HHsearch alignment for GI: 254780941 and conserved domain: COG5192
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis].
Probab=98.93 E-value=2.7e-09 Score=79.96 Aligned_cols=150 Identities=25% Similarity=0.350 Sum_probs=101.3
Q ss_pred HHHHHHHCCCCCCCCCCCCE-EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEE---EEEECCEEEEEEECCC
Q ss_conf 77654101433243685121-8998338998688999998689202105888860212789---9973994899998798
Q gi|254780941|r 4 GEITFFNEHKDFVQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG---IVSEKESQIVFLDTPG 79 (311)
Q Consensus 4 ~e~~~~~~~~~~~~~~~ksg-~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~g---i~~~~~~qiifvDTPG 79 (311)
T Consensus 50 ~ekklhVPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~t-------k~ti~~i~GPiTvvsgK~RRiTflEcp~ 122 (1077)
T COG5192 50 EEKKLHVPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFT-------KQTIDEIRGPITVVSGKTRRITFLECPS 122 (1077)
T ss_pred HHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-------HHHHHCCCCCEEEEECCEEEEEEEECHH
T ss_conf 554004642257855589975899636998874689999999987-------7542036786478615635789886717
Q ss_pred CHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCC-CEEEEEECCCHHHHHHHHHHH-----
Q ss_conf 40101235753210023455553210011000010000000122345442872-025787211010434578888-----
Q gi|254780941|r 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCVKPERLLEQAE----- 153 (311)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p-~IiVlNKiDlv~~~~l~~~~~----- 153 (311)
T Consensus 123 D------l~-~miD----vaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkh 191 (1077)
T COG5192 123 D------LH-QMID----VAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKH 191 (1077)
T ss_pred H------HH-HHHH----HHHHHHEEEEEECCCCCCEEHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8------88-8876----88752135788636667042488999998664897247888621133583789999988766
Q ss_pred -HHHHCCCCCCCCCCCCCC
Q ss_conf -641001233431100013
Q gi|254780941|r 154 -IANKLVFIEKTFMVSATK 171 (311)
Q Consensus 154 -~~~~~~~~~~i~~ISAk~ 171 (311)
T Consensus 192 RfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 192 RFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred HHHHHHCCCCEEEEECCCC
T ss_conf 6799873774489860201