RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780940|ref|YP_003065353.1| ribonuclease III [Candidatus
Liberibacter asiaticus str. psy62]
(227 letters)
>gnl|CDD|30916 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription].
Length = 235
Score = 221 bits (564), Expect = 1e-58
Identities = 93/224 (41%), Positives = 129/224 (57%), Gaps = 4/224 (1%)
Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
LEK++GY F ++ LLE+ALTH S + H E+ ERLEFLGD +LGL+++ LF +
Sbjct: 9 EALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYP 68
Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
+ EGELS +LVS E+ +++AREL L ++R+ K SI AD E+LI
Sbjct: 69 NLPEGELSKLRAALVSEESLAEIARELGLGDYLRLGKGEEKSGGRRRESILADAFEALIG 128
Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
A+YLD G+E A F+ K + R + +D KT LQE A+ V PEY++ G
Sbjct: 129 AIYLDSGLEAARKFILKLFLPRLEEIDAGDQFKDPKTRLQELLQAQGLVLPEYRLVKEEG 188
Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
P HD FTV V + G G SK+ AEQ AA + LK+ G+
Sbjct: 189 PAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVK 232
>gnl|CDD|29697 cd00593, RIBOc, RIBOc. Ribonuclease III C terminal domain. This
group consists of eukaryotic, bacterial and archeal
ribonuclease III (RNAse III) proteins. RNAse III is a
double stranded RNA-specific endonuclease. Prokaryotic
RNAse III is important in post-transcriptional control
of mRNA stability and translational efficiency. It is
involved in the processing of ribosomal RNA precursors.
Prokaryotic RNAse III also plays a role in the
maturation of tRNA precursors and in the processing of
phage and plasmid transcripts. Eukaryotic RNase III's
participate (through direct cleavage) in rRNA
processing, in processing of small nucleolar RNAs
(snoRNAs) and snRNA's (components of the spliceosome).
In eukaryotes RNase III or RNaseIII like enzymes such as
Dicer are involved in RNAi (RNA interference) and miRNA
(micro-RNA) gene silencing..
Length = 133
Score = 124 bits (313), Expect = 2e-29
Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 1/127 (0%)
Query: 21 SLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
SLL +ALTH S + + + ERLEFLGD +L L+++ LF F EG+L+ ++LV
Sbjct: 1 SLLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALV 60
Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
S ET +++AREL L ++R+ K I ADV E+LI A+YLDGG E A F+
Sbjct: 61 SNETLARLARELGLGKYLRLGKGEEKSGGRLRPKILADVFEALIGAIYLDGGFEAARKFL 120
Query: 140 DKYWKQR 146
+
Sbjct: 121 LRLLGPL 127
>gnl|CDD|37028 KOG1817, KOG1817, KOG1817, Ribonuclease [RNA processing and
modification].
Length = 533
Score = 113 bits (285), Expect = 3e-26
Identities = 73/224 (32%), Positives = 111/224 (49%), Gaps = 13/224 (5%)
Query: 9 LEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
E+ IG F + LL +A T SI +H +RLEFLGD IL L+++ +L+ F
Sbjct: 278 FEEIIGIVFIHIRLLARAFTLRSIPFNHLTLGHNQRLEFLGDSILQLVMTEILYRKFPDH 337
Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
EG LS+ +SLVS ET ++VA +L ++ +++ KD + AD+ E+ I AL
Sbjct: 338 HEGHLSLLRSSLVSNETQAKVADDLGFHEYL-ITNFDLKDFQNLKLKDYADLFEAFIGAL 396
Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA------KFGVTPEYKV 177
Y+D G+E F+ + R LK + D K++LQ+ P YKV
Sbjct: 397 YVDKGLEYCRQFLRVLFFPR-LKEFIRNQDWNDPKSKLQQCCLTLRYSLGGEPDIPLYKV 455
Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
GP +D + V V G A G+ + + AE AA + L+
Sbjct: 456 LGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALE 499
Score = 48.1 bits (114), Expect = 2e-06
Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 55/182 (30%)
Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY-----------------QESY----------- 40
LE+ IGY F +R LL+ ALTH S +Y Q Y
Sbjct: 46 LEELIGYTFQDRCLLQLALTHPSHKLNYGTNPDHAKNSLTNCGIRQPKYGDRKEHIMTKR 105
Query: 41 ---------------------------ERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
ERLEFLGD ++ LL S L+ F +EG L+
Sbjct: 106 KLGINTLINIMKRLGVIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLEEGGLAT 165
Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
++V +++A++L F+ + + + A+ E++I A YLDGG+
Sbjct: 166 YRTAIVQNRHLAKLAKKLRKDEFLLYAHGYDLCFETELKHAMANCFEAVIGAKYLDGGLV 225
Query: 134 VA 135
VA
Sbjct: 226 VA 227
>gnl|CDD|144289 pfam00636, Ribonuclease_3, RNase3 domain.
