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDPIKDGHINGETTIFASVLNAFIGAIL 204 Query: 128 LDGGIEVAGTFVD 140 G E A F+ Sbjct: 205 STNGSEKAAKFIQ 217 >gi|158289196|ref|XP_310950.4| AGAP000185-PA [Anopheles gambiae str. PEST] gi|157018938|gb|EAA06512.4| AGAP000185-PA [Anopheles gambiae str. PEST] Length = 631 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + YKV ++GP H P FT+ V + G G SK+ Sbjct: 12 ELKRNLVYKVESQTGPVHAPIFTISVVVDGQK-FVGTGPSKK 52 >gi|291390365|ref|XP_002711677.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog [Oryctolagus cuniculus] Length = 493 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K L EW + P Y+ R D F VV ++ + D SK+ AEQ A Sbjct: 370 PKMCLLEWCRREKLAQPTYETVQR---PLDRLFCSVVTVAEQKYQSTLWDKSKKLAEQAA 426 Query: 216 AAEVLKREGI 225 A L+ +G+ Sbjct: 427 AIVCLRSQGL 436 >gi|119501793|ref|XP_001267653.1| RNase3 domain protein [Neosartorya fischeri NRRL 181] gi|119415819|gb|EAW25756.1| RNase3 domain protein [Neosartorya fischeri NRRL 181] Length = 127 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 29/131 (22%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +E+ IG+ F NR L +AL + ++ ++L +GD++LGL+ S Sbjct: 11 QLQAVEELIGFRFTNRHWLLEAL--QAAGLINRDRNKKLAIIGDKVLGLIAS-------- 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 ++ + L +I + + A VE+++ Sbjct: 61 ----------------NSYLAERGFLMGLDRYIVNNP---AQGGLIPAKLMATTVEAILG 101 Query: 125 ALYLDGGIEVA 135 A+ D ++ Sbjct: 102 AVARDSDSDLT 112 >gi|50555369|ref|XP_505093.1| YALI0F06732p [Yarrowia lipolytica] gi|49650963|emb|CAG77900.1| YALI0F06732p [Yarrowia lipolytica] Length = 207 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 8/126 (6%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLI-STLLFNHFDSAKEGELSVRFNSLV 79 SLL + LTH S + E+L F+G + + + S L S L Sbjct: 88 SLLLQVLTHKSFAGGLPSHNEKLAFVGRKFFPVSVLSHNLSKEASSDPVKALESL----- 142 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S A + L + ++ + + I + V +L+ A+ L G + A F Sbjct: 143 -NFDLSGFAAKNGLEKLVYWNTKG-VTNATPSSKITSGSVYALVGAILLKKGEKAAHEFA 200 Query: 140 DKYWKQ 145 K +Q Sbjct: 201 QKVVQQ 206 >gi|323332393|gb|EGA73802.1| Mrpl15p [Saccharomyces cerevisiae AWRI796] gi|323353848|gb|EGA85703.1| Mrpl15p [Saccharomyces cerevisiae VL3] Length = 248 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 13/133 (9%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILG-LLISTLLFNHFDSAK--EGELSVRFNS 77 L+ + LTH S +H + E+L LG + L L N + G+LS++F++ Sbjct: 80 ELILQCLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCENGQLSLQFSN 139 Query: 78 --------LVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAALY 127 L S T + +L FI ++ ++ + T+I A V+ + I A+ Sbjct: 140 LGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDPIKDGHINGETTIFASVLNAFIGAIL 199 Query: 128 LDGGIEVAGTFVD 140 G E A F+ Sbjct: 200 STNGSEKAAKFIQ 212 >gi|297699046|ref|XP_002826610.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine synthase 2-like [Pongo abelii] Length = 493 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K L EW + P Y+ R D F+ +V ++ + D SK+ AEQ A Sbjct: 370 PKMCLLEWCRREKLAQPVYETVQR---PVDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 426 Query: 216 AAEVLKREGI 225 A L+ +G+ Sbjct: 427 AIVCLRSQGL 436 >gi|260940168|ref|XP_002614384.1| hypothetical protein CLUG_05870 [Clavispora lusitaniae ATCC 42720] gi|238852278|gb|EEQ41742.1| hypothetical protein CLUG_05870 [Clavispora lusitaniae ATCC 42720] Length = 409 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 50/231 (21%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA---- 94 + L LG +L +S L + + ++ + E S + + + Sbjct: 144 NNFGLSTLGKTLLSYYVSEHLLLRYPRLPMAVHNAAVDAYMGTEALSLIGKSWGIEVDSS 203 Query: 95 -----------SFIRVSS----------DLRKDVCSFMTS-------------------I 114 F++ ++ + ++ Sbjct: 204 SKLQKHLAQEPEFLQYGKLRFLAENAKEEVEESGIHELSKEELATLDPSTNSYISKEQDA 263 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK--TELQEWAHAKFGVT 172 A V++++ LY G +V F+ + R + + + +K EL Sbjct: 264 YASAVKAIVGGLYTHAGEDVTKEFIRAHILSRKVPLTEMFQFSKPTRELARICEKLELEH 323 Query: 173 P-EYKVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P E ++ +G H + G +G+ S A+ A L Sbjct: 324 PLEVRLIAETGRLSAHA-IYVAGAFSGGDKLGEGVGSSLNEAKTRAVVNAL 373 >gi|159163523|pdb|1X48|A Chain A, Solution Structure Of The Second Dsrm Domain In Interferon- Induced, Double-Stranded Rna-Activated Protein Kinase Length = 88 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 17/37 (45%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF +I G +K+ A+Q+AA E ++ Sbjct: 36 QRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKL 72 >gi|307176984|gb|EFN66290.1| Dosage compensation regulator [Camponotus floridanus] Length = 1243 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K+ +W AK G P++ V +GP H RF + + G G +K+ A+ Sbjct: 3 DIKSFFHQWC-AKNGKEPQFDV-RPTGPKHRQRFLCELRVPGFDYVGAGNSTNKKDAQGN 60 Query: 215 AAAE 218 AA + Sbjct: 61 AAKD 64 Score = 36.6 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QG--MDCSKRA 210 +AK++L ++ + +YK T GPDH F + I G +K+ Sbjct: 164 NAKSKLHQFMQTN-KINADYKYTPV-GPDHTRSFMAEMSIYVKQLGRSITGRETGSNKQT 221 Query: 211 AEQVAAAEVLKRE 223 A + A ++++ Sbjct: 222 ASKSCALSIVRQL 234 >gi|115495449|ref|NP_001068887.1| tRNA-dihydrouridine synthase 2-like [Bos taurus] gi|111308646|gb|AAI20343.1| Dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) [Bos taurus] gi|296477934|gb|DAA20049.1| dihydrouridine synthase 2-like, SMM1 homolog [Bos taurus] Length = 493 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K L EW + P Y+ R D F VV ++ + D SK+ AEQ A Sbjct: 370 PKMCLLEWCRREKLAQPVYETVQR---PLDRLFCSVVTVAEQKYQSTLWDKSKKLAEQAA 426 Query: 216 AAEVLKREGI 225 A L+ +G+ Sbjct: 427 AIVCLRSQGL 436 >gi|289629402|gb|AAB70372.2| Hypothetical protein F39E9.7 [Caenorhabditis elegans] Length = 125 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + +L E+A + P ++ F + +G SK A++ A Sbjct: 11 NPVAQLNEYAQKFYKKYPTFEFVKEQAVGKHRVFIIQATFEDKTL-EGRGPSKMIAKRAA 69 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 70 AEAILESIG 78 >gi|255574401|ref|XP_002528114.1| double-stranded RNA binding protein, putative [Ricinus communis] gi|223532503|gb|EEF34293.1| double-stranded RNA binding protein, putative [Ricinus communis] Length = 786 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Query: 161 LQEWAHAKFGVTPEYK-VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 LQE + E++ V S D +F+V V +G GM +++ A Q AA Sbjct: 611 LQEIG-RRCNSKVEFRSVVSTSK---DLQFSVEVLFTGEKIGIGMGKTRKDAHQQAAENA 666 Query: 220 LK 221 L+ Sbjct: 667 LR 668 >gi|311265930|ref|XP_003130894.1| PREDICTED: double-stranded RNA-specific editase B2-like [Sus scrofa] Length = 899 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K L + + +Y+ ++GP H P F V V+++GL +G K+ + A Sbjct: 392 PKNALVQL--HELRPGLQYRTVSQTGPVHAPVFAVAVDVNGLT-FEGTGPIKKKLKMRRA 448 Query: 217 AEVLK 221 L+ Sbjct: 449 ELALR 453 >gi|301608716|ref|XP_002933927.1| PREDICTED: eukaryotic translation initiation factor 2-alpha kinase 3 [Xenopus (Silurana) tropicalis] Length = 384 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKREG 224 RFTV + I +G S++AA++ AA L+ G Sbjct: 3 KRFTVHLYIENEIFGEGQGRSRKAADKEAARTGLAALQNRG 43 >gi|238575785|ref|XP_002387790.1| hypothetical protein MPER_13270 [Moniliophthora perniciosa FA553] gi|215448580|gb|EEB88720.1| hypothetical protein MPER_13270 [Moniliophthora perniciosa FA553] Length = 361 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%) Query: 175 YKVT---FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV-LKR 222 Y VT + GP HDP +TVV E++G +G S + A AA + L + Sbjct: 304 YTVTYAASKEGPPHDPVWTVVYELNGQTQGKGTGRSMQIATHAAATDAWLNK 355 >gi|148236950|ref|NP_001079771.1| mitochondrial ribosomal protein L44 [Xenopus laevis] gi|32450587|gb|AAH54195.1| MGC64346 protein [Xenopus laevis] Length = 322 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 72/221 (32%), Gaps = 31/221 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ-----------------ESYERLEFLGDRI 50 +R+ +F+ LL+ A + + + + E+L +G Sbjct: 64 AFSQRLNESFS-MQLLKTAFVNKTYVMQEEQQRQELGLDKETAMLNLQDNEQLAGVGSEF 122 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 + L F + + + L S E VA+ L + S + Sbjct: 123 TASYVQKTLEKAFPNLPPDGIKSLVDHLTSQEVVCHVAQNLAVEDLTLSSECPLDPLTIH 182 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTEL-QEWA 165 T ++ AL G + AG F+ + + + F D + L QE + Sbjct: 183 RT------FFAITGALLQSSGTQRAGLFIRDFLITQLIGKDLFDIWLIADPMSLLVQELS 236 Query: 166 HAKFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMD 205 H + PE ++T G P + V + + A+G Sbjct: 237 H-RNLPLPEPRMTRECGAATVLPVYFVGLYCNKELIAEGPG 276 >gi|149699255|ref|XP_001498775.1| PREDICTED: similar to tRNA-dihydrouridine synthase 2-like (hDUS2) (Up-regulated in lung cancer) (URLC8) isoform 1 [Equus caballus] Length = 493 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K L EW + P Y+ R D F VV ++ + D SK+ AEQ A Sbjct: 370 PKMCLLEWCRREKLAQPVYETVQR---PLDRLFCSVVTVAEQKYQSTLWDKSKKLAEQAA 426 Query: 216 AAEVLKREGI 225 A L+ +G+ Sbjct: 427 AIVCLRSQGL 436 >gi|190405368|gb|EDV08635.1| 60S ribosomal protein L15, mitochondrial precursor [Saccharomyces cerevisiae RM11-1a] Length = 234 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 13/133 (9%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILG-LLISTLLFNHFDSAK--EGELSVRFNS 77 L+ + LTH S +H + E+L LG + L L N + G+LS++F++ Sbjct: 66 ELILQCLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCENGQLSLQFSN 125 Query: 78 --------LVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAALY 127 L S T + +L FI ++ ++ + T+I A V+ + I A+ Sbjct: 126 LGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDSIKDGHINGETTIFASVLNAFIGAIL 185 Query: 128 LDGGIEVAGTFVD 140 G E A F+ Sbjct: 186 STNGSEKAAKFIQ 198 >gi|37594904|gb|AAQ94311.1| interferon resistance protein [Orf virus] Length = 183 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG A SKR A A Sbjct: 109 NPVSAVNEFCMMTHRPL-EFCETRSGGEDHCPRFTCTITISGKVVAAADGASKRLARHTA 167 Query: 216 AAEVL 220 + L Sbjct: 168 CSSAL 172 >gi|149636339|ref|XP_001515991.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Ornithorhynchus anatinus] Length = 1325 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K VTP Y++ G + +F V + G GM S K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKVTPTYEIRAV-GNKNRQKFMCEVRVEGFNY-TGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 43.9 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 7/66 (10%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV--VEI---SGLAPAQGMDCSKRA 210 +AK L ++ + V EYK T GPDH+ F V + A+ +K+ Sbjct: 185 NAKARLNQFFQKE-KVQGEYKYTQV-GPDHNRSFIAEMTVYVKQLGRRIFAREHGSNKKL 242 Query: 211 AEQVAA 216 A Q A Sbjct: 243 AAQSCA 248 >gi|7504924|pir||T23094 hypothetical protein H15N14.1a - Caenorhabditis elegans Length = 959 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%) Query: 166 HAKFGVTPEYK----VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K Y+ V +G F I G+ SK+ A+ AA + LK Sbjct: 534 QTKQKCKIAYEFKDNVPPVAGQA-TTTFYCECVIDETDRYIGVGRSKKLAKSEAAMQALK 592 Query: 222 RE 223 + Sbjct: 593 KL 594 >gi|47220991|emb|CAF98220.1| unnamed protein product [Tetraodon nigroviridis] Length = 363 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + +YK+ ++GP H P FT+ VE+ G + SKR A+ Sbjct: 312 QLKPGLQYKLVSQTGPVHVPVFTMSVEVDGTV-FEASGPSKRTAK 355 >gi|39951763|ref|XP_363598.1| hypothetical protein MGG_01524 [Magnaporthe oryzae 70-15] gi|145020632|gb|EDK04761.1| hypothetical protein MGG_01524 [Magnaporthe oryzae 70-15] Length = 413 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 5/95 (5%) Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVT 172 ++ V +L A+Y G E A F++ + R L + TEL + Sbjct: 268 HSNFVRALTGAVYAHCGREAAKLFINAHILSRHLDIATLFSFKRPTTELARLCAREDFAE 327 Query: 173 PEYKVTFRSGPDHD--PRFTVVVEISGLAPAQGMD 205 P ++ +G H P F V + +G Sbjct: 328 PTARILSETGR-HSRTPVFVVGIFSGNDKLGEGSG 361 Score = 35.4 bits (81), Expect = 5.9, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 25/69 (36%) Query: 27 LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86 L S + + L LG +++ ++ L + L +S + S+ Sbjct: 108 LIDRSADKDIRFNNYSLSRLGSQLIEYHVNEWLMCRYPRLPYSVLLAARDSYAGELSLSE 167 Query: 87 VARELDLAS 95 +++ + S Sbjct: 168 ISKSWGVES 176 >gi|156054704|ref|XP_001593278.1| predicted protein [Sclerotinia sclerotiorum 1980] gi|154703980|gb|EDO03719.1| predicted protein [Sclerotinia sclerotiorum 1980 UF-70] Length = 329 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 22/165 (13%) Query: 9 LEKRIGYAFANRSLLEKALTHS-----SISHSYQ---ESYERLEFLGDRILGLLIST-LL 59 L+ + Y+F N +LE+AL S+ + + + + LG+ ++ L++ Sbjct: 158 LQSYLSYSFLNPDILEEALETPKNGVTSVGTTRRICMDGNAGMAKLGEMVMRLVLREQFY 217 Query: 60 FNHFDSAKEGELSVR---FNSLVSAETCSQVARELDLASFIRVS-----SDLRKDVCSFM 111 A+ +++ R +SL + T + R +I VS +++D Sbjct: 218 LFSIPHAQAAQITNRVLSRHSLNAYPTIASCIRP---QPYIPVSFRNIIELVKEDTREDS 274 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156 T + V+++I A+YLDGGIE A ++ Q +K RD Sbjct: 275 TRAISRAVKAVIGAVYLDGGIENAKKVMENL--QMGIKLPPGSRD 317 >gi|32563643|ref|NP_492153.2| Adenosine Deaminase that acts on RNA family member (adr-1) [Caenorhabditis elegans] gi|25004982|emb|CAB09530.2| C. elegans protein H15N14.1c, confirmed by transcript evidence [Caenorhabditis elegans] Length = 964 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%) Query: 166 HAKFGVTPEYK----VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K Y+ V +G F I G+ SK+ A+ AA + LK Sbjct: 539 QTKQKCKIAYEFKDNVPPVAGQA-TTTFYCECVIDETDRYIGVGRSKKLAKSEAAMQALK 597 Query: 222 RE 223 + Sbjct: 598 KL 599 >gi|24620504|gb|AAN61050.1| ADR-1D [Caenorhabditis elegans] Length = 912 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%) Query: 166 HAKFGVTPEYK----VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K Y+ V +G F I G+ SK+ A+ AA + LK Sbjct: 468 QTKQKCKIAYEFKDNVPPVAGQA-TTTFYCECVIDETDRYIGVGRSKKLAKSEAAMQALK 526 Query: 222 RE 223 + Sbjct: 527 KL 528 >gi|33415071|gb|AAQ18043.1| double-stranded RNA-binding protein [Orf virus] Length = 183 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG + SK+ A A Sbjct: 109 NPVSAVNEFCMMTRRPL-EFCETRSGGEDHCPRFTCTITISGKVVSVADGASKKLARHTA 167 Query: 216 AAEVL 220 + L Sbjct: 168 CSSAL 172 >gi|328714433|ref|XP_003245358.1| PREDICTED: hypothetical protein LOC100570158 [Acyrthosiphon pisum] Length = 540 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 LQE+ A+ P+Y+ + + ++V+ I G G+ SK+ A+ AA + Sbjct: 207 LQEYCQARGLDLPKYEYHQDNDIKNKRYMYSVICSI-GKCKCTGVGISKQIAKNHAARLM 265 Query: 220 LKR 222 + Sbjct: 266 YIQ 268 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 9/106 (8%) Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE--------LQEWAHAKFGVTPEYKVTF 179 +D G+ ++ AL ++ KT+ LQE A+ P+Y+ Sbjct: 290 IDFGLGLSKNEAKNNTVNIALDQIYHGKN-KTKMSANYIGTLQEKCAARGWELPKYEYHQ 348 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + + F V+ +G + G+ SK+ A+ AA V + + Sbjct: 349 ENDNEIHKLFYSVICSAGPYKSTGVGNSKQLAKNQAAQIVCDQINL 394 >gi|115433847|ref|XP_001217060.1| predicted protein [Aspergillus terreus NIH2624] gi|114189912|gb|EAU31612.1| predicted protein [Aspergillus terreus NIH2624] Length = 151 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 8/119 (6%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 Y F NR L+ +AL + + L GD IL ++ G + R Sbjct: 24 YRFINRDLIREAL--QGCAPYNPSGNKSLALAGDAILRQVLVDYGRER--QTTPGRIPFR 79 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 ++ T +A E+ + I + + ++ A +E++I A+Y D + Sbjct: 80 NPQIICKLTAPFMADEIQ--NTITQNPG--QWGVVAGKNVMATTMEAIIGAVYYDSNKD 134 >gi|145473673|ref|XP_001462500.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|74830346|emb|CAI39052.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia] gi|124430340|emb|CAK95127.1| unnamed protein product [Paramecium tetraurelia] Length = 721 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 44/151 (29%), Gaps = 35/151 (23%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 E+ +G S L +A+T E YERLEFLGD IL LI + + Sbjct: 521 SLDKFEQFLGCK---LSRLNEAMT--------VEDYERLEFLGDAILEFLIVANVHKECE 569 Query: 65 S---------------------AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 G L SL+ +A + L Sbjct: 570 KYYYSQDQQQMCREGKLESKLLLCPGMLHTAKISLLDNGFMGTMALYHGYHQYAI---GL 626 Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 ++ + + + + + YL Sbjct: 627 CQETQNEIEKVLEALRQEEFNEFYLINQYST 657 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 12/120 (10%) Query: 33 SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD 92 S + + +Y+ LE LGD ++ L S +LF E LS L++ + S V L Sbjct: 351 SSNLERNYQNLEMLGDSVIKYLTSAMLFEDKGLNNESLLSSLRIKLITNKHLSDVYSILQ 410 Query: 93 L---ASFIRVSSDLRKDVCSFMT--------SIQADVVESLIAALYL-DGGIEVAGTFVD 140 + S I + QAD+ E++ A Y+ D F Sbjct: 411 IRTMNSKIHYKKVRNHMTTTINDVDDFKLSRKQQADIYEAICGACYIRDYEFSDVIKFFK 470 >gi|294659131|ref|XP_461474.2| DEHA2F26092p [Debaryomyces hansenii CBS767] gi|202953643|emb|CAG89895.2| DEHA2F26092p [Debaryomyces hansenii] Length = 364 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 34/247 (13%), Positives = 68/247 (27%), Gaps = 52/247 (21%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +AL + L LG +L +S L + +V +S + + Sbjct: 84 LSQALNLKKY--DGLANNFGLNTLGKTLLSYYVSEHLLVKYPRLPMPIHNVAVDSYMGSN 141 Query: 83 TCSQVARELD--------LASFI-----------------------------RVSSDLRK 105 + + L ++ +S + Sbjct: 142 ALFDIGKIWGIQVDTTSKLEKYLSQEPEFMQYGKLRFISEEFKNEVKESGVFELSEEEIA 201 Query: 106 DVCSFMTSIQADVVES-------LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158 + + + E+ +I LY G +V F+ + R L + + +K Sbjct: 202 SINKENNTYLSKETEAYASAVRSIIGGLYTHAGEDVTKQFIHDHILSRKLPLDQMFQFSK 261 Query: 159 --TELQEWAHAKFGVTP-EYKVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 EL P E ++ +G H + +G+ S + A+ Sbjct: 262 PTRELVRLCEKLNFTEPVEIRLIAETGRLSSHA-IYVAGAFSGVEKLGEGVGSSLQEAKT 320 Query: 214 VAAAEVL 220 A L Sbjct: 321 RAVVNAL 327 >gi|32563645|ref|NP_492154.2| Adenosine Deaminase that acts on RNA family member (adr-1) [Caenorhabditis elegans] gi|27753105|emb|CAD60417.1| C. elegans protein H15N14.1d, confirmed by transcript evidence [Caenorhabditis elegans] Length = 912 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%) Query: 166 HAKFGVTPEYK----VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K Y+ V +G F I G+ SK+ A+ AA + LK Sbjct: 468 QTKQKCKIAYEFKDNVPPVAGQA-TTTFYCECVIDETDRYIGVGRSKKLAKSEAAMQALK 526 Query: 222 RE 223 + Sbjct: 527 KL 528 >gi|307176614|gb|EFN66082.1| 39S ribosomal protein L44, mitochondrial [Camponotus floridanus] Length = 213 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 11/182 (6%) Query: 47 GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 G+++ ++ L A E + +N L+S E ++VA + I Sbjct: 18 GEQLTSEIVQNYLTQVLPLAPESVIISLYNYLLSEEILAKVACHIGAKDIILT---EEHP 74 Query: 107 VCSFMTSIQADVVESLIAAL--YLDGGIEV--AGTFVDKYWKQRALKSGKFRRDAKTELQ 162 V +D +L+AAL +D F+ ++ L + L Sbjct: 75 VT---EKTLSDTFFALVAALAESVDANHAANFVKDFLIVLLAEKDLTEIWNPAEPVEILN 131 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + + E ++ ++G + + + + G + + A+ VAA VL Sbjct: 132 DVLQKQNRALAEPRLIGKAGQNTLLVVYHIAMYSDKKFLGSGFGQTIQEAKNVAAINVLS 191 Query: 222 RE 223 R Sbjct: 192 RM 193 >gi|332030651|gb|EGI70339.1| Dosage compensation regulator [Acromyrmex echinatior] Length = 1202 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K+ +W AK G P++ V +GP H RF + I G G +K+ A+ Sbjct: 3 DIKSFFHQWC-AKNGKEPQFDV-RPTGPKHRQRFLCELRIPGFDYVGAGNSTNKKDAQGN 60 Query: 215 AAAE 218 AA + Sbjct: 61 AARD 64 >gi|151940843|gb|EDN59225.1| YmL15 [Saccharomyces cerevisiae YJM789] Length = 234 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 13/133 (9%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILG-LLISTLLFNHFDSAK--EGELSVRFNS 77 L+ + LTH S +H + E+L LG + L L N + G+LS++F++ Sbjct: 66 ELILQCLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCENGQLSLQFSN 125 Query: 78 --------LVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAALY 127 L S T + +L FI ++ ++ + T+I A V+ + I A+ Sbjct: 126 LGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDPIKDGHINGETTIFASVLNAFIGAIL 185 Query: 128 LDGGIEVAGTFVD 140 G E A F+ Sbjct: 186 STNGSEKAAKFIQ 198 >gi|29126353|gb|AAO66545.1| hypothetical protein Os03g63740 [Oryza sativa Japonica Group] gi|108712167|gb|ABF99962.1| expressed protein [Oryza sativa Japonica Group] Length = 213 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 9/146 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +TL+ +I Y F LL +A+TH+S S + L LG + Sbjct: 34 LATLQNQIAYRFHAPDLLRRAMTHASYSRENGRA---LAVLGLAASQSAAALRALAADHD 90 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A +S R C A + + S +RV++ + + + +LI A Sbjct: 91 ASASAVSRRARDASGEAACVAAAARVGIPSIVRVAAGTKPTA----PPVVCGALRALIGA 146 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG 151 + +D A V +WK L + Sbjct: 147 VAVDANSTHAAEEV--FWKLHVLTAA 170 >gi|32563647|ref|NP_871801.1| Adenosine Deaminase that acts on RNA family member (adr-1) [Caenorhabditis elegans] gi|27753106|emb|CAD60418.1| C. elegans protein H15N14.1e, confirmed by transcript evidence [Caenorhabditis elegans] Length = 893 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%) Query: 166 HAKFGVTPEYK----VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K Y+ V +G F I G+ SK+ A+ AA + LK Sbjct: 468 QTKQKCKIAYEFKDNVPPVAGQA-TTTFYCECVIDETDRYIGVGRSKKLAKSEAAMQALK 526 Query: 222 RE 223 + Sbjct: 527 KL 528 >gi|24620514|gb|AAN61051.1| ADR-1E [Caenorhabditis elegans] Length = 893 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%) Query: 166 HAKFGVTPEYK----VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K Y+ V +G F I G+ SK+ A+ AA + LK Sbjct: 468 QTKQKCKIAYEFKDNVPPVAGQA-TTTFYCECVIDETDRYIGVGRSKKLAKSEAAMQALK 526 Query: 222 RE 223 + Sbjct: 527 KL 528 >gi|327409791|ref|YP_004347211.1| putative ribonuclease III [Lausannevirus] gi|326784965|gb|AEA07099.1| putative ribonuclease III [Lausannevirus] Length = 319 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 1/91 (1%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA-KEGELSVRFN 76 N + A TH ++ +YE E LGD ++ I + + L+ + Sbjct: 29 NNLAKFRVAFTHKTVQSGDDNNYELYELLGDSLVNAAILRYISSIRPDITDVETLTRIKH 88 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDV 107 + S S ++ + + + K + Sbjct: 89 YIQSRAFLSLLSLRNGYFEHVVLGEEFAKSI 119 >gi|327300969|ref|XP_003235177.1| hypothetical protein TERG_04230 [Trichophyton rubrum CBS 118892] gi|326462529|gb|EGD87982.1| hypothetical protein TERG_04230 [Trichophyton rubrum CBS 118892] Length = 267 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 22/145 (15%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH-----------------FDSAK 67 +A+TH S + +RL + G +I+ L S L + +DSA Sbjct: 115 QAVTHKSFDQGRRGFNDRLAYFGKQIILLQASLALVQNPTAYAQPSKPDPFERLPYDSAA 174 Query: 68 EGEL----SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-SFMTSIQADVVESL 122 L + L + S +AR + +R ++ D+ S + +I + ++ Sbjct: 175 LKGLEVLSQNTRSQLTRKKQMSALARHYGINEVMRWVPRMQHDLTESGVDTIYTHAMYAV 234 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA 147 I A+ L+ G +VA V + Sbjct: 235 IGAIALEHGSKVANEIVRDRILKPL 259 >gi|24620493|gb|AAN61049.1| ADR-1C [Caenorhabditis elegans] Length = 964 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%) Query: 166 HAKFGVTPEYK----VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K Y+ V +G F I G+ SK+ A+ AA + LK Sbjct: 539 QTKQKCKIAYEFKDNVPPVAGQA-TTTFYCECVIDETDRYIGVGRSKKLAKSEAAMQALK 597 Query: 222 RE 223 + Sbjct: 598 KL 599 >gi|168010927|ref|XP_001758155.1| predicted protein [Physcomitrella patens subsp. patens] gi|162690611|gb|EDQ76977.1| predicted protein [Physcomitrella patens subsp. patens] Length = 893 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + L+E + + ++K +G F VE+ G +G S Sbjct: 822 NEEPLPYNHVGALKELC-TREAINIQFKALPSTGVGQRQIFRCQVEVGGRTLGRGSGPSW 880 Query: 209 RAAEQVAAAEV 219 A+Q AA E Sbjct: 881 DDAKQQAAKEA 891 >gi|147900893|ref|NP_001087171.1| spermatid perinuclear RNA-binding protein [Xenopus laevis] gi|82182202|sp|Q6DCD0|STRBP_XENLA RecName: Full=Spermatid perinuclear RNA-binding protein gi|50415523|gb|AAH78118.1| Strbp-prov protein [Xenopus laevis] Length = 686 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 7/74 (9%) Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + K + + + L + +YK+ +SGP H P FT+ V++ G Sbjct: 374 LSKILDSKPIDPNQ----PMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGT 427 Query: 199 APAQGMDCSKRAAE 212 + SK+ A+ Sbjct: 428 TH-EASGPSKKTAK 440 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ SG HD RF + VE+ +G + Sbjct: 511 KNPVMELNEKRRGL--KYELISESGGSHDKRFIMEVEVDAQK-FKGAGPN 557 >gi|73957464|ref|XP_546866.2| PREDICTED: similar to dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Canis familiaris] Length = 560 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 16/142 (11%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG-IEVAGTFVDKYWK 144 ++ L +F + +++ + + A E+ + G I++A F + + Sbjct: 376 EICEAFGLGAF---YEETTRELNARRAELLARTPEAAREPVEDTSGVIKMAVKFDRRAYS 432 Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQG 203 + K L EW + P Y R D F VV ++ + Sbjct: 433 PQIT--------PKMCLLEWCRKEKLAQPVYDTVQR---PLDRLFCSVVTVAEQKYQSTL 481 Query: 204 MDCSKRAAEQVAAAEVLKREGI 225 D SK+ AEQ AA L+ G+ Sbjct: 482 WDKSKKLAEQAAAIVCLRSRGL 503 >gi|170587044|ref|XP_001898289.1| Probable ATP-dependent RNA helicase A [Brugia malayi] gi|158594684|gb|EDP33268.1| Probable ATP-dependent RNA helicase A, putative [Brugia malayi] Length = 1431 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 52/176 (29%), Gaps = 30/176 (17%) Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI----------- 114 EL S++ A R+ + I ++ + S+ Sbjct: 105 LDPTELPKLTASMLEATNLDSFGRD-SVEDVILLNKAEENSYTTTNVSMNMQFIPSSRIK 163 Query: 115 --QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 +E + L +++ + + G ++K L E+ Sbjct: 164 TEHQRYIEQKAEEIALSESVDL----------RTHIHGGWTADNSKMHLNEFVQKIKQPP 213 Query: 173 PEYKVTFRSGPDHDPRFTVVV-----EISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y + G D+ F V ++ A+ +K+ AE A ++++ Sbjct: 214 LRYDIRSI-GTDNSRTFVAEVSLFVPKVRCTFSARAEGSTKKTAEATCALSLMRQL 268 >gi|289740327|gb|ADD18911.1| mitochondrial ribosomal protein L44 [Glossina morsitans morsitans] Length = 325 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 78/233 (33%), Gaps = 31/233 (13%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ---------------ESYERLEFLGDRILGLLI 55 KR+ F LL+ ALT S + + L G R+ I Sbjct: 72 KRLNEDFQ-VPLLQTALTQESYVAKEKLKQEELGVENADIQLKHNAELAEHGQRLAKAYI 130 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + + + L++ +T + VA L + + + +D + S+ Sbjct: 131 EAFVAHSLPKMPAEGHKAVTSYLLTVDTLAHVALHLGMKE-LLMDADYPPSSDAMSRSLL 189 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGV 171 ++I L G+E A +FV + Q+ L + L++ K Sbjct: 190 -----AVIGCLQQSSGLERAFSFVRDFICTQLNQKDLMEIWHIDKPEEVLKQVCRQKGIS 244 Query: 172 TPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 PE ++ G + + V + + +G A Q+AA + L+ Sbjct: 245 EPEPRLIADCGR--NTILAAYFVGLYSNKKLLGKGFGEDINTATQLAALDALQ 295 >gi|255949164|ref|XP_002565349.1| Pc22g14250 [Penicillium chrysogenum Wisconsin 54-1255] gi|211592366|emb|CAP98713.1| Pc22g14250 [Penicillium chrysogenum Wisconsin 54-1255] Length = 255 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 24/147 (16%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---------------------HF 63 A+TH S + +RL FLG RI+ L S L Sbjct: 103 LAVTHKSFDQGRRGFNDRLAFLGKRIVQLQASLALAQDAPYAGASPVENKDEFGRVPFTH 162 Query: 64 DSAKE-GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVE 120 + LS L +++A + +L +R S D S + + A + Sbjct: 163 PALDGLNNLSGETKKILTERSKLAELANKYELQKVLRWSPRKPNDLRASGVELVLAHTMY 222 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA 147 +++ A+ L+ G VA + + Sbjct: 223 AIVGAVSLEKGGVVATKVARERILEPL 249 >gi|195401473|ref|XP_002059337.1| GJ18398 [Drosophila virilis] gi|194142343|gb|EDW58749.1| GJ18398 [Drosophila virilis] Length = 1362 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213 D K+ L + AK P+++V +GP H RF V + A G +K+ AE+ Sbjct: 1 MDIKSFLFSYC-AKNQTEPKFEV-RPTGPKHRQRFLCEVRVDQCPYVAVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A+ + Sbjct: 59 NASRD 63 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 20/112 (17%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGK------------FRRDAKTELQEWAHAKFGVTPEYK 176 DGG + + +D +Q+ + + +AK L + + +YK Sbjct: 131 DGGRDR-FSIIDHVQEQKDMNEAESIDVNAAIHGNWTIENAKDRLNIYKQSNNIRD-DYK 188 Query: 177 VTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T GPDH F + I A+ +K++A + A ++++ Sbjct: 189 YTPV-GPDHARSFMAELSIFVPALKRKVTARETGSNKKSASKSCALSLVRQL 239 >gi|331241462|ref|XP_003333379.1| hypothetical protein PGTG_15163 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309312369|gb|EFP88960.1| hypothetical protein PGTG_15163 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 373 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 73/235 (31%), Gaps = 66/235 (28%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK----EGELSVRF---------N 76 ++ + E L LG+ ILG+L S L + + Sbjct: 75 TNFLDDEKLHNEELATLGNSILGMLGSEWLDRRYPYLPTKSAPYSYHLIRYFSAFQAALT 134 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDG----- 130 V TC+ VAR ++S + L I++ V + ++ LDG Sbjct: 135 MYVGPRTCADVARLWGVSS----GTGLSNLTIEGKPKIESAGVYA--GGIFDLDGKPKNK 188 Query: 131 ----------GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK---- 176 G EVA + ++ ++ F +D K + K GV Y+ Sbjct: 189 GQKHKQDGSKGEEVAQPGLLRW-----RRADGFEKD-KEIGMRASAFKQGVL--YEDAMA 240 Query: 177 ---------VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V G +F + SK+ AE A + L+R Sbjct: 241 SVSRAFVGMVYSLHGMKAARQF----------LGEAFGTSKKMAEYRAHEDALRR 285 >gi|82469836|gb|ABB77176.1| R2D2 [Drosophila melanogaster] Length = 311 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + LQE+ P Y P D + VE+ + A G SKR A+ Sbjct: 3 NKSAVSALQEFCARTQINLPTYSFI----PGEDGGYVCKVELLEIE-AIGNGRSKRDAKH 57 Query: 214 VAAAEVLKR 222 +AA+ +L++ Sbjct: 58 LAASNILRK 66 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207 + RD EL+++ + P +V +SG P F ++ + S Sbjct: 88 ELTNLNRDMVKELRDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 144 Query: 208 -KRAAEQVAAAEVL 220 K+ A Q AA E+L Sbjct: 145 KKKDARQRAAIEML 158 >gi|116006497|ref|NP_013416.2| Mrpl15p [Saccharomyces cerevisiae S288c] gi|3123277|sp|P36523|RM15_YEAST RecName: Full=54S ribosomal protein L15, mitochondrial; AltName: Full=YmL15; Flags: Precursor gi|2258171|gb|AAB64533.1| Mrpl15p: mitochondrial ribosomal protein YmL15 [Saccharomyces cerevisiae] gi|285813726|tpg|DAA09622.1| TPA: Mrpl15p [Saccharomyces cerevisiae S288c] gi|323303777|gb|EGA57561.1| Mrpl15p [Saccharomyces cerevisiae FostersB] gi|323307957|gb|EGA61214.1| Mrpl15p [Saccharomyces cerevisiae FostersO] Length = 253 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 13/133 (9%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILG-LLISTLLFNHFDSAK--EGELSVRFNS 77 L+ + LTH S +H + E+L LG + L L N + G+LS++F++ Sbjct: 85 ELILQCLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCENGQLSLQFSN 144 Query: 78 --------LVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAALY 127 L S T + +L FI ++ ++ + T+I A V+ + I A+ Sbjct: 145 LGTKFAKELTSKNTACTFVKLHNLDPFIFWKMRDPIKDGHINGETTIFASVLNAFIGAIL 204 Query: 128 LDGGIEVAGTFVD 140 G E A F+ Sbjct: 205 STNGSEKAAKFIQ 217 >gi|241999660|ref|XP_002434473.1| double-stranded RNA-specific editase B2, putative [Ixodes scapularis] gi|215497803|gb|EEC07297.1| double-stranded RNA-specific editase B2, putative [Ixodes scapularis] Length = 683 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 3/52 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 K L + + +Y V + GP H P F V V++ G G SK Sbjct: 63 PKNALMQL--NELKPGLKYSVESQEGPAHQPSFVVSVDVDGQT-FTGRGQSK 111 >gi|90077408|dbj|BAE88384.1| unnamed protein product [Macaca fascicularis] Length = 437 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I A+G +K+ Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFARGHGSNKKL 237 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 238 AAQSCALSLVRQL 250 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V++ G GM S K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 >gi|115400141|ref|XP_001215659.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114191325|gb|EAU33025.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 264 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 21/140 (15%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN------------------HFDSA 66 A+TH S + +RL FLG RI+ L S L + Sbjct: 115 LAVTHKSFDQGRRGFNDRLAFLGKRIVQLQASLALVQSPGGSAASSVDAFGRRPFEHPAL 174 Query: 67 KE-GELS-VRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQADVVESLI 123 LS L+S +++A++ +L +R S + S + A + +++ Sbjct: 175 DGLPNLSPSTKELLLSKAKLAELAQKYELQKVLRWSPRKPQNLASSGFELVLAHTMYAVV 234 Query: 124 AALYLDGGIEVAGTFVDKYW 143 A+ L+ G VA + Sbjct: 235 GAVSLEKGGHVANEVARERI 254 >gi|296231397|ref|XP_002761126.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 1 [Callithrix jacchus] gi|296231399|ref|XP_002761127.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 2 [Callithrix jacchus] Length = 493 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K L EW + P Y+ R D F+ +V ++ + D SK+ AEQ A Sbjct: 370 PKMCLLEWCRREKLPQPMYETVQR---PIDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 426 Query: 216 AAEVLKREGI 225 A L+ +G+ Sbjct: 427 AIVCLRSQGL 436 >gi|126306309|ref|XP_001366536.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Monodelphis domestica] Length = 1256 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V + G GM S K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPTYEIRAV-GNKNRQKFMCEVRVEGFNY-TGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 43.9 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + V EYK T GPDH+ F + I + + +K+ Sbjct: 182 NAKARLNQFFQKE-KVQGEYKYTQV-GPDHNRSFIAEMTIYVKQLGRRIFAREHGSNKKL 239 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 240 AAQSCALSLVRQL 252 >gi|66911375|gb|AAH97173.1| Zgc:114114 [Danio rerio] Length = 155 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 5/117 (4%) Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHA 167 I ++I AL G AG F+ + + + F D L E Sbjct: 9 DHILQGTFFAVIGALEQSSGPVRAGLFIRDFLVTQLIGKDLFDMWKVVDPMGLLVEELTR 68 Query: 168 KFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K PE ++ +G P + V + AQG + AE+ AA L++ Sbjct: 69 KGVALPEPRLIRSAGASTVLPLYFVGLYSDRKLLAQGPGETVLIAEEEAARVALRKL 125 >gi|332227763|ref|XP_003263057.1| PREDICTED: tRNA-dihydrouridine synthase 2 [Nomascus leucogenys] Length = 540 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K L EW + P Y+ R D F+ +V ++ + D SK+ AEQ A Sbjct: 417 PKMCLLEWCRREKLAQPVYETVQR---PLDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 473 Query: 216 AAEVLKREGI 225 A L+ +G+ Sbjct: 474 AIVCLRSQGL 483 >gi|258571013|ref|XP_002544310.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237904580|gb|EEP78981.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 266 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 22/145 (15%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH-------------------FDS 65 +A+TH S + +RL +LG + L + L + + Sbjct: 116 QAVTHKSFDQGRRGFNDRLAYLGKHAVALQATLALMQNPASHSQKLPEDPHNRTPFAHPA 175 Query: 66 AKEGEL--SVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESL 122 E E+ S +L + + +AR+ +L +R + R S + + A + ++ Sbjct: 176 LDEIEVLSSPTAETLTEKKRIAALARQYELEGVLRWLPRMPRHFTQSGIDVVLAQTMYAI 235 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA 147 + A+ L+ G V+ V + + Sbjct: 236 VGAVTLERGGAVSNRIVRERILKPL 260 >gi|82469834|gb|ABB77175.1| R2D2 [Drosophila melanogaster] Length = 311 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + LQE+ P Y P D + VE+ + A G SKR A+ Sbjct: 3 NKSAVSALQEFCARTQINLPTYSFI----PGEDGGYVCKVELLEIE-AIGNGRSKRDAKH 57 Query: 214 VAAAEVLKR 222 +AA+ +L++ Sbjct: 58 LAASNILRK 66 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207 + RD EL+++ + P ++ +SG P F ++ + S Sbjct: 88 ELTNLNRDMVKELRDYCVRREMPLPSIEIVQQSGTPSAPEFVACCSVASIVR---YGKSD 144 Query: 208 -KRAAEQVAAAEVL 220 K+ A Q AA E+L Sbjct: 145 KKKDARQRAAIEML 158 >gi|82469820|gb|ABB77168.1| R2D2 [Drosophila teissieri] Length = 321 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + LQE+ + P Y+ G D + V++ + A G SKR A+ Sbjct: 10 NKSAVSALQEFCAKTKNIPPSYEYID--GEDGG--YVCKVDLMEVE-AYGNGRSKRDAKH 64 Query: 214 VAAAEVLKR 222 +AA +L++ Sbjct: 65 LAAVNILRK 73 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217 EL+++ P ++ +SG + P F ++ + S K+ A Q AA Sbjct: 109 ELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDARQRAAI 165 Query: 218 EVL 220 E+L Sbjct: 166 EML 168 >gi|157382880|gb|ABV48875.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157382874|gb|ABV48872.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157382872|gb|ABV48871.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157382868|gb|ABV48869.1| maleless [Drosophila melanogaster] gi|157382870|gb|ABV48870.1| maleless [Drosophila melanogaster] gi|157382876|gb|ABV48873.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157382866|gb|ABV48868.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157382862|gb|ABV48866.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157382860|gb|ABV48865.1| maleless [Drosophila melanogaster] gi|157382864|gb|ABV48867.1| maleless [Drosophila melanogaster] gi|157382878|gb|ABV48874.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157382858|gb|ABV48864.1| maleless [Drosophila melanogaster] Length = 1286 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157382856|gb|ABV48863.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157382854|gb|ABV48862.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 21/112 (18%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFR------------RDAKTELQEWAHAKFGVTPEYK 176 DGG + +D+ +QR + + +AK L + A +YK Sbjct: 132 DGGYRY--SVIDRIQEQRDMNEAEAFDVNAAIHGNWTIENAKERLNIYKQANNIRD-DYK 188 Query: 177 VTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T GP+H F + I + A+ +K++A + A ++++ Sbjct: 189 YTPV-GPEHARSFLAELSIYVPALNRTVTARESGSNKKSASKSCALSLVRQL 239 >gi|157382852|gb|ABV48861.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157824892|gb|ABV82525.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157824890|gb|ABV82524.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157824888|gb|ABV82523.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157824886|gb|ABV82522.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157824884|gb|ABV82521.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157824882|gb|ABV82520.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157824878|gb|ABV82518.1| maleless [Drosophila melanogaster] gi|157824880|gb|ABV82519.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157824876|gb|ABV82517.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157906|gb|AAC41573.1| maleless protein [Drosophila melanogaster] Length = 1293 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|62474635|ref|NP_476642.3| maleless, isoform B [Drosophila melanogaster] gi|61678431|gb|AAM68336.3| maleless, isoform B [Drosophila melanogaster] Length = 226 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|17136342|ref|NP_476641.1| maleless, isoform A [Drosophila melanogaster] gi|76803804|sp|P24785|MLE_DROME RecName: Full=Dosage compensation regulator; AltName: Full=ATP-dependent RNA helicase mle; AltName: Full=Protein male-less; AltName: Full=Protein maleless; AltName: Full=Protein no action potential gi|7302201|gb|AAF57297.1| maleless, isoform A [Drosophila melanogaster] Length = 1293 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P++ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|296231401|ref|XP_002761128.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 3 [Callithrix jacchus] Length = 458 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K L EW + P Y+ R D F+ +V ++ + D SK+ AEQ A Sbjct: 335 PKMCLLEWCRREKLPQPMYETVQR---PIDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 391 Query: 216 AAEVLKREGI 225 A L+ +G+ Sbjct: 392 AIVCLRSQGL 401 >gi|315048697|ref|XP_003173723.1| RNase III domain-containing protein [Arthroderma gypseum CBS 118893] gi|311341690|gb|EFR00893.1| RNase III domain-containing protein [Arthroderma gypseum CBS 118893] Length = 267 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 22/145 (15%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF-----DSAK------------ 67 +A+TH S + +RL + G +I+ L S L + Sbjct: 115 QAVTHKSFDQGRRGFNDRLAYFGKQIILLQSSLALVQNPAAYARPQKPDPFGRQPYESAA 174 Query: 68 ----EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESL 122 E + L + S +AR + +R ++ D S + +I + ++ Sbjct: 175 LKGLEVLSQNTRSQLTRRKEMSALARHYGINEVMRWVPRMQHDLTESGVDTIYTHAMYAI 234 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA 147 + A+ L+ G +VA V + Sbjct: 235 VGAIALEHGSKVANEIVRDRILKPL 259 >gi|148672022|gb|EDL03969.1| TAR (HIV) RNA binding protein 2, isoform CRA_c [Mus musculus] Length = 140 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 2/47 (4%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG-LAPAQ-GMDCS 207 E K PEY VT SGP H FT+ + + G S Sbjct: 36 ELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVERFIEIGNWGKGGS 82 >gi|17533821|ref|NP_494501.1| hypothetical protein F39E9.7 [Caenorhabditis elegans] Length = 136 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + +L E+A + P ++ F + +G SK A++ A Sbjct: 34 NPVAQLNEYAQKFYKKYPTFEFVKEQAVGKHRVFIIQATFEDKTL-EGRGPSKMIAKRAA 92 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 93 AEAILESIG 101 >gi|8923374|ref|NP_060273.1| tRNA-dihydrouridine synthase 2-like [Homo sapiens] gi|73620832|sp|Q9NX74|DUS2L_HUMAN RecName: Full=tRNA-dihydrouridine synthase 2-like; Short=hDUS2; AltName: Full=Up-regulated in lung cancer protein 8; Short=URLC8 gi|7020473|dbj|BAA91143.1| unnamed protein product [Homo sapiens] gi|16306804|gb|AAH06527.1| Dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) [Homo sapiens] gi|71006842|dbj|BAE07219.1| up-regulated in lung cancer 8 [Homo sapiens] gi|119603613|gb|EAW83207.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens] gi|119603614|gb|EAW83208.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens] gi|119603615|gb|EAW83209.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens] gi|158254588|dbj|BAF83267.1| unnamed protein product [Homo sapiens] gi|312152458|gb|ADQ32741.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) [synthetic construct] Length = 493 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K L EW + P Y+ R D F+ +V ++ + D SK+ AEQ A Sbjct: 370 PKMCLLEWCRREKLAQPVYETVQR---PLDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 426 Query: 216 AAEVLKREGI 225 A L+ +G+ Sbjct: 427 AIVCLRSQGL 436 >gi|198414898|ref|XP_002128212.1| PREDICTED: similar to LOC495438 protein [Ciona intestinalis] Length = 802 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +Y + ++G RFT V G +G +K+ A+ AA L R Sbjct: 189 KYDLIEQTGNGTSTRFTFQVVFRGEIY-KGSGVNKKMAKHEAAKAALSR 236 Score = 40.4 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 ++ L E G +Y R G FT+ V ++G A QG +K+ A+ Sbjct: 319 KNPVQLLNEMV----GPGIQYNCVDRVGDQKSHYFTMEVCLNGRAY-QGQGKNKKLAKAG 373 Query: 215 AAAEVLK 221 A +L+ Sbjct: 374 VAMRILR 380 >gi|194862942|ref|XP_001970198.1| GG10497 [Drosophila erecta] gi|190662065|gb|EDV59257.1| GG10497 [Drosophila erecta] Length = 322 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 L + A + LQE+ + P Y G D + V++ L A G S Sbjct: 4 LAEPIDNKSAVSALQEFCAKTKNIPPTYNFID--GEDGG--YVCKVDLMEL-MAYGNGRS 58 Query: 208 KRAAEQVAAAEVLKR 222 KR A+ +AA +L++ Sbjct: 59 KRDAKHLAAVNILRK 73 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217 L+++ P +V +SG + P F ++ + S K+ A Q AA Sbjct: 110 ALRDYCVRHEMPLPSIEVVQQSGSPNAPEFVACCSVASIVR---YGKSDKKKDARQRAAI 166 Query: 218 EVL 220 E+L Sbjct: 167 EML 169 >gi|158298855|ref|XP_001238071.2| AGAP009887-PA [Anopheles gambiae str. PEST] gi|157014087|gb|EAU76055.2| AGAP009887-PA [Anopheles gambiae str. PEST] Length = 324 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + PE GP H P F I + +G +K+ A+Q+A E++K Sbjct: 121 QRNFPLPEIVQVRSYGPSHAPVFEFECRIREIVR-RGSHSTKKGAKQIACQEMIK 174 Score = 44.7 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 8/72 (11%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHD---PRFTVVVEISGLAPAQGMDCSKRAAEQ 213 T LQE P Y+ H F+ +V G A G+ SK+ A+ Sbjct: 12 PITMLQEMCFKVKSTLPIYQFLGEECSPHSVNVKLFSYMVTALGKQ-ATGVGRSKQEAKH 70 Query: 214 VAA----AEVLK 221 +A L+ Sbjct: 71 ESAWQLIRLALE 82 >gi|90083447|dbj|BAE90806.1| unnamed protein product [Macaca fascicularis] Length = 493 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K L EW + P Y+ R D F+ +V ++ + D SK+ AEQ A Sbjct: 370 PKMCLLEWCRREKLAQPVYETVQR---PLDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 426 Query: 216 AAEVLKREGI 225 A L+ +G+ Sbjct: 427 AIVCLRSQGL 436 >gi|221236967|gb|ACM16036.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Aotus trivirgatus] Length = 549 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 6/58 (10%) Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +A T Y+ + +GP F ++ G +K+ A+Q+AA Sbjct: 108 FAQKNRL-TVNYEQCASGVNGPAG---FHYKCKVGQKEYGIGTGSTKQEAKQMAAKLA 161 Score = 42.0 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 EL ++ + V Y+ SGP HD RFT V I G + Sbjct: 13 ELNKYRQKQGVVL-RYEELPNSGPPHDRRFTFQVIIDGREFPEAEG 57 >gi|114663254|ref|XP_001166802.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 5 [Pan troglodytes] Length = 477 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K L EW + P Y+ R D F+ +V ++ + D SK+ AEQ A Sbjct: 354 PKMCLLEWCRREKLAQPVYETVQR---PLDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 410 Query: 216 AAEVLKREGI 225 A L+ +G+ Sbjct: 411 AIVCLRSQGL 420 >gi|114663240|ref|XP_001166638.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 1 [Pan troglodytes] gi|114663242|ref|XP_001166736.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 3 [Pan troglodytes] gi|114663244|ref|XP_001166768.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 4 [Pan troglodytes] gi|114663246|ref|XP_001166835.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 6 [Pan troglodytes] gi|114663248|ref|XP_001166866.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 7 [Pan troglodytes] gi|114663250|ref|XP_001166896.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 8 [Pan troglodytes] gi|114663252|ref|XP_001166928.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 9 [Pan troglodytes] Length = 493 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K L EW + P Y+ R D F+ +V ++ + D SK+ AEQ A Sbjct: 370 PKMCLLEWCRREKLAQPVYETVQR---PLDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 426 Query: 216 AAEVLKREGI 225 A L+ +G+ Sbjct: 427 AIVCLRSQGL 436 >gi|198423925|ref|XP_002127604.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Ciona intestinalis] Length = 1243 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-----MDCSKRA 210 ++K L ++ + PEYK + GPDH+ F + + + +K+ Sbjct: 189 NSKGRLHQFFQQN-KINPEYK-YSQVGPDHNRSFISELVVYIKKLGRSLHAREHGSNKKN 246 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 247 ASQSCALSIIRQL 259 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAA 216 KT L W K +TP Y SG P+F V + G+ G +K+ A+ AA Sbjct: 5 KTFLYAWL-GKQKMTPSYD-IQPSGSKARPKFMCEVRVDGIPYVGIGNSTNKKDAQANAA 62 Query: 217 AE 218 + Sbjct: 63 YD 64 >gi|284504268|ref|YP_003406983.1| ribonuclease III [Marseillevirus] gi|282935706|gb|ADB04021.1| ribonuclease III [Marseillevirus] Length = 312 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 1/97 (1%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA-KEGELSVRFN 76 N + A TH ++ + + +YE E +GD ++ I + L+ + Sbjct: 29 KNLAKFRVAFTHKTVQTNDRNNYELYELVGDSLVNAAILGFIRTKRPEITDVETLTRIKH 88 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 + S S +A + + V + K + + Sbjct: 89 YIQSRSFLSLLAFQNGYFEHVTVGEEFAKTILEGVEK 125 >gi|194383804|dbj|BAG59260.1| unnamed protein product [Homo sapiens] Length = 458 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K L EW + P Y+ R D F+ +V ++ + D SK+ AEQ A Sbjct: 335 PKMCLLEWCRREKLAQPVYETVQR---PLDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 391 Query: 216 AAEVLKREGI 225 A L+ +G+ Sbjct: 392 AIVCLRSQGL 401 >gi|109128993|ref|XP_001097732.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Macaca mulatta] Length = 492 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K L EW + P Y+ R D F+ +V ++ + D SK+ AEQ A Sbjct: 369 PKMCLLEWCRREKLAQPVYETVQR---PLDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 425 Query: 216 AAEVLKREGI 225 A L+ +G+ Sbjct: 426 AIVCLRSQGL 435 >gi|51105080|gb|AAT97100.1| putative double strand RNA binding protein [Lymnaea stagnalis] Length = 141 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 14/36 (38%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 + ELQE+ K P Y+ GP H F Sbjct: 104 NPIGELQEFTQKKLLKPPIYEFVTEQGPPHAREFIC 139 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 + LQE+A K +TP+Y + G H+P F + V + A A Sbjct: 9 PISYLQEYA-TKHAITPQYDLIANEGAVHEPTFIMRVTVGDNAVAT 53 >gi|19113607|ref|NP_596815.1| mitochondrial ribosomal protein subunit L15 [Schizosaccharomyces pombe 972h-] gi|74626357|sp|Q9Y7Z7|RM15_SCHPO RecName: Full=60S ribosomal protein L15, mitochondrial; Flags: Precursor gi|5579046|emb|CAB51333.1| mitochondrial ribosomal protein subunit L15 [Schizosaccharomyces pombe] Length = 210 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 4/127 (3%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 +++SL E+ +TH S H + E +G+ ++ + + + + + Sbjct: 66 SDKSLREQIVTHKSYKHGLKRYNEPFVSVGNAVIDVCLLNHYLESGNFSTIPSYKDL-VN 124 Query: 78 LVSAETCSQVARELDLA---SFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 L S ++VA++ + I S I + +V L+A +Y G Sbjct: 125 LRSPARLAEVAKKWNPETATQCILPLKGPNSPSSSSFEKIYSSIVSGLVAVVYFQKGGVE 184 Query: 135 AGTFVDK 141 A F K Sbjct: 185 AMNFCKK 191 >gi|326468739|gb|EGD92748.1| hypothetical protein TESG_00316 [Trichophyton tonsurans CBS 112818] gi|326481349|gb|EGE05359.1| RNase III domain-containing protein [Trichophyton equinum CBS 127.97] Length = 267 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 24/146 (16%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL------------- 71 +A+TH S + +RL + G +I+ L S L + +A L Sbjct: 115 QAVTHKSFDQGRRGFNDRLAYFGKQIILLQASLALVQN-PTAYAQRLKPDPFERLPYDSA 173 Query: 72 ---------SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-SFMTSIQADVVES 121 + L + S +AR + +R ++ D+ S + +I + + Sbjct: 174 ALKGLEVLSQNTRSQLTRKKEMSALARHYGVNEVMRWVPRMQHDLTESGVDTIYTHAMYA 233 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA 147 +I A+ L+ G +VA V + Sbjct: 234 IIGAIALENGSKVANEIVRDRILKPL 259 >gi|10120841|pdb|1EKZ|A Chain A, Nmr Structure Of The Complex Between The Third Dsrbd From Drosophila Staufen And A Rna Hairpin Length = 76 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 K +T +KV GP H F + G +G K+ +++ AA ++L Sbjct: 19 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKML 70 >gi|194765667|ref|XP_001964948.1| GF21798 [Drosophila ananassae] gi|190617558|gb|EDV33082.1| GF21798 [Drosophila ananassae] Length = 316 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + LQE+ P Y+ G D + V + + A G SKR A+ Sbjct: 3 NKSAVSSLQEFCAKTKNCPPTYEFID--GEDGG--YVCKVTLLEID-AYGNGRSKRDAKH 57 Query: 214 VAAAEVLKR 222 +AA+ ++++ Sbjct: 58 LAASNIMRK 66 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217 EL+++ P ++ + G + P F +++ L S K+ A Q AA Sbjct: 105 ELRDFCVRHEMPLPTIEIVQQCGTPNAPEFVACCKVASLTR---YGKSDKKKDARQRAAI 161 Query: 218 EVL 220 E+L Sbjct: 162 EML 164 >gi|253723115|pdb|1STU|A Chain A, Double Stranded Rna Binding Domain Length = 68 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 K +T +KV GP H F + G +G K+ +++ AA ++L Sbjct: 11 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKML 62 >gi|156373220|ref|XP_001629431.1| predicted protein [Nematostella vectensis] gi|156216431|gb|EDO37368.1| predicted protein [Nematostella vectensis] Length = 221 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L E A K T ++ + FT V I A G +K+ A++ A Sbjct: 98 NPISILTESAQ-KSKKTINFQELQST-----NLFTCAVIIQDKLVATGEASNKKDAKRNA 151 Query: 216 AAEVL 220 A L Sbjct: 152 AENAL 156 >gi|158296133|ref|XP_316626.4| AGAP006599-PA [Anopheles gambiae str. PEST] gi|157016367|gb|EAA11305.4| AGAP006599-PA [Anopheles gambiae str. PEST] Length = 1309 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213 D K+ L W P + V GP H RF V I G+ G +K+ +E+ Sbjct: 1 MDMKSFLLCWCQKNV-CEPAFDV-RPLGPKHRQRFLCEVRIPGINYIGVGNSTNKKDSEK 58 Query: 214 VAAAE 218 A+ + Sbjct: 59 NASRD 63 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV--VEISGL---APAQGMDCSKRA 210 +AK++L +W + E+K T GPDH F V + L + +K++ Sbjct: 161 NAKSKLNQWLQ-HHKIKAEFKYTSI-GPDHAKSFIAEMIVYVRELNRTITGRESGSNKQS 218 Query: 211 AEQVAAAEVLKRE 223 A + A ++++ Sbjct: 219 ASKSCALSLIRQL 231 >gi|330804651|ref|XP_003290306.1| hypothetical protein DICPUDRAFT_154803 [Dictyostelium purpureum] gi|325079593|gb|EGC33186.1| hypothetical protein DICPUDRAFT_154803 [Dictyostelium purpureum] Length = 441 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 13/138 (9%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERL---EFLGD--RILGLLISTLLFNHFDSAKE 68 G F N L KAL S ++ +F D RI L++S L+ F + Sbjct: 114 GLKFNNSELQSKAL---SPEIKITQNQHIHIISDFFNDGARIFPLVVSKYLYKRFPNLTT 170 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-TSIQADVVESLIAALY 127 G + +S S V + L+L +++V + + S+ + S I A+Y Sbjct: 171 GYALAFNSFFLSRVFISSVFQYLNLQDYLKV----DQTISSYKYEKLYYTTFLSFIGAVY 226 Query: 128 LDGGIEVAGTFVDKYWKQ 145 D G + + + Sbjct: 227 QDQGENAIEEKIVPLFIE 244 >gi|311264943|ref|XP_003130412.1| PREDICTED: ATP-dependent RNA helicase A-like [Sus scrofa] Length = 160 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V + G GM S K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNY-TGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 >gi|296478925|gb|DAA21040.1| ATP-dependent RNA helicase A [Bos taurus] Length = 1287 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V + G GM S K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNY-TGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 177 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQIGRRIFAREHGSNKKL 234 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 235 AAQSCALSLVRQL 247 >gi|27806665|ref|NP_776461.1| ATP-dependent RNA helicase A [Bos taurus] gi|2500541|sp|Q28141|DHX9_BOVIN RecName: Full=ATP-dependent RNA helicase A; AltName: Full=DEAH box protein 9; AltName: Full=Nuclear DNA helicase II; Short=NDH II gi|577739|emb|CAA58036.1| nuclear DNA helicase II [Bos taurus] Length = 1287 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V + G GM S K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNY-TGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 177 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQIGRRIFAREHGSNKKL 234 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 235 AAQSCALSLVRQL 247 >gi|288804124|gb|ADC53790.1| dsRNA-binding interferon resistance protein [Pseudocowpox virus] Length = 182 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH P FT + +SG A SK+ A A Sbjct: 108 NPVSAVNEFCMITHRHL-EFCETRSGGQDHCPNFTCTIMVSGKVIATADGTSKKMARHAA 166 Query: 216 AAEVL 220 L Sbjct: 167 CVAAL 171 >gi|254569420|ref|XP_002491820.1| hypothetical protein [Pichia pastoris GS115] gi|238031617|emb|CAY69540.1| Hypothetical protein PAS_chr2-2_0365 [Pichia pastoris GS115] gi|328351680|emb|CCA38079.1| hypothetical protein PP7435_Chr2-0386 [Pichia pastoris CBS 7435] Length = 349 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 72/214 (33%), Gaps = 26/214 (12%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F N++LL K L + S ++ + L +LG + L+S L S L Sbjct: 145 TFENKALLHKKLV---SNDSSVQTNDSLVYLGSKFCHCLVSFKLNELHPSLDAELLDCAV 201 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG---- 131 ++ A L+ + S K F + A+ + +AAL ++ G Sbjct: 202 QEVLHFNNVHIWALRLNFRELLE-SKFPAKQ---FRPKVMAECFMAYVAALKIETGSDYN 257 Query: 132 -IEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 + + ++ K ++ K R AK L K Y F + Sbjct: 258 LLTLLTQWILKLASEKIYKLRVENLVDRSAKDSL-----HKLMGPMRYATAF-----NGS 307 Query: 188 RFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVL 220 +F + G G +K +E +A L Sbjct: 308 KFISKCLNNKGEVLGHGSGYNKTDSELRSAMHAL 341 >gi|307383|gb|AAB48855.1| RNA helicase A [Homo sapiens] Length = 1279 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V++ G GM S K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPTYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 180 NAKARLIQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 238 AAQSCALSLVRQL 250 >gi|301776997|ref|XP_002923919.1| PREDICTED: ATP-dependent RNA helicase A-like [Ailuropoda melanoleuca] Length = 1276 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K L W K +TP Y++ G + +F V + G G +K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSN 60 Query: 215 AAAE 218 AA + Sbjct: 61 AARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 181 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 238 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 239 AAQSCALSLVRQL 251 >gi|281337823|gb|EFB13407.1| hypothetical protein PANDA_013142 [Ailuropoda melanoleuca] Length = 1155 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K L W K +TP Y++ G + +F V + G G +K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSN 60 Query: 215 AAAE 218 AA + Sbjct: 61 AARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 181 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 238 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 239 AAQSCALSLVRQL 251 >gi|73960433|ref|XP_859097.1| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA helicase II) (NDH II) (DEAH-box protein 9) isoform 3 [Canis familiaris] Length = 862 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K L W K +TP Y++ G + +F V + G G +K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSN 60 Query: 215 AAAE 218 AA + Sbjct: 61 AARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 181 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 238 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 239 AAQSCALSLVRQL 251 >gi|73960441|ref|XP_859257.1| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA helicase II) (NDH II) (DEAH-box protein 9) isoform 6 [Canis familiaris] Length = 1284 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K L W K +TP Y++ G + +F V + G G +K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSN 60 Query: 215 AAAE 218 AA + Sbjct: 61 AARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 181 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 238 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 239 AAQSCALSLVRQL 251 >gi|73960443|ref|XP_859296.1| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA helicase II) (NDH II) (DEAH-box protein 9) isoform 7 [Canis familiaris] Length = 1284 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K L W K +TP Y++ G + +F V + G G +K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSN 60 Query: 215 AAAE 218 AA + Sbjct: 61 AARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 181 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 238 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 239 AAQSCALSLVRQL 251 >gi|73960435|ref|XP_849581.1| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA helicase II) (NDH II) (DEAH-box protein 9) isoform 2 [Canis familiaris] gi|73960445|ref|XP_537154.2| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA helicase II) (NDH II) (DEAH-box protein 9) isoform 1 [Canis familiaris] Length = 1276 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K L W K +TP Y++ G + +F V + G G +K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSN 60 Query: 215 AAAE 218 AA + Sbjct: 61 AARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 181 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 238 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 239 AAQSCALSLVRQL 251 >gi|114663256|ref|XP_001166706.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 2 [Pan troglodytes] Length = 406 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215 K L EW + P Y+ R D F+ +V ++ + D SK+ AEQ A Sbjct: 283 PKMCLLEWCRREKLAQPVYETVQR---PLDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 339 Query: 216 AAEVLKREGI 225 A L+ +G+ Sbjct: 340 AIVCLRSQGL 349 >gi|218191244|gb|EEC73671.1| hypothetical protein OsI_08218 [Oryza sativa Indica Group] Length = 937 Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 19/36 (52%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ V I G +G+ +++ A+ AA L+ Sbjct: 724 QFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNL 759 >gi|115447513|ref|NP_001047536.1| Os02g0639000 [Oryza sativa Japonica Group] gi|49388226|dbj|BAD25346.1| double-stranded RNA-binding domain (DsRBD)-containing protein-like [Oryza sativa Japonica Group] gi|49388720|dbj|BAD25901.1| double-stranded RNA-binding domain (DsRBD)-containing protein-like [Oryza sativa Japonica Group] gi|113537067|dbj|BAF09450.1| Os02g0639000 [Oryza sativa Japonica Group] gi|215695163|dbj|BAG90354.1| unnamed protein product [Oryza sativa Japonica Group] gi|222623318|gb|EEE57450.1| hypothetical protein OsJ_07667 [Oryza sativa Japonica Group] Length = 940 Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 19/36 (52%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ V I G +G+ +++ A+ AA L+ Sbjct: 727 QFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNL 762 >gi|150456419|ref|NP_031868.2| ATP-dependent RNA helicase A [Mus musculus] Length = 1383 Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V + G A GM S K+ A+ Sbjct: 3 DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 182 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 239 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 240 AAQSCALSLVRQL 252 >gi|157821633|ref|NP_001100654.1| ATP-dependent RNA helicase A [Rattus norvegicus] gi|149058390|gb|EDM09547.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 (predicted) [Rattus norvegicus] Length = 1174 Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V + G A GM S K+ A+ Sbjct: 3 DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 183 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 240 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 241 AAQSCALSLVRQL 253 >gi|148707490|gb|EDL39437.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, isoform CRA_b [Mus musculus] Length = 1384 Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V + G A GM S K+ A+ Sbjct: 4 DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 60 Query: 214 VAAAE 218 AA + Sbjct: 61 NAARD 65 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 183 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 240 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 241 AAQSCALSLVRQL 253 >gi|148707489|gb|EDL39436.