HHsearch alignment for GI: 254780941 and conserved domain: COG0486
>COG0486 ThdF Predicted GTPase [General function prediction only].
Probab=100.00 E-value=1.6e-33 Score=236.82 Aligned_cols=163 Identities=28% Similarity=0.405 Sum_probs=142.3
Q ss_pred CCEE-EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 1218-998338998688999998689202105888860212789997399489999879840101235753210023455
Q gi|254780941|r 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 21 ksg~-VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 45864999879988679999988667866742899974103789999898899998567766673489999999999999
Q ss_pred HHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 55321001100001000000012234544287202578721101043457888864100123343110001387426789
Q gi|254780941|r 100 KHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~ 179 (311)
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L~ 368 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGLDALR 368 (454)
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHH-HCCCCCCEEEEEECHHCCCCCCCCHH-----HCCCCCCEEEEEECCCCCHHHHH
T ss_conf 8599899997088777601177887-24368977999960211564321012-----02678826999825765799999
Q ss_pred HHHHHHCCCC
Q ss_conf 9999836622
Q gi|254780941|r 180 NYLCSTLPLA 189 (311)
Q Consensus 180 ~~L~~~lpe~ 189 (311)
T Consensus 369 ~~i~~~~~~~ 378 (454)
T COG0486 369 EAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHC
T ss_conf 9999998630