Length = 96
Score = 97.0 bits (242), Expect = 4e-21
Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 5/96 (5%)
Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
ERLEFLGD +L L++S L+ + EGEL+ ++LVS ET +++AR+L L +IR
Sbjct: 1 ERLEFLGDAVLELIVSEYLYEKYPDLSEGELTRLRSALVSNETLAKLARKLGLDKYIRRG 60
Query: 101 SDLRKDV-----CSFMTSIQADVVESLIAALYLDGG 131
+ S + ADV E+LI A+YLDGG
Sbjct: 61 RNALSKGEKAKSASLSPKVLADVFEALIGAIYLDGG 96
>gnl|CDD|28930 cd00048, DSRM, Double-stranded RNA binding motif. Binding is not
sequence specific but is highly specific for double
stranded RNA. Found in a variety of proteins including
dsRNA dependent protein kinase PKR, RNA helicases,
Drosophila staufen protein, E. coli RNase III, RNases
H1, and dsRNA dependent adenosine deaminases..
Length = 68
Score = 76.6 bits (188), Expect = 6e-15
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
+ K+ LQE A + PEY++ GPDH PRFTV V + G +G SK+ A+Q A
Sbjct: 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNA 60
Query: 216 AAEVLK 221
A L+
Sbjct: 61 AEAALR 66
>gnl|CDD|143824 pfam00035, dsrm, Double-stranded RNA binding motif. Putative motif
shared by proteins that bind to dsRNA. At least some
DSRM proteins seem to bind to specific RNA targets.
Exemplified by Staufen, which is involved in
localisation of at least five different mRNAs in the
early Drosophila embryo. Also by interferon-induced
protein kinase in humans, which is part of the cellular
response to dsRNA.
Length = 66
Score = 68.5 bits (168), Expect = 2e-12
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
K+ LQE K G P Y+ GP H P FTV V + G G SK+ A+Q+AA
Sbjct: 1 PKSLLQELCQ-KKGKKPPYEYVEEEGPSHSPTFTVTVTVGGKKYGTGTGSSKKEAKQLAA 59
Query: 217 AEVLK 221
+ L+
Sbjct: 60 EKALQ 64
>gnl|CDD|35920 KOG0701, KOG0701, KOG0701, dsRNA-specific nuclease Dicer and related
ribonucleases [RNA processing and modification].
Length = 1606
Score = 52.3 bits (125), Expect = 1e-07
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
SLL +ALT SS S S ERLE LGD +L L +S LF + EG+LS + VS
Sbjct: 1006 SLLLEALTTSSCQDS--FSLERLELLGDSLLKLAVSRHLFLTYPDLDEGQLSRLRDVNVS 1063
Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
+ +++A + L S++R + + Q DV L D
Sbjct: 1064 NDNLARLAVKKGLYSYLRHEGF---EPSRWWVPGQLDVNNVDCKDLSGD 1109
Score = 41.9 bits (98), Expect = 1e-04
Identities = 43/141 (30%), Positives = 59/141 (41%), Gaps = 13/141 (9%)
Query: 6 YSTLEKRIGYA--FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
LE+ +G F +LL +A H S+ ++ ERLEFLGD +L L F F
Sbjct: 1213 LDRLERELGLKFKFLEAALLVQAFIHCSLRAEGLDATERLEFLGDAVLDKLSDKHPFEVF 1272
Query: 64 DSAKEGELSVRFNSLVS--AETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQADVVE 120
GEL+ + V+ E V L + S L K + AD VE
Sbjct: 1273 IRLDGGELTDLREAGVNTLNENDLNVKVPKSLPYNLLDQSSVLEKSI--------ADSVE 1324
Query: 121 SLIAALYLDGGIEVAGTFVDK 141
+LI A +GG A F+D
Sbjct: 1325 ALIGASLSEGGPSSALLFMDW 1345
Score = 40.0 bits (93), Expect = 5e-04
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 23/158 (14%)
Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFDSAK 67
E+++ Y F + L +A TH+S ++ Y+RLEFLGD +L LI+ L+
Sbjct: 1374 FEEKLNYRFKLKPYLTQATTHASYIYNRITDCYQRLEFLGDAVLDYLITKHLYEDPRQHS 1433
Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR-------------VSSDLRKDVCSFM--- 111
G L+ ++LV+ + +A + DL FI VS L+ ++ S
Sbjct: 1434 PGVLTDLRSALVNNTIFASLAVKADLHKFIIAASPGLIHNIDRFVSFQLQSNLDSLFGWE 1493
Query: 112 -----TSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
D+ ES+ A+ LD G + ++K+W
Sbjct: 1494 EDIEVPKALGDIFESIAGAIKLDSGN-MMEPCIEKFWA 1530
>gnl|CDD|38936 KOG3732, KOG3732, KOG3732, Staufen and related
double-stranded-RNA-binding proteins [Intracellular
trafficking, secretion, and vesicular transport,
Transcription].