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, isoform CRA_a [Mus musculus] Length = 1174 Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V + G A GM S K+ A+ Sbjct: 3 DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 183 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 240 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 241 AAQSCALSLVRQL 253 >gi|58047678|gb|AAH89159.1| Dhx9 protein [Mus musculus] Length = 459 Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V + G A GM S K+ A+ Sbjct: 3 DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 182 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 239 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 240 AAQSCALSLVRQL 252 >gi|2688940|gb|AAC05301.1| RNA helicase A [Mus musculus] Length = 161 Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V + G A GM S K+ A+ Sbjct: 3 DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 >gi|74202542|dbj|BAE24846.1| unnamed protein product [Mus musculus] Length = 735 Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V + G A GM S K+ A+ Sbjct: 3 DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 183 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 240 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 241 AAQSCALSLVRQL 253 >gi|71153505|sp|O70133|DHX9_MOUSE RecName: Full=ATP-dependent RNA helicase A; AltName: Full=DEAH box protein 9; Short=mHEL-5; AltName: Full=Nuclear DNA helicase II; Short=NDH II Length = 1380 Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V + G A GM S K+ A+ Sbjct: 3 DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 182 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 239 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 240 AAQSCALSLVRQL 252 >gi|324504592|gb|ADY41982.1| tRNA-dihydrouridine synthase 2-like protein [Ascaris suum] Length = 454 Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 4/93 (4%) Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 E F+D + + L+ R K L E P Y FR +D R+ + Sbjct: 354 ETGIRFIDLTFPPKRLRDRCGARTPKCVLNELCDESGIERPIYDCKFR---PNDKRYEAL 410 Query: 193 VEISGLAPAQGMD-CSKRAAEQVAAAEVLKREG 224 +E+ G + +KR AEQVAA L G Sbjct: 411 IEVDGCKFLSRVGQPNKRMAEQVAALAALVGLG 443 >gi|3021544|emb|CAA10952.1| OV20.0L [Orf virus] Length = 183 Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG A SK+ A A Sbjct: 109 NPVSAVNEFCMMTRRSL-EFCETRSGGEDHCPRFTCTITISGKVVAAADGASKKLARHTA 167 Query: 216 AAEVL 220 + L Sbjct: 168 CSSAL 172 >gi|302505423|ref|XP_003014418.1| hypothetical protein ARB_06980 [Arthroderma benhamiae CBS 112371] gi|291178239|gb|EFE34029.1| hypothetical protein ARB_06980 [Arthroderma benhamiae CBS 112371] Length = 267 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 22/145 (15%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH-----------------FDSAK 67 +A+TH S + +RL + G +I+ L S L + +DSA Sbjct: 115 QAVTHKSFDQGRRGFNDRLAYFGKQIILLQASLALVQNPTAYAQPSKPDPFERLPYDSAA 174 Query: 68 EGEL----SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-SFMTSIQADVVESL 122 L + L + S +AR + +R ++ D+ S + +I + ++ Sbjct: 175 LKGLEVLSQNTRSQLTRKKEMSALARHYGVNEVMRWVPRMQHDLTESGVDTIYTHAMYAI 234 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA 147 I A+ L+ G +VA V + Sbjct: 235 IGAIALEHGSKVANEIVRDRILKPL 259 >gi|82469816|gb|ABB77166.1| R2D2 [Drosophila santomea] Length = 309 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 + LQE+ + P Y+ G D + V++ + A G SKR A+ +AA Sbjct: 3 SALQEFCAKTKNIPPAYEFID--GEDGG--YVCKVDLMEVE-AYGNGRSKRDAKHLAAVN 57 Query: 219 VLKR 222 +L++ Sbjct: 58 ILRK 61 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217 EL+++ P ++ +SG + P F ++ + S K+ A Q AA Sbjct: 97 ELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDARQRAAI 153 Query: 218 EVL 220 E+L Sbjct: 154 EML 156 >gi|324506281|gb|ADY42685.1| ATP-dependent RNA helicase A [Ascaris suum] Length = 792 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 6/73 (8%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210 ++K L E+ Y G D F + A SK+ Sbjct: 178 NSKRHLNEFIQKIKQPPISYNTRGV-GTDSARTFIAEAALFVPEAGRKFTAHAQGSSKKV 236 Query: 211 AEQVAAAEVLKRE 223 AE A ++++ Sbjct: 237 AESSCALSLIRQL 249 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQV 214 D K L W K P Y +T +G F + +SG G+ +K+ A Sbjct: 4 DIKGWLYGWLGKKKLGVPTYNITTNAGRGRAR-FKCELRVSGQPHVGLGVSVNKKDAATN 62 Query: 215 AAAE 218 AA + Sbjct: 63 AARD 66 >gi|324500369|gb|ADY40175.1| ATP-dependent RNA helicase A [Ascaris suum] Length = 1452 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 6/73 (8%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210 ++K L E+ Y G D F + A SK+ Sbjct: 178 NSKRHLNEFIQKIKQPPISYNTRGV-GTDSARTFIAEAALFVPEAGRKFTAHAQGSSKKV 236 Query: 211 AEQVAAAEVLKRE 223 AE A ++++ Sbjct: 237 AESSCALSLIRQL 249 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQV 214 D K L W K P Y +T +G F + +SG G+ +K+ A Sbjct: 4 DIKGWLYGWLGKKKLGVPTYNITTNAGRGRAR-FKCELRVSGQPHVGLGVSVNKKDAATN 62 Query: 215 AAAE 218 AA + Sbjct: 63 AARD 66 >gi|159164135|pdb|2DIX|A Chain A, Solution Structure Of The Dsrm Domain Of Protein Activator Of The Interferon-Induced Protein Kinase Length = 84 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ H P FT V + + G SK+ A+ Sbjct: 8 KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 65 Query: 215 AAAEVLK 221 AA + Sbjct: 66 AAEAAIN 72 >gi|31096345|gb|AAP43510.1| E3L-like protein [Orf virus] gi|41018507|gb|AAR98115.1| ORF020 dsRNA-binding PKR inhibitor [Orf virus] Length = 183 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG + SK+ A A Sbjct: 109 NPVSAVNEFCMMTRRSL-EFCETRSGGEDHCPRFTCTITISGKVVSVADGASKKLARHTA 167 Query: 216 AAEVL 220 + L Sbjct: 168 CSSAL 172 >gi|302854164|ref|XP_002958592.1| hypothetical protein VOLCADRAFT_99895 [Volvox carteri f. nagariensis] gi|300256053|gb|EFJ40329.1| hypothetical protein VOLCADRAFT_99895 [Volvox carteri f. nagariensis] Length = 2198 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T+L E A + V ++ + G +T+ G +G +K+ A+++A Sbjct: 1777 NPVTKLNEIAQ-RNKVRLAFR-EAKDGESGSVGWTITAIYGGKDIGRGHAATKKDAKRLA 1834 Query: 216 AAEVLKREGI 225 A + LK GI Sbjct: 1835 AMDGLKALGI 1844 >gi|310796629|gb|EFQ32090.1| 54S ribosomal protein L3 [Glomerella graminicola M1.001] Length = 428 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 5/115 (4%) Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK---TELQEWAHA 167 + A V ++ A+Y G + A F+D + R + K K EL Sbjct: 279 RNNAHAAFVRAVAGAVYAHAGRDAARAFIDAHVLSRKVDLEKLF-SFKLPTRELAMLCAR 337 Query: 168 KFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + P ++ +G P + V + +G S A A+ LK Sbjct: 338 EGFEAPVARLESETGRMSRTPVYVVGIYSGRDKLGEGTGASLDFARLQASMNALK 392 Score = 41.2 bits (96), Expect = 0.100, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 29/73 (39%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +AL S S + L +G ++G +S L H+ L + ++ Sbjct: 118 LARALVDPSADPSPNFNNANLAVVGGTLIGYHVSEWLIAHYPRLPMAILYEAMRAYAGSD 177 Query: 83 TCSQVARELDLAS 95 + +VA + + S Sbjct: 178 SLYRVASQWGVES 190 >gi|73960437|ref|XP_859173.1| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA helicase II) (NDH II) (DEAH-box protein 9) isoform 4 [Canis familiaris] Length = 223 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K L W K +TP Y++ G + +F V + G G +K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSN 60 Query: 215 AAAE 218 AA + Sbjct: 61 AARD 64 >gi|270006306|gb|EFA02754.1| hypothetical protein TcasGA2_TC008487 [Tribolium castaneum] Length = 742 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +Y + ++GPDH P F + +++ G+ SK A +VL+ Sbjct: 190 KYTLVEKTGPDHKPTFKMAAKVNEKTYF-GLGGSKAKARMNVVEQVLENL 238 Score = 38.9 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F V + I G + G+ SK++A++VAA L Sbjct: 356 EFKVTITI-GKSLFVGIGPSKKSAKKVAALSAL 387 >gi|224111576|ref|XP_002315906.1| predicted protein [Populus trichocarpa] gi|222864946|gb|EEF02077.1| predicted protein [Populus trichocarpa] Length = 1053 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 57/182 (31%), Gaps = 33/182 (18%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 LEF + ++ + + E + N + + +L S +R+ Sbjct: 874 LEF----YMQPSVAEMYQSLRRELDELIQTKLLNPRMD------IHMHHELLSAVRLLVS 923 Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 F + + + SG ++K++LQ Sbjct: 924 EDNCDGRF-----------VFGCHFFKSSKPAVFATQPTLISRG--DSGPGGDNSKSQLQ 970 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD---CSKRAAEQVAAAEV 219 P YK + +F VE +G+ M +K++AE+ AAAE Sbjct: 971 TLLTRAGYAAPSYKTKQLK----NNQFRATVEFNGMQI---MGQPCNNKKSAEKDAAAEA 1023 Query: 220 LK 221 L+ Sbjct: 1024 LQ 1025 >gi|82582933|gb|ABB84392.1| interferon resistance protein [Orf virus] Length = 166 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT ++IS A+ SK+ A A Sbjct: 92 NPVSAVNEFCMMTHRSL-EFCETRSGGEDHCPRFTCTIKISKKVVAEADGASKKLARYAA 150 Query: 216 AAEVL 220 A L Sbjct: 151 CASAL 155 >gi|46110176|ref|XP_382146.1| hypothetical protein FG01970.1 [Gibberella zeae PH-1] Length = 383 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 5/134 (3%) Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 D I + + V++++ ++Y G + A FV + R + Sbjct: 215 DFGDVIEEPKTGEDGYKYYQHEAHSSFVQAVVGSIYTHAGQDAARDFVKSHVLSRQVDVS 274 Query: 152 KFRRDAK---TELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCS 207 + K EL + P ++ +G P F V + S +G S Sbjct: 275 AMFQ-FKLPTRELALLCAREGFEAPIARLESETGRHSRTPVFIVGIYSSSEKLGEGAGAS 333 Query: 208 KRAAEQVAAAEVLK 221 A A+ LK Sbjct: 334 LDLARWKASMNALK 347 Score = 42.0 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 22/70 (31%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L + L S + + L FLG + + + + + + E Sbjct: 89 LARTLIVPSADQNPSYNNSNLAFLGSTFINYHVLEYIVCKWPRLPMPIVYEVLRAFAGKE 148 Query: 83 TCSQVARELD 92 + Q+AR Sbjct: 149 SLHQIARRWG 158 >gi|324518074|gb|ADY46997.1| Protein SON [Ascaris suum] gi|324540941|gb|ADY49607.1| Protein SON [Ascaris suum] Length = 140 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 6/82 (7%) Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMD 205 + + + L E K P++ SGP ++ RFT ++G+ Sbjct: 54 VVSMEVAGKHPVSMLMELCSKKHWPPPQFTCI-ESGPSNNRRFTWKAVVNGVEYEPIASS 112 Query: 206 CSKR--AAEQVAAAEVLKREGI 225 SK+ A QV A VL+ G+ Sbjct: 113 ASKKTGKA-QVCA-VVLQSLGL 132 >gi|116283679|gb|AAH33911.1| Dhx9 protein [Mus musculus] Length = 198 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V + G A GM S K+ A+ Sbjct: 3 DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 >gi|3650397|emb|CAA77038.1| maleless protein [Sciara ocellaris] Length = 1252 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K+ W K V P+++ + +GP H RF + ++G G S K+ AE+ Sbjct: 3 DIKSFFHSWC-NKTKVEPQFE-SRPTGPKHRQRFLCELRVAGFNY-VGAGNSTVKKDAEK 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 >gi|218675756|gb|AAI69284.2| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [synthetic construct] Length = 413 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V + G A GM S K+ A+ Sbjct: 3 DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 182 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 239 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 240 AAQSCALSLVRQL 252 >gi|189236875|ref|XP_974662.2| PREDICTED: similar to adenosine deaminase [Tribolium castaneum] Length = 622 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +Y + ++GPDH P F + +++ G+ SK A +VL+ Sbjct: 190 KYTLVEKTGPDHKPTFKMAAKVNEKTYF-GLGGSKAKARMNVVEQVLENL 238 >gi|302653505|ref|XP_003018578.1| RNAse III, putative [Trichophyton verrucosum HKI 0517] gi|291182232|gb|EFE37933.1| RNAse III, putative [Trichophyton verrucosum HKI 0517] Length = 160 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 6/127 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 R +E + Y F ++++ AL S + L +G ++ L + T ++ Sbjct: 15 RTKAMEDLLEYRFKDKTIALSALNLPGRLTSI-KDNTGLAQVGKAVMELFLITDGYDK-- 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 ++ ++ + + + L + +R + A V++L+ Sbjct: 72 DMDPENINTLLTFVLDNSKLADIGTKKGLGRCMM---GMRSSTANLTPLYTARTVQALMG 128 Query: 125 ALYLDGG 131 A+YLD Sbjct: 129 AVYLDSD 135 >gi|62637420|ref|YP_227418.1| DsRNA binding PKR inhibitor [Deerpox virus W-848-83] gi|115503280|gb|ABI99198.1| DsRNA binding PKR inhibitor [Deerpox virus W-848-83] Length = 199 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ + L E+ + SGP H P FT + ISG+ + +K+ A+ Sbjct: 124 DKNPCSILNEYCQYTSRD--WFIDIISSGPIHKPLFTATLCISGVKFRSAIGSTKKEAKT 181 Query: 214 VAAAEVL 220 A + Sbjct: 182 NATKMAM 188 >gi|119631442|gb|EAX11037.1| protein kinase, interferon-inducible double stranded RNA dependent activator, isoform CRA_d [Homo sapiens] Length = 105 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 KT +Q E+ + P Y+ H P FT V + + G SK+ A+ Sbjct: 33 KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90 Query: 215 AAAEVLK 221 AA + Sbjct: 91 AAEAAIN 97 >gi|195119908|ref|XP_002004471.1| GI19596 [Drosophila mojavensis] gi|193909539|gb|EDW08406.1| GI19596 [Drosophila mojavensis] Length = 1351 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213 D K+ L + AK P+++V GP H RF V + A G +K+ AE+ Sbjct: 1 MDIKSFLFSYC-AKNQTEPKFEVRPI-GPKHRQRFLCEVRVDQCPYVAVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A+ + Sbjct: 59 NASRD 63 Score = 38.5 bits (89), Expect = 0.76, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210 +AK L + + +YK T GPDH F + I A+ +K++ Sbjct: 164 NAKDRLNIYKQSNNIKD-DYKYTPV-GPDHARSFMAELSIYVPALKRKVTARETGSNKKS 221 Query: 211 AEQVAAAEVLKRE 223 A + A ++++ Sbjct: 222 ASKSCALSLVRQL 234 >gi|195027549|ref|XP_001986645.1| GH20409 [Drosophila grimshawi] gi|193902645|gb|EDW01512.1| GH20409 [Drosophila grimshawi] Length = 1335 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213 D K+ L + AK P+++V +GP H RF V + + A G +K+ AE+ Sbjct: 1 MDIKSFLFSYC-AKNQTEPKFEV-RPTGPKHRQRFLCEVRVDLCSYVAVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A+ + Sbjct: 59 NASRD 63 >gi|82469828|gb|ABB77172.1| R2D2 [Drosophila melanogaster] gi|82469832|gb|ABB77174.1| R2D2 [Drosophila melanogaster] Length = 311 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + LQE+ P Y P D + VE+ + A G SKR A+ Sbjct: 3 NKSAVSALQEFCARTQINLPTYSFI----PGEDGGYVCKVELLEIE-ALGNGRSKRDAKH 57 Query: 214 VAAAEVLKR 222 +AA+ +L++ Sbjct: 58 LAASNILRK 66 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207 + RD EL+++ + P +V +SG P F ++ + S Sbjct: 88 ELTNLNRDMVKELRDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 144 Query: 208 -KRAAEQVAAAEVL 220 K+ A Q AA E+L Sbjct: 145 KKKDARQRAAIEML 158 >gi|332230603|ref|XP_003264483.1| PREDICTED: ATP-dependent RNA helicase A isoform 1 [Nomascus leucogenys] Length = 1270 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V++ G GM S K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 238 AAQSCALSLVRQL 250 >gi|296229581|ref|XP_002760333.1| PREDICTED: ATP-dependent RNA helicase A isoform 1 [Callithrix jacchus] gi|296229583|ref|XP_002760334.1| PREDICTED: ATP-dependent RNA helicase A isoform 2 [Callithrix jacchus] Length = 1270 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V++ G GM S K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 238 AAQSCALSLVRQL 250 >gi|119611543|gb|EAW91137.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, isoform CRA_a [Homo sapiens] Length = 1014 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V++ G GM S K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 238 AAQSCALSLVRQL 250 >gi|116283708|gb|AAH25245.1| DHX9 protein [Homo sapiens] Length = 593 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V++ G GM S K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 238 AAQSCALSLVRQL 250 >gi|109019118|ref|XP_001114405.1| PREDICTED: ATP-dependent RNA helicase A isoform 2 [Macaca mulatta] gi|297281300|ref|XP_002802074.1| PREDICTED: ATP-dependent RNA helicase A [Macaca mulatta] Length = 1275 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V++ G GM S K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 238 AAQSCALSLVRQL 250 >gi|33878473|gb|AAH14246.1| DHX9 protein [Homo sapiens] Length = 599 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V++ G GM S K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 238 AAQSCALSLVRQL 250 >gi|62020087|gb|AAH08773.1| DHX9 protein [Homo sapiens] Length = 596 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V++ G GM S K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 238 AAQSCALSLVRQL 250 >gi|297662534|ref|XP_002809755.1| PREDICTED: ATP-dependent RNA helicase A-like [Pongo abelii] gi|71153339|sp|Q5R874|DHX9_PONAB RecName: Full=ATP-dependent RNA helicase A; AltName: Full=DEAH box protein 9; AltName: Full=Nuclear DNA helicase II; Short=NDH II gi|55730630|emb|CAH92036.1| hypothetical protein [Pongo abelii] Length = 1269 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V++ G GM S K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 238 AAQSCALSLVRQL 250 >gi|100913206|ref|NP_001348.2| ATP-dependent RNA helicase A [Homo sapiens] gi|332811349|ref|XP_003308679.1| PREDICTED: ATP-dependent RNA helicase A isoform 1 [Pan troglodytes] gi|116241330|sp|Q08211|DHX9_HUMAN RecName: Full=ATP-dependent RNA helicase A; AltName: Full=DEAH box protein 9; AltName: Full=Nuclear DNA helicase II; Short=NDH II gi|55662450|emb|CAH71701.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapiens] gi|56206329|emb|CAI19277.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapiens] gi|119611544|gb|EAW91138.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, isoform CRA_b [Homo sapiens] gi|187952519|gb|AAI37137.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapiens] gi|255652739|dbj|BAH90798.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [synthetic construct] Length = 1270 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V++ G GM S K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 238 AAQSCALSLVRQL 250 >gi|1082769|pir||A47363 RNA helicase A - human Length = 1279 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V++ G GM S K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 180 NAKARLIQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 238 AAQSCALSLVRQL 250 >gi|1806048|emb|CAA71668.1| nuclear DNA helicase II [Homo sapiens] Length = 1270 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V++ G GM S K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 238 AAQSCALSLVRQL 250 >gi|255722171|ref|XP_002546020.1| predicted protein [Candida tropicalis MYA-3404] gi|240136509|gb|EER36062.1| predicted protein [Candida tropicalis MYA-3404] Length = 709 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + AK PEY V + D + F V+I + G +K+ A AA L Sbjct: 636 ISQAKIMP-PEYNVHELTPLSQDRKLFYATVQIGDVYLGAGYGSTKKEARHKAAMCALNN 694 >gi|322819389|gb|EFZ26529.1| hypothetical protein TCSYLVIO_7294 [Trypanosoma cruzi] Length = 220 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 27/168 (16%) Query: 7 STLEKRIGYAF-----ANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLL 59 S L +R+ F + L +A + S S + + +G+ +L + L+ Sbjct: 52 SELSRRLQKQFPEIKRQHHVLYLRAFINPSFTTSDAMNSTMNATTSIGEALLASVGECLI 111 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSI---- 114 N F K E+ + + L+S T S V R ++ + + ++ + S Sbjct: 112 VNAFRDLKRDEVLLLMSFLLSDATLSSVLRYHWEMEDMVLTDASVQLFQGKTLRSTAGLM 171 Query: 115 ---------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147 A V+S+I A+YLD G+E A F+ K+ Q Sbjct: 172 QWLSSSGKQQTPDPYCAGCVKSMIGAVYLDRGLEEAAAFIYKHVLQNI 219 >gi|156373222|ref|XP_001629432.1| predicted protein [Nematostella vectensis] gi|156216432|gb|EDO37369.1| predicted protein [Nematostella vectensis] Length = 313 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L E A K T ++ + FT V I A G +K+ A++ A Sbjct: 98 NPISILTESAQ-KSKKTINFQELQST-----NLFTCAVIIQDKLVATGEASNKKDAKRNA 151 Query: 216 AAEVL 220 A L Sbjct: 152 AENAL 156 >gi|2961456|gb|AAC05725.1| RNA helicase A [Mus musculus] Length = 1380 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V + G +GM S K+ A+ Sbjct: 3 DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNY-RGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 41.2 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L + + + EYK T GPDH+ F + I + + C+K+ Sbjct: 182 NAKARLNHYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGCNKKL 239 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 240 AAQSCALSLVRQL 252 >gi|293335783|ref|NP_001169831.1| hypothetical protein LOC100383723 [Zea mays] gi|224031877|gb|ACN35014.1| unknown [Zea mays] Length = 310 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 20/36 (55%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ V I G +G+ ++R A++ AA L+ Sbjct: 96 QFSIEVWIVGEKVGEGIGRTRREAQRQAAEMSLRNL 131 >gi|316954971|gb|EFV46417.1| conserved hypothetical protein [Trichinella spiralis] Length = 180 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK----FRRDA-K--TELQ 162 + S+ + + S++ A+ DG AG FV + + + + ++ K T L Sbjct: 4 YNNSLMSSSLRSIVGAILFDGNEAEAGYFVQDFVLTQLINVDINELWYFKEPLKILTALL 63 Query: 163 EWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 E TPE ++ SG P + V + + S A ++AA + LK Sbjct: 64 E---KNDRGTPEPRILRSSGEFTVTPVYVVGIYCDKKLIGESAGESVLIATEMAARDCLK 120 Query: 222 RE 223 Sbjct: 121 NL 122 >gi|82469838|gb|ABB77177.1| R2D2 [Drosophila melanogaster] Length = 311 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + LQE+ P Y P D + VE+ + A G SKR A+ Sbjct: 3 NKSAVSALQEFCARTQINLPTYSFI----PGEDGGYVCKVELLEIE-ALGNGRSKRDAKH 57 Query: 214 VAAAEVLKR 222 +AA+ +L++ Sbjct: 58 LAASNILRK 66 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207 + RD EL+++ + P +V +SG P F ++ + S Sbjct: 88 ELTNLNRDMVKELRDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 144 Query: 208 -KRAAEQVAAAEVL 220 K+ A Q AA E+L Sbjct: 145 KKKDARQRAAIEML 158 >gi|90078150|dbj|BAE88755.1| unnamed protein product [Macaca fascicularis] Length = 272 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + G F + V++ G A+G +K+ A++ AA +L+ G Sbjct: 2 LLTERGLPRRREFVMQVKV-GNHTAEGAGTNKKVAKRNAAENMLEILG 48 >gi|170574690|ref|XP_001892920.1| hypothetical protein, conserved [Brugia malayi] gi|158601296|gb|EDP38248.1| hypothetical protein, conserved [Brugia malayi] Length = 863 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 21/41 (51%) Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P+ P F + I+G +G+ SK+ A+ AA + L + Sbjct: 458 PNKPPMFKCTLTINGTHKFEGIGQSKKTAKSAAAEQALTKL 498 >gi|324502539|gb|ADY41117.1| Protein SON [Ascaris suum] Length = 1051 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 6/82 (7%) Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMD 205 + + + L E K P++ SGP ++ RFT ++G+ Sbjct: 965 VVSMEVAGKHPVSMLMELCSKKHWPPPQFTCI-ESGPSNNRRFTWKAVVNGVEYEPIASS 1023 Query: 206 CSKR--AAEQVAAAEVLKREGI 225 SK+ A QV A VL+ G+ Sbjct: 1024 ASKKTGKA-QVCA-VVLQSLGL 1043 >gi|24582609|ref|NP_609152.1| r2d2, isoform A [Drosophila melanogaster] gi|281364575|ref|NP_001162903.1| r2d2, isoform B [Drosophila melanogaster] gi|7297298|gb|AAF52561.1| r2d2, isoform A [Drosophila melanogaster] gi|48958433|gb|AAT47770.1| LD06392p [Drosophila melanogaster] gi|82469830|gb|ABB77173.1| R2D2 [Drosophila melanogaster] gi|272406933|gb|ACZ94194.1| r2d2, isoform B [Drosophila melanogaster] Length = 311 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + LQE+ P Y P D + VE+ + A G SKR A+ Sbjct: 3 NKSAVSALQEFCARTQINLPTYSFI----PGEDGGYVCKVELLEIE-ALGNGRSKRDAKH 57 Query: 214 VAAAEVLKR 222 +AA+ +L++ Sbjct: 58 LAASNILRK 66 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207 + RD EL+++ + P +V +SG P F ++ + S Sbjct: 88 ELTNLNRDMVKELRDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 144 Query: 208 -KRAAEQVAAAEVL 220 K+ A Q AA E+L Sbjct: 145 KKKDARQRAAIEML 158 >gi|326533226|dbj|BAJ93585.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 932 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 20/36 (55%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ V I G +G+ +++ A++ AA L+ Sbjct: 718 QFSIEVWIVGEKVGEGIGSTRKEAQRQAAEISLRNL 753 >gi|115534938|ref|NP_508195.2| hypothetical protein F55A4.4 [Caenorhabditis elegans] gi|90568094|gb|AAB07562.2| Hypothetical protein F55A4.4 [Caenorhabditis elegans] Length = 284 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + +L E+A + P ++ F + +G SK +++ A Sbjct: 143 NPVAQLNEYAQKFYKKYPTFEFVKEQAVGKHREFVIQATFENKTL-EGRGPSKIISKRAA 201 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 202 AEAILESIG 210 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV---VEISGLAPAQ--GMDCSKRAAEQ 213 + + E A + + ++V G H+ ++ V V + A+ G +K++A+Q Sbjct: 46 SIIHEKAQ-QLKLKINFEVLEEGGDQHNRQYAVRYTLVADDNVVKAKAMGKGKNKKSAQQ 104 Query: 214 VAAAEVL 220 A ++L Sbjct: 105 EACTQLL 111 >gi|224072687|ref|XP_002303835.1| predicted protein [Populus trichocarpa] gi|222841267|gb|EEE78814.1| predicted protein [Populus trichocarpa] Length = 166 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPA--QGM 204 SG + AK++L E A P ++ GP H FT V + I G A + Sbjct: 70 DSGGPKISAKSQLLETLAANKWKPPLFECFKEEGPCHKKLFTYKVAIRIEGEASTVLECF 129 Query: 205 DC---SKRAAEQVAAAEV---LKREGIW 226 +K+ A + AA LK G + Sbjct: 130 GYPKPTKKTAAEHAAEGALWYLKHLGYF 157 >gi|308198210|ref|XP_001387150.2| predicted protein [Scheffersomyces stipitis CBS 6054] gi|149389085|gb|EAZ63127.2| predicted protein [Pichia stipitis CBS 6054] Length = 217 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 22/164 (13%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + L + LTH S + + E+L +G +IL L + + S E ++ + + Sbjct: 62 DDDLALQVLTHKSFGNGIKPYNEKLSAMGSKILNLYFAKFVVEK-PSQNELAINGKNLDV 120 Query: 79 VSAETCSQVARELDLASFIR--------------VSSDLRKDVCSFMTSIQADVVESLIA 124 + ++A L L F R + A ++ +L+ Sbjct: 121 LGTPIAKELAGRLSLGIFARTNNLNSTMFWKSYNYGVGFETSG---EMKVSAQMMYALVG 177 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 A+ G +VA F+ ++ L + D + + E A Sbjct: 178 AVTFVHGKKVAEQFI----SEKLLGASPSIEDITSSVVEKAQQN 217 >gi|134075874|emb|CAL00253.1| unnamed protein product [Aspergillus niger] Length = 339 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 26/145 (17%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN-------------------HFDS 65 A+TH S + +RL FLG RI+ L S L + Sbjct: 108 LAVTHKSFDQGRRGFNDRLAFLGKRIVQLQASLALVQSPSNAANSATPDAYGRVPFTHPA 167 Query: 66 AKEGELSV--RFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESL 122 + + L S S++A + D+ +R S M + A + ++ Sbjct: 168 LDSLDNLDYNTKSFLTSKTKLSELAHKYDMQRVVRWCPRKPNNLESSGMDLVLAHTMYAV 227 Query: 123 IAALYLDGG----IEVAGTFVDKYW 143 I A+ L+ G +VA F +Y+ Sbjct: 228 IGAISLEKGNAVANKVARAFSRRYF 252 >gi|82469826|gb|ABB77171.1| R2D2 [Drosophila melanogaster] Length = 311 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + LQE+ P Y P D + VE+ + A G SKR A+ Sbjct: 3 NKSAVSALQEFCARTQINLPTYSFI----PGEDGGYVCKVELLEIE-ALGNGRSKRDAKH 57 Query: 214 VAAAEVLKR 222 +AA+ +L++ Sbjct: 58 LAASNILRK 66 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207 + RD EL+++ + P ++ +SG P F ++ + S Sbjct: 88 ELTNLNRDMVKELRDYCVRREMPLPSIEIVQQSGTPSAPEFVACCSVASIVR---YGKSD 144 Query: 208 -KRAAEQVAAAEVL 220 K+ A Q AA E+L Sbjct: 145 KKKDARQRAAIEML 158 >gi|33415073|gb|AAQ18044.1| double-stranded RNA-binding protein [Human orf virus] Length = 183 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + IS A SK+ A A Sbjct: 109 NPVSAVNEFCMMTRRPL-EFCETRSGGEDHCPRFTCTITISEKVVAAADGASKKLARHTA 167 Query: 216 AAEVL 220 + L Sbjct: 168 CSSAL 172 >gi|307197483|gb|EFN78717.1| Dosage compensation regulator [Harpegnathos saltator] Length = 1243 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K+ +W K P++ V +GP H RF + ISG G +K+ A+ Sbjct: 3 DIKSFFHQWC-GKNAKEPQFDV-RPTGPKHRQRFLCELRISGFDYVGAGNSTNKKDAQGN 60 Query: 215 AAAE 218 AA + Sbjct: 61 AAKD 64 >gi|242062442|ref|XP_002452510.1| hypothetical protein SORBIDRAFT_04g027200 [Sorghum bicolor] gi|241932341|gb|EES05486.1| hypothetical protein SORBIDRAFT_04g027200 [Sorghum bicolor] Length = 934 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ V I G +G+ ++R A+ AA L+ Sbjct: 721 QFSIEVWIVGEKVGEGIGRTRREAQHKAAEMSLRNL 756 >gi|242059289|ref|XP_002458790.1| hypothetical protein SORBIDRAFT_03g040355 [Sorghum bicolor] gi|241930765|gb|EES03910.1| hypothetical protein SORBIDRAFT_03g040355 [Sorghum bicolor] Length = 718 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 T LQE E++ T +G F+V V S G+ ++ A+ AA Sbjct: 508 YVTVLQEIGQ-LCDSKVEFRSTVSNGK--SMLFSVEVLFSNEKIGIGIGKTRDEAQVQAA 564 Query: 217 AEVLKRE 223 + L+ Sbjct: 565 EKALQNL 571 >gi|312086019|ref|XP_003144912.1| hypothetical protein LOAG_09336 [Loa loa] gi|307759924|gb|EFO19158.1| hypothetical protein LOAG_09336 [Loa loa] Length = 637 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 21/41 (51%) Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P+ P F + ++G +G+ SK+ A+ AA + L + Sbjct: 232 PNKPPMFKCTLTVNGTHKFEGIGQSKKTAKSAAAEQALTKL 272 >gi|159474642|ref|XP_001695434.1| double stranded RNA-binding protein [Chlamydomonas reinhardtii] gi|158275917|gb|EDP01692.1| double stranded RNA-binding protein [Chlamydomonas reinhardtii] Length = 1520 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 15/80 (18%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGP-----DHDPR---FTVVVEISGLAPAQGMDCS 207 + T+L E A +V P D + + V G +G D + Sbjct: 1053 NPVTKLNELAQRN-------RVKMEIAPPPGSKDGGRTPHGWAMAVIYDGKEIGRGADKT 1105 Query: 208 KRAAEQVAAAEVLKREGIWT 227 K+ A+++AA E L+ GI++ Sbjct: 1106 KKDAKRLAAIEALRHLGIYS 1125 >gi|66805219|ref|XP_636342.1| hypothetical protein DDB_G0289215 [Dictyostelium discoideum AX4] gi|60464715|gb|EAL62841.1| hypothetical protein DDB_G0289215 [Dictyostelium discoideum AX4] Length = 508 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 58/163 (35%), Gaps = 13/163 (7%) Query: 2 SALRYSTLEKRI-GYAFANRSLLEKALTHSSISHSYQESYERL---EFLGDR--ILGLLI 55 + +E G F + LL + S + ++ + + L ++ + I L++ Sbjct: 129 KNILIKKIENTFNGLKFNDNQLLSNSF---STAVTFSKDNKTLITGKYFAEASKIFPLVV 185 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI 114 LF + + + + +S + + L+L +I+ +S+ L + Sbjct: 186 CKYLFKRYPNVTNNYVIPINSFFISHVVIANTFQYLNLQGYIKKLSNKLPNQKYEQ---L 242 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 S I ++YLD G + + + ++ D Sbjct: 243 YYVTFMSFIGSVYLDQGESAIEDKILPLFTEYLDSLSQYEFDH 285 >gi|291415218|ref|XP_002723851.1| PREDICTED: ATP-dependent RNA helicase A [Oryctolagus cuniculus] Length = 1260 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V + G GM S K+ A+ Sbjct: 3 DVKDFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNY-TGMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 238 AAQSCALSLVRQL 250 >gi|242032197|ref|XP_002463493.1| hypothetical protein SORBIDRAFT_01g000740 [Sorghum bicolor] gi|241917347|gb|EER90491.1| hypothetical protein SORBIDRAFT_01g000740 [Sorghum bicolor] Length = 183 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/31 (45%), Positives = 20/31 (64%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY 36 + L+ R+GYAF SLL +A+TH+S S Sbjct: 41 LAALQSRVGYAFRAPSLLRRAMTHASYSREN 71 >gi|208690893|gb|ACI31222.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Saguinus labiatus] Length = 552 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 L K +T Y+ + +GP+ F ++ G +K+ A+Q+AA Sbjct: 104 LINRIAQKERLTVNYEQCASGVNGPEG---FHYKCKVGQKEYGIGTGSTKQEAKQLAAKL 160 Query: 219 V 219 Sbjct: 161 A 161 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 EL ++ + V YK SGP HD RFT V I G + S Sbjct: 13 ELNKYRQKQGVVL-RYKELPNSGPPHDRRFTFQVIIDGREFPEAEGRS 59 >gi|157129657|ref|XP_001655441.1| adenosine deaminase acting on RNA (adar)-2 [Aedes aegypti] gi|108882042|gb|EAT46267.1| adenosine deaminase acting on RNA (adar)-2 [Aedes aegypti] Length = 657 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 + Y + ++GP H P FT+ V + G G SK+ A Sbjct: 12 ELKRNLVYNMESQTGPVHAPLFTMSVVVDGQK-FMGHGRSKKLA 54 >gi|218189405|gb|EEC71832.1| hypothetical protein OsI_04490 [Oryza sativa Indica Group] Length = 745 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 9/68 (13%) Query: 159 TELQE---WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 T LQE ++ E++ T SG + +F+V V S G+ ++ A+ +A Sbjct: 528 TVLQEIGRLCESR----VEFRSTVSSGK--NMQFSVEVLFSNEKIGIGIGKTRDEAQVLA 581 Query: 216 AAEVLKRE 223 A + L+ Sbjct: 582 AEKALQNL 589 Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 19/44 (43%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 SG + + E+ G +G+ +K A+ AA E LK Sbjct: 673 VRDSGSALNGEYHFQAELGGQILGRGIGLNKDFAKLQAAEEALK 716 >gi|115441141|ref|NP_001044850.1| Os01g0857000 [Oryza sativa Japonica Group] gi|56784824|dbj|BAD82045.1| C-terminal domain phosphatase-like protein [Oryza sativa Japonica Group] gi|56785358|dbj|BAD82316.1| C-terminal domain phosphatase-like protein [Oryza sativa Japonica Group] gi|113534381|dbj|BAF06764.1| Os01g0857000 [Oryza sativa Japonica Group] gi|222619564|gb|EEE55696.1| hypothetical protein OsJ_04124 [Oryza sativa Japonica Group] Length = 756 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 9/68 (13%) Query: 159 TELQE---WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 T LQE ++ E++ T SG + +F+V V S G+ ++ A+ +A Sbjct: 528 TVLQEIGRLCESR----VEFRSTVSSGK--NMQFSVEVLFSNEKIGIGIGKTRDEAQVLA 581 Query: 216 AAEVLKRE 223 A + L+ Sbjct: 582 AEKALQNL 589 >gi|3021546|emb|CAA10953.1| OV20.0L [Orf virus] Length = 183 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH PRFT + ISG + SK+ A A Sbjct: 109 NPVSPVNEFCMMTRRSL-EFCETRSGGEDHCPRFTCTITISGKVVSVADGASKKLARHTA 167 Query: 216 AAEVL 220 + L Sbjct: 168 CSSAL 172 >gi|255628583|gb|ACU14636.1| unknown [Glycine max] Length = 162 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 1/44 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 K +LQ + P Y + GP H RF V + G Sbjct: 120 YKNQLQSYVQKNNLSLPVYS-SEWEGPPHAMRFKCKVTVDGTNL 162 >gi|50550997|ref|XP_502972.1| YALI0D18150p [Yarrowia lipolytica] gi|49648840|emb|CAG81164.1| YALI0D18150p [Yarrowia lipolytica] Length = 397 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 5/107 (4%) Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEY 175 V++L+AA++ + A F+D + RA+ F + K E+ + PE Sbjct: 262 VQALVAAIHAHVSRDEALKFIDNFILSRAVDVESLFSFNQPHK-EIVRVCAREGLERPEA 320 Query: 176 KVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++ +G P F V V +G S A+ A+ LK Sbjct: 321 RLMAETGRLSKAPVFVVGVFSGKHKLGEGQGASLAEAKIRASVNALK 367 >gi|12850774|dbj|BAB28848.1| unnamed protein product [Mus musculus] Length = 265 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y++ G + +F V + G A GM S K+ A+ Sbjct: 3 DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 42.4 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 183 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNGSFIAEMTIYIKQLGRRIFAREHGSNKKL 240 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 241 AAQSCALSLVRQL 253 >gi|317029357|ref|XP_001391402.2| RNase III domain protein [Aspergillus niger CBS 513.88] Length = 258 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 22/141 (15%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN-------------------HFDS 65 A+TH S + +RL FLG RI+ L S L + Sbjct: 108 LAVTHKSFDQGRRGFNDRLAFLGKRIVQLQASLALVQSPSNAANSATPDAYGRVPFTHPA 167 Query: 66 AKEGELSV--RFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESL 122 + + L S S++A + D+ +R S M + A + ++ Sbjct: 168 LDSLDNLDYNTKSFLTSKTKLSELAHKYDMQRVVRWCPRKPNNLESSGMDLVLAHTMYAV 227 Query: 123 IAALYLDGGIEVAGTFVDKYW 143 I A+ L+ G VA + Sbjct: 228 IGAISLEKGNAVANKVARERI 248 >gi|259490370|ref|NP_001159196.1| hypothetical protein LOC100304282 [Zea mays] gi|223942573|gb|ACN25370.1| unknown [Zea mays] Length = 286 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 20/36 (55%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ V I G +G+ ++R A++ AA L+ Sbjct: 72 QFSIEVWIVGEKFGEGIGRTRREAQRQAAEMSLRNL 107 >gi|9663121|emb|CAC01121.1| drbp76 alpha [Homo sapiens] Length = 245 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 72 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 123 >gi|9663124|emb|CAC01124.1| ILF3 [Homo sapiens] Length = 441 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 68 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 119 >gi|9663123|emb|CAC01123.1| drbp76 gamma [Homo sapiens] Length = 237 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 68 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 119 >gi|9663122|emb|CAC01122.1| drbp76 [Homo sapiens] Length = 249 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 68 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 119 >gi|302506567|ref|XP_003015240.1| RNAse III, putative [Arthroderma benhamiae CBS 112371] gi|291178812|gb|EFE34600.1| RNAse III, putative [Arthroderma benhamiae CBS 112371] Length = 160 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 6/127 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 R +E + Y F ++++ AL S + L +G ++ L + T ++ Sbjct: 15 RTKAMEDLLEYRFKDKTIALSALNLPGRLTSI-KDNTGLAQVGKAVMELFLITDGYDK-- 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + ++ + + + L + +R + A V++L+ Sbjct: 72 DMDPENIDTLLTFVLDNSKLADIGTKKGLGRCMM---GMRSSTANLTPLYTARTVQALMG 128 Query: 125 ALYLDGG 131 A+YLD Sbjct: 129 AVYLDSD 135 >gi|195471419|ref|XP_002088002.1| r2d2 [Drosophila yakuba] gi|82469854|gb|ABB77185.1| R2D2 [Drosophila yakuba] gi|82469858|gb|ABB77187.1| R2D2 [Drosophila yakuba] gi|82469862|gb|ABB77189.1| R2D2 [Drosophila yakuba] gi|82469864|gb|ABB77190.1| R2D2 [Drosophila yakuba] gi|82469868|gb|ABB77192.1| R2D2 [Drosophila yakuba] gi|194174103|gb|EDW87714.1| r2d2 [Drosophila yakuba] Length = 321 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KR 209 RD EL+++ P ++ +SG + P F ++ + S K+ Sbjct: 101 NLNRDMLRELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKK 157 Query: 210 AAEQVAAAEVL 220 A Q AA E+L Sbjct: 158 DARQRAAIEML 168 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + LQE+ P Y+ G D + V++ + A G SKR A+ Sbjct: 10 NKSAVSALQEFCAKTKNTPPLYEFID--GEDGG--YVCKVDMMEVE-AYGNGRSKRDAKH 64 Query: 214 VAAAEVLKR 222 +AA +L++ Sbjct: 65 LAAVNILRK 73 >gi|82469856|gb|ABB77186.1| R2D2 [Drosophila yakuba] gi|82469866|gb|ABB77191.1| R2D2 [Drosophila yakuba] Length = 321 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KR 209 RD EL+++ P ++ +SG + P F ++ + S K+ Sbjct: 101 NLNRDMLRELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKK 157 Query: 210 AAEQVAAAEVL 220 A Q AA E+L Sbjct: 158 DARQRAAIEML 168 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + LQE+ P Y+ G D + V++ + A G SKR A+ Sbjct: 10 NKSAVSALQEFCAKTKNTPPLYEFID--GEDGG--YVCKVDMMEVE-AYGNGRSKRDAKH 64 Query: 214 VAAAEVLKR 222 +AA +L++ Sbjct: 65 LAAVNILRK 73 >gi|82469860|gb|ABB77188.1| R2D2 [Drosophila yakuba] Length = 321 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KR 209 RD EL+++ P ++ +SG + P F ++ + S K+ Sbjct: 101 NLNRDMLRELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKK 157 Query: 210 AAEQVAAAEVL 220 A Q AA E+L Sbjct: 158 DARQRAAIEML 168 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + LQE+ P Y+ G D + V++ + A G SKR A+ Sbjct: 10 NKSAVSALQEFCAKTKNTPPLYEFID--GEDGG--YVCKVDMMEVE-AYGNGRSKRDAKH 64 Query: 214 VAAAEVLKR 222 +AA +L++ Sbjct: 65 LAAVNILRK 73 >gi|332227208|ref|XP_003262783.1| PREDICTED: interferon-induced, double-stranded RNA-activated protein kinase [Nomascus leucogenys] Length = 510 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +A K T Y+ V+ GP F ++ + G +K+ A+Q+AA Sbjct: 108 FAQKKRL-TVNYEQCVSGVHGP---KGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLA 161 Score = 42.0 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 17/41 (41%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV Y+ SGP HD RFT V I + S Sbjct: 19 QKQGVVLRYQELPNSGPPHDRRFTFRVIIDEREFPEAEGRS 59 >gi|170052150|ref|XP_001862091.1| ribonuclease iii [Culex quinquefasciatus] gi|167873116|gb|EDS36499.1| ribonuclease iii [Culex quinquefasciatus] Length = 135 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L++ +SLV+ + + +L + S+ S T +AD++E+ + ALY+D Sbjct: 59 LTLLRSSLVNNRNQAVICDDLGMTSYAVYS----NKKADLKTKDRADLLETFLGALYVDK 114 Query: 131 GIEVAGT 137 G+ A Sbjct: 115 GLNTAKR 121 >gi|242209154|ref|XP_002470425.1| predicted protein [Postia placenta Mad-698-R] gi|220730458|gb|EED84314.1| predicted protein [Postia placenta Mad-698-R] Length = 1379 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTFRSGPDHDPRFTV 191 E+A +F + + + D + +L + + G ++V ++SGP H P +T Sbjct: 1281 EMAESFRTLLHNVQNDSAAEIHSDWRMQLNNYLQSNGGSRSLTWEV-YQSGPQHQPSWTA 1339 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V I G+ + S+ A ++ AA + L Sbjct: 1340 VAYIRGIEYGKSTGTSQGAVKEEAARQTL 1368 >gi|76157448|gb|ABA40474.1| SJCHGC03811 protein [Schistosoma japonicum] Length = 132 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-----GMDCSKRAAEQVAAAEVLK 221 +GP HD F V V IS + G S + A+++AA L+ Sbjct: 33 KENGPYHDKVFHVNVVISHKSLNISETYFGTGSSIKKAKRMAADTALQ 80 >gi|17506341|ref|NP_491200.1| hypothetical protein D1037.1 [Caenorhabditis elegans] gi|13384432|gb|AAK21366.1| Hypothetical protein D1037.1 [Caenorhabditis elegans] Length = 786 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 8/86 (9%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---- 200 Q + ++ + + E + P + SG DH F + I+ + Sbjct: 695 QNNVPVDLSNKNPISLIMELCAKRRWNPPSFSC-EESGADHLKMFVWTIVINDVEYRPMC 753 Query: 201 AQGMDCSKRAAEQVAAAEVLKREGIW 226 K+ + VAA L+ G+ Sbjct: 754 GS---KQKKEGKAVAAQVALQSLGVL 776 >gi|208690879|gb|ACI31215.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Nomascus leucogenys] Length = 551 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +A K T Y+ V+ GP F ++ + G +K+ A+Q+AA Sbjct: 108 FAQKKRL-TVNYEQCVSGVHGP---KGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLA 161 Score = 41.6 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 17/41 (41%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV Y+ SGP HD RFT V I + S Sbjct: 19 QKQGVVLRYQELPNSGPPHDRRFTFRVIIDEREFPEAEGRS 59 >gi|158296416|ref|XP_316826.3| AGAP000856-PA [Anopheles gambiae str. PEST] gi|157015286|gb|EAA12065.3| AGAP000856-PA [Anopheles gambiae str. PEST] Length = 469 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 10/74 (13%) Query: 157 AKTELQEWAHAKFGVTP--EYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQ 213 K++L + HA P +Y+V + D F + G + +KR AEQ Sbjct: 391 PKSKL--YLHAVRNGLPRAQYEVQQK-----DKLFRATIRFDGQRYTSSFWEKNKRYAEQ 443 Query: 214 VAAAEVLKREGIWT 227 AA L + G+ + Sbjct: 444 AAALVCLLKRGVES 457 >gi|213495740|gb|ACJ49090.1| double-stranded RNA activated protein kinase [Mustela putorius furo] Length = 78 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 1/54 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K P Y+ H P FT V + + G SK+ A+ AA + Sbjct: 5 KTKNIPVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAIN 57 >gi|163860196|gb|ABY41266.1| interferon-resistance protein [Orf virus] Length = 183 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH P FT + ISG A SK+ A A Sbjct: 109 NPVSAVNEFCMMTHRSL-EFCETRSGGKDHCPLFTCTITISGKVVAAADGASKKLARHTA 167 Query: 216 AAEVL 220 A L Sbjct: 168 CASAL 172 >gi|163860194|gb|ABY41265.1| interferon-resistance protein [Orf virus] gi|197344481|gb|ACH69627.1| interferon-resistance protein [Orf virus] Length = 183 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH P FT + ISG A SK+ A A Sbjct: 109 NPVSAVNEFCMMTHRSL-EFCETRSGGKDHCPLFTCTITISGKVVAAADGASKKLARHTA 167 Query: 216 AAEVL 220 A L Sbjct: 168 CASAL 172 >gi|41057083|ref|NP_957797.1| ORF020 dsRNA-binding PKR inhibitor [Orf virus] gi|41018640|gb|AAR98245.1| ORF020 dsRNA-binding PKR inhibitor [Orf virus] Length = 183 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH P FT + ISG A SK+ A A Sbjct: 109 NPVSAVNEFCMMTHRSL-EFCETRSGGKDHCPLFTCTITISGKVVAAADGASKKLARHTA 167 Query: 216 AAEVL 220 A L Sbjct: 168 CASAL 172 >gi|208690897|gb|ACI31224.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Lagothrix lagotricha] Length = 552 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K EL ++ + V Y SGP HD RFT V I G + S Sbjct: 10 FKEELNKYRQKQGVVL-TYIELPNSGPPHDRRFTFQVIIDGREFPEAEGRS 59 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 L K +T Y+ + +GP+ F ++ G +K+ A+Q+AA Sbjct: 104 LINRIAQKKRLTVNYEPCASGLNGPEG---FHYKCKVGQKEYGIGTGSTKQEAKQLAAKL 160 Query: 219 V 219 Sbjct: 161 A 161 >gi|158341356|ref|YP_001522521.1| double-stranded RNA binding domain-containing protein [Acaryochloris marina MBIC11017] gi|158311597|gb|ABW33207.1| double-stranded RNA binding motif domain protein [Acaryochloris marina MBIC11017] Length = 148 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 6/79 (7%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 ++ + + + +LQE + P Y + R P+ F+ V+ GL G Sbjct: 71 EKPISQGDDWVENPIGQLQELCQKQQITLPRYGFSER--PNG---FSCNVQAMGLQE-NG 124 Query: 204 MDCSKRAAEQVAAAEVLKR 222 SK+ A+ AA E+L + Sbjct: 125 EGSSKQEAKTKAARELLSK 143 >gi|82469824|gb|ABB77170.1| R2D2 [Drosophila melanogaster] Length = 311 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + LQE+ P Y P D + VE+ + A G SKR A+ Sbjct: 3 NKSAVSALQEFCARTQINIPTYSFI----PGEDGGYVCKVELLEIE-ALGNGRSKRDAKH 57 Query: 214 VAAAEVLKR 222 +AA+ +L++ Sbjct: 58 LAASNILRK 66 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207 + RD EL+++ + P ++ +SG P F ++ + S Sbjct: 88 ELTNLNRDMVKELRDYCVRREMPLPCIEIVQQSGTPSAPEFVACCSVASIVR---YGKSD 144 Query: 208 -KRAAEQVAAAEVL 220 K+ A Q AA E+L Sbjct: 145 KKKDARQRAAIEML 158 >gi|322786687|gb|EFZ13071.1| hypothetical protein SINV_16272 [Solenopsis invicta] Length = 86 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 42 RLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101 RLE L D L ++ L+N F EG L+ ++S + +++ R+ + Sbjct: 6 RLEILDDSYLKFIVLLYLYNRFPMYNEGRLTALKGKIISNWNLYYCGNKKNISG--RIKN 63 Query: 102 DLRKDVCSFMTSIQAD 117 D + +F+ S+ + Sbjct: 64 DAFVPMSNFIPSLLPE 79 >gi|225424116|ref|XP_002280133.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1195 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD--- 205 +SG ++K++LQ P YK + +F VE +G+ M Sbjct: 1099 ESGPGGDNSKSQLQTLLTRAGYAAPTYKTKQLK----NNQFRSTVEFNGMQI---MGQPC 1151 Query: 206 CSKRAAEQVAAAEVLK 221 +K+ AE+ AAAE L+ Sbjct: 1152 NNKKFAEKDAAAEALQ 1167 >gi|301775697|ref|XP_002923269.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Ailuropoda melanoleuca] Length = 122 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 4/66 (6%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219 L EW + P Y R D F VV ++ + D SK+ AEQ AA Sbjct: 3 LLEWCRKEKLAQPVYDTVQR---PLDRLFCSVVTVAEQKYQSTLWDKSKKLAEQAAAIVC 59 Query: 220 LKREGI 225 L+ G+ Sbjct: 60 LRSRGL 65 >gi|297737748|emb|CBI26949.3| unnamed protein product [Vitis vinifera] Length = 1181 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD--- 205 +SG ++K++LQ P YK + +F VE +G+ M Sbjct: 1085 ESGPGGDNSKSQLQTLLTRAGYAAPTYKTKQLK----NNQFRSTVEFNGMQI---MGQPC 1137 Query: 206 CSKRAAEQVAAAEVLK 221 +K+ AE+ AAAE L+ Sbjct: 1138 NNKKFAEKDAAAEALQ 1153 >gi|255570705|ref|XP_002526307.1| ATP-dependent RNA helicase, putative [Ricinus communis] gi|223534388|gb|EEF36096.1| ATP-dependent RNA helicase, putative [Ricinus communis] Length = 1172 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 10/76 (13%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD--- 205 +SG ++K++LQ P YK + +F VE +G+ M Sbjct: 1076 ESGPGGDNSKSQLQTLITRAGYAAPTYKTKQLK----NSQFRSTVEFNGMQI---MGQPC 1128 Query: 206 CSKRAAEQVAAAEVLK 221 +K++AE+ AAAE L+ Sbjct: 1129 NNKKSAEKDAAAEALR 1144 >gi|170029002|ref|XP_001842383.1| ribonuclease iii [Culex quinquefasciatus] gi|167879433|gb|EDS42816.1| ribonuclease iii [Culex quinquefasciatus] Length = 192 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 43/160 (26%), Gaps = 54/160 (33%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +EG L+ ++V + + +A++L L F+ + + Sbjct: 28 QFPDLEEGGLATYRAAIVQNQHLAVLAKKLYLEKFMLYAHES------------------ 69 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 ++ ++ P KV + Sbjct: 70 -----------DLCHELELRHALPDI-------------------------PICKVIECN 93 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P + + G A S + AE AA + L+ Sbjct: 94 SPTSTRVYMMADYFRGKRLACSNGHSTQQAEMNAAKQALE 133 >gi|195385930|ref|XP_002051657.1| GJ11132 [Drosophila virilis] gi|194148114|gb|EDW63812.1| GJ11132 [Drosophila virilis] Length = 318 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 + LQE P Y+ G D + V + + A G SKR A+ +AA Sbjct: 8 SALQECCAQAKTGNPVYEYID--GEDGG--YVCKVVLIDIE-AYGNGRSKRDAKHLAAGN 62 Query: 219 VLKRE 223 ++++ Sbjct: 63 LMRKM 67 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217 EL+++ P ++ +SG + P F ++ + S K+ A Q AA Sbjct: 107 ELRDYCVRHDMPLPIIEIVQQSGSPNAPEFVACCSVASIKR---YGKSDKKKDARQRAAI 163 Query: 218 EVL 220 E+L Sbjct: 164 EML 166 >gi|321466884|gb|EFX77877.1| hypothetical protein DAPPUDRAFT_321006 [Daphnia pulex] Length = 131 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-----PAQGMDCSKRAAEQVAAAEVLKR 222 + PEY +T SGP H F V +++ ++ P + S + A+ AA LK+ Sbjct: 26 HHEIQPEYCLTEESGPVHQKTFVVNLKLGKISFKKQFPIVQVAQSTKKAQHAAAVLALKK 85 >gi|158341043|ref|YP_001522210.1| exoribonuclease II [Acaryochloris marina MBIC11017] gi|158311284|gb|ABW32896.1| exoribonuclease II [Acaryochloris marina MBIC11017] Length = 623 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 8/68 (11%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVA 215 + L E E+++ H+ + + + + G+ SK+ A+ A Sbjct: 547 SLLMEICQGFQWPQAEFEIVE-----HEQGYHCECRLKVDNEVITGSGIASSKKTAKHRA 601 Query: 216 AAEVLKRE 223 A V+++ Sbjct: 602 ARPVVEQL 609 >gi|281341947|gb|EFB17531.1| hypothetical protein PANDA_002815 [Ailuropoda melanoleuca] Length = 371 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 160 ELQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L A + + Y+ GP+ RF +I A G +K+ A+Q+AA Sbjct: 27 RLNRLAQKEKL-SVNYEQCELKEYGPE---RFYYRCKIGQKEYAVGGGATKQDAKQMAAK 82 Query: 218 EVLKR 222 + Sbjct: 83 FAYDQ 87 >gi|67538476|ref|XP_663012.1| hypothetical protein AN5408.2 [Aspergillus nidulans FGSC A4] gi|40743378|gb|EAA62568.1| predicted protein [Aspergillus nidulans FGSC A4] gi|259485147|tpe|CBF81959.1| TPA: RNAse III, putative (AFU_orthologue; AFUA_3G03050) [Aspergillus nidulans FGSC A4] Length = 146 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 7/129 (5%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ F N +LL AL +S +E + LG L L + Sbjct: 9 RLQYHFDLPFLNPALLSGALLAPGVS--TREGNKAFGLLGGTALQLYLQVEGLKR--EMN 64 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 ++S + + +Q +L + +IR + + A +E+++ A + Sbjct: 65 VEQISQAMSQVAGKRNLAQRGFDLGIDKWIRNNPS---QGSYISDKLMATTMEAIVGAYF 121 Query: 128 LDGGIEVAG 136 D G A Sbjct: 122 EDQGRTFAA 130 >gi|82469812|gb|ABB77164.1| R2D2 [Drosophila prostipennis] Length = 301 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217 EL+++ P ++ +SG + P F ++ + S K+ A Q AA Sbjct: 89 ELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDARQRAAI 145 Query: 218 EVL 220 E+L Sbjct: 146 EML 148 Score = 36.6 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + P Y G D + V + + + G SKR A+ +AAA +L++ Sbjct: 1 CAKSKNIPPTYDFID--GEDGG--YVCKVVLMEIE-SYGNGRSKRDAKHLAAANILRK 53 >gi|145530696|ref|XP_001451120.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124418764|emb|CAK83723.1| unnamed protein product [Paramecium tetraurelia] Length = 328 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 82/255 (32%), Gaps = 45/255 (17%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----------YERLEFLGDRILG 52 + LE F L KA+T + Y E L LG + Sbjct: 7 KQNFKVLE------FNYPELFNKAMTFKQYNQEYTARNKDNPLKQGINENLIELGSDLFD 60 Query: 53 LLISTLL-FNHFDSAKEGELS------VRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 F + + + + L++ + ++VA +L L + VS + + Sbjct: 61 FYFHDFFTFQDLPNKDQNTFTSYSDIRTQKQQLLTEKNLAEVAIQLGLKEKMLVSIN-QN 119 Query: 106 DVCSFMTSIQADVVESLIAALYLD--GGIEVAGTFVDKYWKQRALKSGK----------- 152 IQ+ +++LI A Y D + + + +K KS + Sbjct: 120 SDLKNNQKIQSQSLKALIGAQYFDKQKDLNLLRKLMQPIFKDLIKKSLEKTINVQNESLN 179 Query: 153 --FRRDAKTELQEWAHAKFGVTPEYKVTFRSG----PDHDPRFTVVVEISGLAPAQGMDC 206 + + K E ++ YK+ F+ + + + I+ + P + Sbjct: 180 LVKQENFKGEFIDFMDKH--PEYTYKLVFQESLNLFDKNRKIYQYELLINDVLPLKSTGE 237 Query: 207 SKRAAEQVAAAEVLK 221 K+A E + L+ Sbjct: 238 QKKAVEAQVFKDALQ 252 >gi|82469810|gb|ABB77163.1| R2D2 [Drosophila paralutea] Length = 306 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217 EL+++ P ++ +SG + P F ++ + S K+ A Q AA Sbjct: 94 ELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDARQRAAI 150 Query: 218 EVL 220 E+L Sbjct: 151 EML 153 >gi|308476926|ref|XP_003100678.1| CRE-ADR-1 protein [Caenorhabditis remanei] gi|308264696|gb|EFP08649.1| CRE-ADR-1 protein [Caenorhabditis remanei] Length = 1022 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 5/62 (8%) Query: 166 HAKFGVTPEYK----VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K Y+ V +G F I G SK+ A+ AA LK Sbjct: 594 QTKQRTKIAYEFKENVPQVAGSS-AQDFYCDCVIDENDRYTGSGRSKKIAKNAAAMMALK 652 Query: 222 RE 223 ++ Sbjct: 653 KK 654 >gi|255572781|ref|XP_002527323.1| double-stranded RNA binding protein, putative [Ricinus communis] gi|223533323|gb|EEF35075.1| double-stranded RNA binding protein, putative [Ricinus communis] Length = 219 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 20/85 (23%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS------------GLAPAQGM 204 AK++L E A P Y+ GP H FT V + G+ + Sbjct: 130 AKSQLHEICVANNWKPPLYECCKEEGPCHQRLFTFKVIVEMIGAEYIVLECYGIPKIK-- 187 Query: 205 DCSKRAAEQVAAAEV---LKREGIW 226 K+ A + AA LK G + Sbjct: 188 ---KKTAAEHAAEGALWYLKHLGYF 209 >gi|82469822|gb|ABB77169.1| R2D2 [Drosophila takahashii] Length = 304 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217 EL+++ P ++ +SG + P F ++ + S K+ A Q AA Sbjct: 92 ELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDARQRAAI 148 Query: 218 EVL 220 E+L Sbjct: 149 EML 151 Score = 43.9 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 QE+ P Y G D + V + + A G SKR A+ +AAA +L+ Sbjct: 1 QEFCAKSKNTPPTYDFID--GEDGG--YVCKVVLMEIE-AYGNGRSKRDAKHLAAANILR 55 Query: 222 R 222 + Sbjct: 56 K 56 >gi|156034801|ref|XP_001585819.1| hypothetical protein SS1G_13336 [Sclerotinia sclerotiorum 1980] gi|154698739|gb|EDN98477.1| hypothetical protein SS1G_13336 [Sclerotinia sclerotiorum 1980 UF-70] Length = 250 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 3/110 (2%) Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVT 172 A V+SLI A+YL G A TF+ ++ R L K + +L + Sbjct: 100 YASFVKSLIGAIYLHAGRAAAKTFIQQHILSRHLDISKLFQFSQPVRDLARLCAREDFEA 159 Query: 173 PEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P ++ +G P F V + + S A A+ LK Sbjct: 160 PVARILSETGRLSRSPVFVVGIYSGRDKLGEAPGASLDEARIRASVAGLK 209 >gi|147827068|emb|CAN66462.1| hypothetical protein VITISV_035844 [Vitis vinifera] Length = 1180 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD--- 205 +SG ++K++LQ P YK + +F VE +G+ M Sbjct: 1084 ESGPGGDNSKSQLQTLLTRAGYAAPTYKTKQLK----NNQFRSTVEFNGMQI---MGQPC 1136 Query: 206 CSKRAAEQVAAAEVLK 221 +K+ AE+ AAAE L+ Sbjct: 1137 NNKKFAEKDAAAEALQ 1152 >gi|91093789|ref|XP_967550.1| PREDICTED: similar to SON DNA-binding protein [Tribolium castaneum] Length = 626 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 22/47 (46%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E+A K P+Y + F GPDH F V ++G+ Sbjct: 552 NKHPVSLLGEYASKKKLGAPQYDLCFECGPDHKKNFLFKVTLNGVEY 598 >gi|159163361|pdb|1WHQ|A Chain A, Solution Structure Of The N-Terminal Dsrbd From Hypothetical Protein Bab28848 Length = 99 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVA 215 K L W K +TP Y++ G + +F V + G A GM S K+ A+ A Sbjct: 9 KNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNA 65 Query: 216 AAE 218 A + Sbjct: 66 ARD 68 >gi|148233852|ref|NP_001089264.1| hypothetical protein LOC734311 [Xenopus laevis] gi|58399163|gb|AAH89298.1| MGC85120 protein [Xenopus laevis] Length = 483 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 7/77 (9%) Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + K +A+ S + L + +YK+ +SGP H P F++ V++ Sbjct: 371 RRNLRKILDCKAIDSNQ----PMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFSMSVDV 424 Query: 196 SGLAPAQGMDCSKRAAE 212 G + SK+ A+ Sbjct: 425 DGTTH-EASGASKKTAK 440 >gi|19851824|gb|AAL99894.1| interferon resistance protein [goat proliferative dermatitis virus] Length = 183 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ E+ T G DH P FT + I G A SK+ A A Sbjct: 109 NPVSAVNEFCMMTHRSL-EFCETRSGGKDHCPLFTCTITIFGKVVAAADGASKKLARHTA 167 Query: 216 AAEVL 220 A L Sbjct: 168 CASAL 172 >gi|224057014|ref|XP_002191685.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Taeniopygia guttata] Length = 1284 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 3/67 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K L W + V P Y++ G F V + G G +K+ A+ Sbjct: 3 DVKNYLYAWC-GRRRVMPAYEIRAAGGR-GRQTFLCEVRVEGFNYVGMGNSTNKKDAQSN 60 Query: 215 AAAEVLK 221 AA + + Sbjct: 61 AARDFIN 67 Score = 42.4 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 7/82 (8%) Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-- 204 L G +AK L ++ + EYK T GPDH+ F + I + + Sbjct: 171 DLHGGWTLENAKARLNQFFQKEKIQE-EYKYT-EMGPDHNRSFNAEMNIYVRQLGRRIFS 228 Query: 205 ---DCSKRAAEQVAAAEVLKRE 223 +K+ A Q A ++++ Sbjct: 229 REHGSNKKLAAQACALSLVRQL 250 >gi|195580870|ref|XP_002080257.1| GD10344 [Drosophila simulans] gi|194192266|gb|EDX05842.1| GD10344 [Drosophila simulans] Length = 1298 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P+ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKLD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157382894|gb|ABV48882.1| maleless [Drosophila simulans] Length = 1298 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P+ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKLD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157382892|gb|ABV48881.1| maleless [Drosophila simulans] Length = 1298 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P+ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKLD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157382890|gb|ABV48880.1| maleless [Drosophila simulans] Length = 1298 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P+ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKLD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157382888|gb|ABV48879.1| maleless [Drosophila simulans] Length = 1298 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P+ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKLD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157382886|gb|ABV48878.1| maleless [Drosophila simulans] Length = 1298 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P+ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKLD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157382884|gb|ABV48877.1| maleless [Drosophila simulans] Length = 1298 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P+ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKLD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|157382882|gb|ABV48876.1| maleless [Drosophila simulans] Length = 1298 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P+ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKLD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|225719684|gb|ACO15688.1| 39S ribosomal protein L44, mitochondrial precursor [Caligus clemensi] Length = 327 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 76/233 (32%), Gaps = 27/233 (11%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI------------SHSYQESYERLEFLGDRILGLLI 55 L R+ +F + LL +A S S ES RL G++++ + Sbjct: 75 ALGARLRESF-DSELLREAFRDPSFYCVPQKEKIDVSLSSAVESNVRLAESGEKLVRDHL 133 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 L F E +S L+SA + +A + L + S Sbjct: 134 DAFLRESFPKVPEEGISAILEHLMSAPVLAFLALHIGLKDLLV---AEEYPPNR---SSL 187 Query: 116 ADVVESLIAALYLDGGIEV--AGTFVDKYWKQRALKSGKFRRDAK-TELQEWAHAKFG-- 170 + +LI A + + G + V + + K T E G Sbjct: 188 VNAFHALIGA-HAESGNDSMQTQQLVVDLVAVQLVGVDLHDI-WKITNPMEMLAGYLGSE 245 Query: 171 VTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 PE ++ + SG + + V + + S A ++AA + L+R Sbjct: 246 GIPEPRLQWVSGRNTVLASYHVGIYSKQTLIGECTGESVGIATELAAIDALRR 298 >gi|82469806|gb|ABB77161.1| R2D2 [Drosophila orosa] Length = 304 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 + A + RD EL+++ P ++ +SG + P F ++ + Sbjct: 73 IGELADEMTNLNRDMLKELRDYCVRNEMPLPIIEIVQQSGTPNAPEFVACCSVASIVR-- 130 Query: 203 GMDCS--KRAAEQVAAAEVL 220 S K+ A Q AA ++L Sbjct: 131 -YGKSDKKKDARQRAAIDML 149 >gi|313754294|pdb|3LLH|A Chain A, Crystal Structure Of The First Dsrbd Of Tar Rna-Binding Protein 2 gi|313754295|pdb|3LLH|B Chain B, Crystal Structure Of The First Dsrbd Of Tar Rna-Binding Protein 2 Length = 90 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + LQE+ + G TP Y + G H P FT V + G S Sbjct: 16 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 64 >gi|156379115|ref|XP_001631304.1| predicted protein [Nematostella vectensis] gi|156218342|gb|EDO39241.1| predicted protein [Nematostella vectensis] Length = 440 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQ 213 K+ L EW + P Y++ R+ + D F +V + A + SKR AEQ Sbjct: 362 PKSVLFEWTRDQKLQPPSYEMVSRTREE-DCSFKSIVIVDNTKYASTEWEKSKRHAEQ 418 >gi|169605923|ref|XP_001796382.1| hypothetical protein SNOG_05994 [Phaeosphaeria nodorum SN15] gi|160706874|gb|EAT87058.2| hypothetical protein SNOG_05994 [Phaeosphaeria nodorum SN15] Length = 247 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 5/91 (5%) Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK--TE-LQEWAHAKFGVTPEYKV 177 +LI AL++ G + F ++ R L D + T L + P ++ Sbjct: 107 ALIGALHIHLGSPLVKRFFRDHFLSRHLDVSTLF-DFRQPTRDLSRLCAREGFEPPVARI 165 Query: 178 TFRSGP-DHDPRFTVVVEISGLAPAQGMDCS 207 +G P F V V +G S Sbjct: 166 ISETGRLSRHPVFVVGVYSGTDKLGEGAGSS 196 >gi|241957902|ref|XP_002421670.1| conserved hypothetical protein [Candida dubliniensis CD36] gi|223645015|emb|CAX39608.1| conserved hypothetical protein [Candida dubliniensis CD36] Length = 533 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 S + S E L+FLG ++ I + F + N L S + + R Sbjct: 196 RSCNESVNSKSENLQFLGKSVMSTCIGYIFEKSFLDLNPQSMLYLRNKLNSEASLGKFFR 255 Query: 90 ELD 92 +LD Sbjct: 256 QLD 258 >gi|198459278|ref|XP_001361331.2| GA11141 [Drosophila pseudoobscura pseudoobscura] gi|198136635|gb|EAL25909.2| GA11141 [Drosophila pseudoobscura pseudoobscura] Length = 1318 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213 D K+ L ++ AK P+ +V ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLFQFC-AKTRTEPKLEV-RQTGPKNRQRFLCEVRVEQTPYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 Score = 36.6 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210 +AK L + A +YK T GPDH F + I A+ +K++ Sbjct: 168 NAKDRLNMYKQANNIRD-DYKYTPV-GPDHARSFMAELSIFVTALKRKVTARETGSNKKS 225 Query: 211 AEQVAAAEVLKRE 223 A + A ++++ Sbjct: 226 ASKSCALSLVRQL 238 >gi|195155374|ref|XP_002018580.1| GL17788 [Drosophila persimilis] gi|194114376|gb|EDW36419.1| GL17788 [Drosophila persimilis] Length = 1318 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213 D K+ L ++ AK P+ +V ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLFQFC-AKTRTEPKLEV-RQTGPKNRQRFLCEVRVEQTPYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 Score = 36.6 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210 +AK L + A +YK T GPDH F + I A+ +K++ Sbjct: 168 NAKDRLNMYKQANNIRD-DYKYTPV-GPDHARSFMAELSIFVTALKRKVTARETGSNKKS 225 Query: 211 AEQVAAAEVLKRE 223 A + A ++++ Sbjct: 226 ASKSCALSLVRQL 238 >gi|291222158|ref|XP_002731085.1| PREDICTED: ATP-dependent RNA helicase A-like protein-like [Saccoglossus kowalevskii] Length = 1325 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K L W K V P+Y+ +G H RF V + G SK+ A+ Sbjct: 3 DIKNFLYSWC-GKKKVVPQYEF-RSAGSKHRQRFMCEVRVQDYDYIGVGNSTSKKDAQAN 60 Query: 215 AAAE 218 A + Sbjct: 61 CARD 64 Score = 43.1 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210 +AK+ L ++ + EYK T GPDH+ F + I A+ +K+ Sbjct: 209 NAKSRLHQFMQTN-RINAEYKYTTV-GPDHNRSFVTELTIFVKQLKRNVYAREHGSNKKL 266 Query: 211 AEQVAAAEVLKRE 223 Q A ++++ Sbjct: 267 GSQACALSLVRQL 279 >gi|68474506|ref|XP_718626.1| hypothetical protein CaO19.7468 [Candida albicans SC5314] gi|46440404|gb|EAK99710.1| hypothetical protein CaO19.7468 [Candida albicans SC5314] Length = 537 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 11/106 (10%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 S + S E L+FLG ++ I + F + N L S + S+ R Sbjct: 198 RSCNESVNSKSENLQFLGKSVMSTCIGYIFEKFFSHVNPQSMLYLRNKLSSELSLSKFFR 257 Query: 90 ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 +LD + + + T++ + + L+ A+ D G E Sbjct: 258 QLD---------PVNTNGINDETAVISLYI--LLGAMVKDFGFEEV 292 >gi|208690895|gb|ACI31223.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Callicebus moloch] Length = 551 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 L K VT Y+ + +GP+ F ++ +K+ A+Q+AA Sbjct: 103 LINRIAQKERVTVNYEQCASGVNGPEG---FHYKCKVGQKEYGIATGSTKQEAKQLAAKL 159 Query: 219 V 219 Sbjct: 160 A 160 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 EL ++ + V YK SGP HD RFT V I G + S Sbjct: 13 ELNKYRQKQGVVL-RYKELPNSGPPHDRRFTFQVIIDGREFPEAEGRS 59 >gi|307567933|pdb|2L33|A Chain A, Solution Nmr Structure Of Drbm 2 Domain Of Interleukin Enhancer- Binding Factor 3 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4527e Length = 91 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF + VE+ G QG + Sbjct: 12 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 63 >gi|294657725|ref|XP_460024.2| DEHA2E16610p [Debaryomyces hansenii CBS767] gi|199432903|emb|CAG88280.2| DEHA2E16610p [Debaryomyces hansenii] Length = 216 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 13/138 (9%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL--- 71 Y+ ++ L + LTH S + + E+L +G +IL L + L+ + + E + Sbjct: 58 YSISD-DLALQVLTHKSFGNGIKPYNEKLSAMGAKILNLFCAKLVTDK-PTTNENAIDGK 115 Query: 72 ------SVRFNSLVSAETCSQVARELDLAS--FIRVSSDLRKDVCSFMTSIQADVVESLI 123 S L + A+ +L S F + + S + A ++ +L+ Sbjct: 116 NLDSLGSPIAKELAGRMSLGLFAKTTNLNSIMFWKSYNHDLSFESSGEMKVSAQMMYALV 175 Query: 124 AALYLDGGIEVAGTFVDK 141 A+ G E+A F+ + Sbjct: 176 GAITFTHGKEIAEAFIRE 193 >gi|209735182|gb|ACI68460.1| 39S ribosomal protein L44, mitochondrial precursor [Salmo salar] Length = 300 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 80/239 (33%), Gaps = 29/239 (12%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERL----E----FLGDRI-LGL-- 53 R+ F+ LL+ A + S +E + L E LGD I L Sbjct: 27 EVQAFSSRLKENFS-PELLKIAFVNPCYIQSEKERRQALCVDSETAALVLGDNIQLNTQG 85 Query: 54 ------LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 +S F S + L S VAR L + + +S+ Sbjct: 86 LEFTKSFLSDWCRASFPSLPSKGVVAVVGHLTSHPVVCHVARNLAIED-LTMSAQFPV-- 142 Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQE 163 + + ++I AL G E AG F+ + + + F + L E Sbjct: 143 ---LDEVLHSTFLAVIGALQESSGAERAGLFLRDFLVTQLVGKDLFEMWSVVNPMGLLLE 199 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + PE ++T +G P + V + A+ + AAE+ +A L++ Sbjct: 200 ELSKRNVALPEPRLTRSAG-TVLPLYFVGLYSDKKIFAEAPGETVLAAEEESARVALRK 257 >gi|82469802|gb|ABB77159.1| R2D2 [Drosophila lucipennis] Length = 299 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217 EL+++ P ++ +SG + P F ++ + S K+ A Q AA Sbjct: 88 ELRDYCVRHDMPLPSIEIVQQSGTPNAPEFVACCTVASIVR---YGKSDKKKDARQRAAI 144 Query: 218 EVL 220 E+L Sbjct: 145 EML 147 >gi|297600250|ref|NP_001048796.2| Os03g0121800 [Oryza sativa Japonica Group] gi|255674167|dbj|BAF10710.2| Os03g0121800 [Oryza sativa Japonica Group] Length = 165 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214 L + + P+Y+ GP H RF V ++ + + S + A+ Sbjct: 84 LNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDS 143 Query: 215 AAAEVLK 221 AA +L+ Sbjct: 144 AAVLLLE 150 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E + EYK R+G TV V + G+ + K+ A+++AA L Sbjct: 1 ERCQQQAEGL-EYKA-SRAGN----IATVEVFVDGVQIGVAQNPQKKMAQKLAARNAL 52 >gi|149247014|ref|XP_001527932.1| hypothetical protein LELG_00452 [Lodderomyces elongisporus NRRL YB-4239] gi|146447886|gb|EDK42274.1| hypothetical protein LELG_00452 [Lodderomyces elongisporus NRRL YB-4239] Length = 640 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 66/216 (30%), Gaps = 37/216 (17%) Query: 16 AFANRSLLEKALTHSSIS-----------HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 ++ LL + T +L G IL +++ LL Sbjct: 180 EIKDQKLLIRVTTDKLYRQLIDFVELPPMKFNNSHNSKLAMRGKNILNMILFELLDEQLQ 239 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 L L S E ++ A +L +++ + DV + I ++V + IA Sbjct: 240 DEYLENLLYMQKRLTSRELLAKFAMGYNLIDWLKYNLSQEADVDEKID-IMSNVFLAYIA 298 Query: 125 ALYLDG-GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE--------- 174 L + ++ +V K + + + LQ+ A A+ Sbjct: 299 GLQEEKYSLDSIREWVKKLYAPIINELIGTEK----PLQKVAMAELESLFRLATNLNNLS 354 Query: 175 YKVTF------RSGPDHDPRFTVVVEISGLAPAQGM 204 YK +S P F V + + + G Sbjct: 355 YKELDLRVTQIQSDP-----FVVQISLDNVILGLGT 385 Score = 41.6 bits (97), Expect = 0.084, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 6/44 (13%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV------LKREGI 225 F V ++G+ G+D SK+ + Q AA L + G+ Sbjct: 594 EFHSVCLLNGVKLGYGIDRSKQRSSQKAAMAAMSNRNELAKLGV 637 >gi|17510279|ref|NP_493554.1| hypothetical protein Y54E5A.6 [Caenorhabditis elegans] gi|3925277|emb|CAA21662.1| C. elegans protein Y54E5A.6, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 436 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 5/70 (7%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215 K L ++ Y+V R D RF I G+ + R AEQVA Sbjct: 360 PKMVLHDYCVETKIPKATYEVVKRD----DKRFVATACIGDKKYRSGIGQPNLRMAEQVA 415 Query: 216 AAEVLKREGI 225 A L I Sbjct: 416 ALAALHGMNI 425 >gi|225470352|ref|XP_002267987.