HHsearch alignment for GI: 254780941 and conserved domain: COG5256
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis].
Probab=99.54 E-value=6.6e-14 Score=109.86 Aligned_cols=156 Identities=24% Similarity=0.309 Sum_probs=100.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC------------------------CEEEECCCC------CCEEEEEEEEEEECCEEE
Q ss_conf 18998338998688999998689------------------------202105888------860212789997399489
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGA------------------------KVSIVTHKV------QTTRSIVRGIVSEKESQI 72 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~------------------------~vsivS~k~------~TTr~~i~gi~~~~~~qi 72 (311)
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~ 87 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNF 87 (428)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEECCCCEE
T ss_conf 28999837878703445565777379798999999999986197716899985388667866668997778864377058
Q ss_pred EEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH-------HHCCHHHHHHHHHHCCCC-CEEEEEECCCHH
Q ss_conf 999879840101235753210023455553210011000010-------000000122345442872-025787211010
Q gi|254780941|r 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE-------LKVNIHDLLKEIAKRSSR-LILILNKIDCVK 144 (311)
Q Consensus 73 ifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~-------~~~~~~~il~~l~~~~~p-~IiVlNKiDlv~ 144 (311)
T Consensus 88 tIiDaPG-H-------rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~ 159 (428)
T COG5256 88 TIIDAPG-H-------RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS 159 (428)
T ss_pred EEEECCC-H-------HHHHHHHHCCHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 9960784-6-------7789876313313367999998889831014365875167899998569756999997156666
Q ss_pred H--HH---HHHHHHHHHHCCCCC----CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 4--34---578888641001233----4311000138742678999998366223568
Q gi|254780941|r 145 P--ER---LLEQAEIANKLVFIE----KTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 (311)
Q Consensus 145 ~--~~---l~~~~~~~~~~~~~~----~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y 193 (311)
T Consensus 160 wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s-------~~~pWY~ 210 (428)
T COG5256 160 WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS-------ENMPWYK 210 (428)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCC-------CCCCCCC
T ss_conf 27999999999999999971998667707962244677633267-------6786724