HHsearch alignment for GI: 254780941 and conserved domain: COG4108
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis].
Probab=99.52 E-value=6.9e-14 Score=109.71 Aligned_cols=158 Identities=23% Similarity=0.368 Sum_probs=113.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHC--CCE--E-EE-CCC--CCCEEEEE-----EE------E--EEECCEEEEEEECCCCH
Q ss_conf 1899833899868899999868--920--2-10-588--88602127-----89------9--97399489999879840
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVG--AKV--S-IV-THK--VQTTRSIV-----RG------I--VSEKESQIVFLDTPGIF 81 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g--~~v--s-iv-S~k--~~TTr~~i-----~g------i--~~~~~~qiifvDTPG~~ 81 (311)
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG-- 90 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG-- 90 (528)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCEEEECCCCCC--
T ss_conf 403688568888511889999723034305501222577634227788887568558765787603884886147998--
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHH--HHHHHH------
Q ss_conf 101235753210023455553210011000010000000122345442872025787211010434--578888------
Q gi|254780941|r 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPER--LLEQAE------ 153 (311)
Q Consensus 82 ~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~--l~~~~~------ 153 (311)
T Consensus 91 ------HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~ 164 (528)
T COG4108 91 ------HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQ 164 (528)
T ss_pred ------CCCCCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf ------65432367899986410468986035866889999999850598469975023656688689999999985775
Q ss_pred -------------------------------------------------------------------HHHH---------
Q ss_conf -------------------------------------------------------------------6410---------
Q gi|254780941|r 154 -------------------------------------------------------------------IANK--------- 157 (311)
Q Consensus 154 -------------------------------------------------------------------~~~~--------- 157 (311)
T Consensus 165 ~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~ 244 (528)
T COG4108 165 CAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEA 244 (528)
T ss_pred EECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 03552445688564322350358799842677765443444457888677776244799999999999974133208898
Q ss_pred --CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf --0123343110001387426789999983662
Q gi|254780941|r 158 --LVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 158 --~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
T Consensus 245 fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~ 277 (528)
T COG4108 245 FLAGELTPVFFGSALGNFGVDHFLDALVDWAPS 277 (528)
T ss_pred HHCCCCCCEEEHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 856960115703323115889999999963899