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 935 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 17/33 (51%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +F++ V +G +G ++R A+ AA L Sbjct: 720 QFSIEVWFAGEKIGEGTGKTRREAQCQAAEASL 752 Score = 37.0 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 13/30 (43%) Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 VEI G +G + A+ AA + L Sbjct: 853 AQVEIDGQVLGKGTGSTWDDAKMQAAEKAL 882 >gi|327277433|ref|XP_003223469.1| PREDICTED: ATP-dependent RNA helicase A-like [Anolis carolinensis] Length = 1253 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K L W K +TP Y++ G +F V ++G G +K+ A+ Sbjct: 3 DVKNFLYAWC-GKRKLTPAYEIRAV-GNKTRQKFMCEVRVAGFNYIGMGNSTNKKDAQTN 60 Query: 215 AAAEVLK 221 AA + L Sbjct: 61 AARDFLN 67 Score = 42.8 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I A+ + +K+ Sbjct: 174 NAKARLNQFFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYVKQLARRIFAREHGSNKKL 231 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 232 AAQSCALSLVRQL 244 >gi|156550653|ref|XP_001604965.1| PREDICTED: similar to maleless protein [Nasonia vitripennis] Length = 1256 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K L +W AK P ++V +GP H RF + ++G A G +K+ A+ Sbjct: 3 DIKAFLHQWC-AKNSTEPSFEV-RPTGPKHRQRFLCELRVNGYDYVAVGNSTNKKDAQGN 60 Query: 215 AAAE 218 A+ + Sbjct: 61 ASRD 64 >gi|195353782|ref|XP_002043382.1| GM16493 [Drosophila sechellia] gi|194127505|gb|EDW49548.1| GM16493 [Drosophila sechellia] Length = 1298 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213 D K+ L ++ AK + P+ ++GP + RF V + G +K+ AE+ Sbjct: 1 MDIKSFLYQFC-AKSQIEPKLD-IRQTGPKNRQRFLCEVRVQPNTYIGVGNSTNKKDAEK 58 Query: 214 VAAAE 218 A + Sbjct: 59 NACRD 63 >gi|291001343|ref|XP_002683238.1| predicted protein [Naegleria gruberi] gi|284096867|gb|EFC50494.1| predicted protein [Naegleria gruberi] Length = 393 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 27/44 (61%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++LL +++TH+S S ERL F+G +L ++++ ++ + Sbjct: 133 QTLLLRSVTHASYGTGKVRSQERLSFIGSFVLNMVLTEIISQKY 176 >gi|208690899|gb|ACI31225.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Colobus guereza] Length = 550 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 A K T Y+ ++ GP+ F ++ + G +K+ A+Q+AA Sbjct: 108 IAQKKRL-TVNYEPCISGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKFA 161 Score = 36.6 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +L ++ + Y+ +GP HD RFT V + S Sbjct: 13 QLNKYRQKQGIKL-SYQELPNTGPPHDRRFTFRVISDKRQFPEAEGRS 59 >gi|195045040|ref|XP_001991926.1| GH12926 [Drosophila grimshawi] gi|193901684|gb|EDW00551.1| GH12926 [Drosophila grimshawi] Length = 460 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 48/151 (31%), Gaps = 15/151 (9%) Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCS--FMTSIQADVVESLIAALYLDGG-IEVAGT 137 +T Q+ L + R KD + I ++ + + L L +E Sbjct: 303 CQTLQQICEIWHLGDYCRRRQQELKDHGNAGRANVILSECLNNKRQKLDLSEDAMEEYEG 362 Query: 138 FVDKYWKQRALKSGKFRRD---AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + + A + D KT L A P Y+ D F + Sbjct: 363 VISR---KMAFLRSTYTSDTQLPKTVLYVHAGRLGKQPPCYETQRC-----DKLFRAICS 414 Query: 195 ISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224 G + + +K+ AEQ AA L G Sbjct: 415 YDGQRYSSSFWEKNKKQAEQGAALVALLELG 445 >gi|31747519|gb|AAP57628.1| interferon-inducible double-stranded RNA-dependent protein kinase [Homo sapiens] Length = 510 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 20/41 (48%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV +Y+ SGP HD RFT V I G +G S Sbjct: 19 QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 59 Score = 44.3 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 L K +T Y+ + GP+ F ++ + G +K+ A+Q+AA Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160 Query: 219 V 219 Sbjct: 161 A 161 >gi|208431829|ref|NP_001129124.1| interferon-induced, double-stranded RNA-activated protein kinase isoform b [Homo sapiens] Length = 510 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 20/41 (48%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV +Y+ SGP HD RFT V I G +G S Sbjct: 19 QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 59 Score = 44.3 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 L K +T Y+ + GP+ F ++ + G +K+ A+Q+AA Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160 Query: 219 V 219 Sbjct: 161 A 161 >gi|33871554|gb|AAH07769.1| EIF2AK2 protein [Homo sapiens] Length = 384 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 20/41 (48%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV +Y+ SGP HD RFT V I G +G S Sbjct: 19 QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 59 Score = 44.3 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 L K +T Y+ + GP+ F ++ + G +K+ A+Q+AA Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160 Query: 219 V 219 Sbjct: 161 A 161 >gi|219520292|gb|AAI43231.1| EIF2AK2 protein [Homo sapiens] Length = 546 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 20/41 (48%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV +Y+ SGP HD RFT V I G +G S Sbjct: 19 QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 59 Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 L K +T Y+ + GP+ F ++ + G +K+ A+Q+AA Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160 Query: 219 V 219 Sbjct: 161 A 161 >gi|312218399|emb|CBX98345.1| hypothetical protein [Leptosphaeria maculans] Length = 560 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 12/128 (9%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ RI YAF N ++E AL S + + L G +L + + Sbjct: 5 VQSRINYAFENEQIVELAL--RSAHRDKHTGEGNDGNRGLAHYG--VLAISMVETHNVIV 60 Query: 64 DS-AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 +S +L VR + + + + R L FI S+ R+ S ++ + + +L Sbjct: 61 ESGKTLHDLHVRNHWWNTKKGRAAACRSLGFEPFIVRST--RQHYQSLSDAVLDNALSAL 118 Query: 123 IAALYLDG 130 I A++LD Sbjct: 119 IGAVWLDC 126 >gi|195118471|ref|XP_002003760.1| GI21342 [Drosophila mojavensis] gi|193914335|gb|EDW13202.1| GI21342 [Drosophila mojavensis] Length = 318 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217 EL+++ P ++ +SG + P F ++ + S K+ A Q AA Sbjct: 107 ELRDYCVRHDMPLPVIEIVQQSGSPNAPEFVACCSVASIKR---YGKSDKKKDARQRAAI 163 Query: 218 EVL 220 E+L Sbjct: 164 EML 166 Score = 44.3 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + LQE+ +P Y+ G D + V + + A G SKR A+ Sbjct: 3 NKSAVSALQEYCAQAKTGSPVYEYID--GADVG--YLCKVVLMDIE-AFGNGRSKRDAKH 57 Query: 214 VAAAEVLKRE 223 +AAA ++++ Sbjct: 58 LAAANIIRKL 67 >gi|60824577|gb|AAX36685.1| protein kinase interferon-inducible double stranded RNA dependent [synthetic construct] Length = 552 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 20/41 (48%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV +Y+ SGP HD RFT V I G +G S Sbjct: 19 QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 59 Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 L K +T Y+ + GP+ F ++ + G +K+ A+Q+AA Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160 Query: 219 V 219 Sbjct: 161 A 161 >gi|208690901|gb|ACI31226.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Trachypithecus francoisi] Length = 550 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 A K T Y+ ++ GP+ F ++ + G +K+ A+Q+AA Sbjct: 108 IAQKKRL-TVNYEPCISGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKFA 161 Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +L ++ + Y+ +GP HD RFT V + S Sbjct: 13 QLNKYRQKQGIKL-SYQELPNTGPPHDRRFTFRVISDRREFPEAEGRS 59 >gi|215768941|dbj|BAH01170.1| unnamed protein product [Oryza sativa Japonica Group] Length = 180 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 8/68 (11%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-------DCSKRAAE 212 L + A P Y GP H FT V I + + SK+AA+ Sbjct: 104 RLHKICSATHWKEPSYDF-EEQGPSHLKLFTCKVTIHVDTFTTTIVECISEPNRSKKAAQ 162 Query: 213 QVAAAEVL 220 + AA L Sbjct: 163 EHAAQGAL 170 >gi|27371006|gb|AAH40851.1| EIF2AK2 protein [Homo sapiens] gi|34784744|gb|AAH57805.1| EIF2AK2 protein [Homo sapiens] Length = 513 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 20/41 (48%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV +Y+ SGP HD RFT V I G +G S Sbjct: 19 QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 59 Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 L K +T Y+ + GP+ F ++ + G +K+ A+Q+AA Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160 Query: 219 V 219 Sbjct: 161 A 161 >gi|4506103|ref|NP_002750.1| interferon-induced, double-stranded RNA-activated protein kinase isoform a [Homo sapiens] gi|208431827|ref|NP_001129123.1| interferon-induced, double-stranded RNA-activated protein kinase isoform a [Homo sapiens] gi|125527|sp|P19525|E2AK2_HUMAN RecName: Full=Interferon-induced, double-stranded RNA-activated protein kinase; AltName: Full=Eukaryotic translation initiation factor 2-alpha kinase 2; Short=eIF-2A protein kinase 2; AltName: Full=Interferon-inducible RNA-dependent protein kinase; AltName: Full=P1/eIF-2A protein kinase; AltName: Full=Protein kinase RNA-activated; Short=PKR; AltName: Full=p68 kinase gi|189506|gb|AAA36409.1| p68 kinase [Homo sapiens] gi|189782|gb|AAA18253.1| P1/eIF-2a protein kinase [Homo sapiens] gi|1537049|gb|AAC50768.1| interferon-inducible RNA-dependent protein kinase [Homo sapiens] gi|28372413|gb|AAO38055.1| protein kinase, interferon-inducible double stranded RNA dependent [Homo sapiens] gi|61354795|gb|AAX41060.1| protein kinase interferon-inducible double stranded RNA dependent [synthetic construct] gi|62739920|gb|AAH93676.1| Eukaryotic translation initiation factor 2-alpha kinase 2 [Homo sapiens] gi|62988930|gb|AAY24317.1| unknown [Homo sapiens] gi|75517635|gb|AAI01476.1| Eukaryotic translation initiation factor 2-alpha kinase 2 [Homo sapiens] gi|119620811|gb|EAX00406.1| eukaryotic translation initiation factor 2-alpha kinase 2, isoform CRA_a [Homo sapiens] gi|119620812|gb|EAX00407.1| eukaryotic translation initiation factor 2-alpha kinase 2, isoform CRA_a [Homo sapiens] gi|119620813|gb|EAX00408.1| eukaryotic translation initiation factor 2-alpha kinase 2, isoform CRA_a [Homo sapiens] gi|119620814|gb|EAX00409.1| eukaryotic translation initiation factor 2-alpha kinase 2, isoform CRA_a [Homo sapiens] gi|158254742|dbj|BAF83344.1| unnamed protein product [Homo sapiens] gi|189054047|dbj|BAG36554.1| unnamed protein product [Homo sapiens] Length = 551 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 20/41 (48%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV +Y+ SGP HD RFT V I G +G S Sbjct: 19 QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 59 Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 L K +T Y+ + GP+ F ++ + G +K+ A+Q+AA Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160 Query: 219 V 219 Sbjct: 161 A 161 >gi|301758056|ref|XP_002914888.1| PREDICTED: interferon-induced, double-stranded RNA-activated protein kinase-like [Ailuropoda melanoleuca] Length = 539 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 160 ELQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L A + + Y+ GP+ RF +I A G +K+ A+Q+AA Sbjct: 107 RLNRLAQKEKL-SVNYEQCELKEYGPE---RFYYRCKIGQKEYAVGGGATKQDAKQMAAK 162 Query: 218 EVLKR 222 + Sbjct: 163 FAYDQ 167 Score = 42.4 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 EL + V Y+++ GP H+ +FT V I+ ++ Sbjct: 13 ELNTYCQKHSLVLKYYELSKE-GPAHNLKFTFQVIINERKYSEAEG 57 >gi|61364980|gb|AAX42635.1| protein kinase interferon-inducible double stranded RNA dependent [synthetic construct] Length = 552 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 20/41 (48%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV +Y+ SGP HD RFT V I G +G S Sbjct: 19 QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 59 Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 L K +T Y+ + GP+ F ++ + G +K+ A+Q+AA Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160 Query: 219 V 219 Sbjct: 161 A 161 >gi|60812550|gb|AAX36216.1| protein kinase interferon-inducible double stranded RNA dependent [synthetic construct] Length = 551 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 20/41 (48%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV +Y+ SGP HD RFT V I G +G S Sbjct: 19 QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 59 Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 L K +T Y+ + GP+ F ++ + G +K+ A+Q+AA Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160 Query: 219 V 219 Sbjct: 161 A 161 >gi|238879557|gb|EEQ43195.1| conserved hypothetical protein [Candida albicans WO-1] Length = 537 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 11/104 (10%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 S + S E L+FLG ++ I + F + N L S + S+ R Sbjct: 198 RSCNESVNSKSENLQFLGKSVMSTCIGYIFEKSFSHVNPQSMLYLRNKLSSELSLSKFFR 257 Query: 90 ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 +LD + + + T++ + + L+ A+ D G E Sbjct: 258 QLD---------PVNTNGINDETAVISLYI--LLGAMVKDFGFE 290 >gi|225382104|gb|ACN89264.1| putative dicer-like protein [Thalassiosira pseudonana] Length = 1276 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 20/114 (17%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS-TLLFNHFDSAKEGE--LSVRFNS 77 LL A +S S S + ERLE LGD +L I + ++ E E L + + Sbjct: 847 RLLNLA---TSASGSSVNTSERLESLGDAVLLFFIVLNVFAAKSPASDEVEMVLDLFRSV 903 Query: 78 LV---SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 + + + L + + +DV ES++ A Y+ Sbjct: 904 ITMQGRNKVLVRAGMRLGMHVLLDC-----------KQKKLSDVFESILGAAYI 946 Score = 39.3 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 28/57 (49%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 E+L ++G+ L L + +++H A G++ ++S ++ + + + L + Sbjct: 1078 EKLYYVGNSALQLKLVEEIYHHHTEATSGDIHFMKVVMLSDDSMAYILVKNGLHKCL 1134 >gi|82469814|gb|ABB77165.1| R2D2 [Drosophila rufa] Length = 305 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 5/74 (6%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207 + RD EL+++ P ++ +SG + P F ++ + S Sbjct: 81 EMTNLNRDMLKELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSD 137 Query: 208 -KRAAEQVAAAEVL 220 K+ A Q AA +L Sbjct: 138 KKKDARQRAAIAML 151 Score = 36.6 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P Y+ G D + V + + A G SKR A+ +AA +L++ Sbjct: 1 CAKSKNCPPTYEFID--GEDGG--YVCKVTMLEIE-AYGNGRSKRDAKHLAAGNILRK 53 >gi|47226767|emb|CAG06609.1| unnamed protein product [Tetraodon nigroviridis] Length = 653 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 13/145 (8%) Query: 50 ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 +L + L N A + + VS + R++ R L Sbjct: 521 VLRSSVHEELSNSGPQAWLKKDQFLRAAPVSGGVGELLMRKMGW----RTGEGL----GR 572 Query: 110 FMTSIQADVVESLIAALYLDG-GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 VE +I +D G+ G K + + + L E + + Sbjct: 573 NRE----GTVEPIIIDFKVDRKGLVAEGEKAQKQTGGLVVTKDLMGKHPVSALIELCNKQ 628 Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVV 193 + PE+ + SGPDH F V Sbjct: 629 RILQPEFVMVHHSGPDHRKNFLFKV 653 >gi|281204426|gb|EFA78621.1| hypothetical protein PPL_08076 [Polysphondylium pallidum PN500] Length = 354 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 11/123 (8%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 +S+E EF GD IL S + A ++ + S +T + + Sbjct: 88 DSFELFEFSGDSILAKEFSDR-TTKYPGASPYICTLFKSHGCSNDTLTF------FYHLL 140 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW--KQRALKSGKFRR 155 +SS L DV + QAD++E++I LY +A + ++ + + Sbjct: 141 HISSKLL-DVPPTIPKKQADIMEAMIHELYHAQN-NIARSTLEMFILVLLQYTNITFHHS 198 Query: 156 DAK 158 D K Sbjct: 199 DPK 201 >gi|326918955|ref|XP_003205750.1| PREDICTED: adenosine deaminase domain-containing protein 1-like [Meleagris gallopavo] Length = 491 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 D + K + + L +A ++ + ++K T +G F + + G+ Sbjct: 18 DAWLADLVAGYQKGAVNPVSALHRFAQ-RYSMQLDFKETGVAGHTISSYFGISAVLDGVY 76 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ ++Q AA L Sbjct: 77 YKTGLGRNKKESKQCAAKLALDEL 100 >gi|309360573|emb|CAP31071.2| hypothetical protein CBG_12024 [Caenorhabditis briggsae AF16] Length = 806 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 8/86 (9%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---- 200 Q + ++ + + E + P + SG DH F V I+ + Sbjct: 715 QNNVPIDLSTKNPISLVMELCAKRRWNAPSFTC-EESGADHSKMFIWTVVINNVQYRPMC 773 Query: 201 AQGMDCSKRAAEQVAAAEVLKREGIW 226 K+ + VA L+ G+ Sbjct: 774 GS---KQKKEGKAVACQVALQSLGVL 796 >gi|116196242|ref|XP_001223933.1| hypothetical protein CHGG_04719 [Chaetomium globosum CBS 148.51] gi|88180632|gb|EAQ88100.1| hypothetical protein CHGG_04719 [Chaetomium globosum CBS 148.51] Length = 221 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 53/181 (29%), Gaps = 8/181 (4%) Query: 47 GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 G+ ++G K + +V + +V D +R+ +D Sbjct: 5 GNAVVG--FGYRRAEADGLKKHKWRHGMSSRVVFDDDFGEVVDTEDAKDELRLRADAEYG 62 Query: 107 VCSFM---TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTEL 161 A ++ A+Y G E A F+ + R L K + EL Sbjct: 63 NEYTRSLAEKAYATCARAVTGAIYAHAGRERAKAFIGAHVLSRTLDLSKLFAFKKPTREL 122 Query: 162 QEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P ++ +G P + V + + S A AA L Sbjct: 123 SLLCAREDFEPPVARLLSETGRLSRTPVYVVGIFSGKDKLGEAAGSSLEYARTGAAMNAL 182 Query: 221 K 221 K Sbjct: 183 K 183 >gi|198420373|ref|XP_002122509.1| PREDICTED: similar to dsRNA adenosine deaminase [Ciona intestinalis] Length = 517 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 R+ + + E+A +K SGP H F+ V I G+ +K+ ++ Sbjct: 57 RNPISVINEYAQSKQLS--VKCEVSSSGPSHKQMFSTVFTIGDDVFPAGIGSNKKESKVK 114 Query: 215 AAAEVLKRE 223 +A VL + Sbjct: 115 SAEIVLHQL 123 >gi|116283356|gb|AAH22314.1| EIF2AK2 protein [Homo sapiens] Length = 363 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 20/41 (48%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV +Y+ SGP HD RFT V I G +G S Sbjct: 19 QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 59 Score = 43.9 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 L K +T Y+ + GP+ F ++ + G +K+ A+Q+AA Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160 Query: 219 V 219 Sbjct: 161 A 161 >gi|114576952|ref|XP_001166509.1| PREDICTED: eukaryotic translation initiation factor 2-alpha kinase 2 isoform 4 [Pan troglodytes] Length = 552 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 20/41 (48%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV +Y+ SGP HD RFT V I G +G S Sbjct: 19 QKQGVVLKYQELPNSGPPHDRRFTFRVIIDGREFPEGEGRS 59 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 L K +T Y+ + GP+ F ++ + G +K+ A+Q+AA Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTSSTKQEAKQLAAKL 160 Query: 219 V 219 Sbjct: 161 A 161 >gi|159162913|pdb|1QU6|A Chain A, Structure Of The Double-Stranded Rna-Binding Domain Of The Protein Kinase Pkr Reveals The Molecular Basis Of Its Dsrna-Mediated Activation Length = 179 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 20/41 (48%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV +Y+ SGP HD RFT V I G +G S Sbjct: 24 QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 64 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 L K +T Y+ + GP+ F ++ + G +K+ A+Q+AA Sbjct: 109 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 165 Query: 219 V 219 Sbjct: 166 A 166 >gi|222537768|ref|NP_001138509.1| interferon-induced, double-stranded RNA-activated protein kinase [Pan troglodytes] gi|208690875|gb|ACI31213.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pan paniscus] gi|208690877|gb|ACI31214.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pan troglodytes] Length = 552 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 20/41 (48%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV +Y+ SGP HD RFT V I G +G S Sbjct: 19 QKQGVVLKYQELPNSGPPHDRRFTFRVIIDGREFPEGEGRS 59 Score = 39.7 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 L K +T Y+ + GP+ F ++ + G +K+ A+Q+AA Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTSSTKQEAKQLAAKL 160 Query: 219 V 219 Sbjct: 161 A 161 >gi|17863006|gb|AAL39980.1| SD08006p [Drosophila melanogaster] Length = 460 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 17/152 (11%) Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI-------AALYLDGGIE 133 +T Q+ +L + R K + + + + E+L AA+ + + Sbjct: 303 CQTLQQICEIWELGDYCRRKQRELKTMGNSG-RAEVEPPEALAKRQKLEDAAIAITDEYD 361 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + + KT+L A P Y+ D F + Sbjct: 362 GIICRHMPFLRSTYPSDNHL---PKTQLYVHAVKTGKSPPAYETQQC-----DKLFRSIC 413 Query: 194 EISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224 G + + +K+ AEQ AA L G Sbjct: 414 TYDGQRFSSSFWEKNKKQAEQGAALVALLHLG 445 >gi|82469842|gb|ABB77179.1| R2D2 [Drosophila simulans] Length = 311 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + L E+ P Y F G D F VE+ L A G SKR A+ Sbjct: 3 NKSAVSALHEFCAKTNNTPPTYN--FIKGEDGG--FVCKVELLELE-ALGNGRSKRDAKH 57 Query: 214 VAAAEVLKR 222 +AAA ++++ Sbjct: 58 LAAANIMRK 66 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 5/74 (6%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207 + RD EL+++ P +V +SG P F ++ + S Sbjct: 88 EMTNLNRDMLKELRDYCVRHDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 144 Query: 208 -KRAAEQVAAAEVL 220 K+ A Q AA E+L Sbjct: 145 KKKDARQRAAIEML 158 >gi|45549423|ref|NP_572950.2| CG1434 [Drosophila melanogaster] gi|45446950|gb|AAF48360.2| CG1434 [Drosophila melanogaster] gi|162944734|gb|ABY20436.1| GH10289p [Drosophila melanogaster] Length = 473 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 17/152 (11%) Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI-------AALYLDGGIE 133 +T Q+ +L + R K + + + + E+L AA+ + + Sbjct: 316 CQTLQQICEIWELGDYCRRKQRELKTMGNSG-RAEVEPPEALAKRQKLEDAAIAITDEYD 374 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + + KT+L A P Y+ D F + Sbjct: 375 GIICRHMPFLRSTYPSDNHL---PKTQLYVHAVKTGKSPPAYETQQC-----DKLFRSIC 426 Query: 194 EISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224 G + + +K+ AEQ AA L G Sbjct: 427 TYDGQRFSSSFWEKNKKQAEQGAALVALLHLG 458 >gi|195448673|ref|XP_002071763.1| GK10156 [Drosophila willistoni] gi|194167848|gb|EDW82749.1| GK10156 [Drosophila willistoni] Length = 458 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 6/69 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 KT L A P Y+ D F V G + + +K+ AEQ A Sbjct: 380 PKTRLYVHAGRLSKSPPAYETKQC-----DKLFRAVCLFDGQRFSSTFWEKNKKQAEQGA 434 Query: 216 AAEVLKREG 224 A L G Sbjct: 435 ALVALLHMG 443 >gi|242032961|ref|XP_002463875.1| hypothetical protein SORBIDRAFT_01g008080 [Sorghum bicolor] gi|241917729|gb|EER90873.1| hypothetical protein SORBIDRAFT_01g008080 [Sorghum bicolor] Length = 1148 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 10/93 (10%) Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-- 188 G E + + K + K+ LQ P+YK H Sbjct: 1018 GRETSRARLRNPEDDSKSNIIKDGMNPKSLLQTLLMRAGHTPPKYKTK------HLKTNE 1071 Query: 189 FTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVL 220 F +VE G+ G +K+ AE+ AA E L Sbjct: 1072 FRAMVEFKGMQ-FVGKPKRNKQLAERDAAIEAL 1103 >gi|327304857|ref|XP_003237120.1| hypothetical protein TERG_01842 [Trichophyton rubrum CBS 118892] gi|326460118|gb|EGD85571.1| hypothetical protein TERG_01842 [Trichophyton rubrum CBS 118892] Length = 161 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 6/127 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 R +E + Y F +++L AL S + L +G ++ L + T ++ Sbjct: 16 RAKAMEDLLEYRFKDKTLPLSALNLPGRLTSI-KDNTGLAQVGKAVMELFLITDGYDK-- 72 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 ++ ++ + V + L + ++ S A V++L+ Sbjct: 73 DMDPENINTLLTYILDNSKLADVGTKKGLGRCMM---GMQSGTTSLTPLYTARTVQALMG 129 Query: 125 ALYLDGG 131 A+Y+D Sbjct: 130 AVYIDSD 136 >gi|170572085|ref|XP_001891977.1| dihydrouridine synthase domain containing protein [Brugia malayi] gi|158603180|gb|EDP39210.1| dihydrouridine synthase domain containing protein [Brugia malayi] Length = 437 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 4/93 (4%) Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 E +F+D + + L+ K L + P Y+ R D R+ + Sbjct: 337 ETGISFIDLTFPPKRLRDRSGAVTPKCILNAFCDENGINRPIYQCKLRIT---DKRYEAI 393 Query: 193 VEISGLAPAQGMD-CSKRAAEQVAAAEVLKREG 224 VEI + + +K+ AEQVAA L G Sbjct: 394 VEIDHKKFSSRIGQPNKKMAEQVAALAALIGLG 426 >gi|91084515|ref|XP_967225.1| PREDICTED: similar to DISCO Interacting Protein 1 CG17686-PC isoform 1 [Tribolium castaneum] gi|270012651|gb|EFA09099.1| hypothetical protein TcasGA2_TC015220 [Tribolium castaneum] Length = 359 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y VT P ++T V + G+ G SK A+ +AA LK Sbjct: 157 TYTVTDVPQPPEMNQYTATVLVDGVTH-IGHGRSKMEAKSMAAENALK 203 Score = 41.2 bits (96), Expect = 0.097, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR-EGI 225 +++ R+G + FT + G + G +K++A+++AA V + GI Sbjct: 297 QFEELGRTGNPPNVIFTFKCTVGGQS-FNGTGPNKKSAKKMAAFAVCHKMLGI 348 >gi|82469846|gb|ABB77181.1| R2D2 [Drosophila simulans] Length = 311 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + L E+ P Y F G D F VE+ L A G SKR A+ Sbjct: 3 NKSAVSALHEFCAKTNNTPPTYN--FIKGEDGG--FVCKVELLELE-ALGNGRSKRDAKH 57 Query: 214 VAAAEVLKR 222 +AAA ++++ Sbjct: 58 LAAANIMRK 66 Score = 43.1 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 5/74 (6%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207 + RD EL+++ P +V +SG P F ++ + S Sbjct: 88 EMTNLNRDMLKELRDYCVRHDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 144 Query: 208 -KRAAEQVAAAEVL 220 K+ A Q AA E+L Sbjct: 145 KKKDARQRAAIEML 158 >gi|168048900|ref|XP_001776903.1| predicted protein [Physcomitrella patens subsp. patens] gi|162671759|gb|EDQ58306.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1152 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 5/52 (9%) Query: 177 VTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDH F + + + A G +K AE+ + Sbjct: 152 TLRSSGPDHAKTFVAELTVPLRNKGEVFVAVGQGPNKAEAERACCTAACAKL 203 >gi|156368791|ref|XP_001627875.1| predicted protein [Nematostella vectensis] gi|156214837|gb|EDO35812.1| predicted protein [Nematostella vectensis] Length = 803 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 9/74 (12%) Query: 156 DAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKR 209 ++K+ L ++ +Y GPDH+ F + + +K+ Sbjct: 30 NSKSRLHQFLQQNRLPAEFKY---GAVGPDHNRAFKCELSVFVKSHRRNIHGTANASTKK 86 Query: 210 AAEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 87 QAAQSCALSLVRQL 100 >gi|82469848|gb|ABB77182.1| R2D2 [Drosophila simulans] gi|82469852|gb|ABB77184.1| R2D2 [Drosophila simulans] Length = 311 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + L E+ P Y F G D F VE+ L A G SKR A+ Sbjct: 3 NKSAVSALHEFCAKTNNTPPTYN--FIKGEDGG--FVCKVELLELE-ALGNGRSKRDAKH 57 Query: 214 VAAAEVLKR 222 +AAA ++++ Sbjct: 58 LAAANIMRK 66 Score = 43.1 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 5/74 (6%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207 + RD EL+++ P +V +SG P F ++ + S Sbjct: 88 EMTNLNRDMLKELRDYCVRHDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 144 Query: 208 -KRAAEQVAAAEVL 220 K+ A Q AA E+L Sbjct: 145 KKKDARQRAAIEML 158 >gi|195352556|ref|XP_002042778.1| GM17665 [Drosophila sechellia] gi|194126809|gb|EDW48852.1| GM17665 [Drosophila sechellia] Length = 473 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 17/152 (11%) Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI-------AALYLDGGIE 133 +T Q+ +L + R + + + + + ESL AA+ + G E Sbjct: 316 CQTLQQICEIWELGEYCRRKQRELRTMGNSG-RAEVEPPESLAKRQKLEDAAIDIPDGYE 374 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + + KT+L A P Y+ D F + Sbjct: 375 GIICRHMPFLRSTYPSDNHL---PKTQLYVHAVKAGKSPPAYETQQC-----DKLFRSIC 426 Query: 194 EISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224 + + +K+ AEQ AA L G Sbjct: 427 TYDDQRFSSSYWEKNKKQAEQGAALVALLHLG 458 >gi|82469844|gb|ABB77180.1| R2D2 [Drosophila simulans] Length = 311 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + L E+ P Y F G D F VE+ L A G SKR A+ Sbjct: 3 NKSAVSALHEFCAKTNNTPPTYN--FIKGEDGG--FVCKVELLELE-ALGNGRSKRDAKH 57 Query: 214 VAAAEVLKR 222 +AAA ++++ Sbjct: 58 LAAANIMRK 66 Score = 43.1 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 5/74 (6%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207 + RD EL+++ P +V +SG P F ++ + S Sbjct: 88 EMTNLNRDMLKELRDYCVRHDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 144 Query: 208 -KRAAEQVAAAEVL 220 K+ A Q AA E+L Sbjct: 145 KKKDARQRAAIEML 158 >gi|66825203|ref|XP_645956.1| hypothetical protein DDB_G0269426 [Dictyostelium discoideum AX4] gi|60474126|gb|EAL72063.1| hypothetical protein DDB_G0269426 [Dictyostelium discoideum AX4] Length = 733 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 K +L E+ K P Y T G +H+ F +V ++G Sbjct: 10 KVQLNEFLQKKKQPIPIYH-TESKGSEHNKDFKSIVVVNGKQI 51 >gi|268560900|ref|XP_002646317.1| Hypothetical protein CBG12024 [Caenorhabditis briggsae] Length = 762 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 8/86 (9%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---- 200 Q + ++ + + E + P + SG DH F V I+ + Sbjct: 671 QNNVPIDLSTKNPISLVMELCAKRRWNAPSFTC-EESGADHSKMFIWTVVINNVQYRPMC 729 Query: 201 AQGMDCSKRAAEQVAAAEVLKREGIW 226 K+ + VA L+ G+ Sbjct: 730 GS---KQKKEGKAVACQVALQSLGVL 752 >gi|255564369|ref|XP_002523181.1| conserved hypothetical protein [Ricinus communis] gi|223537588|gb|EEF39212.1| conserved hypothetical protein [Ricinus communis] Length = 970 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + GP + +E+ + G K+ AEQ AA L++ GI Sbjct: 50 IPQKGPS---LYRCSLELPEIFVVSGTFKKKKDAEQCAAEMALEKLGI 94 >gi|198474406|ref|XP_002132686.1| GA25965 [Drosophila pseudoobscura pseudoobscura] gi|198138378|gb|EDY70088.1| GA25965 [Drosophila pseudoobscura pseudoobscura] Length = 398 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 11/74 (14%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ + L E+ TP+Y+ + F+ VE+ + G SK++A Sbjct: 3 DQNFVSYLVEFCVKLKLNTPKYRYVTEE----NREFSCNVELQDIQ-GYGRARSKQSAAH 57 Query: 214 VAAAEVLKREGIWT 227 VAA +WT Sbjct: 58 VAARN------VWT 65 >gi|294891381|ref|XP_002773551.1| hypothetical protein Pmar_PMAR029530 [Perkinsus marinus ATCC 50983] gi|239878723|gb|EER05367.1| hypothetical protein Pmar_PMAR029530 [Perkinsus marinus ATCC 50983] Length = 536 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 11/82 (13%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPE-----YKVTFRSGPDHDPRFTVVVEIS---GLAP 200 +S ++R DAK+ L K G Y G D+ F +V + G Sbjct: 446 ESSRYRMDAKSRLNHALQRKLGRPVTRMDVTYHTELVQGKDN--LFRSIVRLGCLPGDRT 503 Query: 201 AQGMDC-SKRAAEQVAAAEVLK 221 +G K +AEQ AAA L+ Sbjct: 504 FEGFGAVGKGSAEQDAAARALE 525 >gi|82469840|gb|ABB77178.1| R2D2 [Drosophila simulans] Length = 311 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + L E+ P Y F G D F VE+ L A G SKR A+ Sbjct: 3 NKSAVSALHEFCAKTNNTPPTYN--FIKGEDGG--FVCKVELLELE-ALGNGRSKRDAKH 57 Query: 214 VAAAEVLKR 222 +AAA ++++ Sbjct: 58 LAAANIMRK 66 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 5/74 (6%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207 + RD EL+++ P +V +SG P F ++ + S Sbjct: 88 EMTNLNRDMLKELRDYCVRHDMPLPXIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 144 Query: 208 -KRAAEQVAAAEVL 220 K+ A Q AA E+L Sbjct: 145 KKKDARQRAAIEML 158 >gi|308470958|ref|XP_003097711.1| hypothetical protein CRE_14205 [Caenorhabditis remanei] gi|308239829|gb|EFO83781.1| hypothetical protein CRE_14205 [Caenorhabditis remanei] Length = 436 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 5/70 (7%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215 K L ++ Y+VT R D RF I G+ + R AEQVA Sbjct: 360 PKMALHDYCVETKTPKATYEVTKRD----DKRFIATATIGEKKFRSGIGQPNVRMAEQVA 415 Query: 216 AAEVLKREGI 225 A L I Sbjct: 416 ALAALHGMNI 425 >gi|281207203|gb|EFA81386.1| hypothetical protein PPL_05371 [Polysphondylium pallidum PN500] Length = 385 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 14/142 (9%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDSAKE 68 + F + +++ +A+ S ++ Q SY R FLG+ I I L N + Sbjct: 139 KFNIQFKD-NIIPQAIIESLSQNTKQYSYSHLNRYFFLGNVIYNTNILEQLKNSGIEHET 197 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE-----SLI 123 + + + + S+ + L+ FI S S S + Sbjct: 198 K--AEYKSIIKGSYFLSKRCEIIGLSEFI---SGSMPSDQSKFKSFYLKHFHYRSLMQFV 252 Query: 124 AALYLDGGIEVAGTFVDKYWKQ 145 ALY + G+ VA F+DK+ Q Sbjct: 253 GALYQEQGLNVANEFIDKFILQ 274 >gi|301615908|ref|XP_002937403.1| PREDICTED: ATP-dependent RNA helicase A-like protein [Xenopus (Silurana) tropicalis] Length = 1257 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 D K L W K +TP Y+ +G +F V + G GM S K+ A+ Sbjct: 3 DIKNFLYAWC-GKKKLTPNYE-IRAAGNKMRQKFMCEVRVDGFNY-TGMGNSTNKKDAQT 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 Score = 41.2 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV----VE-ISGLAPAQGMDCSKRA 210 +AK L ++ + EYK + GPDH+ F V+ + A+ +K+ Sbjct: 183 NAKARLNQFFQKE-KTQGEYK-YSQVGPDHNRSFIAEMTLYVKQLGRRITAREHGSNKKL 240 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 241 AAQSCALSIVRQL 253 >gi|195577381|ref|XP_002078549.1| r2d2 [Drosophila simulans] gi|82469850|gb|ABB77183.1| R2D2 [Drosophila simulans] gi|194190558|gb|EDX04134.1| r2d2 [Drosophila simulans] Length = 311 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + L E+ P Y F G D F VE+ L A G SKR A+ Sbjct: 3 NKSAVSALHEFCAKTNNTPPTYN--FIKGEDGG--FVCKVELLELE-ALGNGRSKRDAKH 57 Query: 214 VAAAEVLKR 222 +AAA ++++ Sbjct: 58 LAAANIMRK 66 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 5/74 (6%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207 + RD EL+++ P +V +SG P F ++ + S Sbjct: 88 EMTNLNRDMLKELRDYCVRHDMPLPRIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 144 Query: 208 -KRAAEQVAAAEVL 220 K+ A Q AA E+L Sbjct: 145 KKKDARQRAAIEML 158 >gi|224005857|ref|XP_002291889.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220972408|gb|EED90740.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 1310 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 18/80 (22%) Query: 159 TELQEWAHAKFGVTPEYKVTF------RSGPDHD------------PRFTVVVEISGLAP 200 + L E P Y + D++ F + V ++ + Sbjct: 521 SALYELCSKYRWEMPRYDLIEPPSLPPSKSNDNNVGEGSNVSRHSARDFVLSVHVNEVEL 580 Query: 201 AQGMDCSKRAAEQVAAAEVL 220 +G +K +A+Q A+ + L Sbjct: 581 GRGRGGTKASAKQDASRKAL 600 >gi|321454821|gb|EFX65975.1| hypothetical protein DAPPUDRAFT_263860 [Daphnia pulex] Length = 207 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 10/96 (10%) Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +I L+ + + +LS+ +++ +T +++ I S +R + Sbjct: 93 DTVILDLILDRNPELNQDQLSIFKSAITCNDTLAELVV-------ISSSEGVRALDIDY- 144 Query: 112 TSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQ 145 I AD E+LI AL +D E + Sbjct: 145 PKIYADSFEALIGALRIDCEREDREIRKVILNLMDD 180 >gi|224097532|ref|XP_002310975.1| predicted protein [Populus trichocarpa] gi|222850795|gb|EEE88342.1| predicted protein [Populus trichocarpa] Length = 1020 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 45/145 (31%), Gaps = 12/145 (8%) Query: 81 AETCSQVARELD--LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 ++ +L+ L I+ K VE L++ +G Sbjct: 879 DHNLAECFLKLNEELDKLIQKKLQDPKLDILKEGKYLMLAVEDLVSGDQCEGKFVFGRES 938 Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEIS 196 + K + K+ LQ P+YK H F +VE Sbjct: 939 RKPKVTNDNDRFTKDGANPKSLLQTLLMRAGHSPPKYKTK------HLKTNEFRALVEFK 992 Query: 197 GLAPAQGM-DCSKRAAEQVAAAEVL 220 G+ G +K+ AE+ AA E L Sbjct: 993 GMQ-FVGKPKRNKQQAERDAAIEAL 1016 >gi|228470482|ref|ZP_04055355.1| ribonuclease III [Porphyromonas uenonis 60-3] gi|228307829|gb|EEK16773.1| ribonuclease III [Porphyromonas uenonis 60-3] Length = 41 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 10/27 (37%), Positives = 15/27 (55%) Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLK 221 I G +G SK+ A+Q AA + L+ Sbjct: 1 IDGKPVGRGAGSSKKRAQQEAARDTLE 27 >gi|255638997|gb|ACU19799.1| unknown [Glycine max] Length = 168 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 12/79 (15%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI------SGLAPAQGMDCSKRA 210 A++ L E + P ++ GPDH +FT V + + + G SK+ Sbjct: 84 ARSRLYELCASYCWKPPSFECCKAEGPDHLKQFTCKVTLEIEEAQNLILEFVGEPLSKKK 143 Query: 211 --AEQVAAAEV---LKREG 224 AE AA L+ EG Sbjct: 144 DAAE-SAAEGAFWYLQHEG 161 >gi|328785633|ref|XP_003250627.1| PREDICTED: dosage compensation regulator isoform 1 [Apis mellifera] Length = 1232 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K+ +W K P++ V ++GP H RF + + G G +K+ A+ Sbjct: 3 DIKSFFHQWC-TKNSKEPQFDV-RQTGPKHRHRFLCELRVPGFDYVGAGNSTNKKDAQGN 60 Query: 215 AAAE 218 AA + Sbjct: 61 AARD 64 >gi|326679494|ref|XP_686426.4| PREDICTED: double-stranded RNA-specific editase B2 [Danio rerio] Length = 743 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 3/57 (5%) Query: 169 FGVTPEYKVTFR--SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y G F + V + G +G SK+ A++ AA L+ Sbjct: 282 LRPGLRYACLSEHAQGKRAHRSFIMAVRVDGR-IFEGSGRSKKQAKRQAAVCALQAL 337 Score = 42.0 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K L + + +Y++ ++GP H P F++ VE++GL +G + Sbjct: 125 PKNALVQL--NELRPGLQYRMVSQTGPVHAPLFSIAVEVNGLT-FEGTGPT 172 >gi|66510919|ref|XP_396525.2| PREDICTED: dosage compensation regulator isoform 2 [Apis mellifera] Length = 1239 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K+ +W K P++ V ++GP H RF + + G G +K+ A+ Sbjct: 3 DIKSFFHQWC-TKNSKEPQFDV-RQTGPKHRHRFLCELRVPGFDYVGAGNSTNKKDAQGN 60 Query: 215 AAAE 218 AA + Sbjct: 61 AARD 64 >gi|198431249|ref|XP_002129094.1| PREDICTED: similar to Zinc finger RNA-binding protein (hZFR) (M-phase phosphoprotein homolog) [Ciona intestinalis] Length = 1143 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAA 216 KT L W + P Y V G + F + ++ G SK+ A+ AA Sbjct: 345 KTFLYAWMGVRHL-RPVYDVQSI-GERPEQTFRCELRVNNYKFVGVGEAESKKEAQTEAA 402 >gi|328850732|gb|EGF99893.1| hypothetical protein MELLADRAFT_112348 [Melampsora larici-populina 98AG31] Length = 530 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 20/123 (16%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN-HFDSAK 67 LE + Y F N LL AL ++ + RLE++GD +L S ++ S + Sbjct: 385 LENILRYTFDNIHLLRYAL-----GQFGKDEFRRLEWIGDALLADWSSLVMKKIQLKSQR 439 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 + ++ L + +T + V ++ S +E++I +Y Sbjct: 440 KLKVHTASTYLNANQTLWKWWVRW-------VDPTAQELPGSKK-------LEAIIGVIY 485 Query: 128 LDG 130 +D Sbjct: 486 IDC 488 >gi|94734595|emb|CAK10842.1| novel protein similar to vertebrate adenosine deaminase, RNA-specific, B2 (ADARB2) [Danio rerio] Length = 715 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 3/57 (5%) Query: 169 FGVTPEYKVTFR--SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y G F + V + G +G SK+ A++ AA L+ Sbjct: 257 LRPGLRYACLSEHAQGKRAHRSFIMAVRVDGR-IFEGSGRSKKQAKRQAAVCALQAL 312 Score = 42.0 bits (98), Expect = 0.066, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K L + + +Y++ ++GP H P F++ VE++GL +G + Sbjct: 100 PKNALVQL--NELRPGLQYRMVSQTGPVHAPLFSIAVEVNGLT-FEGTGPT 147 >gi|46132944|ref|XP_389185.1| hypothetical protein FG09009.1 [Gibberella zeae PH-1] Length = 195 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 20/146 (13%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS------------------A 66 A+TH S + +RL LG L + + + Sbjct: 50 LAVTHKSFDQGRRGFNDRLALLGRMTLIMETTKTIVAKDPMSQPKKDKYNREPFTHPSLM 109 Query: 67 KEGELSVRFNS-LVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQADVVESLIA 124 LS + + S +A ++ L +R ++K S + + + ++I Sbjct: 110 SVDNLSTQGAKDIAGKSNLSALAADVGLIDVVRWKPRKVQKLKQSGVDVVLNGAIMAIIG 169 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKS 150 A+ L G VA + + + + Sbjct: 170 AITLQHGGVVASQVIRERILPKLQEE 195 >gi|321449205|gb|EFX61778.1| hypothetical protein DAPPUDRAFT_271900 [Daphnia pulex] Length = 203 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 15/113 (13%) Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG---KFRRD-AKTELQEWAHA 167 + AD E+LI AL D E DK ++ LK KF + LQ Sbjct: 26 PKVYADAFEALIGALRRDCERE------DKVIRKSCLKPHGRLKFHNNIPVCPLQRVNQN 79 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + PE+K D F V++++ L G S ++AE AA + Sbjct: 80 R--IKPEFK---EEKNLPDGTFHVILKVKNLQSFNGSRPSMKSAETSAAKLAI 127 >gi|315045954|ref|XP_003172352.1| hypothetical protein MGYG_04942 [Arthroderma gypseum CBS 118893] gi|311342738|gb|EFR01941.1| hypothetical protein MGYG_04942 [Arthroderma gypseum CBS 118893] Length = 156 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 52/132 (39%), Gaps = 7/132 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 R +E +GY F NR L AL + + L LG + LL+ + ++ Sbjct: 16 RAKAMEDLLGYHFKNRVLALHALNLPG-RFTSIPCHTGLAQLGKAAMELLV--ITDGYYR 72 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 ++ ++S L+ + + +A + + + + + + A +++L Sbjct: 73 GLEQDKISTIMTLLLDSSKLADIAAKKGVGRCMI----GNRSGDNLLPLYMARTIQALFG 128 Query: 125 ALYLDGGIEVAG 136 A+ +D + + Sbjct: 129 AILVDSNGDTSK 140 >gi|149582794|ref|XP_001521100.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus] Length = 173 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ +G HD RF + VE+ G +G + Sbjct: 13 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 59 >gi|126137704|ref|XP_001385375.1| hypothetical protein PICST_67997 [Scheffersomyces stipitis CBS 6054] gi|126092653|gb|ABN67346.1| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 362 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 56/215 (26%), Gaps = 51/215 (23%) Query: 46 LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA----------- 94 LG ++ ++ L + + +SL+ ET ++ + + Sbjct: 104 LGKNLMSYYVAEYLLIKYPRLPMPIHNAAVDSLMGVETLHEIGKSWGIEVDQSSKLEKYL 163 Query: 95 ----SFIRVSS---------------------DLRKDVCSFMTSIQADVVES-------L 122 F++ S A E+ + Sbjct: 164 SQESEFLKYGKLRFVSEQRKSQVKEDGVYELSQEEIASLHRNKSFVAKETEAYASAVRSI 223 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTP-EYKVTF 179 + LY G + F+ + R L + + EL P E ++ Sbjct: 224 VGGLYTHVGEDATKAFISDHILSRKLPLEQMFQFSQPTRELIRLCDKLSFTEPVEIRLIA 283 Query: 180 RSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 +G H P + +G+ S AE Sbjct: 284 ETGRLSAH-PIYVAGAFCGVEKLGEGIGSS--LAE 315 >gi|225456053|ref|XP_002277625.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1157 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 10/69 (14%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD---CSKRAAE 212 +AK LQ P YK + F V +GL A SK+ AE Sbjct: 1065 NAKGRLQTVLIRGGHQAPVYKTRQLK----NNMFRSTVIFNGLQFA---GQPCSSKKLAE 1117 Query: 213 QVAAAEVLK 221 + AAA+ L+ Sbjct: 1118 KDAAAKALE 1126 >gi|297734269|emb|CBI15516.3| unnamed protein product [Vitis vinifera] Length = 1057 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 10/69 (14%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD---CSKRAAE 212 +AK LQ P YK + F V +GL A SK+ AE Sbjct: 965 NAKGRLQTVLIRGGHQAPVYKTRQLK----NNMFRSTVIFNGLQFA---GQPCSSKKLAE 1017 Query: 213 QVAAAEVLK 221 + AAA+ L+ Sbjct: 1018 KDAAAKALE 1026 >gi|281345147|gb|EFB20731.1| hypothetical protein PANDA_008269 [Ailuropoda melanoleuca] Length = 2265 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 19/42 (45%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + + L E + + PE+ + SGPDH F V ++ Sbjct: 2224 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVNMN 2265 >gi|225556065|gb|EEH04355.1| predicted protein [Ajellomyces capsulatus G186AR] Length = 141 Score = 44.7 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 11/131 (8%) Query: 8 TLEKRIGYAFANRSLLEKAL-THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E GY F N KAL T + Q+S L +GD L L + T+ + A Sbjct: 14 KIEIATGYTFTNPVFCLKALQTAGCATAGGQKS---LAQVGDAALRLALVTIGYGK--GA 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 G++ + S + + + R + A V++++ A+ Sbjct: 69 SRGQIDSALRTKASNSHLADQGFKRGFDGCVY-----RIGGVDVSMKMMATAVQAVLGAV 123 Query: 127 YLDGGIEVAGT 137 +LD + + Sbjct: 124 FLDCNKNIYRS 134 >gi|195166832|ref|XP_002024238.1| GL14922 [Drosophila persimilis] gi|198468810|ref|XP_002134128.1| GA26573 [Drosophila pseudoobscura pseudoobscura] gi|194107611|gb|EDW29654.1| GL14922 [Drosophila persimilis] gi|198146581|gb|EDY72755.1| GA26573 [Drosophila pseudoobscura pseudoobscura] Length = 463 Score = 44.7 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 21/154 (13%) Query: 81 AETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 +T Q+ L + R + S ++ ++ +E A T + Sbjct: 306 CQTLQQICEIWHLGDYCRRKQKELRTLGNSGRAEVEPPEAQA------KRQKLEEAATAI 359 Query: 140 DKYWKQRALKSGKFRRD--------AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 ++ +S F R KT L +A P Y+ D F Sbjct: 360 TDEYEGVICRSMPFLRSTYASDNHLPKTVLYVYAGKMGKSPPAYETQQC-----DKLFRA 414 Query: 192 VVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224 + + + +K+ AEQ AA L G Sbjct: 415 ICSYDDQRYSSTFWEKNKKQAEQGAALVALLHIG 448 >gi|194895115|ref|XP_001978186.1| GG17837 [Drosophila erecta] gi|190649835|gb|EDV47113.1| GG17837 [Drosophila erecta] Length = 473 Score = 44.7 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 6/69 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 KT+L A P Y+ D F + G + + +K+ AEQ A Sbjct: 395 PKTQLYVHAGKAGKSPPAYETQQC-----DKLFRSICTFDGQRFSSSFWEKNKKQAEQGA 449 Query: 216 AAEVLKREG 224 A L G Sbjct: 450 ALVALLHLG 458 >gi|312221739|emb|CBY01679.1| hypothetical protein [Leptosphaeria maculans] Length = 267 Score = 44.7 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 34/144 (23%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---------------------HF 63 A+TH S H + +RL +LG RI+ L + L Sbjct: 117 LAVTHKSFDHGRRGFNDRLAYLGRRIVELQTAQALIKSPQETQWPRDSNDIPMPDEFGRK 176 Query: 64 DSAKE-----GELSVRFNSLV-SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ S+V S + SQ+A L K S M ++ Sbjct: 177 PYLHPALNGLQGLTDEAESVVLSQKRLSQLAERYGLDK-------ADKLQDSGMEAVLIT 229 Query: 118 VVESLIAALYLDGGIEVAGTFVDK 141 + +++ A+ L+ G +VA V + Sbjct: 230 SLYAIVGAIALERGGQVANKIVQE 253 >gi|290462563|gb|ADD24329.1| Double-stranded RNA-specific editase 1 [Lepeophtheirus salmonis] Length = 296 Score = 44.7 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 7/77 (9%) Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + L R L E + GV Y + P F + V + G +G Sbjct: 216 KKLPDNPTERHPVQLLNEI---QGGVN--YALVREK-PTTPVIFVMSVTVDG-VTFEGEG 268 Query: 206 CSKRAAEQVAAAEVLKR 222 +K+ A++ A LK+ Sbjct: 269 KNKKDAKRNCALAALKK 285 >gi|50251545|dbj|BAD28919.1| hypothetical protein [Oryza sativa Japonica Group] gi|50253009|dbj|BAD29259.1| hypothetical protein [Oryza sativa Japonica Group] gi|125605702|gb|EAZ44738.1| hypothetical protein OsJ_29369 [Oryza sativa Japonica Group] Length = 122 Score = 44.7 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 8/68 (11%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-------DCSKRAAE 212 L + A P Y GP H FT V I + + SK+AA+ Sbjct: 46 RLHKICSATHWKEPSYDF-EEQGPSHLKLFTCKVTIHVDTFTTTIVECISEPNRSKKAAQ 104 Query: 213 QVAAAEVL 220 + AA L Sbjct: 105 EHAAQGAL 112 >gi|67903614|ref|XP_682063.1| hypothetical protein AN8794.2 [Aspergillus nidulans FGSC A4] gi|40741397|gb|EAA60587.1| hypothetical protein AN8794.2 [Aspergillus nidulans FGSC A4] gi|259483000|tpe|CBF78007.1| TPA: RNase III domain protein (AFU_orthologue; AFUA_5G09670) [Aspergillus nidulans FGSC A4] Length = 246 Score = 44.7 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 9/128 (7%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLI--STLLFNHFDSAKEG-----ELSV-RFN 76 A+TH S + +RL FL + + LS+ Sbjct: 109 LAVTHKSFDQGRRGFNDRLAFLAQSASNSYGQPAPDRYGRKPFEHPALNGLENLSINTKR 168 Query: 77 SLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 L ++VAR+ DL +R S + + A + +LI AL L+ G VA Sbjct: 169 FLTDKSKLAEVARQYDLEKVLRWCPRKPTNLEASGVEVVLAHTLYALIGALSLEKGNLVA 228 Query: 136 GTFVDKYW 143 + Sbjct: 229 NKVARERI 236 >gi|195339009|ref|XP_002036114.1| r2d2 [Drosophila sechellia] gi|194129994|gb|EDW52037.1| r2d2 [Drosophila sechellia] Length = 311 Score = 44.7 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + L E+ P Y G D F VE+ + A G SKR A+ Sbjct: 3 NKSAVSALHEFCAKTKNTPPTYNFIN--GEDGG--FVCKVELLEIE-ALGNGRSKRDAKH 57 Query: 214 VAAAEVLKR 222 +AAA ++++ Sbjct: 58 LAAANIMRK 66 Score = 42.8 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217 EL+++ P +V +SG P F ++ + S K+ A Q AA Sbjct: 99 ELRDYCVRHDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDARQRAAI 155 Query: 218 EVL 220 E+L Sbjct: 156 EML 158 >gi|281206201|gb|EFA80390.1| putative RNA helicase [Polysphondylium pallidum PN500] Length = 804 Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 19/47 (40%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +++ GP H P F + ++ SK+ AE + + L Sbjct: 737 KFETKHVGGPPHQPEFICDLYLNNELKETCKGSSKKDAEDKVSRQAL 783 >gi|224140399|ref|XP_002323570.1| predicted protein [Populus trichocarpa] gi|222868200|gb|EEF05331.1| predicted protein [Populus trichocarpa] Length = 563 Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 4/44 (9%) Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V G R V +G GM +++ A+Q AA L Sbjct: 461 VLQEIG----RRCRSKVLFTGEKIGVGMGKTRKDAQQQAAENAL 500 >gi|328724252|ref|XP_003248081.1| PREDICTED: dosage compensation regulator-like [Acyrthosiphon pisum] Length = 190 Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 + K L EW AK + P+++ ++G + RF V + G G +K+ A+ Sbjct: 3 NPKAFLHEWC-AKNNLEPQFE-IKQAGSKFNLRFICEVTVGGHNYVGVGNSTNKKDAQGN 60 Query: 215 AAAEVL 220 A+ + L Sbjct: 61 ASKDYL 66 >gi|113200881|gb|ABI32401.1| dicer [Gallus gallus] Length = 73 Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 7/72 (9%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S R EL E +P + +D + V VE+ G +G+ S R Sbjct: 1 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 53 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 54 IAKSAAARRALR 65 >gi|82469800|gb|ABB77158.1| R2D2 [Drosophila biarmipes] Length = 302 Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217 EL+++ P ++ + G + P F ++ + S K+ A Q AA Sbjct: 90 ELRDYCVRHEMPLPTIEIVQQCGTPNAPEFVACCSVASIVR---YGKSDKKKDARQRAAI 146 Query: 218 EVL 220 E+L Sbjct: 147 EML 149 Score = 39.3 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + P Y G D V + A G SKR A+ +AAA +L++ Sbjct: 1 FCAKSKNIPPTYDFID--GEDGGYVCKVELM---EIEAYGNGRSKRDAKHLAAANILRK 54 >gi|242056673|ref|XP_002457482.1| hypothetical protein SORBIDRAFT_03g008040 [Sorghum bicolor] gi|241929457|gb|EES02602.1| hypothetical protein SORBIDRAFT_03g008040 [Sorghum bicolor] Length = 1390 Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 26/145 (17%) Query: 96 FIRVSSDLRK--DVCSFMTSIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGK 152 ++ + S+L + E L++A+ L + FV + R+ K+ Sbjct: 1213 YLSLKSELENLIHCKLQNPRMNIQTSEELLSAIRLLVTEDPCSGRFVYGRQEPRSKKAKT 1272 Query: 153 FRR-------------DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 +AK +LQ + P YK F VE +G+ Sbjct: 1273 MFSPSSMSGGGGNGGDNAKNQLQTFLTRAGHSNPTYKTKQIK----SYLFRSTVEFNGMQ 1328 Query: 200 PAQGMD---CSKRAAEQVAAAEVLK 221 + +K+ AE+ AA+E L Sbjct: 1329 F---VGQPCANKKLAEKDAASEALN 1350 >gi|239611792|gb|EEQ88779.1| 60S ribosomal protein L3 [Ajellomyces dermatitidis ER-3] Length = 343 Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 62/210 (29%), Gaps = 57/210 (27%) Query: 1 MSALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 +++ + S + R+ L L + L S + Q + + L LG +L S Sbjct: 117 LNSAKLSAIHARLSL-PQRLPLQTLARTLVDESADPTPQFNNKSLSILGGDLLTYYTSEY 175 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA--------------SFIRV----- 99 L + + L S + A+ + + RE L F R+ Sbjct: 176 LISTYPRLPVKVLWAAMYSYIGAKPLAAMTREWGLEFAAEPGPEVDPGLLQFKRLPPDTV 235 Query: 100 ------SSDLRKDVCSFMTS-----IQADVV------------------------ESLIA 124 + LR+D S I D +++ Sbjct: 236 VETNSNGTFLRRDGGVSKRSTSARIIYGDAFGESALPYPVHHEGVTPNRACANFVRAIVG 295 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR 154 A+YL G A F +++ R L Sbjct: 296 AVYLHAGRPAAKQFYKEHFTSRHLDMASLF 325 >gi|73963942|ref|XP_868518.1| PREDICTED: similar to dicer1 isoform 2 [Canis familiaris] Length = 63 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 19/37 (51%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +D + V VE+ G +G+ S R A+ AA L+ Sbjct: 15 YDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALR 51 >gi|302698141|ref|XP_003038749.1| hypothetical protein SCHCODRAFT_64720 [Schizophyllum commune H4-8] gi|300112446|gb|EFJ03847.1| hypothetical protein SCHCODRAFT_64720 [Schizophyllum commune H4-8] Length = 278 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 52/139 (37%), Gaps = 12/139 (8%) Query: 19 NRSLLEKALTHSSISH-----SYQESY---ERLEFLGDRILGLLISTLLFNHFDS--AKE 68 + +L TH S+ + Y RL +G+R+L L ++ ++ Sbjct: 13 DLEILMDVFTHDSLKEDDELTHMNDDYGNTARLREIGERVLDLAVTFHYYSDRQDGVLAA 72 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 ++ R +S + + +L I+ + R+ + D + + A+Y+ Sbjct: 73 DQIVARRREALSDDRINHWMDAYELKGKIKAAPSERQA-ARSSPQV-NDFFKKYVGAIYI 130 Query: 129 DGGIEVAGTFVDKYWKQRA 147 G+ V T++ + A Sbjct: 131 RQGMGVIQTWISRLLNPDA 149 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + G Y+ ++GP H P ++V ++G G S++ A+++AA E +R G Sbjct: 218 QKGFAVNYEA-SQTGPPHAPTWSVRCLLNGTEYGTGTGTSQKKAKELAAQEAWERLG 273 >gi|332229491|ref|XP_003263921.1| PREDICTED: protein SON isoform 1 [Nomascus leucogenys] Length = 2426 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2415 >gi|312375539|gb|EFR22895.1| hypothetical protein AND_14041 [Anopheles darlingi] Length = 512 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 9/79 (11%) Query: 151 GKFRRD---AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDC 206 F +D KT+L +A +Y+V + D F ++E G + + Sbjct: 383 ANFPQDNELPKTKLFLYARRNNLELAQYEVQQK-----DKLFKGIIEFDGKRYSSTFWEK 437 Query: 207 SKRAAEQVAAAEVLKREGI 225 SKR AEQ AA L + G+ Sbjct: 438 SKRFAEQAAALVCLVQLGV 456 >gi|300121933|emb|CBK22507.2| unnamed protein product [Blastocystis hominis] Length = 103 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 22/43 (51%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 H+ RF V ++ + +G S + A AA + L+ G+++ Sbjct: 57 HENRFHVRAKVDDVLVGEGTGSSVKIATSYAAWKGLEALGVYS 99 >gi|281332168|ref|NP_001163798.1| SON DNA-binding protein isoform 1 [Rattus norvegicus] Length = 2446 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 2390 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2435 >gi|229220869|gb|ACQ45368.1| SON DNA-binding protein isoform F (predicted), 3 prime [Dasypus novemcinctus] Length = 2012 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 1956 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2001 >gi|224125268|ref|XP_002329763.1| predicted protein [Populus trichocarpa] gi|222870825|gb|EEF07956.1| predicted protein [Populus trichocarpa] Length = 224 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 19/36 (52%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ +G +G ++R A++ AA +K+ Sbjct: 20 QFSIEAWFAGEKVGEGTGKTRREAQRQAAEGSIKKL 55 Score = 38.5 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 14/33 (42%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 VEI G +G+ + A+ AA + L Sbjct: 138 EVHAQVEIDGQVLGKGIGSTWDEAKMQAAEKAL 170 >gi|218456207|gb|ACK77499.1| SON DNA-binding protein isoform F (predicted) [Oryctolagus cuniculus] Length = 2402 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 2346 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2391 >gi|218202148|gb|EEC84575.1| hypothetical protein OsI_31370 [Oryza sativa Indica Group] Length = 180 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 8/68 (11%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-------DCSKRAAE 212 L + A P Y GP H FT V I + SK+AA+ Sbjct: 104 RLHKICSATHWKEPSYDF-EEQGPSHLKLFTCKVTIHVDTFTTTIVECISEPKRSKKAAQ 162 Query: 213 QVAAAEVL 220 + AA L Sbjct: 163 EHAAQGAL 170 >gi|204305650|gb|ACG63674.2| SON DNA-binding protein isoform F (predicted) [Otolemur garnettii] Length = 2411 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 2355 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2400 >gi|194226216|ref|XP_001915595.1| PREDICTED: similar to SON DNA binding protein, isoform f (predicted) [Equus caballus] Length = 2426 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2415 >gi|195034168|ref|XP_001988838.1| GH10357 [Drosophila grimshawi] gi|193904838|gb|EDW03705.1| GH10357 [Drosophila grimshawi] Length = 317 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 5/78 (6%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 ++A + RD EL+++ + P ++ +SG P F ++ + Sbjct: 91 KKAEELTNMNRDMLKELRDYCVRQDMPLPTIEIVQQSGTPSAPEFVACCSVASIKR---Y 147 Query: 205 DCS--KRAAEQVAAAEVL 220 S K+ A Q AA E+L Sbjct: 148 GKSDKKKDARQRAAIEML 165 Score = 41.6 bits (97), Expect = 0.084, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 7/66 (10%) Query: 159 TELQEWAHAKFGVTPEYK-VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + LQE+ P Y + G + V + + A G SKR A+ +AA Sbjct: 8 SALQEFCSQAKTGNPFYDYIDGEEGG-----YICKVVLMDVE-AYGNGRSKRDAKHLAAT 61 Query: 218 EVLKRE 223 ++++ Sbjct: 62 NIMRKL 67 >gi|189908181|gb|ACE60213.1| SON protein (predicted) [Sorex araneus] Length = 1825 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 1769 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 1814 >gi|177773079|gb|ACB73274.1| SON DNA-binding protein isoform F (predicted) [Rhinolophus ferrumequinum] Length = 2432 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 2376 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2421 >gi|169246083|gb|ACA51060.1| SON DNA-binding protein isoform F (predicted) [Callicebus moloch] Length = 2422 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 2366 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2411 >gi|281183286|ref|NP_001162514.1| protein SON [Papio anubis] gi|159487307|gb|ABW97197.1| SON DNA binding protein, isoform f (predicted) [Papio anubis] Length = 2426 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2415 >gi|149637430|ref|XP_001513874.1| PREDICTED: similar to NREBP [Ornithorhynchus anatinus] Length = 2213 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 2157 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2202 >gi|148671870|gb|EDL03817.1| Son cell proliferation protein, isoform CRA_a [Mus musculus] Length = 2451 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 2395 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2440 >gi|126325255|ref|XP_001365912.1| PREDICTED: similar to interleukin-16 isoform 1 [Monodelphis domestica] Length = 2421 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 2365 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2410 >gi|124358955|ref|NP_849211.3| protein SON [Mus musculus] Length = 2444 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 2388 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2433 >gi|114683934|ref|XP_001165903.1| PREDICTED: similar to NREBP isoform 8 [Pan troglodytes] Length = 2388 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 2332 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2377 >gi|114683948|ref|XP_001165838.1| PREDICTED: SON DNA-binding protein isoform 6 [Pan troglodytes] Length = 2233 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 2177 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2222 >gi|114683932|ref|XP_001165975.1| PREDICTED: protein SON isoform 9 [Pan troglodytes] Length = 2426 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2415 >gi|74001163|ref|XP_857478.1| PREDICTED: similar to SON protein (SON3) (Negative regulatory element-binding protein) (NRE-binding protein) (DBP-5) (Bax antagonist selected in saccharomyces 1) (BASS1) isoform 21 [Canis familiaris] Length = 2415 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 2359 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2404 >gi|74001129|ref|XP_856774.1| PREDICTED: similar to SON protein (SON3) (Negative regulatory element-binding protein) (NRE-binding protein) (DBP-5) (Bax antagonist selected in saccharomyces 1) (BASS1) isoform 5 [Canis familiaris] Length = 2431 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 2375 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2420 >gi|74001161|ref|XP_857437.1| PREDICTED: similar to SON DNA-binding protein isoform G isoform 20 [Canis familiaris] Length = 2393 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 2337 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2382 >gi|74001149|ref|XP_857186.1| PREDICTED: similar to SON DNA-binding protein isoform G isoform 14 [Canis familiaris] Length = 1320 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 1264 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 1309 >gi|74001151|ref|XP_857233.1| PREDICTED: similar to SON DNA-binding protein isoform G isoform 15 [Canis familiaris] Length = 1425 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 1369 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 1414 >gi|14571500|gb|AAK07692.1| NREBP [Homo sapiens] Length = 2386 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 2330 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2375 >gi|20139953|sp|Q9QX47|SON_MOUSE RecName: Full=Protein SON gi|6671176|gb|AAF23120.1| SON protein [Mus musculus] Length = 2404 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 2348 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2393 >gi|41058336|gb|AAR99160.1| dsRNA-binding protein [Solanum lycopersicum] Length = 318 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 19/49 (38%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P+Y+ FT V++ G+ +K+ AE AA L Sbjct: 1 IPQYECERYDSESKIISFTCTVDVGGMKYIGAAARTKKEAEIKAARTAL 49 >gi|289616346|emb|CBI56873.1| unnamed protein product [Sordaria macrospora] Length = 365 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 54/146 (36%), Gaps = 26/146 (17%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLIST---------------LLFNHFDSAKEG 69 A+TH S + + RL FLG +I+ L + ++ A Sbjct: 221 LAVTHKSFDYGRRGYNTRLAFLGRQIIALETTRSILTSPVLNEPAADKYGRQPYNHAALA 280 Query: 70 ELSVRFNS----LVSAETCSQVARELDLASFI----RVSSDLRKDVCSFMTSIQADVVES 121 + ++ ++ +++ +L L + + R+ DL + + + + Sbjct: 281 NIDKLIHTQPIDIMDKTKIARMGIDLGLLTVLRWKPRMPEDLESSG---VVVVLNSTLFA 337 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA 147 +I A+ L+ G VA V + ++ Sbjct: 338 IIGAISLEKGAAVAQRIVREKILKKL 363 >gi|255722579|ref|XP_002546224.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240136713|gb|EER36266.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 561 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 T S + S E L+FLG + I + F + L+ N L S + ++ Sbjct: 194 TSKSCNESVSSKSENLQFLGKSFMATCIGFVFEKSFIHVNQQSLTYLRNKLTSESSLAKF 253 Query: 88 ARELD 92 R+LD Sbjct: 254 FRDLD 258 >gi|256092860|ref|XP_002582095.1| ATP-dependent RNA Helicase [Schistosoma mansoni] gi|238804738|emb|CAZ39195.1| ATP-dependent RNA Helicase, putative [Schistosoma mansoni] Length = 1289 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 4/71 (5%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAA 216 K+ L + K + PEY + + RF G G +K+ A+ AA Sbjct: 8 KSFLYTFLQTKKRIAPEYTFIEKPVGRNKVRFLCEARADGFNYVGIGNSTTKKEAQTNAA 67 Query: 217 AEV---LKREG 224 + L REG Sbjct: 68 RDFVNYLVREG 78 >gi|198427128|ref|XP_002120497.1| PREDICTED: similar to tRNA-dihydrouridine synthase 2-like (hDUS2) (Up-regulated in lung cancer) (URLC8) [Ciona intestinalis] Length = 482 Score = 44.3 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAE 212 K+ L EWA +K P Y + R D RF +V++ G + +KR AE Sbjct: 415 PKSILLEWARSKGIKEPVYTTSCRE---SDRRFCSIVKVDGRKYTNTFWERNKRLAE 468 >gi|293334643|ref|NP_001168634.1| hypothetical protein LOC100382420 [Zea mays] gi|223949721|gb|ACN28944.1| unknown [Zea mays] Length = 623 Score = 44.3 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 16/35 (45%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F+V V + G+ ++ A+ AA + L+ Sbjct: 566 FSVEVLFNNEKIGIGVGKTRDEAQVQAAEKALQNL 600 >gi|320583778|gb|EFW97991.1| Mitochondrial ribosomal protein of the large subunit [Pichia angusta DL-1] Length = 237 Score = 44.3 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 22/156 (14%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS---- 56 + S L+ + Y ++ LL + +TH S +H Q RL + G ++ L + Sbjct: 68 LKTFLQSKLQGK--YELPDK-LLLQIITHKSFAHGTQPYNARLSYFGRELIQLSAAKYAI 124 Query: 57 ------TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA----SFIRVSSDLRKD 106 N+ + G + + + + + A +L + + S D Sbjct: 125 TRSTNNEYAINNLNFDSLGSYTQ--SLMKTDRLLKEYAVVNNLDAVFFRRLALPSGKEDD 182 Query: 107 VCSFMTS-IQADVVESLIAALYLDGGIEVAGTFVDK 141 ++ I + + SL+ A+ G + A F++K Sbjct: 183 --NYKPKAIWSTLTASLVGAIASQHGKKAAEEFIEK 216 >gi|208690881|gb|ACI31216.