Length = 339
Score = 40.4 bits (94), Expect = 4e-04
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
LQE+ + G+TP Y+V GP H P F V + G A G SK+ A+ AA +L
Sbjct: 44 LQEYG-LRRGLTPVYEVLREEGPPHMPNFVFRVTV-GEITATGEGKSKKLAKHRAAEALL 101
Query: 221 K 221
K
Sbjct: 102 K 102
Score = 36.2 bits (83), Expect = 0.008
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
LQE A AK PEY++ SG H F + + +G SK+ A++ AA
Sbjct: 146 GRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENFT-EEGKGPSKKIAKRNAAEA 204
Query: 219 VLKREG 224
+L+ G
Sbjct: 205 MLESLG 210
>gnl|CDD|144925 pfam01510, Amidase_2, N-acetylmuramoyl-L-alanine amidase. This
family includes zinc amidases that have
N-acetylmuramoyl-L-alanine amidase activity EC:3.5.1.28.
This enzyme domain cleaves the amide bond between
N-acetylmuramoyl and L-amino acids in bacterial cell
walls (preferentially: D-lactyl-L-Ala). The structure is
known for the bacteriophage T7 structure and shows that
two of the conserved histidines are zinc binding.
Length = 126
Score = 28.5 bits (64), Expect = 1.7
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF---RSGPDHDP 187
GIE+ G D L++ L W ++G+ P+Y + SG DP
Sbjct: 71 GIELCGDGGDVTPTDAQLEALA-------ALLAWLCRRYGIPPDYTIVGHREVSGTHCDP 123
Query: 188 R 188
Sbjct: 124 G 124
>gnl|CDD|37988 KOG2777, KOG2777, KOG2777, tRNA-specific adenosine deaminase 1 [RNA
processing and modification].
Length = 542
Score = 28.4 bits (63), Expect = 1.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 173 PEYKVTFRSGPDHDPRFTVVVEISG 197
+Y + ++GP H P F VE++G
Sbjct: 10 LQYNLVSQTGPVHAPLFPFSVEVNG 34
Score = 28.0 bits (62), Expect = 2.3
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLK 221
+ SGP H P+F + V + G + +K+ A A + K
Sbjct: 99 LANGLFFDFVNESGPQHAPKFVMSVVVDGRWFEGGGRSKKEAKQEAAMAALQVLFK 154
>gnl|CDD|88571 cd05131, RasGAP_IQGAP2, IQGAP2 is a member of the IQGAP family that
contains a calponin-homology (CH) domain which binds
F-actin, IQGAP-specific repeat, a single WW domain, four
IQ motifs which mediate interactions with calmodulin,
and a Ras-GTPase-activating protein (GAP)-related domain
that binds Rho family GTPases. IQGAP2 and IQGAP3 play
important roles in the regulation of the cytoskeleton
for axon outgrowth in hippocampal neurons and are
thought to stay in a common regulatory pathway. The
results of RNA interference studies indicated that
IQGAP3 partially compensates functions of IQGAP2, but
has lesser ability than IQGAP2 to promote axon outgrowth
in hippocampal neuron. Morevover, IQGAP2 is required for
the cadherin-mediated cell-to-cell adhesion in Xenopus
laevis embryos..
Length = 339
Score = 27.7 bits (61), Expect = 2.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
E+AL H + + S + L + D++LG ++S+L
Sbjct: 107 EQALLHPEVRAKLESSIQVLRSVTDKVLGSIMSSL 141
>gnl|CDD|37906 KOG2695, KOG2695, KOG2695, WD40 repeat protein [General function
prediction only].
Length = 425
Score = 27.3 bits (60), Expect = 3.2
Identities = 12/49 (24%), Positives = 16/49 (32%)
Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
K + RA K K + + A+ V E F G D R
Sbjct: 324 KLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372
>gnl|CDD|37118 KOG1907, KOG1907, KOG1907, Phosphoribosylformylglycinamidine synthase
[Nucleotide transport and metabolism].
