RPSBLAST alignment of GI: 254780940 and protein with PDBid: 2nug

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221

 Score =  138 bits (349), Expect = 6e-34
 Identities = 82/219 (37%), Positives = 118/219 (53%), Gaps = 14/219 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK++GY F ++SLLEKALTH S  +S +E YE LEFLGD ++   I  LL  +  + +E
Sbjct: 7   LEKKLGYTFKDKSLLEKALTHVS--YSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKRE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS     L+S E  + +A++L+L  FIR+      +       I  DV E+L AA+Y+
Sbjct: 65  GFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINET------IIGDVFEALWAAVYI 118

Query: 129 DGGIEVAGTFVDKYWK-----QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           D G +   T    Y         A+K G+ ++D KT LQE    ++   PEY++    GP
Sbjct: 119 DSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGP 178

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            H  +F V  +I       G   SK+ AEQ AA E++K 
Sbjct: 179 HHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIKL 216