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Gorilla gorilla] Length = 551 Score = 44.3 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 L K +T Y+ + GP+ F ++ + G +K+ A+Q+AA Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160 Query: 219 V 219 Sbjct: 161 A 161 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 19/41 (46%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV +Y+ SGP HD RFT V I +G S Sbjct: 19 QKQGVVLKYQELPNSGPPHDRRFTFRVIIDEREFPEGEGRS 59 >gi|108711083|gb|ABF98878.1| Helicase associated domain family protein, expressed [Oryza sativa Japonica Group] Length = 1138 Score = 44.3 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 10/72 (13%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGM-DCSK 208 K + K+ LQ P+YK H F +VE G+ A G +K Sbjct: 1031 KDGMNPKSLLQTLLMRAGHTPPKYKTK------HLKTNEFRAIVEFKGMQFA-GKPKRNK 1083 Query: 209 RAAEQVAAAEVL 220 + AE+ AA E L Sbjct: 1084 QLAERDAAIEAL 1095 >gi|218187401|gb|EEC69828.1| hypothetical protein OsI_00149 [Oryza sativa Indica Group] Length = 1680 Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 10/69 (14%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD---CSKRAAE 212 +AK +LQ P YK + F VE +G+ + +K+ AE Sbjct: 1583 NAKNQLQTLLTRAGHDNPSYKTKQIK----NSLFRSTVEFNGMQF---VGQPCANKKLAE 1635 Query: 213 QVAAAEVLK 221 + AA E L Sbjct: 1636 KDAAGEALN 1644 >gi|158340517|ref|YP_001521511.1| hypothetical protein AM1_C0062 [Acaryochloris marina MBIC11017] gi|158310758|gb|ABW32372.1| hypothetical protein AM1_C0062 [Acaryochloris marina MBIC11017] Length = 144 Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 6/66 (9%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S + LQE + P Y+ F P+ F +V GL G SK+ Sbjct: 78 SADVVENPIGALQELCQRQQISMPRYE--FEVIPEG---FRCLVLAMGLR-GVGEGRSKK 131 Query: 210 AAEQVA 215 A+ +A Sbjct: 132 QAKVMA 137 >gi|218193752|gb|EEC76179.1| hypothetical protein OsI_13511 [Oryza sativa Indica Group] Length = 1150 Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 10/72 (13%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGM-DCSK 208 K + K+ LQ P+YK H F +VE G+ A G +K Sbjct: 1043 KDGMNPKSLLQTLLMRAGHTPPKYKTK------HLKTNEFRAIVEFKGMQFA-GKPKRNK 1095 Query: 209 RAAEQVAAAEVL 220 + AE+ AA E L Sbjct: 1096 QLAERDAAIEAL 1107 >gi|240256018|ref|NP_193824.4| double-stranded RNA binding [Arabidopsis thaliana] gi|332658976|gb|AEE84376.1| double-stranded RNA-binding domain (DsRBD)-containing protein [Arabidopsis thaliana] Length = 743 Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E KFGV Y++ +D + +++ + + K+ +EQ AA L++ Sbjct: 13 EMILQKFGVKAIYRIEEVHVSSNDCLYRCHLQLPEFSVVSNVFKRKKDSEQSAAELALEK 72 Query: 223 EGI 225 GI Sbjct: 73 LGI 75 >gi|222625798|gb|EEE59930.1| hypothetical protein OsJ_12573 [Oryza sativa Japonica Group] Length = 966 Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 10/72 (13%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGM-DCSK 208 K + K+ LQ P+YK H F +VE G+ A G +K Sbjct: 859 KDGMNPKSLLQTLLMRAGHTPPKYKTK------HLKTNEFRAIVEFKGMQFA-GKPKRNK 911 Query: 209 RAAEQVAAAEVL 220 + AE+ AA E L Sbjct: 912 QLAERDAAIEAL 923 >gi|167756029|ref|ZP_02428156.1| hypothetical protein CLORAM_01549 [Clostridium ramosum DSM 1402] gi|237734014|ref|ZP_04564495.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167704021|gb|EDS18600.1| hypothetical protein CLORAM_01549 [Clostridium ramosum DSM 1402] gi|229382840|gb|EEO32931.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 125 Score = 44.3 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 8/108 (7%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97 L +LGD I +L+ L K +L VSA + + ++ F Sbjct: 11 LAYLGDSIFEVLVRDYLVKESGFVKPNDLQREAVKYVSASSHAAFMHDMLDEEFFSADEV 70 Query: 98 ---RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 + + + + + + E++I LYL+ + ++Y Sbjct: 71 GTYKRGRNTKGSKNESLDHMHSTGFEAVIGTLYLEENFDRIKVIFERY 118 >gi|297799968|ref|XP_002867868.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297313704|gb|EFH44127.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 854 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E H KFG Y++ ++ + +++ + + K+ +EQ AA L++ Sbjct: 13 EIIHQKFGDKAIYRIEEVHVSSNECLYRCHLQLPEFSVVSNVFKRKKDSEQSAAELALEK 72 Query: 223 EGI 225 GI Sbjct: 73 LGI 75 >gi|222617638|gb|EEE53770.1| hypothetical protein OsJ_00159 [Oryza sativa Japonica Group] Length = 1700 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 10/69 (14%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD---CSKRAAE 212 +AK +LQ P YK + F VE +G+ + +K+ AE Sbjct: 1603 NAKNQLQTLLTRAGHDNPSYKTKQIK----NSLFRSTVEFNGMQF---VGQPCANKKLAE 1655 Query: 213 QVAAAEVLK 221 + AA E L Sbjct: 1656 KDAAGEALN 1664 >gi|146260811|gb|ABQ14708.1| adenosine deaminase [Bombyx mori] Length = 570 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%) Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H RF VV +I +G SK+ A+ AA L Sbjct: 162 AHSMRFKVVCQIKEQK-FEGYGSSKKLAKLAAARSAL 197 Score = 43.5 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%) Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H P FTV V ++ +G SKR A AA L Sbjct: 13 AHCPSFTVAVNVAD-MTFEGWGHSKREARASAARVCL 48 >gi|119630221|gb|EAX09816.1| SON DNA binding protein, isoform CRA_c [Homo sapiens] Length = 2426 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + + L E + + PE+ + SGPDH F V +G Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNG 2412 >gi|21040326|ref|NP_620305.1| protein SON isoform F [Homo sapiens] gi|296453022|sp|P18583|SON_HUMAN RecName: Full=Protein SON; AltName: Full=Bax antagonist selected in saccharomyces 1; Short=BASS1; AltName: Full=Negative regulatory element-binding protein; Short=NRE-binding protein; AltName: Full=Protein DBP-5; AltName: Full=SON3 Length = 2426 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + + L E + + PE+ + SGPDH F V +G Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNG 2412 >gi|17046383|gb|AAL34502.1|AF380184_1 SON DNA binding protein isoform F [Homo sapiens] Length = 2426 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + + L E + + PE+ + SGPDH F V +G Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNG 2412 >gi|47225151|emb|CAF98778.1| unnamed protein product [Tetraodon nigroviridis] Length = 812 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F + V + G +G SK+ A+ AA L+ Sbjct: 287 RSFVMAVRVDGR-IFEGCGRSKKLAKNQAAQCALRAL 322 Score = 41.6 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K L + + +Y + ++GP H P F++ VE++GL +G + Sbjct: 101 PKNALVQL--NELRPGLQYHMVSQTGPVHAPVFSIAVEVNGLT-FEGTGPT 148 >gi|18087663|gb|AAL58955.1|AC091811_4 putative helicase [Oryza sativa Japonica Group] Length = 1121 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 10/72 (13%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGM-DCSK 208 K + K+ LQ P+YK H F +VE G+ A G +K Sbjct: 1014 KDGMNPKSLLQTLLMRAGHTPPKYKTK------HLKTNEFRAIVEFKGMQFA-GKPKRNK 1066 Query: 209 RAAEQVAAAEVL 220 + AE+ AA E L Sbjct: 1067 QLAERDAAIEAL 1078 >gi|111025395|ref|YP_707815.1| exoribonuclease II [Rhodococcus jostii RHA1] gi|110824374|gb|ABG99657.1| probable exoribonuclease II [Rhodococcus jostii RHA1] Length = 615 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 2/54 (3%) Query: 164 WAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 W A P ++ GP H P F + + SK+ AEQ AA Sbjct: 422 WLQAH-PDLPRPEIDGDNRGPSHTPVFAARFRVGQVCGPWATAGSKKRAEQDAA 474 Score = 38.5 bits (89), Expect = 0.80, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +P++ V G H P FT V A G +K A AAA++ Sbjct: 551 HGHPSPQW-VVRMEGAAHAPVFTCDVRYLDHT-ATGSGTTKNLARTAAAADL 600 >gi|5262782|emb|CAB45887.1| putative protein [Arabidopsis thaliana] gi|7268889|emb|CAB79092.1| putative protein [Arabidopsis thaliana] Length = 870 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E KFGV Y++ +D + +++ + + K+ +EQ AA L++ Sbjct: 13 EMILQKFGVKAIYRIEEVHVSSNDCLYRCHLQLPEFSVVSNVFKRKKDSEQSAAELALEK 72 Query: 223 EGI 225 GI Sbjct: 73 LGI 75 >gi|74001147|ref|XP_857143.1| PREDICTED: similar to SON protein isoform 13 [Canis familiaris] Length = 358 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 302 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 347 >gi|116200546|ref|XP_001226085.1| hypothetical protein CHGG_10818 [Chaetomium globosum CBS 148.51] gi|88175532|gb|EAQ83000.1| hypothetical protein CHGG_10818 [Chaetomium globosum CBS 148.51] Length = 402 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 9/130 (6%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF------NSL 78 A+TH S + RL + + + F +V + Sbjct: 273 LAITHKSFDQGRRGFNTRLAYFANA--RDPPTQDSFGREPFQDPALANVDKLNVKQPMDV 330 Query: 79 VSAETCSQVARELDLASFIRVSSDL-RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 VS + +++A ++ L R + S +T++ + ++I A+ L G EVA Sbjct: 331 VSKDKLAKLAIDVGLPEVTRWKPRMPEHLEGSGLTAVLNTSLFAIIGAISLQHGAEVAQQ 390 Query: 138 FVDKYWKQRA 147 V + +R Sbjct: 391 VVREKILRRL 400 >gi|297852484|ref|XP_002894123.1| helicase domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297339965|gb|EFH70382.1| helicase domain-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 1197 Score = 43.9 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 10/66 (15%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC---SKRAAEQV 214 K +LQ +P YK + +F +V +GL M SK+ AE+ Sbjct: 1102 KNQLQTLLARAGHGSPVYKTRQLK----NNQFRAMVTFNGLDF---MGKPCGSKKNAEKD 1154 Query: 215 AAAEVL 220 AA E L Sbjct: 1155 AAHEAL 1160 >gi|74001139|ref|XP_856976.1| PREDICTED: similar to SON protein isoform 10 [Canis familiaris] gi|74001143|ref|XP_857061.1| PREDICTED: similar to SON protein isoform 11 [Canis familiaris] gi|26330460|dbj|BAC28960.1| unnamed protein product [Mus musculus] Length = 119 Score = 43.9 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 63 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 108 >gi|224576553|gb|ACN56950.1| At1g01040-like protein [Capsella rubella] gi|224576555|gb|ACN56951.1| At1g01040-like protein [Capsella rubella] gi|224576557|gb|ACN56952.1| At1g01040-like protein [Capsella rubella] gi|224576559|gb|ACN56953.1| At1g01040-like protein [Capsella rubella] gi|224576561|gb|ACN56954.1| At1g01040-like protein [Capsella rubella] gi|224576563|gb|ACN56955.1| At1g01040-like protein [Capsella rubella] gi|224576565|gb|ACN56956.1| At1g01040-like protein [Capsella rubella] gi|224576567|gb|ACN56957.1| At1g01040-like protein [Capsella rubella] gi|224576569|gb|ACN56958.1| At1g01040-like protein [Capsella rubella] gi|224576571|gb|ACN56959.1| At1g01040-like protein [Capsella rubella] gi|224576573|gb|ACN56960.1| At1g01040-like protein [Capsella rubella] gi|224576575|gb|ACN56961.1| At1g01040-like protein [Capsella rubella] gi|224576577|gb|ACN56962.1| At1g01040-like protein [Capsella rubella] gi|224576583|gb|ACN56965.1| At1g01040-like protein [Capsella grandiflora] gi|224576585|gb|ACN56966.1| At1g01040-like protein [Capsella grandiflora] gi|224576587|gb|ACN56967.1| At1g01040-like protein [Capsella grandiflora] gi|224576593|gb|ACN56970.1| At1g01040-like protein [Capsella grandiflora] gi|224576595|gb|ACN56971.1| At1g01040-like protein [Capsella grandiflora] gi|224576597|gb|ACN56972.1| At1g01040-like protein [Capsella grandiflora] gi|224576599|gb|ACN56973.1| At1g01040-like protein [Capsella grandiflora] gi|224576603|gb|ACN56975.1| At1g01040-like protein [Capsella grandiflora] gi|224576605|gb|ACN56976.1| At1g01040-like protein [Capsella grandiflora] Length = 180 Score = 43.9 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 52/142 (36%) Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------- 98 ++S LF + EG+L+ +VS Q A L S+I+ Sbjct: 1 WVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGV 60 Query: 99 --------------------VSS--------DLRKDV------CSFM---TSIQADVVES 121 +S +D S+ + ADVVE+ Sbjct: 61 PPVFDEDTKESSFFDEEQKPLSKENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYW 143 LI Y++GG ++A + + Sbjct: 121 LIGVYYVEGG-KIAANHLMTWI 141 >gi|297667845|ref|XP_002812174.1| PREDICTED: interferon-induced, double-stranded RNA-activated protein kinase [Pongo abelii] Length = 510 Score = 43.9 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 18/41 (43%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV Y+ SGP HD RFT V I G + S Sbjct: 19 QKQGVVLRYQELPNSGPPHDRRFTFRVIIDGREFPEAEGRS 59 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 7/31 (22%), Positives = 14/31 (45%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 F ++ + G +K+ A+Q+AA Sbjct: 131 FHYKCKMGQKEYSIGTGSTKQEAKQLAAKFA 161 >gi|195147974|ref|XP_002014949.1| GL19450 [Drosophila persimilis] gi|194106902|gb|EDW28945.1| GL19450 [Drosophila persimilis] Length = 398 Score = 43.9 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 11/74 (14%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ + L E+ TP+Y+ + + F+ VE+ + G SK++A Sbjct: 3 DQNFVSYLVEFCVKLKLNTPKYRFVTEA----NREFSCNVELQDIQ-GYGRARSKQSAAH 57 Query: 214 VAAAEVLKREGIWT 227 VAA +WT Sbjct: 58 VAARN------VWT 65 >gi|224576609|gb|ACN56978.1| At1g01040-like protein [Capsella grandiflora] Length = 180 Score = 43.9 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 52/142 (36%) Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------- 98 ++S LF + EG+L+ +VS Q A L S+I+ Sbjct: 1 WVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGV 60 Query: 99 --------------------VSS--------DLRKDV------CSFM---TSIQADVVES 121 +S +D S+ + ADVVE+ Sbjct: 61 PPVFDEDTKESSFFDEEQKPLSKEXSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYW 143 LI Y++GG ++A + + Sbjct: 121 LIGVYYVEGG-KIAANHLMTWI 141 >gi|53791439|dbj|BAD52491.1| putative DEAD/H box polypeptide 36 protein [Oryza sativa Japonica Group] Length = 1063 Score = 43.9 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 10/69 (14%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD---CSKRAAE 212 +AK +LQ P YK + F VE +G+ + +K+ AE Sbjct: 966 NAKNQLQTLLTRAGHDNPSYKTKQIK----NSLFRSTVEFNGMQF---VGQPCANKKLAE 1018 Query: 213 QVAAAEVLK 221 + AA E L Sbjct: 1019 KDAAGEALN 1027 >gi|208690883|gb|ACI31217.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pongo pygmaeus pygmaeus] Length = 551 Score = 43.9 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 18/41 (43%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV Y+ SGP HD RFT V I G + S Sbjct: 19 QKQGVVLRYQELPNSGPPHDRRFTFRVIIDGREFPEAEGRS 59 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 7/31 (22%), Positives = 14/31 (45%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 F ++ + G +K+ A+Q+AA Sbjct: 131 FHYKCKMGQKEYSIGTGSTKQEAKQLAAKFA 161 >gi|55730356|emb|CAH91900.1| hypothetical protein [Pongo abelii] Length = 512 Score = 43.9 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 18/41 (43%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV Y+ SGP HD RFT V I G + S Sbjct: 19 QKQGVVLRYQELPNSGPPHDRRFTFRVIIDGREFPEAEGRS 59 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 7/31 (22%), Positives = 14/31 (45%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 F ++ + G +K+ A+Q+AA Sbjct: 131 FHYKCKMGQKEYSIGTGSTKQEAKQLAAKFA 161 >gi|170055796|ref|XP_001863741.1| ATP-dependent RNA helicase [Culex quinquefasciatus] gi|167875616|gb|EDS38999.1| ATP-dependent RNA helicase [Culex quinquefasciatus] Length = 378 Score = 43.9 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 SGP + RF V + +A G +K+ AE+ AA + Sbjct: 201 STSGPKNRQRFLCEVRVPNVAYVGAGNSTNKKDAERNAARD 241 >gi|224576591|gb|ACN56969.1| At1g01040-like protein [Capsella grandiflora] gi|224576601|gb|ACN56974.1| At1g01040-like protein [Capsella grandiflora] Length = 180 Score = 43.9 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 52/142 (36%) Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------- 98 ++S LF + EG+L+ +VS Q A L S+I+ Sbjct: 1 WVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGV 60 Query: 99 --------------------VSS--------DLRKDV------CSFM---TSIQADVVES 121 +S +D S+ + ADVVE+ Sbjct: 61 PPVFDEDTKESSFFBEEQKPLSKENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYW 143 LI Y++GG ++A + + Sbjct: 121 LIGVYYVEGG-KIAANHLMTWI 141 >gi|71754729|ref|XP_828279.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70833665|gb|EAN79167.1| hypothetical protein, conserved [Trypanosoma brucei] gi|261334101|emb|CBH17095.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 222 Score = 43.9 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 27/166 (16%) Query: 7 STLEKRIGYAFANRS-----LLEKALTHSSISHSYQESYERLEF--LGDRILGLLISTLL 59 + L +R+ F S L +A H S + S LG+ +L + L+ Sbjct: 54 TELNRRLQKRFPELSRKRHILFTRAFIHPSFTAPEAASSTMNASIGLGESLLLSVGGRLV 113 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSD---------------- 102 + FD + E+ + L S S + R +L + + Sbjct: 114 VSIFDDLRRDEVISLVSFLSSDAALSHLLRHHWELEDMVLTDASVQLFQPKATPSASNIV 173 Query: 103 --LRKDVCSFMTSIQ-ADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 L + A V+++I A++LDGG+ +A F+ ++ + Sbjct: 174 SWLPDQRGKQVPDQYCAGAVKAVIGAVFLDGGLSLATQFIFQHVLE 219 >gi|34535081|dbj|BAC87202.1| unnamed protein product [Homo sapiens] Length = 454 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 398 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 443 >gi|74001145|ref|XP_857102.1| PREDICTED: similar to SON protein isoform 12 [Canis familiaris] Length = 454 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 398 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 443 >gi|224576607|gb|ACN56977.1| At1g01040-like protein [Capsella grandiflora] gi|224576611|gb|ACN56979.1| At1g01040-like protein [Capsella grandiflora] Length = 180 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 52/142 (36%) Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------- 98 ++S LF + EG+L+ +VS Q A L S+I+ Sbjct: 1 WVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGV 60 Query: 99 --------------------VSS--------DLRKDV------CSFM---TSIQADVVES 121 +S +D S+ + ADVVE+ Sbjct: 61 PPVFDEDTKESSFFDEEQKPLSKENSDXFEDGEMEDGELEGDLSSYRVLSSKTLADVVEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYW 143 LI Y++GG ++A + + Sbjct: 121 LIGVYYVEGG-KIAANHLMTWI 141 >gi|149059854|gb|EDM10737.1| rCG58807, isoform CRA_c [Rattus norvegicus] Length = 454 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V +G Sbjct: 398 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 443 >gi|326509123|dbj|BAJ86954.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 1247 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 10/69 (14%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD---CSKRAAE 212 + K +LQ P YK + F VE +G+ + +K+ AE Sbjct: 1145 NPKNQLQTLLTRAGHDNPSYKTKQIK----NTLFRSTVEFNGMEF---VGQPCANKKLAE 1197 Query: 213 QVAAAEVLK 221 + AA E + Sbjct: 1198 KDAAGEAIN 1206 >gi|312073196|ref|XP_003139411.1| dihydrouridine synthase domain-containing protein [Loa loa] gi|307765423|gb|EFO24657.1| dihydrouridine synthase domain-containing protein [Loa loa] Length = 439 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 4/93 (4%) Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 E +F+D + + LK K L + P Y+ R D R+ Sbjct: 338 ETGISFIDLTFPPKRLKDRSGAVTPKCILNAFCDESGIKRPVYQCKLR---ATDKRYEAT 394 Query: 193 VEISGLAPAQGMD-CSKRAAEQVAAAEVLKREG 224 +E+ + + +K+ AEQVAA L G Sbjct: 395 IEVDSRKFSSRIGQPNKKMAEQVAALAALVGLG 427 >gi|224576579|gb|ACN56963.1| At1g01040-like protein [Capsella grandiflora] gi|224576581|gb|ACN56964.1| At1g01040-like protein [Capsella grandiflora] Length = 180 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 52/142 (36%) Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------- 98 ++S LF + EG+L+ +VS Q A L S+I+ Sbjct: 1 WVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGV 60 Query: 99 --------------------VSS--------DLRKDV------CSFM---TSIQADVVES 121 +S +D S+ + ADVVE+ Sbjct: 61 PPVFDEDTKESSFFDEEQKXLSKENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYW 143 LI Y++GG ++A + + Sbjct: 121 LIGVYYVEGG-KIAANHLMTWI 141 >gi|62088582|dbj|BAD92738.1| nuclear RNase III Drosha variant [Homo sapiens] Length = 432 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 13/87 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L+K IGY F +R LL+ A+TH S ++ + R + + I + Sbjct: 329 HLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHAR-----NSLSNCGI---RQPKYGD 380 Query: 66 AKEGELSVRFNSLVSAETCSQVARELD 92 K + +R + T + L Sbjct: 381 RKVHHMHMRKKGI---NTLINIMSRLG 404 >gi|68611225|emb|CAE03039.3| OSJNBa0084A10.14 [Oryza sativa Japonica Group] gi|116309362|emb|CAH66443.1| B0308C03.3 [Oryza sativa Indica Group] Length = 1439 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 11/72 (15%) Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 +D WK+ G + K LQ++ P+Y D +F V + L Sbjct: 367 IDDIWKK-----GDSGKMPKAVLQKFCQKLGWEAPKYSKISEK----DRKFIYAVNV--L 415 Query: 199 APAQGMDCSKRA 210 + G S++A Sbjct: 416 RGSTGRGKSRKA 427 >gi|125548350|gb|EAY94172.1| hypothetical protein OsI_15944 [Oryza sativa Indica Group] Length = 1439 Score = 43.5 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 11/72 (15%) Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 +D WK+ G + K LQ++ P+Y D +F V + L Sbjct: 367 IDDIWKK-----GDSGKMPKAVLQKFCQKLGWEAPKYSKISEK----DRKFIYAVNV--L 415 Query: 199 APAQGMDCSKRA 210 + G S++A Sbjct: 416 RGSTGRGKSRKA 427 >gi|148671307|gb|EDL03254.1| mCG115971 [Mus musculus] Length = 102 Score = 43.5 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 13/87 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L+K IGY F +R LL+ A+TH S ++ + R + + I + Sbjct: 20 HLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHAR-----NSLSNCGI---RQPKYGD 71 Query: 66 AKEGELSVRFNSLVSAETCSQVARELD 92 K + +R + T + L Sbjct: 72 RKVHHMHMRKKGI---NTLINIMSRLG 95 >gi|125590442|gb|EAZ30792.1| hypothetical protein OsJ_14858 [Oryza sativa Japonica Group] Length = 1388 Score = 43.5 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 11/72 (15%) Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 +D WK+ G + K LQ++ P+Y D +F V + L Sbjct: 367 IDDIWKK-----GDSGKMPKAVLQKFCQKLGWEAPKYSKISEK----DRKFIYAVNV--L 415 Query: 199 APAQGMDCSKRA 210 + G S++A Sbjct: 416 RGSTGRGKSRKA 427 >gi|241615739|ref|XP_002406800.1| tRNA-dihydrouridine synthase, putative [Ixodes scapularis] gi|215500870|gb|EEC10364.1| tRNA-dihydrouridine synthase, putative [Ixodes scapularis] Length = 449 Score = 43.5 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 25/79 (31%), Gaps = 14/79 (17%) Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 FV ++ L KT L W P YK + F VV + Sbjct: 356 AKFVRNMFEMSNL--------PKTTLINWTRKNNYPHPSYKTEAKE-----KSFRSVVVV 402 Query: 196 SGLAPAQGM-DCSKRAAEQ 213 + + SK+ AEQ Sbjct: 403 DSKRYSSTFLEKSKKYAEQ 421 >gi|187447250|emb|CAO84939.1| ENSANGG00000009686 protein [Anopheles gambiae] Length = 197 Score = 43.5 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 15/30 (50%) Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V I+ L G SK+ A+ AA E L+ Sbjct: 1 TVTINELKYGTGYGTSKKQAKSEAARETLE 30 >gi|147794041|emb|CAN60109.1| hypothetical protein VITISV_044329 [Vitis vinifera] Length = 858 Score = 43.5 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 9/29 (31%), Positives = 14/29 (48%) Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V +G GM +++ A+Q AA L Sbjct: 673 QVLFTGEKIGVGMGKTRKDAQQQAAENAL 701 >gi|270015916|gb|EFA12364.1| hypothetical protein TcasGA2_TC002070 [Tribolium castaneum] Length = 656 Score = 43.5 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 52/189 (27%), Gaps = 26/189 (13%) Query: 26 ALTHSSISHSYQESYERLEFLG-DRILGLLISTLLFNHFDSAKEGEL---SVRFNSLVSA 81 A H S + L G D IL + + L + + VS Sbjct: 487 AFRHRSFLCRKKGWNLCLMCGGRDAILPKW--RHVRIALRNLPPENLFQDQLVTATPVSG 544 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFVD 140 + + + +E L+ + LD G+ Sbjct: 545 ----------GMGMHLLQKMGWKPGEGLGKEK--TGALEPLLLEVKLDKKGLVANEEQKK 592 Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 K + + + + L E+A K P+Y + F GPDH F V Sbjct: 593 KKKQGQGSTYTLQNKHPVSLLGEYASKKKLGAPQYDLCFECGPDHKKNFLFKV------- 645 Query: 201 AQGMDCSKR 209 + S + Sbjct: 646 GEAQSRSIK 654 >gi|91082415|ref|XP_970120.1| PREDICTED: similar to tRNA-dihydrouridine synthase [Tribolium castaneum] gi|270007514|gb|EFA03962.1| hypothetical protein TcasGA2_TC014107 [Tribolium castaneum] Length = 455 Score = 43.5 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 6/61 (9%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 K+++ + P+Y+ D F + G + + +KR AEQ A Sbjct: 377 PKSKIIAYCGKHKFDLPKYQTVNE-----DKLFRAIATFQGKKYSSSYWEKNKRFAEQGA 431 Query: 216 A 216 A Sbjct: 432 A 432 >gi|224076842|ref|XP_002305017.1| predicted protein [Populus trichocarpa] gi|222847981|gb|EEE85528.1| predicted protein [Populus trichocarpa] Length = 967 Score = 43.5 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 LQE A K G E++ + S D +F++ G +G ++R A++ AA Sbjct: 725 LQEIA-MKCGTKVEFRPALIATS----DLQFSIETWFVGEKVGEGTGKTRREAQRQAAEG 779 Query: 219 VLKRE 223 +K+ Sbjct: 780 SIKKL 784 >gi|297723167|ref|NP_001173947.1| Os04g0432300 [Oryza sativa Japonica Group] gi|255675478|dbj|BAH92675.1| Os04g0432300 [Oryza sativa Japonica Group] Length = 1114 Score = 43.5 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 11/72 (15%) Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 +D WK+ G + K LQ++ P+Y D +F V + L Sbjct: 367 IDDIWKK-----GDSGKMPKAVLQKFCQKLGWEAPKYSKISEK----DRKFIYAVNV--L 415 Query: 199 APAQGMDCSKRA 210 + G S++A Sbjct: 416 RGSTGRGKSRKA 427 >gi|187447260|emb|CAO84944.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447264|emb|CAO84946.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447268|emb|CAO84948.1| ENSANGG00000009686 protein [Anopheles gambiae] Length = 197 Score = 43.5 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 15/30 (50%) Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V I+ L G SK+ A+ AA E L+ Sbjct: 1 TVTINELKYGTGYGTSKKQAKSEAARETLE 30 >gi|187447242|emb|CAO84935.1| ENSANGG00000009686 protein [Anopheles gambiae] Length = 197 Score = 43.5 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 15/30 (50%) Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V I+ L G SK+ A+ AA E L+ Sbjct: 1 TVTINELKYGTGYGTSKKQAKSEAARETLE 30 >gi|187447226|emb|CAO84927.1| ENSANGG00000009686 protein [Anopheles arabiensis] gi|187447228|emb|CAO84928.1| ENSANGG00000009686 protein [Anopheles arabiensis] gi|187447230|emb|CAO84929.1| ENSANGG00000009686 protein [Anopheles arabiensis] gi|187447232|emb|CAO84930.1| ENSANGG00000009686 protein [Anopheles arabiensis] gi|187447234|emb|CAO84931.1| ENSANGG00000009686 protein [Anopheles arabiensis] gi|187447236|emb|CAO84932.1| ENSANGG00000009686 protein [Anopheles arabiensis] gi|187447238|emb|CAO84933.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447244|emb|CAO84936.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447246|emb|CAO84937.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447248|emb|CAO84938.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447252|emb|CAO84940.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447254|emb|CAO84941.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447256|emb|CAO84942.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447258|emb|CAO84943.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447262|emb|CAO84945.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447266|emb|CAO84947.1| ENSANGG00000009686 protein [Anopheles gambiae] Length = 197 Score = 43.5 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 15/30 (50%) Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V I+ L G SK+ A+ AA E L+ Sbjct: 1 TVTINELKYGTGYGTSKKQAKSEAARETLE 30 >gi|299756402|ref|XP_002912199.1| hypothetical protein CC1G_13731 [Coprinopsis cinerea okayama7#130] gi|298411660|gb|EFI28705.1| hypothetical protein CC1G_13731 [Coprinopsis cinerea okayama7#130] Length = 79 Score = 43.5 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 6/71 (8%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRS---GPDHDPRFTVVVEISGLAPAQGMDCSKR 209 DA + L ++ + ++++ GP HD ++T V +I G +G K Sbjct: 1 MSNDAISRLNQYLNKIGKAA---SLSWQECNYGPPHDSKWTCVCKIDGEPRGEGTSTHKH 57 Query: 210 AAEQVAAAEVL 220 A+ +AA + L Sbjct: 58 TAKNIAAEQAL 68 >gi|187447240|emb|CAO84934.1| ENSANGG00000009686 protein [Anopheles gambiae] Length = 197 Score = 43.5 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 15/30 (50%) Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V I+ L G SK+ A+ AA E L+ Sbjct: 1 TVTINELKYGTGYGTSKKQAKSEAARETLE 30 >gi|297740849|emb|CBI31031.3| unnamed protein product [Vitis vinifera] Length = 931 Score = 43.5 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 12/74 (16%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDP------------RFTVVVEISGLAPAQGMDCSKRAA 211 H KFG YKV G + F +++ + K+ A Sbjct: 19 IIHQKFGDKACYKVEEVQGDTQNGCPGLAIPQKGPCLFRCSLQLPEFSVVSEYFKRKKDA 78 Query: 212 EQVAAAEVLKREGI 225 EQ AA + L++ G+ Sbjct: 79 EQSAAEKALRKLGV 92 >gi|328722076|ref|XP_003247474.1| PREDICTED: hypothetical protein LOC100169140 isoform 2 [Acyrthosiphon pisum] Length = 342 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 6/87 (6%) Query: 137 TFVDKYWKQRALKSGKFRRDAKT--ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + K +A KF D K +Q K GV V P F V E Sbjct: 242 NVLKSPPKPKAGAMRKFPEDPKNCNPIQLINQMKPGVKFIETVISSKTPS---VFQVKCE 298 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLK 221 I + P G +K+AA++ +K Sbjct: 299 IDNI-PFTGQGSTKKAAKKECCIAAIK 324 >gi|328722074|ref|XP_001945290.2| PREDICTED: hypothetical protein LOC100169140 isoform 1 [Acyrthosiphon pisum] Length = 381 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 6/87 (6%) Query: 137 TFVDKYWKQRALKSGKFRRDAKT--ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + K +A KF D K +Q K GV V P F V E Sbjct: 281 NVLKSPPKPKAGAMRKFPEDPKNCNPIQLINQMKPGVKFIETVISSKTPS---VFQVKCE 337 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLK 221 I + P G +K+AA++ +K Sbjct: 338 IDNI-PFTGQGSTKKAAKKECCIAAIK 363 >gi|157939656|ref|YP_001497028.1| dsRNA-binding [Tanapox virus] gi|146746372|gb|ABQ43508.1| dsRNA-binding [Tanapox virus] gi|146746528|gb|ABQ43663.1| dsRNA-binding [Tanapox virus] Length = 181 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 13/70 (18%) Query: 156 DAKTE-----LQEWAH---AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + L E+ + + SG H P FT V ISG+ + + Sbjct: 103 NWKDKNPCIVLNEYCQFTCRDWSIDIT-----TSGKSHCPMFTATVIISGIKFKPAIGNT 157 Query: 208 KRAAEQVAAA 217 KR A+ A+ Sbjct: 158 KREAKYNASK 167 >gi|12085017|ref|NP_073419.1| 34L protein [Yaba-like disease virus] gi|12056193|emb|CAC21272.1| 34L protein [Yaba-like disease virus] Length = 185 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 13/70 (18%) Query: 156 DAKTE-----LQEWAH---AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + L E+ + + SG H P FT V ISG+ + + Sbjct: 107 NWKDKNPCIVLNEYCQFTCRDWSIDIT-----TSGKSHCPMFTATVIISGIKFKPAIGNT 161 Query: 208 KRAAEQVAAA 217 KR A+ A+ Sbjct: 162 KREAKYNASK 171 >gi|255555995|ref|XP_002519032.1| double-stranded RNA binding protein, putative [Ricinus communis] gi|223541695|gb|EEF43243.1| double-stranded RNA binding protein, putative [Ricinus communis] Length = 978 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 18/36 (50%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F+V +G +G ++R A+ VAA +K Sbjct: 752 QFSVEAWFAGERVGEGFGRTRREAQSVAAEASIKNL 787 Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 15/35 (42%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + VEI G +G+ + A+ AA + L Sbjct: 890 NAEVHAQVEIDGQVMGKGIGSTFDEAKMQAAEKAL 924 >gi|308070996|ref|YP_003872601.1| ribonuclease III [Paenibacillus polymyxa E681] gi|305860275|gb|ADM72063.1| Ribonuclease III [Paenibacillus polymyxa E681] Length = 152 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 21/112 (18%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 L ++GD + + + L + + L R LVSA+ S++ L +V ++ Sbjct: 34 LAYIGDAVYEVAVRQYLLAQ-PNLRPNHLHRRATGLVSAKAQSRM-----LGLLEKVLTE 87 Query: 103 LRKDVCSFMTSI---------------QADVVESLIAALYLDGGIEVAGTFV 139 +D+ + A +E LI +LY DG ++ + Sbjct: 88 EERDIVRQGRNAKSGSLPKNADVLEYRHATALEGLIGSLYCDGHLDRLRELI 139 >gi|195478541|ref|XP_002100554.1| GE17129 [Drosophila yakuba] gi|194188078|gb|EDX01662.1| GE17129 [Drosophila yakuba] Length = 473 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 6/69 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 KT+L A P Y+ D F + G + + +K+ AEQ A Sbjct: 395 PKTQLYVHAGKAGKSPPAYETQQC-----DKLFRSICSYDGQRFSSSFWEKNKKQAEQGA 449 Query: 216 AAEVLKREG 224 A L G Sbjct: 450 ALVALLHLG 458 >gi|82469804|gb|ABB77160.1| R2D2 [Drosophila mauritiana] Length = 302 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 5/74 (6%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207 + RD EL+++ P +V +SG P F ++ + S Sbjct: 79 EMTNLNRDMLKELRDYCVRHDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 135 Query: 208 -KRAAEQVAAAEVL 220 K+ A Q AA E+L Sbjct: 136 KKKDARQRAAIEML 149 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+ P Y G D F VE+ + A G SKR A+ +AAA ++ Sbjct: 1 LHEFCAKTNNTPPTYHFIN--GEDGG--FVCKVELLEIE-ALGNGRSKRDAKHLAAANIM 55 Query: 221 KR 222 ++ Sbjct: 56 RK 57 >gi|238577933|ref|XP_002388543.1| hypothetical protein MPER_12423 [Moniliophthora perniciosa FA553] gi|215449925|gb|EEB89473.1| hypothetical protein MPER_12423 [Moniliophthora perniciosa FA553] Length = 281 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 48/127 (37%), Gaps = 7/127 (5%) Query: 28 THSS-----ISHSYQESYERLEFLGDRILGLLI-STLLFNHFDSAKEGELSVRFNSLVSA 81 TH S + ++ ERL LG++I+ +++ + ++ ++ Sbjct: 23 THKSLRKPGMQNTDWGDTERLALLGEKIMDMVVYAYFFKKGNPMRTAEQIRQDVADTLTP 82 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 + + + +L +R + ++ D + + A++L GI+ +++ Sbjct: 83 QNFNLWLEQHELKYKLRSAPNVEPDPFQDPQE-LRHHFNTFVGAVFLSSGIDEVSSWIVS 141 Query: 142 YWKQRAL 148 A+ Sbjct: 142 LLDPTAV 148 >gi|225444071|ref|XP_002264328.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 886 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 12/74 (16%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDP------------RFTVVVEISGLAPAQGMDCSKRAA 211 H KFG YKV G + F +++ + K+ A Sbjct: 19 IIHQKFGDKACYKVEEVQGDTQNGCPGLAIPQKGPCLFRCSLQLPEFSVVSEYFKRKKDA 78 Query: 212 EQVAAAEVLKREGI 225 EQ AA + L++ G+ Sbjct: 79 EQSAAEKALRKLGV 92 >gi|224576589|gb|ACN56968.1| At1g01040-like protein [Capsella grandiflora] Length = 180 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ++S LF + EG+L+ +VS Q A L S+I+ Sbjct: 1 WVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 46 >gi|319803056|ref|NP_001188373.1| ATP-dependent RNA helicase A-like [Danio rerio] Length = 1270 Score = 43.1 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K L W K +TP Y +G + +F V + + G +K+ A+ Sbjct: 3 DIKNFLYAWC-GKKKLTPNYD-IRAAGNKNRQKFMCEVRVESYSYIGMGNSTNKKDAQSN 60 Query: 215 AAAE 218 AA + Sbjct: 61 AARD 64 Score = 42.4 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210 +AK L ++ + T +YK + GPDH+ F + I A+ +K+ Sbjct: 187 NAKARLNQFFQKEKNQT-DYK-YSQVGPDHNRSFIAEMTIFVRQLGRRVTAREHGSTKKL 244 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 245 AAQSCALSLVRQL 257 >gi|300681522|emb|CBH32617.1| ATP binding protein, putative, expressed [Triticum aestivum] Length = 1072 Score = 43.1 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 10/68 (14%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD---CSKRAAE 212 + K +LQ P YK + F VE +G+ + +K+ AE Sbjct: 970 NPKNQLQTLLTRAGHDNPSYKTKQIK----NTLFRSTVEFNGMQF---VGQPCANKKLAE 1022 Query: 213 QVAAAEVL 220 + AA E + Sbjct: 1023 KDAAGEAI 1030 >gi|169154685|emb|CAQ13278.1| novel protein similar to vertebrate DEAH (Asp-Glu-Ala-His) box polypeptide 9 (DHX9) [Danio rerio] Length = 1271 Score = 43.1 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K L W K +TP Y +G + +F V + + G +K+ A+ Sbjct: 3 DIKNFLYAWC-GKKKLTPNYD-IRAAGNKNRQKFMCEVRVESYSYIGMGNSTNKKDAQSN 60 Query: 215 AAAE 218 AA + Sbjct: 61 AARD 64 Score = 42.4 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210 +AK L ++ + T +YK + GPDH+ F + I A+ +K+ Sbjct: 187 NAKARLNQFFQKEKNQT-DYK-YSQVGPDHNRSFIAEMTIFVRQLGRRVTAREHGSTKKL 244 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 245 AAQSCALSLVRQL 257 >gi|300123389|emb|CBK24662.2| unnamed protein product [Blastocystis hominis] Length = 326 Score = 43.1 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 18/37 (48%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 RF V++ G +G S+R+A+ AA L G Sbjct: 284 RFHAKVKVDGKMMGEGKGKSQRSAQGKAAWYALVELG 320 >gi|38229197|ref|NP_938290.1| 34L [Yaba monkey tumor virus] gi|38000468|gb|AAR07391.1| 34L [Yaba monkey tumor virus] Length = 184 Score = 43.1 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 159 TELQEWAHAKFGV-TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 T + E+ + E +G H P FT V ISG+ + +K+ A+ A+ Sbjct: 114 TVINEYCQLTSRDWSIE---VTTAGESHCPIFTASVIISGIKFKPEIGNTKKEAKHKASK 170 Query: 218 EVLK 221 ++ Sbjct: 171 ITME 174 >gi|302697477|ref|XP_003038417.1| hypothetical protein SCHCODRAFT_103556 [Schizophyllum commune H4-8] gi|300112114|gb|EFJ03515.1| hypothetical protein SCHCODRAFT_103556 [Schizophyllum commune H4-8] Length = 74 Score = 43.1 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%) Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GP+ +TV I G +K A+ AA + L G+ Sbjct: 29 GPNGTVVWTVKCNIRGETKGTASAPNKNTAKIEAAKQALAALGV 72 >gi|148226408|ref|NP_001087383.1| ATP-dependent RNA helicase A-like protein [Xenopus laevis] gi|71153340|sp|Q68FK8|DHX9_XENLA RecName: Full=ATP-dependent RNA helicase A-like protein; AltName: Full=DEAH box protein 9; AltName: Full=Nuclear DNA helicase II; Short=NDH II gi|51262114|gb|AAH79701.1| MGC81010 protein [Xenopus laevis] Length = 1262 Score = 43.1 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K L W K +TP Y+ +G + +F V I G G +K+ A+ Sbjct: 3 DIKNFLYAWC-GKKKLTPNYE-IRAAGNKNRQKFMCEVRIDGFNYIGMGNSTNKKDAQTN 60 Query: 215 AAAE 218 +A + Sbjct: 61 SARD 64 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV----VE-ISGLAPAQGMDCSKRA 210 +AK L ++ + EYK + GPDH+ F V+ + A+ +K+ Sbjct: 183 NAKARLNQFFQKE-KTQGEYK-YSQVGPDHNRSFIAEMTLYVKQLGRKIIAREHGSNKKL 240 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 241 AAQSCALSIVRQL 253 >gi|242047516|ref|XP_002461504.1| hypothetical protein SORBIDRAFT_02g003680 [Sorghum bicolor] gi|241924881|gb|EER98025.1| hypothetical protein SORBIDRAFT_02g003680 [Sorghum bicolor] Length = 942 Score = 43.1 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 10/71 (14%) Query: 165 AHAKFGVTPEYKVTFRSG---------PDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQV 214 H +FG Y V P + +++ GL+ A G K+ AEQ Sbjct: 12 VHQRFGAKARYTVEEVREAVGGCPGLAPQTRSVYRCALDLPGLSVATPGTFLRKKDAEQA 71 Query: 215 AAAEVLKREGI 225 AA L + GI Sbjct: 72 AAQIALDKLGI 82 >gi|290562119|gb|ADD38456.1| 39S ribosomal protein L44, mitochondrial [Lepeophtheirus salmonis] Length = 328 Score = 43.1 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 75/238 (31%), Gaps = 25/238 (10%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI------------SHSYQESYERLEFLGDRIL 51 + L R+ +F N L+ +AL + + S RL LG ++ Sbjct: 74 VELFALGARLRESF-NFELVREALRDPTFYLVSMKEKIDLSLKDSEASNTRLVELGREVI 132 Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 ++ L F + L+S + A + L + VS + Sbjct: 133 SASLNDFLTKTFPKVPSDGIIAFQEYLMSPYVLASKALHIGLKD-LVVSQEYPPS----- 186 Query: 112 TSIQADVVESLIAALYLDG-----GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 + ++ +LI A G ++ V L ++ L + Sbjct: 187 KNTLSNAFCALIGAHSESGNNRRQSYQLVVDLVATQIIGMDLHDVWKIQNPMDYLSKILA 246 Query: 167 AKFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++ + SG + + V + + + S A +AA + L+R Sbjct: 247 ENNMKEPEPRLQWASGKNTLSASYHVGIYSNQSLIGECTGESIETARDMAALDTLRRM 304 >gi|12597813|gb|AAG60124.1|AC073555_8 hypothetical protein [Arabidopsis thaliana] Length = 1167 Score = 42.8 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 15/114 (13%) Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA-----KTELQEWAHAKF 169 + L++ +G + ++ G +++ K +LQ Sbjct: 1024 LMTAIRLLVSEDQCEGRFVYGRKALSPTPAKKLKDVGAQLQNSGGENNKNQLQTLLARAG 1083 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC---SKRAAEQVAAAEVL 220 +P YK + +F +V +GL M SK+ AE+ AA E L Sbjct: 1084 HGSPVYKTRQLK----NNQFRSMVTFNGLDF---MGKPCGSKKNAEKDAAHEAL 1130 >gi|30694379|ref|NP_175298.2| helicase domain-containing protein [Arabidopsis thaliana] gi|332194212|gb|AEE32333.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana] Length = 1197 Score = 42.8 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 15/114 (13%) Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA-----KTELQEWAHAKF 169 + L++ +G + ++ G +++ K +LQ Sbjct: 1054 LMTAIRLLVSEDQCEGRFVYGRKALSPTPAKKLKDVGAQLQNSGGENNKNQLQTLLARAG 1113 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC---SKRAAEQVAAAEVL 220 +P YK + +F +V +GL M SK+ AE+ AA E L Sbjct: 1114 HGSPVYKTRQLK----NNQFRSMVTFNGLDF---MGKPCGSKKNAEKDAAHEAL 1160 >gi|238478799|ref|NP_001154411.1| helicase domain-containing protein [Arabidopsis thaliana] gi|332194213|gb|AEE32334.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana] Length = 1206 Score = 42.8 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 15/114 (13%) Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA-----KTELQEWAHAKF 169 + L++ +G + ++ G +++ K +LQ Sbjct: 1054 LMTAIRLLVSEDQCEGRFVYGRKALSPTPAKKLKDVGAQLQNSGGENNKNQLQTLLARAG 1113 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC---SKRAAEQVAAAEVL 220 +P YK + +F +V +GL M SK+ AE+ AA E L Sbjct: 1114 HGSPVYKTRQLK----NNQFRSMVTFNGLDF---MGKPCGSKKNAEKDAAHEAL 1160 >gi|82469808|gb|ABB77162.1| R2D2 [Drosophila pallidosa] Length = 293 Score = 42.8 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217 EL+++ P ++ + G + P F +++ L S K+ A Q AA Sbjct: 82 ELRDFCVRHEMPLPTIEIVQQCGTPNAPEFVACCKVASLTR---YGKSDKKKDARQRAAI 138 Query: 218 EVL 220 E+L Sbjct: 139 EML 141 >gi|219124880|ref|XP_002182722.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406068|gb|EEC46009.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 1021 Score = 42.8 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 + L EW + TP + + ++G + F VV+E G G C+K AA+Q+AA Sbjct: 374 SALYEWCSKRQR-TPSF-LLQKAGYSGNFAFKVVLE-DGEEYGVGDGCTKIAAKQLAAKR 430 Query: 219 VLKRE 223 L+ Sbjct: 431 SLQAL 435 >gi|260835242|ref|XP_002612618.1| hypothetical protein BRAFLDRAFT_219680 [Branchiostoma floridae] gi|229297996|gb|EEN68627.1| hypothetical protein BRAFLDRAFT_219680 [Branchiostoma floridae] Length = 331 Score = 42.8 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 18/39 (46%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + + L E + + + PE+ + SGPDH F V Sbjct: 283 KHPVSALMEICNKRKWMPPEFVLVHDSGPDHKKNFLFKV 321 >gi|317149900|ref|XP_003190370.1| hypothetical protein AOR_1_1712114 [Aspergillus oryzae RIB40] Length = 651 Score = 42.8 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 15/151 (9%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGD---RILGLLISTLLFNHFDSAK 67 K + Y F + + L +ALT + + +LGD ++ +S + + Sbjct: 12 KALDYQFKSDTRLIEALTAPGVEGEGSQGN---RWLGDFGIDVIRSCLSFYAYEE--KIR 66 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 +++ L S + VA+ + L I + + + ++IAA + Sbjct: 67 PNKIASLKQKLCSYDHLMSVAQRITLDRVIIYNP----RSGKGRPIVVGKALAAIIAAAH 122 Query: 128 LDGGIEVAGTF-VDKYWKQRALKSGKFRRDA 157 LD G T+ + ++ + D Sbjct: 123 LDCGRSYQTTWEILEHIG--FFDPERNGVDP 151 >gi|296808873|ref|XP_002844775.1| RNase III domain-containing protein [Arthroderma otae CBS 113480] gi|238844258|gb|EEQ33920.1| RNase III domain-containing protein [Arthroderma otae CBS 113480] Length = 258 Score = 42.8 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 14/137 (10%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLL-------FNHFDSAKEGE------L 71 +A+TH S + +RL + L + F Sbjct: 115 QAVTHKSFDQGRRGFNDRLAYFASLALVQNPAAYAPSAKADPFGRQPYESPALKGLEVLS 174 Query: 72 SVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 + L + +AR + +R V S + +I + +++ A+ L+ Sbjct: 175 QDTRSRLTGRREMAALARHYGINDVMRWVPRKQHNLTESGVDTIYTHAMYAIVGAIALEN 234 Query: 131 GIEVAGTFVDKYWKQRA 147 G +VA V + Sbjct: 235 GSKVANEIVRDRILKPL 251 >gi|296081073|emb|CBI18267.3| unnamed protein product [Vitis vinifera] Length = 1162 Score = 42.8 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 13/78 (16%) Query: 149 KSGKFRRD---AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQG 203 S +F +D K+ LQ P+YK H F +VE G+ G Sbjct: 1026 DSNRFTKDGTNPKSLLQTLLMRAGHSPPKYKTK------HLKTNEFRALVEFKGMQ-FVG 1078 Query: 204 M-DCSKRAAEQVAAAEVL 220 +K+ AE+ AA E L Sbjct: 1079 KPKKNKQLAERDAAIEAL 1096 >gi|195435718|ref|XP_002065826.1| GK18553 [Drosophila willistoni] gi|194161911|gb|EDW76812.1| GK18553 [Drosophila willistoni] Length = 248 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Query: 152 KFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 RD K EL E+ + P +++ ++ + P+F ++ + G+ K+ Sbjct: 32 DPNRDMFK-ELCEFCKSHDMPYPVFEIVEQNRNPNAPKFVACCTLTSIKR-YGISDKKKE 89 Query: 211 AEQVAAAEVL 220 A Q AA+ +L Sbjct: 90 AHQKAASAIL 99 >gi|213403884|ref|XP_002172714.1| predicted protein [Schizosaccharomyces japonicus yFS275] gi|212000761|gb|EEB06421.1| predicted protein [Schizosaccharomyces japonicus yFS275] Length = 180 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 10/153 (6%) Query: 5 RYSTLEKRI----GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + S K++ Y F + L + LTH S +H E +G L L + Sbjct: 20 QVSEFYKKLFKTDNY-FESDELNLQLLTHKSFNHGQTPYNEGFRAIGRHALELSLINFSL 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---- 116 + K G + + E ++VA + L IR + + S Sbjct: 79 QQTNQLK-GVSEMWLQNACRPENINKVAEQWGLQQVIRWKTPKLRASVDTKQSGLERVTF 137 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 D + ++I A+Y+ G A F K ++ Sbjct: 138 DTMLAIIGAVYMRKGARTAVDFCQKNLVPALIR 170 >gi|225470788|ref|XP_002269787.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1136 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 13/78 (16%) Query: 149 KSGKFRRD---AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQG 203 S +F +D K+ LQ P+YK H F +VE G+ G Sbjct: 1026 DSNRFTKDGTNPKSLLQTLLMRAGHSPPKYKTK------HLKTNEFRALVEFKGMQ-FVG 1078 Query: 204 M-DCSKRAAEQVAAAEVL 220 +K+ AE+ AA E L Sbjct: 1079 KPKKNKQLAERDAAIEAL 1096 >gi|212535350|ref|XP_002147831.1| RNase III domain protein [Penicillium marneffei ATCC 18224] gi|210070230|gb|EEA24320.1| RNase III domain protein [Penicillium marneffei ATCC 18224] Length = 259 Score = 42.8 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 30/146 (20%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF-------DSAKEGELSVRF-- 75 A+TH S + +RL LG RI+ L S LL + S + F Sbjct: 108 LAVTHKSFDQGRRGFNDRLALLGKRIVQLQASLLLVQNPGNYKTQVPSLSVEDQHKTFKH 167 Query: 76 NSLVSAETC--------------SQVARELDLASFIRVSS----DLRKDVCSFMTSIQAD 117 +L E S+VA + L +R + DL + + Sbjct: 168 AALEGLENLTLDNRGWFTHKVNISRVAEKYGLLKVLRWAPVKPNDLEHSGLNV---VLTH 224 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYW 143 + +++ A+ L+ G A F + Sbjct: 225 TMYAIVGAIALERGGVEANEFARQRI 250 >gi|78767040|ref|YP_392494.1| NSP1 [Adult diarrheal rotavirus strain J19] gi|123851383|sp|Q45UF6|NSP1N_ROTJ1 RecName: Full=Non-structural protein 1; Short=NSP1 gi|52854270|gb|AAU88188.1| non-structural protein NSP1 [Human rotavirus ADRV-N] gi|69145465|gb|AAZ03489.1| NSP1 [Adult diarrheal rotavirus strain J19] Length = 395 Score = 42.8 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E + V P Y++ H + + Q SK+ A+ AA ++ Sbjct: 333 LNEHSQRYGFVQPTYEIIAVVSDGHH-SYQCTCYYKDMK-TQSTGPSKKNAKHQAAEQMF 390 Query: 221 K 221 + Sbjct: 391 R 391 >gi|67469017|ref|XP_650500.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS] gi|56467134|gb|EAL45114.1| hypothetical protein EHI_068740 [Entamoeba histolytica HM-1:IMSS] Length = 256 Score = 42.8 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 43/121 (35%), Gaps = 20/121 (16%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL---LFNHFDSAKEGELSVRFNSLV 79 L +A S QE YE+ EF GD L S+L ++ S V Sbjct: 36 LNQA-----YSSQDQE-YEKNEFYGDSYLEERASSLVLKFLRKYEQIPFEMYSGLRIHTV 89 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 +T ++ L L D +F + D+VESLI L E A F+ Sbjct: 90 KNQTLGEIFDLLHLG-----------DTKTFEKKKKGDLVESLIGGCVLLSQRENATLFL 138 Query: 140 D 140 Sbjct: 139 L 139 >gi|82469818|gb|ABB77167.1| R2D2 [Drosophila sechellia] Length = 289 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217 EL+++ P +V +SG P F ++ + S K+ A Q AA Sbjct: 77 ELRDYCVRHDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDARQRAAI 133 Query: 218 EVL 220 E+L Sbjct: 134 EML 136 >gi|167526006|ref|XP_001747337.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774172|gb|EDQ87804.1| predicted protein [Monosiga brevicollis MX1] Length = 487 Score = 42.8 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 6/65 (9%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVA 215 K L + P + T + +F V G A ++R AEQ A Sbjct: 402 PKEVLMAYTQRMQLEEPSFSSTPV-----NKKFVAVCHWLGEQYATSAGHGNRRYAEQAA 456 Query: 216 AAEVL 220 A L Sbjct: 457 ALVAL 461 >gi|328862737|gb|EGG11837.1| hypothetical protein MELLADRAFT_76432 [Melampsora larici-populina 98AG31] Length = 1308 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 10/94 (10%) Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 G E A V D + L + +++ G D R T Sbjct: 35 GEEQAAHEVLALILIHL-----AHYDPISRLTY----RSLPNITIRLSNSIG-DTLQRVT 84 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 VV + G D SK+ AE++AA + G Sbjct: 85 VVADTGTNIIGTGDDPSKKEAEKLAALSACFQLG 118 >gi|85090664|ref|XP_958525.1| hypothetical protein NCU09826 [Neurospora crassa OR74A] gi|28919895|gb|EAA29289.1| conserved hypothetical protein [Neurospora crassa OR74A] Length = 267 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 53/146 (36%), Gaps = 26/146 (17%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH---------------FDSAKEG 69 A+TH S + + RL FLG +I+ L + + ++ A Sbjct: 123 LAVTHKSFDYGRRGYNTRLAFLGRQIIALETTRSILTSPVLNEPIVDKYGRTPYNHAALA 182 Query: 70 ELSVRFNS----LVSAETCSQVARELDLASFI----RVSSDLRKDVCSFMTSIQADVVES 121 + + ++ +++ + L + + R+ DL + + + + Sbjct: 183 NIDKLIYTQPLDIMDKTKIARMGIDFGLLTVMRWKPRMPEDLESSG---VVVVLNSTLFA 239 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA 147 +I A+ L+ G VA V + +R Sbjct: 240 IIGAISLEKGAAVAQRIVREKILKRL 265 >gi|322498652|emb|CBZ33724.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 888 Score = 42.4 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 22/110 (20%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDS------AKEGELSVRFNSLVSAETC 84 S + ++ERLE++GD G IS + + + ++ ++ Sbjct: 249 SRYRRRRVAFERLEYIGDNCWGNNISNRILLLYPDQQWLYSERCSTFTLVRDACEMNVNL 308 Query: 85 SQVARELDLASFI------RVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 V L+L + R+ S ++AD+VE + L+L Sbjct: 309 DFVFDTLELWHLLSTTAHSRLGSG----------KVKADLVEGIFGELHL 348 >gi|146085251|ref|XP_001465223.1| RNA editing complex protein MP90 [Leishmania infantum JPCM5] gi|134069320|emb|CAM67470.1| putative RNA editing complex protein MP90 [Leishmania infantum JPCM5] Length = 890 Score = 42.4 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 22/110 (20%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDS------AKEGELSVRFNSLVSAETC 84 S + ++ERLE++GD G IS + + + ++ ++ Sbjct: 249 SRYRRRRVAFERLEYIGDNCWGNNISNRILLLYPDQQWLYSERCSTFTLVRDACEMNVNL 308 Query: 85 SQVARELDLASFI------RVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 V L+L + R+ S ++AD+VE + L+L Sbjct: 309 DFVFDTLELWHLLSTTAHSRLGSG----------KVKADLVEGIFGELHL 348 >gi|157868579|ref|XP_001682842.1| RNA editing complex protein MP90; nuclease [Leishmania major strain Friedlin] gi|68126298|emb|CAJ03932.1| putative nuclease [Leishmania major strain Friedlin] Length = 890 Score = 42.4 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 22/110 (20%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDS------AKEGELSVRFNSLVSAETC 84 S + ++ERLE++GD G IS + + + ++ ++ Sbjct: 249 SRYRQRRVAFERLEYIGDNCWGNNISNRILLLYPDQQWLYSERCSTFTLVRDACEMNVNL 308 Query: 85 SQVARELDLASFI------RVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 V L+L + R+ S ++AD+VE + L+L Sbjct: 309 DFVFDTLELWHLLSTTAHSRLGSG----------KVKADLVEGIFGELHL 348 >gi|38073417|gb|AAR10830.1| MP90 [Leishmania major] Length = 1022 Score = 42.4 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 22/110 (20%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDS------AKEGELSVRFNSLVSAETC 84 S + ++ERLE++GD G IS + + + ++ ++ Sbjct: 381 SRYRQRRVAFERLEYIGDNCWGNNISNRILLLYPDQQWLYSERCSTFTLVRDACEMNVNL 440 Query: 85 SQVARELDLASFI------RVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 V L+L + R+ S ++AD+VE + L+L Sbjct: 441 DFVFDTLELWHLLSTTAHSRLGSG----------KVKADLVEGIFGELHL 480 >gi|167384956|ref|XP_001737156.1| hypothetical protein [Entamoeba dispar SAW760] gi|165900165|gb|EDR26576.1| hypothetical protein EDI_059550 [Entamoeba dispar SAW760] Length = 256 Score = 42.4 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 43/121 (35%), Gaps = 20/121 (16%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL---LFNHFDSAKEGELSVRFNSLV 79 L +A S QE YE+ EF GD L S+L ++ S V Sbjct: 36 LNQA-----YSSQDQE-YEKNEFYGDSYLEERASSLVLKFLRKYEQIPFEMYSGLRIHTV 89 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 +T ++ L L D +F + D+VESLI L E A F+ Sbjct: 90 KNQTLGEIFDLLHLG-----------DTKTFEKKKKGDLVESLIGGCVLLSQRENATLFL 138 Query: 140 D 140 Sbjct: 139 L 139 >gi|194770353|ref|XP_001967258.1| GF15959 [Drosophila ananassae] gi|190614534|gb|EDV30058.1| GF15959 [Drosophila ananassae] Length = 460 Score = 42.4 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 6/69 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 KT+L A P Y+ D F + G + + +K+ AEQ A Sbjct: 382 PKTQLYVHAGKAGKNPPGYETQQC-----DKLFRAICSYDGQRFSSTFWEKNKKQAEQGA 436 Query: 216 AAEVLKREG 224 A L G Sbjct: 437 ALVALLHLG 445 >gi|328781456|ref|XP_623721.3| PREDICTED: 39S ribosomal protein L44, mitochondrial [Apis mellifera] Length = 313 Score = 42.4 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 77/247 (31%), Gaps = 49/247 (19%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHS---------------YQESYERLEFL--GDRI 50 +R+ F N L +A H S +S E EF+ G I Sbjct: 65 AFNERLSEKF-NTEKLNQAFIHKSYIVEEVKKQKEIGIKEPLFNIQSNE--EFIKKGKEI 121 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 +I L + S E + + L+S E + + + I Sbjct: 122 TSAVIKKYLNQNLSSLPENGIIAFHDYLMSQELLATASLHIGTKDIILTGEHPVSQE--- 178 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE-WAHAK- 168 A +L+ AL + AG FV + L +G +D L E W K Sbjct: 179 ---TLAQTFLALVGALAESVDVNHAGIFVRDF-----LIAGLASKD----LTEIWCPTKP 226 Query: 169 -----------FGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 V E ++ ++G + + + + + G + A+ VAA Sbjct: 227 FETLTDMISMERKVIIEARLIGQAGKNTILSVYHIGIYANKEYLGSGFGQTIAEAKDVAA 286 Query: 217 AEVLKRE 223 +L + Sbjct: 287 INILSQM 293 >gi|322815868|gb|EFZ24386.1| RNA editing complex protein MP90, putative [Trypanosoma cruzi] Length = 826 Score = 42.4 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 10/101 (9%) Query: 34 HSYQESYERLEFLGDRILGLLISTLLFNHFDSA------KEGELSVRFNSLVSAETCSQV 87 H + ++ERLE++GD G +S + F + ++ T + Sbjct: 297 HRRRVAFERLEYIGDNSWGNHLSNRMMVLFPDRQWAYSQNAYSFNCFRDACEMNVTLEFM 356 Query: 88 ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 L ++ + + + I+ADVVE+LI L++ Sbjct: 357 FDTLHVSELLPIGVREKLGTG----KIKADVVEALIGELHV 393 >gi|38073475|gb|AAR10847.1| MP90 [Trypanosoma cruzi] Length = 779 Score = 42.4 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 10/101 (9%) Query: 34 HSYQESYERLEFLGDRILGLLISTLLFNHFDSA------KEGELSVRFNSLVSAETCSQV 87 H + ++ERLE++GD G +S + F + ++ T + Sbjct: 249 HRRRVAFERLEYIGDNSWGNHLSNRMMVLFPDRQWAYSQNAYSFNCFRDACEMNVTLEFM 308 Query: 88 ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 L ++ + + + I+ADVVE+LI L++ Sbjct: 309 FDTLHVSELLPIGVREKLGTG----KIKADVVEALIGELHV 345 >gi|71419843|ref|XP_811294.1| RNA editing complex protein MP90 [Trypanosoma cruzi strain CL Brener] gi|70875942|gb|EAN89443.1| RNA editing complex protein MP90, putative [Trypanosoma cruzi] Length = 779 Score = 42.4 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 10/101 (9%) Query: 34 HSYQESYERLEFLGDRILGLLISTLLFNHFDSA------KEGELSVRFNSLVSAETCSQV 87 H + ++ERLE++GD G +S + F + ++ T + Sbjct: 249 HRRRVAFERLEYIGDNSWGNHLSNRMMVLFPDRQWAYSQNAYSFNCFRDACEMNVTLEFM 308 Query: 88 ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 L ++ + + + I+ADVVE+LI L++ Sbjct: 309 FDTLHVSELLPIGVREKLGTG----KIKADVVEALIGELHV 345 >gi|71411304|ref|XP_807907.1| RNA editing complex protein MP90 [Trypanosoma cruzi strain CL Brener] gi|70872004|gb|EAN86056.1| RNA editing complex protein MP90, putative [Trypanosoma cruzi] Length = 779 Score = 42.4 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 10/101 (9%) Query: 34 HSYQESYERLEFLGDRILGLLISTLLFNHFDSA------KEGELSVRFNSLVSAETCSQV 87 H + ++ERLE++GD G +S + F + ++ T + Sbjct: 249 HRRRVAFERLEYIGDNSWGNHLSNRMMVLFPDRQWAYSQNAYSFNCFRDACEMNVTLEFM 308 Query: 88 ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 L ++ + + + I+ADVVE+LI L++ Sbjct: 309 FDTLHVSELLPIGVREKLGTG----KIKADVVEALIGELHV 345 >gi|260828967|ref|XP_002609434.1| hypothetical protein BRAFLDRAFT_124637 [Branchiostoma floridae] gi|229294790|gb|EEN65444.1| hypothetical protein BRAFLDRAFT_124637 [Branchiostoma floridae] Length = 1237 Score = 42.4 bits (99), Expect = 0.049, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 3/64 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 D K L W K +TP Y +G RF V + G G SK+ A+ Sbjct: 3 DLKNFLYAWC-GKKKITPNYDF-RAAGSKQRQRFVCEVRVPGYDYVGAGNSTSKKDAQTN 60 Query: 215 AAAE 218 AA + Sbjct: 61 AARD 64 Score = 37.4 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-----AQGMDCSKRA 210 +AK L ++ +Y+ +GPDH+ F + I A+ K+ Sbjct: 142 NAKQRLHQFMQQNRIQA-DYR-YSPTGPDHNRSFVAEMTIFVKQLHRNISAREHGFHKKI 199 Query: 211 AEQVAAAEVLKRE 223 A Q AA ++++ Sbjct: 200 AAQSAALSLVRQL 212 >gi|15220196|ref|NP_178180.1| RTL1 (RNase three-like protein 1); RNA binding / double-stranded RNA binding [Arabidopsis thaliana] gi|75264856|sp|Q9M8N2|RTL1_ARATH RecName: Full=Ribonuclease 3-like protein 1; AltName: Full=Ribonuclease III-like protein 1; Short=RNase III-like protein 1; AltName: Full=Ribonuclease three-like protein 1 gi|6730736|gb|AAF27126.1|AC018849_14 hypothetical protein; 4021-3030 [Arabidopsis thaliana] gi|26449780|dbj|BAC42013.1| unknown protein [Arabidopsis thaliana] gi|28950719|gb|AAO63283.1| At1g80650 [Arabidopsis thaliana] gi|332198311|gb|AEE36432.1| RNAse THREE-like protein 1 [Arabidopsis thaliana] Length = 198 Score = 42.4 bits (99), Expect = 0.049, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 21/51 (41%) Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + +S R AK+ L E +K P Y+ GP H FT V + Sbjct: 104 KDDESKTRRGSAKSVLHEMCASKRWRPPVYECCNVDGPCHLRLFTYKVMVE 154 >gi|268570080|ref|XP_002640687.1| Hypothetical protein CBG19749 [Caenorhabditis briggsae] gi|187023917|emb|CAP36964.1| hypothetical protein CBG_19749 [Caenorhabditis briggsae AF16] Length = 436 Score = 42.4 bits (99), Expect = 0.049, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 5/70 (7%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215 K L ++ Y+ R D RF I G+ + R AEQVA Sbjct: 360 PKMVLHDYLVETKTPKATYETVKRE----DKRFVSTAIIGDKKFRSGIGQPNLRMAEQVA 415 Query: 216 AAEVLKREGI 225 A L I Sbjct: 416 ALAALHGMNI 425 >gi|322491388|emb|CBZ26657.1| putative RNA editing complex protein MP90 [Leishmania mexicana MHOM/GT/2001/U1103] Length = 895 Score = 42.4 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 13/110 (11%) Query: 28 THSSISHSYQES---YERLEFLGDRILGLLISTLLFNHFDS------AKEGELSVRFNSL 78 T S + Y+ +ERLE++GD G IS + + + ++ ++ Sbjct: 244 TVGSCNSHYRRRRVAFERLEYIGDNCWGNNISNRILLLYPDQQWLYSERCSTFTLVRDAC 303 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 V L+L + ++ R ++AD+VE + L+L Sbjct: 304 EMNVNLDFVFDTLELWHLLSTTAHSRLGNG----KVKADLVEGIFGELHL 349 >gi|255719938|ref|XP_002556249.1| KLTH0H08624p [Lachancea thermotolerans] gi|238942215|emb|CAR30387.1| KLTH0H08624p [Lachancea thermotolerans] Length = 238 Score = 42.4 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS-TLLFNHFDSAKEGE--------- 70 ++ + LTH S +H + E+L LG + L S L + + E Sbjct: 81 DIILQCLTHKSFAHGSKPYNEKLAALGMQFLKYHTSVHSLRSAKPLSPVAEGKNQKSING 140 Query: 71 ------LSVRFNSLVSAETCSQVARELDLASFIRVSS--DLRKDVCSFMTSIQADVVESL 122 + L++ +T +QV R L S I L+ + + T++ + V+ +L Sbjct: 141 LNFTNLGTQLSKLLIAKKTTAQVIRSRHLDSLIFWKKRDPLKNESFNGETTVYSGVLSAL 200 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT 159 + + + G + F++K ++ + AKT Sbjct: 201 VGGILVTNGPQKTSQFIEKELLDPKKEASLVQI-AKT 236 >gi|146318846|ref|YP_001198558.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33] gi|145689652|gb|ABP90158.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33] Length = 42 Score = 42.4 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ 37 ++ L G F++ +LLE A TH+S ++ ++ Sbjct: 5 HAKLLADFGIDFSDLNLLETAFTHTSYANEHR 36 >gi|76155978|gb|AAX27226.2| SJCHGC08917 protein [Schistosoma japonicum] Length = 256 Score = 42.4 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 5/101 (4%) Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +Y +G + V +R K L E +P+Y+ Sbjct: 147 IYEEGIKNNSEEIVLSIPYERRFWPD-HGTSPKQILSEHCKLLKWDSPKYETVENR---E 202 Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225 F V + G +K+ AEQ AA L+ G+ Sbjct: 203 KRSFFSAVLVDGRRYRNTSSCKTKKYAEQAAALVCLQVLGL 243 >gi|268573078|ref|XP_002641516.1| C. briggsae CBR-RDE-4 protein [Caenorhabditis briggsae] gi|187031301|emb|CAP29362.1| CBR-RDE-4 protein [Caenorhabditis briggsae AF16] Length = 390 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 16/100 (16%) Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 +D I A +F ++ LQE P Y+ + Sbjct: 157 VDKSIPTAKSF----------PENVPEKNYVGALQEKCQKHKLEAPAYEDSKIEATS--- 203 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK--REGI 225 F V + +G+ + A+ +AA +LK EG+ Sbjct: 204 EFMVTCTMGNQQ-TRGIKPKIKLAKNLAAWLMLKTLEEGV 242 >gi|212722406|ref|NP_001131481.1| hypothetical protein LOC100192817 [Zea mays] gi|194691644|gb|ACF79906.1| unknown [Zea mays] gi|195623306|gb|ACG33483.1| double-stranded RNA binding motif family protein [Zea mays] Length = 184 Score = 42.4 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 11/76 (14%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPAQGMDCS-----KRAA 211 + L + A P + GP H+ FT V V + GL S K+AA Sbjct: 92 SRLPKICKAAGWKEPSFDF-EEQGPPHNRIFTCKVTVHLDGLVNTIMECFSDPKPKKKAA 150 Query: 212 EQVAAAEV---LKREG 224 + AA L+R G Sbjct: 151 RENAAQGALWCLERSG 166 >gi|168058998|ref|XP_001781492.1| predicted protein [Physcomitrella patens subsp. patens] gi|162667033|gb|EDQ53672.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1100 Score = 42.0 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 12/133 (9%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVES---LIAALY--LDGG-IEVAGTFVDKYWKQRALK 149 ++R+ +L + + + + + E L+ A++ LD E + TF K + L Sbjct: 961 YLRLRKELDDLISRKLANPEMSIYEEGKVLMRAVFEVLDADQCEGSFTFGRKVKASKPLT 1020 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSK 208 D K LQ P Y+ G + +E+ G G SK Sbjct: 1021 RSSDSSDVKGLLQTLLLRAGKKPPVYRTRMVKGN----LYQSSIEVKGRG-FTGDPASSK 1075 Query: 209 RAAEQVAAAEVLK 221 + AE+ +A L+ Sbjct: 1076 KVAEKNVSAMALE 1088 >gi|145361138|ref|NP_680142.2| ATP binding / ATP-dependent helicase/ double-stranded RNA binding / helicase/ nucleic acid binding [Arabidopsis thaliana] gi|10178028|dbj|BAB11511.1| ATP-dependent RNA helicase A-like protein [Arabidopsis thaliana] gi|332003418|gb|AED90801.