Length = 1320
Score = 26.9 bits (59), Expect = 4.7
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
+ + + W+ + + K + + + E K P+Y + + H + +S
Sbjct: 1000 SDLREEWELTSYELQKLQDNPECAEVERECIKDNYDPQYDLYYNPAFIH----NEQLFLS 1055
Query: 197 GLAP 200
AP
Sbjct: 1056 STAP 1059
>gnl|CDD|146630 pfam04097, Nic96, Nup93/Nic96. Nup93/Nic96 is a component of the
nuclear pore complex. It is required for the correct
assembly of the nuclear pore complex. In Saccharomyces
cerevisiae, Nic96 has been shown to be involved in the
distribution and cellular concentration of the GTPase
Gsp1. The structure of Nic96 has revealed a mostly alpha
helical structure.
Length = 602
Score = 26.5 bits (59), Expect = 6.0
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 9/48 (18%)
Query: 149 KSGKFRRDAKTELQEWAHAKFGVTP---------EYKVTFRSGPDHDP 187
RD T L+ +A + P EY R+ P+ DP
Sbjct: 129 GFKSVDRDFPTYLKAYATSPDRRLPPELEDKLHLEYNQRLRNSPEGDP 176
>gnl|CDD|36416 KOG1202, KOG1202, KOG1202, Animal-type fatty acid synthase and
related proteins [Lipid transport and metabolism].
Length = 2376
Score = 26.5 bits (58), Expect = 6.2
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 20/104 (19%)
Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
+ Y DG + T + YW+ +++ T L + A A G++ E + R
Sbjct: 594 LGCGYADGCLTQEQTVLAAYWRGQSIL--------DTHLPKGAMAAVGLSWE-QCKSRCP 644
Query: 183 PD-----HDPRFTVVVEISGLAPAQGMD--CSKRAAEQVAAAEV 219
PD H+ + V ISG P + + AE V A EV
Sbjct: 645 PDVVPACHNSKDNVT--ISG--PQASVFAFVEQLRAEGVFAKEV 684
>gnl|CDD|38973 KOG3769, KOG3769, KOG3769, Ribonuclease III domain proteins
[Translation, ribosomal structure and biogenesis].
Length = 333
Score = 26.1 bits (57), Expect = 7.3
Identities = 48/236 (20%), Positives = 86/236 (36%), Gaps = 21/236 (8%)
Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY-----------------QESYERLEFLGDR 49
S KR+ + S L KALT+ S S+ Q S E L +G +
Sbjct: 66 SAFGKRLQSEEISLSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIGKQ 125
Query: 50 ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
L ++ L + E L N L+ E + +A L + S + K
Sbjct: 126 FLSFYVTEYLKCKYPRLPEEGLHAIVNGLLGEEVLAHIATHLGIEELGL-SEEFPKVGEI 184
Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAK 168
+ +L+ ++ L+ G F++ + L + ++ L +
Sbjct: 185 SQDESSRRAIGALLGSVGLEKGFNFVRDFINDQILSKDLDPREMWQLQWPRRLLSRLCKR 244
Query: 169 FGVT-PEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
G+ PE ++ SG + +P + V + QG S + AE+ AA + L +
Sbjct: 245 RGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIK 300
>gnl|CDD|143908 pfam00136, DNA_pol_B, DNA polymerase family B. This region of DNA
polymerase B appears to consist of more than one
structural domain, possibly including elongation,
DNA-binding and dNTP binding activities.
Length = 458
Score = 26.1 bits (58), Expect = 7.3
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
R+D C F+ + V++ L+ ++ + + K K L++
Sbjct: 288 RRDWCEFVKEVIRKVLDLLLKDKDVEDAAPSLKIVIIEILK----SLTDKLVQNKVPLED 343
Query: 164 WAHAKFGVTP--EYKVTF 179
K P EYK
Sbjct: 344 LVITKELSKPPSEYKKKN 361
>gnl|CDD|32398 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B
[Inorganic ion transport and metabolism].
Length = 681
Score = 25.9 bits (57), Expect = 9.8
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 50 ILGLLISTLLFNHFDSA-KEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKD 106
I +L T+LF +F A EG + +SL +T + S V +++L+K
Sbjct: 68 ITIILWFTVLFANFAEAVAEGRGKAQADSLRKTKTETIARLLRADGSIEMVPATELKKG 126
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.132 0.377
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,582,372
Number of extensions: 128410
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 28
Length of query: 227
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 137
Effective length of database: 4,318,927
Effective search space: 591692999
Effective search space used: 591692999
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)