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana] Length = 1161 Score = 42.0 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 21/150 (14%) Query: 81 AETCSQVAREL--DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 ++ +L +L ++ + V+ L+A +G Sbjct: 981 DPNLAESYVKLKEELDKLLQKKLEDPSMDIHKEGKYLMLAVQELVAGDQCEGRFVFGRD- 1039 Query: 139 VDKYWKQRALKSGKFRRD---AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVV 193 K Q + K +D K+ LQ P+YK H F +V Sbjct: 1040 -TKRPSQPQIGENKHSKDGTNPKSLLQTLLMRAGHSPPKYKTK------HLKTNEFRALV 1092 Query: 194 EISGLAPAQGMD---CSKRAAEQVAAAEVL 220 E G+ + +K AE+ AA E L Sbjct: 1093 EFKGMQF---VGKPQRNKTLAEKDAAVEAL 1119 >gi|195566706|ref|XP_002106918.1| GD17163 [Drosophila simulans] gi|194204313|gb|EDX17889.1| GD17163 [Drosophila simulans] Length = 460 Score = 42.0 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 6/69 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 KT+L A P Y+ D F + + + +K+ AEQ A Sbjct: 382 PKTQLYVHAVKAGKSPPAYETQQC-----DKLFRSICTYDDQRFSSSYWEKNKKQAEQGA 436 Query: 216 AAEVLKREG 224 A L G Sbjct: 437 ALVALLHLG 445 >gi|123875484|sp|Q0H8C5|NSP1N_ROTB2 RecName: Full=Non-structural protein 1; Short=NSP1 gi|77020780|gb|ABA60392.1| non-structural protein NSP1 [Human rotavirus B219] Length = 395 Score = 42.0 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 20/144 (13%) Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG---IEVAGT 137 + E +L S + ++ SI+ I +L ++ Sbjct: 265 ERVLNYKICEENLDSHLACANHENVY-----KSIKKYEFFDSIWVYHLANSSWVRDLTRE 319 Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 ++ ++ L E + + P Y++ H + Sbjct: 320 CIESNPGPNYIQ----------LLNEHSQRYGFIQPTYEIIAVVSDGHH-SYQCTCYYKD 368 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221 Q + SK+ A+ AA ++ + Sbjct: 369 TK-TQSIGPSKKNAKHQAAEQMFR 391 >gi|73979761|ref|XP_540087.2| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 2 [Canis familiaris] Length = 152 Score = 42.0 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ G HD F + VE+ G +G + Sbjct: 49 KNPIMELNEKRRGL--KYELLSEPGGSHDKHFVMEVEVDGQK-FRGAGPN 95 >gi|255546785|ref|XP_002514451.1| ATP-dependent RNA helicase, putative [Ricinus communis] gi|223546447|gb|EEF47947.1| ATP-dependent RNA helicase, putative [Ricinus communis] Length = 1129 Score = 42.0 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 13/83 (15%) Query: 144 KQRALKSGKFRRD---AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGL 198 K + +F +D K+ LQ P+YK H F +VE G+ Sbjct: 1014 KPKESSESRFTKDGTNPKSLLQTLLMRAGHSPPKYKTK------HLKTNEFRALVEFKGM 1067 Query: 199 APAQGM-DCSKRAAEQVAAAEVL 220 G +K+ AE+ AA E L Sbjct: 1068 Q-FVGKPKKNKQLAERDAAIEAL 1089 >gi|315583578|pdb|3P1X|A Chain A, Crystal Structure Of Drbm 2 Domain Of Interleukin Enhancer-Binding Factor 3 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4527e gi|315583579|pdb|3P1X|B Chain B, Crystal Structure Of Drbm 2 Domain Of Interleukin Enhancer-Binding Factor 3 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4527e Length = 75 Score = 42.0 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + K + E + G+ +Y++ +G HD RF VE+ G QG + Sbjct: 2 LTKHGKNPVXELNEKRRGL--KYELISETGGSHDKRFVXEVEVDGQK-FQGAGSN 53 >gi|118365014|ref|XP_001015728.1| Double-stranded RNA binding motif family protein [Tetrahymena thermophila] gi|89297495|gb|EAR95483.1| Double-stranded RNA binding motif family protein [Tetrahymena thermophila SB210] Length = 755 Score = 42.0 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 18/36 (50%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F+ + I G +G+ SK+ A + A+ L + G Sbjct: 248 FSSYLIIDGKHYPKGIGKSKKDAREEASMNALAKMG 283 >gi|159163149|pdb|1UIL|A Chain A, Double-Stranded Rna-Binding Motif Of Hypothetical Protein Bab28848 Length = 113 Score = 42.0 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210 +AK L ++ + + EYK T GPDH+ F + I + + +K+ Sbjct: 27 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 84 Query: 211 AEQVAAAEVLKRE 223 A Q A ++++ Sbjct: 85 AAQSCALSLVRQL 97 >gi|303319779|ref|XP_003069889.1| RNase3 domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240109575|gb|EER27744.1| RNase3 domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|320034181|gb|EFW16126.1| hypothetical protein CPSG_07176 [Coccidioides posadasii str. Silveira] Length = 267 Score = 42.0 bits (98), Expect = 0.062, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 22/145 (15%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN-------------------HFDS 65 +A+TH S + +RL +LG +++ L + L S Sbjct: 116 QAVTHKSFDQGRRGFNDRLAYLGKQLVTLQATLALIQDPASYSQKLPADPYNRTPFQHPS 175 Query: 66 AKEGEL--SVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESL 122 + E+ S +L+S + + + R+ +L +R + S ++ + + ++ Sbjct: 176 LEGLEVLSSPTLETLMSKKRLAALGRQYELDGVMRWIPRKPSDFQLSGISVVLTQAMYAV 235 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA 147 + A+ L+ G VA + Sbjct: 236 VGAVALEKGGAVANQVARNRILKPL 260 >gi|119183345|ref|XP_001242722.1| hypothetical protein CIMG_06618 [Coccidioides immitis RS] Length = 267 Score = 42.0 bits (98), Expect = 0.062, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 22/145 (15%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN-------------------HFDS 65 +A+TH S + +RL +LG +++ L + L S Sbjct: 116 QAVTHKSFDQGRRGFNDRLAYLGKQLVTLQATLALIQDPASYSQKLPADPYNRTPFQHPS 175 Query: 66 AKEGEL--SVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESL 122 + E+ S +L+S + + + R+ +L +R + S ++ + + ++ Sbjct: 176 LEGLEVLSSPTLETLMSKKRLAALGRQYELDGVMRWIPRKPSDFQLSGISVVLTQAMYAV 235 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA 147 + A+ L+ G VA + Sbjct: 236 VGAVALEKGGAVANQVARNRILKPL 260 >gi|297842797|ref|XP_002889280.1| hypothetical protein ARALYDRAFT_316895 [Arabidopsis lyrata subsp. lyrata] gi|297335121|gb|EFH65539.1| hypothetical protein ARALYDRAFT_316895 [Arabidopsis lyrata subsp. lyrata] Length = 190 Score = 42.0 bits (98), Expect = 0.065, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 17/40 (42%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 AK+ L E +K P Y+ GP H FT V + Sbjct: 97 AKSVLHEICASKRWRPPVYECCKVDGPCHLRLFTYKVVVE 136 >gi|297806475|ref|XP_002871121.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297316958|gb|EFH47380.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 1160 Score = 42.0 bits (98), Expect = 0.065, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 19/116 (16%) Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD---AKTELQEWAHAKF 169 V+ L+A +G K Q+ + K +D K+ LQ Sbjct: 1018 KYLMLAVQELVAGDQCEGRFVFGRD--TKRPSQQQIGENKHSKDGTNPKSLLQTLLMRAG 1075 Query: 170 GVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGMD---CSKRAAEQVAAAEVL 220 P+YK H F +VE G+ + +K AE+ AA E L Sbjct: 1076 HSPPKYKTK------HLKTNEFRALVEFKGMQF---VGKPQRNKTLAEKDAAVEAL 1122 >gi|224060035|ref|XP_002194744.1| PREDICTED: similar to mitochondrial ribosomal protein L44 [Taeniopygia guttata] Length = 327 Score = 42.0 bits (98), Expect = 0.066, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 63/213 (29%), Gaps = 40/213 (18%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLG---DRI-----------------LGLLISTLLF 60 LL+ A + S + RL LG D + ++ Sbjct: 81 DLLKTAFVNPCYIESEEA---RLRQLGRDKDAVALQLQDNTGLAERGLRFARAYLAQCFE 137 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS---IQAD 117 + + N L S E S VA+ L + C + + Sbjct: 138 GAYPELPAKGVEALVNFLTSQELVSYVAQNLSIQDLAL---------CRDFPAPPDVLQR 188 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTP 173 ++I AL G E G FV ++ + + F + L E + P Sbjct: 189 TFLAVIGALLESSGPERTGIFVRDFFIPQLIGKDLFEIWKVVNPMGLLLEELTKRNISAP 248 Query: 174 EYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMD 205 E ++T + G P + V + A+G Sbjct: 249 EPRITRQLGVSTVLPVYFVGLYCDKKILAEGPG 281 >gi|45187851|ref|NP_984074.1| ADL023Wp [Ashbya gossypii ATCC 10895] gi|44982635|gb|AAS51898.1| ADL023Wp [Ashbya gossypii ATCC 10895] Length = 228 Score = 42.0 bits (98), Expect = 0.066, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 15/135 (11%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +L + LTH S ++S + E+L LG ++L S L A + V+ Sbjct: 72 DILLQCLTHKSFANSAKPYNEKLSLLGGQLLKWYAS-ALTVQQPGAAGVQQKPVNGLNVA 130 Query: 81 A------------ETCSQVARELDLASFIRVSSDLRKDVCSFM--TSIQADVVESLIAAL 126 + S+ R D+ I + + F ++ V+++LI + Sbjct: 131 NLGHEPYTLWTDSKVISEHMRTRDVDDLIFWNKRDSRATEKFNGLPKVRTTVLQALIGSS 190 Query: 127 YLDGGIEVAGTFVDK 141 G E FV + Sbjct: 191 LTFNGEEKTAKFVLE 205 >gi|310644225|ref|YP_003948984.1| ribonuclease iii [Paenibacillus polymyxa SC2] gi|309249176|gb|ADO58743.1| Ribonuclease III [Paenibacillus polymyxa SC2] Length = 152 Score = 42.0 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 21/112 (18%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 L ++GD + + + L H + + L R LVSA+ R L L + +D Sbjct: 34 LAYIGDAVYEVAVRQYLLAH-PNLRPNHLHRRATKLVSAKA---QCRILGLLETVL--TD 87 Query: 103 LRKDVCSFMTSI---------------QADVVESLIAALYLDGGIEVAGTFV 139 +D+ + A +E LI LY DG ++ + Sbjct: 88 EERDIVRQGRNAKSGSLPKNADVLEYRHATALEGLIGYLYCDGHLDRLTELI 139 >gi|115613122|ref|XP_001177698.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115975098|ref|XP_001191759.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 321 Score = 42.0 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 69/223 (30%), Gaps = 29/223 (13%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +R G F N + A TH S ++S R E +G L + + Sbjct: 79 AFCQRFGEEF-NGETVRTAFTHKSYVEKEEKS--RRE-MG-----------LLDQDAKLQ 123 Query: 68 EGELSVRFNSLV--SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 + + N+ S++ + R L + T I + + + Sbjct: 124 LDDNTQLVNAGYQFSSDYIAGYLRH-ALPKVPEEGYRRMEKKNYKYTKIHTKMNKDNV-- 180 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK----FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 G++ AG FV + + + + + L + + PE ++ + Sbjct: 181 ----KGMDRAGLFVRDFIIPQLMDKDLCDVWLIDNPMSLLVQVLADQQREEPEARLLREA 236 Query: 182 GPD-HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G + P F V + S AE AA L+ Sbjct: 237 GKNTFTPLFMVGIYSDKKLLGWAPGESVTIAEDEAARVALRNL 279 >gi|291224210|ref|XP_002732100.1| PREDICTED: mitochondrial ribosomal protein L44-like [Saccoglossus kowalevskii] Length = 372 Score = 42.0 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 57/211 (27%), Gaps = 28/211 (13%) Query: 19 NRSLLEKALTHSSISHS-----------------YQESYERLEFLGDRILGLLISTLLFN 61 N L A H + E L G I + L + Sbjct: 98 NVETLRAAFNHREYTEDEAAKRRELRMDENIPLLNIPDNEELAEKGFIFSSEYIKSYLRS 157 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + N L E + R L + IR I + Sbjct: 158 AYPKFPDEGVKSVSNYLTDVEISCHIGRNLGVYDLIRYPEFP------HPEEIIQKTFFA 211 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKV 177 +I +L D G + G FV + + + R D L ++ + PE ++ Sbjct: 212 VIGSLLQDKGADRTGIFVRDFILAQLIGKDINRFWDILDPMKRLSDYLETQKQELPESRI 271 Query: 178 TFRSGPDHD-PRFTVVVEISGLAPAQGMDCS 207 +SG + V V + S Sbjct: 272 IRQSGASTLVAMYIVGVYSNKQILGFAPGVS 302 >gi|290562111|gb|ADD38452.1| Double-stranded RNA-specific editase 1 [Lepeophtheirus salmonis] Length = 296 Score = 42.0 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 7/77 (9%) Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + L R L E + GV Y + P F + V + G +G Sbjct: 216 KKLPDNPTERHPVQLLNEI---QGGVN--YALVREK-PTTPVIFVMSVTVDG-VTFEGEG 268 Query: 206 CSKRAAEQVAAAEVLKR 222 +K+ +++ A LK+ Sbjct: 269 KNKKDSKRNCALAALKK 285 >gi|291065638|gb|ADD73908.1| dsRNA binding protein [Banna virus] Length = 207 Score = 42.0 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 D + + +A ++ ++ GP HDPRF + ++ Q D SK+ A Q Sbjct: 1 MDPVSVVHNFARSQGLPL-NFETVGCEGPSHDPRFVIECKLLDFKH-QCTDSSKKRAIQK 58 >gi|31324225|gb|AAP47192.1| Mrpl15p [Eremothecium gossypii] Length = 165 Score = 42.0 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 15/135 (11%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +L + LTH S ++S + E+L LG ++L S L A + V+ Sbjct: 9 DILLQCLTHKSFANSAKPYNEKLSLLGGQLLKWYAS-ALTVQQPGAAGVQQKPVNGLNVA 67 Query: 81 A------------ETCSQVARELDLASFIRVSSDLRKDVCSFM--TSIQADVVESLIAAL 126 + S+ R D+ I + + F ++ V+++LI + Sbjct: 68 NLGHEPYTLWTDSKVISEHMRTRDVDDLIFWNKRDSRATEKFNGLPKVRTTVLQALIGSS 127 Query: 127 YLDGGIEVAGTFVDK 141 G E FV + Sbjct: 128 LTFNGEEKTAKFVLE 142 >gi|157137141|ref|XP_001663906.1| RNA binding protein, putative [Aedes aegypti] gi|108869786|gb|EAT34011.1| RNA binding protein, putative [Aedes aegypti] Length = 289 Score = 42.0 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-SGLAPAQGM 204 + L E ++ G+TP+Y + R G H+ F+ V G A G Sbjct: 62 PVSLLYELL-SRRGITPQYDLLPREGAAHEQTFSYRVSYPDGDAIGTGQ 109 >gi|226479846|emb|CAX73219.1| dihydrouridine synthase 2-like, SMM1 homolog [Schistosoma japonicum] Length = 511 Score = 42.0 bits (98), Expect = 0.070, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 5/101 (4%) Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +Y +G + V +R K L E +P+Y+ Sbjct: 402 VYEEGIKNNSEEIVLSIPYERRFWPD-HGTSPKQILSEHCKLLKWDSPKYETVENR---E 457 Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225 F V + G +K+ AEQ AA L+ G+ Sbjct: 458 KRSFFSAVLVDGRRYRNTSSCKTKKYAEQAAALVCLQVLGL 498 >gi|330842808|ref|XP_003293362.1| hypothetical protein DICPUDRAFT_83923 [Dictyostelium purpureum] gi|325076314|gb|EGC30110.1| hypothetical protein DICPUDRAFT_83923 [Dictyostelium purpureum] Length = 376 Score = 42.0 bits (98), Expect = 0.070, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 16/158 (10%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS +S+++ R +L+ S + ++ EF GD L IST L Sbjct: 1 MSINFHSSIQSL-----KERGILKICFLPKS----QFDKFQVSEFHGDVTLSYQISTFLL 51 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N+ L+ + S + S + ++ +FI S + T +ADV+E Sbjct: 52 NYKPFFTPHLLTELRSLSSSNQILSDFFKLFEIQTFI---STEEVQ--EYSTKSRADVIE 106 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158 ++I+ L + + K + G+ + K Sbjct: 107 AMISE--LSQSSDPDAQLLLKSIIGFLIGWGERDFNLK 142 >gi|115530718|emb|CAL49304.1| novel protein similar to staufen [Xenopus (Silurana) tropicalis] Length = 351 Score = 42.0 bits (98), Expect = 0.070, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K ++ ++VT +GP H F V + G +G S Sbjct: 313 KRNMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGEGEGKS 351 >gi|198426942|ref|XP_002131661.1| PREDICTED: similar to Zfr protein [Ciona intestinalis] Length = 1004 Score = 42.0 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 7/69 (10%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-----GLAPAQGMDCSKRAAEQV 214 L ++ + +P++K GP+H F ++++ + A +K+ A V Sbjct: 364 RLNQFCQREH-TSPDFK-HETHGPEHARIFVCELKLNVSSVQKVLLASERGSNKKQATAV 421 Query: 215 AAAEVLKRE 223 A ++++ Sbjct: 422 CALSMIRQL 430 >gi|322504799|emb|CBZ14585.1| putative nuclease [Leishmania braziliensis MHOM/BR/75/M2904] Length = 936 Score = 42.0 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 22/111 (19%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS------AKEGELSVRFNSLVSAET 83 SS + +++RLE++GD G IS+ + + + ++ ++ Sbjct: 282 SSHYRRRRVAFDRLEYIGDNCWGTNISSRIMLLYPDQQWLYSERCSTFTLVRDACEMNVN 341 Query: 84 CSQVARELDLASFI------RVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 V L+L + R+ + ++AD+VE + L+L Sbjct: 342 LDFVFDTLELWHLLSATAHSRLGNG----------KVKADLVEGIFGELHL 382 >gi|321457636|gb|EFX68719.1| hypothetical protein DAPPUDRAFT_114306 [Daphnia pulex] Length = 221 Score = 41.6 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 72/211 (34%), Gaps = 51/211 (24%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSS 101 +EF+ D + + + + DS + + V +T +A + + ++I+ +S Sbjct: 19 MEFM-DY-MDRISAHVETIEKDSETTKPVQECATACVCNDTFGMLAAKRNFHAYIQNLSP 76 Query: 102 DLRKDVCSF----------------------------MTSIQADVVESLIAALYLDG--G 131 +L K + F + + ADV E++ A+ D Sbjct: 77 NLVKHLEDFLEFAESENFAPFDRELAENEEIIATQVAIPTFLADVFEAVAGAVITDSNLS 136 Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG---PDHDPR 188 E + + + TP ++F+ G PD P Sbjct: 137 FETLEKVFVPFMNSVYDTPPISPFN-----------QLEKTPG--ISFQKGKARPDGRPT 183 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 F V +G+ A G+D +++ A+ A+ Sbjct: 184 F--SVYQNGVLLATGIDENRKNAKFAASKYA 212 >gi|208690905|gb|ACI31228.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Hylobates alibarbis] Length = 551 Score = 41.6 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 17/41 (41%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV Y+ SGP HD RFT V I + S Sbjct: 19 QKQGVVLRYQELPNSGPPHDRRFTFRVIIDEREFPEAEGRS 59 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 L K +T Y+ G F ++ + +K+ A+Q+AA Sbjct: 104 LINRIAQKKRLTVNYEQCGW-GMHGTKGFHYKCKMGQKEYSIATGSTKQEAKQLAAKLA 161 >gi|255558801|ref|XP_002520424.1| ATP-dependent RNA helicase, putative [Ricinus communis] gi|223540409|gb|EEF41979.1| ATP-dependent RNA helicase, putative [Ricinus communis] Length = 1058 Score = 41.6 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 31/141 (21%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + DL + + +E + D +++ +++ L Sbjct: 893 LLLFGGDLSRGGLDGHLKMLGGYLEFFMKPALADT-YLSLKRELEELIQKKLL------- 944 Query: 156 DAKTELQ---EWA----------HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 D K ++Q E + P YK + +F V +GL Sbjct: 945 DPKLDIQSHNELLMAIRLLVSEDQCEGHGPPTYKTKQLK----NNQFRSTVIFNGLNF-- 998 Query: 203 GMD---CSKRAAEQVAAAEVL 220 + +K+ AE+ AAAE L Sbjct: 999 -VGQPCNTKKLAEKDAAAEAL 1018 >gi|210623153|ref|ZP_03293608.1| hypothetical protein CLOHIR_01558 [Clostridium hiranonis DSM 13275] gi|210153797|gb|EEA84803.1| hypothetical protein CLOHIR_01558 [Clostridium hiranonis DSM 13275] Length = 131 Score = 41.6 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 10/109 (9%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD---LASFIRV 99 L +LGD + I L + K L + V+A S+V ++ +R+ Sbjct: 14 LAYLGDTVYESYIREYLIKKNCNNKVNTLHKQAIKYVNANAQSKVIHTIENDLTEEEMRI 73 Query: 100 SSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVDK 141 R + A E+LI LYLD I+ V + Sbjct: 74 FKRGRNQKSNTAPKNMDIVDYKHATGFEALIGYLYLDKQIDRLEEIVRR 122 >gi|208690907|gb|ACI31229.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Symphalangus syndactylus] Length = 551 Score = 41.6 bits (97), Expect = 0.076, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 17/41 (41%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV Y+ SGP HD RFT V I + S Sbjct: 19 QKQGVVLRYQELPNSGPPHDRRFTFRVIIDEREFPEAEGRS 59 Score = 41.6 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 6/58 (10%) Query: 164 WAHAKFGVTPEYKVTF--RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +A K T Y+ GP F ++ + +K+ A+Q+AA Sbjct: 108 FAQKKRL-TVNYEQCGWGVHGP---KGFHYKCKMGQKEYSIATGSTKQEAKQLAAKLA 161 >gi|322490686|emb|CBZ25948.1| RNA editing complex protein MP61 [Leishmania mexicana MHOM/GT/2001/U1103] Length = 580 Score = 41.6 bits (97), Expect = 0.076, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 53/117 (45%), Gaps = 14/117 (11%) Query: 18 ANRSLLEKALTHS---SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA---KEGEL 71 +R +L +A S S + + +ERLEF+GD ++ ++++++ F +G++ Sbjct: 231 KDRGILVEAFNVSDTLSTNSARSWEFERLEFVGDNVVKYVLNSIISCAFPPHEGGTKGKV 290 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 + + + ++ LDL ++ ++D+VE+L A L + Sbjct: 291 TCFQFVMDGNDGLARGYDHLDLQQL--------ASSSRVVSKFKSDIVETLFAELQM 339 >gi|45593576|gb|AAS68265.1| VP12 [Coltivirus strain YN-6] Length = 207 Score = 41.6 bits (97), Expect = 0.076, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 D + + +A ++ ++ GP HDPRF + ++ Q D SK+ A Q Sbjct: 1 MDPVSVVHNFARSQGLPL-NFETVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 58 >gi|297803978|ref|XP_002869873.1| hypothetical protein ARALYDRAFT_492708 [Arabidopsis lyrata subsp. lyrata] gi|297315709|gb|EFH46132.1| hypothetical protein ARALYDRAFT_492708 [Arabidopsis lyrata subsp. lyrata] Length = 965 Score = 41.6 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 17/36 (47%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF+V +S +G+ S+R A AA ++ Sbjct: 753 RFSVEAWLSNEKIGEGIGKSRREALHKAAEASIQNL 788 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 11/68 (16%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPD------HDPRFTVVVEISGLAPAQGMDCSKRAAE 212 T L+E ++ ++++F+S H VEI G +G+ + A Sbjct: 856 TALRELCASEG-----FEMSFQSQRPLPSDMVHRDELRAQVEIDGRVVGEGVGSTWDEAR 910 Query: 213 QVAAAEVL 220 AA L Sbjct: 911 MQAAERAL 918 >gi|170285302|gb|AAI61331.1| Unknown (protein for IMAGE:7619279) [Xenopus (Silurana) tropicalis] Length = 145 Score = 41.6 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + LQE+ + G TP Y + G H P FT V + + Sbjct: 10 PISLLQEYG-TRVGKTPVYDLLKAEGQAHQPNFTFRVSVGDI 50 >gi|205318897|gb|ACI02440.1| VP12 [Banna virus] Length = 207 Score = 41.6 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 D + + +A ++ ++ GP HDPRF + ++ Q D SK+ A Q Sbjct: 1 MDPVSVVHNFARSQGLPL-NFETVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 58 >gi|221039636|dbj|BAH11581.1| unnamed protein product [Homo sapiens] Length = 137 Score = 41.6 bits (97), Expect = 0.080, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA--QGMDC 206 + LQE+ + G TP Y + G H P FT V + + +G+ Sbjct: 31 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCIGEEGLGS 81 >gi|3850263|gb|AAC72057.1| Vp12 [Banna virus] gi|45593574|gb|AAS68264.1| VP12 [Coltivirus strain BJ95-75] Length = 207 Score = 41.6 bits (97), Expect = 0.080, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 D + + +A ++ ++ GP HDPRF + ++ Q D SK+ A Q Sbjct: 1 MDPVSVVHNFARSQGLPL-NFETVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 58 >gi|110738453|dbj|BAF01152.1| hypothetical protein [Arabidopsis thaliana] Length = 967 Score = 41.6 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 168 KFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K G EYK + + D RF+V +S +G+ S+R A AA ++ Sbjct: 737 KCGAKVEYKPSLVSST----DLRFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQNL 790 Score = 38.9 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPD---HDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 T L+E ++ ++ + R P H VEI G +G+ + A A Sbjct: 858 TALRELCASEGLEM-AFQ-SQRQLPSDMVHRDELHAQVEIDGRVVGEGVGSTWDEARMQA 915 Query: 216 AAEVL 220 A L Sbjct: 916 AERAL 920 >gi|62321227|dbj|BAD94401.1| putative protein [Arabidopsis thaliana] Length = 614 Score = 41.6 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 168 KFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K G EYK + + D RF+V +S +G+ S+R A AA ++ Sbjct: 384 KCGAKVEYKPSLVSST----DLRFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQNL 437 Score = 38.9 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPD---HDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 T L+E ++ ++ + R P H VEI G +G+ + A A Sbjct: 505 TALRELCASEGLEM-AFQ-SQRQLPSDMVHRDELHAQVEIDGRVVGEGVGSTWDEARMQA 562 Query: 216 AAEVL 220 A L Sbjct: 563 AERAL 567 >gi|79481163|ref|NP_193898.3| CPL1 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1); double-stranded RNA binding / nucleotide phosphatase [Arabidopsis thaliana] gi|75111335|sp|Q5YDB6|CPL1_ARATH RecName: Full=RNA polymerase II C-terminal domain phosphatase-like 1; Short=FCP-like 1; AltName: Full=Carboxyl-terminal phosphatase-like 1; Short=AtCPL1; Short=CTD phosphatase-like 1; AltName: Full=Protein FIERY 2; AltName: Full=Protein JASMONATE OVEREXPRESSING 1 gi|49175305|gb|AAT52022.1| C-terminal domain phosphatase-like 1 [Arabidopsis thaliana] gi|332659088|gb|AEE84488.1| RNA polymerase II C-terminal domain phosphatase-like 1 [Arabidopsis thaliana] Length = 967 Score = 41.6 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 168 KFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K G EYK + + D RF+V +S +G+ S+R A AA ++ Sbjct: 737 KCGAKVEYKPSLVSST----DLRFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQNL 790 Score = 38.9 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPD---HDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 T L+E ++ ++ + R P H VEI G +G+ + A A Sbjct: 858 TALRELCASEGLEM-AFQ-SQRQLPSDMVHRDELHAQVEIDGRVVGEGVGSTWDEARMQA 915 Query: 216 AAEVL 220 A L Sbjct: 916 AERAL 920 >gi|4455275|emb|CAB36811.1| putative protein [Arabidopsis thaliana] gi|7268964|emb|CAB81274.1| putative protein [Arabidopsis thaliana] Length = 995 Score = 41.6 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 168 KFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K G EYK + + D RF+V +S +G+ S+R A AA ++ Sbjct: 751 KCGAKVEYKPSLVSST----DLRFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQNL 804 Score = 38.9 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPD---HDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 T L+E ++ ++ + R P H VEI G +G+ + A A Sbjct: 872 TALRELCASEGLEM-AFQ-SQRQLPSDMVHRDELHAQVEIDGRVVGEGVGSTWDEARMQA 929 Query: 216 AAEVL 220 A L Sbjct: 930 AERAL 934 >gi|193690494|ref|XP_001952087.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Acyrthosiphon pisum] Length = 456 Score = 41.6 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 6/65 (9%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215 KT+L WA P+Y F V + + +KR AEQ + Sbjct: 379 PKTKLLNWAKKHNKPLPKYHTEQFE-----KLFKSTVTFDNQKYSSSFWEKNKRWAEQGS 433 Query: 216 AAEVL 220 A L Sbjct: 434 AIVCL 438 >gi|148703150|gb|EDL35097.1| testis nuclear RNA binding protein [Mus musculus] Length = 556 Score = 41.6 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 122 KKLPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 180 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 181 YKTGLGQNKKESRSNAAKLALDEL 204 >gi|123263539|emb|CAM28065.1| adenosine deaminase domain containing 1 (testis specific) [Mus musculus] Length = 218 Score = 41.6 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 122 KKLPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 180 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 181 YKTGLGQNKKESRSNAAKLALDEL 204 >gi|123263540|emb|CAM28066.1| adenosine deaminase domain containing 1 (testis specific) [Mus musculus] Length = 178 Score = 41.6 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 82 KKLPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 140 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 141 YKTGLGQNKKESRSNAAKLALDEL 164 >gi|115528969|gb|AAI07347.1| Adad1 protein [Mus musculus] Length = 222 Score = 41.6 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 122 KKLPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 180 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 181 YKTGLGQNKKESRSNAAKLALDEL 204 >gi|153945870|ref|NP_033376.2| adenosine deaminase domain-containing protein 1 [Mus musculus] gi|81871891|sp|Q5SUE7|ADAD1_MOUSE RecName: Full=Adenosine deaminase domain-containing protein 1; AltName: Full=Testis nuclear RNA-binding protein gi|56238160|emb|CAI26206.1| adenosine deaminase domain containing 1 (testis specific) [Mus musculus] gi|123272971|emb|CAM18412.1| adenosine deaminase domain containing 1 (testis specific) [Mus musculus] gi|183396967|gb|AAI65984.1| Adenosine deaminase domain containing 1 (testis specific) [synthetic construct] Length = 619 Score = 41.6 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 122 KKLPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 180 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 181 YKTGLGQNKKESRSNAAKLALDEL 204 >gi|673456|emb|CAA59168.1| testis nuclear RNA binding protein [Mus musculus] Length = 619 Score = 41.6 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 122 KKLPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 180 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 181 YKTGLGQNKKESRSNAAKLALDEL 204 >gi|195147336|ref|XP_002014636.1| GL19287 [Drosophila persimilis] gi|194106589|gb|EDW28632.1| GL19287 [Drosophila persimilis] Length = 314 Score = 41.6 bits (97), Expect = 0.084, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 8/72 (11%) Query: 155 RDAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 D K+ LQE+ P+Y G D + + + + + G SKR + Sbjct: 1 MDKKSAVSNLQEFCAKSKIPVPKYDYID--GEDGG--YICKIVLMDIE-SYGNGRSKRDS 55 Query: 212 EQVAAAEVLKRE 223 + +AA+ ++K+ Sbjct: 56 KHLAASNIIKKL 67 Score = 39.3 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217 EL+++ P ++ + G P F ++ + S K+ A Q AA Sbjct: 102 ELRDYCVRHEMPLPLIEIVQQCGTPDAPEFLACCSVASIKR---YGKSDKKKDARQRAAI 158 Query: 218 EVL 220 E+L Sbjct: 159 EML 161 >gi|198473861|ref|XP_001356477.2| GA20129 [Drosophila pseudoobscura pseudoobscura] gi|198138140|gb|EAL33541.2| GA20129 [Drosophila pseudoobscura pseudoobscura] Length = 314 Score = 41.6 bits (97), Expect = 0.084, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 8/72 (11%) Query: 155 RDAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 D K+ LQE+ P+Y G D + + + + + G SKR + Sbjct: 1 MDKKSAVSNLQEFCAKSKIPVPKYDYID--GEDGG--YICKIVLMDIE-SYGNGRSKRDS 55 Query: 212 EQVAAAEVLKRE 223 + +AA+ ++K+ Sbjct: 56 KHLAASNIMKKL 67 Score = 39.3 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217 EL+++ P ++ + G P F ++ + S K+ A Q AA Sbjct: 102 ELRDYCVRHEMPLPLIEIVQQCGTPDAPEFLACCSVASIKR---YGKSDKKKDARQRAAI 158 Query: 218 EVL 220 E+L Sbjct: 159 EML 161 >gi|205318893|gb|ACI02438.1| VP12 [Banna virus] Length = 207 Score = 41.6 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 D + + +A ++ ++ GP HDPRF + ++ Q D SK+ A Q Sbjct: 1 MDPVSVVHNFARSQGLPL-NFETVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 58 >gi|302783689|ref|XP_002973617.1| hypothetical protein SELMODRAFT_173599 [Selaginella moellendorffii] gi|300158655|gb|EFJ25277.1| hypothetical protein SELMODRAFT_173599 [Selaginella moellendorffii] Length = 807 Score = 41.6 bits (97), Expect = 0.087, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 18/34 (52%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +F V V +G A+G+ + R A A+ + L+ Sbjct: 617 QFCVEVTFNGEKIARGVGRTSRDARSRASEDALR 650 >gi|332246794|ref|XP_003272537.1| PREDICTED: adenosine deaminase domain-containing protein 2 isoform 2 [Nomascus leucogenys] Length = 662 Score = 41.6 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%) Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V GP F+V VE+ G+ G SK A+Q AA L Sbjct: 204 VVEELGP--CFPFSVSVELDGVVCPAGTANSKTEAKQQAALSAL 245 >gi|114663872|ref|XP_001150748.1| PREDICTED: adenosine deaminase domain-containing protein 2 isoform 1 [Pan troglodytes] Length = 665 Score = 41.6 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%) Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V GP F+V VE+ G+ G SK A+Q AA L Sbjct: 207 VVEELGP--CFPFSVSVELDGVVCPAGTANSKTEAKQQAALSAL 248 >gi|18027282|gb|AAL55730.1|AF281068_1 TAR RNA-binding protein TRBP1 [Homo sapiens] Length = 53 Score = 41.6 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + LQE+ + G TP Y + G H P FT V + Sbjct: 10 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD 49 >gi|18027283|gb|AAL55731.1|AF281068_2 TAR RNA-binding protein TRBP2 [Homo sapiens] Length = 74 Score = 41.6 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + LQE+ + G TP Y + G H P FT V + Sbjct: 31 PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD 70 >gi|281203094|gb|EFA77295.1| putative dTDP-D-glucose 4,6-dehydratase [Polysphondylium pallidum PN500] Length = 291 Score = 41.6 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 24/176 (13%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L S++E Y F ++L+ L + D ++ ST + N Sbjct: 59 NLLNLSSVEHD-NYRFCKGNILDSVLLDRLFTEESNI---------DTVIHFAASTHVDN 108 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F E ++ N+++ + +R + FI +S+D V I Sbjct: 109 SF----ESSINFTENNILGTHYLLECSRRHRVQRFIYISTDEVGIVGE----IYN----- 155 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 I + I+VA T +D + + +K+ + E+ + Y + Sbjct: 156 -IGTDFEISNIQVAQTLIDILYPDDKNNNNGGDHVSKSNMLEYVQDRPFNDQRYHL 210 >gi|256080282|ref|XP_002576411.1| tRNA-dihydrouridine synthase [Schistosoma mansoni] gi|238661678|emb|CAZ32648.1| tRNA-dihydrouridine synthase, putative [Schistosoma mansoni] Length = 492 Score = 41.6 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 6/71 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLAPAQGMD-CSKRAAEQV 214 K L+E +P+Y+ D D R F V + G SK+ AEQ Sbjct: 408 PKQILREHCKLLKWDSPKYETIE----DRDKRSFFSTVLVDGRRYRNTSACKSKKYAEQA 463 Query: 215 AAAEVLKREGI 225 A L GI Sbjct: 464 AVLVCLHVLGI 474 >gi|148679660|gb|EDL11607.1| mCG11408 [Mus musculus] Length = 243 Score = 41.6 bits (97), Expect = 0.092, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 A GV+ + +GP F+V ++ GL G SK A+Q AA L+ Sbjct: 18 CMANLGVSLTFLEDQTAGPGSS--FSVCADLDGLVCPAGTGSSKLEAKQQAALSALQ 72 >gi|254675158|ref|NP_083704.1| adenosine deaminase domain-containing protein 2 [Mus musculus] gi|187952769|gb|AAI37981.1| Adad2 protein [Mus musculus] Length = 561 Score = 41.6 bits (97), Expect = 0.092, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 A GV+ + +GP F+V ++ GL G SK A+Q AA L+ Sbjct: 101 CMANLGVSLTFLEDQTAGPGSS--FSVCADLDGLVCPAGTGSSKLEAKQQAALSALQ 155 >gi|81905359|sp|Q9D5P4|ADAD2_MOUSE RecName: Full=Adenosine deaminase domain-containing protein 2 gi|12853260|dbj|BAB29697.1| unnamed protein product [Mus musculus] Length = 478 Score = 41.6 bits (97), Expect = 0.092, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 A GV+ + +GP F+V ++ GL G SK A+Q AA L+ Sbjct: 18 CMANLGVSLTFLEDQTAGPGSS--FSVCADLDGLVCPAGTGSSKLEAKQQAALSALQ 72 >gi|169218462|gb|ACA50121.1| VP12 [Banna virus] gi|169218504|gb|ACA50142.1| VP12 [Banna virus] Length = 207 Score = 41.6 bits (97), Expect = 0.093, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 D + + +A ++ ++ GP HDPRF + ++ Q D SK+ A Q Sbjct: 1 MDPVSVVHNFARSQGLPL-NFETVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 58 >gi|218461557|ref|ZP_03501648.1| ribonuclease III [Rhizobium etli Kim 5] Length = 45 Score = 41.6 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 22/39 (56%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 +SA + LE IGY F ++ L++ALTH+S + Sbjct: 7 LSAADRAKLESLIGYDFVEKARLDRALTHASARTEKGGN 45 >gi|149411995|ref|XP_001513167.1| PREDICTED: similar to LRRG00118 [Ornithorhynchus anatinus] Length = 576 Score = 41.2 bits (96), Expect = 0.097, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K ++ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 80 KKIPREFIMKFKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVLGPYFAFCAVVDGIQ 138 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ A AA L Sbjct: 139 YKTGLGQNKKEARSNAAKLALDEL 162 >gi|170037638|ref|XP_001846663.1| ribonuclease iii [Culex quinquefasciatus] gi|167880947|gb|EDS44330.1| ribonuclease iii [Culex quinquefasciatus] Length = 166 Score = 41.2 bits (96), Expect = 0.097, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 43/160 (26%), Gaps = 54/160 (33%) Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F +EG L+ ++V + + +A++L L F+ + + Sbjct: 3 FLDLEEGGLATYRAAIVQNQHLAVLAKKLYLEKFMLYAHES------------------- 43 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ++ ++ P KV + Sbjct: 44 ----------DLCHELELRHALPDI-------------------------PICKVIECNS 68 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P + + G A S + AE AA + L+ Sbjct: 69 PTSTRVYMMADYFRGKGLACSNGHSTQQAEMNAAKQALEN 108 >gi|195132199|ref|XP_002010531.1| GI14629 [Drosophila mojavensis] gi|193908981|gb|EDW07848.1| GI14629 [Drosophila mojavensis] Length = 458 Score = 41.2 bits (96), Expect = 0.098, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 12/149 (8%) Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSF-MTSIQADVVESLIAALYLDGGIEVAGTFV 139 +T Q+ L + R K+ + ++ + E L L+ +++ + Sbjct: 302 CQTLQQICEIWGLGDYCRRKQQELKEHGNGGRANVI--LTECLAKRQKLERSEDLSDEYE 359 Query: 140 DKYWKQRALKSGKFRRD---AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + A + D K L A P Y+ D F + Sbjct: 360 GVICRNMAFLRSTYPSDTQLPKMVLYVLAGKLGKQAPSYETHQC-----DKLFRSICSYD 414 Query: 197 GLAPAQG-MDCSKRAAEQVAAAEVLKREG 224 G + + +K+ AEQ AA L + G Sbjct: 415 GQRFSSSFWEKNKKQAEQGAALVALLQLG 443 >gi|261326786|emb|CBH09759.1| conserved hypothetical protein [Trypanosoma brucei gambiense DAL972] Length = 946 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 28/126 (22%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +S + LE+ + L A+T E LE+LGD +L +++ Sbjct: 792 LSEADQAKLEQSL------MEQLLLAVT--------PVKNEALEYLGDAVLDFVVAQEKL 837 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + +V A + +A+ L F ++ + + QAD+VE Sbjct: 838 NSWTGGP----------IVDATCNASLAKCL----FPQLRNYFEMKLGISNQKRQADMVE 883 Query: 121 SLIAAL 126 ++ A+ Sbjct: 884 AIFGAV 889 >gi|260821131|ref|XP_002605887.1| hypothetical protein BRAFLDRAFT_124903 [Branchiostoma floridae] gi|229291223|gb|EEN61897.1| hypothetical protein BRAFLDRAFT_124903 [Branchiostoma floridae] Length = 667 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 1/51 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + L E+ K E+ +GP H P+F I G G + Sbjct: 133 PVSALNEYCQLKRHKL-EFNEVAGTGPLHCPQFAYQATIDGRPFKPGQGRT 182 >gi|156063260|ref|XP_001597552.1| hypothetical protein SS1G_01746 [Sclerotinia sclerotiorum 1980] gi|154697082|gb|EDN96820.1| hypothetical protein SS1G_01746 [Sclerotinia sclerotiorum 1980 UF-70] Length = 259 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 28/139 (20%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN-------HFDSAKEGE------- 70 A+TH S + +RL + G RIL L S +L EG Sbjct: 112 LAVTHKSFDQGRRGFNDRLAYFGRRILSLQTSLVLLQSPIARRAQLPQDTEGMEPYSHPA 171 Query: 71 ------LSVRF-NSLVSAETCSQVARELDLASFI----RVSSDLRKDVCSFMTSIQADVV 119 L+ ++S E +++ + + I R+ +L K + A + Sbjct: 172 LDGLPNLTNVKVGDILSKERLARLGTRMGMQDIIRWEPRMKDNLEKSGIDL---VIATSL 228 Query: 120 ESLIAALYLDGGIEVAGTF 138 ++I A+ L G + A Sbjct: 229 YAIIGAVALQKGGDFATEV 247 >gi|238878349|gb|EEQ41987.1| hypothetical protein CAWG_00181 [Candida albicans WO-1] Length = 220 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 17/155 (10%) Query: 1 MSALRYSTLEKRIG--YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 ++ S ++ +G Y + + + +TH S + + E+L +G ++L L + Sbjct: 53 LNETNISHIKSFLGDKYNIPD-EIALQVITHKSFGNGIKPYNEKLAAMGSKLLSLYFAKY 111 Query: 59 LFNHFDSAKEG----EL----SVRFNSLVSAETCSQVARELDLASFI----RVSSDLRKD 106 + N G L S L S +T + A+ ++ + R S+ + Sbjct: 112 VTNQPCKHDNGVEGKNLDVLGSPMSRELPSLKTAAIFAKSNNINEIMFWHTRNSTLGFES 171 Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 S +++ SL+ A+ G + A F+ + Sbjct: 172 SGELKVS--GELLFSLVGAVNFYHGKDKAEQFITE 204 >gi|158340645|ref|YP_001521813.1| hypothetical protein AM1_D0002 [Acaryochloris marina MBIC11017] gi|158310886|gb|ABW32499.1| hypothetical protein AM1_D0002 [Acaryochloris marina MBIC11017] Length = 78 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 8/62 (12%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLK 221 TP Y + D F E+ G+ K+ A+ +AA E+L+ Sbjct: 6 CQTLRWETPVYTMVSS-----DEWFICECELSVLGQQLEGSGVAKKKKLAKSIAAREILE 60 Query: 222 RE 223 + Sbjct: 61 QL 62 >gi|183986711|ref|NP_001116945.1| adenosine deaminase domain containing 1 (testis-specific) [Xenopus (Silurana) tropicalis] gi|170284982|gb|AAI61180.1| adad1 protein [Xenopus (Silurana) tropicalis] Length = 584 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + + + K T +G F I G+ Sbjct: 80 RKVTKEFVVKYRRGDLNPVSALYQFAQMQ-RMEIDLKETVTTGNVFGAYFAFCAVIDGIE 138 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 GM +K+ A+ AA L Sbjct: 139 YKTGMGQNKKEAKANAAQLALDEL 162 >gi|73979763|ref|XP_857218.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 3 [Canis familiaris] Length = 151 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + E + G+ +Y++ G HD F + VE+ G +G + Sbjct: 49 KNPIMELNEKRRGL--KYELLSEPGGSHDKHFVMEVEVDGQK-FRGAGPN 95 >gi|242219204|ref|XP_002475384.1| predicted protein [Postia placenta Mad-698-R] gi|220725403|gb|EED79391.1| predicted protein [Postia placenta Mad-698-R] Length = 125 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 7/64 (10%) Query: 161 LQEWAHAKFGVTPEYKVTFRS---GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ-VAA 216 L W +FG + +T GP H + V+V + +G +K+ A + AA Sbjct: 53 LNNWVQGRFGRADD--LTSEELLTGPRHAATWVVIVYFRSIEYGRGT-STKKNAAKDQAA 109 Query: 217 AEVL 220 L Sbjct: 110 ERAL 113 >gi|72386585|ref|XP_843717.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62175420|gb|AAX69562.1| hypothetical protein Tb927.3.1230 [Trypanosoma brucei] gi|70800249|gb|AAZ10158.1| hypothetical protein Tb927.3.1230 [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 948 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 28/126 (22%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +S + LE+ + L A+T E LE+LGD +L +++ Sbjct: 794 LSEADQAKLEQSL------MEQLLLAVT--------PVKNEALEYLGDAVLDFVVAQEKL 839 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + +V A + +A+ L F ++ + + QAD+VE Sbjct: 840 NSWTGGP----------IVDATCNASLAKCL----FPQLRNYFEMKLGISNQKRQADMVE 885 Query: 121 SLIAAL 126 ++ A+ Sbjct: 886 AIFGAV 891 >gi|311223109|gb|ADP76633.1| nonstructural protein NSP3 [Human rotavirus C] gi|311223113|gb|ADP76635.1| nonstructural protein NSP3 [Human rotavirus C] Length = 402 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 17/25 (68%) Query: 201 AQGMDCSKRAAEQVAAAEVLKREGI 225 A G SK+ A+++AA ++L + GI Sbjct: 378 ASGSGRSKKEAKRIAAYDILDQLGI 402 >gi|223712803|gb|ACN22083.1| VP12 [Banna virus] Length = 208 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 D + + +A ++ +K GP HDPRF + ++ Q D SK+ A Q Sbjct: 2 MDPVSVVHSFARSQGLPL-NFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59 >gi|257215814|emb|CAX83059.1| maleless [Schistosoma japonicum] Length = 237 Score = 41.2 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAA 216 K+ L + K + PEY + RF G G +K+ A+ AA Sbjct: 8 KSFLYTFLQTKKRIAPEYTFIEKPVGRGKVRFLCEARAEGFNYVGIGNSTTKKDAQTNAA 67 Query: 217 AEV---LKREG 224 + L REG Sbjct: 68 RDFVNYLVREG 78 >gi|332982043|ref|YP_004463484.1| ribonuclease III [Mahella australiensis 50-1 BON] gi|332699721|gb|AEE96662.1| ribonuclease III [Mahella australiensis 50-1 BON] Length = 136 Score = 41.2 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 48/116 (41%), Gaps = 11/116 (9%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD--LA----SF 96 L ++GD + L + T + + EL+ + +LV+A+ +++ + L+ L Sbjct: 21 LAYIGDAVYELFVRTYMVTRY-DISPHELNKKTVALVNAKAQAEMLKRLEGMLNEQEIDI 79 Query: 97 IRVSSDLRKDVCSFMTSI----QADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 +R + + TS A E+LI LYL G + ++ ++ Sbjct: 80 VRRGRNTKSSNVPRHTSPIQYRYATGFEALIGYLYLKGEYDRLKYLLELCLSDDSI 135 >gi|169218484|gb|ACA50132.1| VP12 [Banna virus] Length = 208 Score = 41.2 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 D + + +A ++ +K GP HDPRF + ++ Q D SK+ A Q Sbjct: 2 MDPVSVVHSFARSQGLPL-NFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59 >gi|313225131|emb|CBY20924.1| unnamed protein product [Oikopleura dioica] Length = 2665 Score = 41.2 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%) Query: 182 GPDHDPRFTVVVEISGLAP---AQGMDCSKRAAEQVAAAEVLKR 222 GP H P FT + A+G SK+ A+ AA L++ Sbjct: 97 GPPHKPTFTFECSVKVKGSWYAAKGKSNSKQNAKHEAAK-ALRK 139 >gi|169350896|ref|ZP_02867834.1| hypothetical protein CLOSPI_01670 [Clostridium spiroforme DSM 1552] gi|169292482|gb|EDS74615.1| hypothetical protein CLOSPI_01670 [Clostridium spiroforme DSM 1552] Length = 125 Score = 41.2 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 10/109 (9%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---------DL 93 L +LGD +L +++ L + K + VSA ++ ++ ++ Sbjct: 11 LAYLGDSVLEVMVRDYLVKESELVKPNDFQKEAIKYVSASFHARFMHDMISEGFFTETEV 70 Query: 94 ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 + + + + + + + E++I LYL E D+Y Sbjct: 71 GIY-KRGRNTKGGKNESLEHMHSTGFEAIIGTLYLQKDYERLKIIFDRY 118 >gi|169218528|gb|ACA50154.1| VP12 [Banna virus] Length = 207 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 D + + +A ++ +K GP HDPRF + ++ Q D SK+ A Q Sbjct: 1 MDPVSVVHSFARSQGLPL-NFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 58 >gi|281201329|gb|EFA75541.1| hypothetical protein PPL_11046 [Polysphondylium pallidum PN500] Length = 1128 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 16/39 (41%) Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP H P F + ++ SK+ A+ + + L Sbjct: 704 GPQHQPEFICGLYLNNELKETCKGRSKKDAKDKVSRQAL 742 >gi|198429691|ref|XP_002127325.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8 [Ciona intestinalis] Length = 577 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 2/61 (3%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+A + P Y F + D F + ++ +K++A+ AA + Sbjct: 299 LHEYAQSVLRTKPHY--IFATNEDASDPFQATIVLNEKNYGTASGINKKSAKNKAALLTM 356 Query: 221 K 221 + Sbjct: 357 E 357 >gi|169218438|gb|ACA50109.1| VP12 [Banna virus] Length = 206 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 167 AKFGVTP-EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 A+ P +K GP HDPRF + ++ Q D SK+ A Q Sbjct: 10 ARSQGLPLNFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 57 >gi|312074021|ref|XP_003139783.1| hypothetical protein LOAG_04198 [Loa loa] gi|307765056|gb|EFO24290.1| hypothetical protein LOAG_04198 [Loa loa] Length = 184 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQ 213 + + L E K P++ SGP ++ RF ++G+ SK+ + Sbjct: 92 KHPVSVLMELCSKKRWHAPQFTCL-ESGPSNNRRFLWKAVVNGVEYQPSTPSTSKKTGKA 150 Query: 214 VAAAEVLKREGI 225 A VL+ G+ Sbjct: 151 QACQVVLQSLGL 162 >gi|261202336|ref|XP_002628382.1| RNase III domain-containing protein [Ajellomyces dermatitidis SLH14081] gi|239590479|gb|EEQ73060.1| RNase III domain-containing protein [Ajellomyces dermatitidis SLH14081] gi|239612205|gb|EEQ89192.1| RNase III domain-containing protein [Ajellomyces dermatitidis ER-3] gi|327353149|gb|EGE82006.1| RNase III domain-containing protein [Ajellomyces dermatitidis ATCC 18188] Length = 266 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 22/151 (14%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL---------------- 71 TH S + ERL +LG +I+ L S L + +L Sbjct: 114 THKSFDQGRRGFNERLSYLGKQIVHLQASLSLLESSSVSSPQKLEDPYGRTPFEHPSLQG 173 Query: 72 -----SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAA 125 N ++ + +A + L +R R D S + + + +++ A Sbjct: 174 LDALTEDNKNMRINRTKLAALAEQYKLGEVLRWVPRYRNDLPGSGLEVVLTQAIYAVVGA 233 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156 + L+ G VA + RD Sbjct: 234 VALEKGGAVANQVARDSILKPLGFDIGMPRD 264 >gi|242792823|ref|XP_002482035.1| RNase III domain protein [Talaromyces stipitatus ATCC 10500] gi|218718623|gb|EED18043.1| RNase III domain protein [Talaromyces stipitatus ATCC 10500] Length = 259 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 24/143 (16%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA--KEGELSVRFNSLVSAE 82 A+TH S + +RL LG RI+ L S L + ++ LS V Sbjct: 108 LAVTHKSFDQGRRGFNDRLALLGKRIVQLQASLNLVQNPENYKTNVPPLSRADKGKVFNH 167 Query: 83 ---------------------TCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVE 120 +++A + +L +R + D S + + + Sbjct: 168 PALEGLENLTLDNRGWFTHKINLAKIAEKYELLKVLRWAPVKPDDLEGSGLNVVLTHTLY 227 Query: 121 SLIAALYLDGGIEVAGTFVDKYW 143 +++ A+ L+ G A F + Sbjct: 228 AIVGAIALERGGVEANEFARQRI 250 >gi|1770456|emb|CAA66917.1| M-phase phosphoprotein 4 [Homo sapiens] Length = 440 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 18/30 (60%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + +YK+ ++GP H P FT+ VE+ G Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDG 440 >gi|268561546|ref|XP_002646471.1| Hypothetical protein CBG19440 [Caenorhabditis briggsae] gi|187024149|emb|CAP36691.1| CBR-ADR-1 protein [Caenorhabditis briggsae AF16] Length = 1012 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P F I G SK+ A+ AA LKR+ Sbjct: 608 PVFYCDCVIDEER-FTGSGRSKKLAKNAAAVVALKRK 643 >gi|291065624|gb|ADD73901.1| dsRNA binding protein [Banna virus] gi|291065634|gb|ADD73906.1| dsRNA binding protein [Banna virus] gi|291065636|gb|ADD73907.1| dsRNA binding protein [Banna virus] Length = 208 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 D + + +A ++ +K GP HDPRF + ++ Q D SK+ A Q Sbjct: 2 MDPVSVVHSFARSQGLPL-NFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59 >gi|3850251|gb|AAC72051.1| Vp12 [Banna virus] Length = 207 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 167 AKFGVTP-EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 A+ P +++ GP HDPRF + + Q D SK+ A Q Sbjct: 11 ARSQGLPLDFETVGCEGPSHDPRFVIECKFLDFQH-QCTDSSKKRAIQK 58 >gi|313221521|emb|CBY32268.1| unnamed protein product [Oikopleura dioica] Length = 733 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E+ + P Y+ D + +++I G G ++ A+ +AA E Sbjct: 466 TILHEYCNRALKAQPIYEDVRDDLISSDRQ-KYIIKIDGKEYGSGEGANRTIAKNIAALE 524 Query: 219 VLK 221 LK Sbjct: 525 TLK 527 >gi|156546224|ref|XP_001604820.1| PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] Length = 1039 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG--MDCSKRAAEQ 213 D + L + A+ P Y +D V + G + +K AE+ Sbjct: 266 DPRLRLLSYTEARKLPHPVYIDVSVK---NDKNIYSAVMVCGKKHSSYPQEAKTKDEAEK 322 Query: 214 VAAAEVL 220 +AA L Sbjct: 323 LAAKNAL 329 >gi|291065618|gb|ADD73898.1| dsRNA binding protein [Banna virus] gi|291065620|gb|ADD73899.1| dsRNA binding protein [Banna virus] gi|291065622|gb|ADD73900.1| dsRNA binding protein [Banna virus] Length = 208 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 D + + +A ++ +K GP HDPRF + ++ Q D SK+ A Q Sbjct: 2 MDPVSVVHSFARSQGLPL-NFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59 >gi|301776895|ref|XP_002923866.1| PREDICTED: adenosine deaminase domain-containing protein 1-like isoform 2 [Ailuropoda melanoleuca] Length = 566 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 80 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVHLDLKETVTTGNVMGPYFAFCAVVDGIQ 138 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162 >gi|301776893|ref|XP_002923865.1| PREDICTED: adenosine deaminase domain-containing protein 1-like isoform 1 [Ailuropoda melanoleuca] Length = 577 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 80 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVHLDLKETVTTGNVMGPYFAFCAVVDGIQ 138 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162 >gi|291065630|gb|ADD73904.1| dsRNA binding protein [Banna virus] gi|291065632|gb|ADD73905.1| dsRNA binding protein [Banna virus] Length = 208 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 167 AKFGVTP-EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 A+ P +K GP HDPRF + ++ Q D SK+ A Q Sbjct: 12 ARSQGLPLNFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59 >gi|86562256|ref|NP_495890.2| RNA HelicAse family member (rha-1) [Caenorhabditis elegans] gi|3913436|sp|Q22307|DHX9_CAEEL RecName: Full=Probable ATP-dependent RNA helicase A; AltName: Full=Nuclear DNA helicase II; Short=NDH II gi|77799164|emb|CAA90409.2| C. elegans protein T07D4.3, confirmed by transcript evidence [Caenorhabditis elegans] Length = 1301 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 5/76 (6%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAA 211 RD K L W P Y + RF + I+G A G +K+ A Sbjct: 1 MSRDVKEFLYAWLGKNKYGNPTYDTKSET-RSGRQRFKCELRITGFGYTAFGNSTNKKDA 59 Query: 212 EQVAAAEV---LKREG 224 AA + L REG Sbjct: 60 ATNAAQDFCQYLVREG 75 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 8/85 (9%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEY--KV----TFRSGPDHDPRFTVVVEISGL 198 + + G ++K L E+ Y K+ T ++ F I+ Sbjct: 160 KSEIHGGWTMENSKKALNEFLQKMRLPQVNYGTKIRESNTVKTMETTAQIFVPQ--INKN 217 Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223 +G +K+ +E A ++++ Sbjct: 218 LVGKGTGSNKKVSEAACAMNIVRQM 242 >gi|325181112|emb|CCA15525.1| double stranded RNA binding putative [Albugo laibachii Nc14] Length = 320 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + F ++L + + + ++ + + V+ +G A A G SKR Sbjct: 113 TESFDVSYVSKLNDLIQ-RQKINICFQFETKEDERGQKWYHCRVDENGQALAHGKGISKR 171 Query: 210 AAEQVAAAEVL 220 A+ +AA L Sbjct: 172 VAKALAAQSAL 182 >gi|50513704|pdb|1T4O|A Chain A, Crystal Structure Of Rnt1p Dsrbd gi|50513705|pdb|1T4O|B Chain B, Crystal Structure Of Rnt1p Dsrbd Length = 117 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 5/76 (6%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEI-SGLAPAQGMD 205 +K+ K +AK +L + Y + P DP V + G G+ Sbjct: 1 MKTDKLDMNAKRQLYSLI-GYASLRLHYVTVKK--PTAVDPNSIVECRVGDGTVLGTGVG 57 Query: 206 CSKRAAEQVAAAEVLK 221 + + A AA L+ Sbjct: 58 RNIKIAGIRAAENALR 73 >gi|302671186|ref|YP_003831146.1| ribonuclease III family protein [Butyrivibrio proteoclasticus B316] gi|302395659|gb|ADL34564.1| ribonuclease III family protein [Butyrivibrio proteoclasticus B316] Length = 145 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 11/117 (9%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL------DLASF 96 L ++GD ++I ++L N ++A L R +S+V A T + + + L + + Sbjct: 28 LAYIGDAFFDMIIRSILVNKGNTA-VNNLHKRASSVVKAPTQAAMVKALMEDLTEEEQDY 86 Query: 97 IRVSSDLRKD----VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 R + + + M + A E+++ LYL GGI+ A V+ + L Sbjct: 87 YRRGRNSKPHTKAKNATTMDYLDATGFEAVMGFLYLTGGIDRACELVNLGINKLELD 143 >gi|291065614|gb|ADD73896.1| dsRNA binding protein [Banna virus] Length = 208 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 167 AKFGVTP-EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 A+ P +K GP HDPRF + ++ Q D SK+ A Q Sbjct: 12 ARSQGLPLNFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59 >gi|159121927|gb|EDP47059.1| hypothetical protein AFUB_102760 [Aspergillus fumigatus A1163] Length = 603 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 9/63 (14%) Query: 1 MSALRYSTL-EKRIGYAFANRSLLEKALTHSSISHSYQES------YERLEFLGDRILGL 53 M+ + + + R+GY F N ++L ALT + E RL LG+ ++ Sbjct: 1 MATTKDARFVQDRLGYRFKNEAILRLALT--AAGKGGAEDGANKRGNSRLAHLGNFLMQF 58 Query: 54 LIS 56 L++ Sbjct: 59 LLA 61 >gi|291065602|gb|ADD73890.1| dsRNA binding protein [Banna virus] gi|291065608|gb|ADD73893.1| dsRNA binding protein [Banna virus] gi|291065610|gb|ADD73894.1| dsRNA binding protein [Banna virus] gi|291065612|gb|ADD73895.1| dsRNA binding protein [Banna virus] gi|291065616|gb|ADD73897.1| dsRNA binding protein [Banna virus] Length = 208 Score = 40.8 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 167 AKFGVTP-EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 A+ P +K GP HDPRF + ++ Q D SK+ A Q Sbjct: 12 ARSQGLPLNFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59 >gi|81022920|ref|YP_392486.1| nonstructural protein 3 [Rotavirus C] gi|81975426|sp|Q9PY95|NSP3_ROTHC RecName: Full=Non-structural protein 3; Short=NSP3; Contains: RecName: Full=p38; Contains: RecName: Full=p8 gi|5734508|emb|CAB52751.1| nonstructural protein 3 [Human rotavirus (group C / strain Bristol)] Length = 402 Score = 40.8 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 17/25 (68%) Query: 201 AQGMDCSKRAAEQVAAAEVLKREGI 225 A G SK+ A+++AA ++L + GI Sbjct: 378 AIGSGRSKKEAKRIAAYDILDQLGI 402 >gi|328769023|gb|EGF79068.1| hypothetical protein BATDEDRAFT_90050 [Batrachochytrium dendrobatidis JAM81] Length = 665 Score = 40.8 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 23/152 (15%) Query: 96 FIRVSSDLRKDVCSFMTSI-QADVVESLIAALYLD----------GGIEVAGTFVD-KYW 143 +I + F S+ E++I A + G E+AG VD Sbjct: 205 YILMGPKPVYQEIEFKKSLKLKKPEEAVIEASREEVTWGFAEDAYDGDELAGQEVDMSAV 264 Query: 144 KQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-----G 197 + + F D + L+ W ++ EY+ G + +E+ G Sbjct: 265 DRSTIDPNAFYYSDPRKALRVWFDSRGADL-EYQ-HEEEGHGVTRGYVARIELPVETGFG 322 Query: 198 LAPAQGMDCSKRAAEQVAAAEV---LKREGIW 226 G KR+AE AA E L + G+ Sbjct: 323 KLIGVGHGSKKRSAEHDAALEACFRLDKYGLL 354 >gi|188593362|emb|CAO78750.1| Oikopleura double-stranded RNA-binding protein dgcr8 [Oikopleura dioica] Length = 768 Score = 40.8 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E+ + P Y+ D + +++I G G ++ A+ +AA E Sbjct: 501 TILHEYCNRALKAQPIYEDVRDDLVSSDRQ-KYIIKIDGKEYGSGEGANRTIAKNIAALE 559 Query: 219 VLK 221 LK Sbjct: 560 TLK 562 >gi|118783761|ref|XP_001230901.1| AGAP004281-PA [Anopheles gambiae str. PEST] gi|116129024|gb|EAU76990.1| AGAP004281-PA [Anopheles gambiae str. PEST] Length = 344 Score = 40.8 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE-GI 225 F V + G G SK+ A ++AA+E K G+ Sbjct: 301 FVARVTV-GEQSFTGTGQSKKVARKMAASEACKALFGV 337 >gi|320527639|ref|ZP_08028813.1| RNase3 domain protein [Solobacterium moorei F0204] gi|320131960|gb|EFW24516.1| RNase3 domain protein [Solobacterium moorei F0204] Length = 124 Score = 40.8 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 40/118 (33%), Gaps = 14/118 (11%) Query: 38 ESYER-LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 E R L FLGD + L + L K L S VSA++ ++ L SF Sbjct: 5 ECNGRTLAFLGDAVWSLAVRDFLVQEG-QGKGKMLQKLSISYVSAKSQARFYSLLHEESF 63 Query: 97 IRVSSDLRKDVCSF------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 + +T + E+++ ALYL+ E DK Sbjct: 64 FTEEEEATYRRGRNGNTGSVPNNTDVVTYRMSTGFEAILGALYLENNQERIRQIWDKV 121 >gi|20197904|gb|AAM15307.1| putative RNA helicase A [Arabidopsis thaliana] Length = 640 Score = 40.8 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 10/76 (13%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD--- 205 +SG ++K++LQ P YK + +F VE + M Sbjct: 544 ESGPGGDNSKSQLQTILTRAGYTVPMYKTKQLK----NNKFQTTVEFNETQI---MGQPC 596 Query: 206 CSKRAAEQVAAAEVLK 221 +K++AE+ AAAE ++ Sbjct: 597 SNKKSAEKDAAAEAIQ 612 >gi|111226989|ref|XP_001134628.1| hypothetical protein DDB_G0294407 [Dictyostelium discoideum AX4] gi|90971302|gb|EAS66962.1| hypothetical protein DDB_G0294407 [Dictyostelium discoideum AX4] Length = 837 Score = 40.8 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 9/72 (12%) Query: 158 KTELQEWAHAKF-GVTPEYKVTFRSGPDHDPRFTVVVEI-------SGLAPAQGMDCSKR 209 K +LQ + K G P Y + GPDH+ + + + + +K+ Sbjct: 3 KNDLQTYIQQKRIGYLPVYH-SECRGPDHEREYRTHIRVGEINSKHNNKIVYSDWYKNKK 61 Query: 210 AAEQVAAAEVLK 221 AE A +VL Sbjct: 62 TAESCCAIKVLN 73 >gi|255954591|ref|XP_002568048.1| Pc21g10130 [Penicillium chrysogenum Wisconsin 54-1255] gi|211589759|emb|CAP95910.1| Pc21g10130 [Penicillium chrysogenum Wisconsin 54-1255] Length = 208 Score = 40.8 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 42/120 (35%), Gaps = 17/120 (14%) Query: 29 HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88 HSS + + + L L+S L+ RF + Sbjct: 47 HSSFTQRHLINTSIL-----SQFRNLLSRTTEMEDLDIDSFVLTRRF-TPRKWTAL---- 96 Query: 89 RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 IR +L + T + ADVVESLI A Y+DGGI A + + + L Sbjct: 97 -------LIRNKLELSTAKRNISTKVLADVVESLIGAAYVDGGIREAQACLHRILPEINL 149 >gi|291301908|ref|YP_003513186.1| ribonuclease II [Stackebrandtia nassauensis DSM 44728] gi|290571128|gb|ADD44093.1| ribonuclease II [Stackebrandtia nassauensis DSM 44728] Length = 617 Score = 40.8 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 10/85 (11%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--EYKVTFRSGPDHDPRFTVVVEISGL--- 198 + + R+ L E+A +Y GP H P FT V +G Sbjct: 523 RPSTREPVPADRNPVMALNEYAQTGVITELAWDY---DSDGPPHQPTFTCTVTATGDTGE 579 Query: 199 -APAQGMDCSKRAAEQVAAAEVLKR 222 A G K+AA+ AAA L++ Sbjct: 580 PLSATGTGAGKQAAKTSAAAR-LRK 603 >gi|47202595|emb|CAF88058.1| unnamed protein product [Tetraodon nigroviridis] Length = 254 Score = 40.8 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K + E + G+ +Y++ SG +D RF + VE+ +G Sbjct: 15 KNPVMELNEKRRGL--KYELISESGSSYDKRFIIEVEVD-KQVFRGTGP 60 >gi|293355281|ref|XP_002728655.1| PREDICTED: adenosine deaminase domain containing 2 [Rattus norvegicus] Length = 528 Score = 40.8 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 17/33 (51%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F+V E+ GL G SK A+Q AA L+ Sbjct: 123 FSVCAELDGLVCPAGTGSSKLEAKQQAALSALQ 155 >gi|149038317|gb|EDL92677.1| rCG51254 [Rattus norvegicus] Length = 194 Score = 40.8 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 17/33 (51%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F+V E+ GL G SK A+Q AA L+ Sbjct: 123 FSVCAELDGLVCPAGTGSSKLEAKQQAALSALQ 155 >gi|293343395|ref|XP_002725441.1| PREDICTED: similar to testis nuclear RNA-binding protein [Rattus norvegicus] Length = 301 Score = 40.8 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 17/33 (51%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F+V E+ GL G SK A+Q AA L+ Sbjct: 123 FSVCAELDGLVCPAGTGSSKLEAKQQAALSALQ 155 >gi|79548544|ref|NP_178223.2| ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding [Arabidopsis thaliana] gi|330250311|gb|AEC05405.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana] Length = 1113 Score = 40.8 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 10/76 (13%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD--- 205 +SG ++K++LQ P YK + +F VE + M Sbjct: 1017 ESGPGGDNSKSQLQTILTRAGYTVPMYKTKQLK----NNKFQTTVEFNETQI---MGQPC 1069 Query: 206 CSKRAAEQVAAAEVLK 221 +K++AE+ AAAE ++ Sbjct: 1070 SNKKSAEKDAAAEAIQ 1085 >gi|291065600|gb|ADD73889.1| dsRNA binding protein [Banna virus] gi|291065604|gb|ADD73891.1| dsRNA binding protein [Banna virus] gi|291065606|gb|ADD73892.1| dsRNA binding protein [Banna virus] Length = 208 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 D + + +A ++ +K GP HDPRF + ++ Q D SK+ A Q Sbjct: 2 MDPVSVVHSFARSQGLPL-NFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59 >gi|332244469|ref|XP_003271396.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform 3 [Nomascus leucogenys] Length = 565 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 80 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162 >gi|291401839|ref|XP_002717282.1| PREDICTED: adenosine deaminase domain containing 1 (testis-specific) [Oryctolagus cuniculus] Length = 565 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 80 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162 >gi|126330710|ref|XP_001370522.1| PREDICTED: similar to testis nuclear RNA binding protein [Monodelphis domestica] Length = 660 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 163 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 221 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 222 YKTGLGQNKKESRSNAAKLALDEL 245 >gi|109075564|ref|XP_001103054.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform 2 [Macaca mulatta] Length = 565 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 80 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162 >gi|297484624|ref|XP_002694442.1| PREDICTED: adenosine deaminase domain containing 1 (testis-specific) isoform 2 [Bos taurus] gi|296478716|gb|DAA20831.1| adenosine deaminase domain containing 1 (testis-specific) isoform 2 [Bos taurus] Length = 566 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 80 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162 >gi|297484622|ref|XP_002694441.1| PREDICTED: adenosine deaminase domain containing 1 (testis-specific) isoform 1 [Bos taurus] gi|296478715|gb|DAA20830.1| adenosine deaminase domain containing 1 (testis-specific) isoform 1 [Bos taurus] Length = 577 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 80 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162 >gi|74354638|gb|AAI02559.1| Adenosine deaminase domain containing 1 (testis-specific) [Bos taurus] Length = 208 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 80 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162 >gi|332244465|ref|XP_003271394.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform 1 [Nomascus leucogenys] Length = 576 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 80 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162 >gi|322801001|gb|EFZ21782.1| hypothetical protein SINV_04122 [Solenopsis invicta] Length = 184 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 181 SGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 +GP H RF + I G G +K+ A+ AA + Sbjct: 9 TGPKHRQRFLCELRIPGFDYVGAGNSTNKKDAQGNAAKD 47 >gi|332246796|ref|XP_003272538.1| PREDICTED: adenosine deaminase domain-containing protein 2 isoform 3 [Nomascus leucogenys] Length = 671 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V VE+ G+ G SK A+Q AA L Sbjct: 223 FSVSVELDGVVCPAGTANSKTEAKQQAALSAL 254 >gi|332246792|ref|XP_003272536.1| PREDICTED: adenosine deaminase domain-containing protein 2 isoform 1 [Nomascus leucogenys] Length = 580 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V VE+ G+ G SK A+Q AA L Sbjct: 142 FSVSVELDGVVCPAGTANSKTEAKQQAALSAL 173 >gi|332244467|ref|XP_003271395.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform 2 [Nomascus leucogenys] Length = 558 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 62 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 120 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 121 YKTGLGQNKKESRSNAAKLALDEL 144 >gi|114663874|ref|XP_001151022.1| PREDICTED: adenosine deaminase domain-containing protein 2 isoform 2 [Pan troglodytes] Length = 583 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V VE+ G+ G SK A+Q AA L Sbjct: 145 FSVSVELDGVVCPAGTANSKTEAKQQAALSAL 176 >gi|114663876|ref|XP_511140.2| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes] Length = 567 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V VE+ G+ G SK A+Q AA L Sbjct: 145 FSVSVELDGVVCPAGTANSKTEAKQQAALSAL 176 >gi|222636484|gb|EEE66616.1| hypothetical protein OsJ_23196 [Oryza sativa Japonica Group] gi|305682532|dbj|BAJ16352.1| small RNA methyltransferase [Oryza sativa Japonica Group] Length = 938 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 188 RFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225 + ++I GL G K+ AEQ AA L + GI Sbjct: 48 VYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGI 86 >gi|218199137|gb|EEC81564.1| hypothetical protein OsI_25006 [Oryza sativa Indica Group] Length = 938 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 188 RFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225 + ++I GL G K+ AEQ AA L + GI Sbjct: 48 VYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGI 86 >gi|115470715|ref|NP_001058956.1| Os07g0164000 [Oryza sativa Japonica Group] gi|113610492|dbj|BAF20870.1| Os07g0164000 [Oryza sativa Japonica Group] gi|215767104|dbj|BAG99332.1| unnamed protein product [Oryza sativa Japonica Group] Length = 926 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 188 RFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225 + ++I GL G K+ AEQ AA L + GI Sbjct: 62 VYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGI 100 >gi|50510095|dbj|BAD30766.1| putative HEN1 [Oryza sativa Japonica Group] Length = 929 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 188 RFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225 + ++I GL G K+ AEQ AA L + GI Sbjct: 48 VYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGI 86 >gi|313232439|emb|CBY24107.1| unnamed protein product [Oikopleura dioica] Length = 564 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 T L E+ + P Y+ D + +++I G G ++ A+ +AA E Sbjct: 297 TILHEYCNRALKAQPIYEDVRDDLVSSDRQ-KYIIKIDGKEYGSGEGANRTIAKNIAALE 355 Query: 219 VLK 221 LK Sbjct: 356 TLK 358 >gi|46205475|ref|ZP_00209888.1| hypothetical protein Magn03001534 [Magnetospirillum magnetotacticum MS-1] Length = 52 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 14/26 (53%), Positives = 17/26 (65%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS 31 LE RIG+ FA+ +LL ALTH S Sbjct: 24 LEVLEARIGHVFADPTLLPLALTHVS 49 >gi|297817698|ref|XP_002876732.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata] gi|297322570|gb|EFH52991.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata] Length = 1120 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 10/76 (13%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD--- 205 +SG ++K++LQ P YK + +F VE + M Sbjct: 1024 ESGPGGDNSKSQLQTILTRAGYAAPMYKTKQLK----NNKFQTTVEFNETQI---MGQPC 1076 Query: 206 CSKRAAEQVAAAEVLK 221 +K+ AE+ AAAE ++ Sbjct: 1077 SNKKGAEKDAAAEAIQ 1092 >gi|225714066|gb|ACO12879.1| 39S ribosomal protein L44, mitochondrial precursor [Lepeophtheirus salmonis] Length = 328 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 12/196 (6%) Query: 34 HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 + SY RL LG ++ ++ L F + L+S + A + L Sbjct: 115 KDSEASYTRLVELGREVISASLNDFLTKTFPKVPSDGIIAFQEYLMSPYVLASKALHIGL 174 Query: 94 ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-----GIEVAGTFVDKYWKQRAL 148 + VS + + ++ +LI A G ++ V L Sbjct: 175 KD-LVVSQEYPPS-----KNTLSNAFCALIGAHSESGNNRRQSYQLVVDLVATQIIGMDL 228 Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCS 207 ++ L + PE ++ + SG + + V + + + S Sbjct: 229 HDVWKIQNPMDYLSKILAENNMKEPEPRLQWASGKNTLLASYHVGIYSNQSLIGECTGES 288 Query: 208 KRAAEQVAAAEVLKRE 223 A +AA + L+R Sbjct: 289 IETARDMAALDTLRRM 304 >gi|23238116|ref|NP_694456.1| vp12 [Banna virus] gi|81981220|sp|Q9YIT9|NS5_BAVJK RecName: Full=Non-structural protein 5; Short=NS5 gi|3850201|gb|AAC72011.1| vp12 [Banna virus strain JKT-6423] gi|3850219|gb|AAC72035.1| Vp12 [Banna virus] Length = 207 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 D + + +A ++ ++ GP HDPRF + + Q D SK+ A Q Sbjct: 1 MDPVSVVHSFARSQGLPL-NFETVGCEGPSHDPRFVIECKFLDFQH-QCTDSSKKRAIQK 58 >gi|311223107|gb|ADP76632.1| nonstructural protein NSP3 [Human rotavirus C] Length = 402 Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 17/25 (68%) Query: 201 AQGMDCSKRAAEQVAAAEVLKREGI 225 A G SK+ A+++AA ++L + G+ Sbjct: 378 AIGSGKSKKEAKRIAAYDILDQLGV 402 >gi|295666818|ref|XP_002793959.1| RNase III domain-containing protein [Paracoccidioides brasiliensis Pb01] gi|226277612|gb|EEH33178.1| RNase III domain-containing protein [Paracoccidioides brasiliensis Pb01] Length = 199 Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 22/133 (16%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL---------------- 71 TH S + ERL +LG +I+ L S L ++ +L Sbjct: 51 THKSFDQGRRGFNERLSYLGKQIVQLQASLSLLESASTSSPKQLEDPYGRAPFDHPSLQG 110 Query: 72 -----SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAA 125 N ++ +Q+A + L +R R D V S + + + +++ A Sbjct: 111 LEVLTQDHKNMKLNRTKIAQLAHQYKLEEVLRWVPRYRNDLVESGLEVVLTQAIYAVVGA 170 Query: 126 LYLDGGIEVAGTF 138 + L+ G VA Sbjct: 171 VALEKGGAVANKV 183 >gi|114595925|ref|XP_001154908.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform 1 [Pan troglodytes] gi|114595927|ref|XP_517424.2| PREDICTED: testis nuclear RNA-binding protein isoform 4 [Pan troglodytes] Length = 565 Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 80 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162 >gi|226529650|ref|NP_001152757.1| adenosine deaminase domain-containing protein 1 isoform 2 [Homo sapiens] gi|25955608|gb|AAH40229.1| ADAD1 protein [Homo sapiens] gi|119625639|gb|EAX05234.1| testis nuclear RNA-binding protein, isoform CRA_d [Homo sapiens] gi|123993053|gb|ABM84128.1| testis nuclear RNA-binding protein [synthetic construct] gi|123993055|gb|ABM84129.1| testis nuclear RNA-binding protein [synthetic construct] gi|124000041|gb|ABM87529.1| testis nuclear RNA-binding protein [synthetic construct] gi|124000043|gb|ABM87530.1| testis nuclear RNA-binding protein [synthetic construct] Length = 565 Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 80 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162 >gi|302896114|ref|XP_003046937.1| hypothetical protein NECHADRAFT_46356 [Nectria haematococca mpVI 77-13-4] gi|256727865|gb|EEU41224.1| hypothetical protein NECHADRAFT_46356 [Nectria haematococca mpVI 77-13-4] Length = 196 Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 21/148 (14%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD----------SAKEGE 70 L A+TH S + +RL LG L + + + E Sbjct: 46 ELKWLAVTHKSFDQGRRGFNDRLALLGRMTLIMETTKSIVAKDPIPGSIVPDEFERTPFE 105 Query: 71 LSVRFNS----------LVSAETCSQVARELDLASFIRVSSDL-RKDVCSFMTSIQADVV 119 + + + +A + L +R L RK S + + V Sbjct: 106 HPQLQSLDNLTMEGPRDVAGKDKLYHLAAHVGLIDVVRWKPRLVRKLKASGLEVVLNGAV 165 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA 147 ++I A+ L G VA V + R Sbjct: 166 MAIIGAITLQHGAVVASQVVRERILARL 193 >gi|83771830|dbj|BAE61960.1| unnamed protein product [Aspergillus oryzae] Length = 129 Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKAL-THSSIS---HSYQESYERLEFLGDRILGLLISTLLF 60 R +E+ I Y F N + + +AL T S++ + ++ L LGD L L+++ + Sbjct: 25 RIQLIEQIINYTFTNPATIHEALRTPGSMAILTPHRLDGHKDLAQLGDAALRLVLAKDGY 84 Query: 61 NHFDSAKEGELSVRFNS 77 + G L+ +S Sbjct: 85 QAHATRARGPLARSSSS 101 >gi|109075566|ref|XP_001102972.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform 1 [Macaca mulatta] Length = 558 Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 62 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 120 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 121 YKTGLGQNKKESRSNAAKLALDEL 144 >gi|60476168|gb|AAX21225.1| nonstructural protein 3 [Human rotavirus C] Length = 402 Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 17/25 (68%) Query: 201 AQGMDCSKRAAEQVAAAEVLKREGI 225 A G SK+ A+++AA ++L + GI Sbjct: 378 AIGSGKSKKEAKRIAAYDILDQLGI 402 >gi|158339747|ref|YP_001520754.1| exoribonuclease II, putative [Acaryochloris marina MBIC11017] gi|158309988|gb|ABW31604.1| exoribonuclease II, putative [Acaryochloris marina MBIC11017] Length = 767 Score = 40.4 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 8/62 (12%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLK 221 TP Y + D F E+ G+ K+ A+ +AA E+L+ Sbjct: 695 CQTLRWETPVYTMDSS-----DEWFICECELSVLGQQLEGSGVAKKKKLAKSIAAREILE 749 Query: 222 RE 223 + Sbjct: 750 QL 751 >gi|297293318|ref|XP_001103214.2| PREDICTED: adenosine deaminase domain-containing protein 1 isoform 4 [Macaca mulatta] Length = 613 Score = 40.4 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 117 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 175 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 176 YKTGLGQNKKESRSNAAKLALDEL 199 >gi|114595923|ref|XP_001155068.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform 3 [Pan troglodytes] Length = 576 Score = 40.4 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 80 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162 >gi|21245124|ref|NP_640336.1| adenosine deaminase domain-containing protein 1 isoform 1 [Homo sapiens] gi|74732329|sp|Q96M93|ADAD1_HUMAN RecName: Full=Adenosine deaminase domain-containing protein 1; AltName: Full=Testis nuclear RNA-binding protein gi|16552939|dbj|BAB71416.1| unnamed protein product [Homo sapiens] gi|119625633|gb|EAX05228.1| testis nuclear RNA-binding protein, isoform CRA_a [Homo sapiens] gi|119625635|gb|EAX05230.1| testis nuclear RNA-binding protein, isoform CRA_a [Homo sapiens] gi|119625636|gb|EAX05231.1| testis nuclear RNA-binding protein, isoform CRA_a [Homo sapiens] gi|119625637|gb|EAX05232.1| testis nuclear RNA-binding protein, isoform CRA_a [Homo sapiens] Length = 576 Score = 40.4 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 80 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162 >gi|68490780|ref|XP_710785.1| likely mitochondrial ribosomal protein L15 [Candida albicans SC5314] gi|68490807|ref|XP_710772.1| likely mitochondrial ribosomal protein L15 [Candida albicans SC5314] gi|46432015|gb|EAK91524.1| likely mitochondrial ribosomal protein L15 [Candida albicans SC5314] gi|46432029|gb|EAK91537.1| likely mitochondrial ribosomal protein L15 [Candida albicans SC5314] Length = 220 Score = 40.4 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 18/171 (10%) Query: 1 MSALRYSTLEKRIG--YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 ++ S ++ +G Y + + + +TH S + + E+L +G ++L L + Sbjct: 53 LNETNISHIKSFLGDKYNIPD-EIALQVITHKSFGNGIKPYNEKLAAMGSKLLSLYFAKY 111 Query: 59 LFNHFDSAKEG----EL----SVRFNSLVSAETCSQVARELDLASFI----RVSSDLRKD 106 + N G L S L S +T + A+ ++ + R S+ + Sbjct: 112 VTNQPCKHDNGVEGKNLDVLGSPMSRELPSLKTAAIFAKSNNINEIMFWHTRNSTLGFES 171 Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFV-DKYWKQRALKSGKFRRD 156 S +++ SL+ A+ G A F+ +K Q S + R+ Sbjct: 172 SGELKVS--GELLFSLVGAVNFYHGKNKAEQFITEKLVDQFEKISAQNIRN 220 >gi|68489074|ref|XP_711650.1| likely mitochondrial ribosomal protein L15 [Candida albicans SC5314] gi|68489213|ref|XP_711581.1| likely mitochondrial ribosomal protein L15 [Candida albicans SC5314] gi|46432894|gb|EAK92357.1| likely mitochondrial ribosomal protein L15 [Candida albicans SC5314] gi|46432968|gb|EAK92428.1| likely mitochondrial ribosomal protein L15 [Candida albicans SC5314] Length = 220 Score = 40.4 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 17/155 (10%) Query: 1 MSALRYSTLEKRIG--YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 ++ S ++ +G Y + + + +TH S + + E+L +G ++L L + Sbjct: 53 LNETNISHIKSFLGDKYNIPD-EIALQVITHKSFGNGIKPYNEKLAAMGSKLLSLYFAKY 111 Query: 59 LFNHFDSAKEG----EL----SVRFNSLVSAETCSQVARELDLASFI----RVSSDLRKD 106 + N G L S L S +T + A+ ++ + R S+ + Sbjct: 112 VTNQPCKHDNGVEGKNLDVLGSPMSRELPSLKTAAIFAKSNNINEIMFWHTRNSTLGFES 171 Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 S +++ SL+ A+ G A F+ + Sbjct: 172 SGELKVS--GELLFSLVGAVNFYHGKNKAEQFITE 204 >gi|327274104|ref|XP_003221818.1| PREDICTED: adenosine deaminase domain-containing protein 1-like [Anolis carolinensis] Length = 576 Score = 40.4 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V E K T +G F + G+ Sbjct: 74 KKIPKEFIIKYKRGEINPVSALHQFAQMQ-RVQLELKETVATGNLMGAYFAFCAVVDGIT 132 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ ++ AA L Sbjct: 133 YKTGLGQNKKESKSNAAKLALDEL 156 >gi|170085983|ref|XP_001874215.1| predicted protein [Laccaria bicolor S238N-H82] gi|164651767|gb|EDR16007.1| predicted protein [Laccaria bicolor S238N-H82] Length = 199 Score = 40.4 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 3/58 (5%) Query: 166 HAKF-GVTPEYKVTFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221 F G P Y+ SGP H+P + + + G +K+ A+ AA ++ Sbjct: 13 QRHFRGAVPRYE-YQESGPQHEPYWQCSIYDSQDVLIGVGGGKNKKLAKDAAADSAIR 69 >gi|303282409|ref|XP_003060496.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457967|gb|EEH55265.1| predicted protein [Micromonas pusilla CCMP1545] Length = 661 Score = 40.4 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 5/44 (11%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL-----KREGIW 226 +F V I G + A+ +K++A + A + L ++EG W Sbjct: 529 QFVADVRIHGRSLARARGKTKKSAIRAATSRALDVVRAEKEGKW 572 >gi|21752129|dbj|BAC04125.1| unnamed protein product [Homo sapiens] Length = 558 Score = 40.4 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 62 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 120 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 121 YKTGLGQNKKESRSNAAKLALDEL 144 >gi|242073788|ref|XP_002446830.1| hypothetical protein SORBIDRAFT_06g023330 [Sorghum bicolor] gi|241938013|gb|EES11158.1| hypothetical protein SORBIDRAFT_06g023330 [Sorghum bicolor] Length = 879 Score = 40.4 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 18/36 (50%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F+ V I G +G+ +++ A+ AA L+ Sbjct: 718 QFSTEVLIFGEKVGEGVGKTRKEAQWQAADTSLRNL 753 >gi|322824408|gb|EFZ29824.1| hypothetical protein TCSYLVIO_3904 [Trypanosoma cruzi] Length = 485 Score = 40.4 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 11/95 (11%) Query: 40 YERLEFLGDRILGLLISTLLFNHFDSAKEGELS------VRFNSLVSAETCSQVARELDL 93 ++R+E +GD G + L F L+ L S + V L L Sbjct: 210 FQRMECIGDHNWGHSVCHRLVVLFPEVNWRTLTNTSVVDALRTVLESNQHLDYVFTALRL 269 Query: 94 ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 +R T ++ADV+E++ L++ Sbjct: 270 DEILR-----NCGTQKISTKLKADVIEAIAGELHV 299 >gi|317495867|ref|ZP_07954230.1| RNase3 domain-containing protein [Gemella moribillum M424] gi|316914044|gb|EFV35527.1| RNase3 domain-containing protein [Gemella moribillum M424] Length = 143 Score = 40.4 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 16/135 (11%) Query: 27 LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86 T + S Q L ++GD I ++ + + K +L ++LVSA + Sbjct: 9 FTKKNFSSPEQMQALALAYIGDSIYDIMSREYVMKNHLG-KINDLHRTVSTLVSARAQAS 67 Query: 87 VAREL-------DLASFIRV-SSDLRKDVCSFMTSI----QADVVESLIAALYLDGGIEV 134 + + D+ I + + + + + SI A +E++ LYL+ E Sbjct: 68 FMKHILENNILTDIEESIYIRGKNQKNNSKAKNASIMEYKLATGLEAVFGYLYLEKNFER 127 Query: 135 AG---TFVDKYWKQR 146 ++ ++++ Sbjct: 128 LEEMFNYIINLYEEK 142 >gi|226530771|ref|NP_001152767.1| adenosine deaminase domain-containing protein 1 isoform 3 [Homo sapiens] gi|119625634|gb|EAX05229.1| testis nuclear RNA-binding protein, isoform CRA_b [Homo sapiens] Length = 558 Score = 40.4 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 62 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 120 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 121 YKTGLGQNKKESRSNAAKLALDEL 144 >gi|114595929|ref|XP_001155017.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform 2 [Pan troglodytes] Length = 558 Score = 40.4 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 62 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 120 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 121 YKTGLGQNKKESRSNAAKLALDEL 144 >gi|71415515|ref|XP_809822.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70874261|gb|EAN87971.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 485 Score = 40.4 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 11/95 (11%) Query: 40 YERLEFLGDRILGLLISTLLFNHFDSAKEGELS------VRFNSLVSAETCSQVARELDL 93 ++R+E +GD G + L F L+ L S + V L L Sbjct: 210 FQRMECIGDHNWGHSVCHRLVVLFPEVNWRTLTNTSVVDALRTVLESNQHLDYVFTALRL 269 Query: 94 ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 +R T ++ADV+E++ L++ Sbjct: 270 DEILR-----NCGTQKISTKLKADVIEAIAGELHV 299 >gi|71412938|ref|XP_808630.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70872876|gb|EAN86779.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 485 Score = 40.4 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 11/95 (11%) Query: 40 YERLEFLGDRILGLLISTLLFNHFDSAKEGELS------VRFNSLVSAETCSQVARELDL 93 ++R+E +GD G + L F L+ L S + V L L Sbjct: 210 FQRMECIGDHNWGHSVCHRLVVLFPEVNWRTLTNTSVVDALRTVLESNQHLDYVFTALRL 269 Query: 94 ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 +R T ++ADV+E++ L++ Sbjct: 270 DEILR-----NCGTQKISTKLKADVIEAIAGELHV 299 >gi|242792827|ref|XP_002482036.1| RNase III domain protein [Talaromyces stipitatus ATCC 10500] gi|218718624|gb|EED18044.1| RNase III domain protein [Talaromyces stipitatus ATCC 10500] Length = 200 Score = 40.1 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 24/143 (16%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA--KEGELSVRFNSLVSAE 82 A+TH S + +RL LG RI+ L S L + ++ LS V Sbjct: 49 LAVTHKSFDQGRRGFNDRLALLGKRIVQLQASLNLVQNPENYKTNVPPLSRADKGKVFNH 108 Query: 83 ---------------------TCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVE 120 +++A + +L +R + D S + + + Sbjct: 109 PALEGLENLTLDNRGWFTHKINLAKIAEKYELLKVLRWAPVKPDDLEGSGLNVVLTHTLY 168 Query: 121 SLIAALYLDGGIEVAGTFVDKYW 143 +++ A+ L+ G A F + Sbjct: 169 AIVGAIALERGGVEANEFARQRI 191 >gi|311223111|gb|ADP76634.1| nonstructural protein NSP3 [Human rotavirus C] gi|311223115|gb|ADP76636.1| nonstructural protein NSP3 [Human rotavirus C] Length = 402 Score = 40.1 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 17/25 (68%) Query: 201 AQGMDCSKRAAEQVAAAEVLKREGI 225 A G SK+ A+++AA ++L + GI Sbjct: 378 ANGSGRSKKEAKRIAAYDILDQLGI 402 >gi|149699899|ref|XP_001499859.1| PREDICTED: adenosine deaminase domain containing 2 [Equus caballus] Length = 619 Score = 40.1 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F+V E+ G+ G SK A+Q AA L+ Sbjct: 181 FSVCAEVDGVVCPAGTANSKLEAKQQAARSALR 213 >gi|157134083|ref|XP_001663138.1| hypothetical protein AaeL_AAEL012964 [Aedes aegypti] gi|108870604|gb|EAT34829.1| conserved hypothetical protein [Aedes aegypti] Length = 360 Score = 40.1 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F+V V + G G SK+ A + AA ++ Sbjct: 313 REFSVGVTVDGQR-FIGKARSKKLARKEAAVAACRQL 348 >gi|159163044|pdb|1T4L|B Chain B, Solution Structure Of Double-Stranded Rna Binding Domain Of S. Cerevisiae Rnase Iii (Rnt1p) In Complex With The 5' Terminal Rna Hairpin Of Snr47 Precursor Length = 90 Score = 40.1 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%) Query: 186 DPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221 DP V + G G+ + + A AA L+ Sbjct: 34 DPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 70 >gi|26450779|dbj|BAC42498.1| putative ATP-dependent RNA helicase A [Arabidopsis thaliana] Length = 435 Score = 40.1 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 10/76 (13%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD--- 205 +SG ++K++LQ P YK + +F VE + M Sbjct: 339 ESGPGGDNSKSQLQTILTRAGYTVPMYKTKQLK----NNKFQTTVEFNETQI---MGQPC 391 Query: 206 CSKRAAEQVAAAEVLK 221 +K++AE+ AAAE ++ Sbjct: 392 SNKKSAEKDAAAEAIQ 407 >gi|328875686|gb|EGG24050.1| hypothetical protein DFA_06188 [Dictyostelium fasciculatum] Length = 636 Score = 40.1 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 20/64 (31%), Gaps = 20/64 (31%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 AK LQE+ P Y T G DH +F +E+ AA Sbjct: 7 AKNNLQEYCQKNKIAMPIYNTT-TKGLDHVKQFM-------------------DSEKHAA 46 Query: 217 AEVL 220 L Sbjct: 47 TIAL 50 >gi|126179654|ref|YP_001047619.1| ribonuclease III [Methanoculleus marisnigri JR1] gi|125862448|gb|ABN57637.1| ribonuclease III [Methanoculleus marisnigri JR1] Length = 226 Score = 40.1 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 31/158 (19%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISH---------------SYQESYER---------- 42 +E +GY +R A+ S + + ++ R Sbjct: 62 EVEADLGYPLGDREQFVIAMFRPSTRNLFDEIAEHAQSGCWCTLTDANLRELAGLHEVAG 121 Query: 43 -LEFLGDRILGLLISTLLFNHFDS-AKEGELSVRFNSLVSAETCSQVARELDLASF-IRV 99 L ++GD L + + +++ AK G L+ + +++ L I Sbjct: 122 ALAWIGDAALKIGLLPAIWD--PDIAKAGVLTGNRKAYDRNSNLARLCDRWGLYEHRIHF 179 Query: 100 SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 D + + ++ +VES+ L+L G++ + Sbjct: 180 DPDTPRST-RKVDHVKGTLVESVFGILFLREGLKGVAS 216 >gi|328712008|ref|XP_001944312.2| PREDICTED: dosage compensation regulator-like [Acyrthosiphon pisum] Length = 1430 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 25/89 (28%) Query: 156 DAKTELQEWAHAKFGVTPEYKV----------------------TFRSGPDHDPRFTVVV 193 +AK+ L ++ + +YK T ++G + PRF V Sbjct: 166 NAKSHLNQFIQSNKLKNIDYKYSCNPKTFLHEWCEKNNLEPQFKTKQAGSNRKPRFICEV 225 Query: 194 EISGLAPAQGMDCS--KRAAEQVAAAEVL 220 I+G G+ S + A++ A+ + L Sbjct: 226 IITGHDY-IGIGNSANIKYAQENASKDFL 253 Score = 38.9 bits (90), Expect = 0.57, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 7/75 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLAP-AQGMDCSKRAAEQ 213 + K L EW +++ T ++G + PR F V ++G G +K+ A+ Sbjct: 3 NPKAYLHEWCAKNNLEL-QFE-TKQAGSNCKPRLFICEVTVTGHNYIGVGNSTNKKLAQA 60 Query: 214 VAAAE---VLKREGI 225 A+ + L +EG+ Sbjct: 61 NASKDYLLYLTKEGL 75 >gi|289740325|gb|ADD18910.1| mitochondrial 39S ribosomal protein L44 precursor [Glossina morsitans morsitans] Length = 325 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 73/234 (31%), Gaps = 33/234 (14%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ---------------ESYERLEFLGDRILGLLI 55 KR+ F LL+ AL S + + L G R+ I Sbjct: 72 KRLNEDFQ-IPLLQTALIQESYVAKEKLKQEELGVENVYIQLKHNAELAEHGQRLAKAYI 130 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + + + L++ +T S VA L + + + +D + S+ Sbjct: 131 EAFVAHSLPKMPAEGHKAVTSYLLTVDTLSHVALHLGMKE-LLMDADYPPSSEAMSRSLL 189 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGV 171 ++I L G+E A +FV + Q+ L + L++ Sbjct: 190 -----AVIGCLQQSSGLERAFSFVRDFICTQLNQKDLMEIWHIDKPEEVLRQICREGGLS 244 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEIS----GLAPAQGMDCSKRAAEQVAAAEVLK 221 PE + G F + +G+ A Q+AA + L+ Sbjct: 245 EPEPRWIADCG---RIIFLAAYLVGRFSIKKLLGKGLGEDINPAIQLAARDALQ 295 >gi|205318895|gb|ACI02439.1| VP12 [Banna virus] Length = 207 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 D + + +A ++ ++ GP HDPRF + ++ Q D SK+ A Sbjct: 1 MDPVSVVHNFARSQGLPL-NFETVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRA 55 >gi|224113343|ref|XP_002316463.1| predicted protein [Populus trichocarpa] gi|222865503|gb|EEF02634.1| predicted protein [Populus trichocarpa] Length = 1077 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 10/68 (14%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGM-DCSKRAAE 212 + K+ LQ P+YK H F +VE G+ G +K+ AE Sbjct: 977 NPKSLLQTLLMRSGHSPPKYKTK------HLKTNEFRALVEFKGMQ-FVGKPKRNKQLAE 1029 Query: 213 QVAAAEVL 220 AA E L Sbjct: 1030 GDAAIEAL 1037 >gi|164606342|gb|ABY62316.1| Dicer-2-like protein [Bombyx mori] Length = 149 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 16/26 (61%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI 32 + +EK + Y F + + L AL+HSS Sbjct: 123 ADVEKILNYTFKDSTFLLNALSHSSY 148 >gi|328707654|ref|XP_001951982.2| PREDICTED: microprocessor complex subunit DGCR8-like [Acyrthosiphon pisum] Length = 477 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 15/33 (45%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + V + G+ G +K+ A+ AA L+ Sbjct: 257 YLCTVVLDGIQYGIGTGSTKKQAKVDAARATLQ 289 >gi|296425163|ref|XP_002842112.1| hypothetical protein [Tuber melanosporum Mel28] gi|295638371|emb|CAZ86303.1| unnamed protein product [Tuber melanosporum] Length = 302 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 58/165 (35%), Gaps = 33/165 (20%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD-------------------- 64 +A+TH S H +Q E+L G R+ L S L N Sbjct: 135 QAVTHKSFDHGHQPFNEKLAIYGKRVCWLHASLHLLNGPPIEDKRVYEPPNFVSSLDGTP 194 Query: 65 -SAKEGELSVRFNSLVSAE-----------TCSQVARELDLASFIRVSSDLRKDVCSFMT 112 E L + SLVS + + +AR + L + +R ++ Sbjct: 195 YRKPEPFLHRDYKSLVSIKDRNIRAILDPGKLATIARLVRLDNVMRWKPKDSDNLHESGQ 254 Query: 113 SIQAD-VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156 ++ A + +++ AL L G ++AG V + + +D Sbjct: 255 ALVATQALYAIVGALALQRGGDIAGGVVRERLLSSIDWVLEKTKD 299 >gi|153952841|ref|YP_001393606.1| hypothetical protein CKL_0202 [Clostridium kluyveri DSM 555] gi|219853506|ref|YP_002470628.1| hypothetical protein CKR_0163 [Clostridium kluyveri NBRC 12016] gi|146345722|gb|EDK32258.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219567230|dbj|BAH05214.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 141 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 10/101 (9%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD--LAS----F 96 L F+GD + +L+ T L N F S L V+ V A + S++ + L+ L+ F Sbjct: 23 LAFVGDAVYDVLVRTYLINKFQSISVHNLHVKAIKFVKAHSQSEIIKRLEKQLSEEELYF 82 Query: 97 IRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIE 133 + + + IQ A E+LI LYL G ++ Sbjct: 83 FKRGRNAKSGTVPKNADIQEYRFATGFETLIGFLYLTGEVD 123 >gi|269792682|ref|YP_003317586.1| DEAD/DEAH box helicase domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100317|gb|ACZ19304.1| DEAD/DEAH box helicase domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 994 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 7/85 (8%) Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 V ++ ++ G ++D L E+A K + P Y++ DP E+ L Sbjct: 364 VCRFLGIEMIEQGGVQQDYI-AL-EFAQGKRLLMPTYRIARLYRYAGDP---AEAELDSL 418 Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223 + S + A++ A E +R Sbjct: 419 KRGR-WSRSYQEAKEKA-REAAERL 441 >gi|210161026|gb|ACJ09363.1| VP12 [Banna virus] Length = 208 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 D + + +A ++ +K GP HDPRF + + Q D SK+ A Q Sbjct: 2 MDPVSVVHSFARSQGLPL-NFKTVGCEGPSHDPRFIIECKFLDFQH-QCTDSSKKRAIQK 59 >gi|149698252|ref|XP_001503088.1| PREDICTED: similar to adenosine deaminase domain containing 1 (testis specific) isoform 2 [Equus caballus] Length = 566 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 80 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 139 YKTGLGLNKKESRSNAAKLALDEL 162 >gi|302322202|gb|ADL16945.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322208|gb|ADL16948.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] Length = 172 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 19/43 (44%) Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S LF + EG+L+ +VS Q A L S+I+ Sbjct: 1 SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 43 >gi|302322200|gb|ADL16944.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322210|gb|ADL16949.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322214|gb|ADL16951.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] Length = 172 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 19/43 (44%) Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S LF + EG+L+ +VS Q A L S+I+ Sbjct: 1 SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 43 >gi|302322070|gb|ADL16879.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322088|gb|ADL16888.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] Length = 172 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 19/43 (44%) Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S LF + EG+L+ +VS Q A L S+I+ Sbjct: 1 SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 43 >gi|302322012|gb|ADL16850.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322072|gb|ADL16880.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] Length = 172 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 19/43 (44%) Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S LF + EG+L+ +VS Q A L S+I+ Sbjct: 1 SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 43 >gi|302321846|gb|ADL16767.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321848|gb|ADL16768.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321850|gb|ADL16769.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321854|gb|ADL16771.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321858|gb|ADL16773.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321866|gb|ADL16777.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321878|gb|ADL16783.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321880|gb|ADL16784.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321882|gb|ADL16785.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321884|gb|ADL16786.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321886|gb|ADL16787.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321888|gb|ADL16788.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321890|gb|ADL16789.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321892|gb|ADL16790.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321894|gb|ADL16791.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321896|gb|ADL16792.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321898|gb|ADL16793.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321900|gb|ADL16794.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321902|gb|ADL16795.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321904|gb|ADL16796.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321906|gb|ADL16797.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321908|gb|ADL16798.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321910|gb|ADL16799.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321912|gb|ADL16800.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321914|gb|ADL16801.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321916|gb|ADL16802.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321918|gb|ADL16803.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321920|gb|ADL16804.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321922|gb|ADL16805.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321924|gb|ADL16806.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321930|gb|ADL16809.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321932|gb|ADL16810.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321934|gb|ADL16811.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321936|gb|ADL16812.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321938|gb|ADL16813.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321940|gb|ADL16814.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321942|gb|ADL16815.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321944|gb|ADL16816.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321946|gb|ADL16817.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321948|gb|ADL16818.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321950|gb|ADL16819.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321952|gb|ADL16820.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321954|gb|ADL16821.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321956|gb|ADL16822.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321958|gb|ADL16823.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321966|gb|ADL16827.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321968|gb|ADL16828.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321976|gb|ADL16832.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321978|gb|ADL16833.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321980|gb|ADL16834.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321982|gb|ADL16835.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321984|gb|ADL16836.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321986|gb|ADL16837.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321988|gb|ADL16838.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321990|gb|ADL16839.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321994|gb|ADL16841.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321996|gb|ADL16842.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321998|gb|ADL16843.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322000|gb|ADL16844.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322002|gb|ADL16845.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322004|gb|ADL16846.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322006|gb|ADL16847.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322008|gb|ADL16848.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322010|gb|ADL16849.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322014|gb|ADL16851.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322016|gb|ADL16852.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322018|gb|ADL16853.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322020|gb|ADL16854.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322022|gb|ADL16855.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322024|gb|ADL16856.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322026|gb|ADL16857.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322028|gb|ADL16858.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322030|gb|ADL16859.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322032|gb|ADL16860.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322034|gb|ADL16861.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322036|gb|ADL16862.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322038|gb|ADL16863.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322040|gb|ADL16864.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322042|gb|ADL16865.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322044|gb|ADL16866.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322046|gb|ADL16867.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322050|gb|ADL16869.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322060|gb|ADL16874.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322062|gb|ADL16875.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322064|gb|ADL16876.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322066|gb|ADL16877.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322068|gb|ADL16878.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322074|gb|ADL16881.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322076|gb|ADL16882.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322078|gb|ADL16883.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322080|gb|ADL16884.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322082|gb|ADL16885.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322084|gb|ADL16886.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322086|gb|ADL16887.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322090|gb|ADL16889.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322092|gb|ADL16890.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322104|gb|ADL16896.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322106|gb|ADL16897.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322108|gb|ADL16898.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322110|gb|ADL16899.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322112|gb|ADL16900.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322114|gb|ADL16901.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322116|gb|ADL16902.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322118|gb|ADL16903.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322120|gb|ADL16904.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322122|gb|ADL16905.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322124|gb|ADL16906.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322126|gb|ADL16907.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322128|gb|ADL16908.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322132|gb|ADL16910.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322134|gb|ADL16911.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322136|gb|ADL16912.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322138|gb|ADL16913.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322140|gb|ADL16914.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322142|gb|ADL16915.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322144|gb|ADL16916.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322146|gb|ADL16917.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322148|gb|ADL16918.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322152|gb|ADL16920.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322154|gb|ADL16921.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322156|gb|ADL16922.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322158|gb|ADL16923.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322160|gb|ADL16924.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322162|gb|ADL16925.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322164|gb|ADL16926.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322166|gb|ADL16927.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322168|gb|ADL16928.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322170|gb|ADL16929.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322178|gb|ADL16933.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322204|gb|ADL16946.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322206|gb|ADL16947.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322212|gb|ADL16950.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] Length = 172 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 19/43 (44%) Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S LF + EG+L+ +VS Q A L S+I+ Sbjct: 1 SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 43 >gi|210161028|gb|ACJ09364.1| VP12 [Banna virus] gi|210161030|gb|ACJ09365.1| VP12 [Banna virus] Length = 208 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 D + + +A ++ +K GP HDPRF + + Q D SK+ A Q Sbjct: 2 MDPVSVVHSFARSQGLPL-NFKTVGCEGPSHDPRFIIECKFLDFQH-QCTDSSKKRAIQK 59 >gi|149698250|ref|XP_001503078.1| PREDICTED: similar to adenosine deaminase domain containing 1 (testis specific) isoform 1 [Equus caballus] Length = 577 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 80 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 139 YKTGLGLNKKESRSNAAKLALDEL 162 >gi|302321926|gb|ADL16807.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321928|gb|ADL16808.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321960|gb|ADL16824.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321972|gb|ADL16830.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321974|gb|ADL16831.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322094|gb|ADL16891.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322098|gb|ADL16893.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322102|gb|ADL16895.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322150|gb|ADL16919.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322172|gb|ADL16930.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322174|gb|ADL16931.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322182|gb|ADL16935.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322184|gb|ADL16936.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322186|gb|ADL16937.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322190|gb|ADL16939.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322192|gb|ADL16940.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322194|gb|ADL16941.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322196|gb|ADL16942.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322198|gb|ADL16943.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] Length = 172 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 19/43 (44%) Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S LF + EG+L+ +VS Q A L S+I+ Sbjct: 1 SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 43 >gi|321456671|gb|EFX67772.1| hypothetical protein DAPPUDRAFT_330706 [Daphnia pulex] Length = 153 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 64/183 (34%), Gaps = 45/183 (24%) Query: 46 LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 +GDR+LG+ I+ + + V A++ +I + Sbjct: 1 MGDRVLGVKIANFVLRNCKD------------TVDAKS------------YIEIVESEDD 36 Query: 106 DVCSFMTSI-----QADVVESLIAALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDA 157 F T + ADV E+L ++ D G F+DK W+ GK Sbjct: 37 PKFRFATYVQPLKELADVWEALAGEIFEDSG-----DFIDKTWEVIAPLLAPVGKISYWP 91 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT-VVVEISGLAPAQGMDCSKRAAEQVAA 216 +Q K G + EY T T V +EI + +G++ + + A+ AA Sbjct: 92 SNPVQNI-QRKCGKSVEYLETKI------KEMTCVTLEIYSVTIERGLEKNVKVAKSAAA 144 Query: 217 AEV 219 Sbjct: 145 KNA 147 >gi|298713070|emb|CBJ48845.1| conserved unknown protein [Ectocarpus siliculosus] Length = 1117 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 20/81 (24%), Gaps = 23/81 (28%) Query: 163 EWAHAKFGVTPEYKVTFRSGPD----HDPRFTVVVEISGL----------------APAQ 202 + V Y + P D + V + G Q Sbjct: 138 QCLQRHLKV--SYDIVEER-PATAMCPDKHVVMEVRLEGEWMEPSSDGGITRTIGLRRFQ 194 Query: 203 GMDCSKRAAEQVAAAEVLKRE 223 G+ S R AA LK+ Sbjct: 195 GIGKSTREGRMNAAETALKKL 215 >gi|51247554|pdb|1T4N|A Chain A, Solution Structure Of Rnt1p Dsrbd Length = 94 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%) Query: 186 DPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221 DP V + G G+ + + A AA L+ Sbjct: 35 DPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 71 >gi|302321852|gb|ADL16770.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321856|gb|ADL16772.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321860|gb|ADL16774.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321862|gb|ADL16775.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321864|gb|ADL16776.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321868|gb|ADL16778.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321870|gb|ADL16779.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321872|gb|ADL16780.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321874|gb|ADL16781.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321876|gb|ADL16782.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321962|gb|ADL16825.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321964|gb|ADL16826.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321970|gb|ADL16829.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302321992|gb|ADL16840.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322048|gb|ADL16868.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322052|gb|ADL16870.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322054|gb|ADL16871.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322056|gb|ADL16872.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322058|gb|ADL16873.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322096|gb|ADL16892.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322100|gb|ADL16894.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322130|gb|ADL16909.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322176|gb|ADL16932.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322180|gb|ADL16934.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] gi|302322188|gb|ADL16938.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata] Length = 172 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 19/43 (44%) Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 S LF + EG+L+ +VS Q A L S+I+ Sbjct: 1 SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 43 >gi|62244087|ref|NP_001006978.2| adenosine deaminase domain-containing protein 1 [Rattus norvegicus] gi|123780593|sp|Q3KR54|ADAD1_RAT RecName: Full=Adenosine deaminase domain-containing protein 1; AltName: Full=Testis nuclear RNA-binding protein gi|76780258|gb|AAI05907.1| Adenosine deaminase domain containing 1 (testis specific) [Rattus norvegicus] Length = 619 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ +K + + + L ++A + V + K T +G P F + G+ Sbjct: 122 KKIPKEFIMKYRRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 180 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 181 YKTGLGQNKKESRSNAAKLALDEL 204 >gi|225557170|gb|EEH05457.1| RNase III domain-containing protein [Ajellomyces capsulatus G186AR] Length = 268 Score = 39.7 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 22/133 (16%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLIST-----------------LLFNHFDSAKEGE 70 TH S + ERL +LG +I+ L S F+ Sbjct: 116 THKSFDQGRRGFNERLSYLGKQIVQLQASLSLLESSSNASPEKLEDPYGRTAFEHPSLQG 175 Query: 71 LSVR----FNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAA 125 L + N V+ +++A++ L +R R D S + + + +++ A Sbjct: 176 LDILTEDNKNMRVNRTKLAELAQQYKLQEVLRWVPRYRNDLAASGLEVVLTQAIYAVVGA 235 Query: 126 LYLDGGIEVAGTF 138 + L+ G VA Sbjct: 236 VALEKGGAVANQV 248 >gi|261326075|emb|CBH08901.1| MP90 [Trypanosoma brucei gambiense DAL972] Length = 818 Score = 39.7 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 15/121 (12%) Query: 19 NRSLLEKAL-----THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA------K 67 + SL +A T + H + ++ERLE++GD G +S + F Sbjct: 245 DISLAAQAPDLFDNTAQQVHHRRRVAFERLEYIGDNSWGNHLSNRMMLLFPDRQWTYSQN 304 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 + ++ T + L + + + I+ADVVE++I L+ Sbjct: 305 AYTFNCFRDACEMNVTLEFMFDTLRVGELLPPGVREKLGTG----KIKADVVEAVIGELH 360 Query: 128 L 128 + Sbjct: 361 V 361 >gi|29293894|gb|AAO72961.1| RNA editing complex protein MP90 [Trypanosoma brucei] Length = 818 Score = 39.7 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 15/121 (12%) Query: 19 NRSLLEKAL-----THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA------K 67 + SL +A T + H + ++ERLE++GD G +S + F Sbjct: 245 DISLAAQAPDLFDNTAQQVHHRRRVAFERLEYIGDNSWGNHLSNRMMLLFPDRQWTYSQN 304 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 + ++ T + L + + + I+ADVVE++I L+ Sbjct: 305 AYTFNCFRDACEMNVTLEFMFDTLRVGELLPPGVREKLGTG----KIKADVVEAVIGELH 360 Query: 128 L 128 + Sbjct: 361 V 361 >gi|115504157|ref|XP_001218871.1| RNA-editing complex protein; nuclease; KREPB1 [Trypanosoma brucei TREU927] gi|83642353|emb|CAJ16173.1| RNA-editing complex protein; nuclease, putative; KREPB1 [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 817 Score = 39.7 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 15/121 (12%) Query: 19 NRSLLEKAL-----THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA------K 67 + SL +A T + H + ++ERLE++GD G +S + F Sbjct: 244 DISLAAQAPDLFDNTAQQVHHRRRVAFERLEYIGDNSWGNHLSNRMMLLFPDRQWTYSQN 303 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 + ++ T + L + + + I+ADVVE++I L+ Sbjct: 304 AYTFNCFRDACEMNVTLEFMFDTLRVGELLPPGVREKLGTG----KIKADVVEAVIGELH 359 Query: 128 L 128 + Sbjct: 360 V 360 >gi|308812800|ref|XP_003083707.1| unnamed protein product [Ostreococcus tauri] gi|116055588|emb|CAL58256.1| unnamed protein product [Ostreococcus tauri] Length = 164 Score = 39.7 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 1/43 (2%) Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 V P F+V +E+ G S + A++ AA Sbjct: 90 VIQEQDPA-KQTFSVRLELGSTTKGSGEAKSIKVAKRQAAKSA 131 >gi|296195646|ref|XP_002745514.1| PREDICTED: adenosine deaminase domain-containing protein 1-like [Callithrix jacchus] Length = 509 Score = 39.7 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K K+ K + + + L ++A + V + K T +G P F + G+ Sbjct: 79 KKIPKEFITKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 137 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +K+ + AA L Sbjct: 138 YKTGLGQNKKESRSNAAKLALDEL 161 >gi|281210415|gb|EFA84581.1| hypothetical protein PPL_01571 [Polysphondylium pallidum PN500] Length = 198 Score = 39.7 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 7/84 (8%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK-EGELSV 73 + F ++ AL + + +E E GD+ILG + ++ +D G S Sbjct: 22 HKFIKDKIIVSAL------YPKSDDFENKECFGDKILGYRVVEMVTTEYDFVPKPGTTSR 75 Query: 74 RFNSLVSAETCSQVARELDLASFI 97 +S V+ ET SQ+ L++ +I Sbjct: 76 ILDSSVANETLSQLYSRLEIEPYI 99 >gi|147791245|emb|CAN67889.1| hypothetical protein VITISV_013607 [Vitis vinifera] Length = 558 Score = 39.7 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAEQV 214 +AK LQ P YK + F V I G CS K+ AE+ Sbjct: 466 NAKGRLQTVLIRGGHQAPVYKTRQLK----NNMFRSTV-IFNELQFVGQPCSXKKLAEKD 520 Query: 215 AAAEVLK 221 AAA+ L+ Sbjct: 521 AAAKALE 527 >gi|312283555|dbj|BAJ34643.1| unnamed protein product [Thellungiella halophila] Length = 502 Score = 39.7 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 11/68 (16%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPD------HDPRFTVVVEISGLAPAQGMDCSKRAAE 212 T L+E ++ +++ F+S H VEI G +G+ + A Sbjct: 395 TALRELCASEG-----FEMAFQSQRPLPSDMVHRDELHAQVEIDGRVLGEGVGSTWDEAR 449 Query: 213 QVAAAEVL 220 AA L Sbjct: 450 MQAAERAL 457 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 18/36 (50%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF+V +SG +G+ S+R A AA ++ Sbjct: 291 RFSVETWLSGEKIGEGIGKSRREALHKAAEVSIQNL 326 >gi|321259085|ref|XP_003194263.1| hypothetical protein CGB_E3090W [Cryptococcus gattii WM276] gi|317460734|gb|ADV22476.1| Hypothetical protein CGB_E3090W [Cryptococcus gattii WM276] Length = 271 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 36/171 (21%) Query: 19 NRSLLEKALTHSSISHSYQ--------------------ESYERLEFLGDRILGLLISTL 58 N +L + LTH S ++ RL FLG R L ++ Sbjct: 80 NPALALQILTHKSYRFAHPVRHSPSLSEAQSPIAQESSAPHNARLAFLGRRALSTYLALF 139 Query: 59 LFNHFDS-----------AKEGELSVRFNSLVSAETCS-QVARELDLASFIRVSSDLRKD 106 + + S + EL R +L V E + +R + Sbjct: 140 VHEAYGSSGALREQGSDFLRGKELEERLTALRHVNNLGRMVGGEWRVEDVLRWDRNQTAQ 199 Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 S S++ VE+++ ++ G A + + + RD Sbjct: 200 -ASGNLSVKGQTVEAILGGVFTQFGSPAAHRAFHLHVLPKFVSQ---LRDP 246 >gi|138854|sp|P27586|NSP3_ROTPC RecName: Full=Non-structural protein 3; Short=NSP3; Contains: RecName: Full=p38; Contains: RecName: Full=p8 gi|333308|gb|AAA47087.1| NS34 protein [Porcine rotavirus C] Length = 402 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 18/29 (62%) Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G A A SK+ A+++AA ++L + G+ Sbjct: 374 GSAEAVAKGRSKKEAKRIAAKDILDQIGL 402 >gi|242045250|ref|XP_002460496.1| hypothetical protein SORBIDRAFT_02g029450 [Sorghum bicolor] gi|241923873|gb|EER97017.1| hypothetical protein SORBIDRAFT_02g029450 [Sorghum bicolor] Length = 123 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 7/49 (14%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAEQVAAAEVLKREGI 225 GPDH PRF V + S R AE AA L R + Sbjct: 15 EGPDHTPRFRAAVTFNSETF---EGPSGCTTLRQAEHAAAEVTLARLSL 60 >gi|58268124|ref|XP_571218.1| hypothetical protein CNE02300 [Cryptococcus neoformans var. neoformans JEC21] gi|134111961|ref|XP_775516.1| hypothetical protein CNBE2300 [Cryptococcus neoformans var. neoformans B-3501A] gi|50258175|gb|EAL20869.1| hypothetical protein CNBE2300 [Cryptococcus neoformans var. neoformans B-3501A] gi|57227452|gb|AAW43911.1| hypothetical protein CNE02300 [Cryptococcus neoformans var. neoformans JEC21] Length = 287 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 52/170 (30%), Gaps = 36/170 (21%) Query: 20 RSLLEKALTHSSISHSYQ--------------------ESYERLEFLGDRILGLLISTLL 59 +L + LTH S ++ RL FLG R L ++ + Sbjct: 97 PALALQILTHKSYRFAHPVRHSPSLSDAQSSIGPESSAPHNARLAFLGRRALSTYLALFV 156 Query: 60 FNHFDS-----------AKEGELSVRFNSLVSAETCS-QVARELDLASFIRVSSDLRKDV 107 + S + EL R +L V E + +R + + Sbjct: 157 HEAYGSSGALREQGSDFLRGKELEERLTALRHVNNLGRMVGGEWRVEDVLRWDRN-QTSQ 215 Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 S S++ VE+++ ++ G A + + + RD Sbjct: 216 ASGNLSVKGQTVEAILGGVFTQFGSPAAHRAFHLHVLPKFVSQ---LRDP 262 >gi|240277717|gb|EER41225.1| RNase III domain-containing protein [Ajellomyces capsulatus H143] Length = 330 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 22/133 (16%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLIST-----------------LLFNHFDSAKEGE 70 TH S + ERL +LG +I+ L S F+ Sbjct: 178 THKSFDQGRRGFNERLSYLGKQIVQLQASLSLLESSSSASPEKLEDPYGRTAFEHPSLQG 237 Query: 71 LSVR----FNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAA 125 L + N V+ +++A++ L +R R D S + + + +++ A Sbjct: 238 LDILTEDNKNMRVNRTKLAELAQQYKLQEVLRWVPRYRNDLAASGLEVVLTQAIYAVVGA 297 Query: 126 LYLDGGIEVAGTF 138 + L+ G VA Sbjct: 298 VALEKGGAVANQV 310 >gi|221122562|ref|XP_002164293.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Hydra magnipapillata] Length = 1280 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 7/73 (9%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210 +AKT+L ++ + P + + GPDH F + + SK+ Sbjct: 144 NAKTKLHQFLNENK--IPADFIYYSEGPDHQRLFRAELSFWLKEADRKIIGKEAAHSKKL 201 Query: 211 AEQVAAAEVLKRE 223 A Q + ++++ Sbjct: 202 AAQYCSRSLVRQL 214 Score = 38.1 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 W + + P + PD RF +I G+ A G SK+ E AA ++L Sbjct: 12 WVGKQMKLIPHFYAV----PDGPHRFNYQAKIDGINYIAFGGGPSKKEGEAAAARDLLN 66 >gi|332029375|gb|EGI69330.1| Double-stranded RNA-specific editase 1 [Acromyrmex echinatior] Length = 356 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP + + V E+ G G SK A Q AA LK Sbjct: 125 ETQGPMPNSLYLVHAELDGKTY-VGQGLSKPLARQNAAENALKAL 168 >gi|328785857|ref|XP_395948.4| PREDICTED: hypothetical protein LOC412491 [Apis mellifera] Length = 521 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP + + V E+ G G SK A Q AA LK Sbjct: 282 ETQGPMPNSLYLVHAELDGKTY-VGQGLSKPLARQNAAENALKAL 325 >gi|221108219|ref|XP_002168585.1| PREDICTED: hypothetical protein [Hydra magnipapillata] Length = 180 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 9/85 (10%) Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS--GPDHDPRFTVVVEIS 196 + + + K R D + LQ + PEYK S G F + Sbjct: 25 IKAAYPLASEKMLAERVDYTSLLQIVCQKEKWNLPEYKECTSSLGG------FGYQCRVG 78 Query: 197 GLAP-AQGMDCSKRAAEQVAAAEVL 220 ++ + +K+ A++ AA L Sbjct: 79 LKWYESKEFNSTKKDAKRNAAKWAL 103 >gi|291519017|emb|CBK74238.1| Uncharacterized protein conserved in bacteria [Butyrivibrio fibrisolvens 16/4] Length = 146 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 11/108 (10%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---------DL 93 L ++GD I ++I ++L N ++A +L R +S+V A T + +A L D Sbjct: 28 LAYIGDAIFDVVIRSILVNKGNTA-VNKLHQRASSVVKAHTQAAMATALMDSFTDEEADW 86 Query: 94 ASFIRVSSDLRKDVCSF-MTSIQADVVESLIAALYLDGGIEVAGTFVD 140 R S K + M ++A E+++ LYL G ++ ++ Sbjct: 87 YRRGRNSKPHTKAKNATTMDYLEATGFEAVMGYLYLTGNMDRICELIN 134 >gi|255085362|ref|XP_002505112.1| predicted protein [Micromonas sp. RCC299] gi|226520381|gb|ACO66370.1| predicted protein [Micromonas sp. RCC299] Length = 514 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 6/43 (13%) Query: 190 TVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLK-----REGIW 226 T + G +G +K+ A AA + L+ ++G W Sbjct: 415 TATCILDDGETIGRGRGVNKKRAIMEAARDALRHLRATKDGEW 457 >gi|150863903|ref|XP_001382538.2| hypothetical protein PICST_55080 [Scheffersomyces stipitis CBS 6054] gi|149385159|gb|ABN64509.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 286 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 15/140 (10%) Query: 18 ANRSLLEKALTHSSISHS-------------YQESYERLEFLGDRILGLLISTLLFNHFD 64 +N +LL + +T S + E+L LG +L LL+ +L F Sbjct: 148 SNDALLLRVMTDKSYHQPSDILESETRTHDINRTHNEKLSILGRSLLELLLYQILDERFP 207 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + E+ V + L+S +++A +L + + D M I + S +A Sbjct: 208 NMYGEEMFVFRHKLLSPGILTKLAFGYNLVDPYKYNLSSEIDSNRKME-IFGKIFLSYVA 266 Query: 125 ALYLDG-GIEVAGTFVDKYW 143 L +DG ++ K + Sbjct: 267 GLSMDGYTQSEIKLWIRKLY 286 >gi|115883113|ref|XP_001197513.1| PREDICTED: similar to NREBP, partial [Strongylocentrotus purpuratus] gi|115970343|ref|XP_001193598.1| PREDICTED: similar to NREBP, partial [Strongylocentrotus purpuratus] Length = 62 Score = 39.3 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 16/45 (35%) Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 + ++ + L E + + P ++V GP H F Sbjct: 16 KVIRKDLSGKHPVMALNELCNKRRWGKPNFEVVREDGPPHKKNFV 60 >gi|313226997|emb|CBY22143.1| unnamed protein product [Oikopleura dioica] Length = 551 Score = 39.3 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V +E + +G+ +K+ AE AA +LK Sbjct: 44 EFKVTLE-NNGEIFEGIGSNKKKAEHRAAFNLLK 76 >gi|147832855|emb|CAN72816.1| hypothetical protein VITISV_004100 [Vitis vinifera] Length = 894 Score = 39.3 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 8/29 (27%), Positives = 12/29 (41%) Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V G +G ++R A+ AA L Sbjct: 683 EVWNQGEKIGEGTGKTRREAQCQAAEASL 711 Score = 37.0 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 13/30 (43%) Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 VEI G +G + A+ AA + L Sbjct: 812 AQVEIDGQVLGKGTGSTWDDAKMQAAEKAL 841 >gi|70727477|ref|YP_254393.1| hypothetical protein SH2478 [Staphylococcus haemolyticus JCSC1435] gi|68448203|dbj|BAE05787.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 131 Score = 39.3 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 13/114 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL-DLA------- 94 L ++GD +L + + +K L S VSA++ +Q L ++ Sbjct: 14 LAYMGDAVLDQHVREYIVLKL-QSKPNRLHQVSKSYVSAKSQAQTLETLFEMGWFTDEEL 72 Query: 95 SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWK 144 ++ + + + T IQ + +E++I LYLD E +D + Sbjct: 73 DIVKRGRNAKSHTKAKNTDIQTYRKSSGLEAVIGYLYLDHQEERLENLLDMIVQ 126 >gi|290976137|ref|XP_002670797.1| predicted protein [Naegleria gruberi] gi|284084360|gb|EFC38053.1| predicted protein [Naegleria gruberi] Length = 656 Score = 39.3 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 16/23 (69%) Query: 7 STLEKRIGYAFANRSLLEKALTH 29 ++E IGY F+N+S L ALTH Sbjct: 336 ESVEDIIGYTFSNKSYLMIALTH 358 >gi|126304916|ref|XP_001374839.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 507 Score = 39.3 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 16/35 (45%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F+V + ++ +G SK+ A+ AA L Sbjct: 117 RHFSVCAMLDEMSCPEGTGSSKKEAKGQAAILALN 151 >gi|157876665|ref|XP_001686677.1| RNA editing complex protein MP61 [Leishmania major] gi|38073409|gb|AAR10826.1| MP61 [Leishmania major] gi|68129752|emb|CAJ09058.1| RNA editing complex protein MP61 [Leishmania major strain Friedlin] Length = 587 Score = 39.3 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 51/117 (43%), Gaps = 14/117 (11%) Query: 18 ANRSLLEKALTHS---SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA---KEGEL 71 +R +L + S S + + +ERLEF+GD ++ +++ ++ F +G++ Sbjct: 238 KDRGILVETFNVSDNQSTNSARSWEFERLEFVGDNVVKYVLNNIISCAFPPHEGGTKGKM 297 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 + + + ++ LDL ++ ++D+VE+L A L + Sbjct: 298 TCFQFVMDGNDGLARGYDHLDLQQL--------ASSPRVVSKFKSDIVETLFAELQM 346 >gi|71030286|ref|XP_764785.1| hypothetical protein [Theileria parva strain Muguga] gi|68351741|gb|EAN32502.1| hypothetical protein TP02_0219 [Theileria parva] Length = 836 Score = 39.3 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 9/87 (10%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF----DSAKEGEL 71 F N LL L SS + S ++LE + D + + ++ LF H+ +S E Sbjct: 96 PFLNLELLNMILV-SSYTLGIPLSSQQLETILDSVHQHISTSNLFKHYNSDKNSDSPNET 154 Query: 72 SVRF---NSLVSA-ETCSQVARELDLA 94 S ++VS + + +AR L Sbjct: 155 SPVRIGIEAIVSILHSLATLARRFPLH 181 >gi|300857266|ref|YP_003782250.1| hypothetical protein CLJU_c41260 [Clostridium ljungdahlii DSM 13528] gi|300437381|gb|ADK17148.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528] Length = 141 Score = 39.3 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 10/101 (9%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--DLAS----F 96 L F+GD + + + T L + + L V V A + S+V ++L +L+ F Sbjct: 23 LAFIGDAVYEVFVRTYLASEHRNMSVHNLHVEAIKFVKAHSQSEVIKKLEQELSDREMYF 82 Query: 97 IRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIE 133 + + + +Q A E+LI LYL G + Sbjct: 83 FKKGRNAKSGTVPKNADVQEYRFATGFETLIGFLYLIGNRD 123 >gi|301113738|ref|XP_002998639.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262111940|gb|EEY69992.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 653 Score = 39.3 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGE--LSVRFNSLVSAETCSQVARELDLASFIRVS 100 E+LGD ++G L+ L + F A ++V+ +QV + A R + Sbjct: 62 FEWLGDAVIGELVGRCLLSQFHQAPLSARVFRNLRLAVVTNRNLAQVYGAMGYAVVQRRN 121 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYL 128 +ADVVE+++ L L Sbjct: 122 LQEDASWKKIKLKQRADVVEAVVGELVL 149 >gi|322799941|gb|EFZ21067.1| hypothetical protein SINV_02537 [Solenopsis invicta] Length = 320 Score = 39.3 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP + + V E+ G G SK A Q AA LK Sbjct: 87 ESQGPMPNSLYLVHAELDGKTY-VGQGLSKPLARQNAAENALKAL 130 >gi|307169043|gb|EFN61887.1| Double-stranded RNA-specific editase Adar [Camponotus floridanus] Length = 324 Score = 39.3 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP + + V E+ G G SK A Q AA LK Sbjct: 93 ETQGPMTNSLYLVHAELDGKTY-VGQGLSKPLARQNAAENALKAL 136 >gi|294654988|ref|XP_457071.2| DEHA2B02376p [Debaryomyces hansenii CBS767] gi|199429605|emb|CAG85059.2| DEHA2B02376p [Debaryomyces hansenii] Length = 553 Score = 39.3 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 + S S + E LE +G I+ + +L F ++ E + + L S+ + Sbjct: 240 KTCSESTSKRNENLEIMGKSIISCCVVYVLEKSFTNSNETSIEYLRSKLNQESYLSKFYK 299 Query: 90 ELD 92 ELD Sbjct: 300 ELD 302 >gi|297699341|ref|XP_002826745.1| PREDICTED: adenosine deaminase domain-containing protein 2-like isoform 2 [Pongo abelii] Length = 662 Score = 39.3 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%) Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V GP F+V E+ G+ G SK A+Q AA L Sbjct: 204 VVEELGP--CFPFSVSAELDGVVCPAGTANSKTEAKQQAALSAL 245 >gi|328726248|ref|XP_001948877.2| PREDICTED: double-stranded RNA-specific editase 1-like [Acyrthosiphon pisum] Length = 583 Score = 39.3 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T+ V +SG G SK+ A+++A LK Sbjct: 148 TISVIVSGNKY-IGYGKSKKEAKEIACRNALK 178 >gi|297485148|ref|XP_002694788.1| PREDICTED: testis nuclear RNA-binding protein-like [Bos taurus] gi|296478213|gb|DAA20328.1| testis nuclear RNA-binding protein-like [Bos taurus] Length = 597 Score = 39.3 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V VE+ G+ G SK A+Q AA L Sbjct: 159 FSVSVELDGVVCPPGTANSKLEAKQQAALSAL 190 >gi|297461712|ref|XP_873139.3| PREDICTED: adenosine deaminase domain containing 2 [Bos taurus] Length = 597 Score = 39.3 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V VE+ G+ G SK A+Q AA L Sbjct: 159 FSVSVELDGVVCPPGTANSKLEAKQQAALSAL 190 >gi|154285512|ref|XP_001543551.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150407192|gb|EDN02733.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 203 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 22/133 (16%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLIST-----------------LLFNHFDSAKEGE 70 TH S + ERL +LG +I+ L S F+ Sbjct: 51 THKSFDQGRRGFNERLSYLGKQIVQLQASLSLLEGSSSASPEKLEDPYGRTAFEHPSLQG 110 Query: 71 LSVR----FNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAA 125 L + N V+ +++A++ L +R R D S + + + +++ A Sbjct: 111 LDILTEDNKNMRVNRTKLAELAQQYKLQEVLRWVPRYRNDLAASGLEVVLTQAIYAVVGA 170 Query: 126 LYLDGGIEVAGTF 138 + L+ G VA Sbjct: 171 VALEKGGAVANQV 183 >gi|73992223|ref|XP_867068.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen homolog isoform 3 [Canis familiaris] Length = 257 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + V++ G A+G +K+ A++ AA +L+ G Sbjct: 1 MQVKV-GNHTAEGAGTNKKVAKRNAAENMLEILG 33 >gi|15896404|ref|NP_349753.1| hypothetical protein CA_C3156 [Clostridium acetobutylicum ATCC 824] gi|15026222|gb|AAK81093.1|AE007810_12 Uncharacterized conserved protein, YACZ B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] gi|325510561|gb|ADZ22197.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018] Length = 141 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--DL-ASFIRV 99 L F+GD + + + + +D L ++ V A S +E+ +L +R+ Sbjct: 23 LAFVGDAVYENFVRIYIVDKYDEMTVHRLHIKAIEFVKAHAQSTFMKEIYDELNEEEVRI 82 Query: 100 SSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVDKYWK 144 R + + E+LI LYL I+ ++K + Sbjct: 83 YKRGRNAKSATSPKNADICEYRASTGFEALIGYLYLTNQIDRLNFILEKVVE 134 >gi|123440333|ref|XP_001310928.1| hypothetical protein [Trichomonas vaginalis G3] gi|121892718|gb|EAX97998.1| hypothetical protein TVAG_114500 [Trichomonas vaginalis G3] Length = 473 Score = 38.9 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 12/123 (9%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 S ++ S ER +GD IL ++I+ + + K ++ + VS + + Sbjct: 209 PSFVKNHNTS-ER---IGDAILEVVITNSIISSLVGKKNYFVNKQIRIAVSNKLFGVIGE 264 Query: 90 ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 + S + + D ES+ LY G + TF K + Sbjct: 265 HFNFPSCFI--------GPFDVEKLPGDCFESIAGKLYKLYGYDKVVTFWQKSLFAIPID 316 Query: 150 SGK 152 + Sbjct: 317 VAQ 319 >gi|295692212|ref|YP_003600822.1| ribonuclease iii [Lactobacillus crispatus ST1] gi|295030318|emb|CBL49797.1| Ribonuclease III [Lactobacillus crispatus ST1] Length = 147 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 14/137 (10%) Query: 34 HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 + + + L +LGD + ++I L K L VSA+ + + ++ Sbjct: 13 NPDTLNGQTLAYLGDAVYEVIIRRHLV-KGGIVKPQVLQREATHYVSAKAQAALVTKMQD 71 Query: 94 ASFI--------RVSSDLRKDVCSFMTSI----QADVVESLIAALYLDGGIEVAGTFVDK 141 + R + + + TS+ + E++I LYL G + + K Sbjct: 72 EEMLTDDELAAFRRGRNAKSHTKAKNTSLKTYQLSTGFEAMIGYLYLLGKNDRVAD-LSK 130 Query: 142 YWKQRALKSGKFRRDAK 158 + + G D K Sbjct: 131 WCIDTVEEDGLKNYDFK 147 >gi|156541332|ref|XP_001600771.1| PREDICTED: similar to GA14612-PA [Nasonia vitripennis] Length = 701 Score = 38.9 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V EI G G SK A Q AA LK Sbjct: 484 FLVHAEIEGKTY-VGQGVSKPLARQNAAENALK 515 >gi|219689078|ref|NP_001137272.1| interferon-induced, double-stranded RNA-activated protein kinase [Equus caballus] gi|61889230|gb|AAX47275.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Equus caballus] Length = 540 Score = 38.9 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S + ++ + + Y+ + S RF +I +K+ Sbjct: 92 SEELSKNYIGLINTYTQRNQLSL-NYE-QYESRDGGPKRFRCKYKIGWKEYPIASGSTKQ 149 Query: 210 AAEQVAAAEVLKR 222 A+Q+AA + Sbjct: 150 EAKQLAAKLAYDQ 162 Score = 36.2 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 EL ++ V +++ ++GP HD FT V I+G + Sbjct: 13 ELNKYRQKHNVVL-DFRELSKTGPPHDLTFTFRVIINGREFPEAEG 57 >gi|329767863|ref|ZP_08259377.1| hypothetical protein HMPREF0428_01074 [Gemella haemolysans M341] gi|328838651|gb|EGF88250.1| hypothetical protein HMPREF0428_01074 [Gemella haemolysans M341] Length = 143 Score = 38.9 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 53/136 (38%), Gaps = 18/136 (13%) Query: 27 LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86 T + ++ Q L ++GD I ++ + + K +L +++VSA + Sbjct: 9 FTEKNFANPNQMQALTLAYIGDSIYDIMSREYVMKNHLG-KINDLHKTVSTIVSARAQAS 67 Query: 87 VARELDLASFIRVSSDL---------RKDVCSFMTSI----QADVVESLIAALYLDGGIE 133 + L++ I + + + + SI A +E++ LYL+ E Sbjct: 68 FMENI-LSNGILTEQEEKIYNRAKNQKNNSKAKNASIMEYKLATGLEAVFGYLYLEKNFE 126 Query: 134 VAG---TFVDKYWKQR 146 ++ + ++++ Sbjct: 127 RLEEMFNYIIRLYEEK 142 >gi|156408836|ref|XP_001642062.1| predicted protein [Nematostella vectensis] gi|156229203|gb|EDO49999.1| predicted protein [Nematostella vectensis] Length = 497 Score = 38.9 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 1/71 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 ++ + L E+A + ++V + P FT+ + + + Sbjct: 10 AAINKNPVSALNEYAQKN-RMEVAFEVVKDGRNFNRPPFTMFARVGPHRFPSATSSNMKD 68 Query: 211 AEQVAAAEVLK 221 A + AA L+ Sbjct: 69 ARREAADMALR 79 >gi|47227529|emb|CAG04677.1| unnamed protein product [Tetraodon nigroviridis] Length = 349 Score = 38.9 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 14/33 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F I G+ G+ +K+ A AA L+ Sbjct: 46 FAFCALIDGVEHKTGIGKNKKEARLAAAQYALE 78 >gi|307933353|dbj|BAJ21512.1| capsid protein [Omono River virus] Length = 1687 Score = 38.9 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 P YK+ HDP F+ + G+ + G +K A+ AA+ +L+ Sbjct: 425 LPVYKIEAEREGTHDPSFSCQLTFRGITKSSFGK-KTKHEAKTAAASLILEEL 476 >gi|325093801|gb|EGC47111.1| RNase III domain-containing protein [Ajellomyces capsulatus H88] Length = 241 Score = 38.9 bits (90), Expect = 0.54, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 22/133 (16%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLIST-----------------LLFNHFDSAKEGE 70 TH S + ERL +LG +I+ L S F+ Sbjct: 51 THKSFDQGRRGFNERLSYLGKQIVQLQASLSLLESSSSASPEKLEDPYGRTAFEHPSLQG 110 Query: 71 LSVR----FNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAA 125 L + N V+ +++A++ L +R R D S + + + +++ A Sbjct: 111 LDILTEDNKNMRVNRTKLAELAQQYKLQEVLRWVPRYRNDLAASGLEVVLTQAIYAVVGA 170 Query: 126 LYLDGGIEVAGTF 138 + L+ G VA Sbjct: 171 VALEKGGAVANQV 183 >gi|307109276|gb|EFN57514.1| hypothetical protein CHLNCDRAFT_143101 [Chlorella variabilis] Length = 747 Score = 38.9 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S L+ +GY++ + L++AL + + RL +LG +L LL + F Sbjct: 609 LSRLQGALGYSWRKQEALQEAL-----GGDSRGATGRLAWLGSALLQLLAAEEAFRQQPD 663 Query: 66 -AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK-DVCSFMTSIQADVVESLI 123 A EL +L + + L + R + A++ + + Sbjct: 664 GAGPQELQEAAEALAAPAALAAKPGAATLGGLVSAGPGARSLQAVADKA---AELYAACL 720 Query: 124 AALYLDGG 131 A ++DGG Sbjct: 721 GAAFVDGG 728 >gi|146103165|ref|XP_001469498.1| RNA editing complex protein MP61 [Leishmania infantum] gi|134073868|emb|CAM72607.1| RNA editing complex protein MP61 [Leishmania infantum JPCM5] gi|322503465|emb|CBZ38550.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 587 Score = 38.9 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 52/117 (44%), Gaps = 14/117 (11%) Query: 18 ANRSLLEKALTHS---SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA---KEGEL 71 +R +L + S S + + +ERLEF+GD ++ ++++++ F +G++ Sbjct: 238 KDRGILVETFNVSDNQSTNSARSWEFERLEFVGDNVVKYVLNSIISCAFPPHEGGTKGKM 297 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 + + + ++ LDL ++ ++D+VE+L A L + Sbjct: 298 TCFQFVMDGNDGLARGYDHLDLQQL--------ASSPRVVSKFKSDIVETLFAELQM 346 >gi|282875019|ref|ZP_06283894.1| RNase3 domain protein [Staphylococcus epidermidis SK135] gi|281296347|gb|EFA88866.1| RNase3 domain protein [Staphylococcus epidermidis SK135] Length = 128 Score = 38.9 bits (90), Expect = 0.56, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 13/110 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASF----- 96 L ++GD +L + + +K L S VSA++ ++ L + F Sbjct: 11 LAYMGDAVLDQHVREYIVLKL-QSKPHRLHQVSKSYVSAKSQAKTLEYLLGIDWFTEEEL 69 Query: 97 --IRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVD 140 ++ + + + T IQ + +E++I LYLD E ++ Sbjct: 70 SVLKRGRNAKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLLE 119 >gi|255587179|ref|XP_002534167.1| conserved hypothetical protein [Ricinus communis] gi|223525754|gb|EEF28216.1| conserved hypothetical protein [Ricinus communis] Length = 89 Score = 38.9 bits (90), Expect = 0.57, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 TP+Y + + P F + G + SK+ AEQ+AA V+K Sbjct: 5 TPKYTTIQKE--ELRPVFISSLLFDGKTYTGEVCASKKEAEQLAAMAVIK 52 >gi|326444982|ref|ZP_08219716.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064] Length = 1408 Score = 38.9 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 10/87 (11%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF----RSGPDHDPRFTVVVEI 195 W +R T LQ K V G + V ++ Sbjct: 338 LPVWGERDTVPDFNEM---TALQVLNQLKQKGRITKLVIDPPRLEPGAGYLAA--VTCKV 392 Query: 196 SGLAP-AQGMDCSKRAAEQVAAAEVLK 221 +G A+ +KR A++ AA +L+ Sbjct: 393 AGRNMRAEAAGAAKRLAQRNAAKAMLE 419 >gi|160380524|sp|Q95JV3|ADAD2_MACFA RecName: Full=Adenosine deaminase domain-containing protein 2 Length = 580 Score = 38.9 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 + L E+A + + ++ + GP F+V E+ G+ G SK A+Q AA Sbjct: 115 SLLTEYAASLGIILL-FREDQQPGP--CFPFSVSAELDGVVCPAGTANSKTEAKQQAALS 171 Query: 219 VL 220 L Sbjct: 172 AL 173 >gi|109129347|ref|XP_001112377.1| PREDICTED: adenosine deaminase domain-containing protein 2-like isoform 1 [Macaca mulatta] Length = 562 Score = 38.9 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 + L E+A + + ++ + GP F+V E+ G+ G SK A+Q AA Sbjct: 97 SLLTEYAASLGIILL-FREDQQPGP--CFPFSVSAELDGVVCPAGTANSKTEAKQQAALS 153 Query: 219 VL 220 L Sbjct: 154 AL 155 >gi|109129345|ref|XP_001112441.1| PREDICTED: adenosine deaminase domain-containing protein 2-like isoform 2 [Macaca mulatta] gi|15207991|dbj|BAB63020.1| hypothetical protein [Macaca fascicularis] Length = 580 Score = 38.9 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 + L E+A + + ++ + GP F+V E+ G+ G SK A+Q AA Sbjct: 115 SLLTEYAASLGIILL-FREDQQPGP--CFPFSVSAELDGVVCPAGTANSKTEAKQQAALS 171 Query: 219 VL 220 L Sbjct: 172 AL 173 >gi|306819815|ref|ZP_07453470.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552184|gb|EFM40120.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 136 Score = 38.9 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 11/101 (10%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97 L ++GD + + + + +K +L LV A++ +Q+ ++L I Sbjct: 22 LAYIGDSVWEMYVRNFVIFKNKHSKVNKLHHISTGLVKAKSQAQMVKDLKDNDIIDEKMW 81 Query: 98 ------RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 R S+ A E+LI LY+ Sbjct: 82 DVVLRGRNSASNPPKNADIQDYNYATGFEALIGYLYIIKDF 122 >gi|268532474|ref|XP_002631365.1| C. briggsae CBR-RHA-1 protein [Caenorhabditis briggsae] gi|187036795|emb|CAP23460.1| CBR-RHA-1 protein [Caenorhabditis briggsae AF16] Length = 1402 Score = 38.5 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 5/77 (6%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRA 210 K +D K L W P Y + +F + ++ A G +K+ Sbjct: 101 KMSKDIKEFLYAWLGKNKHPNPVYDTKAET-RGGRQQFKCELRVTSFPYVAFGNSSNKKD 159 Query: 211 AEQVAAAE---VLKREG 224 A AA + L REG Sbjct: 160 AATNAARDFCLFLVREG 176 Score = 38.5 bits (89), Expect = 0.69, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 4/72 (5%) Query: 156 DAKTELQEWAHAKFGVTPEYKV-TFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAA 211 ++K L E+ Y S T + + + +G +K+ + Sbjct: 274 NSKKALNEYTQKMRLPQINYVTKIKESNTVKTMETTAQLYVPQLNKGLTGKGNGSNKKVS 333 Query: 212 EQVAAAEVLKRE 223 E A ++++ Sbjct: 334 EAACAMNIVRQM 345 >gi|241888848|ref|ZP_04776154.1| cysteinyl-tRNA synthetase [Gemella haemolysans ATCC 10379] gi|241864524|gb|EER68900.1| cysteinyl-tRNA synthetase [Gemella haemolysans ATCC 10379] Length = 143 Score = 38.5 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 52/136 (38%), Gaps = 18/136 (13%) Query: 27 LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86 T + ++ Q L ++GD I ++ + + K +L +++VSA + Sbjct: 9 FTEKNFANPNQMQALTLAYIGDSIYDIMSREYVMKNHLG-KINDLHKTVSTIVSARAQAS 67 Query: 87 VARELDLASFIRVSSDL---------RKDVCSFMTSI----QADVVESLIAALYLDGGIE 133 + L + I + + + + SI A +E++ LYL+ E Sbjct: 68 FMENI-LNNSILTEQEEKIYNRAKNQKNNSKAKNASIMEYKLATGLEAVFGYLYLEKNFE 126 Query: 134 VAG---TFVDKYWKQR 146 ++ + ++++ Sbjct: 127 RLEEMFNYIIRLYEEK 142 >gi|307197029|gb|EFN78401.1| 39S ribosomal protein L44, mitochondrial [Harpegnathos saltator] Length = 284 Score = 38.5 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 74/239 (30%), Gaps = 33/239 (13%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI---------------SHSYQESYERLEFLGDRILG 52 KR+ F + LE+A TH + G++++ Sbjct: 37 AFNKRLSENF-DIEKLEQAFTHKVYIFKEEQKQKEIGIEDPKLNIKDNTTFIIKGEKLVS 95 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 ++ + L A E + + L+S E + + + I V Sbjct: 96 EIVQSYLTEALSLAPEDVIISLHDYLLSEEILASASLHIGAKDIILT---EEHPVAQ--- 149 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWA------ 165 AD +L AAL + AG F+ + + + ++ E Sbjct: 150 KTLADTFFALTAALAESVDVNHAGKFIRDFLIVLLAEKDLMEIWNP-SQPCEILDNVLHK 208 Query: 166 HAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + P ++ +G + + + + + G + + A+ VAA VL R Sbjct: 209 QDRSPAEP--RLIGHAGQNTLLASYHIGLYSNKEFLGSGFGQTIQEAKDVAAMNVLSRM 265 >gi|302678397|ref|XP_003028881.1| hypothetical protein SCHCODRAFT_111887 [Schizophyllum commune H4-8] gi|300102570|gb|EFI93978.1| hypothetical protein SCHCODRAFT_111887 [Schizophyllum commune H4-8] Length = 74 Score = 38.5 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 +T+L P Y GP H P + +V + G +G +K Sbjct: 3 HWRTKLHNKVRGNGWQPPVYDF-KAFGPSHAPMWLCIVRLQGAEYGRGDAPTK 54 >gi|260447031|emb|CBG76444.1| OO_Ba0013J05-OO_Ba0033A15.31 [Oryza officinalis] Length = 1333 Score = 38.5 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 8/28 (28%), Positives = 18/28 (64%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVA 215 +F++ V I G +G+ +++AA++ A Sbjct: 728 QFSIEVRILGEKVGEGIGKTRKAAKRQA 755 >gi|222629251|gb|EEE61383.1| hypothetical protein OsJ_15551 [Oryza sativa Japonica Group] Length = 927 Score = 38.5 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 8/28 (28%), Positives = 18/28 (64%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVA 215 +F++ V I G +G+ +++AA++ A Sbjct: 664 QFSIEVRILGEKVGEGIGKTRKAAKRQA 691 >gi|218195257|gb|EEC77684.1| hypothetical protein OsI_16738 [Oryza sativa Indica Group] Length = 905 Score = 38.5 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 8/28 (28%), Positives = 18/28 (64%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVA 215 +F++ V I G +G+ +++AA++ A Sbjct: 664 QFSIEVRILGEKVGEGIGKTRKAAKRQA 691 >gi|215697502|dbj|BAG91496.1| unnamed protein product [Oryza sativa Japonica Group] gi|215706329|dbj|BAG93185.1| unnamed protein product [Oryza sativa Japonica Group] Length = 758 Score = 38.5 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 8/28 (28%), Positives = 18/28 (64%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVA 215 +F++ V I G +G+ +++AA++ A Sbjct: 545 QFSIEVRILGEKVGEGIGKTRKAAKRQA 572 >gi|164662138|ref|XP_001732191.1| hypothetical protein MGL_0784 [Malassezia globosa CBS 7966] gi|159106093|gb|EDP44977.1| hypothetical protein MGL_0784 [Malassezia globosa CBS 7966] Length = 1235 Score = 38.5 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 5/74 (6%) Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS--GPDHDPRFTVVVEISGL--APAQ 202 AL ++ + K + + ++ G PE++ G H + I A Sbjct: 62 ALAKTQWLDNPKNVVFAYVQSRTGSYPEFRFAEGRYHGKSH-KVIRSTLVIDEEYNIVAT 120 Query: 203 GMDCSKRAAEQVAA 216 G S++ AE+ AA Sbjct: 121 GDGKSQKEAEKAAA 134 >gi|116312020|emb|CAJ86376.1| OSIGBa0155K17.3 [Oryza sativa Indica Group] Length = 973 Score = 38.5 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 8/28 (28%), Positives = 18/28 (64%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVA 215 +F++ V I G +G+ +++AA++ A Sbjct: 732 QFSIEVRILGEKVGEGIGKTRKAAKRQA 759 >gi|115459562|ref|NP_001053381.1| Os04g0529500 [Oryza sativa Japonica Group] gi|113564952|dbj|BAF15295.1| Os04g0529500 [Oryza sativa Japonica Group] Length = 779 Score = 38.5 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 8/28 (28%), Positives = 18/28 (64%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVA 215 +F++ V I G +G+ +++AA++ A Sbjct: 566 QFSIEVRILGEKVGEGIGKTRKAAKRQA 593 >gi|38346621|emb|CAD41201.2| OSJNBa0074L08.12 [Oryza sativa Japonica Group] Length = 945 Score = 38.5 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 8/28 (28%), Positives = 18/28 (64%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVA 215 +F++ V I G +G+ +++AA++ A Sbjct: 732 QFSIEVRILGEKVGEGIGKTRKAAKRQA 759 >gi|301117218|ref|XP_002906337.1| double stranded RNA binding, putative [Phytophthora infestans T30-4] gi|262107686|gb|EEY65738.1| double stranded RNA binding, putative [Phytophthora infestans T30-4] Length = 371 Score = 38.5 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 1/62 (1%) Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + F + + L E EY + + H R+ ++I G G Sbjct: 83 QIDDVANFDLNNISTLNELIQKDKKQ-VEYLIQDQGETSHRRRYVCKLQIDGKRMGYGEG 141 Query: 206 CS 207 S Sbjct: 142 VS 143 >gi|126342287|ref|XP_001363000.1| PREDICTED: similar to NF-kappaB repressing factor, [Monodelphis domestica] Length = 680 Score = 38.5 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 5/53 (9%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +T EYK P + + V + G A+G SK+ ++ AA++ LK Sbjct: 350 NKMTIEYK--HEMMP--NRTWRCQVFLQGHCLAEGYG-SKKVSKHAAASKALK 397 >gi|224122146|ref|XP_002330552.1| hypothetical protein POPTRDRAFT_270173 [Populus trichocarpa] gi|222872110|gb|EEF09241.1| hypothetical protein POPTRDRAFT_270173 [Populus trichocarpa] Length = 916 Score = 38.5 bits (89), Expect = 0.69, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 18/42 (42%) Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P P F +E+ + K+ AEQ AA LKR G Sbjct: 36 PQKAPLFRCQLELPEFTVVSDICRKKKDAEQSAADLALKRLG 77 >gi|242075834|ref|XP_002447853.1| hypothetical protein SORBIDRAFT_06g016980 [Sorghum bicolor] gi|241939036|gb|EES12181.1| hypothetical protein SORBIDRAFT_06g016980 [Sorghum bicolor] Length = 1240 Score = 38.5 bits (89), Expect = 0.69, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 11/69 (15%) Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 +D WK+ G + K LQ++ P+Y D +F V + L Sbjct: 360 IDDIWKK-----GDSGKMPKAVLQKFCQKLGWEAPKYNKISER----DGKFVYSVNV--L 408 Query: 199 APAQGMDCS 207 A G S Sbjct: 409 RGATGRGKS 417 >gi|289422429|ref|ZP_06424272.1| ribonuclease III [Peptostreptococcus anaerobius 653-L] gi|289157001|gb|EFD05623.1| ribonuclease III [Peptostreptococcus anaerobius 653-L] Length = 135 Score = 38.5 bits (89), Expect = 0.70, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 14/111 (12%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97 L +LGD + I L K +L VSA S+ + L + Sbjct: 19 LAYLGDTVYESYIREYLIKRNIFLKINDLHKSAIKYVSAHAQSKAIK--GLEDILTEEET 76 Query: 98 ---RVSSDLRKDVCSFMTSI----QADVVESLIAALYLDGGIEVAGTFVDK 141 + + +K+ + S+ A E++I +YL G I+ V++ Sbjct: 77 TIFKRGRNHKKNTAAKNASVIDYRHATGFEAVIGYVYLKGDIDRLDYLVEE 127 >gi|251809947|ref|ZP_04824420.1| ribonuclease III [Staphylococcus epidermidis BCM-HMP0060] gi|251806490|gb|EES59147.1| ribonuclease III [Staphylococcus epidermidis BCM-HMP0060] gi|329734675|gb|EGG70982.1| RNase3 domain protein [Staphylococcus epidermidis VCU028] Length = 132 Score = 38.5 bits (89), Expect = 0.70, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 13/110 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASF----- 96 L ++GD +L + + +K L S VSA++ ++ L + F Sbjct: 15 LAYMGDAVLDQHVREYIVLKL-QSKPHRLHQVSKSYVSAKSQAKTLEYLLGIDWFTEEEL 73 Query: 97 --IRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVD 140 ++ + + + T IQ + +E++I LYLD E ++ Sbjct: 74 SVLKRGRNAKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLLE 123 >gi|321458151|gb|EFX69224.1| maleless-like protein [Daphnia pulex] Length = 1191 Score = 38.5 bits (89), Expect = 0.70, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 10/71 (14%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVT---FRSGPDHDPRFTVVVEISGLA-PAQGMD 205 K RD K L + KF + P Y V +SG + + + G + A G Sbjct: 2 ENKGERDIKEFLYAYLMKKFRIPPVYVVNSMGDQSG------YYCELRVRGFSFVATGRS 55 Query: 206 CSKRAAEQVAA 216 SKR A+ AA Sbjct: 56 SSKRNAQANAA 66 >gi|195435714|ref|XP_002065824.1| GK18621 [Drosophila willistoni] gi|194161909|gb|EDW76810.1| GK18621 [Drosophila willistoni] Length = 297 Score = 38.5 bits (89), Expect = 0.70, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + ++ +P +++ +S + P+F ++ + G+ K+ A Q AA+ +L Sbjct: 102 FCNSHDMPSPIFEMVEKSRNPNAPKFVACCTLASIKR-YGISDKKKEAHQRAASAIL 157 >gi|291001387|ref|XP_002683260.1| predicted protein [Naegleria gruberi] gi|284096889|gb|EFC50516.1| predicted protein [Naegleria gruberi] Length = 369 Score = 38.5 bits (89), Expect = 0.71, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 15/144 (10%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + + LE G N ++ AL + ++L GD L LI+ L Sbjct: 13 PTISATELESIFGLKAHNCD-VKTAL------DPTKAKCKKLALFGDSKLSNLITEKLKP 65 Query: 62 HFDS--AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 D G++S++ T + + ++ + + + V Sbjct: 66 LLDDESIPLGDISMKRERYTMNSTLASYLKYKHEEIYLSILENDIEKREQLNDHSLGTVF 125 Query: 120 ESLIAALYL---DGGIEVAGTFVD 140 E+L YL + IE+ + ++ Sbjct: 126 EALF---YLAPQEKCIEIVNSLIE 146 >gi|319399721|gb|EFV87970.1| RNase3 domain protein [Staphylococcus epidermidis FRI909] Length = 128 Score = 38.5 bits (89), Expect = 0.74, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 13/110 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASF----- 96 L ++GD +L + + +K L S VSA++ ++ LD+ F Sbjct: 11 LAYMGDAVLDQHVREYIVLKL-QSKPHRLHQVSKSYVSAKSQAETLEYLLDIDWFTEEEL 69 Query: 97 --IRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVD 140 ++ + + + T IQ + +E++I LYLD E ++ Sbjct: 70 SVLKRGRNAKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLLE 119 >gi|290985188|ref|XP_002675308.1| predicted protein [Naegleria gruberi] gi|284088903|gb|EFC42564.1| predicted protein [Naegleria gruberi] Length = 599 Score = 38.5 bits (89), Expect = 0.75, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 13/71 (18%) Query: 164 WAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISGLAPA--QGMDCSKRAAEQVAAAE-- 218 W+ + P Y + GP H F +++S L G +K+ A++ A + Sbjct: 517 WSQTFGQNMKPTY-IETCYGPSHITSFRCEIDLSALKLTNQIGDGKTKKEAKKNACTKSC 575 Query: 219 -------VLKR 222 LK+ Sbjct: 576 ISLDQIGALKK 586 >gi|50752008|ref|XP_422612.1| PREDICTED: hypothetical protein [Gallus gallus] Length = 326 Score = 38.5 bits (89), Expect = 0.77, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 49/159 (30%), Gaps = 11/159 (6%) Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 ++ + ++ L + S VA+ L L + Sbjct: 128 RSYLTRSFEAAYPRLPASGVAALVAFLTGRQLVSHVAQNLALPDLALCAQFPAP------ 181 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHA 167 ++ +++ AL G E AG FV + + + F + L E Sbjct: 182 PAVLHATFFAVVGALLGSSGPERAGLFVRDFLIPQLIGKDLFEIWEVVNPMGLLVEELAK 241 Query: 168 KFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMD 205 + PE ++T + G P + V + A+G Sbjct: 242 RNISAPEPRITRQLGVSTVLPLYFVGLYCDKKIIAEGPG 280 >gi|16041086|dbj|BAB69710.1| hypothetical protein [Macaca fascicularis] Length = 345 Score = 38.5 bits (89), Expect = 0.79, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L ++A + V + K T +G P F + G+ G+ +K+ + A Sbjct: 9 NPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNA 67 Query: 216 AAEVLKRE 223 A L Sbjct: 68 AKLALDEL 75 >gi|198426348|ref|XP_002130212.1| PREDICTED: zinc finger protein [Ciona intestinalis] Length = 945 Score = 38.5 bits (89), Expect = 0.80, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 8/94 (8%) Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDA------KTELQEWAHAKFGVTPEYKVTFRSGP 183 + A YWKQ+ L+ K K L W +K P+Y +T Sbjct: 208 SNLSAAYIKQLPYWKQKRLQQVKDPNKPIVATEVKAYLYAWL-SKKKARPDYNITAHGSH 266 Query: 184 DHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAA 216 + + + + G A+G +K+ ++ AA Sbjct: 267 PYRQTYVCEIVVHGYDYVAKGSAGNKKDSQTRAA 300 >gi|92081460|dbj|BAE93277.1| zinc finger protein [Ciona intestinalis] Length = 947 Score = 38.5 bits (89), Expect = 0.80, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 8/94 (8%) Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDA------KTELQEWAHAKFGVTPEYKVTFRSGP 183 + A YWKQ+ L+ K K L W +K P+Y +T Sbjct: 210 SNLSAAYIKQLPYWKQKRLQQVKDPNKPIVATEVKAYLYAWL-SKKKARPDYNITAHGSH 268 Query: 184 DHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAA 216 + + + + G A+G +K+ ++ AA Sbjct: 269 PYRQTYVCEIVVHGYDYVAKGSAGNKKDSQTRAA 302 >gi|308509256|ref|XP_003116811.1| CRE-RHA-1 protein [Caenorhabditis remanei] gi|308241725|gb|EFO85677.1| CRE-RHA-1 protein [Caenorhabditis remanei] Length = 1338 Score = 38.1 bits (88), Expect = 0.80, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 8/74 (10%) Query: 156 DAKTELQEWAHAKFGVTPEYKV------TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 ++K L E+ Y T R+ + ++ +G +K+ Sbjct: 178 NSKKALNEYTQKMKLPQVVYTTKIKEANTVRTMETTAQLYVPQ--LNKTLIGKGSGSNKK 235 Query: 210 AAEQVAAAEVLKRE 223 +E A V+++ Sbjct: 236 VSESGCAMNVVRQM 249 >gi|307104594|gb|EFN52847.1| hypothetical protein CHLNCDRAFT_138311 [Chlorella variabilis] Length = 1640 Score = 38.1 bits (88), Expect = 0.80, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 26/78 (33%), Gaps = 14/78 (17%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSG--------PDHDPR--FTVVVEISGLAPAQGM 204 + K L EW + P Y+ G H + VVV + A Sbjct: 193 KSPKLLLHEWCLREKQPRPRYRAISAEGGLWKCKVVLPHPKQQDKDVVVFLDDSQAA--- 249 Query: 205 DCSKRAAEQVAAAEVLKR 222 S+ AEQ AA L R Sbjct: 250 -PSEDEAEQRAAVAALHR 266 >gi|329729421|gb|EGG65824.1| RNase3 domain protein [Staphylococcus epidermidis VCU144] Length = 132 Score = 38.1 bits (88), Expect = 0.82, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 13/110 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASF----- 96 L ++GD +L + + +K L S VSA++ ++ LD+ F Sbjct: 15 LAYMGDAVLDQHVREYIVLKL-QSKPHRLHQVSKSYVSAKSQAKTLEYLLDIDWFTDEEL 73 Query: 97 --IRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVD 140 ++ + + + T IQ + +E++I LYLD E ++ Sbjct: 74 SVLKRGRNAKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLLE 123 >gi|226359546|ref|YP_002777324.1| ribonuclease [Rhodococcus opacus B4] gi|226238031|dbj|BAH48379.1| putative ribonuclease [Rhodococcus opacus B4] Length = 624 Score = 38.1 bits (88), Expect = 0.82, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 L A PE++ GP H PRFT V ++G Sbjct: 560 LMSLAQNNRQAPPEWE-IRTDGPAHAPRFTATVHLAG 595 >gi|291065626|gb|ADD73902.1| dsRNA binding protein [Banna virus] gi|291065628|gb|ADD73903.1| dsRNA binding protein [Banna virus] Length = 208 Score = 38.1 bits (88), Expect = 0.83, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 167 AKFGVTP-EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 A+ P +K GP HDPR+ + ++ Q D SK+ A Q Sbjct: 12 ARSQGLPLNFKTVGCEGPSHDPRYVIECKLLDFQH-QCTDSSKKRAIQK 59 >gi|324508716|gb|ADY43677.1| Microprocessor complex subunit DGCR8/PASHA [Ascaris suum] Length = 637 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 15/61 (24%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE + ++G D F V G SK+ A+ AA L Sbjct: 353 LQEK-QRREQQL------QQNGEPIDSEFVV--------LGSGCGNSKKTAKLDAARSAL 397 Query: 221 K 221 K Sbjct: 398 K 398 >gi|329738061|gb|EGG74282.1| RNase3 domain protein [Staphylococcus epidermidis VCU045] Length = 128 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 13/110 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASF----- 96 L ++GD +L + + +K L S VSA++ ++ LD+ F Sbjct: 11 LAYMGDAVLDQHVREYIVLKL-QSKPHRLHQVSKSYVSAKSQAKTLEYLLDIDWFTEEEL 69 Query: 97 --IRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVD 140 ++ + + + T IQ + +E++I LYLD E ++ Sbjct: 70 SVLKRGRNAKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLLE 119 >gi|297699339|ref|XP_002826744.1| PREDICTED: adenosine deaminase domain-containing protein 2-like isoform 1 [Pongo abelii] Length = 580 Score = 38.1 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V E+ G+ G SK A+Q AA L Sbjct: 142 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 173 >gi|223972688|ref|NP_631913.3| adenosine deaminase domain-containing protein 2 isoform 1 [Homo sapiens] Length = 665 Score = 38.1 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V E+ G+ G SK A+Q AA L Sbjct: 217 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 248 >gi|260812205|ref|XP_002600811.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae] gi|229286101|gb|EEN56823.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae] Length = 531 Score = 38.1 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 12/80 (15%) Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA--PAQGM-------D 205 K+ Q E +P Y + GP F V + LA Sbjct: 435 KSAPQMLEEMCQKNQWGSPVYSLHSTMGPGERQLFLYKVTVPALASQYPSAQPFQPTKLA 494 Query: 206 CSKRAAEQVAAAEVLKREGI 225 S A+ VAA VL + GI Sbjct: 495 PSVEEAKSVAAEFVLNQLGI 514 >gi|119615897|gb|EAW95491.1| testis nuclear RNA-binding protein-like, isoform CRA_a [Homo sapiens] gi|189054790|dbj|BAG37613.1| unnamed protein product [Homo sapiens] Length = 583 Score = 38.1 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V E+ G+ G SK A+Q AA L Sbjct: 145 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 176 >gi|223972690|ref|NP_001138872.1| adenosine deaminase domain-containing protein 2 isoform 2 [Homo sapiens] gi|74730183|sp|Q8NCV1|ADAD2_HUMAN RecName: Full=Adenosine deaminase domain-containing protein 2; AltName: Full=Testis nuclear RNA-binding protein-like gi|20513942|gb|AAM22869.1|AF447586_1 unknown [Homo sapiens] gi|23273980|gb|AAH33491.1| ADAD2 protein [Homo sapiens] gi|325463397|gb|ADZ15469.1| adenosine deaminase domain containing 2 [synthetic construct] Length = 583 Score = 38.1 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V E+ G+ G SK A+Q AA L Sbjct: 145 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 176 >gi|34526549|dbj|BAC85152.1| FLJ00337 protein [Homo sapiens] Length = 288 Score = 38.1 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V E+ G+ G SK A+Q AA L Sbjct: 82 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 113 >gi|21751785|dbj|BAC04032.1| unnamed protein product [Homo sapiens] gi|119615898|gb|EAW95492.1| testis nuclear RNA-binding protein-like, isoform CRA_b [Homo sapiens] Length = 665 Score = 38.1 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V E+ G+ G SK A+Q AA L Sbjct: 217 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 248 >gi|321450358|gb|EFX62407.1| hypothetical protein DAPPUDRAFT_270469 [Daphnia pulex] Length = 140 Score = 38.1 bits (88), Expect = 0.89, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 38/111 (34%) Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 I AD E+LI AL + V + R ++ G Sbjct: 19 PKIYADSFEALIGALRI-----VCER------EDREIRKGNLI----------------- 50 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 PD + F VV+E+ G S +AA+ AA ++R Sbjct: 51 --------EKKPDGN--FHVVLEVQNTQYFHGSGPSLKAAKTTAAKLGIRR 91 >gi|241950193|ref|XP_002417819.1| 60S ribosomal protein L15, mitochondrial precursor, putative [Candida dubliniensis CD36] gi|223641157|emb|CAX45534.1| 60S ribosomal protein L15, mitochondrial precursor, putative [Candida dubliniensis CD36] Length = 220 Score = 38.1 bits (88), Expect = 0.90, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 61/155 (39%), Gaps = 17/155 (10%) Query: 1 MSALRYSTLEKRIG--YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 ++ + ++ +G Y + + + +TH S + + E+L +G ++L L + Sbjct: 53 LNETNINHIKSFLGDKYNIPD-EIALQVITHKSFGNGIKPYNEKLAAMGSKLLSLYFAKY 111 Query: 59 LFNHFDSAKEG----EL----SVRFNSLVSAETCSQVARELDLASFI----RVSSDLRKD 106 + N + G L S L S +T + A+ ++ + R S+ + Sbjct: 112 VTNQPCKHENGVEGKNLDVLGSPMSRELPSLKTAAIFAKLNNINEIMFWHTRNSTLGFES 171 Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 S +++ SL+ A+ G A F+ + Sbjct: 172 SGELKVS--GELLYSLVGAVNFFHGKNKAEEFITE 204 >gi|154345606|ref|XP_001568740.1| RNA editing complex protein MP61 [Leishmania braziliensis MHOM/BR/75/M2904] gi|134066082|emb|CAM43870.1| RNA editing complex protein MP61 [Leishmania braziliensis MHOM/BR/75/M2904] Length = 598 Score = 38.1 bits (88), Expect = 0.90, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 14/116 (12%) Query: 19 NRSLLEKALTHS---SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK---EGELS 72 +R +L + S SI+ + +ERLEF+GD ++ ++++++ F + +G+L+ Sbjct: 250 DRGILVETFNVSDSQSINSARSWEFERLEFVGDNVVKYILNSVISCTFPPHEGGAKGKLT 309 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 + + ++ LDL ++ ++D+VE+L A L + Sbjct: 310 CFQFVMDGNDGLARGYDHLDLQQL--------ASSVRVVSKFKSDIVETLFAELQM 357 >gi|313218350|emb|CBY41585.1| unnamed protein product [Oikopleura dioica] Length = 165 Score = 38.1 bits (88), Expect = 0.90, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V +E + +G+ +K+ AE AA +LK Sbjct: 44 EFKVTLE-NNGEIFEGIGSNKKKAEHRAAFNLLK 76 >gi|170585520|ref|XP_001897531.1| WW domain containing protein [Brugia malayi] gi|158595078|gb|EDP33653.1| WW domain containing protein [Brugia malayi] Length = 936 Score = 38.1 bits (88), Expect = 0.92, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 18/61 (29%), Gaps = 15/61 (24%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE + G D F V G SK+ A+ AA L Sbjct: 654 LQEK-QRREQRL------QEHGEQPDADFVV--------LGTGCGNSKKTAKLDAARNAL 698 Query: 221 K 221 K Sbjct: 699 K 699 >gi|50261841|gb|AAT72473.1| AT1G01040 [Arabidopsis lyrata subsp. petraea] Length = 179 Score = 38.1 bits (88), Expect = 0.93, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 18/42 (42%) Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 LF + EG+L+ +VS Q A L S+I+ Sbjct: 1 RYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 42 >gi|321468839|gb|EFX79822.1| hypothetical protein DAPPUDRAFT_224986 [Daphnia pulex] Length = 724 Score = 38.1 bits (88), Expect = 0.94, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 13/39 (33%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + + L E P ++ GPDH F V Sbjct: 669 KHPVSILHELCTKHHWEPPVFEQVLDIGPDHLKHFLFKV 707 >gi|226287136|gb|EEH42649.1| RNase III domain-containing protein [Paracoccidioides brasiliensis Pb18] Length = 272 Score = 38.1 bits (88), Expect = 0.96, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 23/131 (17%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFN------------------HFDSAKEG 69 TH S + ERL +LG +I+ L S L S + Sbjct: 129 THKSFDQGRRGFNERLSYLGKQIVQLQASLSLLESASTSSPKQEDPYGRAPFDHPSLQGL 188 Query: 70 E--LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 E N ++ +Q+A + L +R +DL + + + + +++ A+ Sbjct: 189 EVLTQDNKNMKLNRTKIAQLAHQYKLEEVLRWRNDLVESG---LEVVLTQAIYAVVGAVA 245 Query: 128 LDGGIEVAGTF 138 L+ G VA Sbjct: 246 LEKGGVVANQV 256 >gi|195435716|ref|XP_002065825.1| GK18578 [Drosophila willistoni] gi|194161910|gb|EDW76811.1| GK18578 [Drosophila willistoni] Length = 248 Score = 38.1 bits (88), Expect = 0.96, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + P +++ ++ + P+F ++ + G+ K+ A Q AA+ +L Sbjct: 44 FCKSHDMPYPVFEMVEQNRNPNAPKFVACCTLASIKR-YGISDKKKEAHQKAASAIL 99 >gi|290974920|ref|XP_002670192.1| predicted protein [Naegleria gruberi] gi|284083748|gb|EFC37448.1| predicted protein [Naegleria gruberi] Length = 643 Score = 38.1 bits (88), Expect = 0.97, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 3/38 (7%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 EY++ H F VVV+I SK+ A Sbjct: 462 EYEIIDAEPKPH---FQVVVKIGESYITTARGKSKKDA 496 >gi|195998788|ref|XP_002109262.1| hypothetical protein TRIADDRAFT_20896 [Trichoplax adhaerens] gi|190587386|gb|EDV27428.1| hypothetical protein TRIADDRAFT_20896 [Trichoplax adhaerens] Length = 931 Score = 38.1 bits (88), Expect = 0.98, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 9/58 (15%) Query: 160 ELQEWAHAKFGVT-PEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRAA 211 +L + +Y +GPDH +T + I + G +K+ A Sbjct: 22 KLNIYLQKNKLPLNFDYT---SNGPDHLRTYTASMTITIKHLGKVITGSGSGPTKKQA 76 >gi|302678207|ref|XP_003028786.1| hypothetical protein SCHCODRAFT_59760 [Schizophyllum commune H4-8] gi|300102475|gb|EFI93883.1| hypothetical protein SCHCODRAFT_59760 [Schizophyllum commune H4-8] Length = 231 Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 15/165 (9%) Query: 5 RYSTLEKRIGYAFAN----RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + S+ E+ + FA L + +TH S + F+G R+L + L Sbjct: 23 KASSFEEHLNGLFAPLKFPPELARRIMTHGSHPRAVAGHNAGFTFMGRRVLKAYLLLFLS 82 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQ-VARELDLASFIRV----------SSDLRKDVCS 109 + + +L + ++ + V + L + + S Sbjct: 83 SSPNLRPSHDLEAIVDKALNTYLLGEHVGNKWGLGRNMLWQPTVPRERIPGEPVNFVKTS 142 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR 154 + +Q D V +++ ++ G VA R L R Sbjct: 143 GLYKVQGDCVAAILGGIFHQFGGSVAHRVFHTRLLPRLLDDPDVR 187 >gi|156839185|ref|XP_001643286.1| hypothetical protein Kpol_1027p2 [Vanderwaltozyma polyspora DSM 70294] gi|156113890|gb|EDO15428.1| hypothetical protein Kpol_1027p2 [Vanderwaltozyma polyspora DSM 70294] Length = 242 Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 18/137 (13%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL---------------LFNHFDS 65 LL + TH S +H + E+L LG + L L + D+ Sbjct: 77 DLLLQCFTHKSFAHGIKPYNEKLSLLGLQFLKLQAGIYSISQSVNLSPVQAGKIQKQIDN 136 Query: 66 AKEGELSVRFNSL-VSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESL 122 L +F+ L +S + S+ E +L S I ++ + + +I + V+ +L Sbjct: 137 LNFTNLGTQFSKLIISKYSTSKFIIEKNLDSLIFWKMRDPFKAKNYNGDHTINSTVLAAL 196 Query: 123 IAALYLDGGIEVAGTFV 139 I + G F+ Sbjct: 197 IGGILKTNGPAKTANFI 213 >gi|71654841|ref|XP_816032.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70881133|gb|EAN94181.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 2180 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%) Query: 174 EYKVTFRSGPDHDPRFTVVVEIS-----GLAPAQGMDCSKRAAEQVAAAEV 219 ++V G D + V + G A GM C+ + AE +AA Sbjct: 106 VFQVQEVKGNDGSQLYHCRVRLPFQSQTGEVWAHGMACNGKDAEMLAAMHA 156 >gi|329769071|ref|ZP_08260493.1| hypothetical protein HMPREF0433_00257 [Gemella sanguinis M325] gi|328839562|gb|EGF89138.1| hypothetical protein HMPREF0433_00257 [Gemella sanguinis M325] Length = 143 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 20/137 (14%) Query: 27 LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86 T + S+ Q L ++GD I ++ + + K EL + +++VSA + Sbjct: 9 FTEKNFSNPNQMQALTLAYIGDSIYDIMSREYVMKNHLG-KINELHKKVSTIVSARAQAS 67 Query: 87 VARELDLASFIRVSSDLRKDVCS----------FMTSI----QADVVESLIAALYLDGGI 132 + L + I ++ D K SI A +E++ LYL+ Sbjct: 68 FMENM-LENNI-LTEDEEKIYNRAKNQKNNSKAKNASIMEYKLATGLEAVFGYLYLEKNF 125 Query: 133 EVAG---TFVDKYWKQR 146 E ++ K ++++ Sbjct: 126 ERLEEMFNYIIKLYEEK 142 >gi|156360560|ref|XP_001625095.1| predicted protein [Nematostella vectensis] gi|156211911|gb|EDO32995.1| predicted protein [Nematostella vectensis] Length = 778 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 13/85 (15%) Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-- 203 +D K L+ + + EY+V +GP H + V++ + A G Sbjct: 247 EVEHEEHHFKDPKKTLRGYFEREGLDL-EYEV-EETGPGHARVYHCRVKLP-IELANGDP 303 Query: 204 -------MDCSKRAAEQVAAAEVLK 221 KR + A E + Sbjct: 304 MYAEAMVTGK-KRESVLACATEACR 327 >gi|27467211|ref|NP_763848.1| hypothetical protein SE0293 [Staphylococcus epidermidis ATCC 12228] gi|57866116|ref|YP_187767.1| hypothetical protein SERP0171 [Staphylococcus epidermidis RP62A] gi|242241862|ref|ZP_04796307.1| ribonuclease III [Staphylococcus epidermidis W23144] gi|293367906|ref|ZP_06614544.1| cysteine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|27314753|gb|AAO03890.1|AE016744_293 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57636774|gb|AAW53562.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A] gi|242234640|gb|EES36952.1| ribonuclease III [Staphylococcus epidermidis W23144] gi|291317935|gb|EFE58343.1| cysteine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)] Length = 132 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 13/110 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASF----- 96 L ++GD +L + + +K L S VSA++ ++ LD+ F Sbjct: 15 LAYMGDAVLDQHVREYIVLKL-QSKPHRLHQVSKSYVSAKSQAKTLEYLLDIDWFTEEEL 73 Query: 97 --IRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVD 140 ++ + + + T IQ + +E++I LYLD E ++ Sbjct: 74 SVLKRGRNAKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLLE 123 >gi|242025160|ref|XP_002432994.1| ATP-dependent RNA helicase A, putative [Pediculus humanus corporis] gi|212518503|gb|EEB20256.1| ATP-dependent RNA helicase A, putative [Pediculus humanus corporis] Length = 1249 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213 D K+ W K G TP + V +G + RF +++ G + G +K+ A+ Sbjct: 1 MDIKSYFHAWC-IKSGRTPTFDV-RAAGLKNRQRFICELKVDGYSYIGCGNSTNKKDAQF 58 Query: 214 VAAAE 218 AA + Sbjct: 59 NAARD 63 >gi|322822628|gb|EFZ28624.1| hypothetical protein TCSYLVIO_5148 [Trypanosoma cruzi] Length = 1905 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%) Query: 174 EYKVTFRSGPDHDPRFTVVVEIS-----GLAPAQGMDCSKRAAEQVAAAEV 219 ++V G D + V + G A GM C+ + AE +AA Sbjct: 106 VFQVQEVKGNDGSQLYHCRVRLPFQSQTGEVWAHGMACNGKDAEMLAAMHA 156 >gi|168057245|ref|XP_001780626.1| HEN1 protein [Physcomitrella patens subsp. patens] gi|162667894|gb|EDQ54512.1| HEN1 protein [Physcomitrella patens subsp. patens] Length = 951 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 9/20 (45%), Positives = 12/20 (60%) Query: 206 CSKRAAEQVAAAEVLKREGI 225 K+ AEQ AA L++ GI Sbjct: 60 RRKKDAEQDAALHALQKMGI 79 >gi|322505761|emb|CBZ14859.1| RNA editing complex protein MP67 [Leishmania braziliensis MHOM/BR/75/M2904] Length = 575 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 13/101 (12%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF---NSLVSAETCSQ 86 SS E++ERLE +GD L + F + + G + +L S Sbjct: 237 SSERIHRGEAFERLEMVGDSFFKSLTPDRMHAVFPADEGGLTTGLQYFERTLDSNHGLLA 296 Query: 87 VARELDLASFIRVSSDLRKDVCSF-MTSIQADVVESLIAAL 126 + L L I C +ADVVE++I L Sbjct: 297 IYDYLGLDDII---------GCYLANNKAKADVVEAIIGEL 328 >gi|321469017|gb|EFX79999.1| hypothetical protein DAPPUDRAFT_244241 [Daphnia pulex] Length = 109 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 2/89 (2%) Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 IE ++ + D L W K P Y SG F + Sbjct: 8 IENFSQLHEEVLNDEIREPDPLE-DFCEVLNSWLKKKGLAMPYYICVGTSGSGPYLNFIM 66 Query: 192 VVEIS-GLAPAQGMDCSKRAAEQVAAAEV 219 + G A G + + A+ VAAA++ Sbjct: 67 TCQCHHGSDLAIGKGNTVKIAKNVAAAQM 95 >gi|170091244|ref|XP_001876844.1| predicted protein [Laccaria bicolor S238N-H82] gi|164648337|gb|EDR12580.1| predicted protein [Laccaria bicolor S238N-H82] Length = 234 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 47/148 (31%), Gaps = 18/148 (12%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 L + LTH+S + L F+G R+L + L + E +L + Sbjct: 54 ELARRILTHASHQTATNGHNASLSFIGRRVLDSYLHLFLTSSSALTPEHDLENIAYHTLH 113 Query: 81 AETCSQ-VARELDLASFIRV--------------SSDLRKDVCSFMTSIQADVVESLIAA 125 + V + L +R S DLRK +Q D V +++ Sbjct: 114 TYALGEHVGSKWGLGRTLRWVPAIAPEVREQVSDSPDLRKVGLY---KVQGDAVTAVMGG 170 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF 153 ++ G VA L G Sbjct: 171 IFSQFGGSVAHRVFHTRLLPCMLVKGAL 198 >gi|145244913|ref|XP_001394726.1| hypothetical protein ANI_1_2256094 [Aspergillus niger CBS 513.88] gi|134079418|emb|CAK40799.1| unnamed protein product [Aspergillus niger] Length = 228 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P+F + + G+ A G +K+ A+ +AA V R G+ Sbjct: 188 PKFRITISYKGIQ-ASGEGKTKKLAKHIAAKGVCHRLGL 225 >gi|156399642|ref|XP_001638610.1| predicted protein [Nematostella vectensis] gi|156225732|gb|EDO46547.1| predicted protein [Nematostella vectensis] Length = 411 Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 16/81 (19%) Query: 156 DAKTELQEW----AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-------APAQGM 204 D K QE +P Y + GP F V I GL Sbjct: 329 DYKKS-QEILEDVCQKNQWGSPVYTLHSTLGPQEVQLFLYKVSIPGLATQYQPPKLC--- 384 Query: 205 DCSKRAAEQVAAAEVLKREGI 225 + A+ AA L++ GI Sbjct: 385 -RTVEEAKNYAAEHTLQQLGI 404 >gi|308485252|ref|XP_003104825.1| hypothetical protein CRE_23981 [Caenorhabditis remanei] gi|308257523|gb|EFP01476.1| hypothetical protein CRE_23981 [Caenorhabditis remanei] Length = 793 Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 1/56 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 Q + ++ + + E + P + SG DH F V I+ + Sbjct: 702 QNNVPVDLSSKNPISLIMELCAKRRWNAPSFSC-EESGADHMKMFIWTVAINNVEY 756 >gi|88769943|gb|ABD51459.1| H1L [Squirrel poxvirus] Length = 390 Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 2/56 (3%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + + L E+ V + GP H P F V +SG +K+ Sbjct: 316 MNPVSVLAEYCQHTRREWV--FVEQQQGPLHSPTFVAYVTVSGSRFPVERAHTKKE 369 >gi|319937668|ref|ZP_08012071.1| ribonuclease III family protein [Coprobacillus sp. 29_1] gi|319807103|gb|EFW03717.1| ribonuclease III family protein [Coprobacillus sp. 29_1] Length = 130 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 19/118 (16%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97 L +LGD + + + L + K L VSA+ + +E L ++ Sbjct: 11 LAYLGDGVFEVYVREYLIVDQEITKPDLLQKAAIQFVSAKAQAAFMKEAMLHEWVDEDEI 70 Query: 98 ---RVSSDLRKDVCSFMTSI----QADVVESLIAALYLDGG-------IEVAGTFVDK 141 + + + TS+ Q+ E+LI LYL E+ FV + Sbjct: 71 RIYKRGRNAKNTRVMKNTSVITHNQSSGFEALIGHLYLLKKEKRIQEIFELYKEFVMR 128 >gi|68477412|ref|XP_717177.1| possible dsRNA binding protein fragment [Candida albicans SC5314] gi|46438879|gb|EAK98203.1| possible dsRNA binding protein fragment [Candida albicans SC5314] Length = 389 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 TPEY+ + P+ + V+V G+ G D +K+ A Q AA L Sbjct: 331 ATPEYE--DKISPE--KVYHVLVSAKGIYLGGGYDLNKKLAAQKAAMCAL 376 >gi|254966891|gb|ACT97467.1| HGI-1 beta-lactamase [uncultured organism] Length = 295 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 34/106 (32%), Gaps = 21/106 (19%) Query: 97 IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156 I S L + SF S+ V I A YL GG V Q+ L G +D Sbjct: 172 ILASKGLEQSNVSFSDSLLLKVGNIKIEAYYLGGG-HTVDNIVVWIPSQKILFGGCMLKD 230 Query: 157 AKT----------ELQEWAH-----AKFGVTPEYKVTFRSGPDHDP 187 +T L+EW + EY + P H Sbjct: 231 METLNIGNISDAAPLEEWLQTVDRVERQFPNVEYVI-----PGHGK 271 >gi|50306031|ref|XP_452977.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49642110|emb|CAH01828.1| KLLA0C17402p [Kluyveromyces lactis] Length = 241 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 19/140 (13%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRI---------LGLLISTLLFNHFDSAKE--- 68 ++ + LTH S + + ++L +G LGL +S + ++ Sbjct: 75 DIITQCLTHKSFAQGIKPYNQKLSIIGGHFVKYQACLHSLGLPVSERQLSQSVQSEPVIN 134 Query: 69 ----GELSVRFNS-LVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTS-IQADVVES 121 G L + L+S ++ ++ + +L + + D +K + V+ S Sbjct: 135 GLNFGMLGKGSSKMLISKQSTAEFLQRRNLDKLVFWNKRDTQKSHKYNGEYTVLQTVLNS 194 Query: 122 LIAALYLDGGIEVAGTFVDK 141 ++ ++YL G + A +V Sbjct: 195 VVGSVYLLHGQDKATEYVLH 214 >gi|323387830|gb|ADX60058.1| tar RNA binding protein [Procambarus clarkii] Length = 59 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 + LQE + G++P+Y + G H+P F Sbjct: 27 PVSLLQELC-MRRGISPKYDLLQIEGAVHEPTFV 59 >gi|238881365|gb|EEQ45003.1| conserved hypothetical protein [Candida albicans WO-1] Length = 673 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 TPEY+ + P+ + V+V G+ G D +K+ A Q AA L Sbjct: 615 ATPEYE--DKISPE--KVYHVLVSAKGIYLGGGYDLNKKLAAQKAAMCAL 660 >gi|29293900|gb|AAO72963.1| RNA editing complex protein MP61 [Trypanosoma brucei] gi|261332582|emb|CBH15577.1| RNA editing complex protein MP61, putative [Trypanosoma brucei gambiense DAL972] Length = 538 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 10/123 (8%) Query: 11 KRIGY--AF-ANRSLLEKAL-TH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +R+ Y F +R ++ H SS + +ERLE++GD ++ + + F Sbjct: 192 RRLQYLLKFLKDRDVIRDTFNVHNSSGAAGRSWEFERLEWIGDNVVKYVFNDRFNVIFPV 251 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 + G + + +AR ++ + D ++ ++DVVE+L Sbjct: 252 REGGIRGRLGYAQFMIDGNDGLARAY---DYLELQKLTLSD--RVVSKFKSDVVETLFGE 306 Query: 126 LYL 128 L L Sbjct: 307 LQL 309 >gi|68476323|ref|XP_717811.1| hypothetical protein CaO19.5439 [Candida albicans SC5314] gi|68476512|ref|XP_717717.1| hypothetical protein CaO19.12894 [Candida albicans SC5314] gi|46439442|gb|EAK98760.1| hypothetical protein CaO19.12894 [Candida albicans SC5314] gi|46439543|gb|EAK98860.1| hypothetical protein CaO19.5439 [Candida albicans SC5314] Length = 778 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 11/134 (8%) Query: 21 SLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 S + + +H ++ Y + + L+ LGD IL + N + + ++ Sbjct: 611 SFIRLSFSHPFHNNKYPKVNYFKKSLDGLGDAILKRISCEYFMNVSKTDPTFKWNMDDIH 670 Query: 78 LVSAETC-SQVARELDLASFIRVSSDLRKDVCSFMTSI------QADVVESLIAALYLDG 130 ++ ++A L I+ + S+ + E+L++ LYLD Sbjct: 671 FINTNILFGRLAIAYRLHEGIQNEEYSAFIKNRLLGSLDSANVFLGNHFETLVSVLYLDS 730 Query: 131 GIEVAGTFVDKYWK 144 E ++ K + Sbjct: 731 -PETCTKWMFKVYD 743 >gi|16799349|ref|NP_469617.1| hypothetical protein lin0272 [Listeria innocua Clip11262] gi|16412701|emb|CAC95505.1| lin0272 [Listeria innocua Clip11262] gi|313620931|gb|EFR92104.1| ribonuclease III [Listeria innocua FSL S4-378] gi|313625380|gb|EFR95170.1| ribonuclease III [Listeria innocua FSL J1-023] Length = 136 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 13/114 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE-----TCSQVARELDLASFI 97 L ++GD + I L K +L VSA+ + +A Sbjct: 15 LAYMGDAVYEKFIREYLLAAG-KTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTDEED 73 Query: 98 RVSSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVDKYWK 144 R++ R + + E+++ LYL G +E +++K + Sbjct: 74 RIAKRGRNAKSYTIPKNTDPGTYSMSTSFEAVLGYLYLAGDMERLQEWMEKALE 127 >gi|253682273|ref|ZP_04863070.1| RNase3 domain protein [Clostridium botulinum D str. 1873] gi|253561985|gb|EES91437.1| RNase3 domain protein [Clostridium botulinum D str. 1873] Length = 137 Score = 37.7 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 20/117 (17%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 L F+GD I + + L + +L ++ S V A + S++ +E+ I V ++ Sbjct: 23 LAFIGDAIYEVFVRKYLVDEHRDMSAHKLHIKAVSFVKAHSQSELMKEI-----IEVLTE 77 Query: 103 LRKDVCSF---------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + A E+L+ LYL ++ ++ K Sbjct: 78 EECRIFKRGRNAKSGTVPRNADVREYRMATGFEALMGFLYLTNQLDRLNELMNIVIK 134 >gi|68477414|ref|XP_717178.1| possible dsRNA binding protein fragment [Candida albicans SC5314] gi|46438880|gb|EAK98204.1| possible dsRNA binding protein fragment [Candida albicans SC5314] Length = 295 Score = 37.7 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 26/128 (20%) Query: 22 LLEKALTHSSISHS-----------YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 LL + +T S + RL G I+ L + +L + + + Sbjct: 160 LLLRIMTDRSYRQPSDFIESASNDYNKSHNGRLVLRGRAIMQLCLVEVLEESYPRLLDED 219 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL--IAALYL 128 + + L++ ++ A +L ++ + S+ AD E L I ++L Sbjct: 220 IQFISHKLMAPIILTKFAFGYNLVDHLK-----------YNVSVDADYEEKLQIIGNIFL 268 Query: 129 D--GGIEV 134 GG++ Sbjct: 269 AYMGGLKT 276 >gi|68477257|ref|XP_717255.1| possible dsRNA binding protein [Candida albicans SC5314] gi|46438959|gb|EAK98282.1| possible dsRNA binding protein [Candida albicans SC5314] Length = 673 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 TPEY+ + P+ + V+V G+ G D +K+ A Q AA L Sbjct: 615 ATPEYE--DKISPE--KVYHVLVSAKGIYLGGGYDLNKKLAAQKAAMCAL 660 >gi|228475263|ref|ZP_04059988.1| cysteine--tRNA ligase [Staphylococcus hominis SK119] gi|228270728|gb|EEK12137.1| cysteine--tRNA ligase [Staphylococcus hominis SK119] Length = 129 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 13/114 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ-----VAREL---DLA 94 L ++GD +L + + +K L VSA++ +Q + +E + Sbjct: 11 LAYMGDAVLDQHVREYIVLKL-QSKPNRLHQVSKQYVSAKSQAQTLEVLITKEWFTEEER 69 Query: 95 SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWK 144 +R + + + T IQ + +E++I LYLD E +D + Sbjct: 70 DIVRRGRNAKSYTKAKNTDIQTYRKSSGLEAIIGFLYLDHRNERLDALLDMIVQ 123 >gi|119625638|gb|EAX05233.1| testis nuclear RNA-binding protein, isoform CRA_c [Homo sapiens] Length = 578 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 3/86 (3%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH--DPRFTVVVEISG 197 K K+ +K + + + L ++A + V + K T +G + P F + G Sbjct: 80 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGKCNVMGPYFAFCAVVDG 138 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKRE 223 + G+ +K+ + AA L Sbjct: 139 IQYKTGLGQNKKESRSNAAKLALDEL 164 >gi|114599995|ref|XP_001146638.1| PREDICTED: similar to endoribonuclease Dicer [Pan troglodytes] Length = 84 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 7/72 (9%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 S EL E +P + V +E++G +G+ S R Sbjct: 8 SANVPHSPVRELLEMEPETTKFSPAVRTYEEK-------VRVTMEVAGQEKFKGVGRSNR 60 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 61 IAKSAAARRALR 72 >gi|308501339|ref|XP_003112854.1| CRE-RDE-4 protein [Caenorhabditis remanei] gi|308265155|gb|EFP09108.1| CRE-RDE-4 protein [Caenorhabditis remanei] Length = 393 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 15/100 (15%) Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 +D I F + G ++ LQE P Y + Sbjct: 159 VDKSIPTVKEF------PPNVDGG---KNWVGALQEKCQKLKLEGPGYDDCKIE---SNS 206 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK--REGI 225 +F V + +G+ + A+ +AA +LK EGI Sbjct: 207 QFMVTCSMKNQK-TRGIKPKIKHAKNLAAWLMLKSLEEGI 245 >gi|261334844|emb|CBH17838.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 486 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 11/107 (10%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD------SAKEGELSVRFNSLVSA 81 T SS +++R+E +GD G + + F ++ + L Sbjct: 198 TASSGGLQRDAAFQRMECIGDHNWGHSVCRRIVLLFPEVNWRANSNVLVMDALRTVLECN 257 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 + V L L+ ++ +DV +AD+VE++I L++ Sbjct: 258 QHLVHVFTLLQLSD--KLGG---RDVKEKSVKFKADIVEAIIGELHV 299 >gi|148912911|ref|YP_001293225.1| hypothetical protein GTPV_gp030 [Goatpox virus Pellor] Length = 177 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ + + E+ Y G P F V ISG+ + +K+ A+Q Sbjct: 102 EKNPCSAINEYCQFTSRD--WYINISSCGNGRKPMFLASVIISGIKFFPEIGNTKKEAKQ 159 Query: 214 V 214 Sbjct: 160 K 160 >gi|15150473|ref|NP_150468.1| LSDV034 putative PKR inhibitor [Lumpy skin disease virus NI-2490] gi|15149045|gb|AAK84995.1| LSDV034 putative PKR inhibitor [Lumpy skin disease virus NI-2490] gi|22595569|gb|AAN02602.1| putative PKR inhibitor [Lumpy skin disease virus NW-LW] Length = 177 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ + + E+ Y G P F V ISG+ + +K+ A+Q Sbjct: 102 EKNPCSAINEYCQFTSRD--WYINISSCGNGRKPMFLASVIISGIKFFPEIGNTKKEAKQ 159 Query: 214 V 214 Sbjct: 160 K 160 >gi|22595727|gb|AAN02759.1| putative PKR inhibitor [lumpy skin disease virus] Length = 177 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ + + E+ Y G P F V ISG+ + +K+ A+Q Sbjct: 102 EKNPCSAINEYCQFTSRD--WYINISSCGNGRKPMFLASVIISGIKFFPEIGNTKKEAKQ 159 Query: 214 V 214 Sbjct: 160 K 160 >gi|21492487|ref|NP_659606.1| dsRNA-binding PKR inhibitor [Sheeppox virus] Length = 177 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ + + E+ Y G P F V ISG+ + +K+ A+Q Sbjct: 102 EKNPCSAINEYCQFTSRD--WYINISSCGNGRKPMFLASVIISGIKFFPEIGNTKKEAKQ 159 Query: 214 V 214 Sbjct: 160 K 160 >gi|71755999|ref|XP_828914.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70834300|gb|EAN79802.1| hypothetical protein, conserved [Trypanosoma brucei] Length = 486 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 11/107 (10%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD------SAKEGELSVRFNSLVSA 81 T SS +++R+E +GD G + + F ++ + L Sbjct: 198 TASSGGLQRDAAFQRMECIGDHNWGHSVCRRIVLLFPEVNWRANSNVLVMDALRTVLECN 257 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 + V L L+ ++ +DV +AD+VE++I L++ Sbjct: 258 QHLVHVFTLLQLSD--KLGG---RDVKEKSVKFKADIVEAIIGELHV 299 >gi|170043311|ref|XP_001849336.1| ribonuclease iii [Culex quinquefasciatus] gi|167866692|gb|EDS30075.1| ribonuclease iii [Culex quinquefasciatus] Length = 172 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 17/51 (33%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P KV + P + G A S + AE AA + L+ Sbjct: 64 IPICKVIECNSPTSTRVCMMADYFRGKRLACSNGHSTQQAEMNAAKQALEN 114 >gi|330845737|ref|XP_003294729.1| hypothetical protein DICPUDRAFT_93274 [Dictyostelium purpureum] gi|325074759|gb|EGC28750.1| hypothetical protein DICPUDRAFT_93274 [Dictyostelium purpureum] Length = 235 Score = 37.4 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 7/123 (5%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV-SAE 82 ++LT S + ++L + GD L I+ L + F LV S Sbjct: 2 IQSLTQCS-EKQTKADQDKLFYFGDLTLRHSINNPLELSLADK---AIYKEFEELVQSEF 57 Query: 83 TCSQVARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 E+ L+ FIR S ++ + + + + I ALYL+ G +V F+ Sbjct: 58 FLKSRCEEIGLSDFIRFSYPNNWKDYKQIYANNNYYKCLIKFIGALYLEFGFKVTHQFIH 117 Query: 141 KYW 143 + Sbjct: 118 RVI 120 >gi|297799970|ref|XP_002867869.1| hypothetical protein ARALYDRAFT_492795 [Arabidopsis lyrata subsp. lyrata] gi|297313705|gb|EFH44128.1| hypothetical protein ARALYDRAFT_492795 [Arabidopsis lyrata subsp. lyrata] Length = 943 Score = 37.4 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 18/77 (23%) Query: 164 WAHAKFGVTPEYKVTF---------------RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 H KFG Y+V + GP + +++ + + K Sbjct: 14 IIHQKFGAKASYRVEEVNDSSQSGCPGLAIPQKGPC---LYRCHLQLPDFSVVSNVFKKK 70 Query: 209 RAAEQVAAAEVLKREGI 225 + +EQ AA L++ GI Sbjct: 71 KDSEQSAAELALEKLGI 87 >gi|301103430|ref|XP_002900801.1| double stranded RNA binding, putative [Phytophthora infestans T30-4] gi|262101556|gb|EEY59608.1| double stranded RNA binding, putative [Phytophthora infestans T30-4] Length = 306 Score = 37.4 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%) Query: 158 KTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 KT LQE+ + GV+ Y G D F + +G +G+ +K+ A+ Sbjct: 22 KTPAQVLQEYQNRNRGVSINYNTIPVEG-DGIKLFKTIAT-AGSTVGEGVASTKKIAK 77 >gi|115729155|ref|XP_001198817.1| PREDICTED: similar to dynein heavy chain, partial [Strongylocentrotus purpuratus] gi|115893677|ref|XP_781502.2| PREDICTED: similar to dynein heavy chain, partial [Strongylocentrotus purpuratus] Length = 992 Score = 37.4 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 17/87 (19%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLE----------FLGD 48 ++ L +++G + L ++A T S +++ YE LE L D Sbjct: 381 DKIKVKNLLQKLGTTLND--LQKQAFTFKSYQKNFKVEVTKYEELEETHAELKLKQLLWD 438 Query: 49 RI--LGLLISTLLFNHFDSAKEGELSV 73 + ++ + F+ +LS Sbjct: 439 SLDEWDVMTTEWTDADFNDLDPEDLSA 465 >gi|322702818|gb|EFY94442.1| hypothetical protein MAA_10119 [Metarhizium anisopliae ARSEF 23] Length = 251 Score = 37.4 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 23/149 (15%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF----- 75 L A+TH S + ++L LG L + + + + + F Sbjct: 100 ELKWLAVTHKSFDQGRRGFNDKLALLGRLTLVMEATKEIVSKAP-LPGSRQTDEFDRVPF 158 Query: 76 ----------------NSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADV 118 +VS E +A + + +R L K S + + Sbjct: 159 EHEQLASVDNLSVEEPKDMVSKEKLFALASDAGILDVLRWKPRLPKSLESSGVEVVVNSA 218 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRA 147 V +++ A+ L G VA V + R Sbjct: 219 VLAILGAITLQHGSVVASKVVRERILARL 247 >gi|261199119|ref|XP_002625961.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081] gi|239595113|gb|EEQ77694.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081] Length = 405 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 13/65 (20%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK--R---AAEQVA 215 LQE+ P Y + H+ F VE+ G++ +K + A + Sbjct: 61 LQEYCQQNKLDRPIY-----TKYAHEEGFRYEVEVGGVSCF---GANKFYKTATEAIHAS 112 Query: 216 AAEVL 220 A L Sbjct: 113 AHAAL 117 >gi|260946561|ref|XP_002617578.1| hypothetical protein CLUG_03022 [Clavispora lusitaniae ATCC 42720] gi|238849432|gb|EEQ38896.1| hypothetical protein CLUG_03022 [Clavispora lusitaniae ATCC 42720] Length = 211 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 12/128 (9%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL---------SVRF 75 + LTH S ++ + E+L +G ++L L ++ + + E + S Sbjct: 67 QVLTHKSFANGIKPYNEKLSAMGAKVLNLFLAKHVVE-GPTTNELAVAGKNLDVLGSPMA 125 Query: 76 NSLVSAETCSQVARELDLAS--FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 L A+ L S F + + S + A V+ +L+ A+ G + Sbjct: 126 KELSGRMALGVFAQSSKLNSVMFWKSYNSSLSFEKSGELKVSAQVMYALVGAVAFAHGKK 185 Query: 134 VAGTFVDK 141 A F+ + Sbjct: 186 KAEEFIRE 193 >gi|313224320|emb|CBY20109.1| unnamed protein product [Oikopleura dioica] Length = 348 Score = 37.4 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 6/76 (7%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCS 207 +S + ++L E+ + P + G +F + I+ L GM S Sbjct: 121 ESDDNFDNPTSKLFEFVQIRGIEKPVFW-DDMYG----TQFKMTCTIASLKLESFGMCSS 175 Query: 208 KRAAEQVAAAEVLKRE 223 K+ A++ A +L++ Sbjct: 176 KKQAKREACRHMLEKL 191 >gi|300176875|emb|CBK25444.2| unnamed protein product [Blastocystis hominis] Length = 172 Score = 37.4 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 3/77 (3%) Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWA 165 + +D++ES A+L+LDGG+ D+ + ++ L G + + + + E Sbjct: 48 RSKPKLLSDLLESTTASLFLDGGMPKCEELFDRLFGDDVEKRLVDGTLQFEVISAIPEIL 107 Query: 166 HAKFGVTPEYKVTFRSG 182 +A ++T +G Sbjct: 108 NALGAEERLLQITEEAG 124 >gi|281343287|gb|EFB18871.1| hypothetical protein PANDA_013094 [Ailuropoda melanoleuca] Length = 584 Score = 37.4 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 6/90 (6%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAK--FGVTPEYKVTF----RSGPDHDPRFTVVV 193 K K+ +K + + + L ++A + E T SG P F Sbjct: 80 KKIPKEFIMKYKRGEINPVSALHQFAQMQRVHLDLKETVTTGKSKVISGNVMGPYFAFCA 139 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + G+ G+ +K+ + AA L Sbjct: 140 VVDGIQYKTGLGQNKKESRSNAAKLALDEL 169 >gi|325090640|gb|EGC43950.1| conserved hypothetical protein [Ajellomyces capsulatus H88] Length = 101 Score = 37.4 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 6/88 (6%) Query: 8 TLEKRIGYAFANRSLLEKAL-THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +EK GY F N SL KAL T + Q+S L +GD L L + T+ + A Sbjct: 14 EIEKATGYTFTNPSLCLKALQTAGCAAAGGQKS---LAQVGDAALRLALVTIGYGK--GA 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLA 94 G++ + S + E Sbjct: 69 SRGQIDSALRTKASNSHLADQGFERGFD 96 >gi|221120135|ref|XP_002163130.1| PREDICTED: hypothetical protein [Hydra magnipapillata] gi|221136244|ref|XP_002171265.1| PREDICTED: hypothetical protein [Hydra magnipapillata] Length = 179 Score = 37.4 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 9/90 (10%) Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS--GPDHDPRFTVVVEIS 196 + + + K R D + LQ PEYK S G F + Sbjct: 25 IKAAYPLASEKMLAERVDYTSLLQIVCQKVKWNLPEYKECTSSLGG------FGYQCRVG 78 Query: 197 GLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225 ++ + +K+ A+ AA L I Sbjct: 79 LKWYESKEFNSTKKDAKHNAAKWALLELDI 108 >gi|328726844|ref|XP_003249070.1| PREDICTED: double-stranded RNA-specific editase 1-like [Acyrthosiphon pisum] Length = 372 Score = 37.4 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + V +SG G SK+ A+++A LK Sbjct: 149 ISVIVSGNKY-IGYGKSKKEAKEIACRNALK 178 >gi|255723528|ref|XP_002546697.1| predicted protein [Candida tropicalis MYA-3404] gi|240130571|gb|EER30135.1| predicted protein [Candida tropicalis MYA-3404] Length = 829 Score = 37.4 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 8/117 (6%) Query: 46 LGDRILGLLISTLLFNHFDSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDL- 103 LGD IL + + + + + S S++A L I+ Sbjct: 690 LGDAILKKYSAEYFIQLEQIEPQFVWNMDDIHFINSNILFSKLAISYKLHRAIQCEKHAN 749 Query: 104 ----RKDVCSFMTSI-QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 R + ++ D+ E L+A YLD + +V + L + Sbjct: 750 GLRTRLEGSFDRANVLLGDMFERLVAIEYLD-DPDKCRKWVFAIYDSIRLSLTAEHK 805 >gi|324505424|gb|ADY42332.1| Double-stranded RNA-specific editase B2 [Ascaris suum] Length = 863 Score = 37.4 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 PRF + G SK+ A+Q+A LK Sbjct: 150 PRFVCKFSVQGKE-FSADASSKKIAKQLACERALK 183 >gi|302807261|ref|XP_002985343.1| hypothetical protein SELMODRAFT_446247 [Selaginella moellendorffii] gi|300146806|gb|EFJ13473.1| hypothetical protein SELMODRAFT_446247 [Selaginella moellendorffii] Length = 1142 Score = 37.4 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 7/60 (11%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQV 214 D K LQ P Y+ T SG +F V + G G SK+ AE+ Sbjct: 1064 DTKGILQTLVQRAGFAVPTYQ-TRSSG----SQFISCVVVRGKK-FIGEPAESKKQAEKN 1117 >gi|225683515|gb|EEH21799.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03] Length = 322 Score = 37.4 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 21/132 (15%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFN------------------HFDSAKEG 69 TH S + ERL +LG +I+ L S L S + Sbjct: 175 THKSFDQGRRGFNERLSYLGKQIVQLQASLSLLESASTSSPKQEDPYGRAPFDHPSLQGL 234 Query: 70 E--LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAAL 126 E N ++ +Q+A + L +R R D V S + + + +++ A+ Sbjct: 235 EVLTQDNKNMKLNRTKIAQLAHQYKLEEVLRWVPRYRNDLVESGLEVVLTQAIYAVVGAV 294 Query: 127 YLDGGIEVAGTF 138 L+ G VA Sbjct: 295 ALEKGGVVANQV 306 >gi|302795757|ref|XP_002979641.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii] gi|300152401|gb|EFJ19043.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii] Length = 1665 Score = 37.0 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 7/60 (11%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQV 214 D K LQ P Y+ T SG +F V + G G SK+ AE+ Sbjct: 947 DTKGILQTLVQRAGFAVPTYQ-TRSSG----SQFISCVVVRGKK-FIGEPAESKKQAEKN 1000 >gi|313222343|emb|CBY39288.1| unnamed protein product [Oikopleura dioica] Length = 826 Score = 37.0 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 7/75 (9%) Query: 150 SGKFRRDAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 +G DAKT L E KF +++ + D+ F + + + +G Sbjct: 222 TGISTHDAKTPTSHLFE----KFKSGVDFQFSDTIRDDNTGLFVIQLGFTDGVMFEGYGR 277 Query: 207 SKRAAEQVAAAEVLK 221 +K+ A+ A A L+ Sbjct: 278 NKKLAKHHACAVALE 292 >gi|321466229|gb|EFX77226.1| hypothetical protein DAPPUDRAFT_321627 [Daphnia pulex] Length = 199 Score = 37.0 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 1/57 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K + P Y G F + G + R A+ VAA E+L + Sbjct: 137 RKKHLAPIYYCLQVEGTGPSLTFAMSCH-HPKFVTIGEGRTIRMAKNVAAQEMLMKL 192 >gi|313224856|emb|CBY20648.1| unnamed protein product [Oikopleura dioica] Length = 808 Score = 37.0 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 7/75 (9%) Query: 150 SGKFRRDAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 +G DAKT L E KF +++ + D+ F + + + +G Sbjct: 206 TGISTHDAKTPTSHLFE----KFKSGVDFQFSDTIRDDNTGLFVIQLGFTDGVMFEGYGR 261 Query: 207 SKRAAEQVAAAEVLK 221 +K+ A+ A A L+ Sbjct: 262 NKKLAKHHACAVALE 276 >gi|242044684|ref|XP_002460213.1| hypothetical protein SORBIDRAFT_02g024705 [Sorghum bicolor] gi|241923590|gb|EER96734.1| hypothetical protein SORBIDRAFT_02g024705 [Sorghum bicolor] Length = 172 Score = 37.0 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 8/68 (11%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCS-----KRAAE 212 L + P++ GP H+ F V V + GL S K+AA Sbjct: 95 RLLKICKVIGWKEPQFDF-EEQGPQHNKTFKCKVTVHLDGLLNTIMECFSKPNPRKKAAR 153 Query: 213 QVAAAEVL 220 + AA L Sbjct: 154 ENAAQGAL 161 >gi|242372748|ref|ZP_04818322.1| ribonuclease III [Staphylococcus epidermidis M23864:W1] gi|242349521|gb|EES41122.1| ribonuclease III [Staphylococcus epidermidis M23864:W1] Length = 129 Score = 37.0 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 13/114 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94 L ++GD +L I + +K L VSA++ +Q L + Sbjct: 12 LAYMGDAVLDQHIREYIVLKL-QSKPNRLHQVSKQYVSAKSQAQTLERLISDDWFTEEEL 70 Query: 95 SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + ++ + + + T IQ + +E++I LYLD + + Sbjct: 71 NVLKRGRNAKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQQTRLEELLHNIVE 124 >gi|239636928|ref|ZP_04677926.1| cysteinyl-tRNA synthetase [Staphylococcus warneri L37603] gi|239597476|gb|EEQ79975.1| cysteinyl-tRNA synthetase [Staphylococcus warneri L37603] Length = 132 Score = 37.0 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 13/114 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94 L ++GD +L + + S L VSA++ +Q L + Sbjct: 14 LAYMGDAVLDQHVREYIVLKLRSKP-NRLHQMSKLYVSAKSQAQTLETLIGEAWFTEEEM 72 Query: 95 SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWK 144 ++ + + + T +Q + +E++I LYL+ E ++K + Sbjct: 73 DILKRGRNAKSYTKAKNTDVQTYRKSSALEAVIGFLYLEHREERLKALLNKIIE 126 >gi|149511238|ref|XP_001519380.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 268 Score = 37.0 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 106 KIFYVQLTVGNDEFF-GEGKTRQAARHNAAMKALRAL 141 >gi|313243436|emb|CBY42194.1| unnamed protein product [Oikopleura dioica] Length = 723 Score = 37.0 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 14/34 (41%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + V A G +K+ A+ AA+ L+ Sbjct: 502 TWEATVSFDKTKIADGHGKTKKDAKADAASNALR 535 >gi|313231812|emb|CBY08924.1| unnamed protein product [Oikopleura dioica] Length = 672 Score = 37.0 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 14/34 (41%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + V A G +K+ A+ AA+ L+ Sbjct: 451 TWEATVSFDKTKIADGHGKTKKDAKADAASNALR 484 >gi|297742898|emb|CBI35689.3| unnamed protein product [Vitis vinifera] Length = 160 Score = 37.0 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 13/30 (43%) Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 VEI G +G + A+ AA + L Sbjct: 78 AQVEIDGQVLGKGTGSTWDDAKMQAAEKAL 107 >gi|311273132|ref|XP_001926172.2| PREDICTED: 39S ribosomal protein L44, mitochondrial-like [Sus scrofa] Length = 118 Score = 37.0 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 1/89 (1%) Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVE 194 F+ + L + L E + PE ++T +SG P + V + Sbjct: 2 QDFLITQMTGKELFEMWTITNPMGLLVEELKKRKISAPESRLTRQSGSTTALPVYFVGLY 61 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 A+G + AE+ AA L++ Sbjct: 62 CDRKLIAEGPGETVLVAEEEAARVALRKL 90 >gi|317156819|ref|XP_001826034.2| hypothetical protein AOR_1_658054 [Aspergillus oryzae RIB40] Length = 216 Score = 37.0 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%) Query: 150 SGKFRRDAK-T-ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 G + K T L E A KVT + RF + ++ G+ A G + Sbjct: 139 PGSEADNWKYTCRLWEDAQGTGEEP---KVTEACISNFPTRFRITIQYCGVE-ASGEGRN 194 Query: 208 KRAAEQVAAAEVLKREGI 225 K+ A +AA V +R + Sbjct: 195 KKTARHLAARRVCERLNL 212 >gi|238492893|ref|XP_002377683.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] gi|220696177|gb|EED52519.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] Length = 247 Score = 37.0 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%) Query: 150 SGKFRRDAK-T-ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 G + K T L E A KVT + RF + ++ G+ A G + Sbjct: 170 PGSEADNWKYTCRLWEDAQGTGEEP---KVTEACISNFPTRFRITIQYCGVE-ASGEGRN 225 Query: 208 KRAAEQVAAAEVLKREGI 225 K+ A +AA V +R + Sbjct: 226 KKTARHLAARRVCERLNL 243 >gi|83774778|dbj|BAE64901.1| unnamed protein product [Aspergillus oryzae] Length = 250 Score = 37.0 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%) Query: 150 SGKFRRDAK-T-ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 G + K T L E A KVT + RF + ++ G+ A G + Sbjct: 170 PGSEADNWKYTCRLWEDAQGTGEEP---KVTEACISNFPTRFRITIQYCGVE-ASGEGRN 225 Query: 208 KRAAEQVAAAEVLKREGI 225 K+ A +AA V +R + Sbjct: 226 KKTARHLAARRVCERLNL 243 >gi|71747466|ref|XP_822788.1| RNA editing complex protein MP61 [Trypanosoma brucei TREU927] gi|70832456|gb|EAN77960.1| RNA editing complex protein MP61 [Trypanosoma brucei] Length = 538 Score = 37.0 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 10/123 (8%) Query: 11 KRIGY--AF-ANRSLLEKAL-TH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +R+ Y F +R ++ H SS + +ERLE++GD ++ + + F Sbjct: 192 RRLQYLLKFLKDRDVIRDTFNVHNSSGTAGRSWEFERLEWIGDNVVKYVFNDRFNVIFPV 251 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 + G + + +AR ++ + D ++ ++DVVE+L Sbjct: 252 REGGIRGRLGYAQFMIDGNDGLARAY---DYLELQKLTLSD--RVVSKFKSDVVETLFGE 306 Query: 126 LYL 128 L L Sbjct: 307 LQL 309 >gi|168187714|ref|ZP_02622349.1| ribonuclease III family protein [Clostridium botulinum C str. Eklund] gi|169294419|gb|EDS76552.1| ribonuclease III family protein [Clostridium botulinum C str. Eklund] Length = 137 Score = 37.0 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 10/108 (9%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD---LASFIRV 99 L F+GD I + + L + +L V+ S V A + S++ +E+ R+ Sbjct: 23 LAFVGDAIYEVFVRQYLVEQNNDMSAHKLHVKAVSYVKAHSQSEIMKEIKEILTDEEERI 82 Query: 100 SSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVD 140 R + A E+L+ LYL ++ ++ Sbjct: 83 FKRGRNAKSGTVPKNADVREYRIATGFEALMGFLYLTNQLDRLNELMN 130 >gi|302849039|ref|XP_002956050.1| hypothetical protein VOLCADRAFT_96996 [Volvox carteri f. nagariensis] gi|300258555|gb|EFJ42790.1| hypothetical protein VOLCADRAFT_96996 [Volvox carteri f. nagariensis] Length = 1239 Score = 37.0 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 14/77 (18%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRS---GPDHDPRFTVVVEI--SG-----LAPAQGMDC 206 KT L ++ Y+VT GP +TV + G +A A G Sbjct: 617 PKTPL--MILHEYASKMSYEVTNHETSDGPSGP--YTVETRMLSGGNRGTTIATASGKAR 672 Query: 207 SKRAAEQVAAAEVLKRE 223 +K+ A+QV+AA VL++ Sbjct: 673 TKKDAKQVSAAAVLEKL 689 >gi|256844497|ref|ZP_05549983.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256613575|gb|EEU18778.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] Length = 147 Score = 37.0 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 14/137 (10%) Query: 34 HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 + + + L +LGD + L+I L K L VSA+ + +A ++ Sbjct: 13 NPDTLNGQTLAYLGDAVYELIIRRHLV-KGGIVKPQVLQREATHYVSAKAQAALATKMQD 71 Query: 94 ASFI--------RVSSDLRKDVCSFMTSI----QADVVESLIAALYLDGGIEVAGTFVDK 141 + R + + + TS+ + E++I L L G + + K Sbjct: 72 EEMLTDDELAAFRRGRNAKSHTKAKNTSLKTYQLSTGFEAMIGYLDLLGKNDRVAD-LSK 130 Query: 142 YWKQRALKSGKFRRDAK 158 + + G D K Sbjct: 131 WCIDTVEEDGLKNYDFK 147 >gi|295087382|emb|CBK68905.1| TIR domain. [Bacteroides xylanisolvens XB1A] Length = 655 Score = 36.6 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 19/107 (17%) Query: 82 ETCSQVAREL--DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL------YLDGGIE 133 + S + +E+ ++ + I + + A + E I A+ YL GG Sbjct: 506 NSLSIMRKEMEENVNARIVLGGKIVNFKGR-----MAGIFEEAICAIQKKHPIYLLGGFG 560 Query: 134 VAGTFVDKYWK-----QRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 A + K K ++ + K D K +L E+ T Y Sbjct: 561 GASAQIVKLMKGETTAEKLFEEAKTNEDYK-KLIEYCQMSCLPTINY 606 >gi|154249387|ref|YP_001410212.1| ribonuclease III [Fervidobacterium nodosum Rt17-B1] gi|154153323|gb|ABS60555.1| ribonuclease III [Fervidobacterium nodosum Rt17-B1] Length = 127 Score = 36.6 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 13/104 (12%) Query: 34 HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL-- 91 + + S + L +LGD + L + K +L R N VS + S++ + + Sbjct: 10 NPDEMSIDSLAYLGDAVFNLYAKLYILA---DVKVTDLHRRSNKYVSRQGQSKLLKSISH 66 Query: 92 -------DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 ++ S RK + +++ E+LI LYL Sbjct: 67 LLDEKEKNVVQRGINSKGARKH-GNDRLYMESTGFEALIGYLYL 109 >gi|330797669|ref|XP_003286881.1| hypothetical protein DICPUDRAFT_150900 [Dictyostelium purpureum] gi|325083116|gb|EGC36577.1| hypothetical protein DICPUDRAFT_150900 [Dictyostelium purpureum] Length = 790 Score = 36.6 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 20/66 (30%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 K LQ + PE++ GPDH F R +E+ Sbjct: 7 HYKGLLQTHFQKARLIYPEFR-NETRGPDHQKEF-------------------RKSEEEC 46 Query: 216 AAEVLK 221 A + ++ Sbjct: 47 AKKTME 52 >gi|314937164|ref|ZP_07844511.1| cysteine--tRNA ligase [Staphylococcus hominis subsp. hominis C80] gi|313655783|gb|EFS19528.1| cysteine--tRNA ligase [Staphylococcus hominis subsp. hominis C80] Length = 129 Score = 36.6 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 13/114 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94 L ++GD +L + + +K L VSA++ +Q L + Sbjct: 11 LAYMGDAVLDQHVREYIVLKL-QSKPNRLHQVSKQYVSAKSQAQTLEVLITKKWFTEEER 69 Query: 95 SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWK 144 +R + + + T +Q + +E++I LYLD E +D + Sbjct: 70 DIVRRGRNAKSYTKAKNTDVQTYRKSSGLEAIIGFLYLDHRNERLDALLDMIVQ 123 >gi|111025588|ref|YP_708008.1| hypothetical protein RHA1_ro08806 [Rhodococcus jostii RHA1] gi|110824567|gb|ABG99850.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 150 Score = 36.6 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 19/52 (36%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 W A P R+G DH+P F + +K+ AEQ A Sbjct: 43 WRQAHPDQPPTDLEIRRNGADHNPLFAARATHLNIRGPWATAAAKKPAEQAA 94 >gi|47213373|emb|CAF90992.1| unnamed protein product [Tetraodon nigroviridis] Length = 611 Score = 36.6 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 15/79 (18%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-------SGLAPAQGMDCSK----- 208 L+E P Y++ GPD F + I + P +K Sbjct: 465 LEELCQKNNWGQPVYQLHSAIGPDQRQLFLYKITIPALATQYPNVHPFT---PTKLCAAV 521 Query: 209 RAAEQVAAAEVLKREGIWT 227 A+ AA L+ G+ T Sbjct: 522 EEAKVHAAEHTLQTLGLLT 540 >gi|308198005|ref|XP_001386774.2| predicted protein [Scheffersomyces stipitis CBS 6054] gi|149388810|gb|EAZ62751.2| predicted protein [Pichia stipitis CBS 6054] Length = 541 Score = 36.6 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 S S S + E L+ LG ++ I+ + F++ + + + L S S+ R Sbjct: 241 KSCSESISKKSENLQALGQSVMSASIAYVFEKSFEAVNDTSVEYLRSKLNSETFLSRFFR 300 Query: 90 ELD 92 ELD Sbjct: 301 ELD 303 >gi|327293622|ref|XP_003231507.1| 60S ribosomal protein L3 [Trichophyton rubrum CBS 118892] gi|326466135|gb|EGD91588.1| 60S ribosomal protein L3 [Trichophyton rubrum CBS 118892] Length = 375 Score = 36.6 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 25/73 (34%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L + L +S S Q + LG+ +L + L + L + + + Sbjct: 94 LARTLIDASADTSTQFNNHSFSVLGNDLLSYYTTEHLITQYPRLPMSVLWTAMYAYIGPK 153 Query: 83 TCSQVARELDLAS 95 + +A E + Sbjct: 154 ALAVMANEWGVEH 166 >gi|224097989|ref|XP_002191539.1| PREDICTED: transcription factor NRF [Taeniopygia guttata] Length = 720 Score = 36.6 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + + V + A+G +K+ ++ AA E LK Sbjct: 402 NRSWRCQVYLQDHCLAEGFG-TKKTSKHAAAEEALK 436 >gi|331268392|ref|YP_004394884.1| RNase3 domain-containing protein [Clostridium botulinum BKT015925] gi|329124942|gb|AEB74887.1| RNase3 domain protein [Clostridium botulinum BKT015925] Length = 137 Score = 36.6 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 18/112 (16%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 L F+GD I + + T L + +L V+ S V A + S++ +E+ ++ + Sbjct: 23 LAFIGDAIYEVFVRTYLVDEHRDMSAHKLHVKAVSFVKAHSQSELMKEM----MDILTEE 78 Query: 103 LRKDVCSFM--------------TSIQADVVESLIAALYLDGGIEVAGTFVD 140 + A E+L+ LYL +E ++ Sbjct: 79 ECRIFKRGRNAKSGTVPKNADVTEYRMATGFEALMGFLYLTNQLERLNELMN 130 >gi|322821482|gb|EFZ27794.1| hypothetical protein TCSYLVIO_5988 [Trypanosoma cruzi] Length = 1702 Score = 36.6 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 5/41 (12%) Query: 184 DHDPRFTVVVEIS-----GLAPAQGMDCSKRAAEQVAAAEV 219 D + F V + G +G+ +++ AE VAA Sbjct: 110 DEEKLFHARVRVPLPPEYGERWGEGLASTEKEAELVAAMHA 150 >gi|313227860|emb|CBY23009.1| unnamed protein product [Oikopleura dioica] Length = 495 Score = 36.6 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 5/72 (6%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + + + LQE P Y+ G D +F + S + D S+ Sbjct: 285 ATDYANNPINVLQETLQKDGLPCPVYET--HRGKDG--KFEAICRASSEE-TRAFDQSEN 339 Query: 210 AAEQVAAAEVLK 221 A++ AA +++K Sbjct: 340 EAKRKAAHQMMK 351 >gi|313216318|emb|CBY37647.1| unnamed protein product [Oikopleura dioica] Length = 495 Score = 36.6 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 5/72 (6%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + + + LQE P Y+ G D +F + S + D S+ Sbjct: 285 ATDYANNPINVLQETLQKDGLPCPVYET--HRGKDG--KFEAICRASSEE-TRAFDQSEN 339 Query: 210 AAEQVAAAEVLK 221 A++ AA +++K Sbjct: 340 EAKRKAAHQMMK 351 >gi|225682177|gb|EEH20461.1| predicted protein [Paracoccidioides brasiliensis Pb03] Length = 123 Score = 36.6 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 4/94 (4%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ + +E IGY+F N +L +AL +S+ + ++L GD + L ++ F + Sbjct: 14 VKVNAIESTIGYSFTNSNLCLEALWIASLITGEGD--KKLAQAGDDAVKLALAVSGFEN- 70 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G++S ++ S E++L + Sbjct: 71 -GYSRGQISEITSATASNRHLGYKGFEIELQEHM 103 >gi|71655009|ref|XP_816114.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70881219|gb|EAN94263.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 1732 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 5/41 (12%) Query: 184 DHDPRFTVVVEIS-----GLAPAQGMDCSKRAAEQVAAAEV 219 D + F V + G +G+ +++ AE VAA Sbjct: 140 DEEKLFHARVRVPLPPEYGERWGEGLASTEKEAELVAAMHA 180 >gi|239609779|gb|EEQ86766.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3] gi|327353837|gb|EGE82694.1| hypothetical protein BDDG_05638 [Ajellomyces dermatitidis ATCC 18188] Length = 769 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 13/65 (20%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK--R---AAEQVA 215 LQE+ P Y + H+ F VE+ G++ +K + A + Sbjct: 341 LQEYCQQNKLDRPIY-----TKYAHEEGFWYEVEVGGVSCF---GANKFYKTATEAIHAS 392 Query: 216 AAEVL 220 A L Sbjct: 393 AHAAL 397 >gi|330686232|gb|EGG97844.1| RNase3 domain protein [Staphylococcus epidermidis VCU121] Length = 132 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 13/114 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94 L ++GD +L + + S L VSA++ +Q L + Sbjct: 14 LAYMGDAVLDQHVRKYIVLKLRSKP-NRLHQMSKLYVSAKSQAQTLETLIEEPWFTEEEM 72 Query: 95 SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWK 144 ++ + + + T +Q + +E++I LYL+ E +DK + Sbjct: 73 DILKRGRNAKSYTKAKNTDVQTYRKSSALEAVIGFLYLEHREERLKVLLDKIIE 126 >gi|328715219|ref|XP_003245565.1| PREDICTED: hypothetical protein LOC100573606 [Acyrthosiphon pisum] Length = 339 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 6/79 (7%) Query: 145 QRALKSGKFRRDAKT--ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 + KF D K +Q K G + + P F V VEI + Sbjct: 247 PKVGPMKKFPEDPKNCNPVQLINQMKPGAKFIETIISLNRPS---VFNVKVEIDNIT-FT 302 Query: 203 GMDCSKRAAEQVAAAEVLK 221 G+ SK+AA++ E +K Sbjct: 303 GLGSSKKAAKRECCIEAIK 321 >gi|111025555|ref|YP_707975.1| exoribonuclease R [Rhodococcus jostii RHA1] gi|110824534|gb|ABG99817.1| exoribonuclease R [Rhodococcus jostii RHA1] Length = 625 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 L A PE++ GP H PRFT V ++G Sbjct: 561 LMSLAQNNHQAPPEWEF-HIDGPAHAPRFTATVHLAG 596 Score = 34.7 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 20/52 (38%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 W + P R+G DH P F G+ + +K+ AEQ A Sbjct: 435 WRQSHPDQPPTDLEIRRNGSDHHPLFAARATHLGVRGPWAIAAAKKPAEQAA 486 >gi|119480957|ref|XP_001260507.1| hypothetical protein NFIA_085650 [Neosartorya fischeri NRRL 181] gi|119408661|gb|EAW18610.1| conserved hypothetical protein [Neosartorya fischeri NRRL 181] Length = 323 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 6/54 (11%) Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK-----TELQEWAHAKFGVTP 173 A YL GG + + + Q GK + K TELQEW + P Sbjct: 15 ATYL-GGTDKEIHELRRVLTQLMSAHGKLDKGYKSKAARTELQEWIQSNLHRLP 67 >gi|71001354|ref|XP_755358.1| conserved hypothetical protein [Aspergillus fumigatus Af293] gi|66852996|gb|EAL93320.1| conserved hypothetical protein [Aspergillus fumigatus Af293] gi|159129433|gb|EDP54547.1| conserved hypothetical protein [Aspergillus fumigatus A1163] Length = 316 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 6/54 (11%) Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK-----TELQEWAHAKFGVTP 173 A YL GG + + + Q GK + K TELQEW + P Sbjct: 15 ATYL-GGTDKEIHELRRVLTQLMSAHGKLDKGYKSKAARTELQEWIQSNLHRLP 67 >gi|111025367|ref|YP_707787.1| exoribonuclease II [Rhodococcus jostii RHA1] gi|110824346|gb|ABG99629.1| probable exoribonuclease II [Rhodococcus jostii RHA1] Length = 666 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 19/52 (36%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 W A P R+G DH+P F + +K+ AEQ A Sbjct: 436 WRQAHPDQPPTDLEIRRNGADHNPLFAARATHRSIRGPWATAAAKKPAEQAA 487 >gi|255527267|ref|ZP_05394148.1| ribonuclease III [Clostridium carboxidivorans P7] gi|296187246|ref|ZP_06855642.1| RNase3 domain protein [Clostridium carboxidivorans P7] gi|255509052|gb|EET85411.1| ribonuclease III [Clostridium carboxidivorans P7] gi|296048117|gb|EFG87555.1| RNase3 domain protein [Clostridium carboxidivorans P7] Length = 141 Score = 36.2 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 18/100 (18%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 L F+GD + + + T L + L V+ V A S+ ++++ +S + Sbjct: 23 LAFVGDAVYEVFVRTYLVDKNRDMSVHNLHVKAIKFVKAHAQSEFIKKIEKE----LSEE 78 Query: 103 LRKDVCSFMTSI--------------QADVVESLIAALYL 128 S A E+LI LYL Sbjct: 79 EMYFFKRGRNSKSGTVPKNADVQEYRFATGFETLIGYLYL 118 >gi|321463658|gb|EFX74672.1| hypothetical protein DAPPUDRAFT_324075 [Daphnia pulex] Length = 119 Score = 36.2 bits (83), Expect = 3.8, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRI 50 R LE+ + Y F +++LL +AL ++ +Y + GD Sbjct: 35 RLEKLEEILNYEFHSKNLLLEALI---LNEDKNSNYNKDTCQGDSW 77 >gi|321458641|gb|EFX69706.1| hypothetical protein DAPPUDRAFT_300841 [Daphnia pulex] Length = 459 Score = 36.2 bits (83), Expect = 3.8, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 7/59 (11%) Query: 157 AKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQ 213 KT L E+ A+ P Y D F V + G A + ++ +KR++EQ Sbjct: 380 PKTVLHEYACKAQHSKLPLYHSEQV-----DKLFFSTVVVEGQRYANRYLEKNKRSSEQ 433 >gi|255576211|ref|XP_002528999.1| ATP-dependent RNA helicase, putative [Ricinus communis] gi|223531539|gb|EEF33369.1| ATP-dependent RNA helicase, putative [Ricinus communis] Length = 1509 Score = 36.2 bits (83), Expect = 3.8, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGMDC 206 K G ++ K L + P++K H+ R F+ V I L A G Sbjct: 403 KKGDPKKIPKAVLHQLCQKSGWEAPKFKKV------HERRKGFSYSVSI--LRKASGRGK 454 Query: 207 SKRA 210 S++A Sbjct: 455 SRKA 458 >gi|313219943|emb|CBY43644.1| unnamed protein product [Oikopleura dioica] Length = 813 Score = 36.2 bits (83), Expect = 4.0, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 155 RDAKTELQEWA-HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAE 212 D K L W + +YK G H F+ ++ISGL A SK+ A+ Sbjct: 117 NDIKGYLHIWCNQRRVTPEFDYK---ELGNRHKKLFSCSIQISGLDFVAIKEARSKKEAQ 173 Query: 213 QVA 215 A Sbjct: 174 NEA 176 >gi|256840310|ref|ZP_05545818.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|265753907|ref|ZP_06089262.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|256737582|gb|EEU50908.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|263235621|gb|EEZ21145.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 655 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 19/107 (17%) Query: 82 ETCSQVAREL--DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL------YLDGGIE 133 + S + +E+ ++ + I + + A + E I A+ YL GG Sbjct: 506 NSLSIMRKEMEENVNARIVLGGKIVNFKGR-----MAGIFEEAICAIQKKHPIYLLGGFG 560 Query: 134 VAGTFVDKYWK-----QRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 A + K K ++ + K D K L E+ T Y Sbjct: 561 GASAQIVKLMKGETTAEKLFEEAKTNEDYKN-LIEYCQMSCLPTINY 606 >gi|312095309|ref|XP_003148313.1| hypothetical protein LOAG_12753 [Loa loa] gi|307756522|gb|EFO15756.1| hypothetical protein LOAG_12753 [Loa loa] Length = 265 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 8/24 (33%), Positives = 11/24 (45%) Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221 + G SK+ A+ AA LK Sbjct: 4 VVLGTGCGNSKKTAKLDAARNALK 27 >gi|328708018|ref|XP_003243573.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A-like [Acyrthosiphon pisum] Length = 268 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + + LQE A+ P+Y + H+P F VV IS + G D + Sbjct: 65 RVELNPINALQELCVARHFSFPKYTFYVNNIMTHNPTFNVVCSIS-IYVTSGTDST 119 >gi|302689897|ref|XP_003034628.1| hypothetical protein SCHCODRAFT_107278 [Schizophyllum commune H4-8] gi|300108323|gb|EFI99725.1| hypothetical protein SCHCODRAFT_107278 [Schizophyllum commune H4-8] Length = 227 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 1/46 (2%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + G ++ GP H P +T + G + SK+ Sbjct: 134 YIQQLTGTPFRFE-DKSHGPPHQPIWTSQLYFGGKLVGESQHSSKK 178 >gi|281204178|gb|EFA78374.1| protoporphyrinogen oxidase [Polysphondylium pallidum PN500] Length = 540 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 7/85 (8%) Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161 L D + S+ +S + DGG+++ + K +R L T + Sbjct: 233 SLDHDSVRRVKSMLNKDNDSTRIFSFKDGGLQMLTDKLTKSIPERKLYMN-------THI 285 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHD 186 Q + TP Y++ G +H+ Sbjct: 286 QSIERSDKNGTPVYRLVDSHGNEHE 310 >gi|194764847|ref|XP_001964539.1| GF22997 [Drosophila ananassae] gi|190614811|gb|EDV30335.1| GF22997 [Drosophila ananassae] Length = 453 Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 7/30 (23%), Positives = 13/30 (43%) Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V ++ A G + + A+Q A + L Sbjct: 220 AEVLVNDQVIATGQGENLKVAKQAAFKQAL 249 >gi|317156825|ref|XP_003190772.1| hypothetical protein AOR_1_664054 [Aspergillus oryzae RIB40] Length = 508 Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 13/123 (10%) Query: 44 EFLGDRILGLL-ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS- 101 E+LGD + L+ + + G+++ L + VA+ + I +S Sbjct: 36 EWLGDLGIDLIRLCLSFHAYQTRIPPGDIAAGKEKLCTYAHLVSVAQRTAIDRMIPYNSP 95 Query: 102 -DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKT 159 + + T + ++IAA +LD G T+ + +Y D T Sbjct: 96 PGEERHITVGRT------MAAIIAAAHLDCGGSYRRTWQILEYIG--FFTQEDNGVDP-T 146 Query: 160 ELQ 162 LQ Sbjct: 147 RLQ 149 >gi|313224938|emb|CBY20730.1| unnamed protein product [Oikopleura dioica] Length = 686 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 3/62 (4%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L E+ + + + + ++++V + G A K+ A++ A L Sbjct: 216 LNEFCQFQRKSL---RFEDVAAKESYKNYSILVVVDGFEYAPAEAWKKKLAKEAACRNAL 272 Query: 221 KR 222 KR Sbjct: 273 KR 274 >gi|322712215|gb|EFZ03788.1| hypothetical protein MAA_00862 [Metarhizium anisopliae ARSEF 23] Length = 106 Score = 35.8 bits (82), Expect = 4.6, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 8/67 (11%) Query: 4 LRYSTLEKRIGYAFANRSLLEKAL------THSSISHSYQE--SYERLEFLGDRILGLLI 55 + E+ GY F + L +AL T H+ ++ +RL GD + ++ Sbjct: 9 EKIKRCEEATGYVFVKKELCAEALNASADGTACYYGHTLKQLRKNDRLAVYGDTVADSVL 68 Query: 56 STLLFNH 62 + Sbjct: 69 CHRWYKQ 75 >gi|15926208|ref|NP_373741.1| hypothetical protein SA0489 [Staphylococcus aureus subsp. aureus N315] gi|21282215|ref|NP_645303.1| hypothetical protein MW0486 [Staphylococcus aureus subsp. aureus MW2] gi|49485395|ref|YP_042616.1| hypothetical protein SAS0488 [Staphylococcus aureus subsp. aureus MSSA476] gi|57634655|ref|YP_182412.1| hypothetical protein SAV0530.1 [Staphylococcus aureus subsp. aureus Mu50] gi|57651407|ref|YP_185463.1| hypothetical protein SACOL0577 [Staphylococcus aureus subsp. aureus COL] gi|87161610|ref|YP_493219.1| hypothetical protein SAUSA300_0516 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194293|ref|YP_499085.1| hypothetical protein SAOUHSC_00512 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266990|ref|YP_001245933.1| hypothetical protein SaurJH9_0553 [Staphylococcus aureus subsp. aureus JH9] gi|150393037|ref|YP_001315712.1| hypothetical protein SaurJH1_0567 [Staphylococcus aureus subsp. aureus JH1] gi|151220705|ref|YP_001331527.1| hypothetical protein NWMN_0493 [Staphylococcus aureus subsp. aureus str. Newman] gi|156978859|ref|YP_001441118.1| hypothetical protein SAHV_0528 [Staphylococcus aureus subsp. aureus Mu3] gi|161508770|ref|YP_001574429.1| hypothetical protein USA300HOU_0524 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141033|ref|ZP_03565526.1| hypothetical protein SauraJ_05263 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315640|ref|ZP_04838853.1| hypothetical protein SauraC_05747 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731135|ref|ZP_04865300.1| ribonuclease III [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253732538|ref|ZP_04866703.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH130] gi|255005324|ref|ZP_05143925.2| hypothetical protein SauraM_02615 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795371|ref|ZP_05644350.1| ribonuclease III [Staphylococcus aureus A9781] gi|258420420|ref|ZP_05683363.1| ribonuclease III [Staphylococcus aureus A9719] gi|258439341|ref|ZP_05690273.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9299] gi|258444081|ref|ZP_05692418.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258446349|ref|ZP_05694507.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A6300] gi|258448442|ref|ZP_05696557.1| YazC [Staphylococcus aureus A6224] gi|258452737|ref|ZP_05700735.1| ribonuclease III [Staphylococcus aureus A5948] gi|258453798|ref|ZP_05701772.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262049573|ref|ZP_06022442.1| hypothetical protein SAD30_0367 [Staphylococcus aureus D30] gi|262052419|ref|ZP_06024619.1| hypothetical protein SA930_0255 [Staphylococcus aureus 930918-3] gi|269202153|ref|YP_003281422.1| hypothetical protein SAAV_0492 [Staphylococcus aureus subsp. aureus ED98] gi|282894965|ref|ZP_06303188.1| ribonuclease III family protein [Staphylococcus aureus A8117] gi|282915853|ref|ZP_06323618.1| ribonuclease III family protein [Staphylococcus aureus subsp. aureus D139] gi|282924444|ref|ZP_06332116.1| ribonuclease III family protein [Staphylococcus aureus A9765] gi|282928867|ref|ZP_06336458.1| ribonuclease III family protein [Staphylococcus aureus A10102] gi|283769686|ref|ZP_06342578.1| ribonuclease III family protein [Staphylococcus aureus subsp. aureus H19] gi|284023540|ref|ZP_06377938.1| hypothetical protein Saura13_03082 [Staphylococcus aureus subsp. aureus 132] gi|294850306|ref|ZP_06791040.1| ribonuclease III family protein [Staphylococcus aureus A9754] gi|295406907|ref|ZP_06816710.1| ribonuclease III family protein [Staphylococcus aureus A8819] gi|296275776|ref|ZP_06858283.1| hypothetical protein SauraMR_05492 [Staphylococcus aureus subsp. aureus MR1] gi|297208756|ref|ZP_06925184.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246269|ref|ZP_06930118.1| ribonuclease III family protein [Staphylococcus aureus A8796] gi|300912846|ref|ZP_07130288.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70] gi|304381871|ref|ZP_07364518.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13183697|gb|AAK15304.1|AF327733_1 YazC [Staphylococcus aureus subsp. aureus str. Newman] gi|13700421|dbj|BAB41719.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|21203651|dbj|BAB94351.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|46395519|dbj|BAD16605.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50] gi|49243838|emb|CAG42263.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285593|gb|AAW37687.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus COL] gi|87127584|gb|ABD22098.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201851|gb|ABD29661.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740059|gb|ABQ48357.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH9] gi|149945489|gb|ABR51425.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH1] gi|150373505|dbj|BAF66765.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156720994|dbj|BAF77411.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3] gi|160367579|gb|ABX28550.1| hypothetical protein USA300HOU_0524 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725100|gb|EES93829.1| ribonuclease III [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253729467|gb|EES98196.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH130] gi|257789343|gb|EEV27683.1| ribonuclease III [Staphylococcus aureus A9781] gi|257843610|gb|EEV68016.1| ribonuclease III [Staphylococcus aureus A9719] gi|257847678|gb|EEV71677.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9299] gi|257850751|gb|EEV74696.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257854943|gb|EEV77888.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A6300] gi|257858311|gb|EEV81198.1| YazC [Staphylococcus aureus A6224] gi|257859610|gb|EEV82460.1| ribonuclease III [Staphylococcus aureus A5948] gi|257864054|gb|EEV86808.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|259159665|gb|EEW44709.1| hypothetical protein SA930_0255 [Staphylococcus aureus 930918-3] gi|259162313|gb|EEW46886.1| hypothetical protein SAD30_0367 [Staphylococcus aureus D30] gi|262074443|gb|ACY10416.1| hypothetical protein SAAV_0492 [Staphylococcus aureus subsp. aureus ED98] gi|269940103|emb|CBI48479.1| putative ribonuclease [Staphylococcus aureus subsp. aureus TW20] gi|282320149|gb|EFB50494.1| ribonuclease III family protein [Staphylococcus aureus subsp. aureus D139] gi|282589475|gb|EFB94564.1| ribonuclease III family protein [Staphylococcus aureus A10102] gi|282592855|gb|EFB97859.1| ribonuclease III family protein [Staphylococcus aureus A9765] gi|282762647|gb|EFC02784.1| ribonuclease III family protein [Staphylococcus aureus A8117] gi|283459833|gb|EFC06923.1| ribonuclease III family protein [Staphylococcus aureus subsp. aureus H19] gi|285816230|gb|ADC36717.1| Small protein; cysteinyl-tRNA synthetase like-protein [Staphylococcus aureus 04-02981] gi|294822818|gb|EFG39253.1| ribonuclease III family protein [Staphylococcus aureus A9754] gi|294968138|gb|EFG44164.1| ribonuclease III family protein [Staphylococcus aureus A8819] gi|296886701|gb|EFH25606.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176867|gb|EFH36125.1| ribonuclease III family protein [Staphylococcus aureus A8796] gi|300885950|gb|EFK81153.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70] gi|302750422|gb|ADL64599.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339657|gb|EFM05604.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829026|emb|CBX33868.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128823|gb|EFT84822.1| hypothetical protein CGSSa03_13062 [Staphylococcus aureus subsp. aureus CGS03] gi|315196658|gb|EFU27005.1| hypothetical protein CGSSa01_14595 [Staphylococcus aureus subsp. aureus CGS01] gi|320141605|gb|EFW33444.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320141767|gb|EFW33595.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323439801|gb|EGA97518.1| hypothetical protein SAO11_1359 [Staphylococcus aureus O11] gi|323443097|gb|EGB00717.1| hypothetical protein SAO46_1004 [Staphylococcus aureus O46] gi|329313251|gb|AEB87664.1| Ribonuclease III [Staphylococcus aureus subsp. aureus T0131] gi|329727910|gb|EGG64359.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21172] gi|329731024|gb|EGG67397.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21189] gi|329731960|gb|EGG68316.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21193] Length = 134 Score = 35.8 bits (82), Expect = 4.6, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 13/113 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94 L ++GD +L + T + +K +L VSA++ +Q L + Sbjct: 17 LAYMGDAVLDQYVRTYIVLKL-KSKPNKLHQMSKKYVSAKSQAQTLEYLMEQEWFTDEEM 75 Query: 95 SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYW 143 ++ + + + T +Q + +E++I LYL+ E ++K Sbjct: 76 DILKRGRNAKSHTKAKNTDVQTYRKSSAIEAVIGFLYLEKREERLEALLNKII 128 >gi|226289366|gb|EEH44878.1| predicted protein [Paracoccidioides brasiliensis Pb18] Length = 123 Score = 35.8 bits (82), Expect = 4.6, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 4/94 (4%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ + +E IGY+F N +L +AL +S E ++L GD + L ++ F + Sbjct: 14 VKVNAIESTIGYSFTNSNLCLEALWIAS--PITGEGDKKLAQAGDDAVKLALAVSGFEN- 70 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 G++S + S E++L + Sbjct: 71 -GYSRGQISEITSVTASNRHLGYKGFEIELQEHM 103 >gi|82750238|ref|YP_415979.1| hypothetical protein SAB0481 [Staphylococcus aureus RF122] gi|82655769|emb|CAI80169.1| conserved hypothetical protein [Staphylococcus aureus RF122] Length = 134 Score = 35.8 bits (82), Expect = 4.8, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 13/113 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94 L ++GD +L + T + +K +L VSA++ +Q L + Sbjct: 17 LAYMGDAVLDQYVRTYIVLKL-KSKPNKLHQMSKKYVSAKSQAQTLEYLMEQEWFTNEEM 75 Query: 95 SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYW 143 ++ + + + T +Q + +E++I LYL+ E ++K Sbjct: 76 DILKRGRNAKSHTKAKNTDVQTYRKSSAIEAVIGFLYLEKREERLEALLNKII 128 >gi|147779552|emb|CAN61162.1| hypothetical protein VITISV_001392 [Vitis vinifera] Length = 458 Score = 35.8 bits (82), Expect = 4.8, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%) Query: 143 WKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFR 180 W ++ + + RRD K +LQE A P Y R Sbjct: 84 WVRKYVSRARNRRDRYKNQLQELAQRSCFNLPSYTCIRR 122 >gi|298693862|gb|ADI97084.1| putative cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED133] Length = 123 Score = 35.8 bits (82), Expect = 4.8, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 13/113 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94 L ++GD +L + T + +K +L VSA++ +Q L + Sbjct: 6 LAYMGDAVLDQYVRTYIVLKL-KSKPNKLHQMSKKYVSAKSQAQTLEYLMEQEWFTDEEM 64 Query: 95 SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYW 143 ++ + + + T +Q + +E++I LYL+ E ++K Sbjct: 65 DILKRGRNAKSHTKAKNTDVQTYRKSSAIEAVIGFLYLEKREERLEALLNKII 117 >gi|258512690|ref|YP_003186124.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479416|gb|ACV59735.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 137 Score = 35.8 bits (82), Expect = 5.0, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 11/95 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL------ASF 96 L FLGD + + + + + +L + VSA ++ R L+ Sbjct: 15 LAFLGDAVWEIY-ARNHCLNLGILRPRDLQRQATRYVSAVAQAEALRLLEPMLTDAERDV 73 Query: 97 IRVSSDLRKDVCSFMTSI----QADVVESLIAALY 127 IR + + + A E+L+ LY Sbjct: 74 IRRGRNQKSSHTRRNVDVVVYRLATGFEALVGYLY 108 >gi|86134021|ref|ZP_01052603.1| conserved hypothetical protein [Polaribacter sp. MED152] gi|85820884|gb|EAQ42031.1| conserved hypothetical protein [Polaribacter sp. MED152] Length = 935 Score = 35.8 bits (82), Expect = 5.0, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 16/78 (20%) Query: 1 MSALRYSTLEKR----IGYAFANRSLLEKALTHS--SISHSYQESYER----LEF----- 45 + + S LE + Y F++R L++ALT S S+S+ ++ R L F Sbjct: 378 LRSFNLSKLEFNDKYPLVYQFSSRRFLDQALTTSADSLSNFNRKIANRYKAGLAFKYLKG 437 Query: 46 -LGDRILGLLISTLLFNH 62 LGD +L I + Sbjct: 438 YLGDSLLNSSIKEFYQEN 455 >gi|307199731|gb|EFN80210.1| NF-kappa-B-repressing factor [Harpegnathos saltator] Length = 391 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 15/38 (39%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + I A S++ A++ AAA L + Sbjct: 196 NKSCDCTIYIDSKRVACASGSSQKIAKKEAAAVALDKL 233 >gi|297279850|ref|XP_001102807.2| PREDICTED: myomegalin-like [Macaca mulatta] Length = 346 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 13/64 (20%) Query: 161 LQE---------WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRA 210 LQE +A A +Y+V +G +F+ V++ L G SK Sbjct: 85 LQEKLLLSEATVFAQANELE--KYRVIL-TGESLVKQFSKQVQVDLLDLGYGTCGRSKNE 141 Query: 211 AEQV 214 AEQ Sbjct: 142 AEQE 145 >gi|218290035|ref|ZP_03494202.1| ribonuclease III [Alicyclobacillus acidocaldarius LAA1] gi|218239869|gb|EED07057.1| ribonuclease III [Alicyclobacillus acidocaldarius LAA1] Length = 137 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 11/95 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL------ASF 96 L FLGD + + + + + +L + VSA ++ R L+ Sbjct: 15 LAFLGDAVWEIY-ARNHCLNLGILRPRDLQRQATRYVSAVAQAEALRLLEPMLTEAERDV 73 Query: 97 IRVSSDLRKDVCSFMTSI----QADVVESLIAALY 127 IR + + + A E+L+ LY Sbjct: 74 IRRGRNQKSSHTRRNVDVVVYRLATGFEALVGYLY 108 >gi|254828700|ref|ZP_05233387.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254831935|ref|ZP_05236590.1| YazC protein [Listeria monocytogenes 10403S] gi|255027362|ref|ZP_05299348.1| YazC protein [Listeria monocytogenes FSL J2-003] gi|284800535|ref|YP_003412400.1| hypothetical protein LM5578_0282 [Listeria monocytogenes 08-5578] gi|284993721|ref|YP_003415489.1| hypothetical protein LM5923_0281 [Listeria monocytogenes 08-5923] gi|258601105|gb|EEW14430.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|284056097|gb|ADB67038.1| hypothetical protein LM5578_0282 [Listeria monocytogenes 08-5578] gi|284059188|gb|ADB70127.1| hypothetical protein LM5923_0281 [Listeria monocytogenes 08-5923] Length = 136 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 13/114 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97 L ++GD + I L K +L VSA+ + + + F+ Sbjct: 15 LAYMGDAVYEKFIREYLLAAG-KTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTEEED 73 Query: 98 RVSSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVDKYWK 144 R++ R + + E+++ LYL G ++ +++K + Sbjct: 74 RIAKRGRNAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGDVDRLQEWMEKALE 127 >gi|223043008|ref|ZP_03613056.1| cysteinyl-tRNA synthetase [Staphylococcus capitis SK14] gi|314932754|ref|ZP_07840123.1| cysteine--tRNA ligase [Staphylococcus caprae C87] gi|222443862|gb|EEE49959.1| cysteinyl-tRNA synthetase [Staphylococcus capitis SK14] gi|313654435|gb|EFS18188.1| cysteine--tRNA ligase [Staphylococcus caprae C87] Length = 128 Score = 35.4 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 13/100 (13%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94 L ++GD +L + + +K L VSA++ +Q L + Sbjct: 11 LAYMGDAVLDQHVREYIVLKL-QSKPNRLHQVSKQYVSAKSQAQTLEYLISNDWFTEEEL 69 Query: 95 SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDG 130 + +R + + + T +Q + +E++I LYLD Sbjct: 70 NVLRRGRNAKSYTKAKNTDVQTYRKSSALEAVIGFLYLDH 109 >gi|71408148|ref|XP_806495.1| RNA editing complex protein MP61 [Trypanosoma cruzi strain CL Brener] gi|70870260|gb|EAN84644.1| RNA editing complex protein MP61, putative [Trypanosoma cruzi] Length = 532 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 11/92 (11%) Query: 40 YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS---LVSAETCSQVARELDLASF 96 +ERLE++GD ++ + + F + G + + + ++ L+L F Sbjct: 220 FERLEWIGDNVVKYVFNDRFNVIFPVREGGIRGRLGYAQFMIDGNDGLARAYDHLELQKF 279 Query: 97 IRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 ++ ++DVVE+L L L Sbjct: 280 TL--------SDRVVSKFKSDVVETLFGELQL 303 >gi|302680092|ref|XP_003029728.1| expressed protein [Schizophyllum commune H4-8] gi|300103418|gb|EFI94825.1| expressed protein [Schizophyllum commune H4-8] Length = 514 Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 14/114 (12%) Query: 34 HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK--EGELSVRFNSLVSAETCSQVAREL 91 H + ++ LE GD +L L I L+ F V ++L S + + Sbjct: 108 HGSRVVFDILERRGDLVLYLYIGRLILETFPRICGFPQLFFVIRSALTSNFFLGCLLKGQ 167 Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 L + + AD++E+++ L G A FVD + Sbjct: 168 HLWPGLI---GEKSA---------ADMLEAIVGKLDQIRGAATAEAFVDDLLRP 209 >gi|89100737|ref|ZP_01173592.1| hypothetical protein B14911_00239 [Bacillus sp. NRRL B-14911] gi|89084554|gb|EAR63700.1| hypothetical protein B14911_00239 [Bacillus sp. NRRL B-14911] Length = 141 Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 13/134 (9%) Query: 34 HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 + Q + L ++GD + + L + + L + VSA+ S V + Sbjct: 9 NEKQLNSLALAYMGDAVFEQYVRNHLIQKG-TVRPNFLHKEATAYVSAKAQSYVIHKFLE 67 Query: 94 ASFI--------RVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDK 141 A F+ R + + T +Q + E+LI LYL G E + Sbjct: 68 ADFLDEEEAAVVRRGRNAKSGTIPKNTDVQTYRYSTAFEALIGYLYLAGAEERLEEIISA 127 Query: 142 YWKQRALKSGKFRR 155 + + G + Sbjct: 128 AFLHAEERKGGQGK 141 >gi|161579135|gb|ABX72055.1| C3PO protein [Tribolium castaneum] Length = 117 Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V+ G A G SK+ A+ +A L + Sbjct: 15 FKCTVKAGG-VTACGYGTSKKNAKHESAKNALVKL 48 >gi|331003583|ref|ZP_08327080.1| hypothetical protein HMPREF0491_01942 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412424|gb|EGG91815.1| hypothetical protein HMPREF0491_01942 [Lachnospiraceae oral taxon 107 str. F0167] Length = 151 Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 11/109 (10%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR----ELDLASFIR 98 L ++GD + L+I ++L + + +L+ LV A +Q+ + EL FI Sbjct: 27 LAYIGDAVYELIIRSILVS-GGNRPVNKLNKDATYLVKAGAQAQIIKLITSELSEEEFII 85 Query: 99 VSSDLRKD------VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 S A ESLI LYL+ E A V K Sbjct: 86 FKRGRNSSPHTMAKNASMSDYKHATGFESLIGYLYLNNQFERALWIVRK 134 >gi|260437952|ref|ZP_05791768.1| cysteine--tRNA ligase [Butyrivibrio crossotus DSM 2876] gi|292809703|gb|EFF68908.1| cysteine--tRNA ligase [Butyrivibrio crossotus DSM 2876] Length = 139 Score = 35.4 bits (81), Expect = 5.9, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 19/120 (15%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 L ++GD + L+I T L +A +L+ + ++L A T +++ + +S D Sbjct: 24 LAYIGDCVYELIIRTNLVTRG-NAPVNKLNKKASNLAKASTQARIIESI----MDMLSED 78 Query: 103 LRKDVCSFM--------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 +A E+LI LYL + V K +++ + Sbjct: 79 EEAAYKRGRNAHSCTKAKNASTSDYRKATGFEALIGYLYLQKKFDRIMELVKKGFQEEHI 138 >gi|38073445|gb|AAR10843.1| MP61 [Trypanosoma cruzi] Length = 532 Score = 35.4 bits (81), Expect = 5.9, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 11/92 (11%) Query: 40 YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS---LVSAETCSQVARELDLASF 96 +ERLE++GD ++ + + F + G + + + ++ L+L F Sbjct: 220 FERLEWIGDNVVKYVFNDRFNVIFPVREGGIRGRLGYAQFMIDGNDGLARAYDHLELQKF 279 Query: 97 IRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 ++ ++DVVE+L L L Sbjct: 280 TL--------SDRVVSKFKSDVVETLFGELQL 303 >gi|301611921|ref|XP_002935471.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Xenopus (Silurana) tropicalis] Length = 579 Score = 35.4 bits (81), Expect = 5.9, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 13/35 (37%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 L+E P Y++ GPD F V I Sbjct: 444 LEEICQKNNWGQPVYQLHSAIGPDQRQLFLYKVTI 478 >gi|301611919|ref|XP_002935470.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Xenopus (Silurana) tropicalis] Length = 587 Score = 35.4 bits (81), Expect = 5.9, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 13/35 (37%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 L+E P Y++ GPD F V I Sbjct: 452 LEEICQKNNWGQPVYQLHSAIGPDQRQLFLYKVTI 486 >gi|149637182|ref|XP_001509697.1| PREDICTED: similar to NF-kappaB repressing factor [Ornithorhynchus anatinus] Length = 680 Score = 35.4 bits (81), Expect = 5.9, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + + V + A+G SK+ ++ AA E L+ Sbjct: 362 NRTWRCRVYLQDHCLAEGYG-SKKTSKHAAADEALR 396 >gi|147905061|ref|NP_001086049.1| APOBEC1 complementation factor [Xenopus laevis] gi|49522081|gb|AAH74127.1| MGC81834 protein [Xenopus laevis] Length = 584 Score = 35.4 bits (81), Expect = 5.9, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 13/35 (37%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 L+E P Y++ GPD F V I Sbjct: 449 LEEICQKNNWGQPVYQLHSAIGPDQRQLFLYKVTI 483 >gi|312621708|ref|YP_004023321.1| ribonuclease iii [Caldicellulosiruptor kronotskyensis 2002] gi|312202175|gb|ADQ45502.1| ribonuclease III [Caldicellulosiruptor kronotskyensis 2002] Length = 145 Score = 35.4 bits (81), Expect = 6.0, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 42/123 (34%), Gaps = 10/123 (8%) Query: 45 FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--DLAS----FIR 98 ++GD + L + + +R V A + + +++ +L ++ Sbjct: 23 YIGDAVYELFVRNKIIAENPDLPPYLYYLRTTMYVKASSQAMAIKKIYEELDEDEKRIVK 82 Query: 99 VSSDLRKDVCSFMTSI----QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR 154 + + + A +E+LI LYL+ IE + + + + + Sbjct: 83 RGRNAKPKTIPKNAKLSDYKYATALEALIGYLYLENNIERLNYILSQTYNIITEEYSNAK 142 Query: 155 RDA 157 + Sbjct: 143 NNY 145 >gi|118444271|ref|YP_877178.1| hypothetical protein NT01CX_1094 [Clostridium novyi NT] gi|118134727|gb|ABK61771.1| uncharacterized conserved protein [Clostridium novyi NT] Length = 137 Score = 35.4 bits (81), Expect = 6.0, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 10/108 (9%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD---LASFIRV 99 L F+GD I + + L +L V+ S V A + S++ +++ R+ Sbjct: 23 LAFVGDAIYEVFVRRYLVEQNQDMSAHKLHVKAVSYVKAHSQSEIMKQIKESLTEEEERI 82 Query: 100 SSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVD 140 R + A E+L+ LYL ++ ++ Sbjct: 83 FKRGRNAKSGTVPKNADVREYRMATGFEALMGFLYLTNQLDRLNELMN 130 >gi|154482525|ref|ZP_02024973.1| hypothetical protein EUBVEN_00192 [Eubacterium ventriosum ATCC 27560] gi|149736655|gb|EDM52541.1| hypothetical protein EUBVEN_00192 [Eubacterium ventriosum ATCC 27560] Length = 1746 Score = 35.4 bits (81), Expect = 6.1, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 27/117 (23%) Query: 99 VSSDLRKDVCSFMTSIQADVVESL-IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 +S S+ D+ + + ++L +E + L+ + + Sbjct: 300 LSEGEDNVQSKCNQSLTVDLGKKYTLGRVFLQWQVEYGNIW--------DLQVSEDGTNF 351 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV----VEISGLAPAQGMDCSKRA 210 KT Y+ +G D D +F V + G+ +G S R Sbjct: 352 KT--------------VYRQLQGNGEDEDIKFYAENVRYVRMQGILMGRGSGYSIRE 394 >gi|72387752|ref|XP_844300.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62359452|gb|AAX79889.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70800833|gb|AAZ10741.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 2167 Score = 35.4 bits (81), Expect = 6.1, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 2/76 (2%) Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP--AQGM 204 ++S DAKT LQ + + P + + GP +E+ G A G+ Sbjct: 1015 EVESMPIDPDAKTVLQRYCNVANVNYPTFWKSRTVGPISCRVCLTTIEVPGHEYLRASGV 1074 Query: 205 DCSKRAAEQVAAAEVL 220 +K A+++ AA L Sbjct: 1075 AWNKEASQRQAAMHAL 1090 >gi|302332244|gb|ADL22437.1| ribonuclease III [Staphylococcus aureus subsp. aureus JKD6159] Length = 134 Score = 35.4 bits (81), Expect = 6.1, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 13/113 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94 L ++GD +L + T + +K +L VSA++ +Q L + Sbjct: 17 LAYMGDAVLDQYVRTYIVLKL-KSKPNKLHQMSKKYVSAKSQAQTLEYLMEQEWFTDEEM 75 Query: 95 SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYW 143 ++ + + + T +Q + +E++I LYL+ E ++K Sbjct: 76 DILKRGRNAKSHTKAKNTDVQTYRKSSAIEAVIGFLYLEKREERLEVLLNKII 128 >gi|16802286|ref|NP_463771.1| hypothetical protein lmo0240 [Listeria monocytogenes EGD-e] gi|224498914|ref|ZP_03667263.1| hypothetical protein LmonF1_04103 [Listeria monocytogenes Finland 1988] gi|224502465|ref|ZP_03670772.1| hypothetical protein LmonFR_08089 [Listeria monocytogenes FSL R2-561] gi|255028570|ref|ZP_05300521.1| hypothetical protein LmonL_04056 [Listeria monocytogenes LO28] gi|16409605|emb|CAD00767.1| lmo0240 [Listeria monocytogenes EGD-e] Length = 136 Score = 35.4 bits (81), Expect = 6.1, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 13/114 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97 L ++GD + I L K +L VSA+ + + + F+ Sbjct: 15 LAYMGDAVYEKFIREYLLAAG-KTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTEEED 73 Query: 98 RVSSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVDKYWK 144 R++ R + + E+++ LYL G +E +++K + Sbjct: 74 RIAKRGRNAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGEMERLQEWMEKALE 127 >gi|316973958|gb|EFV57499.1| putative double-stranded RNA binding motif protein [Trichinella spiralis] Length = 514 Score = 35.4 bits (81), Expect = 6.2, Method: Composition-based stats. Identities = 8/24 (33%), Positives = 12/24 (50%) Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221 + G SK+ A+ AA + LK Sbjct: 263 VTIGVGNGNSKKNAKLEAARQALK 286 >gi|257439636|ref|ZP_05615391.1| ribonuclease III [Faecalibacterium prausnitzii A2-165] gi|257197903|gb|EEU96187.1| ribonuclease III [Faecalibacterium prausnitzii A2-165] Length = 150 Score = 35.4 bits (81), Expect = 6.2, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 13/114 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSV-------RFNSLVSAETCSQVARELDLAS 95 L F+GD +L LL+ T L H G+L+V + + E +LA Sbjct: 33 LAFVGDSVLELLVRTRLARHHR-MSAGKLNVEKVKYVSARAQFREEQLLEPLFTEEELAV 91 Query: 96 FIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 F + + K + S + + E L+ LYL G + D W+Q Sbjct: 92 F-KRGRNASKASVAKHASPEEYRASTGFECLLGWLYLTGQMARVEELFDALWQQ 144 >gi|320162745|gb|EFW39644.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 915 Score = 35.4 bits (81), Expect = 6.2, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 6/38 (15%) Query: 15 YAFAN--RSLLEKALTHSSISHSYQESY----ERLEFL 46 Y FAN R++L ALTH S + +E+ +RL FL Sbjct: 211 YEFANHCRTILTLALTHPSFTFHQKETVMGLLQRLLFL 248 >gi|315274657|ref|ZP_07869497.1| ribonuclease III [Listeria marthii FSL S4-120] gi|313615714|gb|EFR89002.1| ribonuclease III [Listeria marthii FSL S4-120] Length = 136 Score = 35.4 bits (81), Expect = 6.2, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 13/114 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97 L ++GD + I L K +L VSA+ + + + F+ Sbjct: 15 LAYMGDAVYEKFIREYLLAAG-KTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTEEED 73 Query: 98 RVSSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVDKYWK 144 R++ R + + E+++ LYL G ++ +++K + Sbjct: 74 RIAKRGRNAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGEMDRLQEWMEKALE 127 >gi|149245990|ref|XP_001527465.1| hypothetical protein LELG_02294 [Lodderomyces elongisporus NRRL YB-4239] gi|146449859|gb|EDK44115.1| hypothetical protein LELG_02294 [Lodderomyces elongisporus NRRL YB-4239] Length = 721 Score = 35.4 bits (81), Expect = 6.2, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 9/106 (8%) Query: 47 GDRILGLLISTLLFNHFDSAKEGEL-SVRFNSLVSAETCSQVARELDLASFI-------R 98 GD +L + L + L + S+++ L I Sbjct: 580 GDAVLSRFSTEFLIQLLKQNPNFRWNTDDLFFLNTNVIFSRLSFAYSLHEAIDNQEHRRL 639 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 V + + I D+ E L+A Y+ E +V K ++ Sbjct: 640 VEQKILLSHLNEANEILGDLFERLVAVTYI-QDPERCREWVFKIYE 684 >gi|310779626|ref|YP_003967959.1| ribonuclease III [Ilyobacter polytropus DSM 2926] gi|309748949|gb|ADO83611.1| ribonuclease III [Ilyobacter polytropus DSM 2926] Length = 127 Score = 35.4 bits (81), Expect = 6.3, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--DLA-SFIRV 99 L +LGD + L + K ++ + LV+A+ S + + + DL + V Sbjct: 14 LAYLGDAVWELTVREYFVEK--GYKINTMNKKVKKLVNAKAQSVIFKSILEDLDEDYKAV 71 Query: 100 SSDLRKDV-------CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 + + CS M +A E+LIAA Y++G ++ + + Sbjct: 72 ARRAKNSNIKSFPRSCSIMEYREATAFEALIAAFYINGETCRIKKILENHISE 124 >gi|261327455|emb|CBH10430.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 2173 Score = 35.4 bits (81), Expect = 6.3, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 2/76 (2%) Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP--AQGM 204 ++S DAKT LQ + + P + + GP +E+ G A G+ Sbjct: 1021 EVESMPIDPDAKTVLQRYCNVANVNYPTFWKSRTVGPISCRVCLTTIEVPGHEYLRASGV 1080 Query: 205 DCSKRAAEQVAAAEVL 220 +K A+++ AA L Sbjct: 1081 AWNKEASQRQAAMHAL 1096 >gi|145603542|ref|XP_369494.2| hypothetical protein MGG_05970 [Magnaporthe oryzae 70-15] gi|145011757|gb|EDJ96413.1| hypothetical protein MGG_05970 [Magnaporthe oryzae 70-15] Length = 117 Score = 35.4 bits (81), Expect = 6.7, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCS-FMTSIQADVVESLIAALYLDGGIEVAG 136 +V +++ E L +R + S M + D + ++I A+ + G EVA Sbjct: 44 IVDQVKLARLGMEYGLHEVVRWQPRAISSINSSGMQKVMKDCIYAIIGAISMQHGAEVAR 103 Query: 137 TFVDKYWKQRA 147 + ++ Sbjct: 104 RVCRERVIKKV 114 >gi|225719036|gb|ACO15364.1| Interferon-inducible double stranded RNA-dependent protein kinase activator A [Caligus clemensi] Length = 324 Score = 35.1 bits (80), Expect = 7.0, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 6/65 (9%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPD-HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 LQ P+Y+ + S H+ V V + +G K+ A+++A+ + Sbjct: 141 LQILCTKSKLEAPQYEYSQDSVSSRHEAVCKVGVLV-----TKGEHSVKKEAKKIASMNM 195 Query: 220 LKREG 224 + + G Sbjct: 196 IAQMG 200 >gi|169830057|ref|YP_001700215.1| hypothetical protein Bsph_4641 [Lysinibacillus sphaericus C3-41] gi|168994545|gb|ACA42085.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 137 Score = 35.1 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 13/109 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97 L ++GD +L I L K L VSA+ S + + +++ Sbjct: 17 LAYMGDAVLEQKIREHLLRSGR-VKPNTLHREATRYVSAKAQSMIVHRMMDENYLTEEEL 75 Query: 98 ---RVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFV 139 R + + T +Q + E+++ +LYL +E + Sbjct: 76 AVFRRGRNAKSGSVPKNTDVQTYRNSSGFEAVLGSLYLLNELERVYEII 124 >gi|46906473|ref|YP_012862.1| hypothetical protein LMOf2365_0252 [Listeria monocytogenes serotype 4b str. F2365] gi|46879737|gb|AAT03039.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b str. F2365] Length = 141 Score = 35.1 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 13/114 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97 L ++GD + I L K +L VSA+ + + + F+ Sbjct: 15 LAYMGDAVYEKFIREYLLAAG-KTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTEEED 73 Query: 98 RVSSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVDKYWK 144 R++ R + + E+++ LYL G ++ +++K + Sbjct: 74 RIAKRGRNAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGELDRLQEWMEKALE 127 >gi|321469560|gb|EFX80540.1| hypothetical protein DAPPUDRAFT_211957 [Daphnia pulex] Length = 549 Score = 35.1 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 L E+ P Y TF+ + ++ V I+G+ G+ S Sbjct: 280 LHEYVQHALKKQPAY--TFKEIENAATPYSATVLINGMQYGTGVGSS 324 >gi|308171986|ref|YP_003918691.1| RNase Mini-III MrnC [Bacillus amyloliquefaciens DSM 7] gi|307604850|emb|CBI41221.1| RNase Mini-III MrnC [Bacillus amyloliquefaciens DSM 7] gi|328551796|gb|AEB22288.1| RNase Mini-III MrnC [Bacillus amyloliquefaciens TA208] gi|328910057|gb|AEB61653.1| RNase Mini-III MrnC [Bacillus amyloliquefaciens LL3] Length = 143 Score = 35.1 bits (80), Expect = 7.6, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 13/114 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF------ 96 L ++GD I + + L K +L + + +VSA++ + + L SF Sbjct: 18 LAYMGDAIFEIYVRHHLLKQG-HTKPNDLHKKASRIVSAKSQADILFRLQDESFFTEEEE 76 Query: 97 --IRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWK 144 +R + + T +Q + E+L+ L+L+ E + + + Sbjct: 77 AVLRRGRNAKSGTTPKNTDVQTYRHSTAFEALLGYLFLEKREERLDQLITEALQ 130 >gi|116871623|ref|YP_848404.1| hypothetical protein lwe0203 [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740501|emb|CAK19621.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 136 Score = 35.1 bits (80), Expect = 8.2, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 13/114 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97 L ++GD + I L K +L VSA+ + + + F+ Sbjct: 15 LAYMGDAVYEKFIREYLLAAG-KTKPNQLHKTATKFVSAKGQAMALKVMIAEGFLTEEED 73 Query: 98 RVSSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVDKYWK 144 R++ R + + E+++ LYL G + +++K + Sbjct: 74 RIAKRGRNAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGDMRRLQEWMEKALE 127 >gi|226222869|ref|YP_002756976.1| YazC protein [Listeria monocytogenes Clip81459] gi|254853493|ref|ZP_05242841.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|254932459|ref|ZP_05265818.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|254991760|ref|ZP_05273950.1| YazC protein [Listeria monocytogenes FSL J2-064] gi|300764635|ref|ZP_07074627.1| hypothetical protein LMHG_11119 [Listeria monocytogenes FSL N1-017] gi|225875331|emb|CAS04028.1| Putative YazC protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606865|gb|EEW19473.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|293584015|gb|EFF96047.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|300514742|gb|EFK41797.1| hypothetical protein LMHG_11119 [Listeria monocytogenes FSL N1-017] gi|328467851|gb|EGF38891.1| YazC protein [Listeria monocytogenes 1816] gi|328476081|gb|EGF46790.1| YazC protein [Listeria monocytogenes 220] gi|332310651|gb|EGJ23746.1| Ribonuclease III [Listeria monocytogenes str. Scott A] Length = 136 Score = 35.1 bits (80), Expect = 8.5, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 13/114 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97 L ++GD + I L K +L VSA+ + + + F+ Sbjct: 15 LAYMGDAVYEKFIREYLLAAG-KTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTEEED 73 Query: 98 RVSSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVDKYWK 144 R++ R + + E+++ LYL G ++ +++K + Sbjct: 74 RIAKRGRNAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGELDRLQEWMEKALE 127 >gi|238880467|gb|EEQ44105.1| conserved hypothetical protein [Candida albicans WO-1] Length = 778 Score = 35.1 bits (80), Expect = 8.7, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 8/106 (7%) Query: 46 LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC-SQVARELDLASFIRVSSDLR 104 LGD IL + N + + ++ ++ ++A L I+ Sbjct: 639 LGDAILKRISCEYFMNVSKTDPTFKWNMDDIHFINTNILFGRLAIAYRLHEGIQNEEYSA 698 Query: 105 KDVCSFMTSI------QADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + S+ + E+L++ LYLD E ++ K + Sbjct: 699 FIKNRLLGSLDSANVFLGNHFETLVSVLYLDS-PETCTKWMFKVYD 743 >gi|49482760|ref|YP_039984.1| hypothetical protein SAR0534 [Staphylococcus aureus subsp. aureus MRSA252] gi|257424644|ref|ZP_05601071.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053] gi|257427312|ref|ZP_05603711.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322] gi|257429948|ref|ZP_05606332.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432650|ref|ZP_05609010.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257435554|ref|ZP_05611602.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876] gi|282903118|ref|ZP_06311009.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus C160] gi|282904908|ref|ZP_06312766.1| ribonuclease III family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282907858|ref|ZP_06315693.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910171|ref|ZP_06317975.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049] gi|282913363|ref|ZP_06321152.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus M899] gi|282918318|ref|ZP_06326055.1| ribonuclease III family protein [Staphylococcus aureus subsp. aureus C427] gi|282923280|ref|ZP_06330960.1| ribonuclease III family protein [Staphylococcus aureus subsp. aureus C101] gi|283957328|ref|ZP_06374781.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|293500409|ref|ZP_06666260.1| ribonuclease III family protein [Staphylococcus aureus subsp. aureus 58-424] gi|293509354|ref|ZP_06668065.1| ribonuclease III family protein [Staphylococcus aureus subsp. aureus M809] gi|293523941|ref|ZP_06670628.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015] gi|295427068|ref|ZP_06819704.1| ribonuclease III family protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590579|ref|ZP_06949218.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8] gi|49240889|emb|CAG39556.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257272214|gb|EEV04337.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053] gi|257275505|gb|EEV06978.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322] gi|257279145|gb|EEV09746.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282065|gb|EEV12200.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257284745|gb|EEV14864.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876] gi|282314148|gb|EFB44538.1| ribonuclease III family protein [Staphylococcus aureus subsp. aureus C101] gi|282317452|gb|EFB47824.1| ribonuclease III family protein [Staphylococcus aureus subsp. aureus C427] gi|282322395|gb|EFB52717.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus M899] gi|282325563|gb|EFB55871.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049] gi|282328242|gb|EFB58520.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331733|gb|EFB61244.1| ribonuclease III family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282596073|gb|EFC01034.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus C160] gi|283469823|emb|CAQ49034.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ST398] gi|283790779|gb|EFC29594.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920904|gb|EFD97965.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015] gi|291095414|gb|EFE25675.1| ribonuclease III family protein [Staphylococcus aureus subsp. aureus 58-424] gi|291467451|gb|EFF09966.1| ribonuclease III family protein [Staphylococcus aureus subsp. aureus M809] gi|295128856|gb|EFG58486.1| ribonuclease III family protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576878|gb|EFH95593.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8] gi|312439050|gb|ADQ78121.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH60] gi|315193894|gb|EFU24288.1| hypothetical protein CGSSa00_12712 [Staphylococcus aureus subsp. aureus CGS00] Length = 134 Score = 35.1 bits (80), Expect = 8.7, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 13/113 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94 L ++GD +L + T + +K +L VSA++ +Q L + Sbjct: 17 LAYMGDAVLDQYVRTYIVLKL-KSKPNKLHQMSKKYVSAKSQAQTLEYLMEQEWFTDEEM 75 Query: 95 SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYW 143 ++ + + + T +Q + +E++I LYL+ E +++ Sbjct: 76 DILKRGRNAKSHTKAKNTDVQTYRKSSAIEAVIGFLYLEKREERLEALLNEII 128 >gi|295094034|emb|CBK83125.1| Uncharacterized protein conserved in bacteria [Coprococcus sp. ART55/1] Length = 185 Score = 35.1 bits (80), Expect = 8.8, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 18/142 (12%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 ++ + S L ++GD + LLI T L D+ + + + LV AE + L Sbjct: 17 YTNPREYSPLSLAYIGDSVFDLLIKT-LAVTKDNKQAYKYHKEVSQLVKAEAQAGYIMYL 75 Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADV-------------VESLIAALYLDGGIE---VA 135 L + + + T + E LI LYLD + Sbjct: 76 -LDNGLLTEEEEWIYKRGRNTKTHSTAKNATVGQYRMATGFECLIGFLYLDKQYDRMFEI 134 Query: 136 GTFVDKYWKQRALKSGKFRRDA 157 + + ++ + +D Sbjct: 135 TRIILNHDPVETDRAEQQHKDP 156 >gi|157690878|ref|YP_001485340.1| ribonuclease III [Bacillus pumilus SAFR-032] gi|157679636|gb|ABV60780.1| possible ribonuclease III [Bacillus pumilus SAFR-032] Length = 143 Score = 34.7 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 13/114 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF------ 96 L ++GD I + + L + EL R + +VSA++ + + L F Sbjct: 18 LAYMGDAIFEVYVRHHLLQTGATKP-NELHKRASKIVSAKSQAAILFTLQQQGFFTEAEE 76 Query: 97 --IRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWK 144 ++ + + T +Q + E+L+ L++D E + + + Sbjct: 77 AVLKRGRNAKSGTVPKNTDVQTYRYSTAFEALMGYLFIDKQDERLEELISQAIE 130 >gi|258422623|ref|ZP_05685529.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257847195|gb|EEV71203.1| conserved hypothetical protein [Staphylococcus aureus A9635] Length = 134 Score = 34.7 bits (79), Expect = 9.5, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 13/113 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94 L ++GD +L + T + +K +L VSA++ +Q L + Sbjct: 17 LAYMGDAVLDQYVRTYIVLKL-KSKPNKLHQMSKKYVSAKSQAQTLEYLMEKEWFTDEEM 75 Query: 95 SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYW 143 ++ + + + T +Q + +E++I LYL+ E +++ Sbjct: 76 DILKRGRNAKSHTKAKNTDVQTYRKSSAIEAVIGFLYLEKREERLEALLNEII 128 >gi|18043980|gb|AAH19727.1| Mrpl44 protein [Mus musculus] Length = 115 Score = 34.7 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 L E + PE ++T +SG P + V + A+G + AE+ AA Sbjct: 23 LVEELKKRDISAPESRLTRQSGSTTALPLYFVGLYCDRKLIAEGPGETVLVAEEEAARVA 82 Query: 220 LKRE 223 L++ Sbjct: 83 LRKL 86 >gi|47097640|ref|ZP_00235160.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] gi|254900579|ref|ZP_05260503.1| YazC protein [Listeria monocytogenes J0161] gi|254913470|ref|ZP_05263482.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254937949|ref|ZP_05269646.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|47013984|gb|EAL04997.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] gi|258610558|gb|EEW23166.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|293591478|gb|EFF99812.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 136 Score = 34.7 bits (79), Expect = 9.7, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 13/114 (11%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97 L ++GD + I L K +L VSA+ + + + F+ Sbjct: 15 LAYMGDAVHEKFIREYLLAAG-KTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTEEED 73 Query: 98 RVSSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVDKYWK 144 R++ R + + E+++ LYL G ++ +++K + Sbjct: 74 RIAKRGRNAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGDVDRLQEWMEKALE 127 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.314 0.174 0.559 Lambda K H 0.267 0.0531 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,982,946,336 Number of Sequences: 14124377 Number of extensions: 247993229 Number of successful extensions: 617352 Number of sequences better than 10.0: 5516 Number of HSP's better than 10.0 without gapping: 7011 Number of HSP's successfully gapped in prelim test: 1670 Number of HSP's that attempted gapping in prelim test: 590205 Number of HSP's gapped (non-prelim): 13335 length of query: 227 length of database: 4,842,793,630 effective HSP length: 134 effective length of query: 93 effective length of database: 2,950,127,112 effective search space: 274361821416 effective search space used: 274361821416 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 80 (35.1 bits)